Query psy14921
Match_columns 148
No_of_seqs 159 out of 791
Neff 5.6
Searched_HMMs 29240
Date Sat Aug 17 00:22:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14921.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14921hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vtn_C HNF-3/FORK head DNA-rec 100.0 7.3E-46 2.5E-50 268.5 6.8 87 9-95 1-87 (102)
2 2hdc_A Protein (transcription 100.0 5.3E-46 1.8E-50 267.1 2.5 84 10-93 1-84 (97)
3 1kq8_A HFH-1, hepatocyte nucle 100.0 2.9E-45 9.8E-50 264.6 5.2 86 10-95 1-87 (100)
4 2hfh_A Genesis, HFH-2; HNF-3 h 100.0 3.3E-45 1.1E-49 267.8 3.7 84 10-93 2-85 (109)
5 2c6y_A Forkhead box protein K2 100.0 1.6E-45 5.4E-50 270.3 1.2 90 4-93 9-98 (111)
6 3coa_C Forkhead box protein O1 100.0 2.2E-42 7.4E-47 255.7 5.5 86 7-94 7-97 (117)
7 3bpy_A FORK head domain, forkh 100.0 3E-42 1E-46 242.3 5.6 79 8-88 2-85 (85)
8 3l2c_A Forkhead box protein O4 100.0 1.1E-41 3.7E-46 249.6 5.6 84 8-93 21-109 (110)
9 1e17_A AFX; DNA binding domain 100.0 2.8E-41 9.7E-46 258.7 5.0 87 8-96 37-128 (150)
10 2a07_F Forkhead box protein P2 100.0 4.2E-41 1.4E-45 240.0 1.3 77 10-91 2-78 (93)
11 3g73_A Forkhead box protein M1 100.0 8.4E-40 2.9E-44 248.9 6.0 87 5-94 11-99 (142)
12 1uss_A Histone H1; DNA binding 93.7 0.088 3E-06 36.1 4.4 33 15-47 9-42 (88)
13 1uhm_A Histone H1, histone HHO 93.2 0.071 2.4E-06 35.6 3.2 33 15-47 6-39 (78)
14 1hst_A Histone H5; chromosomal 92.9 0.11 3.8E-06 35.8 4.0 32 15-46 9-41 (90)
15 1ust_A Histone H1; DNA binding 91.8 0.13 4.5E-06 35.6 3.2 33 15-47 9-42 (93)
16 2rqp_A Heterochromatin protein 91.3 0.078 2.7E-06 36.2 1.6 35 14-48 10-45 (88)
17 2lso_A Histone H1X; structural 84.4 0.21 7.1E-06 33.9 0.0 34 13-46 5-39 (83)
18 1ghc_A GH1; chromosomal protei 72.6 0.45 1.5E-05 31.1 -1.1 30 15-44 5-35 (75)
19 1jb0_X Photosystem I subunit P 53.4 8.4 0.00029 22.0 2.0 19 7-25 2-23 (35)
20 2kzv_A Uncharacterized protein 48.3 45 0.0015 22.6 5.6 44 13-56 6-51 (92)
21 2kpm_A Uncharacterized protein 48.3 33 0.0011 24.0 5.0 62 15-77 21-85 (105)
22 3rsn_A SET1/ASH2 histone methy 47.0 21 0.00072 27.3 4.1 62 12-73 67-144 (177)
23 1mzb_A Ferric uptake regulatio 42.4 29 0.00099 24.3 4.0 30 19-48 22-51 (136)
24 2fu4_A Ferric uptake regulatio 35.8 30 0.001 21.6 3.0 41 19-65 21-61 (83)
25 3hyh_A Carbon catabolite-derep 31.8 22 0.00074 28.1 2.0 33 15-47 238-272 (275)
26 4aw0_A HPDK1, 3-phosphoinositi 31.4 11 0.00036 30.7 0.1 39 16-57 261-301 (311)
27 3mwm_A ZUR, putative metal upt 30.5 44 0.0015 23.5 3.4 29 19-48 18-46 (139)
28 2o03_A Probable zinc uptake re 29.4 53 0.0018 22.7 3.6 29 19-48 15-43 (131)
29 4hgt_A Casein kinase I isoform 28.8 58 0.002 24.1 3.9 34 13-46 247-280 (296)
30 2w57_A Ferric uptake regulatio 28.6 34 0.0012 24.5 2.5 30 19-48 21-50 (150)
31 2xig_A Ferric uptake regulatio 26.5 71 0.0024 22.7 3.9 29 19-48 31-59 (150)
32 3uzp_A CKI-delta, CKID, casein 25.0 74 0.0025 23.6 3.9 34 13-46 247-280 (296)
33 2i9n_A MHB4A peptide; beta-hai 24.7 65 0.0022 17.7 2.6 24 2-25 8-31 (33)
34 1u46_A ACK-1, activated CDC42 22.4 50 0.0017 24.5 2.5 32 15-46 253-284 (291)
35 2fe3_A Peroxide operon regulat 22.4 88 0.003 22.0 3.7 29 19-48 26-54 (145)
36 3eyy_A Putative iron uptake re 22.3 70 0.0024 22.6 3.2 28 19-48 23-50 (145)
37 1csn_A Casein kinase-1; phosph 22.2 97 0.0033 22.9 4.1 33 14-46 251-283 (298)
38 3dra_B Geranylgeranyltransfera 21.9 69 0.0024 27.1 3.5 33 13-45 95-128 (390)
39 4ets_A Ferric uptake regulatio 20.4 88 0.003 22.6 3.4 28 19-47 37-66 (162)
40 3kfa_A Tyrosine-protein kinase 20.2 44 0.0015 24.8 1.7 32 14-45 239-270 (288)
41 2h6d_A 5'-AMP-activated protei 20.1 62 0.0021 23.8 2.6 34 14-47 236-271 (276)
No 1
>1vtn_C HNF-3/FORK head DNA-recognition motif; protein-DNA complex, double helix, transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens} PDB: 1d5v_A
Probab=100.00 E-value=7.3e-46 Score=268.55 Aligned_cols=87 Identities=54% Similarity=0.903 Sum_probs=83.6
Q ss_pred CCCCCchHHHHHHHHHhhCCCCCcCHHHHHHHHHhhCCCcccccccccccchhhcccccccccccCCCCCCCCcceeeec
Q psy14921 9 NIKCTSSYASLIRLAISNAPQGRMTLNEIYQFITHTFPYYREANAGWKNSIRHNLSLNKCFTKVARPKDDPGKGSYWAID 88 (148)
Q Consensus 9 ~~KPp~SYa~LI~~AI~~sp~~~LtL~eIY~~i~~~fPyyr~~~~gWknSIRHnLS~n~~F~Kv~r~~~~~gkg~~W~id 88 (148)
+.||||||++||+|||+++|+++|||+|||+||+++||||+.+..|||||||||||+|+||+||+|+.+++|||+||+||
T Consensus 1 h~KPp~SY~~LI~~AI~~sp~~~LtL~eIY~~I~~~fpyyr~~~~gWqNSIRHNLSln~~F~kv~r~~~~~GKG~~W~l~ 80 (102)
T 1vtn_C 1 HAKPPYSYISLITMAIQQAPGKMLTLSEIYQWIMDLFPYYRENQQRWQNSIRHSLSFNDCFVKVARSPDKPGKGSYWALH 80 (102)
T ss_dssp CCCCSSCHHHHHHHHHHTSTTSCBCHHHHHHHHHHHCGGGGSCHHHHHHHHHHHHHHCTTEEEECCCSCSSCSSCEEEEC
T ss_pred CcCcCCCHHHHHHHHHHhCCCCCCcHHHHHHHHHHcCCccccCCCchhhhhhhhhhhccceEecCCCCCCCCCcceEEEC
Confidence 58999999999999999999999999999999999999999999999999999999999999999998999999999999
Q ss_pred CCCCCCC
Q psy14921 89 YNHTADD 95 (148)
Q Consensus 89 ~~~~~~~ 95 (148)
+++....
