BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14919
(339 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3DAW|B Chain B, Structure Of The Actin-Depolymerizing Factor Homology
Domain In Complex With Actin
Length = 164
Score = 152 bits (384), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 76/154 (49%), Positives = 101/154 (65%), Gaps = 1/154 (0%)
Query: 161 SIDTRTQTLSGVAFPLLPDAESSVHKLIKAKYNYVQFRIDLQEETINLVQSGEVTLKQLP 220
S+DT+ QTL GVAFP+ DA ++ KL K + NYVQ ID++ ETI L + L+ LP
Sbjct: 9 SMDTKHQTLQGVAFPISRDAFQALEKLSKKQLNYVQLEIDIKNETIILANTENTELRDLP 68
Query: 221 SMIPTDSARYHLFNFRHEFEGKIIDSVVFIYSMPGYSLPIKERMLYSSCKAPLLENL-HH 279
IP DSARYH F ++H EG ++SVVFIYSMPGY+ I+ERMLYSSCK+PLLE +
Sbjct: 69 KRIPKDSARYHFFLYKHSHEGDYLESVVFIYSMPGYTCSIRERMLYSSCKSPLLEIVERQ 128
Query: 280 LGLTIDKKLEIDSGSXXXXXXXXXXXHPKKTAER 313
L + + +K+EID+G HPK+ A +
Sbjct: 129 LQMDVIRKIEIDNGDELTADFLYDEVHPKQHAHK 162
>pdb|2D8B|A Chain A, Solution Structure Of The Second Tandem Cofilin-Domain Of
Mouse Twinfilin
Length = 166
Score = 152 bits (383), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 76/143 (53%), Positives = 101/143 (70%), Gaps = 3/143 (2%)
Query: 154 SSGQCQ--ISIDTRTQTLSGVAFPLLPDAESSVHKLIKAKYNYVQFRIDLQEETINLVQS 211
SSG+ Q +S+DT+ QTL GVAFP+ DA ++ KL K + NYVQ ID++ ETI L +
Sbjct: 5 SSGEVQTDVSVDTKHQTLQGVAFPISRDAFQALEKLSKKQLNYVQLEIDIKNETIILANT 64
Query: 212 GEVTLKQLPSMIPTDSARYHLFNFRHEFEGKIIDSVVFIYSMPGYSLPIKERMLYSSCKA 271
L+ LP IP DSARYH F ++H EG ++SVVFIYSMPGY+ I+ERMLYSSCK+
Sbjct: 65 ENTELRDLPKRIPKDSARYHFFLYKHSHEGDYLESVVFIYSMPGYTCSIRERMLYSSCKS 124
Query: 272 PLLENL-HHLGLTIDKKLEIDSG 293
PLLE + L + + +K+EID+G
Sbjct: 125 PLLEIVERQLQMDVIRKIEIDNG 147
>pdb|1M4J|A Chain A, Crystal Structure Of The N-Terminal Adf-H Domain Of Mouse
Twinfilin Isoform-1
pdb|1M4J|B Chain B, Crystal Structure Of The N-Terminal Adf-H Domain Of Mouse
Twinfilin Isoform-1
Length = 142
Score = 140 bits (352), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 63/127 (49%), Positives = 91/127 (71%), Gaps = 1/127 (0%)
Query: 1 NEALKKFFGSIRDEKIRVFKVSIENEALVLAGYKKVVGTWTQDFDKYVPDLIQEAQPCYI 60
+E +K+ F R+ K R+ K+SIENE LV+ +W QD+D +V L+++ QPCY+
Sbjct: 10 SEDVKEIFARARNGKYRLLKISIENEQLVVGSCSPPSDSWEQDYDSFVLPLLEDKQPCYV 69
Query: 61 LYRFDSKNETGGHDWLLIFWSPDDSPVRQKMLYASTKSTLKQDFGSGQIKEEIHATVPVD 120
L+R DS+N G ++W+ I WSPD S VRQKMLYA+T++TLK++FG G IK+E+ TV D
Sbjct: 70 LFRLDSQNAQG-YEWIFIAWSPDHSHVRQKMLYAATRATLKKEFGGGHIKDEVFGTVKED 128
