RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14919
(339 letters)
>3daw_B Twinfilin-1, protein A6; actin depolymerisation, actin binding
proteins, cytoskeleton, structural protein/contractIle
protein complex; HET: ATP; 2.55A {Mus musculus} PDB:
2hd7_A
Length = 164
Score = 171 bits (435), Expect = 4e-53
Identities = 83/162 (51%), Positives = 111/162 (68%), Gaps = 1/162 (0%)
Query: 154 SSGQCQISIDTRTQTLSGVAFPLLPDAESSVHKLIKAKYNYVQFRIDLQEETINLVQSGE 213
S S+DT+ QTL GVAFP+ DA ++ KL K + NYVQ ID++ ETI L +
Sbjct: 2 SHHHHHHSMDTKHQTLQGVAFPISRDAFQALEKLSKKQLNYVQLEIDIKNETIILANTEN 61
Query: 214 VTLKQLPSMIPTDSARYHLFNFRHEFEGKIIDSVVFIYSMPGYSLPIKERMLYSSCKAPL 273
L+ LP IP DSARYH F ++H EG ++SVVFIYSMPGY+ I+ERMLYSSCK+PL
Sbjct: 62 TELRDLPKRIPKDSARYHFFLYKHSHEGDYLESVVFIYSMPGYTCSIRERMLYSSCKSPL 121
Query: 274 LENL-HHLGLTIDKKLEIDSGSELTEEFLLEELHPKKTAERP 314
LE + L + + +K+EID+G ELT +FL +E+HPK+ A +
Sbjct: 122 LEIVERQLQMDVIRKIEIDNGDELTADFLYDEVHPKQHAHKQ 163
Score = 55.7 bits (134), Expect = 1e-09
Identities = 23/129 (17%), Positives = 53/129 (41%), Gaps = 14/129 (10%)
Query: 1 NEALKKFFGSIRDEKIR--VFKVSIENEALVLAGYKKVVGTWTQDFDKYVPDLIQEAQPC 58
+ + + +++ ++ I+NE ++LA T +D K +P +
Sbjct: 25 SRDAFQALEKLSKKQLNYVQLEIDIKNETIILA---NTENTELRDLPKRIP----KDSAR 77
Query: 59 YILYRFDSKNETGGHD-WLLIFWSPDDS-PVRQKMLYASTKSTLKQDFGSG---QIKEEI 113
Y + + +E + + I+ P + +R++MLY+S KS L + + +I
Sbjct: 78 YHFFLYKHSHEGDYLESVVFIYSMPGYTCSIRERMLYSSCKSPLLEIVERQLQMDVIRKI 137
Query: 114 HATVPVDVT 122
++T
Sbjct: 138 EIDNGDELT 146
>2d8b_A Twinfilin-1; cell-free protein synthesis, actin-binding protein,
developmental regulation, cellular remodeling,
cytoskeleton, morphology; NMR {Mus musculus}
Length = 166
Score = 167 bits (425), Expect = 1e-51
Identities = 80/156 (51%), Positives = 109/156 (69%), Gaps = 1/156 (0%)
Query: 157 QCQISIDTRTQTLSGVAFPLLPDAESSVHKLIKAKYNYVQFRIDLQEETINLVQSGEVTL 216
Q +S+DT+ QTL GVAFP+ DA ++ KL K + NYVQ ID++ ETI L + L
Sbjct: 10 QTDVSVDTKHQTLQGVAFPISRDAFQALEKLSKKQLNYVQLEIDIKNETIILANTENTEL 69
Query: 217 KQLPSMIPTDSARYHLFNFRHEFEGKIIDSVVFIYSMPGYSLPIKERMLYSSCKAPLLEN 276
+ LP IP DSARYH F ++H EG ++SVVFIYSMPGY+ I+ERMLYSSCK+PLLE
Sbjct: 70 RDLPKRIPKDSARYHFFLYKHSHEGDYLESVVFIYSMPGYTCSIRERMLYSSCKSPLLEI 129
Query: 277 L-HHLGLTIDKKLEIDSGSELTEEFLLEELHPKKTA 311
+ L + + +K+EID+G ELT +FL +E+H ++
Sbjct: 130 VERQLQMDVIRKIEIDNGDELTADFLYDEVHSGPSS 165
Score = 53.5 bits (128), Expect = 7e-09
Identities = 21/129 (16%), Positives = 51/129 (39%), Gaps = 14/129 (10%)
Query: 1 NEALKKFFGSIRDEKIRV--FKVSIENEALVLAGYKKVVGTWTQDFDKYVPDLIQEAQPC 58
+ + + +++ ++ I+NE ++L T + +P I +
Sbjct: 30 SRDAFQALEKLSKKQLNYVQLEIDIKNETIIL------ANTENTELRD-LPKRIPKDSAR 82
Query: 59 YILYRFDSKNETGGHD-WLLIFWSPDDS-PVRQKMLYASTKSTLKQDFGSG---QIKEEI 113
Y + + +E + + I+ P + +R++MLY+S KS L + + +I
Sbjct: 83 YHFFLYKHSHEGDYLESVVFIYSMPGYTCSIRERMLYSSCKSPLLEIVERQLQMDVIRKI 142
Query: 114 HATVPVDVT 122
++T
Sbjct: 143 EIDNGDELT 151
>2w0i_A Twinfilin-2; cytoskeleton, actin-binding, actin binding,
cofilin-like, phosphoprotein, phosphorylation,
transferase, protein tyros kinase-9; 1.8A {Homo sapiens}
Length = 135
Score = 150 bits (381), Expect = 2e-45
Identities = 68/135 (50%), Positives = 95/135 (70%), Gaps = 1/135 (0%)
Query: 173 AFPLLPDAESSVHKLIKAKYNYVQFRIDLQEETINLVQSGEVTLKQLPSMIPTDSARYHL 232
+ PL P+A+ ++ +L + NY+Q ++DL+ ETI LV + + QLPS +P D+ARYH
Sbjct: 1 SMPLQPEAQRALQQLKQKMVNYIQMKLDLERETIELVHTEPTDVAQLPSRVPRDAARYHF 60
Query: 233 FNFRHEFEGKIIDSVVFIYSMPGYSLPIKERMLYSSCKAPLLENL-HHLGLTIDKKLEID 291
F ++H EG ++SVVFIYSMPGY IKERMLYSSCK+ LL+++ L I KK+EI
Sbjct: 61 FLYKHTHEGDPLESVVFIYSMPGYKCSIKERMLYSSCKSRLLDSVEQDFHLEIAKKIEIG 120
Query: 292 SGSELTEEFLLEELH 306
G+ELT EFL +E+H
Sbjct: 121 DGAELTAEFLDDEVH 135
Score = 56.1 bits (135), Expect = 4e-10
Identities = 22/129 (17%), Positives = 49/129 (37%), Gaps = 18/129 (13%)
Query: 2 EALKKFFGSIRDEKIR--VFKVSIENEALVLAGYKKVVGTWTQDFDKYVPDLIQEAQPCY 59
AL++ + + + K+ +E E + L + Q +P + Y
Sbjct: 10 RALQQL----KQKMVNYIQMKLDLERETIELVHTEPT--DVAQ-----LPSRVPRDAARY 58
Query: 60 ILYRFDSKNETGGHD-WLLIFWSPDD-SPVRQKMLYASTKSTLKQDFGSG---QIKEEIH 114
+ + +E + + I+ P ++++MLY+S KS L +I ++I
Sbjct: 59 HFFLYKHTHEGDPLESVVFIYSMPGYKCSIKERMLYSSCKSRLLDSVEQDFHLEIAKKIE 118
