Query psy14919
Match_columns 339
No_of_seqs 196 out of 1366
Neff 7.3
Searched_HMMs 46136
Date Sat Aug 17 00:17:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14919.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14919hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1747|consensus 100.0 1.8E-74 3.9E-79 525.0 26.0 329 1-335 10-340 (342)
2 PLN03216 actin depolymerizing 100.0 2.9E-34 6.2E-39 243.6 12.0 132 168-306 6-141 (141)
3 PLN03216 actin depolymerizing 100.0 3.4E-30 7.4E-35 218.7 14.2 124 1-131 13-141 (141)
4 cd00013 ADF Actin depolymerisa 100.0 1.7E-30 3.6E-35 218.0 12.1 129 170-305 1-132 (132)
5 KOG1735|consensus 100.0 7.5E-31 1.6E-35 219.0 9.7 133 169-308 2-143 (146)
6 PF00241 Cofilin_ADF: Cofilin/ 100.0 1.3E-29 2.7E-34 211.4 11.7 124 178-306 1-127 (127)
7 smart00102 ADF Actin depolymer 100.0 7E-29 1.5E-33 207.2 11.3 124 178-306 1-127 (127)
8 PF00241 Cofilin_ADF: Cofilin/ 100.0 9E-28 1.9E-32 200.2 13.5 123 2-131 1-127 (127)
9 KOG1735|consensus 99.9 1.1E-27 2.4E-32 200.0 8.9 125 1-132 8-142 (146)
10 PTZ00152 cofilin/actin-depolym 99.9 6.8E-28 1.5E-32 198.9 6.1 111 169-296 2-118 (122)
11 cd00013 ADF Actin depolymerisa 99.9 1.5E-26 3.3E-31 194.0 13.3 123 1-130 6-132 (132)
12 smart00102 ADF Actin depolymer 99.9 2.6E-26 5.7E-31 191.7 13.8 122 2-130 1-126 (127)
13 PTZ00152 cofilin/actin-depolym 99.9 3.1E-24 6.7E-29 177.1 10.2 93 1-106 8-104 (122)
14 KOG1736|consensus 99.9 1.4E-22 3.1E-27 162.4 9.2 131 170-306 4-141 (143)
15 KOG1736|consensus 99.7 3.7E-17 8.1E-22 131.3 11.4 123 1-131 11-141 (143)
16 KOG1747|consensus 99.7 3.4E-17 7.3E-22 150.5 6.5 130 168-309 3-139 (342)
17 KOG3655|consensus 99.2 5.9E-11 1.3E-15 115.6 11.5 126 2-135 11-138 (484)
18 KOG3655|consensus 99.1 1.9E-10 4.1E-15 112.1 9.5 124 177-307 10-135 (484)
19 PF09110 HAND: HAND; InterPro 23.7 1.4E+02 0.003 24.4 4.2 59 86-149 41-108 (113)
No 1
>KOG1747|consensus
Probab=100.00 E-value=1.8e-74 Score=525.03 Aligned_cols=329 Identities=51% Similarity=0.853 Sum_probs=312.2
Q ss_pred ChhHHHHHHccccCCeeEEEEEEeCCEEEEeeeeccCCCccCChhhhchhccCCCCcEEEEEEeeecCCCCceeEEEEEE
Q psy14919 1 NEALKKFFGSIRDEKIRVFKVSIENEALVLAGYKKVVGTWTQDFDKYVPDLIQEAQPCYILYRFDSKNETGGHDWLLIFW 80 (339)
Q Consensus 1 s~e~~~af~~~~~~~~r~ii~~i~~e~i~v~~~~~~~~~~~~d~~~l~~~~l~~~~p~Y~ly~~~~~~~~g~~klvfI~w 80 (339)
++++.+.|++.+++++|.+++.|+++++++..+.+++++|+.||++++..++.+.+|||+||+.+..++ +|+||+|
T Consensus 10 ~e~l~~~l~~~~~~k~R~ikIvI~nEql~~~s~~e~~~~w~~D~~~~v~~ll~~~ePcyILyrlds~~~----~w~lIs~ 85 (342)
T KOG1747|consen 10 TEALKKFLNEAKNGKLRLIKIVIENEQLSPGSTSEPSTSWERDYDKLVLPLLDAREPCYILYRLDSKNA----EWLLISW 85 (342)
T ss_pred HHHHHHHHHhcccCceEEEEEEEecccccCCccccccccHHHHHHHHHHHhhccCCceEEEEeecCCCc----cEEEEEE
Confidence 367899999999999999999999999999999999999999999999998999999999999987753 7999999
Q ss_pred cCCCchhhhHHHHhhcHHHHHhHhCCCceeEEEEEeCcccCChhHHHhhhhhccCCCCCCHHHHHHHHHHhhhccCcccc
Q psy14919 81 SPDDSPVRQKMLYASTKSTLKQDFGSGQIKEEIHATVPVDVTLHGYELHKRAVKAPAPLTSQEEERAELRKFESSGQCQI 160 (339)
Q Consensus 81 ~Pd~a~ik~KMlYASsk~~l~~~l~~~~i~~~i~a~d~~dl~~~~i~~~~~~~~~~~~lt~~E~~~~~~~~~e~~~~~~~ 160 (339)
+||+|+||+||||||||++|++++|+.++..+.++++++||+...+.+.+..+++++|||++|++++|++++| ..+.+
T Consensus 86 vPD~apVR~KMLYAsTrATlkrefG~~~i~ee~~~T~~~dl~~~~~~k~l~~~~~~~PLt~~EeEl~ei~~~e--~~t~~ 163 (342)
T KOG1747|consen 86 VPDNAPVRQKMLYASTRATLKREFGGAYITEELFATDLEDLTLLGYFKSLSSQAAPAPLTSDEEELKEINKNE--VLTEI 163 (342)
T ss_pred CCCCChHHHHHHHHHHHHHHHHHhccceeccccccCCHHHhhhHHHHHhhhhccCCCCCchhHHHHHHHHHHH--HHHhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999888 34456
Q ss_pred cccccccccCccccccChhHHHHHHHHHcCCccEEEEEEeCCCceEEEeecCC-CCcccccccCCCCCCeEEEEeeeeec
Q psy14919 161 SIDTRTQTLSGVAFPLLPDAESSVHKLIKAKYNYVQFRIDLQEETINLVQSGE-VTLKQLPSMIPTDSARYHLFNFRHEF 239 (339)
Q Consensus 161 ~~~~~~~~~sgv~~~~s~e~~~~~~~lk~~~~~~v~~ki~~~~e~I~l~~~~~-~~~~~l~~~Lp~~~prY~vy~~~~~~ 239 (339)
+..+++++++||+|++++++..++++|++++++||+|.||..+|+|.|.++.. ++++||...+|.+.|||++|.|.++|
T Consensus 164 ~~~~kh~tl~Gva~pi~~~a~kAl~~L~~~~~n~vql~ID~~nE~I~l~~t~~~~e~sdL~s~vP~d~prY~ff~~~ht~ 243 (342)
T KOG1747|consen 164 HTSPKHQTLQGVAFPIDRNAEKALQDLKSSKLNYVQLSIDLENETIQLSQTDTCTEPSDLPSRVPRDGPRYHFFLFKHTH 243 (342)
T ss_pred ccCcceeeccceeecccHHHHHHHHHHHhhccceEEEEeccccceeeeeccCCCCChHHhhhhcCCCCCceEEEeccccc
Confidence 77888888999999999999999999998889999999999999999999875 69999999999999999999999999
Q ss_pred CCceeceEEEEEEeCCCCCCcccceeeecchHHHHHHhhh-cCcceeEEEEeCCCCCCCHHHHHhhcCCCCCCCCCCCCC
Q psy14919 240 EGKIIDSVVFIYSMPGYSLPIKERMLYSSCKAPLLENLHH-LGLTIDKKLEIDSGSELTEEFLLEELHPKKTAERPKFDK 318 (339)
Q Consensus 240 ~g~~~~k~vFI~w~P~~~a~vk~KMlYAssk~~~~~~l~~-~~i~i~~~ie~~d~~el~~~~i~~~l~p~~~~~~~~f~k 318 (339)
+|...+.++|||.||.++|+||+||||||||.+|++.++. +||.|.++||++|.+||+++.+.+.+||.+-.+...|+|
T Consensus 244 eGD~~es~~FIYS~P~~~~sVKeRMlYSScK~~fLd~~k~~~gi~i~kKiEi~d~~eLte~~L~e~~Hp~~i~h~qafa~ 323 (342)
T KOG1747|consen 244 EGDPLESIVFIYSMPGYGCSVKERMLYSSCKSGFLDSLKNDLGIVISKKIEIDDGAELTEKFLYEELHPKQIAHPQAFAK 323 (342)
T ss_pred CCCCceeEEEEEECCCCCcchhhhhHhhhcchhHHHHHHHhcCeeEEEEEeeCcHHHhhHHHHHHhhCcccccccccccC
Confidence 9999999999999999999999999999999999999996 999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCcccCCCC
Q psy14919 319 PKGPPNRGAKRITKPQA 335 (339)
Q Consensus 319 P~~p~~r~~~~~~~~~~ 335 (339)
|+|||+|+++|.+++.+
T Consensus 324 P~~p~~rg~~R~~r~~~ 340 (342)
T KOG1747|consen 324 PKGPGGRGKPRLPRRPA 340 (342)
T ss_pred CCCCCCCCCCCCCCCCC
Confidence 99999999898776654
No 2
>PLN03216 actin depolymerizing factor; Provisional
Probab=100.00 E-value=2.9e-34 Score=243.61 Aligned_cols=132 Identities=21% Similarity=0.386 Sum_probs=120.5
Q ss_pred ccCccccccChhHHHHHHHHHcCC-ccEEEEEEeCCCceEEEeecC--CCCcccccccCCCCCCeEEEEeeeeec-CCce
Q psy14919 168 TLSGVAFPLLPDAESSVHKLIKAK-YNYVQFRIDLQEETINLVQSG--EVTLKQLPSMIPTDSARYHLFNFRHEF-EGKI 243 (339)
Q Consensus 168 ~~sgv~~~~s~e~~~~~~~lk~~~-~~~v~~ki~~~~e~I~l~~~~--~~~~~~l~~~Lp~~~prY~vy~~~~~~-~g~~ 243 (339)
++|||. ++++|+++|++|+.++ +|||+|+|+.+++.|+|+..+ +.++++|.+.||+++|||++|+|++.+ +|+.
