RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14919
(339 letters)
>d1m4ja_ d.109.1.2 (A:) Adf-H domain of twinfilin isoform-1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 133
Score = 125 bits (315), Expect = 4e-36
Identities = 63/129 (48%), Positives = 92/129 (71%), Gaps = 1/129 (0%)
Query: 1 NEALKKFFGSIRDEKIRVFKVSIENEALVLAGYKKVVGTWTQDFDKYVPDLIQEAQPCYI 60
+E +K+ F R+ K R+ K+SIENE LV+ +W QD+D +V L+++ QPCY+
Sbjct: 4 SEDVKEIFARARNGKYRLLKISIENEQLVVGSCSPPSDSWEQDYDSFVLPLLEDKQPCYV 63
Query: 61 LYRFDSKNETGGHDWLLIFWSPDDSPVRQKMLYASTKSTLKQDFGSGQIKEEIHATVPVD 120
L+R DS+N G++W+ I WSPD S VRQKMLYA+T++TLK++FG G IK+E+ TV D
Sbjct: 64 LFRLDSQN-AQGYEWIFIAWSPDHSHVRQKMLYAATRATLKKEFGGGHIKDEVFGTVKED 122
Query: 121 VTLHGYELH 129
V+LHGY+ +
Sbjct: 123 VSLHGYKKY 131
Score = 62.2 bits (151), Expect = 1e-12
Identities = 19/120 (15%), Positives = 46/120 (38%), Gaps = 12/120 (10%)
Query: 193 NYVQFRIDLQEETINLVQSGEVT-------LKQLPSMIPTDSARYHLFNFRHEFEGKIID 245
Y +I ++ E + + + + ++ Y L FR + +
Sbjct: 18 KYRLLKISIENEQLVVGSCSPPSDSWEQDYDSFVLPLLEDKQPCYVL--FRLDSQNAQGY 75
Query: 246 SVVFIYSMPGYSLPIKERMLYSSCKAPLLENLHHLGLTIDKKLEIDSGSELTEEFLLEEL 305
+FI P +S ++++MLY++ +A L + G I ++ +++ + L
Sbjct: 76 EWIFIAWSPDHS-HVRQKMLYAATRATLKKEFG--GGHIKDEVFGTVKEDVSLHGYKKYL 132
>d1vkka_ d.109.1.2 (A:) Glia maturation factor gamma, GMF-gamma
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 137
Score = 89.9 bits (223), Expect = 1e-22
Identities = 23/117 (19%), Positives = 58/117 (49%), Gaps = 8/117 (6%)
Query: 191 KYNYVQFRIDLQEETINLVQSGE-VTLKQLPSMIPTDSARYHLFNFRHEF-EGKIIDSVV 248
+ ++D + + L + ++ ++L +P R+ ++++++ +G++ +
Sbjct: 23 NNAAIIMKVDKDRQMVVLEDELQNISPEELKLELPERQPRFVVYSYKYVHDDGRVSYPLC 82
Query: 249 FIYSMPGYSLPIKERMLYSSCKAPLLENLHHLGLTIDKKLEIDSGSELTEEFLLEEL 305
FI+S P +++M+Y+ K L++ + K EI + +LTE +L E+L
Sbjct: 83 FIFSSP-VGCKPEQQMMYAGSKNRLVQTAE-----LTKVFEIRTTDDLTETWLKEKL 133
Score = 85.2 bits (211), Expect = 6e-21
Identities = 27/124 (21%), Positives = 52/124 (41%), Gaps = 12/124 (9%)
Query: 2 EALKKF-FGSIRDEKIRVFKVSIENEALVLAGYKKVVGTWTQDFDKYVPDLIQEAQPCYI 60
E L+KF F + + KV + + +VL ++ ++ + E QP ++
Sbjct: 11 ETLRKFRFRKETNNAAIIMKVDKDRQMVVLE--DELQNISPEEL----KLELPERQPRFV 64
Query: 61 LYRFDSKNETGG--HDWLLIFWSPDDSPVRQKMLYASTKSTLKQDFGSGQIKEEIHATVP 118
+Y + ++ G + IF SP Q+M+YA +K+ L Q + +
Sbjct: 65 VYSYKYVHDDGRVSYPLCFIFSSPVGCKPEQQMMYAGSKNRLVQTAE---LTKVFEIRTT 121
Query: 119 VDVT 122
D+T
Sbjct: 122 DDLT 125
>d1f7sa_ d.109.1.2 (A:) Cofilin (actin depolymerizing factor, ADF)
