RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14920
(586 letters)
>2ie4_C PP2A-alpha;, serine/threonine-protein phosphatase 2A catalytic
subunit alpha isoform; protein-protein complex, heat
repeat, signaling protein; HET: OKA; 2.60A {Homo
sapiens} SCOP: d.159.1.3 PDB: 2npp_C* 3dw8_C* 3k7v_C*
3k7w_C* 3c5w_C 2ie3_C* 3fga_C* 2iae_C* 3p71_C* 2nym_C*
2nyl_C*
Length = 309
Score = 537 bits (1385), Expect = 0.0
Identities = 244/256 (95%), Positives = 249/256 (97%)
Query: 329 EILAKESNVQEVKCPVTVCGDVHGQFHDLMELFKIGGKSPDTNYLFMGDYVDRGYYSVET 388
EIL KESNVQEV+CPVTVCGDVHGQFHDLMELF+IGGKSPDTNYLFMGDYVDRGYYSVET
Sbjct: 37 EILTKESNVQEVRCPVTVCGDVHGQFHDLMELFRIGGKSPDTNYLFMGDYVDRGYYSVET 96
Query: 389 VTLLVALKVRYRERITILRGNHESRQITQVYGFYDECLRKYGNANVWKFFTDLFDYLPLT 448
VTLLVALKVRYRERITILRGNHESRQITQVYGFYDECLRKYGNANVWK+FTDLFDYLPLT
Sbjct: 97 VTLLVALKVRYRERITILRGNHESRQITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLT 156
Query: 449 ALVDGQIFCLHGGLSPSIDTLDHIRALDRLQEVPHEGPMCDLLWSDPDDRGGWGISPRGA 508
ALVDGQIFCLHGGLSPSIDTLDHIRALDRLQEVPHEGPMCDLLWSDPDDRGGWGISPRGA
Sbjct: 157 ALVDGQIFCLHGGLSPSIDTLDHIRALDRLQEVPHEGPMCDLLWSDPDDRGGWGISPRGA 216
Query: 509 GYTFGQDISETFNHSNGLTLVSRAHQLVMEGYNWCHDRNVVTIFSAPNYCYRCGNQAAIM 568
GYTFGQDISETFNH+NGLTLVSRAHQLVMEGYNWCHDRNVVTIFSAPNYCYRCGNQAAIM
Sbjct: 217 GYTFGQDISETFNHANGLTLVSRAHQLVMEGYNWCHDRNVVTIFSAPNYCYRCGNQAAIM 276
Query: 569 ELDDGLKYSLPLGNPC 584
ELDD LKYS +P
Sbjct: 277 ELDDTLKYSFLQFDPA 292
Score = 54.5 bits (132), Expect = 3e-08
Identities = 29/46 (63%), Positives = 36/46 (78%), Gaps = 4/46 (8%)
Query: 1 MEEKAALKELDQWIEQLNECKQLTESQVKTLCDKEIRKAMEVFSLQ 46
M+EK KELDQWIEQLNECKQL+ESQVK+LC+ KA E+ + +
Sbjct: 1 MDEKVFTKELDQWIEQLNECKQLSESQVKSLCE----KAKEILTKE 42
>3icf_A PPT, serine/threonine-protein phosphatase T; IRO metalloprotein,
structural genomics, PSI-2, protein structu initiative;
2.30A {Saccharomyces cerevisiae}
Length = 335
Score = 517 bits (1334), Expect = 0.0
Identities = 96/263 (36%), Positives = 144/263 (54%), Gaps = 9/263 (3%)
Query: 329 EILAKESNVQEVK------CPVTVCGDVHGQFHDLMELFKIGGK-SPDTNYLFMGDYVDR 381
+ +E ++ E++ ++VCGD HGQF+D++ LF+ GK P YLF GD+VDR
Sbjct: 45 TLFRQEPSMVELENNSTPDVKISVCGDTHGQFYDVLNLFRKFGKVGPKHTYLFNGDFVDR 104
Query: 382 GYYSVETVTLLVALKVRYRERITILRGNHESRQITQVYGFYDECLRKYGNANVWKFFTDL 441
G +S E L LK+ + + RGNHES + ++YGF DEC KY + ++ F
Sbjct: 105 GSWSCEVALLFYCLKILHPNNFFLNRGNHESDNMNKIYGFEDECKYKY-SQRIFNMFAQS 163
Query: 442 FDYLPLTALVDGQIFCLHGGL-SPSIDTLDHIRALDRLQEVPHEGPMCDLLWSDPDDRGG 500
F+ LPL L++ +HGGL S TL + +DR + P +G +LLW+DP + G
Sbjct: 164 FESLPLATLINNDYLVMHGGLPSDPSATLSDFKNIDRFAQPPRDGAFMELLWADPQEANG 223
Query: 501 WGISPRGAGYTFGQDISETFNHSNGLTLVSRAHQLVMEGYNWCHDRNVVTIFSAPNYCYR 560
G S RG G+ FG DI++ F +N L + R+H+L M G + ++T+FSAPNYC
Sbjct: 224 MGPSQRGLGHAFGPDITDRFLRNNKLRKIFRSHELRMGGVQFEQKGKLMTVFSAPNYCDS 283
Query: 561 CGNQAAIMELDDGLKYSLPLGNP 583
GN ++ + G N
Sbjct: 284 QGNLGGVIHVVPGHGILQAGRND 306
Score = 34.6 bits (80), Expect = 0.089
Identities = 5/45 (11%), Positives = 16/45 (35%), Gaps = 5/45 (11%)
Query: 3 EKAALKELDQWIEQ-LNECKQLTESQVKTLCDKEIRKAMEVFSLQ 46
+ + + + + + + K L + V + A +F +
Sbjct: 10 KNMSQEFISKMVNDLFLKGKYLPKKYVAAIIS----HADTLFRQE 50
>3h63_A Serine/threonine-protein phosphatase 5; metalloenzyme, inhibitors,
drug design, cytoplasm, hydrolase, iron, manganese,
metal-binding, nucleus; HET: NHC; 1.30A {Homo sapiens}
PDB: 3h60_A* 3h61_A* 3h62_C* 3h64_A* 3h66_A 3h67_A*
3h68_A* 3h69_A* 1s95_A
Length = 315
Score = 513 bits (1323), Expect = 0.0
Identities = 107/253 (42%), Positives = 159/253 (62%), Gaps = 7/253 (2%)
Query: 326 EITEILAKESNVQEVKC----PVTVCGDVHGQFHDLMELFKIGGKSPDTN-YLFMGDYVD 380
++ E+L+K S + E +TVCGD HGQF+DL+ +F++ G +TN Y+F GD+VD
Sbjct: 40 QVKEVLSKLSTLVETTLKETEKITVCGDTHGQFYDLLNIFELNGLPSETNPYIFNGDFVD 99
Query: 381 RGYYSVETVTLLVALKVRYRERITILRGNHESRQITQVYGFYDECLRKYGNANVWKFFTD 440
RG +SVE + L K+ Y + +LRGNHE+ + Q+YGF E KY A +++ F++
Sbjct: 100 RGSFSVEVILTLFGFKLLYPDHFHLLRGNHETDNMNQIYGFEGEVKAKY-TAQMYELFSE 158
Query: 441 LFDYLPLTALVDGQIFCLHGGL-SPSIDTLDHIRALDRLQEVPHEGPMCDLLWSDPDDRG 499
+F++LPL ++G++ +HGGL S TLD IR ++R ++ P GPMCDLLWSDP +
Sbjct: 159 VFEWLPLAQCINGKVLIMHGGLFSEDGVTLDDIRKIERNRQPPDSGPMCDLLWSDPQPQN 218
Query: 500 GWGISPRGAGYTFGQDISETFNHSNGLTLVSRAHQLVMEGYNWCHDRNVVTIFSAPNYCY 559
G IS RG FG D+++ F N L + R+H++ EGY H VT+FSAPNYC
Sbjct: 219 GRSISKRGVSCQFGPDVTKAFLEENNLDYIIRSHEVKAEGYEVAHGGRCVTVFSAPNYCD 278
Query: 560 RCGNQAAIMELDD 572
+ GN+A+ + L
Sbjct: 279 QMGNKASYIHLQG 291
Score = 40.6 bits (96), Expect = 0.001
Identities = 6/45 (13%), Positives = 16/45 (35%), Gaps = 4/45 (8%)
Query: 2 EEKAALKELDQWIEQLNECKQLTESQVKTLCDKEIRKAMEVFSLQ 46
+ K + + + ++ + K+L + + EV S
Sbjct: 8 DGKVTISFMKELMQWYKDQKKLHRKCAYQILV----QVKEVLSKL 48
>1fjm_A Protein serine/threonine phosphatase-1 (alpha ISO 1); hydrolase,
toxin, hydrolase-hydrolase inhibitor complex; HET: 1ZN;
2.10A {Oryctolagus cuniculus} SCOP: d.159.1.3
Length = 330
Score = 513 bits (1323), Expect = 0.0
Identities = 126/257 (49%), Positives = 177/257 (68%), Gaps = 2/257 (0%)
Query: 329 EILAKESNVQEVKCPVTVCGDVHGQFHDLMELFKIGGKSPDTNYLFMGDYVDRGYYSVET 388
EI + + E++ P+ +CGD+HGQ++DL+ LF+ GG P++NYLF+GDYVDRG S+ET
Sbjct: 44 EIFLSQPILLELEAPLKICGDIHGQYYDLLRLFEYGGFPPESNYLFLGDYVDRGKQSLET 103
Query: 389 VTLLVALKVRYRERITILRGNHESRQITQVYGFYDECLRKYGNANVWKFFTDLFDYLPLT 448
+ LL+A K++Y E +LRGNHE I ++YGFYDEC R+Y N +WK FTD F+ LP+
Sbjct: 104 ICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRY-NIKLWKTFTDCFNCLPIA 162
Query: 449 ALVDGQIFCLHGGLSPSIDTLDHIRALDRLQEVPHEGPMCDLLWSDPD-DRGGWGISPRG 507
A+VD +IFC HGGLSP + +++ IR + R +VP +G +CDLLWSDPD D GWG + RG
Sbjct: 163 AIVDEKIFCCHGGLSPDLQSMEQIRRIMRPTDVPDQGLLCDLLWSDPDKDVQGWGENDRG 222
Query: 508 AGYTFGQDISETFNHSNGLTLVSRAHQLVMEGYNWCHDRNVVTIFSAPNYCYRCGNQAAI 567
+TFG ++ F H + L L+ RAHQ+V +GY + R +VT+FSAPNYC N A+
Sbjct: 223 VSFTFGAEVVAKFLHKHDLDLICRAHQVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGAM 282
Query: 568 MELDDGLKYSLPLGNPC 584
M +D+ L S + P
Sbjct: 283 MSVDETLMCSFQILKPA 299
Score = 38.4 bits (90), Expect = 0.005
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 12/45 (26%)
Query: 10 LDQWIEQLNECK--------QLTESQVKTLCDKEIRKAMEVFSLQ 46
LD I +L E + QLTE++++ LC K+ E+F Q
Sbjct: 9 LDSIIGRLLEVQGSRPGKNVQLTENEIRGLCL----KSREIFLSQ 49
>3e7a_A PP-1A, serine/threonine-protein phosphatase PP1-alpha Ca subunit;
carbohydrate metabolism, cell cycle, cell division; HET:
1ZN; 1.63A {Homo sapiens} PDB: 3e7b_A* 3egg_A* 3egh_A*
3hvq_A 3n5u_A 1jk7_A* 1it6_A* 2bcd_A* 2bdx_A* 2o8g_A
2o8a_A 1u32_A* 1s70_A*
Length = 299
Score = 509 bits (1314), Expect = e-180
Identities = 125/250 (50%), Positives = 175/250 (70%), Gaps = 2/250 (0%)
Query: 329 EILAKESNVQEVKCPVTVCGDVHGQFHDLMELFKIGGKSPDTNYLFMGDYVDRGYYSVET 388
EI + + E++ P+ +CGD+HGQ++DL+ LF+ GG P++NYLF+GDYVDRG S+ET
Sbjct: 43 EIFLSQPILLELEAPLKICGDIHGQYYDLLRLFEYGGFPPESNYLFLGDYVDRGKQSLET 102
Query: 389 VTLLVALKVRYRERITILRGNHESRQITQVYGFYDECLRKYGNANVWKFFTDLFDYLPLT 448
+ LL+A K++Y E +LRGNHE I ++YGFYDEC R+Y N +WK FTD F+ LP+
Sbjct: 103 ICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRY-NIKLWKTFTDCFNCLPIA 161
Query: 449 ALVDGQIFCLHGGLSPSIDTLDHIRALDRLQEVPHEGPMCDLLWSDPD-DRGGWGISPRG 507
A+VD +IFC HGGLSP + +++ IR + R +VP +G +CDLLWSDPD D GWG + RG
Sbjct: 162 AIVDEKIFCCHGGLSPDLQSMEQIRRIMRPTDVPDQGLLCDLLWSDPDKDVQGWGENDRG 221
Query: 508 AGYTFGQDISETFNHSNGLTLVSRAHQLVMEGYNWCHDRNVVTIFSAPNYCYRCGNQAAI 567
+TFG ++ F H + L L+ RAHQ+V +GY + R +VT+FSAPNYC N A+
Sbjct: 222 VSFTFGAEVVAKFLHKHDLDLICRAHQVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGAM 281
Query: 568 MELDDGLKYS 577
M +D+ L S
Sbjct: 282 MSVDETLMCS 291
Score = 38.3 bits (90), Expect = 0.004
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 12/45 (26%)
Query: 10 LDQWIEQLNECK--------QLTESQVKTLCDKEIRKAMEVFSLQ 46
LD I +L E + QLTE++++ LC K+ E+F Q
Sbjct: 8 LDSIIGRLLEVQGSRPGKNVQLTENEIRGLCL----KSREIFLSQ 48
>3ll8_A Serine/threonine-protein phosphatase 2B catalytic alpha isoform;
protein-peptide docking, protein targeting, AKA
beta-augmentation, calmodulin-binding, membrane,
hydrolase; 2.00A {Homo sapiens} PDB: 2p6b_A 1m63_A*
1tco_A* 1mf8_A* 2jog_A
Length = 357
Score = 506 bits (1306), Expect = e-178
Identities = 116/261 (44%), Positives = 158/261 (60%), Gaps = 15/261 (5%)
Query: 328 TEILAKESNVQEVKCPVTVCGDVHGQFHDLMELFKIGGKSPDTNYLFMGDYVDRGYYSVE 387
IL +E N+ ++ PVTVCGD+HGQF DLM+LF++GG +T YLF+GDYVDRGY+S+E
Sbjct: 56 ASILRQEKNLLDIDAPVTVCGDIHGQFFDLMKLFEVGGSPANTRYLFLGDYVDRGYFSIE 115
