RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14920
(586 letters)
>gnl|CDD|163658 cd07415, MPP_PP2A_PP4_PP6, PP2A, PP4, and PP6 phosphoprotein
phosphatases, metallophosphatase domain. PP2A-like
family of phosphoprotein phosphatases (PPP's) including
PP4 and PP6. PP2A (Protein phosphatase 2A) is a
critical regulator of many cellular activities. PP2A
comprises about 1% of total cellular proteins. PP2A,
together with protein phosphatase 1 (PP1), accounts for
more than 90% of all serine/threonine phosphatase
activities in most cells and tissues. The PP2A subunit
in addition to having a catalytic domain homologous to
PP1, has a unique C-terminal tail, containing a motif
that is conserved in the catalytic subunits of all
PP2A-like phosphatases including PP4 and PP6, and has an
important role in PP2A regulation. The PP2A-like family
of phosphatases all share a similar heterotrimeric
architecture, that includes: a 65kDa scaffolding subunit
(A), a 36kDa catalytic subunit (C), and one of 18
regulatory subunits (B). The PPP (phosphoprotein
phosphatase) family, to which PP2A belongs, is one of
two known protein phosphatase families specific for
serine and threonine. The PPP family also includes:
PP1, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC,
PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic
domain is defined by three conserved motifs (-GDXHG-,
-GDXVDRG- and -GNHE-). The PPP enzyme family is ancient
with members found in all eukaryotes, and in most
bacterial and archeal genomes. Dephosphorylation of
phosphoserines and phosphothreonines on target proteins
plays a central role in the regulation of many cellular
processes. PPPs belong to the metallophosphatase (MPP)
superfamily. MPPs are functionally diverse, but all
share a conserved domain with an active site consisting
of two metal ions (usually manganese, iron, or zinc)
coordinated with octahedral geometry by a cage of
histidine, aspartate, and asparagine residues. The MPP
superfamily includes: Mre11/SbcD-like exonucleases,
Dbr1-like RNA lariat debranching enzymes, YfcE-like
phosphodiesterases, purple acid phosphatases (PAPs),
YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 285
Score = 562 bits (1451), Expect = 0.0
Identities = 200/258 (77%), Positives = 223/258 (86%)
Query: 327 ITEILAKESNVQEVKCPVTVCGDVHGQFHDLMELFKIGGKSPDTNYLFMGDYVDRGYYSV 386
EIL KESNVQ V+ PVTVCGD+HGQF+DL+ELF++GG PDTNYLF+GDYVDRGYYSV
Sbjct: 27 AKEILVKESNVQRVRSPVTVCGDIHGQFYDLLELFRVGGDPPDTNYLFLGDYVDRGYYSV 86
Query: 387 ETVTLLVALKVRYRERITILRGNHESRQITQVYGFYDECLRKYGNANVWKFFTDLFDYLP 446
ET LL+ALKVRY +RIT+LRGNHESRQITQVYGFYDECLRKYGNANVWK+ TDLFDYLP
Sbjct: 87 ETFLLLLALKVRYPDRITLLRGNHESRQITQVYGFYDECLRKYGNANVWKYCTDLFDYLP 146
Query: 447 LTALVDGQIFCLHGGLSPSIDTLDHIRALDRLQEVPHEGPMCDLLWSDPDDRGGWGISPR 506
L AL+D QIFC+HGGLSPSIDTLD IRA+DR QEVPHEGPMCDLLWSDPDD GWGISPR
Sbjct: 147 LAALIDNQIFCVHGGLSPSIDTLDQIRAIDRFQEVPHEGPMCDLLWSDPDDIEGWGISPR 206
Query: 507 GAGYTFGQDISETFNHSNGLTLVSRAHQLVMEGYNWCHDRNVVTIFSAPNYCYRCGNQAA 566
GAGY FGQD+ E FNH+NGLTL+ RAHQLVMEGY W D +VT++SAPNYCYRCGN A+
Sbjct: 207 GAGYLFGQDVVEEFNHNNGLTLICRAHQLVMEGYQWMFDDKLVTVWSAPNYCYRCGNVAS 266
Query: 567 IMELDDGLKYSLPLGNPC 584
IMELD+ LK S +
Sbjct: 267 IMELDEHLKRSFKVFEAA 284
Score = 49.1 bits (118), Expect = 2e-06
Identities = 18/35 (51%), Positives = 26/35 (74%), Gaps = 4/35 (11%)
Query: 9 ELDQWIEQLNECKQLTESQVKTLCDKEIRKAMEVF 43
+LD+WIEQL +C+ L ES+VK+LC+ KA E+
Sbjct: 1 DLDKWIEQLKKCELLPESEVKSLCE----KAKEIL 31
>gnl|CDD|173488 PTZ00239, PTZ00239, serine/threonine protein phosphatase 2A;
Provisional.
Length = 303
Score = 400 bits (1030), Expect = e-137
Identities = 154/248 (62%), Positives = 194/248 (78%), Gaps = 1/248 (0%)
Query: 329 EILAKESNVQEVKCPVTVCGDVHGQFHDLMELFKIGGKSPDTNYLFMGDYVDRGYYSVET 388
EI +ESNVQ V+ PV VCGD+HGQF+DL LFK GG P+ NY+F+GD+VDRGY SVET
Sbjct: 30 EIFLEESNVQPVRAPVNVCGDIHGQFYDLQALFKEGGDIPNANYIFIGDFVDRGYNSVET 89
Query: 389 VTLLVALKVRYRERITILRGNHESRQITQVYGFYDECLRKYGNANVWKFFTDLFDYLPLT 448
+ L+ LKV+Y IT+LRGNHESRQ TQVYGFY+E LRKYGN+N W+ F D+FD LPL
Sbjct: 90 MEYLLCLKVKYPGNITLLRGNHESRQCTQVYGFYEEILRKYGNSNPWRLFMDVFDCLPLA 149
Query: 449 ALVDGQIFCLHGGLSPSIDTLDHIRALDRLQEVPHEGPMCDLLWSDPDDRGGWGISPRGA 508
AL++GQI C+HGGLSP + T+D IR +DR E+PHEGP CDL+WSDP++ W ++ RGA
Sbjct: 150 ALIEGQILCVHGGLSPDMRTIDQIRTIDRKIEIPHEGPFCDLMWSDPEEVEYWAVNSRGA 209
Query: 509 GYTFGQDISETFNHSNGLTLVSRAHQLVMEGYN-WCHDRNVVTIFSAPNYCYRCGNQAAI 567
GY FG +++ F N LTL+ RAHQLVMEGY W D+N+VT++SAPNYCYRCGN A+I
Sbjct: 210 GYLFGAKVTKEFCRLNDLTLICRAHQLVMEGYKYWFPDQNLVTVWSAPNYCYRCGNIASI 269
Query: 568 MELDDGLK 575
+ LD+ L+
Sbjct: 270 LCLDENLQ 277
Score = 30.2 bits (68), Expect = 2.7
Identities = 10/43 (23%), Positives = 20/43 (46%)
Query: 8 KELDQWIEQLNECKQLTESQVKTLCDKEIRKAMEVFSLQQRSA 50
++D+ I L L E +K +C++ +E ++Q A
Sbjct: 1 MDIDRHIATLLNGGCLPERDLKLICERAKEIFLEESNVQPVRA 43
>gnl|CDD|197547 smart00156, PP2Ac, Protein phosphatase 2A homologues, catalytic
domain. Large family of serine/threonine phosphatases,
that includes PP1, PP2A and PP2B (calcineurin) family
members.
Length = 271
Score = 383 bits (987), Expect = e-131
Identities = 140/259 (54%), Positives = 182/259 (70%), Gaps = 2/259 (0%)
Query: 326 EITEILAKESNVQEVKCPVTVCGDVHGQFHDLMELFKIGGKSPDTNYLFMGDYVDRGYYS 385
E+ EI +E N+ EV PVTVCGD+HGQF DL+ LF G+ P+TNY+F+GDYVDRG +S
Sbjct: 12 EVKEIFRQEPNLVEVSAPVTVCGDIHGQFDDLLRLFDKNGQPPETNYVFLGDYVDRGPFS 71
Query: 386 VETVTLLVALKVRYRERITILRGNHESRQITQVYGFYDECLRKYGNANVWKFFTDLFDYL 445
+E + LL ALK+ Y RI +LRGNHESR + ++YGFYDEC RKYG +++ F + F +L
Sbjct: 72 IEVILLLFALKILYPNRIVLLRGNHESRSMNEIYGFYDECKRKYG-ERIYEKFNEAFSWL 130
Query: 446 PLTALVDGQIFCLHGGLSPSIDTLDHIRALDRLQEVPHEGPMCDLLWSDPDDR-GGWGIS 504
PL AL++G+I C+HGGLSP + TLD IR L R QE P +G + DLLWSDPD G+G S
Sbjct: 131 PLAALINGKILCMHGGLSPDLTTLDDIRKLKRPQEPPDDGLLIDLLWSDPDQPVNGFGPS 190
Query: 505 PRGAGYTFGQDISETFNHSNGLTLVSRAHQLVMEGYNWCHDRNVVTIFSAPNYCYRCGNQ 564
RGA Y FG D + F N L L+ RAHQ+V +GY + D +VTIFSAPNYC R GN+
Sbjct: 191 IRGASYIFGPDAVDEFLKKNNLKLIIRAHQVVDDGYEFFADGKLVTIFSAPNYCDRFGNK 250
Query: 565 AAIMELDDGLKYSLPLGNP 583
AA++++D LK + P
Sbjct: 251 AAVLKVDKDLKLTFEQFKP 269
>gnl|CDD|163657 cd07414, MPP_PP1_PPKL, PP1, PPKL (PP1 and kelch-like) enzymes, and
related proteins, metallophosphatase domain. PP1
(protein phosphatase type 1) is a serine/threonine
phosphatase that regulates many cellular processes
including: cell-cycle progression, protein synthesis,
muscle contraction, carbohydrate metabolism,
transcription and neuronal signaling, through its
interaction with at least 180 known targeting proteins.