T Consensus 81 p~~~~~f 87 (102)
T 1vtn_C 81 PSSGNMF 87 (102)
T ss_dssp GGGCSTT
T ss_pred cCHHHHh
Confidence 9987633
No 2
>2hdc_A Protein (transcription factor); structure, dyanamics, genesis, winged helix protein, protein/DNA complex; HET: DNA; NMR {Rattus norvegicus} SCOP: a.4.5.14
Probab=100.00 E-value=5.3e-46 Score=267.14 Aligned_cols=84 Identities=50% Similarity=0.959 Sum_probs=81.8
Q ss_pred CCCCchHHHHHHHHHhhCCCCCcCHHHHHHHHHhhCCCcccccccccccchhhcccccccccccCCCCCCCCcceeeecC
Q psy14921 10 IKCTSSYASLIRLAISNAPQGRMTLNEIYQFITHTFPYYREANAGWKNSIRHNLSLNKCFTKVARPKDDPGKGSYWAIDY 89 (148)
Q Consensus 10 ~KPp~SYa~LI~~AI~~sp~~~LtL~eIY~~i~~~fPyyr~~~~gWknSIRHnLS~n~~F~Kv~r~~~~~gkg~~W~id~ 89 (148)
.||||||++||+|||+++|+++|||+|||+||+++||||+.+..|||||||||||+|+||+||+|+.+++|||+||+||+
T Consensus 1 ~KPp~SY~~LI~~AI~~sp~~~ltL~eIY~~i~~~fpyyr~~~~gWqNSIRHNLSln~~F~Kv~r~~~~~gKg~~W~l~p 80 (97)
T 2hdc_A 1 VKPPYSYIALITMAILQSPQKKLTLSGICEFISNRFPYYREKFPAWQNSIRHNLSLNDCFVKIPREPGNPGKGNYWTLDP 80 (97)
T ss_dssp CCCCCCHHHHHHHHHHTCTTTCBCHHHHHHHHHHHCHHHHHHCSSHHHHHHHHHHHHHCCEEECSCTTCSSSCCEEECCT
T ss_pred CcCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHhchhhccCCcceehhhhhhhhhhhheeecCCCCCCCCCcceEEECc
Confidence 59999999999999999999999999999999999999999999999999999999999999999988999999999999
Q ss_pred CCCC
Q psy14921 90 NHTA 93 (148)
Q Consensus 90 ~~~~ 93 (148)
++.+
T Consensus 81 ~~~~ 84 (97)
T 2hdc_A 81 QSED 84 (97)
T ss_dssp THHH
T ss_pred CHHH
Confidence 9875
No 3
>1kq8_A HFH-1, hepatocyte nuclear factor 3 forkhead homolog 1, winged; winged helix protein, structure, transcription; NMR {Rattus norvegicus} SCOP: a.4.5.14
Probab=100.00 E-value=2.9e-45 Score=264.61 Aligned_cols=86 Identities=44% Similarity=0.837 Sum_probs=72.8
Q ss_pred CCCCchHHHHHHHHHhhCCCCCcCHHHHHHHHHhhCCCcccccccccccchhhcccccccccccCCCCCC-CCcceeeec
Q psy14921 10 IKCTSSYASLIRLAISNAPQGRMTLNEIYQFITHTFPYYREANAGWKNSIRHNLSLNKCFTKVARPKDDP-GKGSYWAID 88 (148)
Q Consensus 10 ~KPp~SYa~LI~~AI~~sp~~~LtL~eIY~~i~~~fPyyr~~~~gWknSIRHnLS~n~~F~Kv~r~~~~~-gkg~~W~id 88 (148)
+||||||++||+|||+++|+++|||+|||+||+++||||+.+..|||||||||||+|+||+||+|+.+++ |||+||+||
T Consensus 1 ~KPp~SY~~LI~~AI~~sp~~~ltL~eIY~~i~~~fpyyr~~~~gWqNSIRHNLSln~~F~kv~r~~~~p~gkg~~W~l~ 80 (100)
T 1kq8_A 1 PKPPYSYIALITMAIRDSAGGRLTLAEINEYLMGKFPFFRGSYTGWRNSVRHNLSLNDCFVKVLRDPSRPWGKDNYWMLN 80 (100)
T ss_dssp ------CHHHHHHHHTTSSSSCBCHHHHHHHHHHHCTTGGGTCSCCHHHHHHHHHHHTCCEECSSCSCCSSSCCCCEECC
T ss_pred CcCCCCHHHHHHHHHHhCCCCCCcHHHHHHHHHHhCccccCCCCceecccchheehhheeeecCCCCCCCCCCCeEEEEC
Confidence 5999999999999999999999999999999999999999999999999999999999999999988887 999999999
Q ss_pred CCCCCCC
Q psy14921 89 YNHTADD 95 (148)
Q Consensus 89 ~~~~~~~ 95 (148)
|+++...
T Consensus 81 p~~~~~f 87 (100)
T 1kq8_A 81 PNSEYTF 87 (100)
T ss_dssp C------
T ss_pred cCHHHHH
Confidence 9987643
No 4
>2hfh_A Genesis, HFH-2; HNF-3 homologues, winged helix protein; NMR {Rattus norvegicus} SCOP: a.4.5.14
Probab=100.00 E-value=3.3e-45 Score=267.84 Aligned_cols=84 Identities=50% Similarity=0.959 Sum_probs=82.2
Q ss_pred CCCCchHHHHHHHHHhhCCCCCcCHHHHHHHHHhhCCCcccccccccccchhhcccccccccccCCCCCCCCcceeeecC
Q psy14921 10 IKCTSSYASLIRLAISNAPQGRMTLNEIYQFITHTFPYYREANAGWKNSIRHNLSLNKCFTKVARPKDDPGKGSYWAIDY 89 (148)
Q Consensus 10 ~KPp~SYa~LI~~AI~~sp~~~LtL~eIY~~i~~~fPyyr~~~~gWknSIRHnLS~n~~F~Kv~r~~~~~gkg~~W~id~ 89 (148)
.||||||++||+|||+++|+++|||+|||+||+++||||+.+..|||||||||||+|+||+||+|+.+++|||+||+||+
T Consensus 2 ~KPp~SYa~LI~~AI~~sp~~~LtL~eIY~~I~~~fPyyr~~~~gWqNSIRHNLSln~~F~Kv~r~~~~~GKG~~W~l~p 81 (109)
T 2hfh_A 2 VKPPYSYIALITMAILQSPQKKLTLSGICEFISNRFPYYREKFPAWQNSIRHNLSLNDCFVKIPREPGNPGKGNYWTLDP 81 (109)
T ss_dssp CCCCCCHHHHHHHHHHTCSSSCBCHHHHHHHHHTTCHHHHTTCGGGHHHHHHHHHHHTCCBCCTTCTTSCSSCCCBBCCT
T ss_pred CCCCCCHHHHHHHHHHhCCCCCCcHHHHHHHHHHhcchhccCCcccchhhhhhhhhhhhhhcCCCCCCCCCCceeEEECc
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCC
Q psy14921 90 NHTA 93 (148)
Q Consensus 90 ~~~~ 93 (148)
++.+
T Consensus 82 ~~~~ 85 (109)
T 2hfh_A 82 QSED 85 (109)
T ss_dssp TCCH
T ss_pred cHHH
Confidence 9985
No 5
>2c6y_A Forkhead box protein K2; transcription regulation, DNA-binding domain, forkhead transcription factors, interleukin enhancer binding factor; 2.4A {Homo sapiens} SCOP: a.4.5.14 PDB: 1jxs_A 2a3s_A 2d2w_A
Probab=100.00 E-value=1.6e-45 Score=270.32 Aligned_cols=90 Identities=51% Similarity=0.881 Sum_probs=82.9
Q ss_pred ecCCCCCCCCchHHHHHHHHHhhCCCCCcCHHHHHHHHHhhCCCcccccccccccchhhcccccccccccCCCCCCCCcc
Q psy14921 4 TYKTGNIKCTSSYASLIRLAISNAPQGRMTLNEIYQFITHTFPYYREANAGWKNSIRHNLSLNKCFTKVARPKDDPGKGS 83 (148)
Q Consensus 4 ~y~~~~~KPp~SYa~LI~~AI~~sp~~~LtL~eIY~~i~~~fPyyr~~~~gWknSIRHnLS~n~~F~Kv~r~~~~~gkg~ 83 (148)
...+.+.||||||++||+|||+++|+++|||+|||+||+++||||+.+..|||||||||||+|+||+||+|+.+++|||+
T Consensus 9 ~~~~~~~KPp~SYa~LI~~AI~~sp~~~LtL~eIY~~I~~~fPyyr~~~~gWqNSIRHNLSln~~F~Kv~r~~~~~GKG~ 88 (111)
T 2c6y_A 9 MGRGSDSKPPYSYAQLIVQAITMAPDKQLTLNGIYTHITKNYPYYRTADKGWQNSIRHNLSLNRYFIKVPRSQEEPGKGS 88 (111)
T ss_dssp -----CCCCSSCHHHHHHHHHHTSTTSCEEHHHHHHHHHHHCTTSCTTCHHHHHHHHHHHHHSTTEEEECCCTTSCCSSC
T ss_pred cCCCCCCCCCCCHHHHHHHHHHhCCCCCCcHHHHHHHHHHcCCccccCCCeeecchhHHhhhhhhhccccCCCCCCCCcc
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999988999999
Q ss_pred eeeecCCCCC
Q psy14921 84 YWAIDYNHTA 93 (148)
Q Consensus 84 ~W~id~~~~~ 93 (148)
||+||++++.
