BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14923
(180 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q91ZW1|TFAM_RAT Transcription factor A, mitochondrial OS=Rattus norvegicus GN=Tfam
PE=2 SV=1
Length = 244
Score = 74.3 bits (181), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 91/178 (51%), Gaps = 20/178 (11%)
Query: 1 MALFKLTTGVFTGGNVFNLRSCLMPHLNSVTTAGLKQQTSQPLS---IPEK-------PK 50
MALF+ GV + C AG + P+S IP+ PK
Sbjct: 1 MALFRGMWGVLRTLGRTGVEMC----------AGCGGRIPSPVSLICIPKCFSSLGNYPK 50
Query: 51 KPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAKEKEIYA 110
KP++ Y +F + K ++P+ K+ E+ + ++ W+++ EAEKK E ++ E ++Y
Sbjct: 51 KPMSSYLRFSTEQLPKFKAKHPDAKVSELIRKIAAMWRELPEAEKKVYEADFKAEWKVYK 110
Query: 111 QNVKKYHDELTPEAIEFLRKEKEVKKQKKEKREMKKLFRETGKPKKPGNSFYLFIKDN 168
+ V KY ++LTP + L KE K+ KK+ + ++ GKPK+P +++ +++ ++
Sbjct: 111 EAVSKYKEQLTPSQLMGLEKEARQKRLKKKAQIKRRELILLGKPKRPRSAYNIYVSES 168
>sp|Q5D144|TFAM_PIG Transcription factor A, mitochondrial OS=Sus scrofa GN=TFAM PE=2
SV=1
Length = 246
Score = 68.2 bits (165), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 90/170 (52%), Gaps = 5/170 (2%)
Query: 1 MALFKLTTGVFT--GGNVFNLRSCLMPHLNS-VTTAGLKQQTSQPLSIPEKPKKPLTPYF 57
MAL + GV + G + +L + L S + A + + S LS PKKP+T Y
Sbjct: 1 MALLRGVWGVLSALGKSGADLCAVCGSRLRSPFSFAYVPRWFSSTLS--GFPKKPMTSYV 58
Query: 58 KFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAKEKEIYAQNVKKYH 117
+F + +NP+ K E+ K ++E W+++ ++EKK E+ Y + ++Y + V +
Sbjct: 59 RFSKEQLPIFKAQNPDAKNSELIKKIAELWRELPDSEKKIYEDAYRADWQVYKEEVNRIQ 118
Query: 118 DELTPEAIEFLRKEKEVKKQKKEKREMKKLFRETGKPKKPGNSFYLFIKD 167
++LTP + L KE K+ KK+ K+ GKPK+P +++ +FI +
Sbjct: 119 EQLTPSQMVSLEKEIMQKRLKKKALIKKRELTMLGKPKRPRSAYNIFIAE 168
>sp|P40630|TFAM_MOUSE Transcription factor A, mitochondrial OS=Mus musculus GN=Tfam PE=1
SV=2
Length = 243
Score = 67.8 bits (164), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 90/173 (52%), Gaps = 10/173 (5%)
Query: 1 MALFKLTTGVFTGGNVFNLRSCL-----MPHLNSVTTAGLKQQTSQPLSIPEKPKKPLTP 55
MALF+ V + C +P +S++ + + S S+ PKKP++
Sbjct: 1 MALFRGMWSVLKALGRTGVEMCAGCGGRIP--SSISLVCIPKCFS---SMGSYPKKPMSS 55
Query: 56 YFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAKEKEIYAQNVKK 115
Y +F + K ++P+ K+ E+ + ++ W+++ EAEKK E ++ E + Y + V K
Sbjct: 56 YLRFSTEQLPKFKAKHPDAKLSELVRKIAALWRELPEAEKKVYEADFKAEWKAYKEAVSK 115
Query: 116 YHDELTPEAIEFLRKEKEVKKQKKEKREMKKLFRETGKPKKPGNSFYLFIKDN 168
Y ++LTP + + KE ++ KK+ ++ GKPK+P +++ +++ ++
Sbjct: 116 YKEQLTPSQLMGMEKEARQRRLKKKALVKRRELILLGKPKRPRSAYNIYVSES 168
>sp|Q0II87|TFAM_BOVIN Transcription factor A, mitochondrial OS=Bos taurus GN=TFAM PE=2
SV=1
Length = 246
Score = 63.9 bits (154), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 71/124 (57%)
Query: 44 SIPEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYA 103
S+ PKKP+T Y +F + +NP+ K E+ K +++ W+++ ++EKK E+ Y
Sbjct: 45 SLSGYPKKPMTSYVRFSKEQLPIFKAQNPDAKNSELIKKIAKLWRELPDSEKKIYEDAYR 104
Query: 104 KEKEIYAQNVKKYHDELTPEAIEFLRKEKEVKKQKKEKREMKKLFRETGKPKKPGNSFYL 163
+ ++Y + + + ++LTP + L KE K+ KK+ K+ GKPK+P +++ +
Sbjct: 105 ADWQVYKEEINRIQEQLTPSQMVSLEKEIMQKRLKKKALIKKRELTMLGKPKRPRSAYNI 164
Query: 164 FIKD 167
FI +
Sbjct: 165 FIAE 168
>sp|Q00059|TFAM_HUMAN Transcription factor A, mitochondrial OS=Homo sapiens GN=TFAM PE=1
SV=1
Length = 246
Score = 63.5 bits (153), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 69/121 (57%)
Query: 49 PKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAKEKEI 108
PKKP++ Y +F + +NP+ K E+ + +++ W+++ +++KK ++ Y E ++
Sbjct: 50 PKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQV 109
Query: 109 YAQNVKKYHDELTPEAIEFLRKEKEVKKQKKEKREMKKLFRETGKPKKPGNSFYLFIKDN 168
Y + + ++ ++LTP I L KE K K++ KK GKPK+P +++ +++ +
Sbjct: 110 YKEEISRFKEQLTPSQIMSLEKEIMDKHLKRKAMTKKKELTLLGKPKRPRSAYNVYVAER 169
Query: 169 I 169
Sbjct: 170 F 170
Score = 30.8 bits (68), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 54/103 (52%), Gaps = 17/103 (16%)
Query: 43 LSIPEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEY 102