PP1 occurs in all tissues and regulates many pathways,
ranging from cell-cycle progression to carbohydrate
metabolism. Also included here are the PPKL (PP1 and
kelch-like) enzymes including the PPQ, PPZ1, and PPZ2
fungal phosphatases. These PPKLs have a large
N-terminal kelch repeat in addition to a C-terminal
phosphoesterase domain. The PPP (phosphoprotein
phosphatase) family, to which PP1 belongs, is one of two
known protein phosphatase families specific for serine
and threonine. The PPP family also includes: PP2A, PP2B
(calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE,
PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain
is defined by three conserved motifs (-GDXHG-, -GDXVDRG-
and -GNHE-). The PPP enzyme family is ancient with
members found in all eukaryotes, and in most bacterial
and archeal genomes. Dephosphorylation of
phosphoserines and phosphothreonines on target proteins
plays a central role in the regulation of many cellular
processes. PPPs belong to the metallophosphatase (MPP)
superfamily. MPPs are functionally diverse, but all
share a conserved domain with an active site consisting
of two metal ions (usually manganese, iron, or zinc)
coordinated with octahedral geometry by a cage of
histidine, aspartate, and asparagine residues. The MPP
superfamily includes: Mre11/SbcD-like exonucleases,
Dbr1-like RNA lariat debranching enzymes, YfcE-like
phosphodiesterases, purple acid phosphatases (PAPs),
YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 293
Score = 318 bits (816), Expect = e-105
Identities = 125/257 (48%), Positives = 179/257 (69%), Gaps = 2/257 (0%)
Query: 328 TEILAKESNVQEVKCPVTVCGDVHGQFHDLMELFKIGGKSPDTNYLFMGDYVDRGYYSVE 387
EI + + E++ P+ +CGD+HGQ++DL+ LF+ GG P++NYLF+GDYVDRG S+E
Sbjct: 36 REIFLSQPILLELEAPLKICGDIHGQYYDLLRLFEYGGFPPESNYLFLGDYVDRGKQSLE 95
Query: 388 TVTLLVALKVRYRERITILRGNHESRQITQVYGFYDECLRKYGNANVWKFFTDLFDYLPL 447
T+ LL+A K++Y E +LRGNHE I ++YGFYDEC R+Y N +WK FTD F+ LP+
Sbjct: 96 TICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRY-NIKLWKTFTDCFNCLPV 154
Query: 448 TALVDGQIFCLHGGLSPSIDTLDHIRALDRLQEVPHEGPMCDLLWSDPD-DRGGWGISPR 506
A++D +IFC+HGGLSP + +++ IR + R +VP +G +CDLLWSDPD D GWG + R
Sbjct: 155 AAIIDEKIFCMHGGLSPDLQSMEQIRRIMRPTDVPDQGLLCDLLWSDPDKDVQGWGENDR 214
Query: 507 GAGYTFGQDISETFNHSNGLTLVSRAHQLVMEGYNWCHDRNVVTIFSAPNYCYRCGNQAA 566
G +TFG+D+ F + + L L+ RAHQ+V +GY + R +VT+FSAPNYC N A
Sbjct: 215 GVSFTFGKDVVAKFLNKHDLDLICRAHQVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGA 274
Query: 567 IMELDDGLKYSLPLGNP 583
+M +D+ L S + P
Sbjct: 275 MMSVDETLMCSFQILKP 291
>gnl|CDD|227423 COG5092, NMT1, N-myristoyl transferase [Lipid metabolism].
Length = 451
Score = 294 bits (755), Expect = 7e-94
Identities = 124/311 (39%), Positives = 169/311 (54%), Gaps = 23/311 (7%)
Query: 45 LQQRSAKTPEEALQ-----KQYQFWSTQPVPKIDEKITTNGPIELDKSPSEIRAEPYSLP 99
LQ + T + + K ++FWSTQPV + DE+ GPI+ E P L
Sbjct: 17 LQLNNDDTSKFTQEQKKMGKDHKFWSTQPVDRFDEEAMPEGPIDKHTISIEQPKLPDGLL 76
Query: 100 PGFQWDTLNLDDPLVLEELYKLLNENYVEDEDSM------------ALQAPGWCKEWHCG 147
F+W +++ + LE+++ LL ENYVED + AL PG K WH G
Sbjct: 77 FEFEWCVIDVANKKQLEDVFVLLEENYVEDIYAGHRFRYSVEFLQWALDGPGGKKRWHIG 136
Query: 148 VRVSKSNVLVAFISAIPATLSIYGVSQKMVEINFLCVHKKLRSKRVAPVLIREITRRVNL 207
VRV + LVAFISA P +S+ G ++E+NFLC+HK+LRSKR+ PVLI+EITRR N+
Sbjct: 137 VRVKGTQKLVAFISAKPHLVSVRGKRSSVLEVNFLCIHKELRSKRLTPVLIKEITRRANV 196
Query: 208 KGLFQAVYTAGVVLPKPVGTCRYWHRSLNPKKLIEVKFSHLSRNMTMKRTLKLYGLPETT 267
G+++AVYTAG LP PV RY+HR LN KKL FS L T K LP T
Sbjct: 197 DGIWRAVYTAGTELPSPVSQGRYYHRPLNWKKLYMCGFSGLPDGRTEKVKEARNALPAKT 256
Query: 268 KVFGFRPLQEADIPKAHKVLCEFFLRFDLAPIFSEEEFKHWFLPRDGI-----VYTFVVE 322
K G R +E D+ ++ E+ RF+L F EE H F P + Y++VVE
Sbjct: 257 KTEGLRLAEEKDMEDVARLYLEYSRRFELYEEFRFEEIVHTFRPVKNVVDKQVTYSYVVE 316
Query: 323 N-DGEITEILA 332
+G+IT+ +
Sbjct: 317 EPNGKITDFFS 327
>gnl|CDD|163659 cd07416, MPP_PP2B, PP2B, metallophosphatase domain. PP2B
(calcineurin) is a unique serine/threonine protein
phosphatase in its regulation by a second messenger
(calcium and calmodulin). PP2B is involved in many
biological processes including immune responses, the
second messenger cAMP pathway, sodium/potassium ion
transport in the nephron, cell cycle progression in
lower eukaryotes, cardiac hypertrophy, and memory
formation. PP2B is highly conserved from yeast to
humans, but is absent from plants. PP2B is a
heterodimer consisting of a catalytic subunit (CnA) and
a regulatory subunit (CnB); CnB contains four Ca2+
binding motifs referred to as EF hands. The PPP
(phosphoprotein phosphatase) family, to which PP2B
belongs, is one of two known protein phosphatase
families specific for serine and threonine. The PPP
family also includes: PP1, PP2A, PP4, PP5, PP6, PP7,
Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP
catalytic domain is defined by three conserved motifs
(-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family
is ancient with members found in all eukaryotes, and in
most bacterial and archeal genomes. Dephosphorylation
of phosphoserines and phosphothreonines on target
proteins plays a central role in the regulation of many
cellular processes. PPPs belong to the
metallophosphatase (MPP) superfamily. MPPs are
functionally diverse, but all share a conserved domain
with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 305
Score = 283 bits (725), Expect = 3e-91
Identities = 116/259 (44%), Positives = 158/259 (61%), Gaps = 17/259 (6%)
Query: 328 TEILAKESNVQEVKCPVTVCGDVHGQFHDLMELFKIGGKSPDTNYLFMGDYVDRGYYSVE 387
EIL +E N+ ++ PVTVCGD+HGQF+DL++LF++GG +T YLF+GDYVDRGY+S+E
Sbjct: 29 AEILRQEPNLLRIEAPVTVCGDIHGQFYDLLKLFEVGGSPANTRYLFLGDYVDRGYFSIE 88
Query: 388 TVTLLVALKVRYRERITILRGNHESRQITQVYGFYDECLRKYGNANVWKFFTDLFDYLPL 447
V L ALK+ Y + + +LRGNHE R +T+ + F EC KY V+ + FD LPL
Sbjct: 89 CVLYLWALKILYPKTLFLLRGNHECRHLTEYFTFKQECKIKYSER-VYDACMEAFDCLPL 147
Query: 448 TALVDGQIFCLHGGLSPSIDTLDHIRALDRLQEVPHEGPMCDLLWSDP-DDRGGWGISP- 505
AL++ Q C+HGGLSP + TLD IR LDR +E P GPMCDLLWSDP +D G
Sbjct: 148 AALMNQQFLCVHGGLSPELKTLDDIRKLDRFREPPAFGPMCDLLWSDPLEDFGNEKTQEH 207
Query: 506 ------RGAGYTFGQDISETFNHSNGLTLVSRAHQLVMEGYNWCHDRN-------VVTIF 552
RG Y + F N L + RAH+ GY + ++ ++TIF
Sbjct: 208 FVHNTVRGCSYFYSYRAVCEFLQKNNLLSIIRAHEAQDAGYRM-YRKSQTTGFPSLITIF 266
Query: 553 SAPNYCYRCGNQAAIMELD 571
SAPNY N+AA+++ +
Sbjct: 267 SAPNYLDVYNNKAAVLKYE 285
>gnl|CDD|163660 cd07417, MPP_PP5_C, PP5, C-terminal metallophosphatase domain.
Serine/threonine protein phosphatase-5 (PP5) is a member
of the PPP gene family of protein phosphatases that is
highly conserved among eukaryotes and widely expressed
in mammalian tissues. PP5 has a C-terminal phosphatase
domain and an extended N-terminal TPR (tetratricopeptide
repeat) domain containing three TPR motifs. The PPP
(phosphoprotein phosphatase) family, to which PP5
belongs, is one of two known protein phosphatase
families specific for serine and threonine. The PPP
family also includes: PP1, PP2A, PP2B (calcineurin),
PP4, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4
hydrolase. The PPP catalytic domain is defined by three
conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The
PPP enzyme family is ancient with members found in all
eukaryotes, and in most bacterial and archeal genomes.
Dephosphorylation of phosphoserines and
phosphothreonines on target proteins plays a central
role in the regulation of many cellular processes. PPPs
belong to the metallophosphatase (MPP) superfamily.