Query: 121 VTLHGYE 127
V+LHGY+
Sbjct: 129 VSLHGYK 135
>pdb|2VAC|A Chain A, Structure Of N-Terminal Actin Depolymerizing Factor
Homology (Adf-H) Domain Of Human Twinfilin-2
Length = 134
Score = 139 bits (350), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 64/129 (49%), Positives = 89/129 (68%), Gaps = 1/129 (0%)
Query: 1 NEALKKFFGSIRDEKIRVFKVSIENEALVLAGYKKVVGTWTQDFDKYVPDLIQEAQPCYI 60
E LK+FF R +R+ KV IE+E LVL ++ VG W QD+D+ V L+ QPCY+
Sbjct: 7 TEELKEFFAKARAGSVRLIKVVIEDEQLVLGASQEPVGRWDQDYDRAVLPLLDAQQPCYL 66
Query: 61 LYRFDSKNETGGHDWLLIFWSPDDSPVRQKMLYASTKSTLKQDFGSGQIKEEIHATVPVD 120
LYR DS+N G +WL + WSPD+SPVR KMLYA+T++T+K++FG G IK+E+ TV D
Sbjct: 67 LYRLDSQNAQG-FEWLFLAWSPDNSPVRLKMLYAATRATVKKEFGGGHIKDELFGTVKDD 125
Query: 121 VTLHGYELH 129
++ GY+ H
Sbjct: 126 LSFAGYQKH 134
>pdb|2HD7|A Chain A, Solution Structure Of C-Teminal Domain Of Twinfilin-1
Length = 142
Score = 139 bits (350), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 69/140 (49%), Positives = 91/140 (65%), Gaps = 1/140 (0%)
Query: 171 GVAFPLLPDAESSVHKLIKAKYNYVQFRIDLQEETINLVQSGEVTLKQLPSMIPTDSARY 230
GVAFP+ DA ++ KL K + NYVQ ID++ ETI L + L+ LP IP DSARY
Sbjct: 3 GVAFPISRDAFQALEKLSKKQLNYVQLEIDIKNETIILANTENTELRDLPKRIPKDSARY 62
Query: 231 HLFNFRHEFEGKIIDSVVFIYSMPGYSLPIKERMLYSSCKAPLLENL-HHLGLTIDKKLE 289
H F ++H EG ++SVVFIYSMPGY+ I+ERMLYSSCK+PLLE + L + + +K+E
Sbjct: 63 HFFLYKHSHEGDYLESVVFIYSMPGYTCSIRERMLYSSCKSPLLEIVERQLQMDVIRKIE 122
Query: 290 IDSGSXXXXXXXXXXXHPKK 309
ID+G HPK+
Sbjct: 123 IDNGDELTADFLYDEVHPKQ 142
>pdb|2W0I|A Chain A, Structure Of C-Terminal Actin Depolymerizing Factor
Homology (Adf-H) Domain Of Human Twinfilin-2
Length = 135
Score = 125 bits (313), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 60/123 (48%), Positives = 85/123 (69%), Gaps = 1/123 (0%)
Query: 173 AFPLLPDAESSVHKLIKAKYNYVQFRIDLQEETINLVQSGEVTLKQLPSMIPTDSARYHL 232
+ PL P+A+ ++ +L + NY+Q ++DL+ ETI LV + + QLPS +P D+ARYH
Sbjct: 1 SMPLQPEAQRALQQLKQKMVNYIQMKLDLERETIELVHTEPTDVAQLPSRVPRDAARYHF 60
Query: 233 FNFRHEFEGKIIDSVVFIYSMPGYSLPIKERMLYSSCKAPLLENLHH-LGLTIDKKLEID 291
F ++H EG ++SVVFIYSMPGY IKERMLYSSCK+ LL+++ L I KK+EI
Sbjct: 61 FLYKHTHEGDPLESVVFIYSMPGYKCSIKERMLYSSCKSRLLDSVEQDFHLEIAKKIEIG 120
Query: 292 SGS 294
G+
Sbjct: 121 DGA 123
>pdb|2LJ8|A Chain A, Solution Structure Of AdfCOFILIN FROM TRYPANOSOMA BRUCEI
Length = 144
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 35 KVVGTWTQDFDKYVPDLIQEAQPCYILYRFDSKNETGGHDWL-LIFWSPDDSPVRQKMLY 93