Query: 388 TVTLLVALKVRYRERITILRGNHESRQITQVYGFYDECLRKYGNANVWKFFTDLFDYLPL 447
V L ALK+ Y + + +LRGNHE R +T+ + F EC KY + V+ D FD LPL
Sbjct: 116 CVLYLWALKILYPKTLFLLRGNHECRHLTEYFTFKQECKIKY-SERVYDACMDAFDCLPL 174
Query: 448 TALVDGQIFCLHGGLSPSIDTLDHIRALDRLQEVPHEGPMCDLLWSDPDDRGGWGI---- 503
AL++ Q C+HGGLSP I+TLD IR LDR +E P GPMCD+LWSDP + G
Sbjct: 175 AALMNQQFLCVHGGLSPEINTLDDIRKLDRFKEPPAYGPMCDILWSDPLEDFGNEKTQEH 234
Query: 504 ----SPRGAGYTFGQDISETFNHSNGLTLVSRAHQLVMEGYNWCHDR------NVVTIFS 553
+ RG Y + F N L + RAH+ GY +++TIFS
Sbjct: 235 FTHNTVRGCSYFYSYPAVCEFLQHNNLLSILRAHEAQDAGYRMYRKSQTTGFPSLITIFS 294
Query: 554 APNYCYRCGNQAAIMELDDGL 574
APNY N+AA+++ ++ +
Sbjct: 295 APNYLDVYNNKAAVLKYENNV 315
Score = 41.9 bits (99), Expect = 4e-04
Identities = 5/37 (13%), Positives = 12/37 (32%), Gaps = 4/37 (10%)
Query: 10 LDQWIEQLNECKQLTESQVKTLCDKEIRKAMEVFSLQ 46
+D L + +L ES + + + +
Sbjct: 30 VDILKAHLMKEGRLEESVALRIIT----EGASILRQE 62
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein
interactions, TPR, super-helix,; 2.9A {Homo sapiens}
SCOP: a.118.8.1 d.159.1.3
Length = 477
Score = 511 bits (1317), Expect = e-178
Identities = 107/253 (42%), Positives = 159/253 (62%), Gaps = 7/253 (2%)
Query: 326 EITEILAKESNVQEVKC----PVTVCGDVHGQFHDLMELFKIGGKSPDTN-YLFMGDYVD 380
++ E+L+K S + E +TVCGD HGQF+DL+ +F++ G +TN Y+F GD+VD
Sbjct: 193 QVKEVLSKLSTLVETTLKETEKITVCGDTHGQFYDLLNIFELNGLPSETNPYIFNGDFVD 252
Query: 381 RGYYSVETVTLLVALKVRYRERITILRGNHESRQITQVYGFYDECLRKYGNANVWKFFTD 440
RG +SVE + L K+ Y + +LRGNHE+ + Q+YGF E KY A +++ F++
Sbjct: 253 RGSFSVEVILTLFGFKLLYPDHFHLLRGNHETDNMNQIYGFEGEVKAKY-TAQMYELFSE 311
Query: 441 LFDYLPLTALVDGQIFCLHGGL-SPSIDTLDHIRALDRLQEVPHEGPMCDLLWSDPDDRG 499
+F++LPL ++G++ +HGGL S TLD IR ++R ++ P GPMCDLLWSDP +
Sbjct: 312 VFEWLPLAQCINGKVLIMHGGLFSEDGVTLDDIRKIERNRQPPDSGPMCDLLWSDPQPQN 371
Query: 500 GWGISPRGAGYTFGQDISETFNHSNGLTLVSRAHQLVMEGYNWCHDRNVVTIFSAPNYCY 559
G IS RG FG D+++ F N L + R+H++ EGY H VT+FSAPNYC
Sbjct: 372 GRSISKRGVSCQFGPDVTKAFLEENNLDYIIRSHEVKAEGYEVAHGGRCVTVFSAPNYCD 431
Query: 560 RCGNQAAIMELDD 572
+ GN+A+ + L
Sbjct: 432 QMGNKASYIHLQG 444
Score = 39.3 bits (92), Expect = 0.003
Identities = 6/45 (13%), Positives = 16/45 (35%), Gaps = 4/45 (8%)
Query: 2 EEKAALKELDQWIEQLNECKQLTESQVKTLCDKEIRKAMEVFSLQ 46
+ K + + + ++ + K+L + + EV S
Sbjct: 161 DGKVTISFMKELMQWYKDQKKLHRKCAYQILV----QVKEVLSKL 201
>1aui_A Calcineurin, serine/threonine phosphatase 2B; hydrolase,
immunosuppression; 2.10A {Homo sapiens} SCOP: d.159.1.3
Length = 521
Score = 488 bits (1259), Expect = e-168
Identities = 116/261 (44%), Positives = 158/261 (60%), Gaps = 15/261 (5%)
Query: 328 TEILAKESNVQEVKCPVTVCGDVHGQFHDLMELFKIGGKSPDTNYLFMGDYVDRGYYSVE 387
IL +E N+ ++ PVTVCGD+HGQF DLM+LF++GG +T YLF+GDYVDRGY+S+E
Sbjct: 69 ASILRQEKNLLDIDAPVTVCGDIHGQFFDLMKLFEVGGSPANTRYLFLGDYVDRGYFSIE 128
Query: 388 TVTLLVALKVRYRERITILRGNHESRQITQVYGFYDECLRKYGNANVWKFFTDLFDYLPL 447
V L ALK+ Y + + +LRGNHE R +T+ + F EC KY + V+ D FD LPL
Sbjct: 129 CVLYLWALKILYPKTLFLLRGNHECRHLTEYFTFKQECKIKY-SERVYDACMDAFDCLPL 187
Query: 448 TALVDGQIFCLHGGLSPSIDTLDHIRALDRLQEVPHEGPMCDLLWSDPDDRGGWGI---- 503
AL++ Q C+HGGLSP I+TLD IR LDR +E P GPMCD+LWSDP + G
Sbjct: 188 AALMNQQFLCVHGGLSPEINTLDDIRKLDRFKEPPAYGPMCDILWSDPLEDFGNEKTQEH 247
Query: 504 ----SPRGAGYTFGQDISETFNHSNGLTLVSRAHQLVMEGYNWCHDR------NVVTIFS 553
+ RG Y + F N L + RAH+ GY +++TIFS
Sbjct: 248 FTHNTVRGCSYFYSYPAVCEFLQHNNLLSILRAHEAQDAGYRMYRKSQTTGFPSLITIFS 307
Query: 554 APNYCYRCGNQAAIMELDDGL 574
APNY N+AA+++ ++ +
Sbjct: 308 APNYLDVYNNKAAVLKYENNV 328
Score = 42.1 bits (99), Expect = 4e-04
Identities = 5/37 (13%), Positives = 12/37 (32%), Gaps = 4/37 (10%)
Query: 10 LDQWIEQLNECKQLTESQVKTLCDKEIRKAMEVFSLQ 46
+D L + +L ES + + + +
Sbjct: 43 VDILKAHLMKEGRLEESVALRIIT----EGASILRQE 75
>1rxt_A Myristoyl-, glycylpeptide N-tetradecanoyltransferase 1; alpha-beta
structure, unique N-myristoyltransferase fold; 3.00A
{Homo sapiens} SCOP: d.108.1.2 d.108.1.2
Length = 496
Score = 412 bits (1059), Expect = e-139
Identities = 200/311 (64%), Positives = 241/311 (77%), Gaps = 15/311 (4%)
Query: 34 KEIRKAMEVFSLQQRSAKTPEEALQKQYQFWSTQPVPKIDEKITTNGPIELDKSPSEIRA 93
+EI+KA+E+FS+ Q AKT EEA ++ YQFW TQPVPK+ E + T+GP+E DK IR
Sbjct: 90 QEIQKAIELFSVGQGPAKTMEEASKRSYQFWDTQPVPKLGEVVNTHGPVEPDKD--NIRQ 147
Query: 94 EPYSLPPGFQWDTLNLDDPLVLEELYKLLNENYVEDEDSM------------ALQAPGWC 141
EPY+LP GF WD L+L D VL+ELY LLNENYVED+D+M AL+ PGW
Sbjct: 148 EPYTLPQGFTWDALDLGDRGVLKELYTLLNENYVEDDDNMFRFDYSPEFLLWALRPPGWL 207
Query: 142 KEWHCGVRVSKSNVLVAFISAIPATLSIYGVSQKMVEINFLCVHKKLRSKRVAPVLIREI 201
+WHCGVRV S LV FISAIPA + IY +KMVEINFLCVHKKLRSKRVAPVLIREI
Sbjct: 208 PQWHCGVRVVSSRKLVGFISAIPANIHIYDTEKKMVEINFLCVHKKLRSKRVAPVLIREI 267
Query: 202 TRRVNLKGLFQAVYTAGVVLPKPVGTCRYWHRSLNPKKLIEVKFSHLSRNMTMKRTLKLY 261
TRRV+L+G+FQAVYTAGVVLPKPVGTCRYWHRSLNP+KLIEVKFSHLSRNMTM+RT+KLY
Sbjct: 268 TRRVHLEGIFQAVYTAGVVLPKPVGTCRYWHRSLNPRKLIEVKFSHLSRNMTMQRTMKLY 327
Query: 262 GLPETTKVFGFRPLQEADIPKAHKVLCEFFLRFDLAPIFSEEEFKHWFLPRDGIVYTFVV 321
LPET K G RP++ DIP H++L + +F L P+ S+EE +HWF P++ I+ TFVV
Sbjct: 328 RLPETPKTAGLRPMETKDIPVVHQLLTRYLKQFHLTPVMSQEEVEHWFYPQENIIDTFVV 387
Query: 322 EN-DGEITEIL 331
EN +GE+T+ L
Sbjct: 388 ENANGEVTDFL 398
>3iu1_A Glycylpeptide N-tetradecanoyltransferase 1; N-myristoyltransferase,
NMT1, acyltransferase, phosphoprotein, structural
genomics; HET: MYA; 1.42A {Homo sapiens} PDB: 3iu2_A*
3iwe_A* 3jtk_A*
Length = 383
Score = 401 bits (1031), Expect = e-136
Identities = 186/286 (65%), Positives = 221/286 (77%), Gaps = 15/286 (5%)
Query: 59 KQYQFWSTQPVPKIDEKITTNGPIELDKSPSEIRAEPYSLPPGFQWDTLNLDDPLVLEEL 118
+ YQFW TQPVPK+ E + T+GP+E DK IR EPY+LP GF WD L+L D VL+EL
Sbjct: 2 RSYQFWDTQPVPKLGEVVNTHGPVEPDKD--NIRQEPYTLPQGFTWDALDLGDRGVLKEL 59
Query: 119 YKLLNENYVEDEDSM------------ALQAPGWCKEWHCGVRVSKSNVLVAFISAIPAT 166
Y LLNENYVED+D+M AL+ PGW +WHCGVRV S LV FISAIPA
Sbjct: 60 YTLLNENYVEDDDNMFRFDYSPEFLLWALRPPGWLPQWHCGVRVVSSRKLVGFISAIPAN 119
Query: 167 LSIYGVSQKMVEINFLCVHKKLRSKRVAPVLIREITRRVNLKGLFQAVYTAGVVLPKPVG 226
+ IY +KMVEINFLCVHKKLRSKRVAPVLIREITRRV+L+G+FQAVYTAGVVLPKPVG
Sbjct: 120 IHIYDTEKKMVEINFLCVHKKLRSKRVAPVLIREITRRVHLEGIFQAVYTAGVVLPKPVG 179
Query: 227 TCRYWHRSLNPKKLIEVKFSHLSRNMTMKRTLKLYGLPETTKVFGFRPLQEADIPKAHKV 286
TCRYWHRSLNP+KLIEVKFSHLSRNMTM+RT+KLY LPET K G RP++ DIP H++
Sbjct: 180 TCRYWHRSLNPRKLIEVKFSHLSRNMTMQRTMKLYRLPETPKTAGLRPMETKDIPVVHQL 239
Query: 287 LCEFFLRFDLAPIFSEEEFKHWFLPRDGIVYTFVVEN-DGEITEIL 331
L + +F L P+ S+EE +HWF P++ I+ TFVVEN +GE+T+ L
Sbjct: 240 LTRYLKQFHLTPVMSQEEVEHWFYPQENIIDTFVVENANGEVTDFL 285
>4a95_A Glycylpeptide N-tetradecanoyltransferase; malaria; HET: 9MT NHM;
1.55A {Plasmodium vivax}
Length = 384
Score = 393 bits (1012), Expect = e-133
Identities = 130/282 (46%), Positives = 186/282 (65%), Gaps = 14/282 (4%)
Query: 61 YQFWSTQPVPKIDEKITT--NGPIELDKSPSEIRAEPYSLPPGFQWDTLNLDDPLVLEEL 118
Y+FW TQPVPKI+++ N P D ++R + Y LPPG+ W ++ D E+
Sbjct: 2 YKFWYTQPVPKINDEFNESVNEPFISDNKVEDVRKDEYKLPPGYSWYVCDVKDEKDRSEI 61
Query: 119 YKLLNENYVEDEDSM------------ALQAPGWCKEWHCGVRVSKSNVLVAFISAIPAT 166
Y LL +NYVED+D++ AL +P + K WH GV+ SN L+ FISAIP
Sbjct: 62 YTLLTDNYVEDDDNIFRFNYSAEFLLWALTSPNYLKTWHIGVKYDASNKLIGFISAIPTD 121
Query: 167 LSIYGVSQKMVEINFLCVHKKLRSKRVAPVLIREITRRVNLKGLFQAVYTAGVVLPKPVG 226
+ I+ + KM E+NFLCVHK LRSKR+APVLI+EITRR+NL+ ++QA+YTAGV LPKPV
Sbjct: 122 ICIHKRTIKMAEVNFLCVHKTLRSKRLAPVLIKEITRRINLENIWQAIYTAGVYLPKPVS 181
Query: 227 TCRYWHRSLNPKKLIEVKFSHLSRNMTMKRTLKLYGLPETTKVFGFRPLQEADIPKAHKV 286
RY+HRS+N KKLIE+ FS L+ +TM R +KLY + +T + R +++ D+ HK+
Sbjct: 182 DARYYHRSINVKKLIEIGFSSLNSRLTMSRAIKLYRVEDTLNIKNMRLMKKKDVEGVHKL 241
Query: 287 LCEFFLRFDLAPIFSEEEFKHWFLPRDGIVYTFVVENDGEIT 328
L + +F+L +F++EE HWFLP + ++YT+V E +G+I
Sbjct: 242 LGSYLEQFNLYAVFTKEEIAHWFLPIENVIYTYVNEENGKIK 283
>1iic_A Peptide N-myristoyltransferase; HET: MYA; 2.20A {Saccharomyces
cerevisiae} SCOP: d.108.1.2 d.108.1.2 PDB: 1iid_A*
2nmt_A* 2p6e_A* 2p6f_A* 2p6g_A*
Length = 422
Score = 394 bits (1014), Expect = e-133
Identities = 135/289 (46%), Positives = 186/289 (64%), Gaps = 19/289 (6%)
Query: 59 KQYQFWSTQPVPKIDEKITTNGPIELDKSPSEIRAEPYSLPPGFQWDTLNLDDPLVLEEL 118
K ++FW TQPV DEK+ GPI+ K+P +I +P L F+W ++++D+ LE++
Sbjct: 3 KDHKFWRTQPVKDFDEKVVEEGPIDKPKTPEDISDKPLPLLSSFEWCSIDVDNKKQLEDV 62
Query: 119 YKLLNENYVEDEDSM------------ALQAPGWCKEWHCGVRVSKSNVLVAFISAIPAT 166
+ LLNENYVED D+ AL++PGW K+WH GVRV ++ LVAFISAIP T
Sbjct: 63 FVLLNENYVEDRDAGFRFNYTKEFFNWALKSPGWKKDWHIGVRVKETQKLVAFISAIPVT 122
Query: 167 LSIYGVSQKMVEINFLCVHKKLRSKRVAPVLIREITRRVNLKGLFQAVYTAGVVLPKPVG 226
