Query psy14923
Match_columns 180
No_of_seqs 187 out of 1489
Neff 7.6
Searched_HMMs 29240
Date Fri Aug 16 15:50:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14923.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14923hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tmm_A Transcription factor A, 100.0 5.6E-33 1.9E-37 224.7 14.9 134 43-176 36-169 (238)
2 3tq6_A Transcription factor A, 100.0 5.7E-32 2E-36 215.7 16.0 131 46-176 7-137 (214)
3 2yrq_A High mobility group pro 100.0 9.9E-30 3.4E-34 196.4 12.8 116 41-177 8-125 (173)
4 2gzk_A Sex-determining region 99.9 4.6E-27 1.6E-31 179.0 10.7 111 46-177 2-112 (159)
5 2co9_A Thymus high mobility gr 99.9 4.4E-24 1.5E-28 151.6 11.7 83 39-121 8-90 (102)
6 1k99_A Upstream binding factor 99.9 1.8E-24 6E-29 152.9 8.6 83 40-122 2-84 (99)
7 2eqz_A High mobility group pro 99.9 9.4E-24 3.2E-28 145.3 11.9 77 41-117 8-86 (86)
8 1cg7_A Protein (NON histone pr 99.9 1.7E-24 5.8E-29 151.3 5.2 86 34-119 6-91 (93)
9 1hme_A High mobility group pro 99.9 1E-23 3.6E-28 142.1 8.2 76 43-118 1-76 (77)
10 2cs1_A PMS1 protein homolog 1; 99.9 2.4E-23 8.2E-28 145.1 9.8 78 44-121 3-80 (92)
11 2crj_A SWI/SNF-related matrix- 99.9 3.7E-23 1.3E-27 144.1 10.8 77 43-119 2-78 (92)
12 1wgf_A Upstream binding factor 99.9 3.4E-24 1.2E-28 148.8 5.3 82 34-115 6-87 (90)
13 2e6o_A HMG box-containing prot 99.9 3.8E-23 1.3E-27 142.6 9.0 77 41-117 10-86 (87)
14 2lhj_A High mobility group pro 99.9 4.9E-24 1.7E-28 150.0 3.9 86 34-119 8-95 (97)
15 1v64_A Nucleolar transcription 99.9 1.8E-22 6.3E-27 144.6 11.7 86 39-128 7-93 (108)
16 1hry_A Human SRY; DNA, DNA-bin 99.9 4.4E-23 1.5E-27 138.6 7.5 74 45-118 1-74 (76)
17 1aab_A High mobility group pro 99.9 2.3E-23 7.9E-28 142.4 5.5 77 43-119 2-80 (83)
18 3nm9_A HMG-D, high mobility gr 99.9 1.9E-22 6.4E-27 134.7 9.7 72 46-119 1-72 (73)
19 1wxl_A Single-strand recogniti 99.9 2.1E-22 7.3E-27 134.4 7.9 72 46-119 1-72 (73)
20 1j46_A SRY, sex-determining re 99.9 3.7E-22 1.3E-26 137.1 9.1 75 45-119 1-75 (85)
21 1ckt_A High mobility group 1 p 99.9 3.5E-22 1.2E-26 132.4 7.7 69 48-116 1-71 (71)
22 1wz6_A HMG-box transcription f 99.9 1.6E-22 5.6E-27 137.8 5.7 76 44-119 3-78 (82)
23 1v63_A Nucleolar transcription 99.9 1.9E-21 6.3E-26 137.8 11.2 85 45-131 5-89 (101)
24 3f27_D Transcription factor SO 99.9 7.5E-22 2.6E-26 134.7 8.2 75 45-119 3-77 (83)
25 4a3n_A Transcription factor SO 99.9 4.4E-22 1.5E-26 131.9 6.8 71 47-117 1-71 (71)
26 1gt0_D Transcription factor SO 99.9 9.8E-22 3.4E-26 133.3 8.4 73 47-119 1-73 (80)
27 4euw_A Transcription factor SO 99.9 1.1E-21 3.9E-26 140.0 8.9 78 42-119 23-100 (106)
28 2gzk_A Sex-determining region 99.9 4.5E-21 1.5E-25 145.7 11.4 79 40-118 80-158 (159)
29 2lef_A LEF-1 HMG, protein (lym 99.8 3E-21 1E-25 132.7 8.9 73 48-120 2-74 (86)
30 3u2b_C Transcription factor SO 99.8 2.2E-21 7.6E-26 131.1 7.9 73 47-119 1-73 (79)
31 1i11_A Transcription factor SO 99.8 1.6E-21 5.6E-26 132.6 6.1 74 46-119 2-75 (81)
32 3fgh_A Transcription factor A, 99.8 6.4E-21 2.2E-25 125.1 7.8 67 47-117 1-67 (67)