T Consensus 89 ~W~l~p~~~~ 98 (111)
T 2c6y_A 89 FWRIDPASES 98 (111)
T ss_dssp EEEECHHHHH
T ss_pred eEEeChhHHH
Confidence 9999998864
No 6
>3coa_C Forkhead box protein O1; winged helix, forkhead domain, chromosomal rearrangement; HET: DNA; 2.20A {Homo sapiens} PDB: 3co7_C* 2k86_A 2uzk_A
Probab=100.00 E-value=2.2e-42 Score=255.70 Aligned_cols=86 Identities=40% Similarity=0.747 Sum_probs=76.9
Q ss_pred CCCCCCCchHHHHHHHHHhhCCCCCcCHHHHHHHHHhhCCCccccc-----ccccccchhhcccccccccccCCCCCCCC
Q psy14921 7 TGNIKCTSSYASLIRLAISNAPQGRMTLNEIYQFITHTFPYYREAN-----AGWKNSIRHNLSLNKCFTKVARPKDDPGK 81 (148)
Q Consensus 7 ~~~~KPp~SYa~LI~~AI~~sp~~~LtL~eIY~~i~~~fPyyr~~~-----~gWknSIRHnLS~n~~F~Kv~r~~~~~gk 81 (148)
..+.||||||++||+|||+++|+++|||+|||+||+++||||+.+. .|||||||||||+|+||+||+| +++||
T Consensus 7 ~~n~kPp~SYa~LI~~AI~~sp~~~LTL~eIY~~I~~~fPyyr~~~d~~s~~gWqNSIRHNLSln~~F~Kv~~--~~~GK 84 (117)
T 3coa_C 7 RRNAWGNLSYADLITKAIESSAEKRLTLSQIYEWMVKSVPYFKDKGDSNSSAGWKNSIRHNLSLHSKFIRVQN--EGTGK 84 (117)
T ss_dssp CCBTTBSCCHHHHHHHHHHTSTTSCBCHHHHHHHHHHHCGGGTTCCSHHHHHHHHHHHHHHHHHCTTEEEECC--SSTTC
T ss_pred CCCCCCCCCHHHHHHHHHHhCCCCCccHHHHHHHHHHhCcccccCCCCcccccchhccchheecchhhccccc--CCCCC
Confidence 4588999999999999999999999999999999999999999864 7999999999999999999997 46899
Q ss_pred cceeeecCCCCCC
Q psy14921 82 GSYWAIDYNHTAD 94 (148)
Q Consensus 82 g~~W~id~~~~~~ 94 (148)
|+||+||+++...
T Consensus 85 g~~W~l~p~~~~~ 97 (117)
T 3coa_C 85 SSWWMLNPEGGKS 97 (117)
T ss_dssp CCEEEECC-----
T ss_pred cceEEECcccccc
Confidence 9999999998754
No 7
>3bpy_A FORK head domain, forkhead transcription factor FOXO4, DNA binding domain; forkhead BOX, winged helix; 1.87A {Homo sapiens}
Probab=100.00 E-value=3e-42 Score=242.30 Aligned_cols=79 Identities=48% Similarity=0.879 Sum_probs=74.6
Q ss_pred CCCCCCchHHHHHHHHHhhCCCCCcCHHHHHHHHHhhCCCcccc-----cccccccchhhcccccccccccCCCCCCCCc
Q psy14921 8 GNIKCTSSYASLIRLAISNAPQGRMTLNEIYQFITHTFPYYREA-----NAGWKNSIRHNLSLNKCFTKVARPKDDPGKG 82 (148)
Q Consensus 8 ~~~KPp~SYa~LI~~AI~~sp~~~LtL~eIY~~i~~~fPyyr~~-----~~gWknSIRHnLS~n~~F~Kv~r~~~~~gkg 82 (148)
.+.||||||++||+|||+++|+++|||+|||+||+++||||+.+ ..|||||||||||+|+||+||+| +++|||
T Consensus 2 rn~kp~~SY~~LI~~Ai~~sp~~~ltL~eIY~~i~~~fpyy~~~~~~~s~~gWqNSIRHNLSln~~F~Kv~r--~~~GKg 79 (85)
T 3bpy_A 2 RNAWGNQSYAELISQAIESAPEKRLTLAQIYEWMVRTVPYFKDKGDSNSSAGWKNSIRHNLSLHSKFIKVHN--EATGKS 79 (85)
T ss_dssp CBTTBSCCHHHHHHHHHHHSTTSCBCHHHHHHHHHHHCGGGTTCTTCCTTSHHHHHHHHHHHHCTTEEEECC--CSTTCC
T ss_pred CCCcCCCCHHHHHHHHHHhCCcCCccHHHHHHHHHHhCcchhcCccCccCCCcchhhhhhccHhhhheeCCC--CCCCCC
Confidence 47899999999999999999999999999999999999999975 46999999999999999999997 468999
Q ss_pred ceeeec
Q psy14921 83 SYWAID 88 (148)
Q Consensus 83 ~~W~id 88 (148)
+||+||
T Consensus 80 ~~W~ld 85 (85)
T 3bpy_A 80 SWWMLN 85 (85)
T ss_dssp CEEEEC
T ss_pred CceecC
Confidence 999997
No 8
>3l2c_A Forkhead box protein O4; winged helix, transcription-DNA COMP; 1.87A {Homo sapiens} SCOP: a.4.5.14 PDB: 3co6_C*
Probab=100.00 E-value=1.1e-41 Score=249.62 Aligned_cols=84 Identities=45% Similarity=0.806 Sum_probs=75.0
Q ss_pred CCCCCCchHHHHHHHHHhhCCCCCcCHHHHHHHHHhhCCCcccc-----cccccccchhhcccccccccccCCCCCCCCc
Q psy14921 8 GNIKCTSSYASLIRLAISNAPQGRMTLNEIYQFITHTFPYYREA-----NAGWKNSIRHNLSLNKCFTKVARPKDDPGKG 82 (148)
Q Consensus 8 ~~~KPp~SYa~LI~~AI~~sp~~~LtL~eIY~~i~~~fPyyr~~-----~~gWknSIRHnLS~n~~F~Kv~r~~~~~gkg 82 (148)
.+.||||||++||+|||+++|+++|||+|||+||+++||||+.+ ..|||||||||||+|+||+||+| +++|||
T Consensus 21 ~~~kPpySY~~LI~~AI~~sp~~~LtL~eIY~~I~~~fPyyr~~~~~~s~~gWqNSIRHNLSln~~F~Kv~r--~~~GKG 98 (110)
T 3l2c_A 21 RNAWGNQSYAELISQAIESAPEKRLTLAQIYEWMVRTVPYFKDKGDSNSSAGWKNSIRHNLSLHSKFIKVHN--EATGKS 98 (110)
T ss_dssp CBTTBSCCHHHHHHHHHHHSTTSCBCHHHHHHHHHHHCGGGTTCTTCCTTSHHHHHHHHHHHHCTTEEEECC--CSTTCC
T ss_pred CCCCCCCCHHHHHHHHHHhCCccCcCHHHHHHHHHHhCchhhcCccccCCCCcccchhhhccHhhhheeCCC--CCCCCC
Confidence 47899999999999999999999999999999999999999975 57999999999999999999997 468999
Q ss_pred ceeeecCCCCC
Q psy14921 83 SYWAIDYNHTA 93 (148)
Q Consensus 83 ~~W~id~~~~~ 93 (148)
+||+|||+++.