T Consensus 6 ~~SGi~--v~~~c~~~f~~lk~~k~~r~iifkI~~~~~~ivv~~~~~~~~~~~d~~~~L~~~~~rY~vyd~~~~~~~g~~ 83 (141)
T PLN03216 6 ATTGMW--VTDECKNSFMEMKWKKVHRYIVFKIDEKSRKVTVDKVGGPGESYDDLAASLPTDDCRYAVFDFDFVTVDNCR 83 (141)
T ss_pred cCCCCe--eCHHHHHHHHHHHhCCCceEEEEEEcCCCCEEEEEecCCCCCCHHHHHHhCCCCCCeEEEEEeEeccCCCCc
Confidence 368999 9999999999999665 799999999888899998764 458999999999999999999999976 6888
Q ss_pred eceEEEEEEeCCCCCCcccceeeecchHHHHHHhhhcCcceeEEEEeCCCCCCCHHHHHhhcC
Q psy14919 244 IDSVVFIYSMPGYSLPIKERMLYSSCKAPLLENLHHLGLTIDKKLEIDSGSELTEEFLLEELH 306 (339)
Q Consensus 244 ~~k~vFI~w~P~~~a~vk~KMlYAssk~~~~~~l~~~~i~i~~~ie~~d~~el~~~~i~~~l~ 306 (339)
+++++||+|||+ +|+||.||+|||||.+|++.|+ ++.+.||++|.+||+++.|.++++
T Consensus 84 ~~klvFI~w~Pd-~a~vk~KMlYAssK~~lk~~l~----gi~~~iqatd~~el~~~~~~~~~~ 141 (141)
T PLN03216 84 KSKIFFIAWSPE-ASRIRAKMLYATSKDGLRRVLD----GVHYELQATDPTEMGFDVIRDRAK 141 (141)
T ss_pred ccCEEEEEECCC-CCCHHHHHHHHHHHHHHHHHhc----CCeEEEEECChHhcCHHHHHHHhC
Confidence 999999999999 9999999999999999999998 456789999999999999988763
No 3
>PLN03216 actin depolymerizing factor; Provisional
Probab=99.97 E-value=3.4e-30 Score=218.65 Aligned_cols=124 Identities=21% Similarity=0.369 Sum_probs=110.1
Q ss_pred ChhHHHHHHccccCC-eeEEEEEEeC--CEEEEeeeeccCCCccCChhhhchhccCCCCcEEEEEEeeecCCCC--ceeE
Q psy14919 1 NEALKKFFGSIRDEK-IRVFKVSIEN--EALVLAGYKKVVGTWTQDFDKYVPDLIQEAQPCYILYRFDSKNETG--GHDW 75 (339)
Q Consensus 1 s~e~~~af~~~~~~~-~r~ii~~i~~--e~i~v~~~~~~~~~~~~d~~~l~~~~l~~~~p~Y~ly~~~~~~~~g--~~kl 75 (339)
+++|+++|++++.++ +|||+|+|++ ++|+|++.+..+ .+|++|++. ||+++|||++||+++.+.+| +++|
T Consensus 13 ~~~c~~~f~~lk~~k~~r~iifkI~~~~~~ivv~~~~~~~----~~~~d~~~~-L~~~~~rY~vyd~~~~~~~g~~~~kl 87 (141)
T PLN03216 13 TDECKNSFMEMKWKKVHRYIVFKIDEKSRKVTVDKVGGPG----ESYDDLAAS-LPTDDCRYAVFDFDFVTVDNCRKSKI 87 (141)
T ss_pred CHHHHHHHHHHHhCCCceEEEEEEcCCCCEEEEEecCCCC----CCHHHHHHh-CCCCCCeEEEEEeEeccCCCCcccCE
Confidence 689999999999877 7999999975 478887764322 469999876 89999999999999988776 3899
Q ss_pred EEEEEcCCCchhhhHHHHhhcHHHHHhHhCCCceeEEEEEeCcccCChhHHHhhhh
Q psy14919 76 LLIFWSPDDSPVRQKMLYASTKSTLKQDFGSGQIKEEIHATVPVDVTLHGYELHKR 131 (339)
Q Consensus 76 vfI~w~Pd~a~ik~KMlYASsk~~l~~~l~~~~i~~~i~a~d~~dl~~~~i~~~~~ 131 (339)
+||+|||++|++|.||+|||||.+|++.|+| +..++||++.+||+++.+.++++
T Consensus 88 vFI~w~Pd~a~vk~KMlYAssK~~lk~~l~g--i~~~iqatd~~el~~~~~~~~~~ 141 (141)
T PLN03216 88 FFIAWSPEASRIRAKMLYATSKDGLRRVLDG--VHYELQATDPTEMGFDVIRDRAK 141 (141)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHHhcC--CeEEEEECChHhcCHHHHHHHhC
Confidence 9999999999999999999999999999998 67899999999999999988763
No 4
>cd00013 ADF Actin depolymerisation factor/cofilin -like domains; present in a family of essential eukaryotic actin regulatory proteins; these proteins enhance the turnover rate of actin and interact with actin monomers as well as actin filaments.