K +G +FD+++ + I + PCY + F+ G D L LI W+PD R KMLY
Sbjct: 48 KTIGERGANFDQFI-EAIDKNVPCYAAFDFEYTTNDGPRDKLILISWNPDSGAPRTKMLY 106
Query: 94 ASTKSTL 100
+S++ L
Sbjct: 107 SSSRDAL 113
>pdb|2I2Q|A Chain A, Fission Yeast Cofilin
Length = 137
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 45/76 (59%), Gaps = 4/76 (5%)
Query: 42 QDFDKYVPDLIQEAQPCYILYRFD-SKNETGGHDWLLIFWSPDDSPVRQKMLYASTKSTL 100
+DFD ++ DL E Y +Y F+ + E + + I WSPD +P++ KM+Y+S+K TL
Sbjct: 48 KDFDTFLGDL-PEKDCRYAIYDFEFNLGEGVRNKIIFISWSPDVAPIKSKMVYSSSKDTL 106
Query: 101 KQDFGSGQIKEEIHAT 116
++ F I +I AT
Sbjct: 107 RRAFTG--IGTDIQAT 120
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 2/92 (2%)
Query: 194 YVQFRI-DLQEETINLVQSGEVTLKQLPSMIPTDSARYHLFNFRHEFEGKIIDSVVFIYS 252
YV F++ D + E + +S + +P RY +++F + + ++FI
Sbjct: 27 YVVFKMNDTKTEIVVEKKSTDKDFDTFLGDLPEKDCRYAIYDFEFNLGEGVRNKIIFISW 86
Query: 253 MPGYSLPIKERMLYSSCKAPLLENLHHLGLTI 284
P + PIK +M+YSS K L +G I
Sbjct: 87 SPDVA-PIKSKMVYSSSKDTLRRAFTGIGTDI 117
>pdb|1AK6|A Chain A, Destrin, Nmr, Minimized Average Structure
pdb|1AK7|A Chain A, Destrin, Nmr, 20 Structures
Length = 174
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 61/117 (52%), Gaps = 9/117 (7%)
Query: 12 RDEKIRVFKVSIENEALVLAGYKKV----VGTWTQDFDKYVPDLIQEAQPCYILY--RFD 65
+ +K +F +S + + +++ K++ VG D K+ ++ E Y LY F+
Sbjct: 40 KRKKAVIFCLSADKKCIIVEEGKEILVGDVGVTITDPFKHFVGMLPEKDCRYALYDASFE 99
Query: 66 SKNETGGHDWLLIFWSPDDSPVRQKMLYASTKSTLKQDFGSGQIKEEIHATVPVDVT 122
+K E+ + + W+P+ +P++ KM+YAS+K +K+ F IK E A P D+
Sbjct: 100 TK-ESRKEELMFFLWAPELAPLKSKMIYASSKDAIKKKFQG--IKHECQANGPEDLN 153
>pdb|1Q8G|A Chain A, Nmr Structure Of Human Cofilin
pdb|1Q8X|A Chain A, Nmr Structure Of Human Cofilin
pdb|3J0S|M Chain M, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|O Chain O, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|N Chain N, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|Q Chain Q, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|P Chain P, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|S Chain S, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|R Chain R, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|U Chain U, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|T Chain T, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|W Chain W, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|V Chain V, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|X Chain X, Remodeling Of Actin Filaments By Adf Cofilin Proteins