T Consensus 99 ~~W~l~p~~~~ 109 (110)
T 3l2c_A 99 SWWMLNPEGGK 109 (110)
T ss_dssp CEEEEC-----
T ss_pred ceEEECccccC
Confidence 99999998863
No 9
>1e17_A AFX; DNA binding domain, winged helix; NMR {Homo sapiens} SCOP: a.4.5.14
Probab=100.00 E-value=2.8e-41 Score=258.68 Aligned_cols=87 Identities=44% Similarity=0.777 Sum_probs=78.8
Q ss_pred CCCCCCchHHHHHHHHHhhCCCCCcCHHHHHHHHHhhCCCcccc-----cccccccchhhcccccccccccCCCCCCCCc
Q psy14921 8 GNIKCTSSYASLIRLAISNAPQGRMTLNEIYQFITHTFPYYREA-----NAGWKNSIRHNLSLNKCFTKVARPKDDPGKG 82 (148)
Q Consensus 8 ~~~KPp~SYa~LI~~AI~~sp~~~LtL~eIY~~i~~~fPyyr~~-----~~gWknSIRHnLS~n~~F~Kv~r~~~~~gkg 82 (148)
.+.||||||++||+|||+++|+++|||+|||+||+++||||+.+ ..|||||||||||+|+||+||+| +++|||
T Consensus 37 rn~kPp~SYa~LI~~AI~sSp~k~LTL~eIY~wI~~~fPYfr~~~d~~s~~gWqNSIRHNLSLnk~F~Kv~r--~~~GKG 114 (150)
T 1e17_A 37 RNAWGNQSYAELISQAIESAPEKRLTLAQIYEWMVRTVPYFKDKGDSNSSAGWKNSIRHNLSLHSKFIKVHN--EATGKS 114 (150)
T ss_dssp CCTTCSCCHHHHHHHHHHHSSSCCEEHHHHHHHHHHHCGGGHHHHTSTTHHHHHHHHHHHHHSSTTEEEECC--TTTSSS
T ss_pred CCCCCCCCHHHHHHHHHHhCCCCCccHHHHHHHHHHhCchhccCCCCccccchhhccceeeeeeeeeEecCC--CCCCCc
Confidence 47899999999999999999999999999999999999999975 48999999999999999999998 668999
Q ss_pred ceeeecCCCCCCCC
Q psy14921 83 SYWAIDYNHTADDG 96 (148)
Q Consensus 83 ~~W~id~~~~~~~~ 96 (148)
+||+||+++.....
T Consensus 115 ~~W~ldp~~~~~gk 128 (150)
T 1e17_A 115 SWWMLNPEGGKSGK 128 (150)
T ss_dssp CEEEECTTCC----
T ss_pred ceEEECcccccCCc
Confidence 99999999876543
No 10
>2a07_F Forkhead box protein P2; double-helix, swapping, homodimer, monomer, winged-helix, magnesium, transcription/DNA complex; 1.90A {Homo sapiens} SCOP: a.4.5.14 PDB: 2as5_F 2kiu_A 3qrf_F
Probab=100.00 E-value=4.2e-41 Score=240.03 Aligned_cols=77 Identities=47% Similarity=0.874 Sum_probs=73.9
Q ss_pred CCCCchHHHHHHHHHhhCCCCCcCHHHHHHHHHhhCCCcccccccccccchhhcccccccccccCCCCCCCCcceeeecC
Q psy14921 10 IKCTSSYASLIRLAISNAPQGRMTLNEIYQFITHTFPYYREANAGWKNSIRHNLSLNKCFTKVARPKDDPGKGSYWAIDY 89 (148)
Q Consensus 10 ~KPp~SYa~LI~~AI~~sp~~~LtL~eIY~~i~~~fPyyr~~~~gWknSIRHnLS~n~~F~Kv~r~~~~~gkg~~W~id~ 89 (148)
.||||||++||+|||+++|+++|||+|||+||+++||||+.+..|||||||||||+|+||+||++ |||+||+||+
T Consensus 2 ~KPp~SY~~LI~~AI~~sp~~~ltL~eIY~~i~~~fpyyr~~~~gWkNSIRHNLSln~~F~kv~~-----gkG~~W~l~~ 76 (93)
T 2a07_F 2 VRPPFTYATLIRQAIMESSDRQLTLNEIYSWFTRTFAYFRRNAATWKNAVRHNLSLHKCFVRVEN-----VKGAVWTVDE 76 (93)
T ss_dssp CCCSCCHHHHHHHHHHHSTTSCBCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCTTBCCEEC-----SSSEECCBCH
T ss_pred CCCCCCHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCccccCCCccccccceeeehhhceeecCC-----CCCCeeEECh
Confidence 69999999999999999999999999999999999999999999999999999999999999984 8999999998
Q ss_pred CC
Q psy14921 90 NH 91 (148)
Q Consensus 90 ~~ 91 (148)
+.
T Consensus 77 ~~ 78 (93)
T 2a07_F 77 VE 78 (93)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 11
>3g73_A Forkhead box protein M1; DNA-binding domain, forkhead transcription factors, FOXM1, W helix; HET: DNA; 2.21A {Homo sapiens}
Probab=100.00 E-value=8.4e-40 Score=248.86 Aligned_cols=87 Identities=39% Similarity=0.761 Sum_probs=79.0
Q ss_pred cCCC-CCCCCchHHHHHHHHHhhCCCCCcCHHHHHHHHHhhCCCccc-ccccccccchhhcccccccccccCCCCCCCCc
Q psy14921 5 YKTG-NIKCTSSYASLIRLAISNAPQGRMTLNEIYQFITHTFPYYRE-ANAGWKNSIRHNLSLNKCFTKVARPKDDPGKG 82 (148)
Q Consensus 5 y~~~-~~KPp~SYa~LI~~AI~~sp~~~LtL~eIY~~i~~~fPyyr~-~~~gWknSIRHnLS~n~~F~Kv~r~~~~~gkg 82 (148)
+... ..||||||++||+|||+++++++|||+|||+||+++||||+. +..|||||||||||+|+||+|+. +++|||
T Consensus 11 ~~~~~~~KPpySYa~LI~~AI~~sp~~~LTL~eIY~~I~~~fPyyr~~~~~gWqNSIRHNLSln~~F~r~~---~~~GKg 87 (142)
T 3g73_A 11 WQNSVSERPPYSYMAMIQFAINSTERKRMTLKDIYTWIEDHFPYFKHIAKPGWKNSIRHNLSLHDMFVRET---SANGKV 87 (142)
T ss_dssp ---CTTSCCSSCHHHHHHHHHHTSTTSEECHHHHHHHHHHHCTHHHHTSCTTHHHHHHHHHHHCTTEEEEE---CTTSCC
T ss_pred CCccCCCCCCCCHHHHHHHHHHhCCCCCcCHHHHHHHHHHhCCCccccCCCCccchhhhhhhhhhhheecC---CCCCCC
Confidence 4444 779999999999999999999999999999999999999998 89999999999999999999874 568999
Q ss_pred ceeeecCCCCCC
Q psy14921 83 SYWAIDYNHTAD 94 (148)
Q Consensus 83 ~~W~id~~~~~~ 94 (148)
+||+||++++..
