RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14921
(148 letters)
>gnl|CDD|238016 cd00059, FH, Forkhead (FH), also known as a "winged helix". FH
is named for the Drosophila fork head protein, a
transcription factor which promotes terminal rather
than segmental development. This family of
transcription factor domains, which bind to B-DNA as
monomers, are also found in the Hepatocyte nuclear
factor (HNF) proteins, which provide tissue-specific
gene regulation. The structure contains 2 flexible
loops or "wings" in the C-terminal region, hence the
term winged helix.
Length = 78
Score = 136 bits (346), Expect = 4e-43
Identities = 47/74 (63%), Positives = 63/74 (85%)
Query: 15 SYASLIRLAISNAPQGRMTLNEIYQFITHTFPYYREANAGWKNSIRHNLSLNKCFTKVAR 74
SY++LI +AI ++P+ R+TL+EIY++I+ FPY+R+A AGW+NSIRHNLSLNKCF KV R
Sbjct: 5 SYSALIAMAIQSSPEKRLTLSEIYKWISDNFPYFRDAPAGWQNSIRHNLSLNKCFVKVPR 64
Query: 75 PKDDPGKGSYWAID 88
D+PGKGSYW +D
Sbjct: 65 EPDEPGKGSYWTLD 78
>gnl|CDD|214627 smart00339, FH, FORKHEAD. FORKHEAD, also known as a "winged
helix".
Length = 89
Score = 134 bits (340), Expect = 3e-42
Identities = 47/74 (63%), Positives = 57/74 (77%)
Query: 15 SYASLIRLAISNAPQGRMTLNEIYQFITHTFPYYREANAGWKNSIRHNLSLNKCFTKVAR 74
SY +LI +AI ++P R+TL+EIY++I FPYYRE AGW+NSIRHNLSLN CF KV R
Sbjct: 5 SYIALIAMAILSSPDKRLTLSEIYKWIEDNFPYYRENRAGWQNSIRHNLSLNDCFVKVPR 64
Query: 75 PKDDPGKGSYWAID 88
D PGKGSYW +D
Sbjct: 65 EGDRPGKGSYWTLD 78
>gnl|CDD|189470 pfam00250, Fork_head, Fork head domain.
Length = 96
Score = 129 bits (326), Expect = 7e-40
Identities = 46/74 (62%), Positives = 56/74 (75%)
Query: 15 SYASLIRLAISNAPQGRMTLNEIYQFITHTFPYYREANAGWKNSIRHNLSLNKCFTKVAR 74
SY +LI +AI +P+ +TL+EIYQ+I FPYYR+ GW+NSIRHNLSLNKCF KV R
Sbjct: 5 SYIALITMAIQQSPEKMLTLSEIYQWIMDLFPYYRQNKQGWQNSIRHNLSLNKCFIKVPR 64
Query: 75 PKDDPGKGSYWAID 88
D PGKGSYW +D
Sbjct: 65 SPDKPGKGSYWTLD 78
>gnl|CDD|227358 COG5025, COG5025, Transcription factor of the Forkhead/HNF3 family
[Transcription].
Length = 610
Score = 89.1 bits (221), Expect = 2e-21
Identities = 44/95 (46%), Positives = 57/95 (60%)
Query: 9 NIKCTSSYASLIRLAISNAPQGRMTLNEIYQFITHTFPYYREANAGWKNSIRHNLSLNKC 68
K SYA+ I AI ++P G+MTL+EIY +I+ PYYR W+NSIRHNLSLNK
Sbjct: 335 TSKPAFSYANSITQAILSSPSGKMTLSEIYSWISSNLPYYRHKPTAWQNSIRHNLSLNKS 394
Query: 69 FTKVARPKDDPGKGSYWAIDYNHTADDGPSKKKVK 103
F KV R PGKG +W IDY++ + +
Sbjct: 395 FEKVPRSASQPGKGCFWKIDYSYIYEKESKRNPRS 429
Score = 66.0 bits (161), Expect = 2e-13
Identities = 35/77 (45%), Positives = 48/77 (62%)
Query: 15 SYASLIRLAISNAPQGRMTLNEIYQFITHTFPYYREANAGWKNSIRHNLSLNKCFTKVAR 74
SYA+ LAI N+P +TL++IY +I +TF YY + + W+NSIRHNLSLN F K+
Sbjct: 90 SYATGRGLAILNSPDKPLTLSKIYTWIHNTFFYYAKVVSRWQNSIRHNLSLNDAFIKIEG 149
Query: 75 PKDDPGKGSYWAIDYNH 91
KG +W+I H
Sbjct: 150 RNGAKVKGHFWSIGPGH 166
Score = 30.2 bits (68), Expect = 0.34
Identities = 12/71 (16%), Positives = 24/71 (33%), Gaps = 5/71 (7%)
Query: 14 SSYASLIRLAISNAPQGRMTLNEIYQFITHTFPYYREANAGWKNSIRHNLSLNKCFTKVA 73
++LIR+ ++ ++L + P ++G +N R N S
Sbjct: 225 IKSSALIRIPADSSSNLDVSLGHHISQPSTHTPVLDNHSSGEENISRINNSSQID----- 279
Query: 74 RPKDDPGKGSY 84
P + S
Sbjct: 280 SPTPNYRMSSI 290
>gnl|CDD|223374 COG0297, GlgA, Glycogen synthase [Carbohydrate transport and
metabolism].