L + G VEINFLCVHK+LRSKR+ PVLI+EITRRVN ++ A+YTAG+VLP PV
Sbjct: 123 LGVRGKQVPSVEINFLCVHKQLRSKRLTPVLIKEITRRVNKCDIWHALYTAGIVLPAPVS 182
Query: 227 TCRYWHRSLNPKKLIEVKFSHLSRNMTMKRTLKLYGLPETTKVFGFRPLQEADIPKAHKV 286
TCRY HR LN KKL EV F+ L T + + LP TK G R L++ DI + ++
Sbjct: 183 TCRYTHRPLNWKKLYEVDFTGLPDGHTEEDMIAENALPAKTKTAGLRKLKKEDIDQVFEL 242
Query: 287 LCEFFLRFDLAPIFSEEEFKHWFLPRDG------IVYTFVVEN-DGEIT 328
+ RF+L IF++EEF+H F+ + +++++VVE DG+IT
Sbjct: 243 FKRYQSRFELIQIFTKEEFEHNFIGEESLPLDKQVIFSYVVEQPDGKIT 291
>2wuu_A N-myristoyltransferase; acyltransferase; HET: NHM; 1.42A
{Leishmania donovani} PDB: 3h5z_A* 4a2z_A* 4a30_A*
4a31_A* 4a32_A* 4a33_A* 2wsa_A*
Length = 421
Score = 380 bits (976), Expect = e-127
Identities = 123/318 (38%), Positives = 184/318 (57%), Gaps = 41/318 (12%)
Query: 55 EALQKQYQFWSTQPVPKIDE---KITTNGPIELDKSPSEIRAEPYSLPPGFQWDTLNLDD 111
+ FWSTQPVP+ ++ KI GP++ K+ ++I EPY + F+W T N++
Sbjct: 6 SNSDAAHAFWSTQPVPQTEDETEKIVFAGPMDEPKTVADIPEEPYPIASTFEWWTPNMEA 65
Query: 112 PLVLEELYKLLNENYVEDEDSM------------ALQAPGWCKEWHCGVRVSKSNVLVAF 159
+ +Y+LL +NYVED+DSM AL P + +WH VR L+AF
Sbjct: 66 ADDIHAIYELLRDNYVEDDDSMFRFNYSEEFLQWALCPPSYIPDWHVAVRRKADKKLLAF 125
Query: 160 ISAIPATLSI---------------------YGVSQKMVEINFLCVHKKLRSKRVAPVLI 198
I+ +P TL + Y + + EINFLCVHK+LR KR+AP+LI
Sbjct: 126 IAGVPVTLRMGTPKYMKVKAQEKGQEEEAAKYDAPRHICEINFLCVHKQLREKRLAPILI 185
Query: 199 REITRRVNLKGLFQAVYTAGVVLPKPVGTCRYWHRSLNPKKLIEVKFSHLSRNMT----- 253
+E+TRRVN ++QAVYTAGV+LP P + +Y+HRSLNP+KL+E++FS +
Sbjct: 186 KEVTRRVNRTNVWQAVYTAGVLLPTPYASGQYFHRSLNPEKLVEIRFSGIPAQYQKFQNP 245
Query: 254 MKRTLKLYGLPETTKVFGFRPLQEADIPKAHKVLCEFFLRFDLAPIFSEEEFKHWFLPRD 313
M + Y LP K G R ++ +D+P+ ++L + FD+ P+FS+ E H+ LPRD
Sbjct: 246 MAMLKRNYQLPNAPKNSGLREMKPSDVPQVRRILMNYLDNFDVGPVFSDAEISHYLLPRD 305
Query: 314 GIVYTFVVENDGEITEIL 331
G+V+T+VVEND ++T+
Sbjct: 306 GVVFTYVVENDKKVTDFF 323
>1iyk_A Myristoyl-COA:protein N-myristoyltransferase; HET: MYA MIM; 2.30A
{Candida albicans} SCOP: d.108.1.2 d.108.1.2 PDB:
1iyl_A* 1nmt_A
Length = 392
Score = 360 bits (924), Expect = e-120
Identities = 126/270 (46%), Positives = 172/270 (63%), Gaps = 20/270 (7%)
Query: 80 GPIELDKSPSEIRAEPYSLPPGFQWDTLNLDDPLVLEELYKLLNENYVEDEDSM------ 133
GPI+ K+P ++ +P L F+W TL++DD L L+ELYKLL +NYVED D+
Sbjct: 2 GPIDKLKTPEDVPNDPLPLISDFEWSTLDIDDNLQLDELYKLLYDNYVEDIDATFRFKYS 61
Query: 134 ------ALQAPGWCKEWHCGVRVSKSNVLVAFISAIPATLSIYGVSQ--KMVEINFLCVH 185
AL+ PGW K+WH GVRV + LVAFI+A P T + ++ VEINFLC+H
Sbjct: 62 HEFFQWALKPPGWRKDWHVGVRVKSTGKLVAFIAATPVTFKLNKSNKVIDSVEINFLCIH 121
Query: 186 KKLRSKRVAPVLIREITRRVNLKGLFQAVYTAGVVLPKPVGTCRYWHRSLNPKKLIEVKF 245
KKLR+KR+APVLI+EITRRVN + ++QA+YT G +LP P+ TCRY HR +N KL +V F
Sbjct: 122 KKLRNKRLAPVLIKEITRRVNKQNIWQALYTGGSILPTPLTTCRYQHRPINWSKLHDVGF 181
Query: 246 SHLSRNMTMKRTLKLYGLPETTKVFGFRPLQEADIPKAHKVLCEFFLRFDLAPIFSEEEF 305
SHL N T + Y LP K+ G RP+ D+ +L ++ RFD+ +F+EEEF
Sbjct: 182 SHLPPNQTKSSMVASYTLPNNPKLKGLRPMTGKDVSTVLSLLYKYQERFDIVQLFTEEEF 241
Query: 306 KHWFLPRDG-----IVYTFVVEN-DGEITE 329
KHW L D +V ++VVE+ +G IT+
Sbjct: 242 KHWMLGHDENSDSNVVKSYVVEDENGIITD 271
>2z72_A Protein-tyrosine-phosphatase; cold-active enzyme, psychrophIle,
hydrolase; 1.10A {Shewanella SP} PDB: 1v73_A 2zbm_A
Length = 342
Score = 99.1 bits (246), Expect = 8e-23
Identities = 49/262 (18%), Positives = 88/262 (33%), Gaps = 37/262 (14%)
Query: 343 PVTVCGDVHGQFHDLMELFKIGG--------KSPDTNYLFMGDYVDRGYYSVETVTLLVA 394
V DVHGQ+ L+ L K + + + GD DRG+ E + +
Sbjct: 72 KVVALSDVHGQYDVLLTLLKKQKIIDSDGNWAFGEGHMVMTGDIFDRGHQVNEVLWFMYQ 131
Query: 395 LKVRYRE---RITILRGNHESRQITQVYGFYDEC------LRKYGNANVWKFFTDLFDYL 445
L + R+ + +L GNHE + + + L ++ T++ +L
Sbjct: 132 LDQQARDAGGMVHLLMGNHEQMVLGGDLRYVHQRYDIATTLINRPYNKLYSADTEIGQWL 191
Query: 446 PL--TALVDGQIFCLHGGLSPS----IDTLDHIRALDRLQEVPHEGPMCDLLWSDPDDRG 499
T + + +HGG+S TLD AL R + L +D
Sbjct: 192 RSKNTIIKINDVLYMHGGISSEWISRELTLDKANALYR----ANVDASKKSLKADDLLNF 247
Query: 500 GWGISP----RGAG-YTFGQDISETFNHSNGLTLVSRAHQLVMEGYNWCHDRNVVTIFSA 554
+ + RG TF + +T + + H E V+ + S+
Sbjct: 248 LFFGNGPTWYRGYFSETFTEAELDTILQHFNVNHIVVGHT-SQERVLGLFHNKVIAVDSS 306
Query: 555 PNYCYRCGNQAAIMELDDGLKY 576
G ++ L++
Sbjct: 307 ---IKV-GKSGELLLLENNRLI 324
>2qjc_A Diadenosine tetraphosphatase, putative; putative diadenosine
tetraphosphatase, monomer, PSI- 2, protein structure
initiative, nysgrc; 2.05A {Trypanosoma brucei}
Length = 262
Score = 64.7 bits (158), Expect = 9e-12
Identities = 34/179 (18%), Positives = 53/179 (29%), Gaps = 26/179 (14%)
Query: 348 GDVHGQFHDLMELFKIGGKSPDTNYL-FMGDYVDRGYYSVETVTLLVALKVRYRERITIL 406
GD+HG L +L + ++ L +GD V++G S V LL L +
Sbjct: 25 GDIHGCRAQLEDLLRAVSFKQGSDTLVAVGDLVNKGPDSFGVVRLLKRLGAYS------V 78
Query: 407 RGNHE----------SRQITQVYGFYDECLRKYGNANVWKFFTDLFDYLPLTALVD-GQI 455
GNH+ ++ L + LP + +
Sbjct: 79 LGNHDAKLLKLVKKLGKKECLKGRDAKSSLAPLAQSIPTDVE-TYLSQLPHIIRIPAHNV 137
Query: 456 FCLHGGLSPSI-------DTLDHIRALDRLQEVPHEGPMCDLLWSDPDDRGGWGISPRG 507
H GL P D + +R L ++ G D W RG
Sbjct: 138 MVAHAGLHPQRPVDRQYEDEVTTMRNLIEKEQEATGGVTLTATEETNDGGKPWASMWRG 196
>2dfj_A Diadenosinetetraphosphatase; helices and strands mixture,
hydrolase; 2.72A {Shigella flexneri 2A}
Length = 280
Score = 64.8 bits (157), Expect = 1e-11
Identities = 31/157 (19%), Positives = 58/157 (36%), Gaps = 10/157 (6%)
Query: 348 GDVHGQFHDLMELFKIGGKSPDTNYL-FMGDYVDRGYYSVETVTLLVALKVRYRERITIL 406
GDVHG + +L+ L +P + L GD V RG S++ + + +L + + ++
Sbjct: 7 GDVHGCYDELIALLHKVEFTPGKDTLWLTGDLVARGPGSLDVLRYVKSL----GDSVRLV 62
Query: 407 RGNHESRQITQVYGFY----DECLRKYGNANVWKFFTDLFDYLPLTALVD-GQIFCLHGG 461
GNH+ + G + L A + PL + + ++ H G
Sbjct: 63 LGNHDLHLLAVFAGISRNKPKDRLTPLLEAPDADELLNWLRRQPLLQIDEEKKLVMAHAG 122
Query: 462 LSPSIDTLDHIRALDRLQEVPHEGPMCDLLWSDPDDR 498
++P D ++ V L + D
Sbjct: 123 ITPQWDLQTAKECARDVEAVLSSDSYPFFLDAMYGDM 159
>1g5b_A Serine/threonine protein phosphatase; bacteriophage lambda, Ser/Thr
protein phosphatase, ppase, manganese, sulfate, viral
protein; 2.15A {Enterobacteria phage lambda} SCOP:
d.159.1.3
Length = 221
Score = 63.7 bits (155), Expect = 1e-11
Identities = 37/186 (19%), Positives = 62/186 (33%), Gaps = 38/186 (20%)
Query: 346 VCGDVHGQFHDLMELF-KIGGKSPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRERIT 404
V GD+HG + +LM IG + + +GD VDRG +VE + L+ R
Sbjct: 17 VVGDLHGCYTNLMNKLDTIGFDNKKDLLISVGDLVDRGAENVECLELITFPWFRA----- 71
Query: 405 ILRGNHESRQITQVYG--FYDECLRKYGN-------------ANVWKFFTDLFDYLPLTA 449
+RGNHE I + + L G + +L + L
Sbjct: 72 -VRGNHEQMMIDGLSERGNVNHWLLNGGGWFFNLDYDKEILAKALAHKADELPLIIELV- 129
Query: 450 LVDGQIFCLHGGLSPSIDTLDHIRALDRLQEVPHEGPMCDLLWSDP---DDRGGWGISPR 506
D + H + + V H+ ++W+ + + G +
Sbjct: 130 SKDKKYVICHADYPF--------DEYEFGKPVDHQ----QVIWNRERISNSQNGIVKEIK 177
Query: 507 GAGYTF 512
GA
Sbjct: 178 GADTFI 183
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 59.9 bits (144), Expect = 2e-09
Identities = 90/604 (14%), Positives = 170/604 (28%), Gaps = 183/604 (30%)
Query: 10 LDQWIEQLNECKQLTESQVKTLCDKEI-------------RKAMEVFSLQQRSA--KTPE 54
D +++ +CK + + L +EI + +Q K E
Sbjct: 26 EDAFVDNF-DCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVE 84
Query: 55 EALQKQYQFWSTQPVPKIDEKITT--NGPIELDKSPSEIRAEPYSLPPGFQWDTLNLDDP 112
E L+ Y+F + I T P + + E R Y+ F ++ P
Sbjct: 85 EVLRINYKF--------LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQP 136
Query: 113 -LVLEE-LYKLLNENYVEDEDSMALQA-PGWCKEWHCGVRVSKSNVLVAFISAIPATLSI 169
L L + L +L V + G G K+ +
Sbjct: 137 YLKLRQALLELRPAKNV------LIDGVLG------SG----KT-WVAL------DVCLS 173
Query: 170 YGVSQKMVE----INF---------------LCVHKKL----RSKRVAPVLIREITRRVN 206
Y V KM +N L RS + + +R + +
Sbjct: 174 YKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE 233
Query: 207 LKGLFQA------------VYTAGVVLP-----KPVGTCRYWH--RSLNPKKLIEVKFSH 247
L+ L ++ V A K + T R+ L+ + H
Sbjct: 234 LRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDH 293
Query: 248 LSRNMTMKRTLKLYG---------LP-ETTKVFGFRPLQEADIPKAHKVLCEFFLRFD-- 295
S +T L LP E P + + I ++ + + +D
Sbjct: 294 HSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN---PRRLSIIAESIR---DGLATWDNW 347
Query: 296 -------LAPIFS-------EEEFKHWF-----LPRD--------GIVYTFVVENDGE-I 327
L I E++ F P +++ V+++D +
Sbjct: 348 KHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVV 407
Query: 328 TEILAKESNVQ---------------EVKCPVTVCGDVHGQFHD---LMELFKIGGKSPD 369
L K S V+ E+K + +H D + + F P
Sbjct: 408 VNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPP 467
Query: 370 T--NYLFMGDYVDRGYYSVETVTLLVALKVRYRERITILRGNHESRQITQVYGFYDECLR 427