L++ KPK+P + Y + + + +P K+ K V E WK + ++EK+ L ++
Sbjct: 149 LTLLGKPKRPRSAYNVYVAERFQEAKGDSPQEKL----KTVKENWKNLSDSEKE-LYIQH 203
Query: 103 AKEKEIYAQNVKKYHDELTP---EAIEFLRKE---KEVKKQKK 139
AKE E +YH+E+ + IE RK+ + +KKQ+K
Sbjct: 204 AKEDET------RYHNEMKSWEEQMIEVGRKDLLRRTIKKQRK 240
>sp|Q4H0T5|TFAM_TRACR Transcription factor A, mitochondrial OS=Trachypithecus cristatus
GN=TFAM PE=2 SV=1
Length = 246
Score = 60.8 bits (146), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 69/119 (57%)
Query: 49 PKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAKEKEI 108
PKKP++ Y +F + NP+ K E+ + +++ W+++ +++KK ++ Y + ++
Sbjct: 50 PKKPVSSYLRFSKEQLPIFKAENPDAKPTELIRRIAKLWRELPDSKKKIYQDAYRADWQV 109
Query: 109 YAQNVKKYHDELTPEAIEFLRKEKEVKKQKKEKREMKKLFRETGKPKKPGNSFYLFIKD 167
Y + + ++ ++LTP I L KE K K++ +K + GKPK+P +++ +++ +
Sbjct: 110 YKEKISRFKEQLTPSQITSLEKEIMDKHLKRKAMTKRKELTQLGKPKRPRSAYNVYVAE 168
>sp|Q32L68|HM20B_BOVIN SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily E member 1-related OS=Bos taurus
GN=HMG20B PE=2 SV=1
Length = 317
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 45/72 (62%)
Query: 45 IPEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAK 104
+P PK P+T Y +F + R +I R+P++ E+TK++ EW K+ AEK+R +E +
Sbjct: 66 LPNGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPAEKQRYLDEAER 125
Query: 105 EKEIYAQNVKKY 116
EK+ Y + ++ Y
Sbjct: 126 EKQQYMKELRAY 137
>sp|P11873|HMGC_TETTH High mobility group protein C OS=Tetrahymena thermophila PE=1 SV=1
Length = 100
Score = 57.8 bits (138), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 49/77 (63%)
Query: 40 SQPLSIPEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLE 99
S+ S P PK+PL+ +F F+ ++ + NPN KI E+T +++E+WK +GE EKK+ E
Sbjct: 3 SKDDSKPAPPKRPLSAFFLFKQHNYEQVKKENPNAKITELTSMIAEKWKAVGEKEKKKYE 62
Query: 100 NEYAKEKEIYAQNVKKY 116
++ K Y ++++ Y
Sbjct: 63 TLQSEAKAKYEKDMQAY 79
>sp|Q9Z104|HM20B_MOUSE SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily E member 1-related OS=Mus musculus
GN=Hmg20b PE=1 SV=1
Length = 317
Score = 56.6 bits (135), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 44/73 (60%)
Query: 45 IPEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAK 104
+P PK P+T Y +F + R +I R+P++ E+TK++ EW K+ AEK+R +E K
Sbjct: 66 LPNGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPAEKQRYLDEAEK 125
Query: 105 EKEIYAQNVKKYH 117
EK+ Y + + Y
Sbjct: 126 EKQQYLKELWAYQ 138
>sp|Q9P0W2|HM20B_HUMAN SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily E member 1-related OS=Homo sapiens
GN=HMG20B PE=1 SV=1
Length = 317
Score = 56.6 bits (135), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 44/72 (61%)
Query: 45 IPEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAK 104
+P PK P+T Y +F + R +I R+P++ E+TK++ EW K+ EK+R +E +
Sbjct: 66 LPNGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPTEKQRYLDEAER 125
Query: 105 EKEIYAQNVKKY 116
EK+ Y + ++ Y
Sbjct: 126 EKQQYMKELRAY 137
>sp|Q9T012|HMG13_ARATH High mobility group B protein 13 OS=Arabidopsis thaliana GN=HMGB13
PE=2 SV=1
Length = 446
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 72/145 (49%), Gaps = 25/145 (17%)
Query: 46 PEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAKE 105
P KPK+P++ Y + + R + + N +IEV K+ EEWK + E +K + K
Sbjct: 243 PLKPKQPISAYLIYANERRAAL--KGENKSVIEVAKMAGEEWKNLSEEKKAPYDQMAKKN 300
Query: 106 KEIYAQNVKKYHDELTPEAIEFLRKEKEVKK----------QKKEKRE-MKKLFRETG-- 152
KEIY Q ++ Y EA+ ++E+E K +KKEK + + K +ET
Sbjct: 301 KEIYLQEMEGYKRTKEEEAMSQKKEEEEFMKLHKQEALQLLKKKEKTDNIIKKTKETAKN 360
Query: 153 ----------KPKKPGNSFYLFIKD 167
KPKKP +S++LF KD
Sbjct: 361 KKKNENVDPNKPKKPTSSYFLFCKD 385
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 42/72 (58%)
Query: 46 PEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAKE 105
P KPKKP + YF F R ++E +P I VT +S +W ++GE EK+ ++ A+
Sbjct: 369 PNKPKKPTSSYFLFCKDARKSVLEEHPGINNSTVTAHISLKWMELGEEEKQVYNSKAAEL 428
Query: 106 KEIYAQNVKKYH 117
E Y + V++Y+