Length = 166
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 44/77 (57%), Gaps = 11/77 (14%)
Query: 44 FDKYVPDLIQEAQPC-YILY--RFDSKNETGGHDWLLIFWSPDDSPVRQKMLYASTKSTL 100
F K +PD + C Y LY +++K E+ D + IFW+P+ +P++ KM+YAS+K +
Sbjct: 71 FVKMLPD-----KDCRYALYDATYETK-ESKKEDLVFIFWAPESAPLKSKMIYASSKDAI 124
Query: 101 KQDFGSGQIKEEIHATV 117
K+ IK E+ A
Sbjct: 125 KKKLTG--IKHELQANC 139
Score = 35.4 bits (80), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 222 MIPTDSARYHLFNFRHEFEGKIIDSVVFIYSMPGYSLPIKERMLYSSCKAPLLENLHHL 280
M+P RY L++ +E + + +VFI+ P S P+K +M+Y+S K + + L +
Sbjct: 74 MLPDKDCRYALYDATYETKESKKEDLVFIFWAP-ESAPLKSKMIYASSKDAIKKKLTGI 131
>pdb|1F7S|A Chain A, Crystal Structure Of Adf1 From Arabidopsis Thaliana
Length = 139
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 57/118 (48%), Gaps = 11/118 (9%)
Query: 12 RDEKIRVFKVSIENEALVLAGYKKVVGTWTQDFDKYVPDLIQEAQPC-YILYRFD--SKN 68
R + V+K+ + + +V+ + + T+ ++F +P A C Y +Y FD +
Sbjct: 25 RTHRFIVYKIEEKQKQVVVEKVGQPIQTY-EEFAACLP-----ADECRYAIYDFDFVTAE 78
Query: 69 ETGGHDWLLIFWSPDDSPVRQKMLYASTKSTLKQDFGSGQIKEEIHATVPVDVTLHGY 126
I W PD + VR KM+YAS+K K++ Q+ E+ AT P ++ L +
Sbjct: 79 NCQKSKIFFIAWCPDIAKVRSKMIYASSKDRFKRELDGIQV--ELQATDPTEMDLDVF 134
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/87 (19%), Positives = 45/87 (51%), Gaps = 4/87 (4%)
Query: 188 IKAK--YNYVQFRIDLQEETINLVQSGE--VTLKQLPSMIPTDSARYHLFNFRHEFEGKI 243
+KAK + ++ ++I+ +++ + + + G+ T ++ + +P D RY +++F
Sbjct: 21 LKAKRTHRFIVYKIEEKQKQVVVEKVGQPIQTYEEFAACLPADECRYAIYDFDFVTAENC 80
Query: 244 IDSVVFIYSMPGYSLPIKERMLYSSCK 270
S +F + ++ +M+Y+S K
Sbjct: 81 QKSKIFFIAWCPDIAKVRSKMIYASSK 107
>pdb|1CNU|A Chain A, Phosphorylated Actophorin From Acantamoeba Polyphaga
Length = 137
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 57/106 (53%), Gaps = 10/106 (9%)
Query: 19 FKVSIENEALVLAGYKKVVGTWTQDFDKYVPDLIQEAQPC-YILYRFDSKNETGGHDWL- 76
FK++ N +V+ T+ +DF +P+ + C Y ++ ++ + + G + +
Sbjct: 27 FKMNASNTEVVVEHVGGPNATY-EDFKSQLPE-----RDCRYAIFDYEFQVDGGQRNKIT 80
Query: 77 LIFWSPDDSPVRQKMLYASTKSTLKQDFGSGQIKEEIHATVPVDVT 122
I W+PD +P++ KM+Y STK ++K+ Q+ E+ AT +++
Sbjct: 81 FILWAPDSAPIKSKMMYTSTKDSIKKKLVGIQV--EVQATDAAEIS 124
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 49/97 (50%), Gaps = 5/97 (5%)
Query: 191 KYNYVQFRIDLQEETINLVQSG--EVTLKQLPSMIPTDSARYHLFNFRHEFEGKIIDSVV 248