Query: 115 ATVPVDVTL 123
++T
Sbjct: 119 IGDGAELTA 127
>1m4j_A A6 gene product, twinfilin; mixed beta-sheet, PAIR of
alpha-helices, structural protein; 1.60A {Mus musculus}
SCOP: d.109.1.2
Length = 142
Score = 139 bits (352), Expect = 5e-41
Identities = 63/132 (47%), Positives = 93/132 (70%), Gaps = 1/132 (0%)
Query: 1 NEALKKFFGSIRDEKIRVFKVSIENEALVLAGYKKVVGTWTQDFDKYVPDLIQEAQPCYI 60
+E +K+ F R+ K R+ K+SIENE LV+ +W QD+D +V L+++ QPCY+
Sbjct: 10 SEDVKEIFARARNGKYRLLKISIENEQLVVGSCSPPSDSWEQDYDSFVLPLLEDKQPCYV 69
Query: 61 LYRFDSKNETGGHDWLLIFWSPDDSPVRQKMLYASTKSTLKQDFGSGQIKEEIHATVPVD 120
L+R DS+N G ++W+ I WSPD S VRQKMLYA+T++TLK++FG G IK+E+ TV D
Sbjct: 70 LFRLDSQNAQG-YEWIFIAWSPDHSHVRQKMLYAATRATLKKEFGGGHIKDEVFGTVKED 128
Query: 121 VTLHGYELHKRA 132
V+LHGY+ + +
Sbjct: 129 VSLHGYKKYLLS 140
Score = 51.2 bits (122), Expect = 3e-08
Identities = 22/143 (15%), Positives = 53/143 (37%), Gaps = 16/143 (11%)
Query: 170 SGVAFPLLPDAESSVHKLIKAKYNYVQFRIDLQEETINLVQSGEVT-------LKQLPSM 222
+G+ D + + KY ++ I+ E + + + + +
Sbjct: 5 TGIQAS--EDVKEIFARARNGKYRLLKISIE--NEQLVVGSCSPPSDSWEQDYDSFVLPL 60
Query: 223 IPTDSARYHLFNFRHEFEGKIIDSVVFIYSMPGYSLPIKERMLYSSCKAPLLENLHHLGL 282
+ Y LF R + + +FI P +S ++++MLY++ +A L + G
Sbjct: 61 LEDKQPCYVLF--RLDSQNAQGYEWIFIAWSPDHS-HVRQKMLYAATRATLKKEFG--GG 115
Query: 283 TIDKKLEIDSGSELTEEFLLEEL 305
I ++ +++ + L
Sbjct: 116 HIKDEVFGTVKEDVSLHGYKKYL 138
>2vac_A Twinfilin-2; transferase, actin binding, phosphorylation,
cofilin-like, cytoskeleton, actin-binding, protein
tyrosine kinase-9; 1.70A {Homo sapiens}
Length = 134
Score = 137 bits (346), Expect = 3e-40
Identities = 64/129 (49%), Positives = 89/129 (68%), Gaps = 1/129 (0%)
Query: 1 NEALKKFFGSIRDEKIRVFKVSIENEALVLAGYKKVVGTWTQDFDKYVPDLIQEAQPCYI 60
E LK+FF R +R+ KV IE+E LVL ++ VG W QD+D+ V L+ QPCY+
Sbjct: 7 TEELKEFFAKARAGSVRLIKVVIEDEQLVLGASQEPVGRWDQDYDRAVLPLLDAQQPCYL 66
Query: 61 LYRFDSKNETGGHDWLLIFWSPDDSPVRQKMLYASTKSTLKQDFGSGQIKEEIHATVPVD 120
LYR DS+N G +WL + WSPD+SPVR KMLYA+T++T+K++FG G IK+E+ TV D
Sbjct: 67 LYRLDSQN-AQGFEWLFLAWSPDNSPVRLKMLYAATRATVKKEFGGGHIKDELFGTVKDD 125
Query: 121 VTLHGYELH 129
++ GY+ H
Sbjct: 126 LSFAGYQKH 134
Score = 51.5 bits (123), Expect = 2e-08
Identities = 22/137 (16%), Positives = 50/137 (36%), Gaps = 16/137 (11%)
Query: 170 SGVAFPLLPDAESSVHKLIKAKYNYVQFRIDLQEETINLVQSGEVT-------LKQLPSM 222
G+ + + K ++ I+ +E + L S E + + +
Sbjct: 2 MGIHAT--EELKEFFAKARAGSVRLIKVVIE--DEQLVLGASQEPVGRWDQDYDRAVLPL 57
Query: 223 IPTDSARYHLFNFRHEFEGKIIDSVVFIYSMPGYSLPIKERMLYSSCKAPLLENLHHLGL 282
+ Y L+ R + + +F+ P S P++ +MLY++ +A + + G
Sbjct: 58 LDAQQPCYLLY--RLDSQNAQGFEWLFLAWSPDNS-PVRLKMLYAATRATVKKEFG--GG 112
Query: 283 TIDKKLEIDSGSELTEE 299
I +L +L+
Sbjct: 113 HIKDELFGTVKDDLSFA 129
>1v6f_A MGMF-beta, GLIA maturation factor, beta; actin binding protein,
cytoskeleton, riken structural genomics/proteomics
initiative, RSGI; NMR {Mus musculus} SCOP: d.109.1.2
Length = 151
Score = 116 bits (292), Expect = 4e-32
Identities = 32/155 (20%), Positives = 70/155 (45%), Gaps = 11/155 (7%)
Query: 162 IDTRTQTLSGVAFPLLPDAESSVHKLIKAK---YNYVQFRIDLQEETINLVQ-SGEVTLK 217
+ + S V + D + K K + +ID E + L + V+
Sbjct: 2 SSGSSGSESLVVCDVAEDLVEKLRKFRFRKETHNAAIIMKIDKDERLVVLDEELEGVSPD 61
Query: 218 QLPSMIPTDSARYHLFNFRHEF-EGKIIDSVVFIYSMPGYSLPIKERMLYSSCKAPLLEN 276
+L +P R+ +++++++ +G++ + FI+S P +++M+Y+ K L++
Sbjct: 62 ELKDELPERQPRFIVYSYKYQHDDGRVSYPLCFIFSSP-VGCKPEQQMMYAGSKNKLVQT 120
Query: 277 LHHLGLTIDKKLEIDSGSELTEEFLLEELHPKKTA 311
+ K EI + +LTEE+L E+L ++
Sbjct: 121 AE-----LTKVFEIRNTEDLTEEWLREKLGSGPSS 150
Score = 66.6 bits (162), Expect = 1e-13
Identities = 29/124 (23%), Positives = 53/124 (42%), Gaps = 12/124 (9%)
Query: 2 EALKKF-FGSIRDEKIRVFKVSIENEALVLAGYKKVVGTWTQDFDKYVPDLIQEAQPCYI 60
E L+KF F + K+ + +VL +++ G + +P E QP +I
Sbjct: 22 EKLRKFRFRKETHNAAIIMKIDKDERLVVLD--EELEGVSPDELKDELP----ERQPRFI 75
Query: 61 LYRFDSKNETGG--HDWLLIFWSPDDSPVRQKMLYASTKSTLKQDFGSGQIKEEIHATVP 118
+Y + +++ G + IF SP Q+M+YA +K+ L Q + +
Sbjct: 76 VYSYKYQHDDGRVSYPLCFIFSSPVGCKPEQQMMYAGSKNKLVQTAE---LTKVFEIRNT 132
Query: 119 VDVT 122
D+T
Sbjct: 133 EDLT 136
>2kd5_A ADF H, actin severing and dynamics regulatory protein; cofilin,
solution structure, hormone; NMR {Leishmania donovani}