Sbjct: 429 MEAYKKEVEEYN 440
Score = 40.0 bits (92), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 50 KKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAKEKEIY 109
K+P TPY + N++ ++NP E + ++ +WK I EKK E +Y +KE Y
Sbjct: 130 KRPSTPYILWCKDNWNEVKKQNPEADFKETSNILGAKWKGISAEEKKPYEEKYQADKEAY 189
Query: 110 AQNVKKYHDELTPEAIEFLRKEKEVK 135
Q + K E EA++ L E++ K
Sbjct: 190 LQVITKEKRER--EAMKLLDDEQKQK 213
>sp|Q6AZF8|HM20A_XENLA High mobility group protein 20A OS=Xenopus laevis GN=hmg20a PE=2
SV=1
Length = 345
Score = 54.3 bits (129), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 54/95 (56%), Gaps = 2/95 (2%)
Query: 49 PKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAKEKEI 108
PK PLT Y +F + R ++ P++ E+T++V EW K+ EK+ +E K+KE
Sbjct: 101 PKAPLTGYVRFMNERREQLRTERPDVPFPEITRIVGSEWSKLPAHEKQHYLDEAEKDKER 160
Query: 109 YAQNVKKYHDELTPEAIEFLRKEKEVKKQKKEKRE 143
Y + ++KY + T + RK K +K +++++E
Sbjct: 161 YTKELQKYQN--TDAYQTYSRKAKSRQKGRQQRQE 193
>sp|P40625|HMG_TETPY High mobility group protein OS=Tetrahymena pyriformis GN=HMG PE=1
SV=1
Length = 99
Score = 53.5 bits (127), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 45/71 (63%)
Query: 46 PEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAKE 105
P PK+PL+ +F F+ +++ + NPN KI E+T +++E+WK + E EKK+ E +
Sbjct: 8 PAPPKRPLSAFFLFKQHNYDQVKKENPNAKITELTSMIAEKWKHVTEKEKKKYEGLQQEA 67
Query: 106 KEIYAQNVKKY 116
K Y ++++ Y
Sbjct: 68 KAKYEKDMQAY 78
>sp|Q5ZKF4|HM20A_CHICK High mobility group protein 20A OS=Gallus gallus GN=HMG20A PE=2
SV=1
Length = 348
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 43/76 (56%)
Query: 42 PLSIPEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENE 101
PL PK PLT Y +F + R ++ + P + E+T+++ EW K+ EK+R +E
Sbjct: 97 PLRDSNAPKSPLTGYVRFMNERREQLRAKRPEVPFPEITRMLGNEWSKLPPEEKRRYLDE 156
Query: 102 YAKEKEIYAQNVKKYH 117
++KE Y + +++Y
Sbjct: 157 ADRDKERYMRELEQYQ 172
>sp|P40618|HMGB3_CHICK High mobility group protein B3 OS=Gallus gallus GN=HMGB3 PE=2 SV=2
Length = 202
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 39/71 (54%)
Query: 46 PEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAKE 105
P PK+P + +F F + R KI NP I I +V K + E W + + EK+ N+ AK
Sbjct: 90 PNAPKRPPSAFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLSDGEKQPYNNKAAKL 149
Query: 106 KEIYAQNVKKY 116
KE Y ++V Y
Sbjct: 150 KEKYEKDVADY 160
>sp|P25980|UBF1B_XENLA Nucleolar transcription factor 1-B OS=Xenopus laevis GN=ubtf-b PE=2
SV=1
Length = 701
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 52/74 (70%)
Query: 46 PEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAKE 105
PE PKKPLTPYF+F + R K + +P + +++TK++S+++K++ E +K + ++ +E
Sbjct: 109 PEFPKKPLTPYFRFFMEKRAKYAKLHPEMSNLDLTKILSKKYKELPEKKKMKYIQDFQRE 168
Query: 106 KEIYAQNVKKYHDE 119
K+ + +N+ K+ +E
Sbjct: 169 KQDFERNMAKFREE 182
>sp|Q9DC33|HM20A_MOUSE High mobility group protein 20A OS=Mus musculus GN=Hmg20a PE=2 SV=1
Length = 346
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 43/76 (56%)
Query: 42 PLSIPEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENE 101
PL PK PLT Y +F + R ++ + P + E+T+++ EW K+ EK+R +E
Sbjct: 95 PLRDSNAPKSPLTGYVRFMNERREQLRAKRPEVPFPEITRMLGNEWSKLPPEEKQRYLDE 154
Query: 102 YAKEKEIYAQNVKKYH 117
++KE Y + +++Y
Sbjct: 155 ADRDKERYMKELEQYQ 170
>sp|Q9NP66|HM20A_HUMAN High mobility group protein 20A OS=Homo sapiens GN=HMG20A PE=1 SV=1
Length = 347
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 43/75 (57%)
Query: 42 PLSIPEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENE 101
PL PK PLT Y +F + R ++ + P + E+T+++ EW K+ EK+R +E
Sbjct: 96 PLRDSNAPKSPLTGYVRFMNERREQLRAKRPEVPFPEITRMLGNEWSKLPPEEKQRYLDE 155
Query: 102 YAKEKEIYAQNVKKY 116
++KE Y + +++Y
Sbjct: 156 ADRDKERYMKELEQY 170
>sp|P36194|HMGB1_CHICK High mobility group protein B1 OS=Gallus gallus GN=HMGB1 PE=2 SV=2
Length = 201
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 39/71 (54%)
Query: 46 PEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAKE 105