MPPs are functionally diverse, but all share a conserved
domain with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 316
Score = 278 bits (714), Expect = 2e-89
Identities = 107/253 (42%), Positives = 159/253 (62%), Gaps = 9/253 (3%)
Query: 326 EITEILAKESNVQEVKCP----VTVCGDVHGQFHDLMELFKIGGKSPDTN-YLFMGDYVD 380
++ E+L K ++ E+ P +TVCGD HGQF+DL+ +F++ G +TN YLF GD+VD
Sbjct: 40 QVKELLKKLPSLVEITIPEGEKITVCGDTHGQFYDLLNIFELNGLPSETNPYLFNGDFVD 99
Query: 381 RGYYSVETVTLLVALKVRYRERITILRGNHESRQITQVYGFYDECLRKYGNANVWKFFTD 440
RG +SVE + L A K+ Y + RGNHE+ + ++YGF E KY N ++ F++
Sbjct: 100 RGSFSVEVILTLFAFKLLYPNHFHLNRGNHETDNMNKMYGFEGEVKAKY-NEQMFDLFSE 158
Query: 441 LFDYLPLTALVDGQIFCLHGGLSPSID--TLDHIRALDRLQEVPHEGPMCDLLWSDPDDR 498
+F++LPL L++G++ +HGGL S D TLD IR +DR ++ P G MC+LLWSDP +
Sbjct: 159 VFNWLPLAHLINGKVLVVHGGL-FSDDGVTLDDIRKIDRFRQPPDSGLMCELLWSDPQPQ 217
Query: 499 GGWGISPRGAGYTFGQDISETFNHSNGLTLVSRAHQLVMEGYNWCHDRNVVTIFSAPNYC 558
G S RG G FG D+++ F N L + R+H++ EGY HD +T+FSAPNYC
Sbjct: 218 PGRSPSKRGVGCQFGPDVTKRFLEENNLEYIIRSHEVKDEGYEVEHDGKCITVFSAPNYC 277
Query: 559 YRCGNQAAIMELD 571
+ GN+ A + +
Sbjct: 278 DQMGNKGAFIRIT 290
>gnl|CDD|185658 PTZ00480, PTZ00480, serine/threonine-protein phosphatase;
Provisional.
Length = 320
Score = 268 bits (686), Expect = 2e-85
Identities = 123/256 (48%), Positives = 171/256 (66%), Gaps = 2/256 (0%)
Query: 329 EILAKESNVQEVKCPVTVCGDVHGQFHDLMELFKIGGKSPDTNYLFMGDYVDRGYYSVET 388
+I + + E++ P+ +CGDVHGQ+ DL+ LF+ GG P++NYLF+GDYVDRG S+ET
Sbjct: 46 DIFISQPILLELEAPLKICGDVHGQYFDLLRLFEYGGYPPESNYLFLGDYVDRGKQSLET 105
Query: 389 VTLLVALKVRYRERITILRGNHESRQITQVYGFYDECLRKYGNANVWKFFTDLFDYLPLT 448
+ LL+A K++Y E +LRGNHE I ++YGFYDEC R+Y +WK FTD F+ LP+
Sbjct: 106 ICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRY-TIKLWKTFTDCFNCLPVA 164
Query: 449 ALVDGQIFCLHGGLSPSIDTLDHIRALDRLQEVPHEGPMCDLLWSDPD-DRGGWGISPRG 507
AL+D +I C+HGGLSP + L+ IR + R +VP G +CDLLWSDPD D GW + RG
Sbjct: 165 ALIDEKILCMHGGLSPELSNLEQIRRIMRPTDVPDTGLLCDLLWSDPDKDVQGWADNERG 224
Query: 508 AGYTFGQDISETFNHSNGLTLVSRAHQLVMEGYNWCHDRNVVTIFSAPNYCYRCGNQAAI 567
Y F Q+I + F + L L+ RAHQ+V +GY + R +VT+FSAPNYC N ++
Sbjct: 225 VSYVFSQEIVQVFLKKHELDLICRAHQVVEDGYEFFSKRQLVTLFSAPNYCGEFDNAGSM 284
Query: 568 MELDDGLKYSLPLGNP 583
M +D+ L S + P
Sbjct: 285 MTIDESLMCSFQILKP 300
>gnl|CDD|110249 pfam01233, NMT, Myristoyl-CoA:protein N-myristoyltransferase,
N-terminal domain. The N and C-terminal domains of NMT
are structurally similar, each adopting an acyl-CoA
N-acyltransferase-like fold.
Length = 162
Score = 257 bits (658), Expect = 2e-83
Identities = 100/162 (61%), Positives = 122/162 (75%), Gaps = 12/162 (7%)
Query: 79 NGPIELDKSPSEIRAEPYSLPPGFQWDTLNLDDPLVLEELYKLLNENYVEDEDSM----- 133
GPI+ K+P ++R EP LP GF+W TL++DD L+ELY LLNENYVED+D+M
Sbjct: 1 EGPIDKPKTPDDVRQEPLPLPAGFEWSTLDIDDEEQLKELYVLLNENYVEDDDAMFRFNY 60
Query: 134 -------ALQAPGWCKEWHCGVRVSKSNVLVAFISAIPATLSIYGVSQKMVEINFLCVHK 186
AL+ PGW +WHCGVRV + LVAFISAIPAT+ + + KMVEINFLCVHK
Sbjct: 61 SPEFLNWALKPPGWRPDWHCGVRVKSTGKLVAFISAIPATIRVRDKTVKMVEINFLCVHK 120
Query: 187 KLRSKRVAPVLIREITRRVNLKGLFQAVYTAGVVLPKPVGTC 228
KLRSKR+APVLI+EITRRVNL G++QA+YTAG+VLP PV TC
Sbjct: 121 KLRSKRLAPVLIKEITRRVNLTGIWQALYTAGIVLPTPVSTC 162
>gnl|CDD|140271 PTZ00244, PTZ00244, serine/threonine-protein phosphatase PP1;
Provisional.
Length = 294
Score = 250 bits (640), Expect = 7e-79
Identities = 114/254 (44%), Positives = 166/254 (65%), Gaps = 2/254 (0%)
Query: 326 EITEILAKESNVQEVKCPVTVCGDVHGQFHDLMELFKIGGKSPDTNYLFMGDYVDRGYYS 385
E+ EI + + E++ PV VCGD HGQ++DL+ +F+ G P +NYLF+GDYVDRG +S
Sbjct: 36 EVREIFMSQPMLLEIRPPVRVCGDTHGQYYDLLRIFEKCGFPPYSNYLFLGDYVDRGKHS 95
Query: 386 VETVTLLVALKVRYRERITILRGNHESRQITQVYGFYDECLRKYGNANVWKFFTDLFDYL 445
VET+TL K+ Y E +LRGNHE I ++YGF+D+ R+Y N ++K FTD+F+ +
Sbjct: 96 VETITLQFCYKIVYPENFFLLRGNHECASINKMYGFFDDVKRRY-NIKLFKAFTDVFNTM 154
Query: 446 PLTALVDGQIFCLHGGLSPSIDTLDHIRALDRLQEVPHEGPMCDLLWSDP-DDRGGWGIS 504
P+ ++ +I C+HGGLSP + +L + ++R +VP G +CDLLW+DP D+ G+ S
Sbjct: 155 PVCCVISEKIICMHGGLSPDLTSLASVNEIERPCDVPDRGILCDLLWADPEDEVRGFLES 214
Query: 505 PRGAGYTFGQDISETFNHSNGLTLVSRAHQLVMEGYNWCHDRNVVTIFSAPNYCYRCGNQ 564
RG Y FG+DI F + L+ RAHQ++ GY + R +VT+FSAPNYC N
Sbjct: 215 DRGVSYLFGEDIVNDFLDMVDMDLIVRAHQVMERGYGFFASRQLVTVFSAPNYCGEFDND 274
Query: 565 AAIMELDDGLKYSL 578
AA+M +DD L+ S
Sbjct: 275 AAVMNIDDKLQCSF 288
>gnl|CDD|163613 cd00144, MPP_PPP_family, phosphoprotein phosphatases of the
metallophosphatase superfamily, metallophosphatase
domain. The PPP (phosphoprotein phosphatase) family is
one of two known protein phosphatase families specific
for serine and threonine. This family includes: PP1,
PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1,
RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP
catalytic domain is defined by three conserved motifs
(-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family
is ancient with members found in all eukaryotes, and in
most bacterial and archeal genomes. Dephosphorylation
of phosphoserines and phosphothreonines on target
proteins plays a central role in the regulation of many
cellular processes. PPPs belong to the
metallophosphatase (MPP) superfamily. MPPs are
functionally diverse, but all share a conserved domain
with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 225
Score = 239 bits (612), Expect = 1e-75
Identities = 98/235 (41%), Positives = 132/235 (56%), Gaps = 19/235 (8%)
Query: 345 TVCGDVHGQFHDLMELFKIGGKSPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRERIT 404
V GD+HG DL+ L + G P+ +F+GDYVDRG SVE + LL+ALK+ + +
Sbjct: 1 YVIGDIHGCLDDLLRLLEKIGFPPNDKLIFLGDYVDRGPDSVEVIDLLLALKIL-PDNVI 59
Query: 405 ILRGNHESRQITQVYGFYDEC--------LRKYGNANVWKFFTDLFDYLPLTALVD-GQI 455
+LRGNHE + +YGFYDE L K ++W+ F D+F YLPL AL++ ++
Sbjct: 60 LLRGNHEDMLLNFLYGFYDEDEWIGGTLRLLKKLGEDLWEEFNDVFFYLPLAALIETKKV 119
Query: 456 FCLHGGLSPSIDTLDHIRALDRLQEVPHEGPMCDLLWSDPDDRGGWGISPRGAGYTFGQD 515
C+HGGLSP + + I +E P + DLLWSDP + G S R G G D
Sbjct: 120 LCVHGGLSPGLPLEEQI------KEEPEDQLPEDLLWSDPLELPGGFGSSRRGG---GPD 170
Query: 516 ISETFNHSNGLTLVSRAHQLVMEGYNWCHDRNVVTIFSAPNYCYRCGNQAAIMEL 570
E F NGL L+ R H V EGY + HD N++TI S NYC GN+ A + L
Sbjct: 171 AVEWFLKKNGLKLIVRGHTPVEEGYEFGHDGNLITIDSGCNYCGGGGNKLAALVL 225
>gnl|CDD|163662 cd07419, MPP_Bsu1_C, Arabidopsis thaliana Bsu1 phosphatase and
related proteins, C-terminal metallophosphatase domain.