Probab=99.97 E-value=1.7e-30 Score=218.05 Aligned_cols=129 Identities=32% Similarity=0.564 Sum_probs=119.0
Q ss_pred CccccccChhHHHHHHHHHcC-CccEEEEEEeCCCceEEEeecCCC--CcccccccCCCCCCeEEEEeeeeecCCceece
Q psy14919 170 SGVAFPLLPDAESSVHKLIKA-KYNYVQFRIDLQEETINLVQSGEV--TLKQLPSMIPTDSARYHLFNFRHEFEGKIIDS 246 (339)
Q Consensus 170 sgv~~~~s~e~~~~~~~lk~~-~~~~v~~ki~~~~e~I~l~~~~~~--~~~~l~~~Lp~~~prY~vy~~~~~~~g~~~~k 246 (339)
|||. ++++|.++|++|+.+ +++||+|+|+.++++|+|+.++.. ++++|.+.||+++|||++|+++++++|+.+++
T Consensus 1 sgi~--i~~e~~~a~~~~~~~~~~~~vi~~i~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~y~~~~~~~~~~~~~~~k 78 (132)
T cd00013 1 SGIK--VSDECKEAFEELKSGKKTRWIIFKIDDDKKEIVVEKTGEGGESFDEFVEELPEDECRYALYDYDFTTEGSKKSK 78 (132)
T ss_pred CCce--ECHHHHHHHHHHHhCCceeEEEEEEcCCCCEEEEEecCCCCCCHHHHHHhCCcCCceEEEEEecccCCCccccC
Confidence 5667 999999999999976 689999999988899999988754 89999999999999999999999888888999
Q ss_pred EEEEEEeCCCCCCcccceeeecchHHHHHHhhhcCcceeEEEEeCCCCCCCHHHHHhhc
Q psy14919 247 VVFIYSMPGYSLPIKERMLYSSCKAPLLENLHHLGLTIDKKLEIDSGSELTEEFLLEEL 305 (339)
Q Consensus 247 ~vFI~w~P~~~a~vk~KMlYAssk~~~~~~l~~~~i~i~~~ie~~d~~el~~~~i~~~l 305 (339)
++||+|||+ +||+|.||+|||+|.+|++.|. ++.+.+++++.+||+++.|.++|
T Consensus 79 ~vfI~w~P~-~a~~k~km~yas~k~~l~~~l~----~~~~~i~a~~~~dl~~~~i~~kl 132 (132)
T cd00013 79 IVFIYWSPE-TAPVKSKMLYASSKAALKRELV----GIQVEVQATDPDELDEEALLEKL 132 (132)
T ss_pred EEEEEECCC-CCChhhhhhhHHHHHHHHHhcC----CceEEEEECChhhcCHHHHHhhC
Confidence 999999999 9999999999999999999997 45778999999999999998875
No 5
>KOG1735|consensus
Probab=99.97 E-value=7.5e-31 Score=218.97 Aligned_cols=133 Identities=27% Similarity=0.450 Sum_probs=120.9
Q ss_pred cCccccccChhHHHHHHHHHcCC-ccEEEEEEeCCCceEEEeecC--CCCcccccccCC---CCCCeEEEEeeeeecCC-
Q psy14919 169 LSGVAFPLLPDAESSVHKLIKAK-YNYVQFRIDLQEETINLVQSG--EVTLKQLPSMIP---TDSARYHLFNFRHEFEG- 241 (339)
Q Consensus 169 ~sgv~~~~s~e~~~~~~~lk~~~-~~~v~~ki~~~~e~I~l~~~~--~~~~~~l~~~Lp---~~~prY~vy~~~~~~~g- 241 (339)
.|||+ ++|+|+.+|++|+.++ ++||+|+|+.++..|++++.+ +.++++|...|| .++|||++||+++++.+
T Consensus 2 aSGv~--Vsde~~~~F~elk~kk~~r~ivF~i~~~~~~i~ve~~g~~~~s~~~f~~~l~~~~~~dCrYA~yDf~f~t~~~ 79 (146)
T KOG1735|consen 2 ASGVA--VSDECKKVFNELKVKKRKRYVVFKISEDKKQIIVEKGGSPGASYDDFVASLPKMPEKDCRYALYDFEFETKES 79 (146)
T ss_pred CcceE--ecHHHHHHHHHHHhhcceeEEEEEeccccccccccccCCCCCchhhhHHHhccCCccccceEEecceEEeecc
Confidence 48999 9999999999999655 999999999888889998865 559999999999 99999999999998733
Q ss_pred --ceeceEEEEEEeCCCCCCcccceeeecchHHHHHHhhhcCcceeEEEEeCCCCCCCHHHHHhhcCCC
Q psy14919 242 --KIIDSVVFIYSMPGYSLPIKERMLYSSCKAPLLENLHHLGLTIDKKLEIDSGSELTEEFLLEELHPK 308 (339)
Q Consensus 242 --~~~~k~vFI~w~P~~~a~vk~KMlYAssk~~~~~~l~~~~i~i~~~ie~~d~~el~~~~i~~~l~p~ 308 (339)
...+|++||.|||+ +||||+||+|||||++|++.|. +|.+.+|++|++|++.+.|.++|.+.
T Consensus 80 g~~~~~Ki~f~~wsPd-~a~vKsKMiYaSSkDalkr~L~----Gi~~elQatd~~E~~~~~~~ekl~~~ 143 (146)
T KOG1735|consen 80 GNCKKSKIFFIAWSPD-TAPVKSKMIYASSKDALKRELT----GIQHELQATDPSEMSLDSLAEKLGGS 143 (146)
T ss_pred ccceeeeEEEEEECCC-ccchhhheeehhhHHHHhhhcc----CceeeeecCChHHhhHHHHHHHhccc
Confidence 36899999999999 9999999999999999999996 67788999999999999999999764
No 6
>PF00241 Cofilin_ADF: Cofilin/tropomyosin-type actin-binding protein; InterPro: IPR002108 The actin-depolymerising factor homology (ADF-H) domain is an ~150-amino acid motif that is present in three phylogenetically distinct classes of eukaryotic actin-binding proteins [, , ]: ADF/cofilins, which include ADF, cofilin, destrin, actophorin, coactosin, depactin and glia maturation factors (GMFs) beta and gamma. ADF/cofilins are small actin-binding proteins composed of a single ADF-H domain. They bind both actin-monomers and filaments and promote rapid filament turnover in cells by depolymerising/fragmenting actin filaments. ADF/cofilins bind ADP-actin with higher affinity than ATP-actin and inhibit the spontaneous nucleotide exchange on actin monomers Twinfilins, which are actin monomer-binding proteins that are composed of two ADF-H domains Abp1/Drebrins, which are relatively large proteins composed of an N-terminal ADF-H domain followed by a variable region and a C-terminal SH3 domain. Abp1/Drebrins interact only with actin filaments and do not promote filament depolymerisation or fragmentation Although these proteins are biochemically distinct and play different roles in actin dynamics, they all appear to use the ADF-H domain for their interactions with actin. The ADF-H domain consists of a six-stranded mixed beta-sheet in which the four central strands (beta2-beta5) are anti-parallel and the two edge strands (beta1 and beta6) run parallel with the neighbouring strands. The sheet is surrounded by two alpha-helices on each side [, , ].; GO: 0003779 actin binding, 0005622 intracellular; PDB: 1AK6_A 1AK7_A 1V6F_A 2L72_A 1CFY_A 1QPV_A 1COF_A 1TVJ_A 1X67_A 3L50_A ....