T Consensus 88 ~~W~i~p~~~~~ 99 (142)
T 3g73_A 88 SFWTIHPSANRY 99 (142)
T ss_dssp EEEEECTTTCCC
T ss_pred ceEEECcccccc
Confidence 999999999764
No 12
>1uss_A Histone H1; DNA binding protein, linker histone, DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: a.4.5.13 PDB: 1yqa_A
Probab=93.69 E-value=0.088 Score=36.07 Aligned_cols=33 Identities=15% Similarity=0.333 Sum_probs=29.0
Q ss_pred hHHHHHHHHHhhCCCC-CcCHHHHHHHHHhhCCC
Q psy14921 15 SYASLIRLAISNAPQG-RMTLNEIYQFITHTFPY 47 (148)
Q Consensus 15 SYa~LI~~AI~~sp~~-~LtL~eIY~~i~~~fPy 47 (148)
+|..||..||.+..++ ..++..|..||+.+|+.
T Consensus 9 ~y~~MI~eAI~alker~GsS~~AIkKyI~~~y~~ 42 (88)
T 1uss_A 9 TYKEMILKSMPQLNDGKGSSRIVLKKYVKDTFSS 42 (88)
T ss_dssp CHHHHHHHHHHHSCCTTSBCHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHHhccCCCcCHHHHHHHHHHhCCC
Confidence 7899999999996665 49999999999999764
No 13
>1uhm_A Histone H1, histone HHO1P; winged helix-turn-helix, linker histone, riken structural genomics/proteomics initiative, RSGI; NMR {Saccharomyces cerevisiae} SCOP: a.4.5.13
Probab=93.18 E-value=0.071 Score=35.62 Aligned_cols=33 Identities=21% Similarity=0.385 Sum_probs=28.7
Q ss_pred hHHHHHHHHHhhCCCC-CcCHHHHHHHHHhhCCC
Q psy14921 15 SYASLIRLAISNAPQG-RMTLNEIYQFITHTFPY 47 (148)
Q Consensus 15 SYa~LI~~AI~~sp~~-~LtL~eIY~~i~~~fPy 47 (148)
+|..||..||.+..++ ..++..|-.||+.+|+.
T Consensus 6 ~y~~MI~eAI~~lker~GsS~~AIkKyI~~~y~~ 39 (78)
T 1uhm_A 6 SYRELIIEGLTALKERKGSSRPALKKFIKENYPI 39 (78)
T ss_dssp CHHHHHHHHHHHHCCSSCEEHHHHHHHHHTTSCT
T ss_pred CHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCCC
Confidence 7999999999995554 49999999999999774
No 14
>1hst_A Histone H5; chromosomal protein; 2.60A {Gallus gallus} SCOP: a.4.5.13
Probab=92.90 E-value=0.11 Score=35.80 Aligned_cols=32 Identities=19% Similarity=0.365 Sum_probs=28.6
Q ss_pred hHHHHHHHHHhhCCCC-CcCHHHHHHHHHhhCC
Q psy14921 15 SYASLIRLAISNAPQG-RMTLNEIYQFITHTFP 46 (148)
Q Consensus 15 SYa~LI~~AI~~sp~~-~LtL~eIY~~i~~~fP 46 (148)
+|.+||..||.+..++ ..++..|-.||+.+|+
T Consensus 9 ~y~~MI~eAI~~lker~GsS~~AI~KyI~~~y~ 41 (90)
T 1hst_A 9 TYSEMIAAAIRAEKSRGGSSRQSIQKYIKSHYK 41 (90)
T ss_dssp CHHHHHHHHHHTCCCSSCEEHHHHHHHHHHHSC
T ss_pred CHHHHHHHHHHHhccCCCCCHHHHHHHHHHHcc
Confidence 7899999999996665 4999999999999976
No 15
>1ust_A Histone H1; DNA binding protein, linker histone, DNA binding domain, winged helix fold; NMR {Saccharomyces cerevisiae} SCOP: a.4.5.13
Probab=91.80 E-value=0.13 Score=35.64 Aligned_cols=33 Identities=21% Similarity=0.385 Sum_probs=28.7
Q ss_pred hHHHHHHHHHhhCCCC-CcCHHHHHHHHHhhCCC
Q psy14921 15 SYASLIRLAISNAPQG-RMTLNEIYQFITHTFPY 47 (148)
Q Consensus 15 SYa~LI~~AI~~sp~~-~LtL~eIY~~i~~~fPy 47 (148)
+|..||..||.+..++ ..++..|-.||+.+|+.
T Consensus 9 ~y~~MI~eAI~alker~GsS~~AIkKyI~~~y~~ 42 (93)
T 1ust_A 9 SYRELIIEGLTALKERKGSSRPALKKFIKENYPI 42 (93)
T ss_dssp CHHHHHHHHHTTTTTTSCEEHHHHHHHHHHHCHH
T ss_pred CHHHHHHHHHHHcccCCCcCHHHHHHHHHHHCCC
Confidence 7899999999996655 49999999999999753
No 16
>2rqp_A Heterochromatin protein 1-binding protein 3; histone H1, alternative splicing, chromosomal protein, DNA-binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=91.33 E-value=0.078 Score=36.21 Aligned_cols=35 Identities=20% Similarity=0.365 Sum_probs=29.2
Q ss_pred chHHHHHHHHHhhCCC-CCcCHHHHHHHHHhhCCCc
Q psy14921 14 SSYASLIRLAISNAPQ-GRMTLNEIYQFITHTFPYY 48 (148)
Q Consensus 14 ~SYa~LI~~AI~~sp~-~~LtL~eIY~~i~~~fPyy 48 (148)
-+|.+||..||.+..+ +..++..|..||+.+|+-+
T Consensus 10 p~y~~MI~eAI~~Lker~GsS~~AI~KyI~~~y~~~ 45 (88)
T 2rqp_A 10 PKMDAILTEAIKACFQKSGASVVAIRKYIIHKYPSL 45 (88)
T ss_dssp CCHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHCSTH
T ss_pred CCHHHHHHHHHHHhccCCCcCHHHHHHHHHHhCCCC
Confidence 3789999999998444 3489999999999999844
No 17
>2lso_A Histone H1X; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, nuclear protein; NMR {Homo sapiens}
Probab=84.37 E-value=0.21 Score=33.87 Aligned_cols=34 Identities=18% Similarity=0.187 Sum_probs=28.5
Q ss_pred CchHHHHHHHHHhhCCCCC-cCHHHHHHHHHhhCC
Q psy14921 13 TSSYASLIRLAISNAPQGR-MTLNEIYQFITHTFP 46 (148)
Q Consensus 13 p~SYa~LI~~AI~~sp~~~-LtL~eIY~~i~~~fP 46 (148)
|-+|..||..||.+-.++. -++..|..+|..++.
T Consensus 5 ~~~y~~MI~eAI~aLker~GSS~~AI~K~i~~~~~ 39 (83)
T 2lso_A 5 PGKYSQLVVETIRRLGERNGSSLAKIYTEAKKVPW 39 (83)
Confidence 3489999999999865554 899999999999875
No 18
>1ghc_A GH1; chromosomal protein; NMR {Gallus gallus} SCOP: a.4.5.13
Probab=72.58 E-value=0.45 Score=31.12 Aligned_cols=30 Identities=20% Similarity=0.275 Sum_probs=26.1
Q ss_pred hHHHHHHHHHhhCCCC-CcCHHHHHHHHHhh
Q psy14921 15 SYASLIRLAISNAPQG-RMTLNEIYQFITHT 44 (148)
Q Consensus 15 SYa~LI~~AI~~sp~~-~LtL~eIY~~i~~~ 44 (148)
+|..||..||.+..++ ..++..|..||+.+
T Consensus 5 ~y~~mI~~AI~alker~GsS~~AI~Kyi~~~ 35 (75)
T 1ghc_A 5 SVTELITKAVSASKERKGLSLAALKKALAAG 35 (75)
T ss_dssp SHHHHHHHHHHHCSSSSCCTTSSGGGSSSSS
T ss_pred CHHHHHHHHHHHhccCCcccHHHHHHHHHHc
Confidence 6899999999996554 48999999999998
No 19
>1jb0_X Photosystem I subunit PSAX; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.20.1 PDB: 3pcq_X*
Probab=53.41 E-value=8.4 Score=22.04 Aligned_cols=19 Identities=32% Similarity=0.345 Sum_probs=12.1
Q ss_pred CCCCCCCchH---HHHHHHHHh
Q psy14921 7 TGNIKCTSSY---ASLIRLAIS 25 (148)
Q Consensus 7 ~~~~KPp~SY---a~LI~~AI~ 25 (148)
++..||||.| .+|+-+||.