Bsu1 encodes a nuclear serine-threonine protein
phosphatase found in plants and protozoans. Bsu1 has a
C-terminal phosphatase domain and an N-terminal
Kelch-repeat domain. Bsu1 is preferentially expressed
in elongating plant cells. It modulates the
phosphorylation state of Bes1, a transcriptional
regulator phosphorylated by the glycogen synthase kinase
Bin2, as part of a steroid hormone signal transduction
pathway. The PPP (phosphoprotein phosphatase) family,
to which Bsu1 belongs, is one of two known protein
phosphatase families specific for serine and threonine.
The PPP family also includes: PP1, PP2A, PP2B
(calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE,
PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain
is defined by three conserved motifs (-GDXHG-, -GDXVDRG-
and -GNHE-). The PPP enzyme family is ancient with
members found in all eukaryotes, and in most bacterial
and archeal genomes. Dephosphorylation of
phosphoserines and phosphothreonines on target proteins
plays a central role in the regulation of many cellular
processes. PPPs belong to the metallophosphatase (MPP)
superfamily. MPPs are functionally diverse, but all
share a conserved domain with an active site consisting
of two metal ions (usually manganese, iron, or zinc)
coordinated with octahedral geometry by a cage of
histidine, aspartate, and asparagine residues. The MPP
superfamily includes: Mre11/SbcD-like exonucleases,
Dbr1-like RNA lariat debranching enzymes, YfcE-like
phosphodiesterases, purple acid phosphatases (PAPs),
YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 311
Score = 229 bits (586), Expect = 1e-70
Identities = 106/268 (39%), Positives = 149/268 (55%), Gaps = 24/268 (8%)
Query: 326 EITEILAKESNVQEVKCPVTVCGDVHGQFHDLMELFKIGGKSPDTN---------YLFMG 376
+I +E V ++ P+ + GD+HGQF DLM LF G SP T YLF+G
Sbjct: 32 AAEDIFKQEPMVLRLRAPIKIFGDIHGQFGDLMRLFDEYG-SPVTEAAGDIEYIDYLFLG 90
Query: 377 DYVDRGYYSVETVTLLVALKVRYRERITILRGNHESRQITQVYGFYDECLRKYGNA---- 432
DYVDRG S+ET+ LL+ALKV+Y +I ++RGNHE R I ++GF +EC + G
Sbjct: 91 DYVDRGSNSLETICLLLALKVKYPNQIHLIRGNHEDRDINALFGFREECKERLGEDPNDG 150
Query: 433 -NVWKFFTDLFDYLPLTALVDGQIFCLHGGLSPSIDTLDHIRALDRLQEVPHEGP-MCDL 490
+VW+ LF++LPL A+++ +I C+HGG+ SI+ + I L R + + DL
Sbjct: 151 DSVWRRINRLFEWLPLAAIIEDKILCMHGGIGRSINHVSEIEDLKRPLTMEFGEQVVMDL 210
Query: 491 LWSDPDDRGGW------GISPRGAG--YTFGQDISETFNHSNGLTLVSRAHQLVMEGYNW 542
LWSDP + I PRG G FG D F N L ++ RAH+ VM+G+
Sbjct: 211 LWSDPTENDSVLGLRPNAIDPRGPGLIVKFGPDRVHRFLEENDLQMIIRAHECVMDGFER 270
Query: 543 CHDRNVVTIFSAPNYCYRCGNQAAIMEL 570
++T+FSA NYC GN AI+ L
Sbjct: 271 FAQGKLITLFSATNYCGTAGNAGAILVL 298
>gnl|CDD|163663 cd07420, MPP_RdgC, Drosophila melanogaster RdgC and related
proteins, metallophosphatase domain. RdgC (retinal
degeneration C) is a vertebrate serine-threonine protein
phosphatase that is required to prevent light-induced
retinal degeneration. In addition to its catalytic
domain, RdgC has two C-terminal EF hands. Homologs of
RdgC include the human phosphatases protein phosphatase
with EF hands 1 and -2 (PPEF-1 and -2). PPEF-1
transcripts are present at low levels in the retina,
PPEF-2 transcripts and PPEF-2 protein are present at
high levels in photoreceptors. The PPP (phosphoprotein
phosphatase) family, to which RdgC belongs, is one of
two known protein phosphatase families specific for
serine and threonine. The PPP family also includes:
PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1,
PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic
domain is defined by three conserved motifs (-GDXHG-,
-GDXVDRG- and -GNHE-). The PPP enzyme family is ancient
with members found in all eukaryotes, and in most
bacterial and archeal genomes. Dephosphorylation of
phosphoserines and phosphothreonines on target proteins
plays a central role in the regulation of many cellular
processes. PPPs belong to the metallophosphatase (MPP)
superfamily. MPPs are functionally diverse, but all
share a conserved domain with an active site consisting
of two metal ions (usually manganese, iron, or zinc)
coordinated with octahedral geometry by a cage of
histidine, aspartate, and asparagine residues. The MPP
superfamily includes: Mre11/SbcD-like exonucleases,
Dbr1-like RNA lariat debranching enzymes, YfcE-like
phosphodiesterases, purple acid phosphatases (PAPs),
YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 321
Score = 174 bits (443), Expect = 9e-50
Identities = 99/288 (34%), Positives = 144/288 (50%), Gaps = 42/288 (14%)
Query: 326 EITEILAKESNVQEVK-CP---VTVCGDVHGQFHDLMELF-KIGGKSPDTNYLFMGDYVD 380
E ++L + N+ V VT+CGD+HG+ DL +F K G SP+ Y+F GD+VD
Sbjct: 31 EARKVLKQLPNISRVSTSISKQVTICGDLHGKLDDLFLIFYKNGLPSPENPYVFNGDFVD 90
Query: 381 RGYYSVETVTLLVALKVRYRERITILRGNHESRQITQVYGFYDECLRKYG--NANVWKFF 438
RG S+E + +L A + Y + + RGNHE + YGF E + KY + +
Sbjct: 91 RGKRSIEILIILFAFFLVYPNEVHLNRGNHEDHIMNLRYGFTKEVMSKYKLHGKKILRLL 150
Query: 439 TDLFDYLPLTALVDGQIFCLHGGLSPSIDTLDHIRALDR----------------LQEVP 482
D+F +LPL ++D +I +HGG+S S D LD + +DR
Sbjct: 151 EDVFSWLPLATIIDNKILVVHGGISDSTD-LDLLDKIDRHKYVSVLRPPLRKGMEELTGE 209
Query: 483 HEGPMC-----------DLLWSDPDDRGGWGISP---RGAGYTFGQDISETFNHSNGLTL 528
E P D+LWSDP + G P RG G FG D++ +GL+L
Sbjct: 210 EEDPSEPLDKTEWRQILDILWSDP--KAQKGCKPNTFRGGGCYFGPDVTSKVLQKHGLSL 267
Query: 529 VSRAHQLVMEGYNWCHDRNVVTIFSAPNYCYRCG-NQAAIMELDDGLK 575
+ R+H+ EGY +CH+ V+TIFSA NY Y G N+ A ++L L
Sbjct: 268 LIRSHECKPEGYEFCHNNKVITIFSASNY-YEEGSNRGAYIKLGPDLT 314
>gnl|CDD|163661 cd07418, MPP_PP7, PP7, metallophosphatase domain. PP7 is a plant
phosphoprotein phosphatase that is highly expressed in a
subset of stomata and thought to play an important role
in sensory signaling. PP7 acts as a positive regulator
of signaling downstream of cryptochrome blue light
photoreceptors. PP7 also controls amplification of
phytochrome signaling, and interacts with
nucleotidediphosphate kinase 2 (NDPK2), a positive
regulator of phytochrome signalling. In addition, PP7
interacts with heat shock transcription factor HSF and
up-regulates protective heat shock proteins. PP7 may
also play a role in salicylic acid-dependent defense
signaling. The PPP (phosphoprotein phosphatase) family,
to which PP7 belongs, is one of two known protein
phosphatase families specific for serine and threonine.
The PPP family also includes: PP2A, PP2B (calcineurin),
PP4, PP5, PP6, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4
hydrolase. The PPP catalytic domain is defined by three
conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The
PPP enzyme family is ancient with members found in all
eukaryotes, and in most bacterial and archeal genomes.
Dephosphorylation of phosphoserines and
phosphothreonines on target proteins plays a central
role in the regulation of many cellular processes. PPPs
belong to the metallophosphatase (MPP) superfamily.