{Plant (Arabidopsis thaliana), ADF1 [TaxId: 3702]}
Length = 124
Score = 79.2 bits (195), Expect = 6e-19
Identities = 30/125 (24%), Positives = 58/125 (46%), Gaps = 12/125 (9%)
Query: 1 NEALKKFFGSIRDEKI---RVFKVSIENEALVLAGYKKVVGTWTQDFDKYVPDLIQEAQP 57
++ K F ++ ++ V+K+ + + +V+ + + T+ ++F +P +
Sbjct: 7 HDDCKLRFLELKAKRTHRFIVYKIEEKQKQVVVEKVGQPIQTY-EEFAACLP----ADEC 61
Query: 58 CYILYRFDSKNETGGH--DWLLIFWSPDDSPVRQKMLYASTKSTLKQDFGSGQIKEEIHA 115
Y +Y FD I W PD + VR KM+YAS+K K++ I+ E+ A
Sbjct: 62 RYAIYDFDFVTAENCQKSKIFFIAWCPDIAKVRSKMIYASSKDRFKREL--DGIQVELQA 119
Query: 116 TVPVD 120
T P +
Sbjct: 120 TDPTE 124
Score = 70.7 bits (173), Expect = 8e-16
Identities = 19/110 (17%), Positives = 49/110 (44%), Gaps = 6/110 (5%)
Query: 188 IKAKYNYVQFRIDLQEETINLVQSGEV--TLKQLPSMIPTDSARYHLFNFRHEFEGKIID 245
K + ++ ++I+ +++ + + + G+ T ++ + +P D RY +++F
Sbjct: 19 AKRTHRFIVYKIEEKQKQVVVEKVGQPIQTYEEFAACLPADECRYAIYDFDFVTAENCQK 78
Query: 246 SVVFIYSMPGYSLPIKERMLYSSCKAPLLENLHHLGLTIDKKLEIDSGSE 295
S +F + ++ +M+Y+S K L I +L+ +E
Sbjct: 79 SKIFFIAWCPDIAKVRSKMIYASSKDRFKRELDG----IQVELQATDPTE 124
>d1cnua_ d.109.1.2 (A:) Cofilin (actin depolymerizing factor, ADF)
{Acanthamoeba castellanii, actophorin [TaxId: 5755]}
Length = 134
Score = 78.4 bits (193), Expect = 2e-18
Identities = 27/120 (22%), Positives = 57/120 (47%), Gaps = 7/120 (5%)
Query: 188 IKAKYNYVQFRIDLQEETINLVQSGEV--TLKQLPSMIPTDSARYHLFNFRHEFEGKIID 245
+ ++ YV F+++ + + G T + S +P RY +F++ + +G +
Sbjct: 17 LGHQHRYVTFKMNASNTEVVVEHVGGPNATYEDFKSQLPERDCRYAIFDYEFQVDGGQRN 76
Query: 246 SVVFIYSMPGYSLPIKERMLYSSCKAPLLENLHHLGLTIDKKLEIDSGSELTEEFLLEEL 305
+ FI P S PIK +M+Y+S K + + L I +++ +E++E+ + E
Sbjct: 77 KITFILWAPD-SAPIKSKMMYTSTKDSIKKKLVG----IQVEVQATDAAEISEDAVSERA 131
Score = 78.0 bits (192), Expect = 2e-18
Identities = 27/127 (21%), Positives = 60/127 (47%), Gaps = 11/127 (8%)
Query: 1 NEALKKFFGSIRDEKIR---VFKVSIENEALVLAGYKKVVGTWTQDFDKYVPDLIQEAQP 57
++ + F ++ FK++ N +V+ + VG ++ + L E
Sbjct: 5 SDDCVQKFNELKLGHQHRYVTFKMNASNTEVVV----EHVGGPNATYEDFKSQL-PERDC 59
Query: 58 CYILYRFDSKNETGG-HDWLLIFWSPDDSPVRQKMLYASTKSTLKQDFGSGQIKEEIHAT 116
Y ++ ++ + + G + I W+PD +P++ KM+Y STK ++K+ I+ E+ AT
Sbjct: 60 RYAIFDYEFQVDGGQRNKITFILWAPDSAPIKSKMMYTSTKDSIKKKLVG--IQVEVQAT 117
Query: 117 VPVDVTL 123
+++
Sbjct: 118 DAAEISE 124
>d1q8ga_ d.109.1.2 (A:) Cofilin (actin depolymerizing factor, ADF)
{Human (Homo sapiens), non-muscle isoform [TaxId: 9606]}
Length = 166
Score = 79.0 bits (194), Expect = 2e-18