P PK+P + +F F + R KI NP I I +V K + E W + + EK+ N+ AK
Sbjct: 89 PNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLSDGEKQPYNNKAAKL 148
Query: 106 KEIYAQNVKKY 116
KE Y ++V Y
Sbjct: 149 KEKYEKDVADY 159
>sp|Q6DIJ5|HM20A_XENTR High mobility group protein 20A OS=Xenopus tropicalis GN=hmg20a
PE=2 SV=1
Length = 345
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 54/95 (56%), Gaps = 2/95 (2%)
Query: 49 PKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAKEKEI 108
PK PLT Y +F + R ++ P++ E+T++V EW K+ EK+ +E K+KE
Sbjct: 101 PKAPLTGYVRFMNERREQLRTERPDVPFPEITRIVGSEWSKLPAHEKQHYLDEAEKDKER 160
Query: 109 YAQNVKKYHDELTPEAIEFLRKEKEVKKQKKEKRE 143
Y + +++Y + T + RK + +K +++++E
Sbjct: 161 YTKELQQYQN--TDAYQTYSRKAQSRQKGRQQRQE 193
>sp|Q969G3|SMCE1_HUMAN SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily E member 1 OS=Homo sapiens
GN=SMARCE1 PE=1 SV=2
Length = 411
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 66/124 (53%), Gaps = 9/124 (7%)
Query: 52 PLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAKEKEIYAQ 111
PL PY ++ ++ +++ NP++K+ E+ K++ W+ + + EK+ NEY EK Y +
Sbjct: 69 PLMPYMRYSRKVWDQVKASNPDLKLWEIGKIIGGMWRDLTDEEKQEYLNEYEAEKIEYNE 128
Query: 112 NVKKYHDELTPEAIEFLRKEKEVKKQKKEKREMKKLFRETGKPKKPGNSFYLFIKDNIDK 171
++K YH+ +P + ++ + + +E+ ++ E G+P Y+ I+ D
Sbjct: 129 SMKAYHN--SPAYLAYINAKSRAEAALEEESRQRQSRMEKGEP-------YMSIQPAEDP 179
Query: 172 KEYE 175
+Y+
Sbjct: 180 DDYD 183
>sp|O54941|SMCE1_MOUSE SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily E member 1 OS=Mus musculus
GN=Smarce1 PE=1 SV=1
Length = 411
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 66/124 (53%), Gaps = 9/124 (7%)
Query: 52 PLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAKEKEIYAQ 111
PL PY ++ ++ +++ NP++K+ E+ K++ W+ + + EK+ NEY EK Y +
Sbjct: 69 PLMPYMRYSRKVWDQVKASNPDLKLWEIGKIIGGMWRDLTDEEKQEYLNEYEAEKIEYNE 128
Query: 112 NVKKYHDELTPEAIEFLRKEKEVKKQKKEKREMKKLFRETGKPKKPGNSFYLFIKDNIDK 171
++K YH+ +P + ++ + + +E+ ++ E G+P Y+ I+ D
Sbjct: 129 SMKAYHN--SPAYLAYINAKSRAEAALEEESRQRQSRMEKGEP-------YMSIQPAEDP 179
Query: 172 KEYE 175
+Y+
Sbjct: 180 DDYD 183
>sp|Q32L31|HMGB3_BOVIN High mobility group protein B3 OS=Bos taurus GN=HMGB3 PE=2 SV=2
Length = 200
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 40/71 (56%)
Query: 46 PEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAKE 105
P PK+P + +F F + R KI NP I I +V K + E W + ++EK+ N+ AK
Sbjct: 90 PNAPKRPPSGFFLFCSEFRPKIKSANPGISIGDVAKKLGEMWNNLSDSEKQPYINKAAKL 149
Query: 106 KEIYAQNVKKY 116
KE Y ++V Y
Sbjct: 150 KEKYEKDVADY 160
>sp|Q4H2R2|SSRP1_CIOIN FACT complex subunit SSRP1 OS=Ciona intestinalis GN=SSRP1 PE=2 SV=1
Length = 704
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 39/71 (54%)
Query: 46 PEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAKE 105
P PK+P + YF + + R + N I + E+TKL +EWKKI EK++ E Y K
Sbjct: 551 PNAPKRPQSAYFLWLNENRGRFKAENKGISVTELTKLAGKEWKKIDPDEKQKFERMYQKS 610
Query: 106 KEIYAQNVKKY 116
K + +K+Y
Sbjct: 611 KVKFDAAMKEY 621
>sp|Q5B995|NHP6_EMENI Non-histone chromosomal protein 6 OS=Emericella nidulans (strain
FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)
GN=nhp6 PE=3 SV=1
Length = 106
Score = 50.4 bits (119), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 8/97 (8%)
Query: 24 MPHLNSVT-TAGLKQQTSQPLSIPEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKL 82
MP N T ++ + P PK+ L+ Y F R+K+ E NP I +V K+
Sbjct: 1 MPKANPTRKTKATRETGGRKKKDPNAPKRGLSAYMFFANDNRDKVREENPGISFGQVGKM 60
Query: 83 VSEEWKKIGEAEKKRLENEYAKEKEIYAQNVKKYHDE 119
+ E+WK + + E+K E++ A +K K+Y DE
Sbjct: 61 LGEKWKSLSDKERKPYEDKAAADK-------KRYEDE 90
>sp|Q56A18|SMCE1_RAT SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily E member 1 OS=Rattus norvegicus
GN=Smarce1 PE=1 SV=1
Length = 376
Score = 50.1 bits (118), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 66/124 (53%), Gaps = 9/124 (7%)
Query: 52 PLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAKEKEIYAQ 111
PL PY ++ ++ +++ NP++K+ E+ K++ W+ + + EK+ NEY EK Y +