T Consensus 2 ~~~akp~y~frt~WalllLaIN 23 (35)
T 1jb0_X 2 TKSAKPTYAFRTFWAVLLLAIN 23 (35)
T ss_dssp -----CCCCHHHHHHHHHHHHH
T ss_pred CCCCCCCccHHHHHHHHHHHHH
Confidence 3567999999 888888875
No 20
>2kzv_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; NMR {Chromobacterium violaceum}
Probab=48.34 E-value=45 Score=22.58 Aligned_cols=44 Identities=16% Similarity=0.268 Sum_probs=34.7
Q ss_pred CchHHHHHHHHHhh--CCCCCcCHHHHHHHHHhhCCCccccccccc
Q psy14921 13 TSSYASLIRLAISN--APQGRMTLNEIYQFITHTFPYYREANAGWK 56 (148)
Q Consensus 13 p~SYa~LI~~AI~~--sp~~~LtL~eIY~~i~~~fPyyr~~~~gWk 56 (148)
.-.-..||..||.+ ..+|-..|.+|-++|.+.+|-|..-.=|.+
T Consensus 6 d~~l~~ll~~Ai~~~~dedGWa~Lg~vG~~i~k~~PdFD~RnYGy~ 51 (92)
T 2kzv_A 6 KHPLQDMFTSAIEAVARDSGWAELSAVGSYLAKNDPSFDPRNWGHG 51 (92)
T ss_dssp CSSHHHHHHHHHHHHTTTTSSCBHHHHHHHHHHHCTTCCTTTTCSS
T ss_pred hHHHHHHHHHHHHHhcCCCCcEeHHHHHHHHHHhCcCCCccccCcc
Confidence 34567899999887 346679999999999999999976554544
No 21
>2kpm_A Uncharacterized protein; methods development, structural genomics, PSI-2, protein structure initiative; NMR {Nitrosomonas europaea}
Probab=48.33 E-value=33 Score=23.99 Aligned_cols=62 Identities=13% Similarity=0.223 Sum_probs=41.0
Q ss_pred hHHHHHHHHHhhCC--CCCcCHHHHHHHHHhhCCCcccccccccccchhhccc-ccccccccCCCC
Q psy14921 15 SYASLIRLAISNAP--QGRMTLNEIYQFITHTFPYYREANAGWKNSIRHNLSL-NKCFTKVARPKD 77 (148)
Q Consensus 15 SYa~LI~~AI~~sp--~~~LtL~eIY~~i~~~fPyyr~~~~gWknSIRHnLS~-n~~F~Kv~r~~~ 77 (148)
.-..||..||.+.. +|-..|.+|-++|.+.+|-|..-.=|.+ +.+.-|-- -+.|+=..|..+
T Consensus 21 ~l~~lL~~Ai~~~~dddGWa~Lg~vG~~L~k~~PdFDpRnYGy~-kLs~Li~a~~~~FEi~~r~~~ 85 (105)
T 2kpm_A 21 FPRKFVLAALEQSSDDAGWANLGNFGNYLNKLQPDFDSRLYGYK-KLSDLVKARTDLFVTEERQVP 85 (105)
T ss_dssp CCHHHHHHHHHHTBCTTSCEEHHHHHHHHHHHCTTCCGGGTTCS-SHHHHHHHCTTTEEEEEEECT
T ss_pred HHHHHHHHHHHHhcCCcCcEeHHHHHHHHHHhCcCCCccccCcc-cHHHHHHhhCCcEEEEeecCC
Confidence 34689999998844 5679999999999999999976544444 23332222 344554444333
No 22
>3rsn_A SET1/ASH2 histone methyltransferase complex subun; PHD domain, winged helix domain, binding, transcription; 2.10A {Homo sapiens} PDB: 3s32_A
Probab=47.00 E-value=21 Score=27.35 Aligned_cols=62 Identities=18% Similarity=0.326 Sum_probs=46.1
Q ss_pred CCchHHHHHHHHHhh----------CCCCCcCHH-HHHHHHHhhCCCccc----ccccccccchhhcccc-ccccccc
Q psy14921 12 CTSSYASLIRLAISN----------APQGRMTLN-EIYQFITHTFPYYRE----ANAGWKNSIRHNLSLN-KCFTKVA 73 (148)
Q Consensus 12 Pp~SYa~LI~~AI~~----------sp~~~LtL~-eIY~~i~~~fPyyr~----~~~gWknSIRHnLS~n-~~F~Kv~ 73 (148)
=+.++.+|+..||-+ .+.+-..+. ||.-||.+++-.... ....|...|-..|+.+ ..|..-.
T Consensus 67 ~~~~w~~v~~laLyNL~~~~~~~~~~~k~yF~~~~dIipfI~~nWe~L~~~~r~~k~~W~~ti~~aLs~~~~~F~~~~ 144 (177)
T 3rsn_A 67 KQANLKEMCLSALANLTWQSRTQDEHPKTMFSKDKDIIPFIDKYWECMTTRQRPGKMTWPNNIVKTMSKERDVFLVKE 144 (177)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHCSSCCSCEETTTTHHHHHHHTGGGTCCCCCCSCCSGGGTHHHHHHTCTTTEEEES
T ss_pred ccCCHHHHHHHHHHhhhhhhhhcccCccccccccchHHHHHHHHHHHhcCCCccccccHHHHHHHHHhcCCceEEecc
Confidence 356788888777665 234445666 999999999998853 3478999999999965 4776543
No 23
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=42.39 E-value=29 Score=24.27 Aligned_cols=30 Identities=17% Similarity=0.198 Sum_probs=22.9
Q ss_pred HHHHHHhhCCCCCcCHHHHHHHHHhhCCCc
Q psy14921 19 LIRLAISNAPQGRMTLNEIYQFITHTFPYY 48 (148)
Q Consensus 19 LI~~AI~~sp~~~LtL~eIY~~i~~~fPyy 48 (148)
.|-.+|.++.++-+|..|||+.+.+.+|-.
T Consensus 22 ~Il~~L~~~~~~~~sa~ei~~~l~~~~~~i 51 (136)
T 1mzb_A 22 KILQMLDSAEQRHMSAEDVYKALMEAGEDV 51 (136)
T ss_dssp HHHHHHHCC-CCSBCHHHHHHHHHHTTCCC
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHhhCCCC
Confidence 466677766536799999999999988853
No 24
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=35.81 E-value=30 Score=21.62 Aligned_cols=41 Identities=7% Similarity=0.074 Sum_probs=28.0
Q ss_pred HHHHHHhhCCCCCcCHHHHHHHHHhhCCCcccccccccccchhhccc
Q psy14921 19 LIRLAISNAPQGRMTLNEIYQFITHTFPYYREANAGWKNSIRHNLSL 65 (148)
Q Consensus 19 LI~~AI~~sp~~~LtL~eIY~~i~~~fPyyr~~~~gWknSIRHnLS~ 65 (148)
.|-.+|...+++.+|+.||++.+.+.+|-.. +.+|+.+|..
T Consensus 21 ~IL~~l~~~~~~~~s~~el~~~l~~~~~~is------~~TVyR~L~~ 61 (83)
T 2fu4_A 21 KILEVLQEPDNHHVSAEDLYKRLIDMGEEIG------LATVYRVLNQ 61 (83)
T ss_dssp HHHHHHTSGGGSSBCHHHHHHHHHHTTCCCC------HHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCC------HhhHHHHHHH
Confidence 3555666544267999999999988877432 3457777654
No 25
>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A
Probab=31.80 E-value=22 Score=28.15 Aligned_cols=33 Identities=27% Similarity=0.467 Sum_probs=27.5
Q ss_pred hHHHHHHHHHhhCCCCCcCHHHHHH--HHHhhCCC
Q psy14921 15 SYASLIRLAISNAPQGRMTLNEIYQ--FITHTFPY 47 (148)
Q Consensus 15 SYa~LI~~AI~~sp~~~LtL~eIY~--~i~~~fPy 47 (148)
.-..||...+.-.|.+|+|..||.+ ||...+|-
T Consensus 238 ~~~~li~~~L~~dP~~R~s~~eil~hpw~k~~~p~ 272 (275)
T 3hyh_A 238 GAAGLIKRMLIVNPLNRISIHEIMQDDWFKVDLPE 272 (275)
T ss_dssp HHHHHHHHHSCSSGGGSCCHHHHHHCHHHHTTCCG
T ss_pred HHHHHHHHHccCChhHCcCHHHHHcCcccccCCCh
Confidence 3567999999999999999999987 77766664
No 26
>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...