Identities = 29/114 (25%), Positives = 55/114 (48%), Gaps = 9/114 (7%)
Query: 15 KIRVFKVSIENEALVLAGYKKVV-----GTWTQDFDKYVPDLIQEAQPCYILYRFDSKNE 69
K +F +S + + ++L K+++ T + +V L + Y LY + +
Sbjct: 34 KAVLFCLSEDKKNIILEEGKEILVGDVGQTVDDPYATFVKML-PDKDCRYALYDATYETK 92
Query: 70 TGG-HDWLLIFWSPDDSPVRQKMLYASTKSTLKQDFGSGQIKEEIHATVPVDVT 122
D + IFW+P+ +P++ KM+YAS+K +K+ IK E+ A +V
Sbjct: 93 ESKKEDLVFIFWAPESAPLKSKMIYASSKDAIKKKLTG--IKHELQANCYEEVK 144
Score = 65.9 bits (160), Expect = 1e-13
Identities = 31/143 (21%), Positives = 61/143 (42%), Gaps = 16/143 (11%)
Query: 173 AFPLLPDAESSVHKLIKAKYNYVQFRIDLQEETINLVQSGEVT-----------LKQLPS 221
F + +SS + +K + V F + ++ I L + E+
Sbjct: 14 VFNDMKVRKSSTPEEVKKRKKAVLFCLSEDKKNIILEEGKEILVGDVGQTVDDPYATFVK 73
Query: 222 MIPTDSARYHLFNFRHEFEGKIIDSVVFIYSMPGYSLPIKERMLYSSCKAPLLENLHHLG 281
M+P RY L++ +E + + +VFI+ P + P+K +M+Y+S K + + L
Sbjct: 74 MLPDKDCRYALYDATYETKESKKEDLVFIFWAPESA-PLKSKMIYASSKDAIKKKLT--- 129
Query: 282 LTIDKKLEIDSGSELTEEFLLEE 304
I +L+ + E+ + L E
Sbjct: 130 -GIKHELQANCYEEVKDRCTLAE 151
>d1ak7a_ d.109.1.2 (A:) Destrin {Human and pig (Homo sapiens) and
(Sus scrofa) [TaxId: 9606]}
Length = 174
Score = 78.9 bits (194), Expect = 3e-18
Identities = 28/118 (23%), Positives = 53/118 (44%), Gaps = 9/118 (7%)
Query: 12 RDEKIRVFKVSIENEALVL-----AGYKKVVGTWTQDFDKYVPDLIQEAQPCYILYRFDS 66
+ +K +F +S + + +++ V T T F ++ E Y LY
Sbjct: 40 KRKKAVIFCLSADKKCIIVEEGKEILVGDVGVTITDPFKH-FVGMLPEKDCRYALYDASF 98
Query: 67 KNETGG-HDWLLIFWSPDDSPVRQKMLYASTKSTLKQDFGSGQIKEEIHATVPVDVTL 123
+ + + + W+P+ +P++ KM+YAS+K +K+ F IK E A P D+
Sbjct: 99 ETKESRKEELMFFLWAPELAPLKSKMIYASSKDAIKKKFQG--IKHECQANGPEDLNR 154
Score = 78.9 bits (194), Expect = 3e-18
Identities = 27/150 (18%), Positives = 57/150 (38%), Gaps = 16/150 (10%)
Query: 173 AFPLLPDAESSVHKLIKAKYNYVQFRIDLQEETINLVQSGEVT-----------LKQLPS 221
F + + S + IK + V F + ++ I + + E+ K
Sbjct: 23 IFYDMKVRKCSTPEEIKKRKKAVIFCLSADKKCIIVEEGKEILVGDVGVTITDPFKHFVG 82
Query: 222 MIPTDSARYHLFNFRHEFEGKIIDSVVFIYSMPGYSLPIKERMLYSSCKAPLLENLHHLG 281
M+P RY L++ E + + ++F P + P+K +M+Y+S K + +
Sbjct: 83 MLPEKDCRYALYDASFETKESRKEELMFFLWAPELA-PLKSKMIYASSKDAIKKKFQ--- 138
Query: 282 LTIDKKLEIDSGSELTEEFLLEELHPKKTA 311
I + + + +L + E+L
Sbjct: 139 -GIKHECQANGPEDLNRACIAEKLGGSLIV 167
>d1cfya_ d.109.1.2 (A:) Cofilin (actin depolymerizing factor, ADF)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 133
Score = 73.8 bits (181), Expect = 9e-17
Identities = 21/121 (17%), Positives = 52/121 (42%), Gaps = 8/121 (6%)