Probab=99.96 E-value=1.3e-29 Score=211.43 Aligned_cols=124 Identities=32% Similarity=0.559 Sum_probs=114.6
Q ss_pred hhHHHHHHHHHcC-CccEEEEEEeCCCceEEEeecC--CCCcccccccCCCCCCeEEEEeeeeecCCceeceEEEEEEeC
Q psy14919 178 PDAESSVHKLIKA-KYNYVQFRIDLQEETINLVQSG--EVTLKQLPSMIPTDSARYHLFNFRHEFEGKIIDSVVFIYSMP 254 (339)
Q Consensus 178 ~e~~~~~~~lk~~-~~~~v~~ki~~~~e~I~l~~~~--~~~~~~l~~~Lp~~~prY~vy~~~~~~~g~~~~k~vFI~w~P 254 (339)
|+|.++|++|+.+ .++||+|+|+.++++|+|++.+ ..++++|.+.||+++|||++|++.++++|+.+++++||+|||
T Consensus 1 ~e~~~~~~~~~~~~~~~~i~~~i~~~~~~i~v~~~g~~~~~~~el~~~l~~~~p~y~~~~~~~~~~~~~~~k~vfI~w~P 80 (127)
T PF00241_consen 1 DECKAAFQELKSKKSTRWIIFKIDDEKEEIVVEKSGSEGGSFDELLSHLPDDEPRYILYRFEYTHKGSRRSKLVFIYWCP 80 (127)
T ss_dssp HHHHHHHHHHHTTTSCSEEEEEEETTSTEEEEEEEEEESSHHHHHHHCSCTTSEEEEEEEEEEEETTSEEEEEEEEEEES
T ss_pred CHHHHHHHHHHcCCCceEEEEEEeCCCcEEEEEeccCCCCCHHHHHHhcccCCcEEEEEEeeecccCCCCceEEEEEEec
Confidence 6899999999965 4999999999988999999886 779999999999999999999999999999999999999999
Q ss_pred CCCCCcccceeeecchHHHHHHhhhcCcceeEEEEeCCCCCCCHHHHHhhcC
Q psy14919 255 GYSLPIKERMLYSSCKAPLLENLHHLGLTIDKKLEIDSGSELTEEFLLEELH 306 (339)
Q Consensus 255 ~~~a~vk~KMlYAssk~~~~~~l~~~~i~i~~~ie~~d~~el~~~~i~~~l~ 306 (339)
+ +||+|+||+|||+|.+|++.|++ +...++++|++||+++.|.++++
T Consensus 81 ~-~~~vk~km~yas~k~~l~~~l~~----~~~~~~~~d~~dl~~~~i~~kl~ 127 (127)
T PF00241_consen 81 D-NAPVKEKMLYASSKASLKKKLGG----IHIEIQASDPDDLSEEEILEKLK 127 (127)
T ss_dssp T-TS-HHHHHHHHHHHHHHHHHCTT----EEEEEEESSGGGGSHHHHHHHH-
T ss_pred C-CccHHHhhhhHHhHHHHHHHhCC----ceEEEEECChHHCCHHHHHHhhC
Confidence 9 99999999999999999999983 66789999999999999999873
No 7
>smart00102 ADF Actin depolymerisation factor/cofilin -like domains. Severs actin filaments and binds to actin monomers.
Probab=99.96 E-value=7e-29 Score=207.21 Aligned_cols=124 Identities=29% Similarity=0.514 Sum_probs=113.2
Q ss_pred hhHHHHHHHHHcCC-ccEEEEEEeCCCceEEEeecC--CCCcccccccCCCCCCeEEEEeeeeecCCceeceEEEEEEeC
Q psy14919 178 PDAESSVHKLIKAK-YNYVQFRIDLQEETINLVQSG--EVTLKQLPSMIPTDSARYHLFNFRHEFEGKIIDSVVFIYSMP 254 (339)
Q Consensus 178 ~e~~~~~~~lk~~~-~~~v~~ki~~~~e~I~l~~~~--~~~~~~l~~~Lp~~~prY~vy~~~~~~~g~~~~k~vFI~w~P 254 (339)
++|.++|++|+.++ ++||+|+|+.++++|+|+.++ +.++++|.+.||+++|||++|+++++++|+.+++++||+|||
T Consensus 1 ~~~~~~~~~~~~~~~~~~vi~~i~~~~~~i~v~~~~~~~~~~~el~~~l~~~~~ry~~~~~~~~~~~~~~~k~vfI~w~P 80 (127)
T smart00102 1 EDCKEAFNELKKKRKHSAIIFKIDKDNEEIVVEEVGSTEDSYDEFVEELPEDECRYALYDYKFTTEESKKSKIVFIFWSP 80 (127)
T ss_pred ChHHHHHHHHHcCCCceEEEEEEecCCCEEEEEecCCCCCCHHHHHHhCCccCceEEEEEeecccCCCccccEEEEEECC
Confidence 47999999999654 899999999989999998875 458999999999999999999999988777899999999999
Q ss_pred CCCCCcccceeeecchHHHHHHhhhcCcceeEEEEeCCCCCCCHHHHHhhcC
Q psy14919 255 GYSLPIKERMLYSSCKAPLLENLHHLGLTIDKKLEIDSGSELTEEFLLEELH 306 (339)
Q Consensus 255 ~~~a~vk~KMlYAssk~~~~~~l~~~~i~i~~~ie~~d~~el~~~~i~~~l~ 306 (339)
+ +||+|.||+|||+|.+|++.|++ +...|++++.+||+++.|.++|+
T Consensus 81 ~-~a~~~~km~yas~k~~l~~~l~~----~~~~i~~~~~~el~~~~i~~kl~ 127 (127)
T smart00102 81 D-GAPVKSKMLYASSKDTLKKELGG----IQVEVQATDEDDLDEEALKEKLK 127 (127)
T ss_pred C-CCCHHHHHHHHHHHHHHHHHcCC----ceEEEEECChhhcCHHHHHHHhC
Confidence 9 99999999999999999999983 45679999999999999999874
No 8
>PF00241 Cofilin_ADF: Cofilin/tropomyosin-type actin-binding protein; InterPro: IPR002108 The actin-depolymerising factor homology (ADF-H) domain is an ~150-amino acid motif that is present in three phylogenetically distinct classes of eukaryotic actin-binding proteins [, , ]: ADF/cofilins, which include ADF, cofilin, destrin, actophorin, coactosin, depactin and glia maturation factors (GMFs) beta and gamma. ADF/cofilins are small actin-binding proteins composed of a single ADF-H domain. They bind both actin-monomers and filaments and promote rapid filament turnover in cells by depolymerising/fragmenting actin filaments. ADF/cofilins bind ADP-actin with higher affinity than ATP-actin and inhibit the spontaneous nucleotide exchange on actin monomers Twinfilins, which are actin monomer-binding proteins that are composed of two ADF-H domains Abp1/Drebrins, which are relatively large proteins composed of an N-terminal ADF-H domain followed by a variable region and a C-terminal SH3 domain. Abp1/Drebrins interact only with actin filaments and do not promote filament depolymerisation or fragmentation Although these proteins are biochemically distinct and play different roles in actin dynamics, they all appear to use the ADF-H domain for their interactions with actin. The ADF-H domain consists of a six-stranded mixed beta-sheet in which the four central strands (beta2-beta5) are anti-parallel and the two edge strands (beta1 and beta6) run parallel with the neighbouring strands. The sheet is surrounded by two alpha-helices on each side [, , ].; GO: 0003779 actin binding, 0005622 intracellular; PDB: 1AK6_A 1AK7_A 1V6F_A 2L72_A 1CFY_A 1QPV_A 1COF_A 1TVJ_A 1X67_A 3L50_A ....