33 1l8y_A Upstream binding factor 99.8 1.2E-20 4.2E-25 130.6 9.1 73 47-120 3-75 (91)
34 2yrq_A High mobility group pro 99.8 1.9E-20 6.6E-25 144.2 10.8 80 40-119 93-172 (173)
35 2d7l_A WD repeat and HMG-box D 99.8 3.3E-20 1.1E-24 126.3 6.9 62 44-105 1-63 (81)
36 2yuk_A Myeloid/lymphoid or mix 99.8 8.6E-21 2.9E-25 131.3 -0.1 71 37-111 11-83 (90)
37 2cto_A Novel protein; high mob 99.8 2.5E-19 8.4E-24 124.9 5.8 70 43-114 5-77 (93)
38 3tq6_A Transcription factor A, 99.7 2.4E-18 8.3E-23 136.8 3.5 77 41-121 107-183 (214)
39 3tmm_A Transcription factor A, 99.7 4.4E-18 1.5E-22 137.4 2.0 77 41-121 139-215 (238)
40 1wgf_A Upstream binding factor 98.3 1.2E-07 4E-12 65.0 1.2 34 144-177 11-44 (90)
41 2eqz_A High mobility group pro 98.3 1.9E-07 6.3E-12 63.4 1.5 33 145-177 7-39 (86)
42 2yuk_A Myeloid/lymphoid or mix 98.2 1.3E-07 4.5E-12 65.0 0.1 32 146-177 15-46 (90)
43 1k99_A Upstream binding factor 98.2 3.7E-07 1.3E-11 63.6 2.2 33 145-177 2-34 (99)
44 1aab_A High mobility group pro 98.2 6E-07 2.1E-11 60.3 2.9 29 149-177 3-31 (83)
45 2lhj_A High mobility group pro 98.2 2.9E-07 9.9E-12 63.8 0.9 34 144-177 13-46 (97)
46 2co9_A Thymus high mobility gr 98.2 4.2E-07 1.4E-11 63.6 1.6 33 145-177 9-41 (102)
47 1cg7_A Protein (NON histone pr 98.2 2.8E-07 9.5E-12 63.5 0.7 34 144-177 11-44 (93)
48 1hme_A High mobility group pro 98.2 7.7E-07 2.6E-11 58.9 2.6 29 149-177 2-30 (77)
49 2e6o_A HMG box-containing prot 98.1 1.2E-06 4.1E-11 59.4 2.3 32 146-177 10-41 (87)
50 2d7l_A WD repeat and HMG-box D 98.1 2E-06 6.7E-11 57.9 3.0 28 150-177 2-29 (81)
51 2crj_A SWI/SNF-related matrix- 98.1 1.8E-06 6.3E-11 59.2 2.9 30 148-177 2-31 (92)
52 1hry_A Human SRY; DNA, DNA-bin 98.0 2.2E-06 7.6E-11 56.5 2.9 28 150-177 1-28 (76)
53 3nm9_A HMG-D, high mobility gr 98.0 2.9E-06 1E-10 55.6 3.0 26 152-177 2-27 (73)
54 1wxl_A Single-strand recogniti 98.0 3E-06 1E-10 55.5 3.0 27 151-177 1-27 (73)
55 3fgh_A Transcription factor A, 98.0 3.4E-06 1.2E-10 54.3 2.6 25 152-176 1-25 (67)
56 1v64_A Nucleolar transcription 98.0 2.1E-06 7.1E-11 60.8 1.6 29 145-173 8-37 (108)
57 2cs1_A PMS1 protein homolog 1; 97.9 6.8E-06 2.3E-10 56.3 2.9 29 149-177 3-31 (92)
58 1wz6_A HMG-box transcription f 97.9 8E-06 2.7E-10 54.6 3.0 29 149-177 3-31 (82)
59 4euw_A Transcription factor SO 97.8 1E-05 3.4E-10 57.0 2.9 31 147-177 23-53 (106)
60 1j46_A SRY, sex-determining re 97.8 1.2E-05 4.3E-10 54.1 3.1 27 151-177 2-28 (85)
61 4a3n_A Transcription factor SO 97.8 9.9E-06 3.4E-10 52.4 2.4 26 152-177 1-26 (71)
62 1ckt_A High mobility group 1 p 97.7 1.6E-05 5.5E-10 51.5 2.8 25 153-177 1-25 (71)
63 3f27_D Transcription factor SO 97.7 1.5E-05 5.3E-10 53.2 2.6 28 150-177 3-30 (83)
64 2cto_A Novel protein; high mob 97.7 1.9E-05 6.5E-10 54.4 2.9 28 149-176 6-33 (93)
65 3u2b_C Transcription factor SO 97.7 2.5E-05 8.5E-10 51.6 3.0 26 152-177 1-26 (79)
66 1i11_A Transcription factor SO 97.7 2.7E-05 9.1E-10 51.9 3.0 27 151-177 2-28 (81)
67 1gt0_D Transcription factor SO 97.6 3E-05 1E-09 51.4 3.0 26 152-177 1-26 (80)
68 2lef_A LEF-1 HMG, protein (lym 97.6 3.4E-05 1.2E-09 52.0 2.9 26 152-177 1-26 (86)