Query: 188 IKAKYNYVQFRIDLQEETINLVQSGE-VTLKQLPSMIPTDSARYHLFNF--RHEFEGKII 244
+ KY ++ F ++ + I + ++ + +P + Y +++F
Sbjct: 16 LGKKYKFILFGLNDAKTEIVVKETSTDPSYDAFLEKLPENDCLYAIYDFEYEINGNEGKR 75
Query: 245 DSVVFIYSMPGYSLPIKERMLYSSCKAPLLENLHHLGLTIDKKLEIDSGSELTEEFLLEE 304
+VF P + P++ +M+Y+S K L L+ + ++ SE++ + +LE
Sbjct: 76 SKIVFFTWSPDTA-PVRSKMVYASSKDALRRALNG----VSTDVQGTDFSEVSYDSVLER 130
Query: 305 L 305
+
Sbjct: 131 V 131
Score = 71.1 bits (174), Expect = 8e-16
Identities = 26/129 (20%), Positives = 54/129 (41%), Gaps = 14/129 (10%)
Query: 1 NEALKKFFGSIR-DEKIR--VFKVSIENEALVLAGYKKVVGTWTQDFDKYVPDLIQEAQP 57
+ F ++ +K + +F ++ +V+ + +D ++ L E
Sbjct: 4 ADESLTAFNDLKLGKKYKFILFGLNDAKTEIVV-----KETSTDPSYDAFLEKL-PENDC 57
Query: 58 CYILYRFDSKNETGG---HDWLLIFWSPDDSPVRQKMLYASTKSTLKQDFGSGQIKEEIH 114
Y +Y F+ + + WSPD +PVR KM+YAS+K L++ + ++
Sbjct: 58 LYAIYDFEYEINGNEGKRSKIVFFTWSPDTAPVRSKMVYASSKDALRRALNG--VSTDVQ 115
Query: 115 ATVPVDVTL 123
T +V+
Sbjct: 116 GTDFSEVSY 124
>d1t3ya1 d.109.1.2 (A:2-131) Coactosin-like protein Cotl1 (Clp)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 130
Score = 69.5 bits (170), Expect = 2e-15
Identities = 17/117 (14%), Positives = 33/117 (28%), Gaps = 8/117 (6%)
Query: 189 KAKYNYVQFRIDLQEETINLVQSGEVTLKQLPSMIPTDSARYHLFNFRHEFEGKIIDSVV 248
+ +V F+ D + + + D + F
Sbjct: 20 GSAVIWVTFKYD---GSTIVPGEQGAEYQHFIQQCTDDVRLFAFVRFTTGDAMSKRSKFA 76
Query: 249 FIYSMPGYSLPIKERMLYSSCKAPLLENLHHLGLTIDKKLEIDSGSELTEEFLLEEL 305
I + +R + K + E + + K+ I EL E+F+ EL
Sbjct: 77 LITWIGENV-SGLQRAKTGTDKTLVKEVVQN----FAKEFVISDRKELEEDFIKSEL 128
Score = 64.1 bits (156), Expect = 2e-13
Identities = 15/124 (12%), Positives = 41/124 (33%), Gaps = 13/124 (10%)
Query: 2 EALKKFFGSIRDEK--IRVFKVSIENEALVLAGYKKVVGTWTQDFDKYVPDLIQEAQPCY 59
EA + + +RD+ + + V G ++ ++ + +
Sbjct: 7 EACRAAYNLVRDDGSAVIWVTFKYDGS-------TIVPGEQGAEYQHFIQQC-TDDVRLF 58
Query: 60 ILYRFDSKNETGG-HDWLLIFWSPDDSPVRQKMLYASTKSTLKQDFGSGQIKEEIHATVP 118
RF + + + LI W ++ Q+ + K+ +K+ +E +
Sbjct: 59 AFVRFTTGDAMSKRSKFALITWIGENVSGLQRAKTGTDKTLVKEVV--QNFAKEFVISDR 116
Query: 119 VDVT 122
++
Sbjct: 117 KELE 120
>d1hqz1_ d.109.1.2 (1:) Cofilin-like domain of actin-binding protein
abp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 139
Score = 63.7 bits (155), Expect = 3e-13
Identities = 15/105 (14%), Positives = 37/105 (35%), Gaps = 11/105 (10%)
Query: 18 VFKVSIENEALVLAGYKKVVGTWTQDFDKYVPDLIQEAQPCYILYRFDSKNETGGHDWLL 77
+ + + E + F ++ E + Y L R + ++
Sbjct: 32 IISPNAKKEYEPEST--------GSSFHDFLQLF-DETKVQYGLARVSPPG-SDVEKIII 81