Y + ++ G++ + + ER+T+ R + + F ++ +R
Sbjct: 468 YLDQYFY--SHI--GHH---------LKNIEHPERMTLF------RMVFLDFRFLEQKIR 508
Query: 428 KYGNANVWKFFTDLFDYLPLTALVDGQIFCLHGGLSPSIDTLDHIRALDRLQEVPHEGPM 487
A W + + L I ++ + L +++E
Sbjct: 509 HDSTA--WNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDF--LPKIEENLICSKY 564
Query: 488 CDLL 491
DLL
Sbjct: 565 TDLL 568
Score = 42.9 bits (100), Expect = 3e-04
Identities = 29/159 (18%), Positives = 58/159 (36%), Gaps = 31/159 (19%)
Query: 5 AALKE----LDQWIEQLNECKQLT---ESQVKTLCDKEIRKAMEVFSLQQRSAKTPEEAL 57
++++ D W + +N C +LT ES + L E RK + S+ SA P L
Sbjct: 335 ESIRDGLATWDNW-KHVN-CDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILL 392
Query: 58 QKQYQFWSTQPVPKIDEKITTNGPIEL-DKSPSEIRAEP--YSLPPGFQWDTLNLDDPLV 114
W + + +L S E + + S+P + + L++
Sbjct: 393 SL---IWF-DVIKSDVMVVVN----KLHKYSLVEKQPKESTISIPSIYLELKVKLEN--- 441
Query: 115 LEELYKLLNENY-----VEDEDSMALQAPG-WCKEWHCG 147
L++ + ++Y + +D + + H G
Sbjct: 442 EYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFY--SHIG 478
Score = 39.5 bits (91), Expect = 0.003
Identities = 46/295 (15%), Positives = 87/295 (29%), Gaps = 71/295 (24%)
Query: 286 VLCEFFLR-FD-------LAPIFSEEEFKHWFLPRDGIVYTFVVENDGEITEILAKESNV 337
V + F+ FD I S+EE H + +D + T + +L+K+ +
Sbjct: 24 VFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRL-----FWTLLSKQEEM 78
Query: 338 QEVKCPVTVCGDVHGQFHD-LMELFKIGGKSPDTNYLFMGDYVDRGYYSVETVTLLVALK 396
+ +V + LM K + P + DR Y + +
Sbjct: 79 VQK-----FVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ---VFAKYN 130
Query: 397 VRYRERITILRG---NHESRQITQVY---GFYDECLRKYGNANVWKFFTDLFDYLPLTAL 450
V + LR + + G + +V Y +
Sbjct: 131 VSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWV----ALDV------CLSYKVQCKM 180
Query: 451 VDGQIFCLHGGLSPSIDTLDHIRALDRLQEVPHEGPMCDLLWSDPDDRGGWGISPRGAGY 510
D +IF L+ S +T+ L+ LQ+ + + + R + +
Sbjct: 181 -DFKIFWLNLKNCNSPETV-----LEMLQK------LLYQIDPNWTSRSDHSSNIK---- 224
Query: 511 TFGQDISETFNHSNGLTLVSRAHQ---LVMEGYN-WCHDRNVVTIFSAPNYCYRC 561
I L L S+ ++ LV+ N + F+ C
Sbjct: 225 ---LRIHSIQAELRRL-LKSKPYENCLLVLL--NVQ--NAKAWNAFN-----LSC 266
Score = 31.7 bits (71), Expect = 0.72
Identities = 68/524 (12%), Positives = 134/524 (25%), Gaps = 148/524 (28%)
Query: 112 PLVLEELYKLLNENYVEDEDSMALQAPGWCKE-WHCGVRVSKSNVLVAFISAIPATLSIY 170
+ + + V+D L VS + L + + +
Sbjct: 23 SVFEDAFVDNFDCKDVQDMPKSILSKEE-IDHIIMSKDAVSGTLRLFWTLLSKQE--EMV 79
Query: 171 GVSQKMVE----INFLCVHKKLRSKRVAPVLIRE--ITRRVNLKGLFQAVYTAGVVLPKP 224
QK VE IN+ + +++++ P ++ I +R L Q V +P
Sbjct: 80 ---QKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQP 136
Query: 225 VGTCRYWHRSLNPKKLIEVKFSHLSRNMTM----KRTLKLYGL--PETTKVFGF------ 272
R L P K + + + K + L + F
Sbjct: 137 YLKLRQALLELRPAKNVLI---D-----GVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN 188
Query: 273 --RPLQEADIPKAHKVLCEFFLRFDLAPIFSEEEFKHWFLPRDGIVYTFVVENDGEITEI 330
+ + + L + + P ++ + + E+ +
Sbjct: 189 LKNCNSPETVLEMLQKLL-----YQIDPNWTSRSDHSSNIKLR------IHSIQAELRRL 237
Query: 331 LAKES---------NVQEVKCPVTVCGDVHGQFHDLMELFKIGGK--------------S 367
L + NVQ K F + K S
Sbjct: 238 LKSKPYENCLLVLLNVQNAKA---------------WNAFNLSCKILLTTRFKQVTDFLS 282
Query: 368 PDTNYLFMGDYVDRGYYSVETVTLLV-ALKVRYRERITILRGNHESRQIT-QVYGFYDEC 425
T D+ E +LL+ L R ++ L E + E
Sbjct: 283 AATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD----LP--REVLTTNPRRLSIIAES 336
Query: 426 LRKYGNANVWKFFTDLFDYLPLTALVDGQIFCLHGGLSPSIDTLDHIRALDRLQE---VP 482
+R W + + + LT +++ + L P+ + L +P
Sbjct: 337 IRD--GLATWDNWKHV-NCDKLTTIIESSLNV----LEPA-EYRKMFDRLSVFPPSAHIP 388
Query: 483 HEGPMCDLLWSDPDDRGGWGISPRGAGYTFGQDISETFNHSNGLTLVSR----------- 531
+ L+W D D+ N + +LV +
Sbjct: 389 -TILLS-LIWFDVIK----------------SDVMVVVNKLHKYSLVEKQPKESTISIPS 430
Query: 532 --------------AHQLVMEGYNW--CHDRNVVTIFSAPNYCY 559
H+ +++ YN D + + Y Y
Sbjct: 431 IYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFY 474
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 54.7 bits (131), Expect = 8e-08
Identities = 101/620 (16%), Positives = 176/620 (28%), Gaps = 245/620 (39%)
Query: 64 WSTQPVPKIDEKITTNGPIELDKS-P-------SEIRAE-PYSLPP---GFQWDTLNLDD 111
+ST+P+ ++G +E P S+++ + LP GF D D+
Sbjct: 4 YSTRPL------TLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAAD----DE 53
Query: 112 PLVLEELY-KLLNENYVEDEDSMALQAPGWCKEWHCGVRVSKSNVLVAFISAIPATLSIY 170
P EL K L YV P ++ +V L F
Sbjct: 54 PTTPAELVGKFLG--YVSSLVE-----PSKVGQFD---QVLNL-CLTEF----------- 91
Query: 171 GVSQKMVEINFLC---VHKKLRSKRVAPVLIREITRRVNLKGLFQAVYTAGVVLPKPVGT 227
E +L +H A +L T V K L + TA ++ +P
Sbjct: 92 -------ENCYLEGNDIHA-----LAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDK 139
Query: 228 CRYWHRSLNPKKLIEVKFSHLSRNMTMKRTLKLYGLPETTKVFG--------FRPLQE-- 277
S L F + +L +FG F L++
Sbjct: 140 ---KSNS----AL----FRAVGEG-----NAQLVA------IFGGQGNTDDYFEELRDLY 177
Query: 278 -------AD-IPKAHKVLCEF-FLRFDLAPIFSEE-EFKHW-----------FL------ 310
D I + + L E D +F++ W +L
Sbjct: 178 QTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPIS 237
Query: 311 -PRDGIV----YTFVVE----NDGEITEILAKESNVQEVKCPVTVCG-DV-------HGQ 353
P G++ Y + GE+ L T +
Sbjct: 238 CPLIGVIQLAHYVVTAKLLGFTPGELRSYL----------KGATGHSQGLVTAVAIAETD 287
Query: 354 ----FHDLME-----LFKIGGKS----PDTNY--LFMGDYVDRGYYSVETV-TLLVALKV 397
F + LF IG + P+T+ + D ++ E V + ++++
Sbjct: 288 SWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENN----EGVPSPMLSISN 343
Query: 398 RYRERI--TILRGNH---ESRQI--------TQV---------YGFYDECLRKY---GNA 432
+E++ + + N +Q+ + YG + LRK
Sbjct: 344 LTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGL-NLTLRKAKAPSGL 402
Query: 433 NVWK--F------FTDLFDYLPLTA------LVD----------GQIFCLHGG-LS-PSI 466
+ + F F++ F LP+ + LV + + P
Sbjct: 403 DQSRIPFSERKLKFSNRF--LPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVY 460
Query: 467 DTLD--HIRALDRLQEVPHEGPMCDLLWSDPDDRGGWGISPRGAGYT----FGQDISETF 520
DT D +R L + + D + P W + + T FG
Sbjct: 461 DTFDGSDLRVLS--GSISER--IVDCIIRLPVK---WETTTQ-FKATHILDFGPG----- 507
Query: 521 NHSNGL-TLVSRAHQLVMEG 539
++GL L R +G
Sbjct: 508 -GASGLGVLTHR----NKDG 522
Score = 42.0 bits (98), Expect = 7e-04
Identities = 60/363 (16%), Positives = 107/363 (29%), Gaps = 137/363 (37%)
Query: 54 EEALQKQYQFWSTQPVPKIDEKITTNGPIELDKSPSEIRAEPYSLPPGF---QWDTLNLD 110
EE L+ YQ T + + I + + + + AE G +W L+
Sbjct: 171 EE-LRDLYQ---TYH-VLVGDLIKFSAETLSELIRTTLDAEKV-FTQGLNILEW----LE 220
Query: 111 DP---------------LVLEELYKLLNENYVEDEDSMALQAPGWCKEWHCGVRVSKSNV 155
+P L + +L + YV + PG + + G +
Sbjct: 221 NPSNTPDKDYLLSIPISCPLIGVIQLAH--YVVTAKLLGFT-PGELRSYLKGATGHSQGL 277
Query: 156 LVA------------------------FI----------SAIPAT--------------- 166
+ A FI +++P +
Sbjct: 278 VTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSP 337
Query: 167 -LSIYGVSQKMVE--INFLCVHKKLRSKRVAPVLIREITRR-VNLKGLFQAVYTAGVVLP 222
LSI ++Q+ V+ +N H K+V L+ + + + G Q++Y
Sbjct: 338 MLSISNLTQEQVQDYVNKTNSHLP-AGKQVEISLV--NGAKNLVVSGPPQSLY------- 387
Query: 223 KPVGTCRYWHRSLNPKKLI--EVKFSHLSRNMTMKRTLKLYG--LPETTKVFGFRP---- 274
G ++ P L + FS +R LK LP + P
Sbjct: 388 ---GLNLTLRKAKAPSGLDQSRIPFS--------ERKLKFSNRFLPVAS------PFHSH 430
Query: 275 -LQEADIPKAHKVLCEFFLRF---DLA-PIFSEEEFKHWFLPRDGIVYTFVVENDGEITE 329
L A +K L + + F D+ P++ DG G I+E
Sbjct: 431 LLVPA-SDLINKDLVKNNVSFNAKDIQIPVYD---------TFDGSDLR---VLSGSISE 477
Query: 330 ILA 332
+
Sbjct: 478 RIV 480
Score = 38.9 bits (90), Expect = 0.005
Identities = 42/276 (15%), Positives = 78/276 (28%), Gaps = 94/276 (34%)
Query: 358 MELFKIGGKSPDTNYLFMGDYVDRGYYSVETVTLLVALKVR-YRERITILRGNHESRQIT 416
M+L+K S ++ + D + +T + V +TI G + ++I
Sbjct: 1633 MDLYK---TSKAAQDVW--NRADN--HFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIR 1685
Query: 417 QVYG--FYDECLRKYGNANVWKFFTDL--------F----DYLPLT-----ALV------ 451
+ Y ++ + G K F ++ F L T AL
Sbjct: 1686 ENYSAMIFETIVD--GKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAA 1743
Query: 452 -----------DGQIFCLH------------GGLSPSIDTLD--HIRALDRLQEVPHEGP 486
F H +S ++ R + VP
Sbjct: 1744 FEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIE-SLVEVVFYRGMTMQVAVPR--- 1799
Query: 487 MCDLLWSDPDDRGGWG---ISPRGAGYTFGQDISETFNHSNGLTLVSRAHQLVME--GYN 541
D R +G I+P +F Q+ + + V + ++E YN
Sbjct: 1800 -------DELGRSNYGMIAINPGRVAASFSQEALQYV-----VERVGKRTGWLVEIVNYN 1847
Query: 542 WCHDRNVVTIFSAPNYCYRC-GNQAAIMELDDGLKY 576
N Y G+ A+ + + L +
Sbjct: 1848 ------------VENQQYVAAGDLRALDTVTNVLNF 1871
Score = 37.0 bits (85), Expect = 0.019
Identities = 46/310 (14%), Positives = 92/310 (29%), Gaps = 124/310 (40%)