Sbjct: 34 PLMPYMRYSRKVWDQVKASNPDLKLWEIGKIIGGMWRDLTDEEKQEYLNEYEAEKIEYNE 93
Query: 112 NVKKYHDELTPEAIEFLRKEKEVKKQKKEKREMKKLFRETGKPKKPGNSFYLFIKDNIDK 171
++K YH+ +P + ++ + + +E+ ++ E G+P Y+ I+ D
Sbjct: 94 SMKAYHN--SPAYLAYINAKSRAEAALEEESRQRQSRMEKGEP-------YMSIQPAEDP 144
Query: 172 KEYE 175
+Y+
Sbjct: 145 DDYD 148
>sp|P25977|UBF1_RAT Nucleolar transcription factor 1 OS=Rattus norvegicus GN=Ubtf PE=1
SV=1
Length = 764
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 58/85 (68%), Gaps = 1/85 (1%)
Query: 46 PEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAKE 105
P+ PKKPLTPYF+F + R K + +P + +++TK++S+++K++ E +K + ++ +E
Sbjct: 109 PDFPKKPLTPYFRFFMEKRAKYAKLHPEMSNLDLTKILSKKYKELPEKKKMKYIQDFQRE 168
Query: 106 KEIYAQNVKKYHDELTPEAIEFLRK 130
K+ + +N+ ++ ++ P+ I+ +K
Sbjct: 169 KQEFERNLARFRED-HPDLIQNAKK 192
Score = 38.5 bits (88), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 40/69 (57%), Gaps = 3/69 (4%)
Query: 47 EKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAKEK 106
EKPK+P++ F F + R ++ E P + E+T+L++ W + E +K + + A+E
Sbjct: 405 EKPKRPVSAMFIFSEEKRRQLQEERPELSESELTRLLARMWNDLSEKKKAKYK---AREA 461
Query: 107 EIYAQNVKK 115
+ AQ+ +K
Sbjct: 462 ALKAQSERK 470
>sp|P25976|UBF1_MOUSE Nucleolar transcription factor 1 OS=Mus musculus GN=Ubtf PE=1 SV=1
Length = 765
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 58/85 (68%), Gaps = 1/85 (1%)
Query: 46 PEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAKE 105
P+ PKKPLTPYF+F + R K + +P + +++TK++S+++K++ E +K + ++ +E
Sbjct: 109 PDFPKKPLTPYFRFFMEKRAKYAKLHPEMSNLDLTKILSKKYKELPEKKKMKYIQDFQRE 168
Query: 106 KEIYAQNVKKYHDELTPEAIEFLRK 130
K+ + +N+ ++ ++ P+ I+ +K
Sbjct: 169 KQEFERNLARFRED-HPDLIQNAKK 192
Score = 37.7 bits (86), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 40/69 (57%), Gaps = 3/69 (4%)
Query: 47 EKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAKEK 106
EKPK+P++ F F + R ++ E P + E+T+L++ W + E +K + + A+E
Sbjct: 405 EKPKRPVSAMFIFSEEKRRQLQEERPELSESELTRLLARMWNDLTEKKKAKYK---AREA 461
Query: 107 EIYAQNVKK 115
+ AQ+ +K
Sbjct: 462 ALKAQSERK 470
>sp|P17480|UBF1_HUMAN Nucleolar transcription factor 1 OS=Homo sapiens GN=UBTF PE=1 SV=1
Length = 764
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 58/85 (68%), Gaps = 1/85 (1%)
Query: 46 PEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAKE 105
P+ PKKPLTPYF+F + R K + +P + +++TK++S+++K++ E +K + ++ +E
Sbjct: 109 PDFPKKPLTPYFRFFMEKRAKYAKLHPEMSNLDLTKILSKKYKELPEKKKMKYIQDFQRE 168
Query: 106 KEIYAQNVKKYHDELTPEAIEFLRK 130
K+ + +N+ ++ ++ P+ I+ +K
Sbjct: 169 KQEFERNLARFRED-HPDLIQNAKK 192
Score = 38.1 bits (87), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 40/69 (57%), Gaps = 3/69 (4%)
Query: 47 EKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAKEK 106
EKPK+P++ F F + R ++ E P + E+T+L++ W + E +K + + A+E
Sbjct: 405 EKPKRPVSAMFIFSEEKRRQLQEERPELSESELTRLLARMWNDLSEKKKAKYK---AREA 461
Query: 107 EIYAQNVKK 115
+ AQ+ +K
Sbjct: 462 ALKAQSERK 470
>sp|P25979|UBF1A_XENLA Nucleolar transcription factor 1-A OS=Xenopus laevis GN=ubtf-a PE=2
SV=1
Length = 677
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 51/74 (68%)
Query: 46 PEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAKE 105
PE PKKPLTPYF+F + R K + +P + +++TK++S+++K++ E +K + ++ +E
Sbjct: 109 PEFPKKPLTPYFRFFMEKRAKYAKLHPEMSNLDLTKILSKKYKELPEKKKMKYIQDFQRE 168
Query: 106 KEIYAQNVKKYHDE 119
K + +N+ ++ +E
Sbjct: 169 KLEFERNLARFREE 182
>sp|Q9SUP7|HMGB6_ARATH High mobility group B protein 6 OS=Arabidopsis thaliana GN=HMGB6
PE=2 SV=1
Length = 456
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 39/72 (54%)
Query: 46 PEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAKE 105
P KPKKP + YF F R K+ E P VT L+S +WK++ E EK+ + AK
Sbjct: 376 PNKPKKPASSYFLFSKDERKKLTEERPGTNNATVTALISLKWKELSEEEKQVYNGKAAKL 435
Query: 106 KEIYAQNVKKYH 117
E Y + V+ Y+
Sbjct: 436 MEAYKKEVEAYN 447
Score = 47.0 bits (110), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 69/143 (48%), Gaps = 23/143 (16%)