Length = 487
Score = 33.8 bits (78), Expect = 0.023
Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 8/62 (12%)
Query: 44 TFPYYREANAGWKNSIRHNLS--LNKCFTKVARPKDDPGKGSYWAIDYNHTADDGPSKKK 101
P Y E G + LS LN + P+ DP I N++A+ P+K +
Sbjct: 224 YTPEYGEGLEGLLSWRSGKLSGILNGIDYDLWNPETDP------YIAANYSAEVLPAKAE 277
Query: 102 VK 103
K
Sbjct: 278 NK 279
>gnl|CDD|221395 pfam12048, DUF3530, Protein of unknown function (DUF3530). This
family of proteins is functionally uncharacterized. This
protein is found in bacteria. Proteins in this family
are typically between 272 to 336 amino acids in length.
These proteins are distantly related to alpa/beta
hydrolases so they may act as enzymes.
Length = 294
Score = 30.5 bits (69), Expect = 0.29
Identities = 15/52 (28%), Positives = 20/52 (38%), Gaps = 3/52 (5%)
Query: 80 GKGSYWAIDYNHTADDGPSKKKVKLPRVSPYSPVECNNSNSSSDVHNSKPPT 131
G G+ WAI Y + PS L +S YSP N + + P
Sbjct: 185 GTGAGWAIRY---LAEKPSPAPDALVLISAYSPQSDLNKALAEQLAELALPI 233
>gnl|CDD|217970 pfam04220, YihI, Der GTPase activator (YihI). YihI activates the
GTPase activity of Der, a 50S ribosomal subunit
stability factor. The stimulation is specific to Der as
YihI does not stimulate the GTPase activity of Era or
ObgE. The interaction of YihI with Der requires only the
C-terminal 78 amino acids of YihI. A yihI deletion
mutant is viable and shows a shorter lag period, but the
same post-lag growth rate as a wild-type strain. yihI is
expressed during the lag period. Overexpression of yihI
inhibits cell growth and biogenesis of the 50S ribosomal
subunit. YihI is an unusual, highly hydrophilic protein
with an uneven distribution of charged residues,
resulting in an N-terminal region with high pI and a
C-terminal region with low pI.
Length = 169
Score = 28.5 bits (64), Expect = 1.00
Identities = 19/55 (34%), Positives = 22/55 (40%), Gaps = 5/55 (9%)
Query: 60 RHNLSLNKCFTKVARPKDDPGKGSYWAI-----DYNHTADDGPSKKKVKLPRVSP 109
RHN K A K DP GS + P KKKVK P++SP
Sbjct: 43 RHNEESESQKQKGAAQKKDPRIGSKKPVPLIVEFKVKPEKQAPKKKKVKKPKLSP 97
>gnl|CDD|181779 PRK09326, PRK09326, F420H2 dehydrogenase subunit F; Provisional.
Length = 341
Score = 28.3 bits (63), Expect = 1.7
Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 15/85 (17%)
Query: 58 SIRHNLSLNKCFTKV--ARPKD----DPGKGSYWAIDYNHTADDGPSKKKVKLPRVSPYS 111
S H++ L+K ++ + +D D KG +WA DG V + V+ Y+
Sbjct: 196 SFHHDVMLDKIIPEIMGVKIEDVVKMDFTKGKFWAY-----TKDGEVHS-VPIKDVAKYA 249
Query: 112 PVECNNSNSSSDVHNSKPPTSISSV 136
C++ + V S+ SV
Sbjct: 250 RNPCHHCCDYTSVFAD---ISVGSV 271
>gnl|CDD|237964 PRK15426, PRK15426, putative diguanylate cyclase YedQ; Provisional.