Query: 26 SQVKTLCDKEIRK----AMEVFSLQQRSAKTPEEA---LQKQYQFWSTQPVPKIDEKITT 78
SQ + + ++ K A +V+ A + Y F S I
Sbjct: 1626 SQEQGMG-MDLYKTSKAAQDVW----------NRADNHFKDTYGF-SIL-------DIVI 1666
Query: 79 NGPIEL-----DKSPSEIRAEPYSLPPGFQWDTLNLDDPLVLEELYKLLNEN-----YVE 128
N P+ L + IR E YS ++T +D L E+++K +NE+ +
Sbjct: 1667 NNPVNLTIHFGGEKGKRIR-ENYS---AMIFET-IVDGKLKTEKIFKEINEHSTSYTFRS 1721
Query: 129 DED---------------SMALQAPGWC--KEWHCGVRVSKSNV----------LVAFIS 161
++ A + K G+ + + L +
Sbjct: 1722 EKGLLSATQFTQPALTLMEKAA----FEDLKSK--GLIPADATFAGHSLGEYAALASLAD 1775
Query: 162 AIP--ATLSI----------------YGVSQ-KMVEINFLCVHKKLRSKRVAPVLIREIT 202
+ + + + G S M+ IN V + + V + +
Sbjct: 1776 VMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYV-VERVG 1834
Query: 203 RR-------VNLK---------GLFQAVYTAGVVLPKPVGTCRYWHRSLNPKKLIEVKFS 246
+R VN G +A+ T VL + +K +
Sbjct: 1835 KRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVL-----------NFIKLQK---IDII 1880
Query: 247 HLSRNMTMKR 256
L ++++++
Sbjct: 1881 ELQKSLSLEE 1890
Score = 29.6 bits (66), Expect = 3.6
Identities = 41/257 (15%), Positives = 75/257 (29%), Gaps = 90/257 (35%)
Query: 20 CKQL--TESQVK------TLCDKEIRKAMEVFSLQQRSAKTPEEALQK-----QYQFW-- 64
K L T +++ T + + A+ + + E F+
Sbjct: 253 AKLLGFTPGELRSYLKGATGHSQGLVTAV-AIA----ETDSWESFFVSVRKAITVLFFIG 307
Query: 65 --STQ--PV----PKIDEKITTNGPIELDKSP-------------SEIRAEPYSLPPGFQ 103
+ P P I E N E SP + LP G Q
Sbjct: 308 VRCYEAYPNTSLPPSILEDSLENN--EGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQ 365
Query: 104 WD-TL-NLDDPLVL----EELYKLLNENYVEDEDSMALQ---APGWCKEWHCGVRVSKSN 154
+ +L N LV+ + LY L ++ L+ AP + K
Sbjct: 366 VEISLVNGAKNLVVSGPPQSLYGL----------NLTLRKAKAPSGLDQSRIPFSERKLK 415
Query: 155 VLVAF--ISA-------IPATLSIYGVSQKMVEINFLCVHKKLR---------------S 190
F +++ +PA+ I ++ +V+ N K ++ S
Sbjct: 416 FSNRFLPVASPFHSHLLVPASDLI---NKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLS 472
Query: 191 KRVAPVLIREITR-RVN 206
++ ++ I R V
Sbjct: 473 GSISERIVDCIIRLPVK 489
>3rqz_A Metallophosphoesterase; PSI-biology, midwest center for structural
genomics, MCSG, Zn binding, hydrolase; 1.95A
{Sphaerobacter thermophilus}
Length = 246
Score = 45.5 bits (107), Expect = 2e-05
Identities = 27/183 (14%), Positives = 52/183 (28%), Gaps = 14/183 (7%)
Query: 346 VCGDVHGQFHDLMELFKIGGKSPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRERITI 405
+ DVH L + G+ + +GD V G E V L+ R
Sbjct: 8 IISDVHANLVALEAVLSDAGRV--DDIWSLGDIVGYGPRPRECVELV-----RVLAPNIS 60
Query: 406 LRGNHESRQITQVYGFYDECLRKYGNANVWKFFTD----LFDYLPLTALVDGQIFCLHGG 461
+ GNH+ I ++ + ++ + + LP ++DG +HG
Sbjct: 61 VIGNHDWACIGRLSLDEFNPVARFASYWTTMQLQAEHLQYLESLPNR-MIDGDWTVVHGS 119
Query: 462 LSPSID--TLDHIRALDRLQEVPHEGPMCDLLWSDPDDRGGWGISPRGAGYTFGQDISET 519
I + A R +S + ++ +
Sbjct: 120 PRHPIWEYIYNARIAALNFPAFDTPLCFVGHTHVPLYIREDEALSNVAPHHPNDGEVLDV 179
Query: 520 FNH 522
+
Sbjct: 180 SSG 182
>1nnw_A Hypothetical protein; structural genomics, PSI, protein structure
initiative, southeast collaboratory for structural
genomics, secsg; 1.90A {Pyrococcus furiosus} SCOP:
d.159.1.5 PDB: 2gju_A
Length = 252
Score = 43.2 bits (101), Expect = 9e-05
Identities = 25/207 (12%), Positives = 58/207 (28%), Gaps = 28/207 (13%)
Query: 348 GDVHGQFHDL------MELFKIGGKSPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRE 401
++ G L +E + G + Y +G+ V Y E + ++ L +E
Sbjct: 8 ANIAGNLPALTAALSRIEEMREEGYEIEK-YYILGNIVGLFPYPKEVIEVIKDLT--KKE 64
Query: 402 RITILRGNHESRQITQVYGFYDECLRKYGNANVWKFFTDLFDYLPLTALVDGQIFCLHGG 461
+ I+RG ++ + D L L V +
Sbjct: 65 NVKIIRGKYDQ----IIAMSDPHATDPG-----------YIDKLELPGHVKKALKFTWEK 109
Query: 462 LSPSIDTLDHIRALDRLQEVPHEGPMCDLLWSDPDDRGGWGISPRGAGYTFGQDISETFN 521
L + +++R L G ++ P + + + + +
Sbjct: 110 LGH--EGREYLRDLPIYLVDKIGGNEVFGVYGSPINPFDGEVLAEQPTSYYEAIMRPVKD 167
Query: 522 HSNGLTLVSRAHQLVMEGYNWCHDRNV 548
+ + +V+ V +
Sbjct: 168 YE--MLIVASPMYPVDAMTRYGRVVCP 192
>3qfm_A SAPH, putative uncharacterized protein; sandwich fold, asymmetric
AP4A hydrolase, phosphodiesterase, binding, Mn2+
binding, hydrolase; 1.90A {Streptococcus pneumoniae}
PDB: 3qfn_A 3qfo_A*
Length = 270
Score = 41.2 bits (96), Expect = 5e-04
Identities = 13/70 (18%), Positives = 22/70 (31%), Gaps = 5/70 (7%)
Query: 344 VTVCGDVHGQFHDLMELFKIGGKSPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRERI 403
+ + D+HG L + + Y +GD + G + LL
Sbjct: 14 IALLSDIHGNTTALEAVLADARQLGVDEYWLLGDILMPGTGRRRILDLL-----DQLPIT 68
Query: 404 TILRGNHESR 413
+ GN E
Sbjct: 69 ARVLGNWEDS 78
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 39.8 bits (92), Expect = 0.001
Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 10/52 (19%)
Query: 1 MEEKAALKELDQWIEQLNECKQLTESQVKTLCDKEIRKAMEVFSLQQRSAKT 52
EKA K+L++W ++ +E Q+ +++ R A + F QQ A
Sbjct: 112 WREKAK-KDLEEWNQRQSE--QVEKNK------INNRIADKAF-YQQPDADI 153
Score = 29.4 bits (65), Expect = 2.1
Identities = 8/70 (11%), Positives = 31/70 (44%), Gaps = 14/70 (20%)
Query: 2 EEKAALKELDQW-------IEQLNECKQLTESQVKTLCDKEI----RKAMEVFSLQQRSA 50
+E ++++ W +++L+ ++ E + + K++ ++ E + +
Sbjct: 82 QEPESIRK---WREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINN 138
Query: 51 KTPEEALQKQ 60
+ ++A +Q
Sbjct: 139 RIADKAFYQQ 148
>2ozg_A GCN5-related N-acetyltransferase; YP_325469.1, acetyltransfe (GNAT)
family, structural genomics, joint center for struct
genomics, JCSG; HET: COA; 2.00A {Anabaena variabilis}
SCOP: d.106.1.4 d.108.1.10
Length = 396
Score = 38.2 bits (88), Expect = 0.006
Identities = 16/175 (9%), Positives = 49/175 (28%), Gaps = 22/175 (12%)
Query: 156 LVAFISAIPATLSIYGVSQKMVEINFLCVHKKLRSKRVAPVLIREITRRVNLKGL-FQAV 214
+ ++ +P G M I + + + R A LI+ + ++ + + +
Sbjct: 59 VAGGLAILPMGQWWGGQRVPMAGIAAVGIAPEYRGDGAAIALIQHTLQEISEQDIPISVL 118
Query: 215 YTAGVVLPKPVGTCRYWHRSLNPKKLIEVKFSHLSRNMTMKRTLKLYGLPETTKVFGFRP 274
Y A L + G + + + + P
Sbjct: 119 YPATQRLYRKAG------------------YEQAGSSCVW--EIPTDSIQIQHASLPLEP 158
Query: 275 LQEADIPKAHKVLCEFFLRFDLAPIFSEEEFKHWFL-PRDGIVYTFVVENDGEIT 328
+ + P H++ + ++ +Y++++ + +
Sbjct: 159 VVLKNNPIFHELYQQQAQLTHGYLDRHPAIWQGLNRTLDTETLYSYLIGDKDKPQ 213
>2dxq_A AGR_C_4057P, acetyltransferase; structural genomics, PSI-2, protein
struc initiative, midwest center for structural
genomics, MCSG; 1.80A {Agrobacterium tumefaciens str}
Length = 150
Score = 35.1 bits (81), Expect = 0.022
Identities = 8/57 (14%), Positives = 16/57 (28%), Gaps = 3/57 (5%)
Query: 272 FRPLQEADIPKAHKVLCEFFL-RFDLAPIFSEEEFKHWFLPRDGIVYTFVVENDGEI 327
R D+P ++ +L + F + FV +G+
Sbjct: 8 LRAAGPGDLPGLLELYQVLNPSDPELTTQEAGAVFAAML--AQPGLTIFVATENGKP 62
>3n7z_A Acetyltransferase, GNAT family; PSI2, MCSG, structural genomics,
protein structure initiativ midwest center for
structural genomics; 2.75A {Bacillus anthracis}
Length = 388
Score = 35.5 bits (81), Expect = 0.041
Identities = 26/237 (10%), Positives = 62/237 (26%), Gaps = 22/237 (9%)
Query: 115 LEELYKLLNENYVEDEDSMALQAPGWCKEWHCGVRVSKSN-VLVAFISAIPATLSIYGVS 173
E +L + D LQ + V L A + IP + I
Sbjct: 14 FREALRLSEYAFQYKVDEDRLQQQITKMKESHEVYGIMEGENLAAKLHLIPFHIYIGKEK 73
Query: 174 QKMVEINFLCVHKKLRSKRVAPVLIREITRRVNLKGL-FQAVYTAGVVLPKPVGTCRYWH 232
KM + + + + R L++ + + G ++ V + G
Sbjct: 74 FKMGGVAGVATYPEYRRSGYVKELLQHSLQTMKKDGYTVSMLHPFAVSFYRKYG------ 127
Query: 233 RSLNPKKLIEVKFSHLSRNMTMKRTLKLYGLPETTKVFGFRPLQEADIPKAHKVLCEFFL 292
+ + + T + + R +E+ + K+ F
Sbjct: 128 ------------WELCANLLVCHMTKSDLVMKKQVNGTVKRFNKESHPEEVEKLYETFAE 175
Query: 293 RFDLAPIFSEEEFKHWFLPRDGIVYTFVVENDGEITEILAKESNVQEVKCPVTVCGD 349
F + +E+ + + + + + + ++ V
Sbjct: 176 LFSGMLVRNEKWWLQAVYDDLTLAI--YYDENQTAAGYMLYKIENYKMTVEEFVPLH 230
>2i00_A Acetyltransferase, GNAT family; structural genomics, PSI-2,
structure initiative, midwest center for structural
genomic transferase; 2.30A {Enterococcus faecalis} SCOP:
d.106.1.4 d.108.1.10
Length = 406
Score = 35.2 bits (80), Expect = 0.062
Identities = 24/175 (13%), Positives = 56/175 (32%), Gaps = 21/175 (12%)
Query: 156 LVAFISAIPATLSIYGVSQKMVEINFLCVHKKLRSKRVAPVLIREITRRVNLKGLFQAVY 215
L++ I+ P ++I+G KM + + + + + + LI+ + +
Sbjct: 71 LISQIAIYPCEVNIHGALYKMGGVTGVGTYPEYANHGLMKDLIQT---------ALEEMR 121
Query: 216 TAGVVLPKPVGTCRYWHRSLNPKKLIEVKFSHLSRNMTMKRTLKLYGLPETTKVFGFRPL 275
+ ++R + +S ++ ++ LP+T V G
Sbjct: 122 QDKQWISYLFPYNIPYYRRKG--------WEIMSDKLSF--KIRDTQLPKTVPVPGMIER 171
Query: 276 QEADIPKAHKVLCEFFLRFDLAPIFSEEEFKHWFLPR--DGIVYTFVVENDGEIT 328
D P V F + A I S ++ ++ + + E
Sbjct: 172 LAVDHPDVFDVYARFARQNHGALIRSAFNWEEYWRFENEEERTAAVYYGANQEPL 226
>1n71_A AAC(6')-II; aminoglycoside 6'-N-acetyltransferase, antibiotic