MPPs are functionally diverse, but all share a conserved
domain with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 377
Score = 167 bits (424), Expect = 2e-46
Identities = 98/286 (34%), Positives = 143/286 (50%), Gaps = 58/286 (20%)
Query: 328 TEILAKESNVQEV----KCPVTVCGDVHGQFHDLMELFKIGGK-SPDTNYLFMGDYVDRG 382
+IL +E N + C V V GDVHGQ HD++ L + G + Y+F GDYVDRG
Sbjct: 48 HKILHREPNCVRIDVEDVCEVVVVGDVHGQLHDVLFLLEDAGFPDQNRFYVFNGDYVDRG 107
Query: 383 YYSVETVTLLVALKVRYRERITILRGNHESRQITQVYGFYDECLRKYGN--ANVWKFFTD 440
+ +ET LL++ KV +R+ +LRGNHES+ T +YGF E L KYG+ +V++
Sbjct: 108 AWGLETFLLLLSWKVLLPDRVYLLRGNHESKFCTSMYGFEQEVLTKYGDKGKHVYRKCLG 167
Query: 441 LFDYLPLTALVDGQIFCLHGGL---------------------------SPSIDTLDHI- 472
F+ LPL +++ G+++ HGGL S + TLD +
Sbjct: 168 CFEGLPLASIIAGRVYTAHGGLFRSPSLPKRKKQKGKNRRVLLLEPESESLKLGTLDDLM 227
Query: 473 RALDRLQEVPHEGPMC---DLLWSDPDDRGGWGISP---RGAGYTFGQDISETFNHSNGL 526
+A + + P EG D+LWSDP G+SP RG G +G D +E F N L
Sbjct: 228 KARRSVLDPPGEGSNLIPGDVLWSDPSLTP--GLSPNKQRGIGLLWGPDCTEEFLEKNNL 285
Query: 527 TLVSRAHQ------------LVMEGYNWCHDRNV---VTIFSAPNY 557
L+ R+H+ + +GY HD +T+FSAP+Y
Sbjct: 286 KLIIRSHEGPDAREKRPGLAGMNKGYTVDHDVESGKLITLFSAPDY 331
>gnl|CDD|202401 pfam02799, NMT_C, Myristoyl-CoA:protein N-myristoyltransferase,
C-terminal domain. The N and C-terminal domains of NMT
are structurally similar, each adopting an acyl-CoA
N-acyltransferase-like fold.
Length = 190
Score = 143 bits (362), Expect = 1e-39
Identities = 51/88 (57%), Positives = 69/88 (78%), Gaps = 1/88 (1%)
Query: 242 EVKFSHLSRNMTMKRTLKLYGLPETTKVFGFRPLQEADIPKAHKVLCEFFLRFDLAPIFS 301
EV FSHL NMTM R +KLY LP+ TK G RP+++ D+P+ HK+L ++ RFDLAP+F+
Sbjct: 1 EVGFSHLPANMTMSRMVKLYKLPDETKTPGLRPMKKKDVPQVHKLLNKYLKRFDLAPVFT 60
Query: 302 EEEFKHWFLPRDGIVYTFVVEN-DGEIT 328
+EE HWFLPR+ +VY++VVEN DG+IT
Sbjct: 61 KEEVAHWFLPRENVVYSYVVENEDGKIT 88
>gnl|CDD|223712 COG0639, ApaH, Diadenosine tetraphosphatase and related
serine/threonine protein phosphatases [Signal
transduction mechanisms].
Length = 155
Score = 141 bits (356), Expect = 1e-39
Identities = 71/156 (45%), Positives = 85/156 (54%), Gaps = 10/156 (6%)
Query: 413 RQITQVYGFYDECLRKYGNANVWKF---FTDLFDYLPLTALVDGQ-IFCLHGGLSPSID- 467
+T +YGFYDE LRKYG W + FD LPL A+ +G + C HGGLSP +D
Sbjct: 1 MLLTALYGFYDEKLRKYGEELEWLRAAGGLETFDSLPLAAVAEGGKLLCHHGGLSPGLDR 60
Query: 468 TLDHIRALDRLQ--EVPHEGPMCDLLWSDPD--DRGGWGISPRGAGYTFGQDISETFNHS 523
LD I LDRL+ EVPH G DLLWSDPD DR W PRG G D++ F
Sbjct: 61 LLDIIEVLDRLRACEVPHAGHTHDLLWSDPDGGDRRIWNPGPRGVPRDGG-DVTAVFGIV 119
Query: 524 NGLTLVSRAHQLVMEGYNWCHDRNVVTIFSAPNYCY 559
+ L+ RAH L ++T FSAPNYCY
Sbjct: 120 HTPKLIERAHVLYDIDTGAVFGGGLLTAFSAPNYCY 155
>gnl|CDD|215750 pfam00149, Metallophos, Calcineurin-like phosphoesterase. This
family includes a diverse range of phosphoesterases,
including protein phosphoserine phosphatases,
nucleotidases, sphingomyelin phosphodiesterases and
2'-3' cAMP phosphodiesterases as well as nucleases such
as bacterial SbcD or yeast MRE11. The most conserved
regions in this superfamily centre around the metal
chelating residues.
Length = 185
Score = 118 bits (297), Expect = 6e-31
Identities = 57/162 (35%), Positives = 78/162 (48%), Gaps = 27/162 (16%)
Query: 343 PVTVCGDVHGQFHDL---MELFKIGGKSPDTNYLFMGDYVDRGYYSVETVTLLVALKVRY 399
+ V GD+HG DL + L ++ G+ LF+GD VDRG S+E + LL ALK++
Sbjct: 1 RILVIGDLHGGLDDLDLLLLLLELLGEPKPDLVLFLGDLVDRGPPSLEVLALLFALKLKA 60
Query: 400 RERITILRGNHESRQITQVYGFYDEC------------------------LRKYGNANVW 435
+ ++RGNH+ GFY EC L G VW
Sbjct: 61 PGPVYLVRGNHDFDSGNSELGFYLECAGLPYVLGNGDVSNGTVEIIGLSSLYGKGGGLVW 120
Query: 436 KFFTDLFDYLPLTALVDGQIFCLHGGLSPSIDTLDHIRALDR 477
+ F +L D L L ALVDG+I +HG LSPS+D+ D I
Sbjct: 121 EEFLELLDLLLLAALVDGKILLVHGPLSPSLDSGDDIYLFGE 162
>gnl|CDD|163614 cd00838, MPP_superfamily, metallophosphatase superfamily,
metallophosphatase domain. Metallophosphatases (MPPs),
also known as metallophosphoesterases,
phosphodiesterases (PDEs), binuclear
metallophosphoesterases, and dimetal-containing
phosphoesterases (DMPs), represent a diverse superfamily
of enzymes with a conserved domain containing an active
site consisting of two metal ions (usually manganese,
iron, or zinc) coordinated with octahedral geometry by a
cage of histidine, aspartate, and asparagine residues.
This superfamily includes: the phosphoprotein
phosphatases (PPPs), Mre11/SbcD-like exonucleases,
Dbr1-like RNA lariat debranching enzymes, YfcE-like
phosphodiesterases, purple acid phosphatases (PAPs),
YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 131
Score = 43.8 bits (103), Expect = 3e-05
Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 4/69 (5%)
Query: 346 VCGDVHGQFHDLMELFK---IGGKSPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRER 402
V D+HG L + + + PD L +GD V G E + +AL +
Sbjct: 2 VISDIHGNLEALEAVLEAALAAAEKPDF-VLVLGDLVGDGPDPEEVLAAALALLLLLGIP 60
Query: 403 ITILRGNHE 411
+ ++ GNH+
Sbjct: 61 VYVVPGNHD 69
>gnl|CDD|163668 cd07425, MPP_Shelphs, Shewanella-like phosphatases,
metallophosphatase domain. This family includes
bacterial, eukaryotic, and archeal proteins orthologous
to the Shewanella cold-active protein-tyrosine
phosphatase, CAPTPase. CAPTPase is an uncharacterized
protein that belongs to the Shelph (Shewanella-like
phosphatase) family of PPP (phosphoprotein
phosphatases). The PPP family is one of two known
protein phosphatase families specific for serine and
threonine. In addition to Shelps, the PPP family also
includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6,
PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase.
The PPP catalytic domain is defined by three conserved
motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme
family is ancient with members found in all eukaryotes,
and in most bacterial and archeal genomes.
Dephosphorylation of phosphoserines and
phosphothreonines on target proteins plays a central
role in the regulation of many cellular processes. PPPs
belong to the metallophosphatase (MPP) superfamily.
MPPs are functionally diverse, but all share a conserved
domain with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 208
Score = 44.9 bits (107), Expect = 4e-05
Identities = 33/142 (23%), Positives = 55/142 (38%), Gaps = 31/142 (21%)
Query: 348 GDVHGQFHDLMELFKIGG-KSPDTNYLF-------MGDYVDRGYYSVETVTLLVALKVRY 399
GD+HG E+ K G + +++ +GD DRG +E + LL L+
Sbjct: 4 GDLHGDLDAFREILKGAGVIDSNDHWIGGSTHLVQLGDIFDRGPDVIEILWLLYKLEQEA 63
Query: 400 RE---RITILRGNHESRQI-----------TQVYGFYDECLRKYGNANVWKFFTDLFDYL 445
+ ++ L GNHE + +G R+ + +L +L
Sbjct: 64 AKAGGKVHFLLGNHELMNLCGDFRYVHPKYFNEFGGLAMRRRELFSPG-----GELGRWL 118
Query: 446 ---PLTALVDGQIFCLHGGLSP 464
P+ V+ +F HGGL P
Sbjct: 119 RSKPVIVKVNDTLFV-HGGLGP 139
>gnl|CDD|163667 cd07424, MPP_PrpA_PrpB, PrpA and PrpB, metallophosphatase domain.
PrpA and PrpB are bacterial type I serine/threonine and
tyrosine phosphatases thought to modulate the expression
of proteins that protect the cell upon accumulation of
misfolded proteins in the periplasm. The PPP
(phosphoprotein phosphatase) family, to which PrpA and
PrpB belong, is one of two known protein phosphatase
families specific for serine and threonine. This family
also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5,
PP6, PP7, Bsu1, RdgC, PrpE, and ApA4 hydrolase. The PPP
catalytic domain is defined by three conserved motifs
(-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family
is ancient with members found in all eukaryotes, and in
most bacterial and archeal genomes. Dephosphorylation
of phosphoserines and phosphothreonines on target
proteins plays a central role in the regulation of many
cellular processes. PPPs belong to the
metallophosphatase (MPP) superfamily. MPPs are
functionally diverse, but all share a conserved domain
with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 207
Score = 43.0 bits (102), Expect = 2e-04
Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 21/74 (28%)
Query: 346 VCGDVHGQFHDLMELFKIGGKSPDTNYLF-MGDYVDRGYYSVETVTLL-------VALKV 397
V GD+HG + L + G P + L +GD +DRG S+ + LL V
Sbjct: 5 VVGDIHGHYSLLQKALDAVGFDPARDRLISVGDLIDRGPESLACLELLLEPWFHAV---- 60
Query: 398 RYRERITILRGNHE 411
RGNHE
Sbjct: 61 ---------RGNHE 65
>gnl|CDD|107154 PHA02239, PHA02239, putative protein phosphatase.