PDB: 2kvk_A
Length = 144
Score = 102 bits (254), Expect = 1e-26
Identities = 28/147 (19%), Positives = 55/147 (37%), Gaps = 10/147 (6%)
Query: 170 SGVAFPLLPDAESSVHKLIKAKYNYVQFRIDLQEETINLVQSGE--VTLKQLPSMIPTDS 227
SGV ++ L K YV I + I + + GE V L T+
Sbjct: 4 SGVTLE--ESVRGAIDDLRMKKSRYVMMCIGADGKKIEVTEVGERSVNYTDLKEKFSTEK 61
Query: 228 ARYHLFNFRHEFEGKIIDSVVFIYSMPGYSLPIKERMLYSSCKAPLLENLHHLGLTIDKK 287
Y F+F + G + ++ I +P + +E+M+YS+ + L
Sbjct: 62 PCYVAFDFEYNDAGSKREKLILIQWIPDTA-RPREKMMYSASRDALSS-----VSEGYLP 115
Query: 288 LEIDSGSELTEEFLLEELHPKKTAERP 314
++ + S L E ++ ++ ++
Sbjct: 116 IQANDESGLDAEEIIRKVRLHRSVAAA 142
Score = 78.5 bits (193), Expect = 6e-18
Identities = 25/142 (17%), Positives = 57/142 (40%), Gaps = 14/142 (9%)
Query: 1 NEALKKFFGSIRDEKIR--VFKVSIENEALVLAGYKKVVGTWTQDFDKYVPDLIQEAQPC 58
E+++ +R +K R + + + + + + + +T +K +PC
Sbjct: 9 EESVRGAIDDLRMKKSRYVMMCIGADGKKIEVTEVGERSVNYTDLKEK-----FSTEKPC 63
Query: 59 YILYRFDSKNETG-GHDWLLIFWSPDDSPVRQKMLYASTKSTLKQDFGSGQIKEEIHATV 117
Y+ + F+ + +LI W PD + R+KM+Y++++ L + I A
Sbjct: 64 YVAFDFEYNDAGSKREKLILIQWIPDTARPREKMMYSASRDALSSVS---EGYLPIQAND 120
Query: 118 PVDVTLHGY--ELH-KRAVKAP 136
+ ++ R+V A
Sbjct: 121 ESGLDAEEIIRKVRLHRSVAAA 142
>2i2q_A Cofilin; N-terminal serine, actin-binding protein; HET: LDA; 1.72A
{Schizosaccharomyces pombe}
Length = 137
Score = 98.1 bits (244), Expect = 2e-25
Identities = 32/135 (23%), Positives = 62/135 (45%), Gaps = 10/135 (7%)
Query: 1 NEALKKFFGSIRDEK-IRVFKVSIENEALVLAGYKKVVGTWTQDFDKYVPDLIQEAQPCY 59
+ + F ++ K +R + + + + +DFD ++ DL E Y
Sbjct: 9 SPECLEAFQELKLGKSLRYVVFKMNDTKTEI---VVEKKSTDKDFDTFLGDL-PEKDCRY 64
Query: 60 ILYRFDSKNETG-GHDWLLIFWSPDDSPVRQKMLYASTKSTLKQDFGSGQIKEEIHATVP 118
+Y F+ G + + I WSPD +P++ KM+Y+S+K TL++ F I +I AT
Sbjct: 65 AIYDFEFNLGEGVRNKIIFISWSPDVAPIKSKMVYSSSKDTLRRAFTG--IGTDIQATDF 122
Query: 119 VDVTLHGY--ELHKR 131
+V ++ ++
Sbjct: 123 SEVAYETVLEKVTRK 137
Score = 75.0 bits (184), Expect = 1e-16
Identities = 33/141 (23%), Positives = 61/141 (43%), Gaps = 9/141 (6%)
Query: 170 SGVAFPLLPDAESSVHKL-IKAKYNYVQFRIDL-QEETINLVQSGEVTLKQLPSMIPTDS 227
SGV P+ + +L + YV F+++ + E + +S + +P
Sbjct: 4 SGVKVS--PECLEAFQELKLGKSLRYVVFKMNDTKTEIVVEKKSTDKDFDTFLGDLPEKD 61
Query: 228 ARYHLFNFRHEFEGKIIDSVVFIYSMPGYSLPIKERMLYSSCKAPLLENLHHLGLTIDKK 287
RY +++F + + ++FI P + PIK +M+YSS K L I
Sbjct: 62 CRYAIYDFEFNLGEGVRNKIIFISWSPDVA-PIKSKMVYSSSKDTLRRAFTG----IGTD 116
Query: 288 LEIDSGSELTEEFLLEELHPK 308
++ SE+ E +LE++ K
Sbjct: 117 IQATDFSEVAYETVLEKVTRK 137
>1vkk_A GMF-gamma, GLIA maturation factor gamma; 15079298, structural GEN
JCSG, protein structure initiative, PSI, joint center
for S genomics; 1.35A {Mus musculus} SCOP: d.109.1.2
PDB: 1wfs_A 3l50_A
Length = 154
Score = 97.1 bits (241), Expect = 1e-24
Identities = 28/152 (18%), Positives = 69/152 (45%), Gaps = 13/152 (8%)
Query: 161 SIDTRTQTLSG--VAFPLLPDAESSVHKLI---KAKYNYVQFRIDLQEETINLVQ-SGEV 214
I +S V + P+ + ++ K + + ++D + + L +
Sbjct: 5 KIHHHHHHMSDSLVVCEVDPELKETLRKFRFRKETNNAAIIMKVDKDRQMVVLEDELQNI 64
Query: 215 TLKQLPSMIPTDSARYHLFNFRHEF-EGKIIDSVVFIYSMPGYSLPIKERMLYSSCKAPL 273
+ ++L +P R+ ++++++ +G++ + FI+S P +++M+Y+ K L
Sbjct: 65 SPEELKLELPERQPRFVVYSYKYVHDDGRVSYPLCFIFSSP-VGCKPEQQMMYAGSKNRL 123
Query: 274 LENLHHLGLTIDKKLEIDSGSELTEEFLLEEL 305
++ + K EI + +LTE +L E+L
Sbjct: 124 VQ-----TAELTKVFEIRTTDDLTETWLKEKL 150
Score = 66.7 bits (162), Expect = 1e-13
Identities = 27/124 (21%), Positives = 52/124 (41%), Gaps = 12/124 (9%)
Query: 2 EALKKF-FGSIRDEKIRVFKVSIENEALVLAGYKKVVGTWTQDFDKYVPDLIQEAQPCYI 60
E L+KF F + + KV + + +VL + + + + E QP ++
Sbjct: 28 ETLRKFRFRKETNNAAIIMKVDKDRQMVVLEDELQNISPEE------LKLELPERQPRFV 81
Query: 61 LYRFDSKNETGG--HDWLLIFWSPDDSPVRQKMLYASTKSTLKQDFGSGQIKEEIHATVP 118
+Y + ++ G + IF SP Q+M+YA +K+ L Q ++ +
Sbjct: 82 VYSYKYVHDDGRVSYPLCFIFSSPVGCKPEQQMMYAGSKNRLVQTA---ELTKVFEIRTT 138
Query: 119 VDVT 122
D+T
Sbjct: 139 DDLT 142
>1f7s_A Actin depolymerizing factor (ADF); KINK in alpha-helix 3, plant
protein; HET: LDA; 2.00A {Arabidopsis thaliana} SCOP:
d.109.1.2
Length = 139
Score = 91.6 bits (227), Expect = 8e-23
Identities = 32/132 (24%), Positives = 60/132 (45%), Gaps = 12/132 (9%)
Query: 1 NEALKKFFGSIRDEK---IRVFKVSIENEALVLAGYKKVVGTWTQDFDKYVPDLIQEAQP 57