resistance, coenzyme A; HET: COA; 1.80A {Enterococcus
faecium} SCOP: d.108.1.1 PDB: 2a4n_A* 1b87_A*
Length = 180
Score = 33.6 bits (76), Expect = 0.092
Identities = 23/104 (22%), Positives = 42/104 (40%), Gaps = 7/104 (6%)
Query: 107 LNLDDPLVLEELYKLLNENYVED-EDSMALQAPGWCKEWHCGVRVSKSNVLVAFISAIPA 165
+ ++P++ ++L LL + E+ DS A + V + LV FI AIP
Sbjct: 6 FDRNNPVLKDQLSDLLRLTWPEEYGDSSAEEVEEMMNPERIAVAAVDQDELVGFIGAIPQ 65
Query: 166 TLSIYGVSQKMVEINFLCVHKKLRSKRVAPVLIREITRRVNLKG 209
E++ L V R ++ L+ + + V +G
Sbjct: 66 Y------GITGWELHPLVVESSRRKNQIGTRLVNYLEKEVASRG 103
>1m4i_A Aminoglycoside 2'-N-acetyltransferase; COA binding motif; HET: COA
KAN PAP; 1.50A {Mycobacterium tuberculosis} SCOP:
d.108.1.1 PDB: 1m4d_A* 1m4g_A* 1m44_A*
Length = 181
Score = 33.1 bits (75), Expect = 0.13
Identities = 12/104 (11%), Positives = 35/104 (33%), Gaps = 8/104 (7%)
Query: 115 LEELYKLLNENYVED--EDSMALQAPGWCKEWHCGVRVSKSNVLVAFISAIPATLSIYGV 172
+++ +++ + D E G + ++A + I L G
Sbjct: 21 RQDIRQMVTGAFAGDFTETDWEHTLGGMH------ALIWHHGAIIAHAAVIQRRLIYRGN 74
Query: 173 SQKMVEINFLCVHKKLRSKRVAPVLIREITRRVNLKGLFQAVYT 216
+ + + + V R +R+ L+ + + + A+ +
Sbjct: 75 ALRCGYVEGVAVRADWRGQRLVSALLDAVEQVMRGAYQLGALSS 118
>3ld2_A SMU.2055, putative acetyltransferase; HET: COA; 2.50A
{Streptococcus mutans}
Length = 197
Score = 33.3 bits (76), Expect = 0.14
Identities = 5/55 (9%), Positives = 17/55 (30%)
Query: 273 RPLQEADIPKAHKVLCEFFLRFDLAPIFSEEEFKHWFLPRDGIVYTFVVENDGEI 327
P+ +DI + ++ + + + + + V + +I
Sbjct: 38 SPMLLSDIEQVVELENKTWSEQNTPVPLPVASKDQIIQKFESNTHFLVAKIKDKI 92
>1sqh_A Hypothetical protein CG14615-PA; structural genomics, PSI, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.00A {Drosophila melanogaster} SCOP:
d.108.1.5
Length = 312
Score = 33.6 bits (76), Expect = 0.15
Identities = 21/170 (12%), Positives = 49/170 (28%), Gaps = 36/170 (21%)
Query: 92 RAEPYSLPPGFQWDTLNLDDPLVLEELYKLLNENYVEDEDSMALQAPGWCKEWHCGVRVS 151
A+ LP F+ L +D ++ + + E + ++ G+ S
Sbjct: 164 CAKVPDLPSEFEIRRLRAEDAAMVHDSWPNKGEGSLTYLQALVRFNKS------LGICRS 217
Query: 152 KSNVLVAFISAIPATLSIYGVSQKMVEINFLCVHKKLRSKRVAPVLIREITRRVNLKGLF 211
+ L+A+I + + + L V K + + +L ++R +
Sbjct: 218 DTGELIAWI-----FQNDFS------GLGMLQVLPKAERRGLGGLLAAAMSREIARGEEI 266
Query: 212 QAVYTAGVVLP--------------KPVGTCRYWHRSLNPKKLIEVKFSH 247
++ + + L P +E H
Sbjct: 267 TLT---AWIVATNWRSEALLKRIGYQKDLVNEWIK--LVPNSSLEHHHHH 311
>2vez_A Putative glucosamine 6-phosphate acetyltransferase;
acyltransferase; HET: ACO G6P; 1.45A {Aspergillus
fumigatus} PDB: 2vxk_A*
Length = 190
Score = 33.0 bits (75), Expect = 0.15
Identities = 11/57 (19%), Positives = 19/57 (33%), Gaps = 1/57 (1%)
Query: 272 FRPLQEADIPKAH-KVLCEFFLRFDLAPIFSEEEFKHWFLPRDGIVYTFVVENDGEI 327
RPL +D + + VL D+ ++ D V + +G I
Sbjct: 50 IRPLCRSDYKRGYLDVLRVLTTVGDINEEQWNSRYEWIRARSDEYYLLVVCDGEGRI 106
>1bo4_A Protein (serratia marcescens aminoglycoside-3-N-
acetyltransferase); eubacterial aminoglyco resistance,
GCN5-related N-acetyltransferase; HET: SPD COA; 2.30A
{Serratia marcescens} SCOP: d.108.1.1
Length = 168
Score = 32.9 bits (75), Expect = 0.15
Identities = 6/59 (10%), Positives = 14/59 (23%), Gaps = 5/59 (8%)
Query: 273 RPLQEADIPKAHKVLCEFFLRFDLAPIFSE----EEFKHWFLPRDGIVYTFVVENDGEI 327
L + L F F +S+ ++ L + + +
Sbjct: 30 CRLGPDQVKSMRAALDLFGREFGDVATYSQHQPDSDYLGNLLRSKTFIA-LAAFDQEAV 87
>3mgd_A Predicted acetyltransferase; structural genomics, PSI-2, protein
structure initiative, no structural genomics consortium,
NESG; HET: ACO; 1.90A {Clostridium acetobutylicum}
Length = 157
Score = 32.4 bits (74), Expect = 0.20
Identities = 9/59 (15%), Positives = 24/59 (40%), Gaps = 3/59 (5%)
Query: 272 FRPLQEADIPKAHKVLCEFFLRFDLAP-IFSEEEFKHWFLPR--DGIVYTFVVENDGEI 327
+R DI + + + P I ++E +F + + ++ ++ E + +I
Sbjct: 4 YRKADMKDISLLVSIRKRQLIDEGIEPNIDIDKELTRYFNNKLANNLLVEWIAEENNQI 62
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.2 bits (72), Expect = 0.22
Identities = 13/63 (20%), Positives = 19/63 (30%), Gaps = 35/63 (55%)
Query: 116 EELYKLLNENYVEDEDSMALQAPGWCKEWHCGVRVSKSNVLVAFISAIPATLSIYGVSQK 175
+ L KL + S+ L A SA PA L+I +
Sbjct: 20 QALKKL--------QASLKLYADD---------------------SA-PA-LAI----KA 44
Query: 176 MVE 178
+E
Sbjct: 45 TME 47
Score = 28.4 bits (62), Expect = 4.5
Identities = 6/28 (21%), Positives = 12/28 (42%), Gaps = 4/28 (14%)
Query: 253 TMKR---TLKLYGLPETTKVFGFRPLQE 277
+K+ +LKLY ++ + E
Sbjct: 21 ALKKLQASLKLYA-DDSAPALAIKATME 47
Score = 28.0 bits (61), Expect = 5.4
Identities = 11/44 (25%), Positives = 16/44 (36%), Gaps = 19/44 (43%)
Query: 3 EKAALKELDQWIEQLNECKQLTESQVKTLCDKE-----IRKAME 41
EK ALK+L ++ +K D I+ ME
Sbjct: 18 EKQALKKL--------------QASLKLYADDSAPALAIKATME 47
>3d3s_A L-2,4-diaminobutyric acid acetyltransferase; alpha-beta-alpha
sandwich, structural genomics, PSI-2, prote structure
initiative; HET: MSE; 1.87A {Bordetella parapertussis
12822}
Length = 189
Score = 32.5 bits (74), Expect = 0.23
Identities = 21/128 (16%), Positives = 45/128 (35%), Gaps = 10/128 (7%)
Query: 86 KSPSEIRAEPYSLPPGFQWDTLNLDDPLV--LEELYKLLNENYVEDEDSMALQAPGWCKE 143
K + + S+ +L P +++L++E D +S+ C+
Sbjct: 6 KDETSNTSPDISVAQPASALRYHLRPPRRNDGAAIHQLVSECPPLDLNSLYAYLL-LCEH 64
Query: 144 W--HCGVRVSKSNVLVAFISAIPATLSIYGVSQKMVEINFLCVHKKLRSKRVAPVLIREI 201
C V S + F+SA + ++ + + VH + R R+ ++ I
Sbjct: 65 HAHTCVVAESPGGRIDGFVSA-----YLLPTRPDVLFVWQVAVHSRARGHRLGRAMLGHI 119
Query: 202 TRRVNLKG 209
R +
Sbjct: 120 LERQECRH 127
>2q0y_A GCN5-related N-acetyltransferase; YP_295895.1, acetyltransferase
(GNAT) family, structural genomics, joint center for ST
genomics; HET: MSE; 1.80A {Ralstonia eutropha JMP134}
Length = 153
Score = 31.7 bits (72), Expect = 0.28
Identities = 15/61 (24%), Positives = 24/61 (39%), Gaps = 5/61 (8%)
Query: 272 FRPLQEADIPKAHKVLCEFFLRFDLAPIFS---EEEFKHWFLPR--DGIVYTFVVENDGE 326
RPL D+ + F + ++ F+ W LPR DG + +V+E G
Sbjct: 4 CRPLCIDDLELVCRHREAMFREAGRDALTLAAMQDPFRDWLLPRLADGSYFGWVMEEGGA 63
Query: 327 I 327
Sbjct: 64 P 64
>2o28_A Glucosamine 6-phosphate N-acetyltransferase; structural genomics,
structural genomics consortium, SGC; HET: 16G COA; 1.80A
{Homo sapiens} PDB: 2huz_A* 3cxq_A* 3cxs_A 3cxp_A
Length = 184
Score = 32.2 bits (73), Expect = 0.29
Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 7/60 (11%)
Query: 272 FRPLQEADIPKAHKVLCEFFLRFDLAPIFSEEEFKHWF--LPRDGIVYTFVVEN--DGEI 327
RPL AD+ + + L + S E+F F + + G Y VVE+ G+I
Sbjct: 41 LRPLCTADLNRGFFKVLG-QLTE--TGVVSPEQFMKSFEHMKKSGDYYVTVVEDVTLGQI 97
>3exn_A Probable acetyltransferase; GCN5-related N-acetyltransferase, MCSG,
P structural genomics, protein structure initiative;
HET: ACO; 1.80A {Thermus thermophilus}
Length = 160
Score = 31.6 bits (72), Expect = 0.36
Identities = 10/60 (16%), Positives = 18/60 (30%), Gaps = 4/60 (6%)
Query: 272 FRPLQEADIPKAHKVLCEF--FLRFDLAPIFSEEEFKHWF--LPRDGIVYTFVVENDGEI 327
P+ D P H+V + + + E+ L D F++ E
Sbjct: 14 LAPVTPKDAPLLHRVFHLSPSYFALIGMELPTLEDVVRDLQTLEVDPRRRAFLLFLGQEP 73
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding,
aminoacyl-tRNA synthetase, LIG nucleotide-binding,
protein biosynthesis; 2.80A {Trypanosoma brucei}
Length = 395
Score = 32.6 bits (74), Expect = 0.38
Identities = 9/70 (12%), Positives = 20/70 (28%), Gaps = 4/70 (5%)
Query: 248 LSRNMTMKRTLKLYGLPETTKV--FGFRPLQEADI--PKAHKVLCEFFLRFDLAPIFSEE 303
+ R T + +G + F +Q A + + +
Sbjct: 174 IERAFTASQVRGCFGFAMEDNCGRWMFPAIQAAPSFSAAFPHIFPPSMGNVFCLIPQAID 233
Query: 304 EFKHWFLPRD 313
+ ++ L RD
Sbjct: 234 QDPYFRLTRD 243
>1kux_A Aralkylamine, serotonin N-acetyltransferase; enzyme-inhibitor
complex, bisubstrate analog, alternate conformations;
HET: CA3; 1.80A {Ovis aries} SCOP: d.108.1.1 PDB:
1kuv_A* 1kuy_A* 1l0c_A* 1ib1_E*
Length = 207
Score = 31.5 bits (71), Expect = 0.48
Identities = 10/58 (17%), Positives = 20/58 (34%), Gaps = 6/58 (10%)
Query: 272 FRPLQEADIPKAHKVLCEFFLRFDLAPIFSEEEFKHWFL--PRDGIVYTFVVENDGEI 327
FR L D ++ E F+ + +E +H+ P + +G +
Sbjct: 37 FRCLTPEDAAGVFEIEREAFISVSGNCPLNLDEVQHFLTLCPE----LSLGWFVEGRL 90
>1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; 2.10A {Thermus
thermophilus} SCOP: d.159.1.6
Length = 228
Score = 31.3 bits (70), Expect = 0.60
Identities = 13/106 (12%), Positives = 30/106 (28%), Gaps = 3/106 (2%)
Query: 346 VCGDVHGQFHDLMELFKIGGK-SPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRERIT 404
+ G L + K+ D +G+ + + S + L +
Sbjct: 10 ATSNPMGDLEALEKFVKLAPDTGADA-IALIGNLMPKAAKSRDYAAFFRILSEAHLPTAY 68
Query: 405 ILRGNHESRQITQVYGFYDECLRKYGNANVWKFFTDLFDYLPLTAL 450