Probab=99.95 E-value=9e-28 Score=200.22 Aligned_cols=123 Identities=31% Similarity=0.590 Sum_probs=109.2
Q ss_pred hhHHHHHHccccCC-eeEEEEEEeCC--EEEEeeeeccCCCccCChhhhchhccCCCCcEEEEEEeeecCCCC-ceeEEE
Q psy14919 2 EALKKFFGSIRDEK-IRVFKVSIENE--ALVLAGYKKVVGTWTQDFDKYVPDLIQEAQPCYILYRFDSKNETG-GHDWLL 77 (339)
Q Consensus 2 ~e~~~af~~~~~~~-~r~ii~~i~~e--~i~v~~~~~~~~~~~~d~~~l~~~~l~~~~p~Y~ly~~~~~~~~g-~~klvf 77 (339)
|+|+++|++++.++ ++|++|+|+++ +|+|+++|..+ .+|++|++. |++++|||++||+.+.+..+ +.+++|
T Consensus 1 ~e~~~~~~~~~~~~~~~~i~~~i~~~~~~i~v~~~g~~~----~~~~el~~~-l~~~~p~y~~~~~~~~~~~~~~~k~vf 75 (127)
T PF00241_consen 1 DECKAAFQELKSKKSTRWIIFKIDDEKEEIVVEKSGSEG----GSFDELLSH-LPDDEPRYILYRFEYTHKGSRRSKLVF 75 (127)
T ss_dssp HHHHHHHHHHHTTTSCSEEEEEEETTSTEEEEEEEEEES----SHHHHHHHC-SCTTSEEEEEEEEEEEETTSEEEEEEE
T ss_pred CHHHHHHHHHHcCCCceEEEEEEeCCCcEEEEEeccCCC----CCHHHHHHh-cccCCcEEEEEEeeecccCCCCceEEE
Confidence 68999999999974 99999999875 89999887332 579999775 89999999999999887644 489999
Q ss_pred EEEcCCCchhhhHHHHhhcHHHHHhHhCCCceeEEEEEeCcccCChhHHHhhhh
Q psy14919 78 IFWSPDDSPVRQKMLYASTKSTLKQDFGSGQIKEEIHATVPVDVTLHGYELHKR 131 (339)
Q Consensus 78 I~w~Pd~a~ik~KMlYASsk~~l~~~l~~~~i~~~i~a~d~~dl~~~~i~~~~~ 131 (339)
|+|||++||+|+||+|||++.+|++.|++ +...+++++++||+++.|.++++
T Consensus 76 I~w~P~~~~vk~km~yas~k~~l~~~l~~--~~~~~~~~d~~dl~~~~i~~kl~ 127 (127)
T PF00241_consen 76 IYWCPDNAPVKEKMLYASSKASLKKKLGG--IHIEIQASDPDDLSEEEILEKLK 127 (127)
T ss_dssp EEEESTTS-HHHHHHHHHHHHHHHHHCTT--EEEEEEESSGGGGSHHHHHHHH-
T ss_pred EEEecCCccHHHhhhhHHhHHHHHHHhCC--ceEEEEECChHHCCHHHHHHhhC
Confidence 99999999999999999999999999999 77899999999999999999874
No 9
>KOG1735|consensus
Probab=99.95 E-value=1.1e-27 Score=199.96 Aligned_cols=125 Identities=29% Similarity=0.539 Sum_probs=110.9
Q ss_pred ChhHHHHHHccccCC-eeEEEEEEeC--CEEEEeeeeccCCCccCChhhhchhccC---CCCcEEEEEEeeecC-CCC--
Q psy14919 1 NEALKKFFGSIRDEK-IRVFKVSIEN--EALVLAGYKKVVGTWTQDFDKYVPDLIQ---EAQPCYILYRFDSKN-ETG-- 71 (339)
Q Consensus 1 s~e~~~af~~~~~~~-~r~ii~~i~~--e~i~v~~~~~~~~~~~~d~~~l~~~~l~---~~~p~Y~ly~~~~~~-~~g-- 71 (339)
+|+|+..|++++.++ +|+++|.|++ .+|++++.|.++ .+|++|+.. |+ .++|||++||+++.+ .+|
T Consensus 8 sde~~~~F~elk~kk~~r~ivF~i~~~~~~i~ve~~g~~~----~s~~~f~~~-l~~~~~~dCrYA~yDf~f~t~~~g~~ 82 (146)
T KOG1735|consen 8 SDECKKVFNELKVKKRKRYVVFKISEDKKQIIVEKGGSPG----ASYDDFVAS-LPKMPEKDCRYALYDFEFETKESGNC 82 (146)
T ss_pred cHHHHHHHHHHHhhcceeEEEEEeccccccccccccCCCC----CchhhhHHH-hccCCccccceEEecceEEeeccccc
Confidence 689999999999976 9999999976 578888877665 457777665 55 999999999999987 554
Q ss_pred -ceeEEEEEEcCCCchhhhHHHHhhcHHHHHhHhCCCceeEEEEEeCcccCChhHHHhhhhh
Q psy14919 72 -GHDWLLIFWSPDDSPVRQKMLYASTKSTLKQDFGSGQIKEEIHATVPVDVTLHGYELHKRA 132 (339)
Q Consensus 72 -~~klvfI~w~Pd~a~ik~KMlYASsk~~l~~~l~~~~i~~~i~a~d~~dl~~~~i~~~~~~ 132 (339)
..|++||.|||++||+|+||+||||+++|+++|.| +++++||++++|++++.+.+++..
T Consensus 83 ~~~Ki~f~~wsPd~a~vKsKMiYaSSkDalkr~L~G--i~~elQatd~~E~~~~~~~ekl~~ 142 (146)
T KOG1735|consen 83 KKSKIFFIAWSPDTAPVKSKMIYASSKDALKRELTG--IQHELQATDPSEMSLDSLAEKLGG 142 (146)
T ss_pred eeeeEEEEEECCCccchhhheeehhhHHHHhhhccC--ceeeeecCChHHhhHHHHHHHhcc
Confidence 38999999999999999999999999999999998 889999999999999999988854
No 10
>PTZ00152 cofilin/actin-depolymerizing factor 1-like protein; Provisional
Probab=99.94 E-value=6.8e-28 Score=198.89 Aligned_cols=111 Identities=22% Similarity=0.355 Sum_probs=94.9
Q ss_pred cCccccccChhHHHHHHHHHcC-CccEEEEEEeCCCceEEEeecC-CCCcccccccCCCCC---CeEEEEeeeeecCCce
Q psy14919 169 LSGVAFPLLPDAESSVHKLIKA-KYNYVQFRIDLQEETINLVQSG-EVTLKQLPSMIPTDS---ARYHLFNFRHEFEGKI 243 (339)
Q Consensus 169 ~sgv~~~~s~e~~~~~~~lk~~-~~~~v~~ki~~~~e~I~l~~~~-~~~~~~l~~~Lp~~~---prY~vy~~~~~~~g~~ 243 (339)
+|||. ++++|.++|++|+.+ +++||+|+|+ +++|+|++.+ ..+|++|.+.||+++ |||+||++.
T Consensus 2 ~SGi~--v~de~~~~f~~lk~~k~~r~iifkI~--~~~Ivv~~~~~~~~~~e~~~~L~~~~~~~crY~vyd~~------- 70 (122)
T PTZ00152 2 ISGIR--VNDNCVTEFNNMKIRKTCRWIIFVIE--NCEIIIHSKGATTTLTELVGSIDKNDKIQCAYVVFDAV------- 70 (122)
T ss_pred CCCcC--cCHHHHHHHHHHhcCCcceEEEEEEc--CcEEEEEecCCCCCHHHHHHhccccCCCCceEEEEccC-------
Confidence 47888 999999999999965 4899999996 4789998775 458999999999998 999999984
Q ss_pred eceEEEEEEeCCCCCCcccceeeecchHHHHHHhhh-cCcceeEEEEeCCCCCC
Q psy14919 244 IDSVVFIYSMPGYSLPIKERMLYSSCKAPLLENLHH-LGLTIDKKLEIDSGSEL 296 (339)
Q Consensus 244 ~~k~vFI~w~P~~~a~vk~KMlYAssk~~~~~~l~~-~~i~i~~~ie~~d~~el 296 (339)
++++||+|||+ +||||.||||||||++|+++|+| .++ ..|+++.+||
T Consensus 71 -~klvFI~w~Pd-~a~ik~KMlYASsK~~l~~~l~Gi~~~----~~~~~~~~~~ 118 (122)
T PTZ00152 71 -NKIHFFMYARE-SSNSRDRMTYASSKQALLKKIEGVNVL----TSVIESAQDV 118 (122)
T ss_pred -CCEEEEEECCC-CCChHHhhhhHhHHHHHHHHhcchhHH----HHHHHHhhhh
Confidence 57999999999 99999999999999999999985 222 2466666655
No 11
>cd00013 ADF Actin depolymerisation factor/cofilin -like domains; present in a family of essential eukaryotic actin regulatory proteins; these proteins enhance the turnover rate of actin and interact with actin monomers as well as actin filaments.