++ K F ++ ++ V+K+ + + +V+ VG Q ++++ L +
Sbjct: 11 HDDCKLRFLELKAKRTHRFIVYKIEEKQKQVVVE----KVGQPIQTYEEFAACL-PADEC 65
Query: 58 CYILYRFDSKNETGG--HDWLLIFWSPDDSPVRQKMLYASTKSTLKQDFGSGQIKEEIHA 115
Y +Y FD I W PD + VR KM+YAS+K K++ I+ E+ A
Sbjct: 66 RYAIYDFDFVTAENCQKSKIFFIAWCPDIAKVRSKMIYASSKDRFKRELDG--IQVELQA 123
Query: 116 TVPVDVTLHGYE 127
T P ++ L +
Sbjct: 124 TDPTEMDLDVFR 135
Score = 63.5 bits (154), Expect = 1e-12
Identities = 21/121 (17%), Positives = 54/121 (44%), Gaps = 8/121 (6%)
Query: 189 KAKYNYVQFRIDLQEETINLVQSGEV--TLKQLPSMIPTDSARYHLFNF-RHEFEGKIID 245
K + ++ ++I+ +++ + + + G+ T ++ + +P D RY +++F E
Sbjct: 24 KRTHRFIVYKIEEKQKQVVVEKVGQPIQTYEEFAACLPADECRYAIYDFDFVTAENCQKS 83
Query: 246 SVVFIYSMPGYSLPIKERMLYSSCKAPLLENLHHLGLTIDKKLEIDSGSELTEEFLLEEL 305
+ FI P + ++ +M+Y+S K L I +L+ +E+ +
Sbjct: 84 KIFFIAWCPDIA-KVRSKMIYASSKDRFKRELDG----IQVELQATDPTEMDLDVFRSRA 138
Query: 306 H 306
+
Sbjct: 139 N 139
>2xfa_A Actin depolymerization factor 2; actin binding protein, protein
binding; 2.10A {Plasmodium berghei}
Length = 148
Score = 91.3 bits (226), Expect = 1e-22
Identities = 22/125 (17%), Positives = 51/125 (40%), Gaps = 7/125 (5%)
Query: 1 NEALKKFFGSIRDEKI---RVFKVSIENEALVLAGYKKVVGTWTQDFDKYVPDLIQEAQP 57
++ F ++ + + ++K+ + +V + T + + + ++ +
Sbjct: 13 SDECIYEFNRLKVKHLNKYIIYKIENLEKIVVDVLEHDMELTSLDNIIMRIKNNLKNTEC 72
Query: 58 CYILYRFDSKNETGG--HDWLLIFWSPDDSPVRQKMLYASTKSTLKQDFGSGQIKEEIHA 115
YI+ G IFWSP S ++KMLYA++K +L + I + +
Sbjct: 73 RYIIADMPIPTPEGVLRDRIYFIFWSPGLSKPKEKMLYAASKESLVRKING--IFKSLEI 130
Query: 116 TVPVD 120
T ++
Sbjct: 131 TCDIN 135
Score = 52.0 bits (124), Expect = 2e-08
Identities = 26/119 (21%), Positives = 56/119 (47%), Gaps = 12/119 (10%)
Query: 189 KAKYNYVQFRIDLQEETINLVQSGEV-------TLKQLPSMIPTDSARYHLFNFRHEF-E 240
K Y+ ++I+ E+ + V ++ + ++ + + RY + + E
Sbjct: 26 KHLNKYIIYKIENLEKIVVDVLEHDMELTSLDNIIMRIKNNLKNTECRYIIADMPIPTPE 85
Query: 241 GKIIDSVVFIYSMPGYSLPIKERMLYSSCKAPLLENLHHLGLTIDKKLEIDSGSELTEE 299
G + D + FI+ PG S KE+MLY++ K L+ ++ + +++ +I+ E EE
Sbjct: 86 GVLRDRIYFIFWSPGLS-KPKEKMLYAASKESLVRKINGIFKSLEITCDIN---EFEEE 140
>1cfy_A Cofilin; actin-binding, cytoskeleton, actin-binding protein; 2.30A
{Saccharomyces cerevisiae} SCOP: d.109.1.2 PDB: 1cof_A
1qpv_A
Length = 143
Score = 87.8 bits (217), Expect = 2e-21
Identities = 26/133 (19%), Positives = 51/133 (38%), Gaps = 10/133 (7%)
Query: 1 NEALKKFFGSIRDEK-IRVFKVSIENEALVLAGYKKVVGTWTQDFDKYVPDLIQEAQPCY 59
+ F ++ K + + + + + +D ++ L E Y
Sbjct: 9 ADESLTAFNDLKLGKKYKFILFGLNDAKTEI---VVKETSTDPSYDAFLEKL-PENDCLY 64
Query: 60 ILYRFD---SKNETGGHDWLLIFWSPDDSPVRQKMLYASTKSTLKQDFGSGQIKEEIHAT 116
+Y F+ + NE + WSPD +PVR KM+YAS+K L++ + ++ T
Sbjct: 65 AIYDFEYEINGNEGKRSKIVFFTWSPDTAPVRSKMVYASSKDALRRALNG--VSTDVQGT 122
Query: 117 VPVDVTLHGYELH 129
+V+
Sbjct: 123 DFSEVSYDSVLER 135
Score = 65.8 bits (160), Expect = 2e-13
Identities = 27/146 (18%), Positives = 63/146 (43%), Gaps = 11/146 (7%)
Query: 170 SGVAFPLLPDAESSVHKL-IKAKYNYVQFRIDLQEETINLVQ-SGEVTLKQLPSMIPTDS 227
SGVA ++ ++ + L + KY ++ F ++ + I + + S + + +P +
Sbjct: 4 SGVAVA--DESLTAFNDLKLGKKYKFILFGLNDAKTEIVVKETSTDPSYDAFLEKLPEND 61
Query: 228 ARYHL--FNFRHEFEGKIIDSVVFIYSMPGYSLPIKERMLYSSCKAPLLENLHHLGLTID 285
Y + F + +VF P + P++ +M+Y+S K L L+ +
Sbjct: 62 CLYAIYDFEYEINGNEGKRSKIVFFTWSPDTA-PVRSKMVYASSKDALRRALNG----VS 116
Query: 286 KKLEIDSGSELTEEFLLEELHPKKTA 311
++ SE++ + +LE + +
Sbjct: 117 TDVQGTDFSEVSYDSVLERVSRGAGS 142
>1cnu_A Actophorin, ADF, cofilin; actin-binding protein, contractIle; 2.25A
{Acanthamoeba polyphaga} SCOP: d.109.1.2 PDB: 1ahq_A
Length = 137
Score = 85.8 bits (212), Expect = 1e-20
Identities = 28/136 (20%), Positives = 61/136 (44%), Gaps = 13/136 (9%)
Query: 1 NEALKKFFGSIRDEKIR---VFKVSIENEALVLAGYKKVVGTWTQDFDKYVPDLIQEAQP 57
++ + F ++ FK++ N +V+ + VG ++ + L E
Sbjct: 6 SDDCVQKFNELKLGHQHRYVTFKMNASNTEVVV----EHVGGPNATYEDFKSQL-PERDC 60
Query: 58 CYILYRFDSKNETG-GHDWLLIFWSPDDSPVRQKMLYASTKSTLKQDFGSGQIKEEIHAT 116
Y ++ ++ + + G + I W+PD +P++ KM+Y STK ++K+ I+ E+ AT
Sbjct: 61 RYAIFDYEFQVDGGQRNKITFILWAPDSAPIKSKMMYTSTKDSIKKKLVG--IQVEVQAT 118
Query: 117 VPVDVTLHGY--ELHK 130
+++ K
Sbjct: 119 DAAEISEDAVSERAKK 134
Score = 83.1 bits (205), Expect = 1e-19