Query: 78 IFWSPDDSPVRQKMLYASTKSTLKQDFGSGQIKEEIHATVPVDVT 122
I W PD +P++ + +A+ + + + G ++ A D+
Sbjct: 82 IGWCPDSAPLKTRASFAANFAAVANNLFKG-YHVQVTARDEDDLD 125
Score = 55.2 bits (133), Expect = 4e-10
Identities = 19/133 (14%), Positives = 47/133 (35%), Gaps = 11/133 (8%)
Query: 178 PDAESSVHKLIKAK---YNYVQFRIDLQEETINLVQSGEVTLKQLPSMIPTDSARYHLFN 234
+ ++ K+++ ++ + + +S + + +Y L
Sbjct: 11 REIDAEYLKIVRGSDPDTTWLIISPN--AKKEYEPESTGSSFHDFLQLFDETKVQYGLA- 67
Query: 235 FRHEFEGKIIDSVVFIYSMPGYSLPIKERMLYSSCKAPLLENLHHLGLTIDKKLEIDSGS 294
R G ++ ++ I P S P+K R +++ A + N L ++
Sbjct: 68 -RVSPPGSDVEKIIIIGWCPD-SAPLKTRASFAANFAAVANN---LFKGYHVQVTARDED 122
Query: 295 ELTEEFLLEELHP 307
+L E LL ++
Sbjct: 123 DLDENELLMKISN 135
>d1qsra_ d.108.1.1 (A:) Catalytic domain of GCN5 histone
acetyltransferase {Tetrahymena thermophila [TaxId:
5911]}
Length = 162
Score = 29.3 bits (65), Expect = 0.46
Identities = 13/65 (20%), Positives = 23/65 (35%), Gaps = 11/65 (16%)
Query: 195 VQFRI----DLQEETINLVQSGEVTLKQLPSMIPTDSARYHLFNFRHEF------EGKII 244
+ F I L+ + +QLP M + +F+ HE + K+I
Sbjct: 1 LDFDILTNDGTHRNMKLLIDLKNIFSRQLPKMPKEYIVKL-VFDRHHESMVILKNKQKVI 59
Query: 245 DSVVF 249
+ F
Sbjct: 60 GGICF 64
>d1nlna_ d.3.1.7 (A:) Human adenovirus 2 proteinase, adenain
{Mastadenovirus H2 [TaxId: 10515]}
Length = 203
Score = 27.4 bits (61), Expect = 1.8
Identities = 10/39 (25%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 44 FDKYVPDLIQEAQPCYILYRFDSKNETGGHDWLLIFWSP 82
+DK P + + + + ETGG W+ W+P
Sbjct: 24 YDKRFPGFVSPHKLACAIVNTAGR-ETGGVHWMAFAWNP 61
>d1d3ya_ e.12.1.1 (A:) DNA topoisomerase IV, alpha subunit {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 298
Score = 25.7 bits (56), Expect = 8.6
Identities = 5/38 (13%), Positives = 16/38 (42%)
Query: 279 HLGLTIDKKLEIDSGSELTEEFLLEELHPKKTAERPKF 316
L + + E S ++ ++++ P+K + +
Sbjct: 259 KQMLDMGVRAEQQSLAKYGLKYVVNTYLPEKIKDESTW 296
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.134 0.390
Gapped
Lambda K H
0.267 0.0650 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,280,316
Number of extensions: 60146
Number of successful extensions: 152
Number of sequences better than 10.0: 1
Number of HSP's gapped: 126
Number of HSP's successfully gapped: 24
Length of query: 339
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 253
Effective length of database: 1,226,816
Effective search space: 310384448
Effective search space used: 310384448
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.4 bits)