Probab=99.94 E-value=1.5e-26 Score=194.00 Aligned_cols=123 Identities=28% Similarity=0.521 Sum_probs=109.0
Q ss_pred ChhHHHHHHccccC-CeeEEEEEEeC--CEEEEeeeeccCCCccCChhhhchhccCCCCcEEEEEEeeecCCCC-ceeEE
Q psy14919 1 NEALKKFFGSIRDE-KIRVFKVSIEN--EALVLAGYKKVVGTWTQDFDKYVPDLIQEAQPCYILYRFDSKNETG-GHDWL 76 (339)
Q Consensus 1 s~e~~~af~~~~~~-~~r~ii~~i~~--e~i~v~~~~~~~~~~~~d~~~l~~~~l~~~~p~Y~ly~~~~~~~~g-~~klv 76 (339)
+++|.++|++++.+ +++|++|+|++ ++|++++++.++ .+|++|++. |++++|||++||+++.+..+ +.+++
T Consensus 6 ~~e~~~a~~~~~~~~~~~~vi~~i~~~~~~i~~~~~~~~~----~~~~~l~~~-l~~~~~~y~~~~~~~~~~~~~~~k~v 80 (132)
T cd00013 6 SDECKEAFEELKSGKKTRWIIFKIDDDKKEIVVEKTGEGG----ESFDEFVEE-LPEDECRYALYDYDFTTEGSKKSKIV 80 (132)
T ss_pred CHHHHHHHHHHHhCCceeEEEEEEcCCCCEEEEEecCCCC----CCHHHHHHh-CCcCCceEEEEEecccCCCccccCEE
Confidence 58999999999987 59999999987 789998877642 369999875 99999999999999876421 38999
Q ss_pred EEEEcCCCchhhhHHHHhhcHHHHHhHhCCCceeEEEEEeCcccCChhHHHhhh
Q psy14919 77 LIFWSPDDSPVRQKMLYASTKSTLKQDFGSGQIKEEIHATVPVDVTLHGYELHK 130 (339)
Q Consensus 77 fI~w~Pd~a~ik~KMlYASsk~~l~~~l~~~~i~~~i~a~d~~dl~~~~i~~~~ 130 (339)
||+|||++|++|.||+|||++.+|++.++| ++..+++++.+||+++.+.+++
T Consensus 81 fI~w~P~~a~~k~km~yas~k~~l~~~l~~--~~~~i~a~~~~dl~~~~i~~kl 132 (132)
T cd00013 81 FIYWSPETAPVKSKMLYASSKAALKRELVG--IQVEVQATDPDELDEEALLEKL 132 (132)
T ss_pred EEEECCCCCChhhhhhhHHHHHHHHHhcCC--ceEEEEECChhhcCHHHHHhhC
Confidence 999999999999999999999999999998 6789999999999999998764
No 12
>smart00102 ADF Actin depolymerisation factor/cofilin -like domains. Severs actin filaments and binds to actin monomers.
Probab=99.94 E-value=2.6e-26 Score=191.69 Aligned_cols=122 Identities=30% Similarity=0.561 Sum_probs=107.7
Q ss_pred hhHHHHHHccccCC-eeEEEEEEeC--CEEEEeeeeccCCCccCChhhhchhccCCCCcEEEEEEeeecCCCC-ceeEEE
Q psy14919 2 EALKKFFGSIRDEK-IRVFKVSIEN--EALVLAGYKKVVGTWTQDFDKYVPDLIQEAQPCYILYRFDSKNETG-GHDWLL 77 (339)
Q Consensus 2 ~e~~~af~~~~~~~-~r~ii~~i~~--e~i~v~~~~~~~~~~~~d~~~l~~~~l~~~~p~Y~ly~~~~~~~~g-~~klvf 77 (339)
++|.++|++++.++ .+|++|+|+. ++|+|+.++.. +.+|++|++. |++++|||++||+++.+.++ +.+++|
T Consensus 1 ~~~~~~~~~~~~~~~~~~vi~~i~~~~~~i~v~~~~~~----~~~~~el~~~-l~~~~~ry~~~~~~~~~~~~~~~k~vf 75 (127)
T smart00102 1 EDCKEAFNELKKKRKHSAIIFKIDKDNEEIVVEEVGST----EDSYDEFVEE-LPEDECRYALYDYKFTTEESKKSKIVF 75 (127)
T ss_pred ChHHHHHHHHHcCCCceEEEEEEecCCCEEEEEecCCC----CCCHHHHHHh-CCccCceEEEEEeecccCCCccccEEE
Confidence 57999999999865 9999999974 68999887532 2579999876 89999999999999886544 489999
Q ss_pred EEEcCCCchhhhHHHHhhcHHHHHhHhCCCceeEEEEEeCcccCChhHHHhhh
Q psy14919 78 IFWSPDDSPVRQKMLYASTKSTLKQDFGSGQIKEEIHATVPVDVTLHGYELHK 130 (339)
Q Consensus 78 I~w~Pd~a~ik~KMlYASsk~~l~~~l~~~~i~~~i~a~d~~dl~~~~i~~~~ 130 (339)
|+|||++|++|.||+|||++.+|++.|+| ++..+++++.+||+++.|.+++
T Consensus 76 I~w~P~~a~~~~km~yas~k~~l~~~l~~--~~~~i~~~~~~el~~~~i~~kl 126 (127)
T smart00102 76 IFWSPDGAPVKSKMLYASSKDTLKKELGG--IQVEVQATDEDDLDEEALKEKL 126 (127)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHHHcCC--ceEEEEECChhhcCHHHHHHHh
Confidence 99999999999999999999999999998 6678999999999999999876
No 13
>PTZ00152 cofilin/actin-depolymerizing factor 1-like protein; Provisional
Probab=99.91 E-value=3.1e-24 Score=177.11 Aligned_cols=93 Identities=19% Similarity=0.326 Sum_probs=83.7
Q ss_pred ChhHHHHHHccccCC-eeEEEEEEeCCEEEEeeeeccCCCccCChhhhchhccCCCC---cEEEEEEeeecCCCCceeEE
Q psy14919 1 NEALKKFFGSIRDEK-IRVFKVSIENEALVLAGYKKVVGTWTQDFDKYVPDLIQEAQ---PCYILYRFDSKNETGGHDWL 76 (339)
Q Consensus 1 s~e~~~af~~~~~~~-~r~ii~~i~~e~i~v~~~~~~~~~~~~d~~~l~~~~l~~~~---p~Y~ly~~~~~~~~g~~klv 76 (339)
+++|.++|++++.++ +|||+|+|++++|+|++.++. .+|++|++. |++++ |||++|+++ .+|+
T Consensus 8 ~de~~~~f~~lk~~k~~r~iifkI~~~~Ivv~~~~~~-----~~~~e~~~~-L~~~~~~~crY~vyd~~-------~klv 74 (122)
T PTZ00152 8 NDNCVTEFNNMKIRKTCRWIIFVIENCEIIIHSKGAT-----TTLTELVGS-IDKNDKIQCAYVVFDAV-------NKIH 74 (122)
T ss_pred CHHHHHHHHHHhcCCcceEEEEEEcCcEEEEEecCCC-----CCHHHHHHh-ccccCCCCceEEEEccC-------CCEE
Confidence 589999999999876 999999999899999887653 369999876 78777 999999984 4799
Q ss_pred EEEEcCCCchhhhHHHHhhcHHHHHhHhCC
Q psy14919 77 LIFWSPDDSPVRQKMLYASTKSTLKQDFGS 106 (339)
Q Consensus 77 fI~w~Pd~a~ik~KMlYASsk~~l~~~l~~ 106 (339)
||+|||++|++|.||+|||||++|++.|+|
T Consensus 75 FI~w~Pd~a~ik~KMlYASsK~~l~~~l~G 104 (122)
T PTZ00152 75 FFMYARESSNSRDRMTYASSKQALLKKIEG 104 (122)
T ss_pred EEEECCCCCChHHhhhhHhHHHHHHHHhcc
Confidence 999999999999999999999999999987