Identities = 31/143 (21%), Positives = 65/143 (45%), Gaps = 10/143 (6%)
Query: 170 SGVAFPLLPDAESSVHKL-IKAKYNYVQFRIDLQEETINLVQSGEV--TLKQLPSMIPTD 226
SG+A D ++L + ++ YV F+++ + + G T + S +P
Sbjct: 1 SGIAVS--DDCVQKFNELKLGHQHRYVTFKMNASNTEVVVEHVGGPNATYEDFKSQLPER 58
Query: 227 SARYHLFNFRHEFEGKIIDSVVFIYSMPGYSLPIKERMLYSSCKAPLLENLHHLGLTIDK 286
RY +F++ + +G + + FI P + PIK +M+Y+S K + + L I
Sbjct: 59 DCRYAIFDYEFQVDGGQRNKITFILWAPDSA-PIKSKMMYTSTKDSIKKKLVG----IQV 113
Query: 287 KLEIDSGSELTEEFLLEELHPKK 309
+++ +E++E+ + E
Sbjct: 114 EVQATDAAEISEDAVSERAKKDV 136
>2l72_A Tgadf, actin depolymerizing factor, putative; ADF/cofilin, actin
binding, protein binding; NMR {Toxoplasma gondii}
Length = 139
Score = 84.0 bits (207), Expect = 5e-20
Identities = 26/123 (21%), Positives = 47/123 (38%), Gaps = 16/123 (13%)
Query: 1 NEALKKFFGSIRDEK-IRVFKVSIENEALVLAGYKKVVGTWTQDFDKYVPDLIQEAQPCY 59
+E F ++ K ++ IEN +V V + D++ L +
Sbjct: 29 DENCVARFNELKIRKTVKWIVFKIENTKIV------VEKDGKGNADEFRGAL-PANDCRF 81
Query: 60 ILYRFDSKNETGGHDWLLIFWSPDDSPVRQKMLYASTKSTLKQDFGSGQIKEEIHATVPV 119
+Y +K + W PD++PV+ +M YAS+K L + G + A
Sbjct: 82 GVYDCGNK-------IQFVLWCPDNAPVKPRMTYASSKDALLKKLD-GATAVALEAHEMG 133
Query: 120 DVT 122
D+
Sbjct: 134 DLA 136
Score = 54.7 bits (131), Expect = 1e-09
Identities = 22/112 (19%), Positives = 45/112 (40%), Gaps = 14/112 (12%)
Query: 188 IKAKYNYVQFRIDLQEETINLVQSGEVTLKQLPSMIPTDSARYHLFNFRHEFEGKIIDSV 247
I+ ++ F+I+ I + + G+ + +P + R+ +++ ++ +
Sbjct: 41 IRKTVKWIVFKIE--NTKIVVEKDGKGNADEFRGALPANDCRFGVYDCGNK--------I 90
Query: 248 VFIYSMPGYSLPIKERMLYSSCKAPLLENLHHLGLTIDKKLEIDSGSELTEE 299
F+ P + P+K RM Y+S K L L L LE +L
Sbjct: 91 QFVLWCPDNA-PVKPRMTYASSKDAL---LKKLDGATAVALEAHEMGDLAPL 138
>1ak6_A Destrin; actin depolymerization factor, actin-binding protein; NMR
{Homo sapiens} SCOP: d.109.1.2 PDB: 1ak7_A 1q8g_A 1q8x_A
3j0s_M
Length = 174
Score = 84.5 bits (208), Expect = 7e-20
Identities = 31/130 (23%), Positives = 59/130 (45%), Gaps = 11/130 (8%)
Query: 12 RDEKIRVFKVSIENEALVL-----AGYKKVVGTWTQDFDKYVPDLIQEAQPCYILYRFDS 66
+ +K +F +S + + +++ V T T F +V ++ E Y LY
Sbjct: 40 KRKKAVIFCLSADKKCIIVEEGKEILVGDVGVTITDPFKHFV-GMLPEKDCRYALYDASF 98
Query: 67 K-NETGGHDWLLIFWSPDDSPVRQKMLYASTKSTLKQDFGSGQIKEEIHATVPVDVTLHG 125
+ E+ + + W+P+ +P++ KM+YAS+K +K+ F IK E A P D+
Sbjct: 99 ETKESRKEELMFFLWAPELAPLKSKMIYASSKDAIKKKFQG--IKHECQANGPEDLNRAC 156
Query: 126 Y--ELHKRAV 133
+L +
Sbjct: 157 IAEKLGGSLI 166
Score = 71.4 bits (174), Expect = 4e-15
Identities = 26/151 (17%), Positives = 56/151 (37%), Gaps = 16/151 (10%)
Query: 173 AFPLLPDAESSVHKLIKAKYNYVQFRIDLQEETI-----------NLVQSGEVTLKQLPS 221
F + + S + IK + V F + ++ I ++ + K
Sbjct: 23 IFYDMKVRKCSTPEEIKKRKKAVIFCLSADKKCIIVEEGKEILVGDVGVTITDPFKHFVG 82
Query: 222 MIPTDSARYHLFNFRHEFEGKIIDSVVFIYSMPGYSLPIKERMLYSSCKAPLLENLHHLG 281
M+P RY L++ E + + ++F P + P+K +M+Y+S K + +
Sbjct: 83 MLPEKDCRYALYDASFETKESRKEELMFFLWAPELA-PLKSKMIYASSKDAIKKKFQ--- 138
Query: 282 LTIDKKLEIDSGSELTEEFLLEELHPKKTAE 312
I + + + +L + E+L
Sbjct: 139 -GIKHECQANGPEDLNRACIAEKLGGSLIVA 168
>3q2b_A Pfadf1, cofilin/actin-depolymerizing factor homolog 1; actin
regulator, actin-binding protein; HET: TAR; 1.60A
{Plasmodium falciparum} PDB: 2xf1_A
Length = 124
Score = 80.8 bits (199), Expect = 4e-19
Identities = 15/124 (12%), Positives = 39/124 (31%), Gaps = 13/124 (10%)
Query: 1 NEALKKFFGSIRDEK-IRVFKVSIENEALVLAGYKKVVGTWTQDFDKYVPDLIQEAQPCY 59
N+ F +++ K I+N +++ + + V + + +
Sbjct: 10 NDNCVTEFNNMKIRKTCGWIIFVIQNCEIII-----HSKGASTTLTELVQSIDKNNEIQC 64
Query: 60 ILYRFDSKNETGGHDWLLIFWSPDDSPVRQKMLYASTKSTLKQDFGSGQIKEEIHATVPV 119
FD+ ++ ++ + S R +M YAS+K + + +
Sbjct: 65 AYVVFDAVSK-----IHFFMYARESSNSRDRMTYASSKQAILKKIEG--VNVLTSVIESA 117
Query: 120 DVTL 123
Sbjct: 118 QDVA 121
Score = 37.7 bits (87), Expect = 0.001
Identities = 19/93 (20%), Positives = 35/93 (37%), Gaps = 13/93 (13%)
Query: 188 IKAKYNYVQFRIDLQEETINLVQSGEVTLKQLPSMIPTDS---ARYHLFNFRHEFEGKII 244
I+ ++ F I E I + TL +L I ++ Y +F+ +
Sbjct: 22 IRKTCGWIIFVIQ-NCEIIIHSKGASTTLTELVQSIDKNNEIQCAYVVFDAVSKI----- 75
Query: 245 DSVVFIYSMPGYSLPIKERMLYSSCKAPLLENL 277
F S ++RM Y+S K +L+ +
Sbjct: 76 ---HFFMYARESS-NSRDRMTYASSKQAILKKI 104