Length = 235
Score = 43.1 bits (101), Expect = 2e-04
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Query: 344 VTVCGDVHGQFHDLMELFK--IGGKSPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRE 401
+ V D+HG++ L+ + + P+ +F+GDYVDRG S + V + L +
Sbjct: 3 IYVVPDIHGEYQKLLTIMDKINNERKPEETIVFLGDYVDRGKRSKDVVNYIFDLMSN-DD 61
Query: 402 RITILRGNHE 411
+ L GNH+
Sbjct: 62 NVVTLLGNHD 71
>gnl|CDD|163656 cd07413, MPP_PA3087, Pseudomonas aeruginosa PA3087 and related
proteins, metallophosphatase domain. PA3087 is an
uncharacterized protein from Pseudomonas aeruginosa with
a metallophosphatase domain that belongs to the
phosphoprotein phosphatase (PPP) family. The PPP family
also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5,
PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4
hydrolase. The PPP catalytic domain is defined by three
conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The
PPP enzyme family is ancient with members found in all
eukaryotes, and in most bacterial and archeal genomes.
Dephosphorylation of phosphoserines and
phosphothreonines on target proteins plays a central
role in the regulation of many cellular processes. PPPs
belong to the metallophosphatase (MPP) superfamily.
MPPs are functionally diverse, but all share a conserved
domain with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 222
Score = 40.7 bits (96), Expect = 9e-04
Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 10/72 (13%)
Query: 348 GDVHGQFHDLMELFK------IGGKSPDTN--YLFMGDYVDRGYYSVETVTLLVALKVRY 399
GD+HG L+ L + G +F+GD +DRG E + ++ ++ V
Sbjct: 5 GDIHGHAEKLVVLLHKLGYQELSGVYRHPERQVVFLGDLIDRGPEIRELLEIVKSM-VDA 63
Query: 400 RERITILRGNHE 411
+ ++ GNHE
Sbjct: 64 GHALAVM-GNHE 74
>gnl|CDD|163665 cd07422, MPP_ApaH, Escherichia coli ApaH and related proteins,
metallophosphatase domain. ApaH (also known as
symmetrically cleaving Ap4A hydrolase and
bis(5'nucleosyl)-tetraphosphatase) is a bacterial member
of the PPP (phosphoprotein phosphatase) family of
serine/threonine phosphatases that hydrolyzes the
nucleotide-signaling molecule diadenosine tetraphosphate
(Ap(4)A) into two ADP and also hydrolyzes Ap(5)A,
Gp(4)G, and other extending compounds. Null mutations
in apaH result in high intracellular levels of Ap(4)A
which correlate with multiple phenotypes, including a
decreased expression of catabolite-repressible genes, a
reduction in the expression of flagellar operons, and an
increased sensitivity to UV and heat. Ap4A hydrolase
is important in responding to heat shock and oxidative
stress via regulating the concentration of Ap4A in
bacteria. Ap4A hydrolase is also thought to play a role
in siderophore production, but the mechanism by which
ApaH interacts with siderophore pathways in unknown.
The PPP (phosphoprotein phosphatase) family, to which
ApaH belongs, is one of two known protein phosphatase
families specific for serine and threonine. The PPP
family also includes: PP1, PP2A, PP2B (calcineurin),
PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, and PrpA/PrpB. The
PPP catalytic domain is defined by three conserved
motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme
family is ancient with members found in all eukaryotes,
and in most bacterial and archeal genomes.
Dephosphorylation of phosphoserines and
phosphothreonines on target proteins plays a central
role in the regulation of many cellular processes. PPPs
belong to the metallophosphatase (MPP) superfamily.
MPPs are functionally diverse, but all share a conserved
domain with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 257
Score = 39.8 bits (94), Expect = 0.002
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Query: 348 GDVHGQFHDLMELFKIGGKSPDTNYL-FMGDYVDRGYYSVETVTLLVALKVRYRERITIL 406
GD+ G + +L L + P + L +GD V+RG S+ET+ + +L + +
Sbjct: 5 GDIQGCYDELQRLLEKINFDPAKDRLWLVGDLVNRGPDSLETLRFVKSLG----DSAKTV 60
Query: 407 RGNHE 411
GNH+
Sbjct: 61 LGNHD 65
>gnl|CDD|163664 cd07421, MPP_Rhilphs, Rhilph phosphatases, metallophosphatase
domain. Rhilphs (Rhizobiales/ Rhodobacterales/
Rhodospirillaceae-like phosphatases) are a
phylogenetically distinct group of PPP (phosphoprotein
phosphatases), found only in land plants. They are named
for their close relationship to to PPP phosphatases from
alpha-Proteobacteria, including Rhizobiales,
Rhodobacterales and Rhodospirillaceae. The PPP
(phosphoprotein phosphatase) family, to which the
Rhilphs belong, is one of two known protein phosphatase
families specific for serine and threonine. The PPP
family also includes: PP1, PP2A, PP2B (calcineurin),
PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and
ApA4 hydrolase. The PPP catalytic domain is defined by
three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-).
The PPP enzyme family is ancient with members found in
all eukaryotes, and in most bacterial and archeal
genomes. Dephosphorylation of phosphoserines and
phosphothreonines on target proteins plays a central
role in the regulation of many cellular processes. PPPs
belong to the metallophosphatase (MPP) superfamily.
MPPs are functionally diverse, but all share a conserved
domain with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 304
Score = 39.4 bits (92), Expect = 0.003
Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 8/76 (10%)
Query: 344 VTVC-GDVHGQFHDLMELF-----KIGGKSPDTNY-LFMGDYVDRGYYSVETVTLLVALK 396
V +C GD+HG L L+ +G + +F+GDY DRG + + + L++L
Sbjct: 3 VVICVGDIHGYISKLNNLWLNLQSALGPSDFASALVIFLGDYCDRGPETRKVIDFLISLP 62
Query: 397 VRY-RERITILRGNHE 411
++ ++R L GNH+
Sbjct: 63 EKHPKQRHVFLCGNHD 78
>gnl|CDD|163666 cd07423, MPP_PrpE, Bacillus subtilis PrpE and related proteins,
metallophosphatase domain. PrpE (protein phosphatase E)
is a bacterial member of the PPP (phosphoprotein
phosphatase) family of serine/threonine phosphatases and
a key signal transduction pathway component controlling
the expression of spore germination receptors GerA and
GerK in Bacillus subtilis. PrpE is closely related to
ApaH (also known symmetrical Ap(4)A hydrolase and
bis(5'nucleosyl)-tetraphosphatase). PrpE has
specificity for phosphotyrosine only, unlike the
serine/threonine phosphatases to which it is related.
The Bacilli members of this family are single domain
proteins while the other members have N- and C-terminal
domains in addition to this phosphatase domain. The PPP
(phosphoprotein phosphatase) family, to which PrpE
belongs, is one of two known protein phosphatase
families specific for serine and threonine. The PPP
family also includes: PP1, PP2A, PP2B (calcineurin),
PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpA/PrpB, and ApA4
hydrolase. The PPP catalytic domain is defined by three
conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The
PPP enzyme family is ancient with members found in all
eukaryotes, and in most bacterial and archeal genomes.
Dephosphorylation of phosphoserines and
phosphothreonines on target proteins plays a central
role in the regulation of many cellular processes. PPPs
belong to the metallophosphatase (MPP) superfamily.
MPPs are functionally diverse, but all share a conserved
domain with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 234
Score = 38.4 bits (90), Expect = 0.005
Identities = 36/147 (24%), Positives = 59/147 (40%), Gaps = 36/147 (24%)
Query: 343 PVTVCGDVHGQFHDLMELFKIGGKSPDTNY----------LFMGDYVDRGYYSVETVTL- 391
P + GDVHG + +L EL + G +F+GD VDRG S E + L
Sbjct: 2 PFDIIGDVHGCYDELEELLEKLGYRIKRVGTVTHPEGRRAVFVGDLVDRGPDSPEVLRLV 61
Query: 392 --LVALKVRYRERITILRGNHES--------RQITQVYGFYDECLRKYGN------ANVW 435
+VA + GNH++ R + +G +E + + V
Sbjct: 62 MSMVAAGAAL-----CVPGNHDNKLYRKLQGRNVKITHGL-EETVAQLEAESEEFKEEVI 115
Query: 436 KFFTDLFDYLPLTALVDGQIFCLHGGL 462
+F+ L +L L +G++ H G+
Sbjct: 116 EFYESLPSHLVLD---EGKLVVAHAGI 139
>gnl|CDD|236911 PRK11439, pphA, serine/threonine protein phosphatase 1;
Provisional.
Length = 218
Score = 37.8 bits (88), Expect = 0.007
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 9/70 (12%)
Query: 344 VTVCGDVHGQFHDLMELFKIGGKSPDTNYLF-MGDYVDRGYYSVETVTLLVALKVRYRER 402
+ + GD+HG F LM + P + L +GD +DRG S+ + LL E
Sbjct: 19 IWLVGDIHGCFEQLMRKLRHCRFDPWRDLLISVGDLIDRGPQSLRCLQLL-------EEH 71
Query: 403 -ITILRGNHE 411
+ +RGNHE
Sbjct: 72 WVRAVRGNHE 81
>gnl|CDD|234673 PRK00166, apaH, diadenosine tetraphosphatase; Reviewed.
Length = 275
Score = 37.5 bits (88), Expect = 0.013
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Query: 348 GDVHGQFHDLMELFKIGGKSPDTNYL-FMGDYVDRGYYSVETVTLLVALKVRYRERITIL 406
GD+ G + +L L + P + L +GD V+RG S+E + + +L + +
Sbjct: 7 GDIQGCYDELQRLLEKIDFDPAKDTLWLVGDLVNRGPDSLEVLRFVKSL----GDSAVTV 62
Query: 407 RGNHE 411
GNH+
Sbjct: 63 LGNHD 67
>gnl|CDD|184187 PRK13625, PRK13625, bis(5'-nucleosyl)-tetraphosphatase PrpE;
Provisional.