No 14
>KOG1736|consensus
Probab=99.88 E-value=1.4e-22 Score=162.38 Aligned_cols=131 Identities=24% Similarity=0.415 Sum_probs=118.4
Q ss_pred CccccccChhHHHHHHHHHc--CC--ccEEEEEEeCCCceEEEeecC--CCCcccccccCCCCCCeEEEEeeeeec-CCc
Q psy14919 170 SGVAFPLLPDAESSVHKLIK--AK--YNYVQFRIDLQEETINLVQSG--EVTLKQLPSMIPTDSARYHLFNFRHEF-EGK 242 (339)
Q Consensus 170 sgv~~~~s~e~~~~~~~lk~--~~--~~~v~~ki~~~~e~I~l~~~~--~~~~~~l~~~Lp~~~prY~vy~~~~~~-~g~ 242 (339)
+-+.|+|+++..+.+++|+- ++ ...+++||+.+...|++++.. .++.++|.+.||+.+|||++|.|++++ +|+
T Consensus 4 ~~~~~~i~~et~~ki~kFR~r~k~t~~~A~imKidK~~~eiV~d~Eeld~is~eEladeLpe~~PRFvl~sYpt~t~DGr 83 (143)
T KOG1736|consen 4 SLVVCKIGTETREKIRKFRFRTKETSNAAIIMKIDKDSYEIVLDEEELDEISPEELADELPERQPRFVLYSYPTTTDDGR 83 (143)
T ss_pred ceeEEEeCHHHHHHHHHhhhhhccccceeEEEEecCCceEeecCHHHhccCChHHHHhhccccCCcEEEEECcccccCCc
Confidence 34678999999999999982 22 679999999988999998653 668899999999999999999999987 799
Q ss_pred eeceEEEEEEeCCCCCCcccceeeecchHHHHHHhhhcCcceeEEEEeCCCCCCCHHHHHhhcC
Q psy14919 243 IIDSVVFIYSMPGYSLPIKERMLYSSCKAPLLENLHHLGLTIDKKLEIDSGSELTEEFLLEELH 306 (339)
Q Consensus 243 ~~~k~vFI~w~P~~~a~vk~KMlYAssk~~~~~~l~~~~i~i~~~ie~~d~~el~~~~i~~~l~ 306 (339)
.+..++||||.|. +++...+|+||++|..|.+.. ++.|.+|+++-+|++++++.++|+
T Consensus 84 ~stPL~~Iyw~P~-~~~~e~~MmYAgak~~~~~~~-----~~~KvfEir~tdD~t~e~l~E~L~ 141 (143)
T KOG1736|consen 84 VSTPLCFIYWSPV-GCKPEQQMMYAGAKNMLVQTA-----ELTKVFEIRSTDDLTEEWLREKLE 141 (143)
T ss_pred ccccEEEEEecCc-cCCHHHHHHHHHHHHHHHHHh-----hheEEEEecccccccHHHHHHHhh
Confidence 9999999999999 999999999999999999998 467889999999999999999986
No 15
>KOG1736|consensus
Probab=99.73 E-value=3.7e-17 Score=131.31 Aligned_cols=123 Identities=20% Similarity=0.270 Sum_probs=102.0
Q ss_pred ChhHHHHHHccccC-C---eeEEEEEEeC--CEEEEeeeeccCCCccCChhhhchhccCCCCcEEEEEEeeecCCCCc--
Q psy14919 1 NEALKKFFGSIRDE-K---IRVFKVSIEN--EALVLAGYKKVVGTWTQDFDKYVPDLIQEAQPCYILYRFDSKNETGG-- 72 (339)
Q Consensus 1 s~e~~~af~~~~~~-~---~r~ii~~i~~--e~i~v~~~~~~~~~~~~d~~~l~~~~l~~~~p~Y~ly~~~~~~~~g~-- 72 (339)
++++.+....||.. + ..+++++|+. ..|++++..-.. ..-+++.. .||+.+|||++|.|.+++.+||
T Consensus 11 ~~et~~ki~kFR~r~k~t~~~A~imKidK~~~eiV~d~Eeld~----is~eElad-eLpe~~PRFvl~sYpt~t~DGr~s 85 (143)
T KOG1736|consen 11 GTETREKIRKFRFRTKETSNAAIIMKIDKDSYEIVLDEEELDE----ISPEELAD-ELPERQPRFVLYSYPTTTDDGRVS 85 (143)
T ss_pred CHHHHHHHHHhhhhhccccceeEEEEecCCceEeecCHHHhcc----CChHHHHh-hccccCCcEEEEECcccccCCccc
Confidence 35777888888764 3 7799999986 367777432111 23457744 5999999999999999999997
Q ss_pred eeEEEEEEcCCCchhhhHHHHhhcHHHHHhHhCCCceeEEEEEeCcccCChhHHHhhhh
Q psy14919 73 HDWLLIFWSPDDSPVRQKMLYASTKSTLKQDFGSGQIKEEIHATVPVDVTLHGYELHKR 131 (339)
Q Consensus 73 ~klvfI~w~Pd~a~ik~KMlYASsk~~l~~~l~~~~i~~~i~a~d~~dl~~~~i~~~~~ 131 (339)
.+++||+|.|-+++.-++|+||++++-|+...+. .+.|++++-+|++.+++.++|.
T Consensus 86 tPL~~Iyw~P~~~~~e~~MmYAgak~~~~~~~~~---~KvfEir~tdD~t~e~l~E~L~ 141 (143)
T KOG1736|consen 86 TPLCFIYWSPVGCKPEQQMMYAGAKNMLVQTAEL---TKVFEIRSTDDLTEEWLREKLE 141 (143)
T ss_pred ccEEEEEecCccCCHHHHHHHHHHHHHHHHHhhh---eEEEEecccccccHHHHHHHhh
Confidence 8999999999999999999999999999999984 5789999999999999999874
No 16
>KOG1747|consensus
Probab=99.68 E-value=3.4e-17 Score=150.47 Aligned_cols=130 Identities=16% Similarity=0.253 Sum_probs=106.6
Q ss_pred ccCccccccChhHHHHHHHHHcCCccEEEEEEeCCCceEEEeecC--CC----Cccccccc-CCCCCCeEEEEeeeeecC
Q psy14919 168 TLSGVAFPLLPDAESSVHKLIKAKYNYVQFRIDLQEETINLVQSG--EV----TLKQLPSM-IPTDSARYHLFNFRHEFE 240 (339)
Q Consensus 168 ~~sgv~~~~s~e~~~~~~~lk~~~~~~v~~ki~~~~e~I~l~~~~--~~----~~~~l~~~-Lp~~~prY~vy~~~~~~~ 240 (339)
+++||. .+.++.+.|++-++|+.|++.+.|+ +|.+.+..+. .. +|+.++.. |.+.+|||++|+.+..
T Consensus 3 ~QtGI~--A~e~l~~~l~~~~~~k~R~ikIvI~--nEql~~~s~~e~~~~w~~D~~~~v~~ll~~~ePcyILyrlds~-- 76 (342)
T KOG1747|consen 3 HQTGIR--ATEALKKFLNEAKNGKLRLIKIVIE--NEQLSPGSTSEPSTSWERDYDKLVLPLLDAREPCYILYRLDSK-- 76 (342)
T ss_pred cccccc--hHHHHHHHHHhcccCceEEEEEEEe--cccccCCccccccccHHHHHHHHHHHhhccCCceEEEEeecCC--
Confidence 467888 8888999999989999998877776 6778776553 12 67776544 5578999999999753
Q ss_pred CceeceEEEEEEeCCCCCCcccceeeecchHHHHHHhhhcCcceeEEEEeCCCCCCCHHHHHhhcCCCC
Q psy14919 241 GKIIDSVVFIYSMPGYSLPIKERMLYSSCKAPLLENLHHLGLTIDKKLEIDSGSELTEEFLLEELHPKK 309 (339)
Q Consensus 241 g~~~~k~vFI~w~P~~~a~vk~KMlYAssk~~~~~~l~~~~i~i~~~ie~~d~~el~~~~i~~~l~p~~ 309 (339)
..+|+||.|+|| +||||+|||||||+++|++.+++ ..|.....+++++||+...+...+.+..