>1tvj_A Cofilin; ADF, actin binding protein, actin depolymerizing factor,
actin-binding protein; NMR {Gallus gallus}
Length = 166
Score = 82.2 bits (202), Expect = 5e-19
Identities = 29/117 (24%), Positives = 55/117 (47%), Gaps = 9/117 (7%)
Query: 12 RDEKIRVFKVSIENEALVLAGYKKVV-----GTWTQDFDKYVPDLIQEAQPCYILYRFD- 65
+ +K +F +S + + +++ K+++ T + +V L Y LY
Sbjct: 31 KRKKAVLFCLSDDKKQIIVEEAKQILVGDIGDTVEDPYTAFVKLL-PLNDCRYALYDATY 89
Query: 66 SKNETGGHDWLLIFWSPDDSPVRQKMLYASTKSTLKQDFGSGQIKEEIHATVPVDVT 122
E+ D + IFW+P+ +P++ KM+YAS+K +K+ F IK E D+
Sbjct: 90 ETKESKKEDLVFIFWAPESAPLKSKMIYASSKDAIKKKFTG--IKHEWQVNGLDDIK 144
Score = 63.7 bits (154), Expect = 2e-12
Identities = 27/149 (18%), Positives = 61/149 (40%), Gaps = 16/149 (10%)
Query: 173 AFPLLPDAESSVHKLIKAKYNYVQFRIDLQEETI-----------NLVQSGEVTLKQLPS 221
F + +SS + IK + V F + ++ I ++ + E
Sbjct: 14 VFNDMKVRKSSTPEEIKKRKKAVLFCLSDDKKQIIVEEAKQILVGDIGDTVEDPYTAFVK 73
Query: 222 MIPTDSARYHLFNFRHEFEGKIIDSVVFIYSMPGYSLPIKERMLYSSCKAPLLENLHHLG 281
++P + RY L++ +E + + +VFI+ P + P+K +M+Y+S K + +
Sbjct: 74 LLPLNDCRYALYDATYETKESKKEDLVFIFWAPESA-PLKSKMIYASSKDAIKKKFT--- 129
Query: 282 LTIDKKLEIDSGSELTEEFLLEELHPKKT 310
I + +++ ++ + L E
Sbjct: 130 -GIKHEWQVNGLDDIKDRSTLGEKLGGNV 157
>1x67_A Drebrin-like protein; cell-free protein synthesis, actin-binding
protein, SH3P7, MABP1, T-cell lymphocyte signaling and
regulation; NMR {Homo sapiens}
Length = 146
Score = 53.9 bits (129), Expect = 4e-09
Identities = 26/123 (21%), Positives = 47/123 (38%), Gaps = 10/123 (8%)
Query: 2 EALKKFFGSIRDEK--IRVFKVSIENEALVLAGYKKVVGTWTQDFDKYVPDLIQEAQPCY 59
AL++ + + EK + E + + +V GT ++ V +L + Y
Sbjct: 17 PALQEAYVRVVTEKSPTDWALFTYEGNSNDI----RVAGTGEGGLEEMVEEL-NSGKVMY 71
Query: 60 ILYRFDSKNETGGHDWLLIFWSPDDSPVRQKMLYASTKSTLKQDFGSGQIKEEIHATVPV 119
R N +G ++LI W+ + +K AS ST+ + I+A
Sbjct: 72 AFCRVKDPN-SGLPKFVLINWTGEGVNDVRKGACASHVSTMASFLKGAHV--TINARAEE 128
Query: 120 DVT 122
DV
Sbjct: 129 DVE 131
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 53.3 bits (127), Expect = 7e-08
Identities = 61/437 (13%), Positives = 112/437 (25%), Gaps = 163/437 (37%)
Query: 1 NEALKKFFGSIRD-------EKIRVFKVSIENEALVLAGYKKVVGTWTQDFDKY-VP--- 49
E ++KF + I+ + + + + Q F KY V
Sbjct: 76 EEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQ 135
Query: 50 ------DLIQEAQPC-YIL-------------------YRFDSKNETGGHDWLLIFW--- 80
+ E +P +L Y+ K + IFW
Sbjct: 136 PYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFK------IFWLNL 189
Query: 81 ----SPDDSPVR-QKMLYASTKSTLKQDFGSGQIKEEIHATVPVDVTLHGYELHKRA--- 132
SP+ QK+LY + + S IK IH+ L + ++
Sbjct: 190 KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV 249
Query: 133 ---VKAPAPLTSQEEERAELRKFESSGQCQISIDTR------------------------ 165
V+ F C+I + TR
Sbjct: 250 LLNVQNA----------KAWNAFN--LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT 297
Query: 166 ---TQTLS------GVAFPLLPDAESSVH----KLIKAKY--------NYVQFRIDLQEE 204
+ S LP + + +I N+ D
Sbjct: 298 LTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTT 357
Query: 205 TINLVQSGEVTLKQLPSMIPTDSARYHLFNFRHEFEGKIIDSVVFIYSMPGYSLPIK--- 261
I E +L L P + +R F+ VF S +P
Sbjct: 358 II------ESSLNVLE---PAE--------YRKMFD----RLSVFPPSAH---IPTILLS 393
Query: 262 -----------ERMLYSSCKAPLLE--------NLHHLGLTIDKKLEIDSGSELTEEFLL 302
++ K L+E ++ + L + K+++++ L ++
Sbjct: 394 LIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYL--ELKVKLENEYAL-HRSIV 450
Query: 303 EELHPKKTAERPKFDKP 319
+ + KT + P
Sbjct: 451 DHYNIPKTFDSDDLIPP 467
Score = 42.1 bits (98), Expect = 2e-04
Identities = 50/320 (15%), Positives = 90/320 (28%), Gaps = 134/320 (41%)
Query: 32 GYKKVVGTWTQ----DFD-KYVPDLIQEA---QPC-YILYRFDSKNETGGHDWLLIFWSP 82
YK ++ + +FD K V D+ + + +I+ D+ + T L +FW+
Sbjct: 17 QYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGT-----LRLFWTL 71
Query: 83 DDSPVRQKMLYASTKSTLKQDFG--SGQIKEEIHATVPVDVTLHGYELHKRAVKAPAPLT 140
++M+ + L+ ++ IK E + P+ +T
Sbjct: 72 LSKQ--EEMVQKFVEEVLRINYKFLMSPIKTE--------------------QRQPSMMT 109
Query: 141 SQEEERAELRKFESSGQCQISIDTRTQTLSGVAFPLLPDAESSVHKLIKAKYNYVQFRID 200
R + I+ R + + + KYN V R+
Sbjct: 110 ---------RMY---------IEQRDRLYNDN--QVFA------------KYN-VS-RLQ 135
Query: 201 LQEETINLVQSGEVTLKQLPSMIPTDSARYHLFNFRHEFEGKIIDSVVFIYSMPGY---- 256