Probab=31.39 E-value=11 Score=30.72 Aligned_cols=39 Identities=18% Similarity=0.455 Sum_probs=30.4
Q ss_pred HHHHHHHHHhhCCCCCcCHHHH--HHHHHhhCCCcccccccccc
Q psy14921 16 YASLIRLAISNAPQGRMTLNEI--YQFITHTFPYYREANAGWKN 57 (148)
Q Consensus 16 Ya~LI~~AI~~sp~~~LtL~eI--Y~~i~~~fPyyr~~~~gWkn 57 (148)
-..||...|.-.|.+|+|..|+ +.||.+ .|||+.- .|.+
T Consensus 261 ~~dli~~lL~~dp~~R~t~~e~~~~~~i~~-Hp~F~~i--dw~~ 301 (311)
T 4aw0_A 261 ARDLVEKLLVLDATKRLGCEEMEGYGPLKA-HPFFESV--TWEN 301 (311)
T ss_dssp HHHHHHHHSCSSGGGSTTSGGGTCHHHHHT-SGGGTTC--CCTT
T ss_pred HHHHHHHHccCCHhHCcChHHHcCCHHHHC-CCCcCCC--CHHH
Confidence 4578999999999999999998 567754 5999753 3654
No 27
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=30.49 E-value=44 Score=23.53 Aligned_cols=29 Identities=10% Similarity=0.096 Sum_probs=22.2
Q ss_pred HHHHHHhhCCCCCcCHHHHHHHHHhhCCCc
Q psy14921 19 LIRLAISNAPQGRMTLNEIYQFITHTFPYY 48 (148)
Q Consensus 19 LI~~AI~~sp~~~LtL~eIY~~i~~~fPyy 48 (148)
.|-.+|.++. +-+|..|||+.+.+.+|-.
T Consensus 18 ~Il~~L~~~~-~h~sa~eI~~~l~~~~~~i 46 (139)
T 3mwm_A 18 AVSAALQEVE-EFRSAQELHDMLKHKGDAV 46 (139)
T ss_dssp HHHHHHTTCS-SCEEHHHHHHHHHHTTCCC
T ss_pred HHHHHHHhCC-CCCCHHHHHHHHHHhCCCC
Confidence 4556666664 4799999999999888753
No 28
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=29.38 E-value=53 Score=22.71 Aligned_cols=29 Identities=7% Similarity=-0.044 Sum_probs=22.6
Q ss_pred HHHHHHhhCCCCCcCHHHHHHHHHhhCCCc
Q psy14921 19 LIRLAISNAPQGRMTLNEIYQFITHTFPYY 48 (148)
Q Consensus 19 LI~~AI~~sp~~~LtL~eIY~~i~~~fPyy 48 (148)
.|-.+|.++ ++-+|..|||+.+.+.+|-.
T Consensus 15 ~Il~~l~~~-~~~~sa~ei~~~l~~~~~~i 43 (131)
T 2o03_A 15 AISTLLETL-DDFRSAQELHDELRRRGENI 43 (131)
T ss_dssp HHHHHHHHC-CSCEEHHHHHHHHHHTTCCC
T ss_pred HHHHHHHhC-CCCCCHHHHHHHHHHhCCCC
Confidence 466667665 45699999999999988754
No 29
>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A
Probab=28.83 E-value=58 Score=24.14 Aligned_cols=34 Identities=15% Similarity=0.211 Sum_probs=29.6
Q ss_pred CchHHHHHHHHHhhCCCCCcCHHHHHHHHHhhCC
Q psy14921 13 TSSYASLIRLAISNAPQGRMTLNEIYQFITHTFP 46 (148)
Q Consensus 13 p~SYa~LI~~AI~~sp~~~LtL~eIY~~i~~~fP 46 (148)
+-....||..++...|..|.|..||.+.+.+-+.
T Consensus 247 ~~~l~~li~~~l~~~p~~Rpt~~~l~~~l~~~~~ 280 (296)
T 4hgt_A 247 PSEFATYLNFCRSLRFDDKPDYSYLRQLFRNLFH 280 (296)
T ss_dssp CHHHHHHHHHHHTSCTTCCCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Confidence 4468899999999999999999999999887654
No 30
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=28.60 E-value=34 Score=24.47 Aligned_cols=30 Identities=10% Similarity=0.069 Sum_probs=22.8
Q ss_pred HHHHHHhhCCCCCcCHHHHHHHHHhhCCCc
Q psy14921 19 LIRLAISNAPQGRMTLNEIYQFITHTFPYY 48 (148)
Q Consensus 19 LI~~AI~~sp~~~LtL~eIY~~i~~~fPyy 48 (148)
.|-.+|.++.++-+|..|||+.+.+.+|-.
T Consensus 21 ~Il~~L~~~~~~h~sa~ei~~~l~~~~~~i 50 (150)
T 2w57_A 21 KILEVLQQPECQHISAEELYKKLIDLGEEI 50 (150)
T ss_dssp HHHHHHTSGGGSSEEHHHHHHHHHHTTCCC
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHhCCCC
Confidence 456666655436799999999999988853
No 31
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=26.49 E-value=71 Score=22.69 Aligned_cols=29 Identities=10% Similarity=0.005 Sum_probs=22.7
Q ss_pred HHHHHHhhCCCCCcCHHHHHHHHHhhCCCc
Q psy14921 19 LIRLAISNAPQGRMTLNEIYQFITHTFPYY 48 (148)
Q Consensus 19 LI~~AI~~sp~~~LtL~eIY~~i~~~fPyy 48 (148)
.|-.+|.++. +-+|..|||+.+.+.+|-.
T Consensus 31 ~IL~~l~~~~-~~~sa~ei~~~l~~~~~~i 59 (150)
T 2xig_A 31 EVVSVLYRSG-THLSPEEITHSIRQKDKNT 59 (150)
T ss_dssp HHHHHHHHCS-SCBCHHHHHHHHHHHSTTC
T ss_pred HHHHHHHhCC-CCCCHHHHHHHHHHhCCCC
Confidence 4666777664 4699999999999988853
No 32
>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A
Probab=24.96 E-value=74 Score=23.57 Aligned_cols=34 Identities=15% Similarity=0.211 Sum_probs=28.9
Q ss_pred CchHHHHHHHHHhhCCCCCcCHHHHHHHHHhhCC
Q psy14921 13 TSSYASLIRLAISNAPQGRMTLNEIYQFITHTFP 46 (148)
Q Consensus 13 p~SYa~LI~~AI~~sp~~~LtL~eIY~~i~~~fP 46 (148)
+-....||..++...|..|.|..||.+.+.+-+.
T Consensus 247 ~~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~~~ 280 (296)
T 3uzp_A 247 PSEFATYLNFCRSLRFDDKPDYSYLRQLFRNLFH 280 (296)
T ss_dssp CHHHHHHHHHHHTSCTTCCCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcCcCcCCCHHHHHHHHHHHHH
Confidence 3457899999999999999999999998886543
No 33
>2i9n_A MHB4A peptide; beta-hairpin, alpha-helix, de novo protein; NMR {Synthetic}
Probab=24.71 E-value=65 Score=17.72 Aligned_cols=24 Identities=33% Similarity=0.447 Sum_probs=20.4
Q ss_pred ceecCCCCCCCCchHHHHHHHHHh
Q psy14921 2 CITYKTGNIKCTSSYASLIRLAIS 25 (148)
Q Consensus 2 ~~~y~~~~~KPp~SYa~LI~~AI~ 25 (148)
||.|..+..--.-.|+.-|++|+.