T Consensus 77 ---~~~w~lIs~vPD-~apVR~KMLYAsTrATlkrefG~--~~i~ee~~~T~~~dl~~~~~~k~l~~~~ 139 (342)
T KOG1747|consen 77 ---NAEWLLISWVPD-NAPVRQKMLYASTRATLKREFGG--AYITEELFATDLEDLTLLGYFKSLSSQA 139 (342)
T ss_pred ---CccEEEEEECCC-CChHHHHHHHHHHHHHHHHHhcc--ceeccccccCCHHHhhhHHHHHhhhhcc
Confidence 238999999999 99999999999999999999984 3456889999999999999888776544
No 17
>KOG3655|consensus
Probab=99.23 E-value=5.9e-11 Score=115.57 Aligned_cols=126 Identities=16% Similarity=0.202 Sum_probs=106.0
Q ss_pred hhHHHHHHccccCC--eeEEEEEEeCCEEEEeeeeccCCCccCChhhhchhccCCCCcEEEEEEeeecCCCCceeEEEEE
Q psy14919 2 EALKKFFGSIRDEK--IRVFKVSIENEALVLAGYKKVVGTWTQDFDKYVPDLIQEAQPCYILYRFDSKNETGGHDWLLIF 79 (339)
Q Consensus 2 ~e~~~af~~~~~~~--~r~ii~~i~~e~i~v~~~~~~~~~~~~d~~~l~~~~l~~~~p~Y~ly~~~~~~~~g~~klvfI~ 79 (339)
.+|.++|+.+..+. +.|++|+.++..+++-..+.+. ..|++|+.. +....-.|++.+..... .|+.|||||+
T Consensus 11 aei~aaY~~v~~d~~dt~WaiF~Yeg~s~~~~~~~s~~----~~~~e~~~d-f~~~kv~yg~~rv~D~~-s~l~KfvLI~ 84 (484)
T KOG3655|consen 11 AEIRAAYERVVDDSSDTDWALFTYEGNSNDLKVAGSGE----GGLEEFLGD-FDSGKVMYGFCRVKDPM-SGLPKFVLIN 84 (484)
T ss_pred HHHHHHHHHhhccCCCceeEEEeecCCccceeeecccc----ccHHHHhhh-cccCceeEEEEEecCcc-cCCcceEEEE
Confidence 46899999998865 9999999998776665544332 468999876 77778899999985433 3458999999
Q ss_pred EcCCCchhhhHHHHhhcHHHHHhHhCCCceeEEEEEeCcccCChhHHHhhhhhccC
Q psy14919 80 WSPDDSPVRQKMLYASTKSTLKQDFGSGQIKEEIHATVPVDVTLHGYELHKRAVKA 135 (339)
Q Consensus 80 w~Pd~a~ik~KMlYASsk~~l~~~l~~~~i~~~i~a~d~~dl~~~~i~~~~~~~~~ 135 (339)
||++++++-.|-..|+.+..+++.|.| ++.+|+|.+-+||+.+.|.++|.....
T Consensus 85 W~GE~vp~~Rka~~ath~a~v~~~lkg--~hV~i~Ar~e~Dld~d~i~~~ls~A~g 138 (484)
T KOG3655|consen 85 WIGEGVPVLRKAKCATHKALVKNFLKG--FHVEINARSEEDLDEDAIREKLSKAVG 138 (484)
T ss_pred ecCCccHHHhhhhhcchHHHHHHHhhc--ceEEEeccchhhcCHHHHHHHHHhhhc
Confidence 999999999999999999999999999 667999999999999999999988543
No 18
>KOG3655|consensus
Probab=99.13 E-value=1.9e-10 Score=112.10 Aligned_cols=124 Identities=14% Similarity=0.231 Sum_probs=107.7
Q ss_pred ChhHHHHHHHHHcCC--ccEEEEEEeCCCceEEEeecCCCCcccccccCCCCCCeEEEEeeeeecCCceeceEEEEEEeC
Q psy14919 177 LPDAESSVHKLIKAK--YNYVQFRIDLQEETINLVQSGEVTLKQLPSMIPTDSARYHLFNFRHEFEGKIIDSVVFIYSMP 254 (339)
Q Consensus 177 s~e~~~~~~~lk~~~--~~~v~~ki~~~~e~I~l~~~~~~~~~~l~~~Lp~~~prY~vy~~~~~~~g~~~~k~vFI~w~P 254 (339)
..++.++|..+..+. ..|++|+.+.....+-+...+...+++|.+.+....-.|++.+.... +++..|+|||.||+
T Consensus 10 ~aei~aaY~~v~~d~~dt~WaiF~Yeg~s~~~~~~~s~~~~~~e~~~df~~~kv~yg~~rv~D~--~s~l~KfvLI~W~G 87 (484)
T KOG3655|consen 10 GAEIRAAYERVVDDSSDTDWALFTYEGNSNDLKVAGSGEGGLEEFLGDFDSGKVMYGFCRVKDP--MSGLPKFVLINWIG 87 (484)
T ss_pred HHHHHHHHHHhhccCCCceeEEEeecCCccceeeeccccccHHHHhhhcccCceeEEEEEecCc--ccCCcceEEEEecC
Confidence 456899999998644 89999999876777777777777899999999999999999988654 45579999999999
Q ss_pred CCCCCcccceeeecchHHHHHHhhhcCcceeEEEEeCCCCCCCHHHHHhhcCC
Q psy14919 255 GYSLPIKERMLYSSCKAPLLENLHHLGLTIDKKLEIDSGSELTEEFLLEELHP 307 (339)
Q Consensus 255 ~~~a~vk~KMlYAssk~~~~~~l~~~~i~i~~~ie~~d~~el~~~~i~~~l~p 307 (339)
+ ++++=.|-.+|+.++.+.+.|++++|. |++++-+||+.+.|.++|.-
T Consensus 88 E-~vp~~Rka~~ath~a~v~~~lkg~hV~----i~Ar~e~Dld~d~i~~~ls~ 135 (484)
T KOG3655|consen 88 E-GVPVLRKAKCATHKALVKNFLKGFHVE----INARSEEDLDEDAIREKLSK 135 (484)
T ss_pred C-ccHHHhhhhhcchHHHHHHHhhcceEE----EeccchhhcCHHHHHHHHHh
Confidence 9 899888888899999999999977766 99999999999999999865
No 19
>PF09110 HAND: HAND; InterPro: IPR015194 Nucleosome remodelling is an energy-dependent process that alters histone-DNA interactions within nucleosomes, thereby rendering nucleosomal DNA accessible to regulatory factors. The ATPases involved belong to the SWI2/SNF2 subfamily of DEAD/H-helicases, which contain a conserved ATPase domain characterised by seven motifs. Proteins within this family differ with regard to domain organisation, their associated proteins and the remodelling complex in which they reside. The ATPase ISWI is a member of this family. ISWI can be divided into two regions: an N-terminal region that contains the SWI2/SNF2 ATPase domain, and a C-terminal region that is responsible for substrate recognition. The C-terminal region contains 12 alpha-helices and can be divided into three domains and a spacer region: a HAND domain (named because its 4-helical structure resembles an open hand), a SANT domain (c-Myb DNA-binding like), a spacer helix, and a SLIDE domain (SANT-like but with several insertions). This entry represents the HAND domain, which adopts a secondary structure consisting of four alpha helices, three of which (H2, H3, H4) form an L-like configuration. Helix H2 runs antiparallel to helices H3 and H4, packing closely against helix H4, whilst helix H1 reposes in the concave surface formed by these three helices and runs perpendicular to them. This domain confers DNA and nucleosome binding properties to the protein []. ; GO: 0031491 nucleosome binding, 0043044 ATP-dependent chromatin remodeling, 0016585 chromatin remodeling complex; PDB: 1OFC_X 2Y9Y_A 2Y9Z_A 2NOG_A.
Probab=23.70 E-value=1.4e+02 Score=24.36 Aligned_cols=59 Identities=24% Similarity=0.275 Sum_probs=30.2
Q ss_pred hhhhHHHHhhcHHHHHhHhCCCceeEEEEEeCccc-----CChhHHHhhh----hhccCCCCCCHHHHHHHHH
Q psy14919 86 PVRQKMLYASTKSTLKQDFGSGQIKEEIHATVPVD-----VTLHGYELHK----RAVKAPAPLTSQEEERAEL 149 (339)
Q Consensus 86 ~ik~KMlYASsk~~l~~~l~~~~i~~~i~a~d~~d-----l~~~~i~~~~----~~~~~~~~lt~~E~~~~~~ 149 (339)
|.+.+-||-=-....++.+|- .+...|..+ -+.+....+. ..-....|||++|..+++-
T Consensus 41 PprL~eL~EkE~~~y~K~i~y-----k~~~~d~~~~~~~~~~~~~~e~~~~~eq~~Idna~pLTEEE~~~Ke~ 108 (113)
T PF09110_consen 41 PPRLKELQEKEQLYYKKKIGY-----KVPLDDGKDSYEEEEDEEEREAKRKLEQEKIDNAEPLTEEEEAEKEK 108 (113)
T ss_dssp -HHHHHHHHHHHHHHHHHCT---------CCCHTTTS--SSSTTCHHHHHHHHHHHHHT-SSS-HHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHhCC-----CCCccccccccccccccccHHHHHHHHHhccccCCCCCHHHHHHHHH
Confidence 356677776666677777772 334444433 2222222222 1224567999999888753
Done!