+L R L R V I + G
Sbjct: 136 P--------------YLKL---------RQALLELRPA-------KNVLIDGVLGSGKTW 165
Query: 257 -------SLPIKERMLY-------SSCKAP--LLENLHHLGLTIDK------------KL 288
S ++ +M + +C +P +LE L L ID KL
Sbjct: 166 VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKL 225
Query: 289 EIDSGSELTEEFLLEELHPK 308
I S L + +
Sbjct: 226 RIHSIQAELRRLLKSKPYEN 245
Score = 40.2 bits (93), Expect = 9e-04
Identities = 67/396 (16%), Positives = 115/396 (29%), Gaps = 127/396 (32%)
Query: 10 SIRDEKIRVFKVSIENEAL-VLAG--YKKVVGTWTQDFD-----------KYVPDLIQEA 55
SI+ E R+ K L VL K F+ K V D + A
Sbjct: 229 SIQAELRRLLKSKPYENCLLVLLNVQNAKAW----NAFNLSCKILLTTRFKQVTDFLSAA 284
Query: 56 QPCYILYRFDS----KNETGGHDWLLIFW---SPDD--------SPVRQKMLYASTK--- 97
+I S +E LL+ + P D +P R ++ S +
Sbjct: 285 TTTHISLDHHSMTLTPDEVKS---LLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGL 341
Query: 98 STLK--QDFGSGQIKEEIHATVPVDVTLHGYELHKR---------AVKAPAPL------- 139
+T + ++ I +++ V L E K + P L
Sbjct: 342 ATWDNWKHVNCDKLTTIIESSLNV---LEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFD 398
Query: 140 TSQEEERAELRKFESSGQCQISIDTRTQTLSGVAFPLL--PDAESSVHKLIKAKYNYVQF 197
+ + + K + T ++ + L + E ++H+ I YN +
Sbjct: 399 VIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPK- 457
Query: 198 RIDLQEETINLVQSGEVTLKQLPSMIPTDS-----ARYHLFN---------FRHEF---- 239
D + D +HL N FR F
Sbjct: 458 TFDSDDLIPP----------------YLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFR 501
Query: 240 --EGKIIDSVVFIYSMPGYSL-----------------PIKERMLYSSCKAPLLENLHHL 280
E KI ++ G L P ER++ + +L+ L +
Sbjct: 502 FLEQKIRHDST-AWNASGSILNTLQQLKFYKPYICDNDPKYERLVNA-----ILDFLPKI 555
Query: 281 G--LTIDKKLEIDSGSELTE-EFLLEELHPKKTAER 313
L K ++ + + E E + EE H K +R
Sbjct: 556 EENLICSKYTDLLRIALMAEDEAIFEEAH--KQVQR 589
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 51.6 bits (123), Expect = 3e-07
Identities = 54/272 (19%), Positives = 85/272 (31%), Gaps = 108/272 (39%)
Query: 27 ALVLAGYKKVVGTWTQDFDKYVPDLI----------QEAQPCYIL---YRFDSKNETGGH 73
A+ +A +W + F V I EA P L DS G
Sbjct: 280 AVAIA----ETDSW-ESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEG- 333
Query: 74 DWLLIFWSPDDSPVRQKMLYASTKSTLKQDFGSGQIKEEIHAT---VPVD---------- 120
P SP ML S + L Q+ Q+++ ++ T +P
Sbjct: 334 -------VP--SP----ML--SISN-LTQE----QVQDYVNKTNSHLPAGKQVEISLVNG 373
Query: 121 -----VT-----LHGYELHKRAVKAPAPLTSQEEERAEL--RKFESSGQCQISIDTRTQT 168
V+ L+G L R KAP+ L ++ R RK + R
Sbjct: 374 AKNLVVSGPPQSLYGLNLTLRKAKAPSGL---DQSRIPFSERK--------LKFSNRFLP 422
Query: 169 LSGVAF--PLLPDAESSVHKLIKAKYNYVQFRIDLQEETINLVQSGEVTLKQLPSMIPTD 226
++ F LL A ++K DL + ++ ++ IP
Sbjct: 423 VA-SPFHSHLLVPASDLINK-------------DLVKNNVSFNAK---DIQ-----IPV- 459
Query: 227 SARYHLF---NFRHEFEGKIIDSVV-FIYSMP 254
Y F + R G I + +V I +P
Sbjct: 460 ---YDTFDGSDLR-VLSGSISERIVDCIIRLP 487
Score = 39.3 bits (91), Expect = 0.002
Identities = 34/201 (16%), Positives = 65/201 (32%), Gaps = 55/201 (27%)
Query: 123 LHGYELHKRAVKAPAPLTSQEEERAELRK--FESSGQCQISIDTRTQTLSGVAFPLLPDA 180
L G ++H A K + + EL K + + D ++ + L
Sbjct: 96 LEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNS------ALFRAV 149
Query: 181 ESSVHKLIKAKYNYVQF----RID-----LQE--ET-----INLVQSGEVTLKQLPSMIP 224
+L F D L++ +T +L++ TL +L
Sbjct: 150 GEGNAQL------VAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIR-TT 202
Query: 225 TDSARYHLFNFRHEFEGKIIDSVVFIYSMPGYSLPIKERMLYS--SCKAPL--LENLHH- 279
D+ + + ++ + ++ P + P K+ +L SC PL + L H
Sbjct: 203 LDAEKVF---------TQGLNILEWL-ENPS-NTPDKDYLLSIPISC--PLIGVIQLAHY 249
Query: 280 ------LGLTIDKKLEIDSGS 294
LG T + G+
Sbjct: 250 VVTAKLLGFTPGELRSYLKGA 270
Score = 31.2 bits (70), Expect = 0.54
Identities = 45/280 (16%), Positives = 76/280 (27%), Gaps = 111/280 (39%)
Query: 7 FFGSIRDEKIRVFKVSIEN-EALVLAGY-------KKVVGTWTQDFDKYV---P----DL 51
FG + ++IR EN A++ +K+ + Y
Sbjct: 1675 HFGGEKGKRIR------ENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSA 1728
Query: 52 IQEAQPC-----YILYRFDSKNETG--------GHDWLLIFWSPDDSPVRQKML--YA-- 94
Q QP + D K++ GH S L YA
Sbjct: 1729 TQFTQPALTLMEKAAFE-DLKSKGLIPADATFAGH-----------S------LGEYAAL 1770
Query: 95 -------STKSTLKQDFGSGQIKEEIHATVPVDVTLHGYELHKRAVKAP---APLTSQEE 144
S +S ++ F G + VP D G + P A SQE