+ G ++ + + L NV + FT + +
Sbjct: 69 VP-GPQDAPIWEYLREAANVELVHPEMRNVHETFTFWRGPYLVAGV 113
>3tt2_A GCN5-related N-acetyltransferase; structural genomics, PSI-biology,
midwest center for structu genomics, MCSG, alpha-beta
sandwich; HET: MES; 2.73A {Sphaerobacter thermophilus}
Length = 330
Score = 31.3 bits (70), Expect = 0.90
Identities = 34/252 (13%), Positives = 69/252 (27%), Gaps = 35/252 (13%)
Query: 95 PYSLPPGFQWDTLNLDDPLVLEELYKLLNENYVED-------EDSMALQAPGWCKEWHCG 147
+LP F D + +L+ D + + G
Sbjct: 6 ARTLPDRFIARAPVPAD---APAIARLIAACQEADGDEPDASAEEVLRDWEGLDLGQEAV 62
Query: 148 VRVSKSNVLVAFISAIPATLSIYGVSQKMVEINFLCVHKKLRSKRVAPVLIREITRRVNL 207
+ V+ A+ A + Q V VH + R + L++
Sbjct: 63 LVVAPDGEAAAY-----ADVLNRRYVQLSVY---GYVHPRFRGMGLGTWLVQWGEEW--- 111
Query: 208 KGLFQAVYTAGVVLPKPVGTCRYWHRSLNP--KKLIEVKFSHLSRN-MTMKRTLKLYG-- 262
+ + T +++ R+ + +L+E R+ M TL
Sbjct: 112 -----IQDRMHLAPAEAQVTVQHYIRASSTSALRLMEQHGYRPVRDIWVMAITLDQPPPA 166
Query: 263 --LPETTKVFGFRPLQEADIPKAHKVLCEFFLRFDLAPIFSEEEFKHWFLPRDGIVYTFV 320
PE F P D ++ + E F P + E + ++
Sbjct: 167 PEWPEGITARTFVP--GLDERATYEAVEEAFGDIWGRPPSTFERWLSMTQSERKDPELWL 224
Query: 321 VENDGEITEILA 332
+ + + I+
Sbjct: 225 LAVETDSGHIVG 236
>2hv2_A Hypothetical protein; PSI, protein structure initiative, midwest
center for struct genomics, MCSG, structural genomics,
unknown function; HET: EPE PG4; 2.40A {Enterococcus
faecalis} SCOP: d.106.1.4 d.108.1.10
Length = 400
Score = 31.2 bits (70), Expect = 0.91
Identities = 11/103 (10%), Positives = 39/103 (37%)
Query: 115 LEELYKLLNENYVEDEDSMALQAPGWCKEWHCGVRVSKSNVLVAFISAIPATLSIYGVSQ 174
++E++ L+ + ++ + + L + + A P ++ +GV
Sbjct: 17 MKEMFDLVIYAFNQEPTAERQERFEKLLSHTQSYGFLIDEQLTSQVMATPFQVNFHGVRY 76
Query: 175 KMVEINFLCVHKKLRSKRVAPVLIREITRRVNLKGLFQAVYTA 217
M I ++ + + R + +++E+ + + + +
Sbjct: 77 PMAGIGYVASYPEYRGEGGISAIMKEMLADLAKQKVALSYLAP 119
>3t90_A Glucose-6-phosphate acetyltransferase 1; GNAT fold, glcnac
biosynthesis, alpha/beta protein; HET: EPE; 1.50A
{Arabidopsis thaliana}
Length = 149
Score = 30.1 bits (68), Expect = 1.1
Identities = 13/67 (19%), Positives = 26/67 (38%), Gaps = 5/67 (7%)
Query: 263 LPETTKVFGFRPLQEADIPKAH-KVLCEFFLRFDLAPIFSEEEFKHWF-LPRDGIVYTFV 320
+ ET F R L+ +D K ++L + + + + F+ D ++
Sbjct: 1 MAET---FKIRKLEISDKRKGFIELLGQLTVTGSVTDEEFDRRFEEIRSYGDDHVICVIE 57
Query: 321 VENDGEI 327
E G+I
Sbjct: 58 EETSGKI 64
>3te4_A GH12636P, dopamine N acetyltransferase, isoform A; dopamine/acetyl
COA, N-acetyltransferase domain; HET: ACO; 1.46A
{Drosophila melanogaster}
Length = 215
Score = 30.5 bits (68), Expect = 1.1
Identities = 11/63 (17%), Positives = 22/63 (34%), Gaps = 5/63 (7%)
Query: 270 FGFRPLQEADIPKAHKVLCEFFLRFD----LAPIFSEEEFKHWFLPRDGIVYTFV-VEND 324
+ +Q D +L FF + + + +E + + L ++ V
Sbjct: 7 YTIELIQPEDGEAVIAMLKTFFFKDEPLNTFLDLGECKELEKYSLKPLPDNCSYKAVNKK 66
Query: 325 GEI 327
GEI
Sbjct: 67 GEI 69
>2r7h_A Putative D-alanine N-acetyltransferase of GNAT FA; putative
acetyltransferase of the GNAT family; 1.85A
{Desulfovibrio desulfuricans subsp}
Length = 177
Score = 30.1 bits (68), Expect = 1.1
Identities = 10/65 (15%), Positives = 18/65 (27%), Gaps = 1/65 (1%)
Query: 264 PETTKVFGFRPLQEADIPKAHKVLCEFFLRFDLAPIFSEEEFKHWFLPRDGIVYTFVV-E 322
P V R + D +V+ ++E + Y FV
Sbjct: 15 PAAGAVAFRRQVLPQDALLVRRVVESTGFFTPEEADVAQELVDEHLMHGAACGYHFVFAT 74
Query: 323 NDGEI 327
D ++
Sbjct: 75 EDDDM 79
>1aoa_A T-fimbrin; actin-binding protein, calcium-binding, phosphorylation;
2.40A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1
Length = 275
Score = 30.7 bits (69), Expect = 1.2
Identities = 8/62 (12%), Positives = 18/62 (29%), Gaps = 4/62 (6%)
Query: 424 ECLRKYGNANVWKFFTDLFDYLPLTALVD----GQIFCLHGGLSPSIDTLDHIRALDRLQ 479
L G + F D+ D L++ + ++ + L R +
Sbjct: 179 FHLENSGWQKINNFSADIKDSKAYFHLLNQIAPKGQKEGEPRIDINMSGFNETDDLKRAE 238
Query: 480 EV 481
+
Sbjct: 239 SM 240
>1yr0_A AGR_C_1654P, phosphinothricin acetyltransferase; structural
genomics, protein structure initiative, NYSGXRC, PSI;
2.00A {Agrobacterium tumefaciens str} SCOP: d.108.1.1
Length = 175
Score = 29.5 bits (67), Expect = 1.8
Identities = 11/61 (18%), Positives = 19/61 (31%), Gaps = 8/61 (13%)
Query: 273 RPLQEADIPK-----AHKVLCEFFLRFDLAPIFSEEEFKHWFLPRDGIVY-TFVVENDGE 326
R D+ V+ ++ + E K WF R + V DG+
Sbjct: 8 RDATVDDLSGIMEIYNDAVV-NTTAIWNEVVV-DLENRKDWFAARTSRGFPVIVAILDGK 65
Query: 327 I 327
+
Sbjct: 66 V 66
>3dr6_A YNCA; acetyltransferase, csgid target, essential gene, IDP00086,
structural genomics, center for STRU genomics of
infectious diseases; HET: MSE; 1.75A {Salmonella
typhimurium} PDB: 3dr8_A*
Length = 174
Score = 29.5 bits (67), Expect = 1.9
Identities = 12/61 (19%), Positives = 21/61 (34%), Gaps = 8/61 (13%)
Query: 273 RPLQEADIPK-----AHKVLCEFFLRFDLAPIFSEEEFKHWFLPRDGIVY-TFVVENDGE 326
R +AD H VL ++ + + W+ R + Y V E +G
Sbjct: 7 RFADKADCAAITEIYNHAVL-HTAAIWNDRTV-DTDNRLAWYEARQLLGYPVLVSEENGV 64
Query: 327 I 327
+
Sbjct: 65 V 65
>4ag7_A Glucosamine-6-phosphate N-acetyltransferase; HET: COA; 1.55A
{Caenorhabditis elegans} PDB: 4ag9_A*
Length = 165
Score = 29.5 bits (66), Expect = 2.0
Identities = 10/58 (17%), Positives = 21/58 (36%), Gaps = 2/58 (3%)
Query: 272 FRPLQEADIPKAH-KVLCEFFLRFDLAPIFSEEEFKHWF-LPRDGIVYTFVVENDGEI 327
RPL + D K + +L + +L E+ F+ + + N ++
Sbjct: 24 VRPLAKDDFSKGYVDLLSQLTSVGNLDQEAFEKRFEAMRTSVPNYHIVVIEDSNSQKV 81
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural
genomics, PSI-2, Pro structure initiative; 1.68A
{Caenorhabditis elegans}
Length = 109
Score = 28.5 bits (64), Expect = 2.2
Identities = 9/46 (19%), Positives = 19/46 (41%), Gaps = 6/46 (13%)
Query: 34 KEIRKAMEVFS-LQQRSA-----KTPEEALQKQYQFWSTQPVPKID 73
+ I A E + ++ P++ YQ++ + PK+D
Sbjct: 63 RVIATAYETLKDDEAKTNYDYYLDHPDQRFYNYYQYYRLRAAPKVD 108
>4fd4_A Arylalkylamine N-acetyltransferase like 5B; GNAT; 1.95A {Aedes
aegypti}
Length = 217
Score = 29.8 bits (66), Expect = 2.2
Identities = 6/67 (8%), Positives = 16/67 (23%), Gaps = 10/67 (14%)
Query: 270 FGFRPLQEADIPKAHKVLCEFF---------LRFDLAPIFSEEEFKHWFLPRDGIVYTFV 320
R + ++ + ++L + + +E F G V
Sbjct: 7 IVLRVARLDELEQVREILHRIYYPEEGITISYVHGKSHTLDDERF-SLSFVEQGTVVVAE 65
Query: 321 VENDGEI 327
+
Sbjct: 66 DSAAKKF 72
>3oa1_A Phosphoprotein; seattle structural genomics center for infectious
disease, R virus, protein degredation; 2.20A {Rabies
virus strain pasteur vaccin}
Length = 229
Score = 29.5 bits (66), Expect = 2.6
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 65 STQPVPKIDEKITTNGPIELDKSPSEIR--AEPYSLPPGFQWDTLNLDDPLVLE 116
STQ + +K TT P + + S+ R A+ S PP +W N +D L +E
Sbjct: 77 STQTTGRELKKETTPTPSQRESQSSKARMAAQTASGPPALEWSATNEEDDLSVE 130
>2bue_A AAC(6')-IB; GNAT, transferase, aminoglycoside, fluoroquinolone,
acetyltransferase, antibiotic resistance; HET: COA RIO;
1.7A {Escherichia coli} PDB: 1v0c_A* 2vqy_A* 2prb_A*
2qir_A* 2pr8_A*
Length = 202
Score = 29.4 bits (66), Expect = 2.7
Identities = 9/69 (13%), Positives = 23/69 (33%), Gaps = 6/69 (8%)
Query: 264 PETTKVFGFRPLQEADIPKAHKVL-CEFFLRF--DLAPIFSEEEFKHWFLPR---DGIVY 317
+ R + E D+ ++ L + + + + + +LP V
Sbjct: 20 TNSNDSVTLRLMTEHDLAMLYEWLNRSHIVEWWGGEEARPTLADVQEQYLPSVLAQESVT 79
Query: 318 TFVVENDGE 326
++ +GE
Sbjct: 80 PYIAMLNGE 88
>3i3g_A N-acetyltransferase; malaria, structural genomics, structural
genomics consortium, SGC,; 1.86A {Trypanosoma brucei}
PDB: 3fb3_A
Length = 161
Score = 28.5 bits (64), Expect = 3.9
Identities = 9/56 (16%), Positives = 17/56 (30%), Gaps = 1/56 (1%)
Query: 272 FRPLQEADIPKAHKVLCEFFLRFDLAPIFSEEEFKHWFLPRDGIVYTFVVENDGEI 327
R L+E+D+ ++L L+ + F + G I
Sbjct: 23 LRVLEESDLSSHLELLGHLTEAPPLSGVELANIADMRRRAGIV-TKVFCHQPTGRI 77
>2fe7_A Probable N-acetyltransferase; structural genomics, pseudomonas
aerugi PSI, protein structure initiative; 2.00A
{Pseudomonas aeruginosa ucbpp-pa14} SCOP: d.108.1.1
Length = 166
Score = 28.5 bits (64), Expect = 4.0
Identities = 10/83 (12%), Positives = 22/83 (26%), Gaps = 18/83 (21%)
Query: 247 HLSRNMTMKRTLKLYGLPETTKVFGFRPLQEADIPKAHKVLCE--FFLRFDLAPIFSEEE 304
+ +MT++ RP AD + + E + R + E
Sbjct: 4 YFQGHMTLE----------------IRPAVPADAEQILAFIIELADYERARHEVVTDVEG 47
Query: 305 FKHWFLPRDGIVYTFVVENDGEI 327
+ + ++G
Sbjct: 48 IRRSLFAEGSPTRALMCLSEGRP 70
>3f5b_A Aminoglycoside N(6')acetyltransferase; APC60744, legionella
pneumophila subsp. pneumophila, structural genomics,
PSI-2; HET: MSE; 2.00A {Legionella pneumophila subsp}
Length = 182
Score = 28.7 bits (64), Expect = 4.0
Identities = 4/61 (6%), Positives = 19/61 (31%), Gaps = 5/61 (8%)