T Consensus 8 gityeggggsaaeayakriaeama 31 (33)
T 2i9n_A 8 GITYEGGGGSAAEAYAKRIAEAMA 31 (33)
T ss_dssp SCBCCSSCCCSTHHHHHHHHHHHC
T ss_pred CEEeecCCchHHHHHHHHHHHHHh
Confidence 678888888888899999999874
No 34
>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*
Probab=22.39 E-value=50 Score=24.50 Aligned_cols=32 Identities=16% Similarity=0.316 Sum_probs=27.7
Q ss_pred hHHHHHHHHHhhCCCCCcCHHHHHHHHHhhCC
Q psy14921 15 SYASLIRLAISNAPQGRMTLNEIYQFITHTFP 46 (148)
Q Consensus 15 SYa~LI~~AI~~sp~~~LtL~eIY~~i~~~fP 46 (148)
....||..++.-.|..|.|..||.+++.+..+
T Consensus 253 ~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~ 284 (291)
T 1u46_A 253 DIYNVMVQCWAHKPEDRPTFVALRDFLLEAQP 284 (291)
T ss_dssp HHHHHHHHHTCSSGGGSCCHHHHHHHHHHHC-
T ss_pred HHHHHHHHHccCCcccCcCHHHHHHHHHHhCc
Confidence 47789999999999999999999999987654
No 35
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=22.38 E-value=88 Score=21.98 Aligned_cols=29 Identities=24% Similarity=0.364 Sum_probs=22.2
Q ss_pred HHHHHHhhCCCCCcCHHHHHHHHHhhCCCc
Q psy14921 19 LIRLAISNAPQGRMTLNEIYQFITHTFPYY 48 (148)
Q Consensus 19 LI~~AI~~sp~~~LtL~eIY~~i~~~fPyy 48 (148)
.|-.+|.++ ++-+|..|||+.+.+.+|-.
T Consensus 26 ~Il~~L~~~-~~~~sa~ei~~~l~~~~~~i 54 (145)
T 2fe3_A 26 AILEYLVNS-MAHPTADDIYKALEGKFPNM 54 (145)
T ss_dssp HHHHHHHHC-SSCCCHHHHHHHHGGGCTTC
T ss_pred HHHHHHHhC-CCCCCHHHHHHHHHHhCCCC
Confidence 456667665 45699999999999888753
No 36
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=22.29 E-value=70 Score=22.61 Aligned_cols=28 Identities=18% Similarity=0.126 Sum_probs=21.8
Q ss_pred HHHHHHhhCCCCCcCHHHHHHHHHhhCCCc
Q psy14921 19 LIRLAISNAPQGRMTLNEIYQFITHTFPYY 48 (148)
Q Consensus 19 LI~~AI~~sp~~~LtL~eIY~~i~~~fPyy 48 (148)
.|-.+|.++. -+|..|||+.+.+.+|-.
T Consensus 23 ~Il~~l~~~~--h~ta~ei~~~l~~~~~~i 50 (145)
T 3eyy_A 23 LVLEAVDTLE--HATPDDILGEVRKTASGI 50 (145)
T ss_dssp HHHHHHHHHS--SBCHHHHHHHHHTTCTTC
T ss_pred HHHHHHHhcC--CCCHHHHHHHHHhhCCCC
Confidence 4556666664 699999999999988853
No 37
>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*
Probab=22.22 E-value=97 Score=22.93 Aligned_cols=33 Identities=6% Similarity=0.083 Sum_probs=28.4
Q ss_pred chHHHHHHHHHhhCCCCCcCHHHHHHHHHhhCC
Q psy14921 14 SSYASLIRLAISNAPQGRMTLNEIYQFITHTFP 46 (148)
Q Consensus 14 ~SYa~LI~~AI~~sp~~~LtL~eIY~~i~~~fP 46 (148)
-....||..++...|..|.|..||.+.+.+-+.
T Consensus 251 ~~l~~li~~~l~~dp~~RP~~~~l~~~l~~~~~ 283 (298)
T 1csn_A 251 EEFYKYMHYARNLAFDATPDYDYLQGLFSKVLE 283 (298)
T ss_dssp HHHHHHHHHHHHCCTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCcccCCCHHHHHHHHHHHHH
Confidence 357889999999999999999999998876543
No 38
>3dra_B Geranylgeranyltransferase type I beta subunit; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=21.85 E-value=69 Score=27.08 Aligned_cols=33 Identities=21% Similarity=0.341 Sum_probs=27.4
Q ss_pred CchHHHHHHHHHhhCC-CCCcCHHHHHHHHHhhC
Q psy14921 13 TSSYASLIRLAISNAP-QGRMTLNEIYQFITHTF 45 (148)
Q Consensus 13 p~SYa~LI~~AI~~sp-~~~LtL~eIY~~i~~~f 45 (148)
+.||++|..+||.... -.++...+|++||..--
T Consensus 95 ~~Ty~Al~~L~ilg~~~~~~vdr~~i~~~l~~lQ 128 (390)
T 3dra_B 95 SSTLFALYNLLILKSPYHTIINRKKIMNFLCKCQ 128 (390)
T ss_dssp HHHHHHHHHHHHTTCCGGGTCCHHHHHHHHHHHB
T ss_pred HHHHHHHHHHHHhCchhhccccHHHHHHHHHHHh
Confidence 5799999999999876 25688899999997643
No 39
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=20.39 E-value=88 Score=22.62 Aligned_cols=28 Identities=11% Similarity=0.090 Sum_probs=21.7
Q ss_pred HHHHHHhhCCCCCcCHHHHHHHHHhh--CCC
Q psy14921 19 LIRLAISNAPQGRMTLNEIYQFITHT--FPY 47 (148)
Q Consensus 19 LI~~AI~~sp~~~LtL~eIY~~i~~~--fPy 47 (148)
.|-.+|.++. +-+|..|||+.+... +|-
T Consensus 37 ~IL~~L~~~~-~h~sA~eI~~~l~~~~~~~~ 66 (162)
T 4ets_A 37 VLLKTLYHSD-THYTPESLYMEIKQAEPDLN 66 (162)
T ss_dssp HHHHHHHSCC-SCBCHHHHHHHHHHHCGGGC
T ss_pred HHHHHHHhCC-CCCCHHHHHHHHHhhcCCCC
Confidence 4666677665 669999999999988 553
No 40
>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...
Probab=20.21 E-value=44 Score=24.84 Aligned_cols=32 Identities=25% Similarity=0.297 Sum_probs=27.8
Q ss_pred chHHHHHHHHHhhCCCCCcCHHHHHHHHHhhC
Q psy14921 14 SSYASLIRLAISNAPQGRMTLNEIYQFITHTF 45 (148)
Q Consensus 14 ~SYa~LI~~AI~~sp~~~LtL~eIY~~i~~~f 45 (148)
-....||..++.-.|..|.|..||.+.+..-+
T Consensus 239 ~~l~~li~~~l~~dp~~Rps~~~~~~~l~~~~ 270 (288)
T 3kfa_A 239 EKVYELMRACWQWNPSDRPSFAEIHQAFETMF 270 (288)
T ss_dssp HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCChhhCcCHHHHHHHHHHHH
Confidence 34778999999999999999999999987654
No 41
>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*
Probab=20.08 E-value=62 Score=23.82 Aligned_cols=34 Identities=24% Similarity=0.423 Sum_probs=27.2
Q ss_pred chHHHHHHHHHhhCCCCCcCHHHHHH--HHHhhCCC
Q psy14921 14 SSYASLIRLAISNAPQGRMTLNEIYQ--FITHTFPY 47 (148)
Q Consensus 14 ~SYa~LI~~AI~~sp~~~LtL~eIY~--~i~~~fPy 47 (148)
-....||..++.-.|..|.|+.||.+ |+.+.+|-
T Consensus 236 ~~l~~li~~~l~~~p~~Rps~~~~l~h~~~~~~~~~ 271 (276)
T 2h6d_A 236 RSVATLLMHMLQVDPLKRATIKDIREHEWFKQDLPS 271 (276)
T ss_dssp HHHHHHHHHHTCSSGGGSCCHHHHHHSHHHHTTCCG
T ss_pred HHHHHHHHHHccCChhhCCCHHHHHhChhhccCchh
Confidence 35678999999999999999999986 56555543
Done!