Sbjct: 1771 ASLADVMSIESLVEVVFYRGMT---MQVAVPRDE--LGRSNYGMIAINPGRVAASFSQEA 1825
Query: 145 ERAELRKF--ESSGQCQISIDTRTQTLSGVAFPLLPDAESSVHKLIKAKYN-----YV-- 195
+ + + + +I YN YV
Sbjct: 1826 LQYVVERVGKRTGWLVEI-----------------------------VNYNVENQQYVAA 1856
Query: 196 -QFR-IDLQEETINLVQSGEVTLKQLPSMIPTDSARYHLF 233
R +D +N ++ ++ + +L + + HLF
Sbjct: 1857 GDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEVEGHLF 1896
>1hqz_1 ABP1P, actin-binding protein; cofilin homology domain, NEW YORK SGX
researc for structural genomics, NYSGXRC, structural
genomics, PSI; 2.10A {Saccharomyces cerevisiae} SCOP:
d.109.1.2
Length = 141
Score = 47.6 bits (113), Expect = 5e-07
Identities = 18/118 (15%), Positives = 42/118 (35%), Gaps = 13/118 (11%)
Query: 18 VFKVSIENEALVLAGYKKVVGTWTQDFDKYVPDLIQEAQPCYILYRFDSKNETGGHDWLL 77
+ + + E + F ++ E + Y L R + ++
Sbjct: 34 IISPNAKKEYEPEST--------GSSFHDFLQLF-DETKVQYGLARVSPPG-SDVEKIII 83
Query: 78 IFWSPDDSPVRQKMLYASTKSTLKQDFGSGQIKEEIHATVPVDVTLHGYELHKRAVKA 135
I W PD +P++ + +A+ + + + G ++ A D+ + EL + A
Sbjct: 84 IGWCPDSAPLKTRASFAANFAAVANNLFKG-YHVQVTARDEDDLDEN--ELLMKISNA 138
>1t3y_A Coactosin-like protein; beta sheet, protein binding; 1.15A {Homo
sapiens} SCOP: d.109.1.2 PDB: 1t2l_A 1t3x_A 1vfq_A
1tmw_A 1wnj_A 1udm_A 1wm4_A
Length = 141
Score = 47.3 bits (112), Expect = 6e-07
Identities = 12/92 (13%), Positives = 32/92 (34%), Gaps = 4/92 (4%)
Query: 32 GYKKVVGTWTQDFDKYVPDLIQEAQPCYILYRFDSKNETGGHD-WLLIFWSPDDSPVRQK 90
G V G ++ ++ + + RF + + + LI W ++ Q+
Sbjct: 32 GSTIVPGEQGAEYQHFIQQC-TDDVRLFAFVRFTTGDAMSKRSKFALITWIGENVSGLQR 90
Query: 91 MLYASTKSTLKQDFGSGQIKEEIHATVPVDVT 122
+ K+ +K+ + E + ++
Sbjct: 91 AKTGTDKTLVKEVVQNFAK--EFVISDRKELE 120
>3isp_A HTH-type transcriptional regulator RV1985C/MT2039; ROD shaped
structure, DNA binding domain, regulatory domain,
DNA-binding; 2.70A {Mycobacterium tuberculosis}
Length = 303
Score = 31.9 bits (73), Expect = 0.28
Identities = 22/127 (17%), Positives = 45/127 (35%), Gaps = 26/127 (20%)
Query: 96 TKSTLKQDFGSGQIK--EE------IHATVPVDVTLHGYELHKRAVKAPAPLTSQEEERA 147
T S + S +IK E+ + P T G L + A + + E A
Sbjct: 33 TPSAV-----SQRIKSLEQQVGQVLVVREKPCRATTAGIPLLRLAAQT---ALLESEALA 84
Query: 148 ELRKFESSGQCQISIDTRTQTLSGVAFPLLPDAESSVHKLIKAKYNYVQFRIDLQEETIN 207
E+ S + +I+I +++ + + + + RI+ Q+ +
Sbjct: 85 EMGGNASLKRTRITIAVNADSMATWFSAVFDG----LGDV------LLDVRIEDQDHSAR 134
Query: 208 LVQSGEV 214
L++ G
Sbjct: 135 LLREGVA 141
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.9 bits (66), Expect = 0.71
Identities = 10/46 (21%), Positives = 17/46 (36%), Gaps = 19/46 (41%)
Query: 145 ERAELRKFESSGQCQISIDTRTQTLSGVAFPLLPDAESSVHKLIKA 190
E+ L+K ++S L A D+ ++ IKA
Sbjct: 18 EKQALKKLQAS-------------LKLYA----DDSAPAL--AIKA 44
>1w8o_A Bacterial sialidase; 3D-structure, glycosidase, hydrolase, beta-
propeller; HET: LBT CIT; 1.70A {Micromonospora
viridifaciens} SCOP: b.1.18.2 b.18.1.1 b.68.1.1 PDB:
1w8n_A* 1eut_A 1euu_A* 1wcq_A* 2bzd_A* 2ber_A* 1eur_A
1eus_A*
Length = 601
Score = 28.2 bits (61), Expect = 4.6
Identities = 7/51 (13%), Positives = 13/51 (25%)
Query: 41 TQDFDKYVPDLIQEAQPCYILYRFDSKNETGGHDWLLIFWSPDDSPVRQKM 91
+ DL I+ F +L+F + R +
Sbjct: 249 SYGPVTIDRDLPDPTNNASIIRAFPDAPAGSARAKVLLFSNAASQTSRSQG 299
>1nln_A Adenain; thiol hydrolase, viral proteinase, peptide cofactor;
1.60A {Human adenovirus 2} SCOP: d.3.1.7 PDB: 1avp_A
Length = 204
Score = 27.2 bits (60), Expect = 6.1
Identities = 10/39 (25%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 44 FDKYVPDLIQEAQPCYILYRFDSKNETGGHDWLLIFWSP 82
+DK P + + + + ETGG W+ W+P
Sbjct: 25 YDKRFPGFVSPHKLACAIVNTAGR-ETGGVHWMAFAWNP 62
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.134 0.390
Gapped
Lambda K H
0.267 0.0550 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,207,747
Number of extensions: 308568
Number of successful extensions: 605
Number of sequences better than 10.0: 1
Number of HSP's gapped: 555
Number of HSP's successfully gapped: 50
Length of query: 339
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 245
Effective length of database: 4,077,219
Effective search space: 998918655
Effective search space used: 998918655
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.5 bits)