Query: 270 FGFRPLQEADIPKAHKVLCE----FFLRFDLAPIFSEEEFKHWFLPRDGIVYTFVVENDG 325
F F+ + ++ + + +L D + ++ + ++ ++
Sbjct: 15 FCFKQMNKSQHELVLGWIHQPHINEWLHGD-GLSNTIKDLHEFLNDGKPWATHWIAYDNE 73
Query: 326 E 326
Sbjct: 74 I 74
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 29.5 bits (66), Expect = 4.1
Identities = 14/93 (15%), Positives = 27/93 (29%), Gaps = 10/93 (10%)
Query: 271 GFRP----LQEADIPKAHKVLCEFFLRFDLAPIFSEEEFKHWFLPRDGIVYTFVVENDGE 326
G R L P+ +++ E + DL P + +E F + G + E
Sbjct: 903 GIRLIEPELFNGYNPEKKEMIQEVIVEEDLEPFEASKETAEQFKHQHG-DKVDIFEIPET 961
Query: 327 ITEILAKESNVQEV-----KCPVTVCGDVHGQF 354
+ + V G + +
Sbjct: 962 GEYSVKLLKGATLYIPKALRFDRLVAGQIPTGW 994
>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta,
oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus}
PDB: 3ggg_D* 3ggp_A*
Length = 314
Score = 29.2 bits (66), Expect = 4.1
Identities = 8/44 (18%), Positives = 20/44 (45%), Gaps = 6/44 (13%)
Query: 4 KAALKELDQWIEQLNECKQLTESQ-VKTLCD-----KEIRKAME 41
+ +K ++ + + LN K+L + + L + K R ++
Sbjct: 271 ENVMKAIEGFEKSLNHLKELIVREAEEELVEYLKEVKIKRMEID 314
>3eo4_A Uncharacterized protein MJ1062;
APC60792.2,MJ_1062,methanocaldococcus jannaschii DSM
2661, S genomics, PSI-2; HET: MES PG6; 2.19A
{Methanocaldococcus jannaschii}
Length = 164
Score = 28.4 bits (64), Expect = 4.6
Identities = 11/84 (13%), Positives = 29/84 (34%), Gaps = 11/84 (13%)
Query: 251 NMTMKRTLKLYGLPETTKVFGFRPLQEADIPKAHKVLCEFFLR---FDLAPIFSEEEFKH 307
N K+ E +K+ R + + D+ + + EE
Sbjct: 2 NANCKKIG------EDSKII-IRQITDNDLELLMAWRSNPLIYKFFYIQKEPLKWEEHYS 54
Query: 308 WFLPR-DGIVYTFVVENDGEITEI 330
W++ R + + + ++ + I ++
Sbjct: 55 WWMSRENRVDWIILLRENNTIRKV 78
>2cb5_A Protein (bleomycin hydrolase); aminopeptidase, cysteine protease,
SELF- compartmentalizing, cylinase; 1.85A {Homo sapiens}
SCOP: d.3.1.1 PDB: 1cb5_A
Length = 453
Score = 29.0 bits (64), Expect = 4.7
Identities = 15/76 (19%), Positives = 25/76 (32%), Gaps = 1/76 (1%)
Query: 355 HDLMELFKIGGKSPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRERITILRGNHESRQ 414
M+ I +YLF D V+R Y+ + K R+ + +
Sbjct: 83 LPFMKKLNIEEFEFSQSYLFFWDKVERCYFFLSAFVDTAQRKEPEDGRLVQFLLMNPAND 142
Query: 415 ITQVYGFYDECLRKYG 430
Q + + KYG
Sbjct: 143 GGQWDMLVN-IVEKYG 157
>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate,
oxidative decarboxylation pathway, tyrosine
biosynthesis, oxidoreduct; HET: NAD; 2.10A
{Streptococcus mutans} PDB: 3dzb_A
Length = 290
Score = 28.7 bits (65), Expect = 4.8
Identities = 10/44 (22%), Positives = 23/44 (52%), Gaps = 6/44 (13%)
Query: 4 KAALKELDQWIEQLNECKQLTESQ-VKTLCD-----KEIRKAME 41
+A L ++ + ++L+E L +++ + ++IRK ME
Sbjct: 247 EAVLDRIENFKQRLDEVSNLIKARDENAIWAFFNQSRQIRKNME 290
>1rk6_A D-aminoacylase; TIM barrel, beta barrel, insertion, hydrolase;
1.43A {Alcaligenes faecalis} SCOP: b.92.1.6 b.92.1.6
c.1.9.11 PDB: 1rjp_A 1v51_A 1rjq_A 1rjr_A 1rk5_A 1v4y_A
1m7j_A
Length = 496
Score = 28.8 bits (64), Expect = 5.4
Identities = 12/43 (27%), Positives = 15/43 (34%), Gaps = 4/43 (9%)
Query: 294 FDLAPIFSEEEFKHWFLPRDGIVYTFV----VENDGEITEILA 332
FD A + F+H GI +V V D T A
Sbjct: 445 FDPATVADSATFEHPTERAAGIHSVYVNGAAVWEDQSFTGQHA 487
>1wwz_A Hypothetical protein PH1933; structural genomics, pyrococcus
horikoshii OT3, riken struct genomics/proteomics
initiative, RSGI; HET: ACO; 1.75A {Pyrococcus
horikoshii} SCOP: d.108.1.1
Length = 159
Score = 27.8 bits (62), Expect = 5.5
Identities = 6/58 (10%), Positives = 18/58 (31%), Gaps = 4/58 (6%)
Query: 273 RPLQEADIPKAHKVLCEFFLRFDLAPIFSEE---EFKHWFLPRDGIVYTFVVENDGEI 327
+ L + + + V + + + + W + + FV + +I
Sbjct: 10 KKLDKKALNELIDVYMSGYEGLEEYGGEGRDYARNYIKWCWKKASDGF-FVAKVGDKI 66
>2ae6_A Acetyltransferase, GNAT family; GCN5-related N-acetyltransferase
(GNAT), alpha-beta, structu genomics, PSI, protein
structure initiative; HET: GOL; 2.19A {Enterococcus
faecalis} SCOP: d.108.1.1
Length = 166
Score = 27.6 bits (62), Expect = 6.6
Identities = 10/59 (16%), Positives = 22/59 (37%), Gaps = 9/59 (15%)
Query: 273 RPLQEADIPKAHKVLCEFFLR----FDLAPIFSEEEFKHWFLPRDGIVYTFVVENDGEI 327
R + EAD P H + + + ++ P+ S ++ FV + ++
Sbjct: 11 RLVAEADWPALHALDQIIWTKKNTPAEIQPL-SLAAYQEKMKDE----TIFVAISGQQL 64
>3frm_A Uncharacterized conserved protein; APC61048, staphylococcus
epidermidis ATCC structural genomics, PSI-2, protein
structure initiative; HET: MES; 2.32A {Staphylococcus
epidermidis}
Length = 254
Score = 28.0 bits (62), Expect = 6.9
Identities = 13/97 (13%), Positives = 36/97 (37%), Gaps = 3/97 (3%)
Query: 115 LEELYKLLNENYVEDEDSMALQAPGWCKEWHCGVRVSKSNVLVAFISAIPATLSIYGVSQ 174
+ + + + DS A + + LVA+++ P + ++
Sbjct: 129 INDYLHVYDAFARPFGDSYANMVKQHIYSSY---NLDDIERLVAYVNHQPVGIVDIIMTD 185
Query: 175 KMVEINFLCVHKKLRSKRVAPVLIREITRRVNLKGLF 211
K +EI+ V ++ + + + + + R N + +
Sbjct: 186 KTIEIDGFGVLEEFQHQGIGSEIQAYVGRMANERPVI 222
>1mk4_A Hypothetical protein YQJY; alpha-beta-alpha sandwich, structural
genomics, PSI, protein structure initiative; 1.70A
{Bacillus subtilis} SCOP: d.108.1.1
Length = 157
Score = 27.8 bits (62), Expect = 7.1
Identities = 10/56 (17%), Positives = 19/56 (33%), Gaps = 6/56 (10%)
Query: 272 FRPLQEADIPKAHKVLCEFFLRFDLAPIFSEEEFKHWFLPRDGIVYTFVVENDGEI 327
R + +D VL E++ L F+H+ +D F+ +
Sbjct: 4 IRTITSSDYEMVTSVLNEWWGGRQLKEKLPRLFFEHF---QDTS---FITSEHNSM 53
>2i6c_A Putative acetyltransferase; GNAT family, structural genomic,
structur genomics, PSI-2, protein structure initiative;
HET: MSE EPE; 1.30A {Pseudomonas aeruginosa} SCOP:
d.108.1.1 PDB: 3pgp_A*
Length = 160
Score = 27.8 bits (62), Expect = 7.1
Identities = 12/60 (20%), Positives = 21/60 (35%), Gaps = 7/60 (11%)
Query: 272 FRPLQEADIPKAH---KVLCEFFLRFDLAPI-FSEEEFKHWFLPRDGIVYTFVVENDGEI 327
RP + D+ + E F + A FS + R + V +DG++
Sbjct: 5 HRPAETGDLETVAGFPQDRDELFYCYPKAIWPFSVAQLAAAIAERR---GSTVAVHDGQV 61
>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A
{Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6
Length = 281
Score = 27.9 bits (63), Expect = 8.4
Identities = 8/43 (18%), Positives = 19/43 (44%), Gaps = 6/43 (13%)
Query: 4 KAALKELDQWIEQLNECKQLTESQ-VKTLCD-----KEIRKAM 40
+ +K ++ + + LN K+L + + L + K R +
Sbjct: 239 ENVMKAIEGFEKSLNHLKELIVREAEEELVEYLKEVKIKRMEI 281
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor
protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB:
2ios_A 2iol_A
Length = 152
Score = 27.1 bits (60), Expect = 9.1
Identities = 15/62 (24%), Positives = 23/62 (37%), Gaps = 7/62 (11%)
Query: 271 GFRPLQEA------DIPKAHKVLCEFFLRFDLAPIFSEEEFKHWFLPRDGIVYTFVVEND 324
G+ + D+P ++ VL F A I S ++ + R FV E D
Sbjct: 85 GYERIYNEIPDINLDVPHSYSVLERFVEECFQAGIIS-KQLRDLCPSRSRGRKRFVSEGD 143
Query: 325 GE 326
G
Sbjct: 144 GG 145
>3jvn_A Acetyltransferase; alpha-beta protein, structural genomics, PSI-2,
protein STRU initiative, northeast structural genomics
consortium, NESG; 2.61A {Vibrio fischeri}
Length = 166
Score = 27.3 bits (61), Expect = 9.1
Identities = 22/105 (20%), Positives = 44/105 (41%), Gaps = 10/105 (9%)
Query: 110 DDPLVLEELYKLLNENYVEDEDSMALQAPGWCKEW--------HCGVRVSKSN-VLVAFI 160
D + +YKL +E++ + D + ++ C V V++ + V++ FI
Sbjct: 12 DLYCLNSLMYKLHDEHHQQCPDLFKTASEIEEEKSIARYLDDPECMVYVAEMDDVIIGFI 71
Query: 161 SA-IPATLSIYGVSQKMVEINFLCVHKKLRSKRVAPVLIREITRR 204
+ +S M I+ L + K+ R + VA L+ I +
Sbjct: 72 TGHFCELISTVSKLVMMATIDELYIEKEYRREGVAEQLMMRIEQE 116
>2nr7_A Secretion activator protein, putative; APCC85792, porphyromonas
gingivalis W83 structural genomics, PSI-2, protein
structure initiative; 1.30A {Porphyromonas gingivalis}
SCOP: d.2.1.9
Length = 195
Score = 27.5 bits (60), Expect = 9.4
Identities = 16/76 (21%), Positives = 23/76 (30%), Gaps = 13/76 (17%)
Query: 473 RALDRLQEVPHEGPMCDLLWSDPDDRGG---WGISPRGA---GYTFGQDISETFNHSNGL 526
L + + EG DP D GG G++ GY D L
Sbjct: 9 LLLPYILK--WEGGFVH----DPADAGGATNKGVTIATWKRVGYDKDGDGDIDVEDLKLL 62
Query: 527 TLVSRAHQLVMEGYNW 542
T V++ + W
Sbjct: 63 TD-DDVLNRVLKPFYW 77
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.138 0.431
Gapped
Lambda K H
0.267 0.0498 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,347,099
Number of extensions: 576868
Number of successful extensions: 1309
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1244
Number of HSP's successfully gapped: 102
Length of query: 586
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 487
Effective length of database: 3,937,614
Effective search space: 1917618018
Effective search space used: 1917618018
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.4 bits)