Length = 570
Score = 28.4 bits (64), Expect = 1.7
Identities = 18/98 (18%), Positives = 29/98 (29%), Gaps = 25/98 (25%)
Query: 19 LIRLAI-SNAPQGRMTLNEIYQFITHTFP----------YYREANAGWKNSIRHNLSLNK 67
L+RLA S++ R F T+P YY+ W
Sbjct: 160 LLRLAHNSSSLVERAMYVSRAGFYVSTYPTLFPSDVPTRYYQYVTQPW---FIGQS---- 212
Query: 68 CFTKVARPKDDPGKGSYWAIDYNHTADDGPSKKKVKLP 105
+ +PG+G W A + + +P
Sbjct: 213 -------QRRNPGRGVRWFTSQPDDASNTEPQVTASVP 243
>gnl|CDD|99979 cd03807, GT1_WbnK_like, This family is most closely related to the
GT1 family of glycosyltransferases. WbnK in Shigella
dysenteriae has been shown to be involved in the type 7
O-antigen biosynthesis.
Length = 365
Score = 28.0 bits (63), Expect = 1.7
Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 10/62 (16%)
Query: 84 YWAIDYNHTADDGPSKKKVKL-----PRVSPYSPVECNNSNSSSDVHNSK--PPTSISSV 136
W I +D KK +L +S + P+ NS ++++ H + PP I +
Sbjct: 108 IWGI---RHSDLDLGKKSTRLVARLRRLLSSFIPLIVANSAAAAEYHQAIGYPPKKIVVI 164
Query: 137 PN 138
PN
Sbjct: 165 PN 166
>gnl|CDD|178402 PLN02805, PLN02805, D-lactate dehydrogenase [cytochrome].
Length = 555
Score = 27.7 bits (61), Expect = 2.8
Identities = 9/38 (23%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
Query: 106 RVSPYSPVECNNSNSSSDVH-NSKPPTSISSVPNTVSF 142
R P P + ++ V + PTS SS ++
Sbjct: 13 RALPSFPKSTLDVTVTTPVKGRRRLPTSWSSSLLPLAI 50
>gnl|CDD|222953 PHA02986, PHA02986, hypothetical protein; Provisional.
Length = 141
Score = 26.8 bits (59), Expect = 3.5
Identities = 11/41 (26%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 3 ITYKTGNIKCTSSYASLIRLAISNA--PQGRMTLNEIYQFI 41
I N +SY +L R+AI+ +GR ++N + + +
Sbjct: 97 IDESLSNYFNKTSYGNLARIAITYPFDDKGRKSINILNKAL 137
>gnl|CDD|173695 cd05604, STKc_SGK3, Catalytic domain of the Protein
Serine/Threonine Kinase, Serum- and
Glucocorticoid-induced Kinase 3. Serine/Threonine
Kinases (STKs), Serum- and Glucocorticoid-induced Kinase
(SGK) subfamily, SGK3 isoform, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The SGK subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. There are three isoforms of
SGK, named SGK1, SGK2, and SGK3 (also called
cytokine-independent survival kinase CISK). SGK3 is
expressed in most tissues and is most abundant in the
embryo and adult heart and spleen. It was originally
discovered in a screen for antiapoptotic genes. It
phosphorylates and inhibits the proapoptotic proteins,
Bad and FKHRL1. SGK3 also regulates many transporters,
ion channels, and receptors. It plays a critical role in
hair follicle morphogenesis and hair cycling.
Length = 325
Score = 26.9 bits (59), Expect = 5.1
Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 6/44 (13%)
Query: 103 KLPRVSPYSPVECNNSNSSSDVHNSKPPTSISSVPNTVSFFSDP 146
K+P P++P N D+ N + +VP +V F SD
Sbjct: 266 KIP--PPFNP----NVEGPDDISNFDAVFTEETVPYSVCFSSDY 303
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.314 0.129 0.397
Gapped
Lambda K H
0.267 0.0768 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,059,914
Number of extensions: 580474
Number of successful extensions: 321
Number of sequences better than 10.0: 1
Number of HSP's gapped: 320
Number of HSP's successfully gapped: 20
Length of query: 148
Length of database: 10,937,602
Length adjustment: 88
Effective length of query: 60
Effective length of database: 7,034,450
Effective search space: 422067000
Effective search space used: 422067000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 54 (24.5 bits)