Query: 46 PEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAKE 105
P KPK P++ + + + R + E N ++ +EV K+ EEWK + + +K E K
Sbjct: 252 PLKPKHPVSAFLVYANERRAALREENKSV--VEVAKITGEEWKNLSDKKKAPYEKVAKKN 309
Query: 106 KEIYAQNVKKYHDELTPEAI-EFLRKEKEVKKQKKEKREMKKLFRET------------- 151
KE Y Q +++Y EA+ + +E+ +K K+E +M K +T
Sbjct: 310 KETYLQAMEEYKRTKEEEALSQKKEEEELLKLHKQEALQMLKKKEKTDNLIKKEKATKKK 369
Query: 152 -------GKPKKPGNSFYLFIKD 167
KPKKP +S++LF KD
Sbjct: 370 KNENVDPNKPKKPASSYFLFSKD 392
Score = 31.2 bits (69), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 31/66 (46%)
Query: 50 KKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAKEKEIY 109
K+P + Y + ++ + NP E + ++ +WK + +KK E Y EKE Y
Sbjct: 139 KRPSSSYVLWCKDQWTEVKKENPEADFKETSNILGAKWKSLSAEDKKPYEERYQVEKEAY 198
Query: 110 AQNVKK 115
Q + K
Sbjct: 199 LQVIAK 204
>sp|Q4WY33|NHP6_ASPFU Non-histone chromosomal protein 6 OS=Neosartorya fumigata (strain
ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=nhp6
PE=3 SV=1
Length = 104
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 40/72 (55%)
Query: 46 PEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAKE 105
P PK+ L+ Y F + R+K+ E NP I +V K++ E WK + ++E++ E + A +
Sbjct: 22 PNAPKRGLSAYMFFANENRDKVREENPGISFGQVGKMLGERWKALSDSERRPYEEKAAAD 81
Query: 106 KEIYAQNVKKYH 117
K+ Y Y+
Sbjct: 82 KKRYEDEKASYN 93
>sp|O15347|HMGB3_HUMAN High mobility group protein B3 OS=Homo sapiens GN=HMGB3 PE=1 SV=4
Length = 200
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 39/71 (54%)
Query: 46 PEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAKE 105
P PK+P + +F F + R KI NP I I +V K + E W + ++EK+ + AK
Sbjct: 90 PNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLNDSEKQPYITKAAKL 149
Query: 106 KEIYAQNVKKY 116
KE Y ++V Y
Sbjct: 150 KEKYEKDVADY 160
>sp|P40626|HMGB_TETTH High mobility group protein B OS=Tetrahymena thermophila PE=1 SV=1
Length = 143
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 39/65 (60%)
Query: 45 IPEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAK 104
+P KPK+P T +F ++ ++ K P +K+ E+ +SEE+K + E EK++ E Y K
Sbjct: 14 LPSKPKRPQTGFFIYKSEVFAKRRTECPTLKVPEIVSKISEEYKALPEKEKQKYEEAYRK 73
Query: 105 EKEIY 109
EK Y
Sbjct: 74 EKATY 78
>sp|O54879|HMGB3_MOUSE High mobility group protein B3 OS=Mus musculus GN=Hmgb3 PE=2 SV=3
Length = 200
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 38/71 (53%)
Query: 46 PEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAKE 105
P PK+P + +F F + R KI NP I I +V K + E W + + EK+ + AK
Sbjct: 90 PNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLSDNEKQPYVTKAAKL 149
Query: 106 KEIYAQNVKKY 116
KE Y ++V Y
Sbjct: 150 KEKYEKDVADY 160
>sp|P33417|IXR1_YEAST Intrastrand cross-link recognition protein OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=IXR1 PE=1
SV=2
Length = 597
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 50/91 (54%), Gaps = 2/91 (2%)
Query: 47 EKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAKEK 106
+ PK+P + YF F IRN+++++ P K+ E++KL S WK++ + +KK E+
Sbjct: 359 QGPKRPSSAYFLFSMSIRNELLQQFPEAKVPELSKLASARWKELTDDQKKPFYEEFRTNW 418
Query: 107 EIYAQNVKKYHDELTPE--AIEFLRKEKEVK 135
E Y Y L P+ + F++ +E++
Sbjct: 419 EKYRVVRDAYEKTLPPKRPSGPFIQFTQEIR 449
Score = 46.6 bits (109), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 35/56 (62%)
Query: 49 PKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAK 104
PK+P P+ +F +IR +++ NP+ +IE+TK++ E W+++ A+K Y K
Sbjct: 434 PKRPSGPFIQFTQEIRPTVVKENPDKGLIEITKIIGERWRELDPAKKAEYTETYKK 489
>sp|Q4PBZ9|NHP6_USTMA Non-histone chromosomal protein 6 OS=Ustilago maydis (strain 521
/ FGSC 9021) GN=NHP6 PE=3 SV=2
Length = 99
Score = 46.6 bits (109), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 38/66 (57%)
Query: 31 TTAGLKQQTSQPLSIPEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKI 90
++ +++T++ P+ PK+PL+ Y F R ++ NP EV +L+ +WK++
Sbjct: 10 SSTSTQKRTTKAKKDPDAPKRPLSAYMFFSQDQRERVKNANPEAGFGEVGRLLGAKWKEM 69
Query: 91 GEAEKK 96
EAEKK
Sbjct: 70 SEAEKK 75