++ YV F+++ + + G T + S +P RY +F++ + +G + +
Sbjct: 21 QHRYVTFKMNASNTEVVVEHVGGPNATYEDFKSQLPERDCRYAIFDYEFQVDGGQRNKIT 80
Query: 249 FIYSMPGYSLPIKERMLYSSCKAPLLENLHHLGLTID 285
FI P S PIK +M+Y+S K + + L +G+ ++
Sbjct: 81 FILWAPD-SAPIKSKMMYTSTKDSIKKKL--VGIQVE 114
>pdb|1AHQ|A Chain A, Recombinant Actophorin
Length = 137
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 57/106 (53%), Gaps = 10/106 (9%)
Query: 19 FKVSIENEALVLAGYKKVVGTWTQDFDKYVPDLIQEAQPC-YILYRFDSKNETGGHDWL- 76
FK++ N +V+ T+ +DF +P+ + C Y ++ ++ + + G + +
Sbjct: 27 FKMNASNTEVVVEHVGGPNATY-EDFKSQLPE-----RDCRYAIFDYEFQVDGGQRNKIT 80
Query: 77 LIFWSPDDSPVRQKMLYASTKSTLKQDFGSGQIKEEIHATVPVDVT 122
I W+PD +P++ KM+Y STK ++K+ Q+ E+ AT +++
Sbjct: 81 FILWAPDSAPIKSKMMYTSTKDSIKKKLVGIQV--EVQATDAAEIS 124
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 49/97 (50%), Gaps = 5/97 (5%)
Query: 191 KYNYVQFRIDLQEETINLVQSG--EVTLKQLPSMIPTDSARYHLFNFRHEFEGKIIDSVV 248
++ YV F+++ + + G T + S +P RY +F++ + +G + +
Sbjct: 21 QHRYVTFKMNASNTEVVVEHVGGPNATYEDFKSQLPERDCRYAIFDYEFQVDGGQRNKIT 80
Query: 249 FIYSMPGYSLPIKERMLYSSCKAPLLENLHHLGLTID 285
FI P S PIK +M+Y+S K + + L +G+ ++
Sbjct: 81 FILWAPD-SAPIKSKMMYTSTKDSIKKKL--VGIQVE 114
>pdb|1TVJ|A Chain A, Solution Structure Of Chick Cofilin
Length = 166
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 33/48 (68%), Gaps = 3/48 (6%)
Query: 59 YILY--RFDSKNETGGHDWLLIFWSPDDSPVRQKMLYASTKSTLKQDF 104
Y LY +++K E+ D + IFW+P+ +P++ KM+YAS+K +K+ F
Sbjct: 82 YALYDATYETK-ESKKEDLVFIFWAPESAPLKSKMIYASSKDAIKKKF 128
Score = 34.7 bits (78), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 222 MIPTDSARYHLFNFRHEFEGKIIDSVVFIYSMPGYSLPIKERMLYSSCK 270
++P + RY L++ +E + + +VFI+ P S P+K +M+Y+S K
Sbjct: 74 LLPLNDCRYALYDATYETKESKKEDLVFIFWAP-ESAPLKSKMIYASSK 121
>pdb|1CFY|A Chain A, Yeast Cofilin, Monoclinic Crystal Form
pdb|1CFY|B Chain B, Yeast Cofilin, Monoclinic Crystal Form
pdb|1QPV|A Chain A, Yeast Cofilin
pdb|1COF|A Chain A, Yeast Cofilin, Orthorhombic Crystal Form
Length = 143
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 54 EAQPCYILYRFD---SKNETGGHDWLLIFWSPDDSPVRQKMLYASTKSTLKQ 102
E Y +Y F+ + NE + WSPD +PVR KM+YAS+K L++
Sbjct: 59 ENDCLYAIYDFEYEINGNEGKRSKIVFFTWSPDTAPVRSKMVYASSKDALRR 110
>pdb|2KVK|A Chain A, Solution Structure Of AdfCOFILIN (LDCOF) FROM LEISHMANIA
DONOVANI
Length = 144
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
Query: 56 QPCYILYRFDSKNETGG--HDWLLIFWSPDDSPVRQKMLYASTKSTL 100