Length = 245
Score = 35.8 bits (83), Expect = 0.046
Identities = 34/144 (23%), Positives = 59/144 (40%), Gaps = 33/144 (22%)
Query: 346 VCGDVHGQFHDLMELFKIGGKS--------PDTNYL-FMGDYVDRGYYSVETVTLLVAL- 395
+ GD+HG + + L + G + PD L F+GD DRG +S+ + ++ L
Sbjct: 5 IIGDIHGCYQEFQALTEKLGYNWSSGLPVHPDQRKLAFVGDLTDRGPHSLRMIEIVWELV 64
Query: 396 ---KVRYRERITILRGNH--------ESRQITQVYGFYD-----ECLRKYGNANVWKFFT 439
Y + GNH R +T +G E L + + + F
Sbjct: 65 EKKAAYY------VPGNHCNKLYRFFLGRNVTIAHGLETTVAEYEALPSHKQNMIKEKFI 118
Query: 440 DLFDYLPLTALVD-GQIFCLHGGL 462
L++ PL ++D G++ H G+
Sbjct: 119 TLYEQAPLYHILDEGRLVVAHAGI 142
>gnl|CDD|182173 PRK09968, PRK09968, serine/threonine-specific protein phosphatase
2; Provisional.
Length = 218
Score = 35.3 bits (81), Expect = 0.057
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 7/68 (10%)
Query: 346 VCGDVHGQFHDLMELFKIGGKSPDTNYLF-MGDYVDRGYYSVETVTLLVALKVRYRERIT 404
V GD+HG++ L P+T+ L +GD +DRG S+ + LL +
Sbjct: 19 VVGDIHGEYQLLQSRLHQLSFCPETDLLISVGDNIDRGPESLNVLRLL------NQPWFI 72
Query: 405 ILRGNHES 412
++GNHE+
Sbjct: 73 SVKGNHEA 80
>gnl|CDD|234457 TIGR04075, bacter_Pnkp, polynucleotide kinase-phosphatase. Members
of this protein family are the bacterial polynucleotide
kinase-phosphatase (Pnkp) whose genes occur paired with
genes for the 3' terminal RNA ribose
2'-O-methyltransferase Hen1. All members of the seed
alignment belong to a cassette with the Hen1. The pair
acts in bacterial RNA repair. This enzyme performs
end-healing reactions on broken RNA, preparing from the
RNA ligase to close the break. The working hypothesis is
that the combination of Pnkp (RNA repair) and Hen1 (RNA
modification) serves to first repair RNA damage from
ribotoxins and then perform a modification that prevents
the damage from recurring [Transcription, RNA
processing].
Length = 851
Score = 35.4 bits (82), Expect = 0.11
Identities = 28/108 (25%), Positives = 39/108 (36%), Gaps = 39/108 (36%)
Query: 343 PVTVCGDVHGQFHDLMEL---------FKIGGKSPDTNY------LFMGDYVDRGYYSVE 387
P + GDVHG +L L GG+ D + +F+GD VDRG S
Sbjct: 181 PFDIIGDVHGCRDELETLLEELGYQIERDEGGRPVDVTHPEGRKAVFVGDLVDRGPDSPG 240
Query: 388 TVTLL-------VALKVRYRERITILRGNHE--------SRQITQVYG 420
+ L+ AL V GNH+ R + +G
Sbjct: 241 VLRLVMGMVAAGTALCV---------PGNHDVKLLRALRGRNVKLTHG 279
>gnl|CDD|227315 COG4982, COG4982, 3-oxoacyl-[acyl-carrier protein].
Length = 866
Score = 31.4 bits (71), Expect = 1.8
Identities = 12/49 (24%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
Query: 279 DIPKAHKVLCEFFLRFDLAPIFSEEEFKHWFLPRDG-IVYTFVVENDGE 326
+ +L E FL DL + +E F+ D F + + GE
Sbjct: 811 YNDEKKPLLQEVFLDKDLEFFVASKEEARAFVDFDPEHTVIFEIPDSGE 859
>gnl|CDD|241289 cd01258, PHsplit_syntrophin, Syntrophin Split Pleckstrin homology
(PH) domain. Syntrophins are scaffold proteins that
associate with associate with the Duchenne muscular
dystrophy protein dystrophin and the dystrophin-related
proteins, utrophin and dystrobrevin to form the
dystrophin glycoprotein complex (DGC). There are 5
members: alpha, beta1, beta2, gamma1, and gamma2) all of
which contains a split (also called joined) PH domain
and a PDZ domain (PHN-PDZ-PHC). The split PH domain of
alpha-syntrophin adopts a canonical PH domain fold and
together with PDZ forms a supramodule functioning
synergistically in binding to inositol phospholipids.
The alpha-syntrophin PH-PDZ supramodule showed strong
binding to phosphoinositides PI(3,5)P2 and PI(5)P,
modest binding to PI(3,4)P2 and PI(4,5)P2, and weak
binding to PI(3)P, PI(4)P, and PI(3,4,5)P. There are a
large number of signaling proteins that bind to the PDZ
domain of syntrophins: nitric oxide synthase (nNOS),
aquaporin-4, voltage-gated sodium channels, potassium
channels, serine/threonine protein kinases, and the
ATP-binding cassette transporter A1. PH domains have
diverse functions, but in general are involved in
targeting proteins to the appropriate cellular location
or in the interaction with a binding partner. They share
little sequence conservation, but all have a common
fold, which is electrostatically polarized. Less than
10% of PH domains bind phosphoinositide phosphates
(PIPs) with high affinity and specificity. PH domains
are distinguished from other PIP-binding domains by
their specific high-affinity binding to PIPs with two
vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2
or PtdIns(3,4,5)P3 which results in targeting some PH
domain proteins to the plasma membrane. A few display
strong specificity in lipid binding. Any specificity is
usually determined by loop regions or insertions in the
N-terminus of the domain, which are not conserved across
all PH domains. PH domains are found in cellular
signaling proteins such as serine/threonine kinase,
tyrosine kinases, regulators of G-proteins, endocytotic
GTPases, adaptors, as well as cytoskeletal associated
molecules and in lipid associated enzymes.
Length = 89
Score = 28.8 bits (65), Expect = 1.9
Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 14/45 (31%)
Query: 231 WHR----------SLNPKKLIEVKFSHLSRNMTMK----RTLKLY 261
WHR +L+ +K I +K +++RN+T R L+L+
Sbjct: 14 WHRVLATLEEDALTLSIEKSIPLKMCYVTRNLTPPDPENRLLELH 58
>gnl|CDD|163640 cd07397, MPP_DevT, Myxococcus xanthus DevT and related proteins,
metallophosphatase domain. DevT is a component in the
C-signal response pathway in Myxococcus xanthus that
stimulates the developmentally regulated expression of
the FruA response regulator protein and is required for
methylation of FrzCD during fruiting body formation.
DevT mutants having an in-frame deletion in the devT
gene, display delayed aggregation and a cell autonomous
sporulation defect. DevT belongs to the
metallophosphatase (MPP) superfamily. MPPs are
functionally diverse, but all share a conserved domain
with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 238
Score = 30.4 bits (69), Expect = 1.9
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 13/70 (18%)
Query: 344 VTVCGDVHGQFH--DLMELFKIGGKSPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRE 401
+ + GDVHGQ+ D+ L + PD LF+GD+ + SV+ V + +L +
Sbjct: 3 IAIVGDVHGQWDLEDIKALHLLQ---PDL-VLFVGDFGNE---SVQLVRAISSLPLP--- 52
Query: 402 RITILRGNHE 411
+ IL GNH+
Sbjct: 53 KAVIL-GNHD 61
>gnl|CDD|173926 cd04301, NAT_SF, N-Acyltransferase superfamily: Various enzymes
that characteristically catalyze the transfer of an acyl
group to a substrate. NAT (N-Acyltransferase) is a
large superfamily of enzymes that mostly catalyze the
transfer of an acyl group to a substrate and are
implicated in a variety of functions, ranging from
bacterial antibiotic resistance to circadian rhythms in
mammals. Members include GCN5-related
N-Acetyltransferases (GNAT) such as Aminoglycoside
N-acetyltransferases, Histone N-acetyltransferase (HAT)
enzymes, and Serotonin N-acetyltransferase, which
catalyze the transfer of an acetyl group to a substrate.
The kinetic mechanism of most GNATs involves the ordered
formation of a ternary complex: the reaction begins with
Acetyl Coenzyme A (AcCoA) binding, followed by binding
of substrate, then direct transfer of the acetyl group
from AcCoA to the substrate, followed by product and
subsequent CoA release. Other family members include
Arginine/ornithine N-succinyltransferase, Myristoyl-CoA:
protein N-myristoyltransferase, and
Acyl-homoserinelactone synthase which have a similar
catalytic mechanism but differ in types of acyl groups
transferred. Leucyl/phenylalanyl-tRNA-protein
transferase and FemXAB nonribosomal peptidyltransferases
which catalyze similar peptidyltransferase reactions are
also included.
Length = 65
Score = 27.6 bits (62), Expect = 3.5
Identities = 12/48 (25%), Positives = 16/48 (33%), Gaps = 5/48 (10%)
Query: 154 NVLVAFISAIPATLSIYGVSQKMVEINFLCVHKKLRSKRVAPVLIREI 201
+V F S LS G I L V + R K + L+
Sbjct: 8 GEIVGFAS-----LSPDGSGGDTAYIGDLAVLPEYRGKGIGSALLEAA 50
>gnl|CDD|222199 pfam13527, Acetyltransf_9, Acetyltransferase (GNAT) domain. This
domain catalyzes N-acetyltransferase reactions.