>sp|Q99PM1|TOX4_RAT TOX high mobility group box family member 4 OS=Rattus norvegicus
GN=Tox4 PE=2 SV=1
Length = 619
Score = 46.2 bits (108), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 4/86 (4%)
Query: 46 PEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAKE 105
P +P+KP++ Y F + I +NPN EV+K+V+ W +GE +K+ + +
Sbjct: 220 PNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDSLGEEQKQVYKRKTEAA 279
Query: 106 KEIYAQNVKKYHD----ELTPEAIEF 127
K+ Y + + Y D + T E +E
Sbjct: 280 KKEYLKALAAYKDNQECQATVETVEL 305
>sp|Q5R6A9|TOX4_PONAB TOX high mobility group box family member 4 OS=Pongo abelii GN=TOX4
PE=2 SV=2
Length = 621
Score = 46.2 bits (108), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 4/86 (4%)
Query: 46 PEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAKE 105
P +P+KP++ Y F + I +NPN EV+K+V+ W +GE +K+ + +
Sbjct: 220 PNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDSLGEEQKQVYKRKTEAA 279
Query: 106 KEIYAQNVKKYHD----ELTPEAIEF 127
K+ Y + + Y D + T E +E
Sbjct: 280 KKEYLKALAAYKDNQECQATVETVEL 305
>sp|Q8BU11|TOX4_MOUSE TOX high mobility group box family member 4 OS=Mus musculus GN=Tox4
PE=1 SV=3
Length = 619
Score = 46.2 bits (108), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 4/86 (4%)
Query: 46 PEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAKE 105
P +P+KP++ Y F + I +NPN EV+K+V+ W +GE +K+ + +
Sbjct: 220 PNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDSLGEEQKQVYKRKTEAA 279
Query: 106 KEIYAQNVKKYHD----ELTPEAIEF 127
K+ Y + + Y D + T E +E
Sbjct: 280 KKEYLKALAAYKDNQECQATVETVEL 305
>sp|O94842|TOX4_HUMAN TOX high mobility group box family member 4 OS=Homo sapiens GN=TOX4
PE=1 SV=1
Length = 621
Score = 46.2 bits (108), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 4/86 (4%)
Query: 46 PEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAKE 105
P +P+KP++ Y F + I +NPN EV+K+V+ W +GE +K+ + +
Sbjct: 220 PNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDSLGEEQKQVYKRKTEAA 279
Query: 106 KEIYAQNVKKYHD----ELTPEAIEF 127
K+ Y + + Y D + T E +E
Sbjct: 280 KKEYLKALAAYKDNQECQATVETVEL 305
>sp|Q02486|ABF2_YEAST ARS-binding factor 2, mitochondrial OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=ABF2 PE=1 SV=1
Length = 183
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 73/148 (49%), Gaps = 26/148 (17%)
Query: 1 MALFKLTTGVF--TGGNVFNLRSCLMPHLNSVTTAGLKQQTSQPLSIPEKPKKPLTPYFK 58
M + L T F + +FNL S L+ A + Q L I + PK+P + YF
Sbjct: 1 MNSYSLLTRSFHESSKPLFNLASTLL-------KASKRTQLRNEL-IKQGPKRPTSAYFL 52
Query: 59 FQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGE-------AEKKRLENEYAKEKEIYAQ 111
+ R++ ++ NP ++ E++K+ E+W+ + +E+K+L +EY K K
Sbjct: 53 YLQDHRSQFVKENPTLRPAEISKIAGEKWQNLEADIKEKYISERKKLYSEYQKAK----- 107
Query: 112 NVKKYHDELTPE--AIEFLRKEKEVKKQ 137
K++ ++L P+ A F++ EV+ Q
Sbjct: 108 --KEFDEKLPPKKPAGPFIKYANEVRSQ 133
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 15/61 (24%), Positives = 38/61 (62%)
Query: 49 PKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAKEKEI 108
PKKP P+ K+ ++R+++ ++P+ +++ K++ ++W+ + ++ K + EY K +
Sbjct: 116 PKKPAGPFIKYANEVRSQVFAQHPDKSQLDLMKIIGDKWQSLDQSIKDKYIQEYKKAIQE 175
Query: 109 Y 109
Y
Sbjct: 176 Y 176
>sp|Q0P5K4|TOX4_BOVIN TOX high mobility group box family member 4 OS=Bos taurus GN=TOX4
PE=2 SV=1
Length = 619
Score = 45.4 bits (106), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 39/73 (53%)
Query: 46 PEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAKE 105
P +P+KP++ Y F + I +NPN EV+K+V+ W +GE +K+ + +
Sbjct: 220 PNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDSLGEEQKQVYKRKTEAA 279
Query: 106 KEIYAQNVKKYHD 118
K+ Y + + Y D
Sbjct: 280 KKEYLKALAAYKD 292
>sp|Q05783|HMGD_DROME High mobility group protein D OS=Drosophila melanogaster GN=HmgD
PE=1 SV=1
Length = 112
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 45 IPEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAK 104
+ +KPK+PL+ Y + R I NP IK+ EV K E W+ + +K E + AK
Sbjct: 1 MSDKPKRPLSAYMLWLNSARESIKRENPGIKVTEVAKRGGELWRAM--KDKSEWEAKAAK 58