+PCY+ + F+ N+ G +LI W PD + R+KM+Y++++ L
Sbjct: 61 KPCYVAFDFEY-NDAGSKREKLILIQWIPDTARPREKMMYSASRDAL 106
>pdb|2L72|A Chain A, Solution Structure And Dynamics Of Adf From Toxoplasma
Gondii (Tgadf)
Length = 139
Score = 35.0 bits (79), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 72 GHDWLLIFWSPDDSPVRQKMLYASTK-STLKQDFGSGQIKEEIH 114
G+ + W PD++PV+ +M YAS+K + LK+ G+ + E H
Sbjct: 87 GNKIQFVLWCPDNAPVKPRMTYASSKDALLKKLDGATAVALEAH 130
>pdb|1V6F|A Chain A, Solution Structure Of Glia Maturation Factor-Beta From Mus
Musculus
Length = 151
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 50/98 (51%), Gaps = 9/98 (9%)
Query: 14 EKIRVFKVSIE--NEALVLAGYK-KVVGTWTQDFDKYVPDLIQ----EAQPCYILYRFDS 66
EK+R F+ E N A+++ K + + ++ + PD ++ E QP +I+Y +
Sbjct: 22 EKLRKFRFRKETHNAAIIMKIDKDERLVVLDEELEGVSPDELKDELPERQPRFIVYSYKY 81
Query: 67 KNETG--GHDWLLIFWSPDDSPVRQKMLYASTKSTLKQ 102
+++ G + IF SP Q+M+YA +K+ L Q
Sbjct: 82 QHDDGRVSYPLCFIFSSPVGCKPEQQMMYAGSKNKLVQ 119
>pdb|3QC5|X Chain X, Gspb
pdb|3QC6|X Chain X, Gspb
Length = 360
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
Query: 108 QIKEEIHATVPVDVTLHGYELHKRAVKAPAPLTSQEEE--RAELRKFESSGQCQISIDTR 165
Q+K I VP+D T+ Y + A A + + + E A + K +GQ ++ I R
Sbjct: 220 QLKVRIFGNVPIDTTIGDYTRYVVATDAAGNVNATQTEMGNAAVDKTSVNGQFKLIIRFR 279
Query: 166 TQTLSGVAFPLLPDAESSVHK 186
+T F P+ + V K
Sbjct: 280 IKTPENTVFVNNPNQLTEVEK 300
>pdb|2XFA|A Chain A, Crystal Structure Of Plasmodium Berghei Actin
Depolymerization Factor 2
pdb|2XFA|B Chain B, Crystal Structure Of Plasmodium Berghei Actin
Depolymerization Factor 2
Length = 148
Score = 32.0 bits (71), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 18/24 (75%)
Query: 77 LIFWSPDDSPVRQKMLYASTKSTL 100
IFWSP S ++KMLYA++K +L
Sbjct: 94 FIFWSPGLSKPKEKMLYAASKESL 117
Score = 31.6 bits (70), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 240 EGKIIDSVVFIYSMPGYSLPIKERMLYSSCKAPLLENLHHLGLTIDKKLEID 291
EG + D + FI+ PG S P KE+MLY++ K L+ ++ + +++ +I+
Sbjct: 85 EGVLRDRIYFIFWSPGLSKP-KEKMLYAASKESLVRKINGIFKSLEITCDIN 135
>pdb|4I8E|X Chain X, Gspb Plus Alpha-2,3-Sialyl (1-Thioethyl)galactose
Length = 391
Score = 32.0 bits (71), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
Query: 108 QIKEEIHATVPVDVTLHGYELHKRAVKAPAPLTSQEEE--RAELRKFESSGQCQISIDTR 165
Q+K I VP+D T+ Y + A A + + + E A + K +GQ ++ I R
Sbjct: 235 QLKVRIFGNVPIDTTIGDYTRYVVATDAAGNVNATQTEMGNAAVDKTSVNGQFKLIIRFR 294
Query: 166 TQTLSGVAFPLLPDAESSVHK 186