Length = 127
Score = 28.7 bits (65), Expect = 4.1
Identities = 14/56 (25%), Positives = 22/56 (39%), Gaps = 5/56 (8%)
Query: 272 FRPLQEADIPKAHKVLCEFFLRFDLAPIFSEEEFKHWFLPRDGIVYTFVVENDGEI 327
RPL E D+ + ++L F D S E +F P +DG++
Sbjct: 2 IRPLTEDDLDEFLELLEYAFQVED-----SPAEIWEYFRPLLEEGRVLGAFDDGKL 52
>gnl|CDD|225055 COG2144, COG2144, Selenophosphate synthetase-related proteins
[General function prediction only].
Length = 324
Score = 29.3 bits (66), Expect = 5.5
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 8/52 (15%)
Query: 301 SEEEFKHWFL--PRDGIVYTFVVENDGEITEILAKESNVQEVKCPVTVCGDV 350
++ +F+ W P G V T E+ E+ ++ +E CP TV G+V
Sbjct: 246 ADVDFRQWLKRYPGSGFVLTVDPEDVEEVVDVF------EEEGCPATVIGEV 291
>gnl|CDD|163641 cd07398, MPP_YbbF-LpxH, Escherichia coli YbbF/LpxH and related
proteins, metallophosphatase domain. YbbF/LpxH is an
Escherichia coli UDP-2,3-diacylglucosamine hydrolase
thought to catalyze the fourth step of lipid A
biosynthesis, in which a precursor
UDP-2,3-diacylglucosamine is hydrolyzed to yield
2,3-diacylglucosamine 1-phosphate and UMP. YbbF belongs
to the metallophosphatase (MPP) superfamily. MPPs are
functionally diverse, but all share a conserved domain
with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 217
Score = 29.0 bits (65), Expect = 6.1
Identities = 25/135 (18%), Positives = 37/135 (27%), Gaps = 33/135 (24%)
Query: 349 DVH-----GQFHDLMELFKIGGKSPDTNYLF-MGDYVD------RGYYSVETVTLLVALK 396
D+H L+ + + L+ +GD D L L+
Sbjct: 5 DLHLGDGGPAADFLLLFLLAALALGEADALYLLGDIFDLWFGDDEVVPPAAHEVLAALLR 64
Query: 397 VRYRE-RITILRGNHESRQITQVYGFYDECLRKYGNANVWKFFTDLFDYLPLTALVDGQI 455
+ R R+ + GNH D L + L D L L +I
Sbjct: 65 LADRGTRVYYVPGNH------------DFLLGDF--FAEELGLILLPDPLVHLELDGKRI 110
Query: 456 FCLHGGLSPSIDTLD 470
HG D D
Sbjct: 111 LLEHG------DQFD 119
>gnl|CDD|233843 TIGR02390, RNA_pol_rpoA1, DNA-directed RNA polymerase subunit A'.
This family consists of the archaeal A' subunit of the
DNA-directed RNA polymerase. The example from
Methanocaldococcus jannaschii contains an intein.
Length = 867
Score = 29.7 bits (67), Expect = 6.3
Identities = 19/85 (22%), Positives = 40/85 (47%), Gaps = 12/85 (14%)
Query: 8 KELDQWIEQLNECKQLTESQVKTLCDKEIRKAMEVFSLQQRSAKTPEEALQKQYQFWSTQ 67
+E++Q++E++N+ K+ TL +K +++A + + + +K F+ +
Sbjct: 107 EEIEQYLEKINKLKEEGGDLASTLIEKIVKEAAKRMKCPHCGEEQKKIKFEKPTYFY--E 164
Query: 68 PVPKIDEKITTNGPIELDKSPSEIR 92
+ D K+T PSEIR
Sbjct: 165 EGKEGDVKLT----------PSEIR 179
>gnl|CDD|163620 cd00845, MPP_UshA_N_like, Escherichia coli UshA-like family,
N-terminal metallophosphatase domain. This family
includes the bacterial enzyme UshA, and related enzymes
including SoxB, CpdB, YhcR, and CD73. All members have
a similar domain architecture which includes an
N-terminal metallophosphatase domain and a C-terminal
nucleotidase domain. The N-terminal metallophosphatase
domain belongs to a large superfamily of distantly
related metallophosphatases (MPPs) that includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). MPPs are functionally
diverse, but all share a conserved domain with an active
site consisting of two metal ions (usually manganese,
iron, or zinc) coordinated with octahedral geometry by a
cage of histidine, aspartate, and asparagine residues.
The conserved domain is a double beta-sheet sandwich
with a di-metal active site made up of residues located
at the C-terminal side of the sheets. This domain is
thought to allow for productive metal coordination.
Length = 252
Score = 28.8 bits (65), Expect = 7.5
Identities = 23/78 (29%), Positives = 30/78 (38%), Gaps = 20/78 (25%)
Query: 349 DVHGQFHD---------LMELFK-IGGKSPDTNYLFMGDYVDRGYYSVET-----VTLLV 393
D+HG F L L K ++ +T L GD D S T + L+
Sbjct: 8 DLHGHFEPAGGVGGAARLATLIKEERAENENTLLLDAGDNFDGSPPSTATKGEANIELMN 67
Query: 394 ALKVRYRERITILRGNHE 411
AL +TI GNHE
Sbjct: 68 ALGYDA---VTI--GNHE 80
>gnl|CDD|220751 pfam10433, MMS1_N, Mono-functional DNA-alkylating methyl
methanesulfonate N-term. MMS1 is a protein that
protects against replication-dependent DNA damage in
Saccharomyces cerevisiae. MMS1 belongs to the DDB1
family of cullin 4 adaptors and the two proteins are
homologous. MMS1 bridges the interaction of MMS22 and
Crt10 with Cul8/Rtt101. Cul8/Rtt101 is a cullin protein
involved in the regulation of DNA replication subsequent
to DNA damage. The N-terminal region of MMS1 and the
C-terminal of MMS22 are required for the the MMS1-MMS22
interaction. The human HIV-1 virion-associated protein
Vpr assembles with DDB1 through interaction with DCAF1
(chromatin assembly factor) to form an E3 ubiquitin
ligase that targets cellular substrates for
proteasome-mediated degradation and subsequent G2
arrest.
Length = 513
Score = 29.2 bits (66), Expect = 7.6
Identities = 11/36 (30%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 296 LAPIFSEEEFKHWFLPR-DGIVYTFVVENDGEITEI 330
E+ L R DG +Y + NDGE+ I
Sbjct: 220 DRNWSYNEKHDDILLAREDGRIYYLEISNDGEVESI 255
>gnl|CDD|225197 COG2315, MmcQ, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 118
Score = 27.7 bits (62), Expect = 7.9
Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 9/50 (18%)
Query: 86 KSPSEI----RAEPYSLPPGF-----QWDTLNLDDPLVLEELYKLLNENY 126
K E R + + P + W ++ LD + EELY L+ ++Y
Sbjct: 51 KCSPEKFELLRQQQPGIRPAYHMNKKHWISVYLDGSVPDEELYDLIEQSY 100
>gnl|CDD|212036 cd10326, SLC5sbd_NIS-like, Na(+)/iodide (NIS) and
Na(+)/multivitamin (SMVT) cotransporters, and related
proteins; solute binding domain. NIS (product of the
SLC5A5 gene) transports I-, and other anions including
ClO4-, SCN-, and Br-. SMVT (product of the SLC5A6 gene)
transports biotin, pantothenic acid and lipoate. This
subfamily also includes SMCT1 and 2. SMCT1(the product
of the SLC5A8 gene) is a high-affinity transporter of
various monocarboxylates including lactate and pyruvate,
short-chain fatty acids, ketone bodies, nicotinate and
its structural analogs, pyroglutamate, benzoate and its
derivatives, and iodide. SMCT2 (product of the SLC5A12
gene) is a low-affinity transporter for short-chain
fatty acids, lactate, pyruvate, and nicotinate. This
subfamily belongs to the solute carrier 5 (SLC5)
transporter family.
Length = 477
Score = 29.0 bits (66), Expect = 8.0
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 151 SKSNVLVAFISAIPATLSIYGVSQKMVEINFLC 183
S+ FI I T+++ G+ Q MV+ N C
Sbjct: 227 SRHTFWKQFIGGIFITIAMTGLDQDMVQRNLSC 259
>gnl|CDD|237739 PRK14510, PRK14510, putative bifunctional
4-alpha-glucanotransferase/glycogen debranching enzyme;
Provisional.
Length = 1221
Score = 29.1 bits (65), Expect = 9.3
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 469 LDHIRALDRLQEVPHEGPMCDLLW 492
+DH+R L+RL EVP + +
Sbjct: 1026 IDHVRGLERLFEVPQGASAKEGAY 1049
>gnl|CDD|131187 TIGR02132, phaR_Bmeg, polyhydroxyalkanoic acid synthase, PhaR
subunit. This model describes a protein, PhaR,
localized to polyhydroxyalkanoic acid (PHA) inclusion
granules in Bacillus cereus and related species. PhaR is
required for PHA biosynthesis along with PhaC and may be
a regulatory subunit.
Length = 189
Score = 28.3 bits (62), Expect = 9.5
Identities = 18/71 (25%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Query: 25 ESQVKTLCDKEIRKAMEVFSLQQRSAKTPEEALQKQYQFWSTQPVPKIDEKITTNGPIEL 84
+ +K+L DK++ K +E+ QQ++ +E +QKQ + Q ++ EK
Sbjct: 120 KQDIKSL-DKKLDKILELLEGQQKTQDELKETIQKQIKTQGEQLQAQLLEK--QEALAAK 176
Query: 85 DKSPSEIRAEP 95
K+ ++ A+P
Sbjct: 177 LKAEAKEEAKP 187
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.138 0.431
Gapped
Lambda K H
0.267 0.0780 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 30,488,283
Number of extensions: 3014808
Number of successful extensions: 2719
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2667
Number of HSP's successfully gapped: 52
Length of query: 586
Length of database: 10,937,602
Length adjustment: 102
Effective length of query: 484
Effective length of database: 6,413,494
Effective search space: 3104131096
Effective search space used: 3104131096
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (27.6 bits)