Query: 105 EKEIYAQNVKKYH 117
K+ Y + VK++
Sbjct: 59 AKDDYDRAVKEFE 71
>sp|Q6IRR0|TOX4B_XENLA TOX high mobility group box family member 4-B OS=Xenopus laevis
GN=tox4-b PE=2 SV=1
Length = 594
Score = 45.1 bits (105), Expect = 3e-04, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 46 PEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAKE 105
P +P+KPL+ Y F + I +NPN EV+K+V+ W +GE +K+ + +
Sbjct: 219 PNEPQKPLSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDSLGEEQKQVYKRKTEAA 278
Query: 106 KEIYAQNVKKYH-DELTPEAIE 126
K+ Y + + Y ++L+ A++
Sbjct: 279 KKEYLKALALYKANQLSQVAVD 300
>sp|A4QNP0|TOX4_XENTR TOX high mobility group box family member 4 OS=Xenopus tropicalis
GN=tox4 PE=2 SV=1
Length = 597
Score = 44.7 bits (104), Expect = 3e-04, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 46 PEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAKE 105
P +P+KPL+ Y F + I +NPN EV+K+V+ W +GE +K+ + +
Sbjct: 219 PNEPQKPLSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDSLGEEQKQVYKRKTEAA 278
Query: 106 KEIYAQNVKKYH-DELTPEAIE 126
K+ Y + + Y ++L+ A++
Sbjct: 279 KKEYLKALALYKANQLSQVAVD 300
>sp|O15405|TOX3_HUMAN TOX high mobility group box family member 3 OS=Homo sapiens GN=TOX3
PE=1 SV=2
Length = 576
Score = 44.7 bits (104), Expect = 3e-04, Method: Composition-based stats.
Identities = 22/75 (29%), Positives = 39/75 (52%)
Query: 46 PEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAKE 105
P +P+KP++ Y F + I +NPN EV+K+V+ W +GE +K+ + +
Sbjct: 252 PNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDSLGEEQKQVYKRKTEAA 311
Query: 106 KEIYAQNVKKYHDEL 120
K+ Y + + Y L
Sbjct: 312 KKEYLKALAAYRASL 326
>sp|Q4IQX3|NHP6_GIBZE Non-histone chromosomal protein 6 OS=Gibberella zeae (strain PH-1 /
ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=NHP6 PE=3
SV=1
Length = 101
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 37/72 (51%)
Query: 46 PEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAKE 105
P PK+ L+ Y F + R + E NP I +V KL+ E WK + E ++ E + A +
Sbjct: 21 PNAPKRGLSAYMFFANEQRENVREENPGISFGQVGKLLGERWKALNEKQRAPYEAKAAAD 80
Query: 106 KEIYAQNVKKYH 117
K+ Y + Y+
Sbjct: 81 KKRYEDEKQAYN 92
>sp|Q80W03|TOX3_MOUSE TOX high mobility group box family member 3 OS=Mus musculus GN=Tox3
PE=2 SV=1
Length = 575
Score = 44.7 bits (104), Expect = 3e-04, Method: Composition-based stats.
Identities = 22/75 (29%), Positives = 39/75 (52%)
Query: 46 PEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAKE 105
P +P+KP++ Y F + I +NPN EV+K+V+ W +GE +K+ + +
Sbjct: 251 PNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDSLGEEQKQVYKRKTEAA 310
Query: 106 KEIYAQNVKKYHDEL 120
K+ Y + + Y L
Sbjct: 311 KKEYLKALAAYRASL 325
>sp|Q6DJL0|TOX4A_XENLA TOX high mobility group box family member 4-A OS=Xenopus laevis
GN=tox4-a PE=2 SV=1
Length = 597
Score = 44.7 bits (104), Expect = 4e-04, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 46 PEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAKE 105
P +P+KPL+ Y F + I +NPN EV+K+V+ W +GE +K+ + +
Sbjct: 219 PNEPQKPLSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDSLGEEQKQVYKRKTEAA 278
Query: 106 KEIYAQNVKKYH-DELTPEAIE 126
K+ Y + + Y ++L+ A++
Sbjct: 279 KKEYLKALALYKANQLSQVAVD 300
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.132 0.370
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,538,710
Number of Sequences: 539616
Number of extensions: 3063289
Number of successful extensions: 22725
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 529
Number of HSP's successfully gapped in prelim test: 732
Number of HSP's that attempted gapping in prelim test: 18236
Number of HSP's gapped (non-prelim): 3487
length of query: 180
length of database: 191,569,459
effective HSP length: 110
effective length of query: 70
effective length of database: 132,211,699
effective search space: 9254818930
effective search space used: 9254818930
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 57 (26.6 bits)