+T F P+ + V K
Sbjct: 295 IKTPENTVFVNNPNQLTEVEK 315
>pdb|3L50|A Chain A, The Crystal Structure Of Human Glia Maturation Factor,
Gamma (Gmfg)
pdb|3L50|B Chain B, The Crystal Structure Of Human Glia Maturation Factor,
Gamma (Gmfg)
Length = 136
Score = 31.2 bits (69), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 49/98 (50%), Gaps = 9/98 (9%)
Query: 14 EKIRVFKVSIE--NEALVLAGYK-KVVGTWTQDFDKYVPDLIQ----EAQPCYILYRFDS 66
EK+R F+ E N A+++ K + + ++F P+ ++ E QP +++Y +
Sbjct: 12 EKLRKFRFRKETDNAAIIMKVDKDRQMVVLEEEFQNISPEELKMELPERQPRFVVYSYKY 71
Query: 67 KNETG--GHDWLLIFWSPDDSPVRQKMLYASTKSTLKQ 102
++ G + IF SP Q+M+YA +K+ L Q
Sbjct: 72 VHDDGRVSYPLCFIFSSPVGCKPEQQMMYAGSKNRLVQ 109
>pdb|1WFS|A Chain A, Solution Structure Of Glia Maturation Factor-Gamma From
Mus Musculus
Length = 151
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 54 EAQPCYILYRFDSKNETG--GHDWLLIFWSPDDSPVRQKMLYASTKSTLKQ 102
E QP +++Y + ++ G + IF SP Q+M+YA +K+ L Q
Sbjct: 69 ERQPRFVVYSYKYVHDDGRVSYPLCFIFSSPVGCKPEQQMMYAGSKNRLVQ 119
>pdb|1VKK|A Chain A, Crystal Structure Of Glia Maturation Factor-Gamma (Gmfg)
From Mus Musculus At 1.50 A Resolution
Length = 154
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 54 EAQPCYILYRFDSKNETG--GHDWLLIFWSPDDSPVRQKMLYASTKSTLKQ 102
E QP +++Y + ++ G + IF SP Q+M+YA +K+ L Q
Sbjct: 75 ERQPRFVVYSYKYVHDDGRVSYPLCFIFSSPVGCKPEQQMMYAGSKNRLVQ 125
>pdb|2M0R|A Chain A, Solution Structure And Dynamics Of Human S100a14
pdb|2M0R|B Chain B, Solution Structure And Dynamics Of Human S100a14
Length = 104
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 36/73 (49%), Gaps = 11/73 (15%)
Query: 156 GQCQISIDTRTQTLSGVAFPLLPDAESSVHKLIKAKYNYVQFRIDLQEETINLVQSGEVT 215
GQC+ + Q S D E ++ LIK N+ Q+ ++ +ET+ + ++
Sbjct: 2 GQCRSANAEDAQEFS--------DVERAIETLIK---NFHQYSVEGGKETLTPSELRDLV 50
Query: 216 LKQLPSMIPTDSA 228
+QLP ++P++
Sbjct: 51 TQQLPHLMPSNCG 63
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,063,842
Number of Sequences: 62578
Number of extensions: 406506
Number of successful extensions: 974
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 936
Number of HSP's gapped (non-prelim): 38
length of query: 339
length of database: 14,973,337
effective HSP length: 99
effective length of query: 240
effective length of database: 8,778,115
effective search space: 2106747600
effective search space used: 2106747600
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)