69 1v63_A Nucleolar transcription 97.3 0.00011 3.7E-09 51.2 2.6 25 150-174 5-29 (101)
70 1l8y_A Upstream binding factor 97.1 0.00027 9.2E-09 48.4 2.7 26 152-177 3-28 (91)
71 2qgu_A Probable signal peptide 69.9 4.6 0.00016 31.1 4.0 47 72-118 70-118 (211)
72 2yua_A Williams-beuren syndrom 35.0 69 0.0024 20.9 4.8 37 61-97 36-77 (99)
73 1j1d_B Troponin T, TNT; THIN f 28.6 1.4E+02 0.0047 20.3 5.4 49 59-109 29-77 (106)
74 2o37_A Protein SIS1; HSP40, J- 27.2 99 0.0034 19.8 4.5 37 61-97 27-65 (92)
75 2och_A Hypothetical protein DN 25.1 93 0.0032 18.9 3.9 37 61-97 27-65 (73)
76 3fx7_A Putative uncharacterize 24.8 1.6E+02 0.0054 19.6 5.7 37 78-114 27-66 (94)
77 1hdj_A Human HSP40, HDJ-1; mol 23.3 1.3E+02 0.0046 18.3 5.2 36 62-97 23-62 (77)
78 2dn9_A DNAJ homolog subfamily 22.7 93 0.0032 19.1 3.5 36 61-96 26-66 (79)
79 2ctq_A DNAJ homolog subfamily 21.8 1.2E+02 0.0041 20.3 4.2 40 61-100 39-83 (112)
80 2ctw_A DNAJ homolog subfamily 20.9 1.3E+02 0.0044 20.0 4.2 40 61-100 36-80 (109)
No 1
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=100.00 E-value=5.6e-33 Score=224.72 Aligned_cols=134 Identities=24% Similarity=0.521 Sum_probs=118.6
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCH
Q psy14923 43 LSIPEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAKEKEIYAQNVKKYHDELTP 122 (180)
Q Consensus 43 ~~~p~~PKrP~say~lF~~e~r~~~~~~~p~~~~~ei~k~l~~~Wk~Ls~~eK~~y~~~a~~~k~~y~~~~~~y~~~~~~ 122 (180)
..+|++||+|+|||++||+++|..++.+||++++.||+++||++|+.||++||.+|+++|+.++++|+++|..|...++|
T Consensus 36 ~~~p~~PKrP~say~lF~~e~r~~~k~~~P~~~~~eisk~lge~Wk~Ls~~EK~~y~~~A~~~k~~y~~e~~~y~~~~~p 115 (238)
T 3tmm_A 36 SVLASCPKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYKEEISRFKEQLTP 115 (238)
T ss_dssp CHHHHSCCCCCCHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCchHHHHHHHhhhhhhhcC
Q psy14923 123 EAIEFLRKEKEVKKQKKEKREMKKLFRETGKPKKPGNSFYLFIKDNIDKKEYEG 176 (180)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~k~~~kk~~k~~~~PKrP~say~lF~~e~r~~~~~~~ 176 (180)
.++..++.........++..++++..+|++.||||+|||+|||+++|..+.-+|
T Consensus 116 ~~~~~~~~~~~~k~~krk~~~kkk~~kdp~~PKrP~say~lF~~e~r~~~k~~~ 169 (238)
T 3tmm_A 116 SQIMSLEKEIMDKHLKRKAMTKKKELTLLGKPKRPRSAYNVYVAERFQEAKGDS 169 (238)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHTTTSCCSS
T ss_pred HHHHHHHHHHhhhhhhhhcccchhhhcccCCCCCCCcHHHHHHHHHHHHHhccC
Confidence 998776655544444443334456789999999999999999999998876443
No 2
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=99.98 E-value=5.7e-32 Score=215.67 Aligned_cols=131 Identities=24% Similarity=0.533 Sum_probs=116.3
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCHHHH
Q psy14923 46 PEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAKEKEIYAQNVKKYHDELTPEAI 125 (180)
Q Consensus 46 p~~PKrP~say~lF~~e~r~~~~~~~p~~~~~ei~k~l~~~Wk~Ls~~eK~~y~~~a~~~k~~y~~~~~~y~~~~~~~~~ 125 (180)
|++||+|+|||++||+++|..++.+||+++++||+++||++|++||++||.+|+++|..++++|..+|..|..+++|.++
T Consensus 7 p~~PKrP~say~lF~~~~r~~~k~~~P~~~~~eisk~lge~Wk~Ls~~EK~~y~~~A~~~k~~y~~e~~~y~~~~tp~q~ 86 (214)
T 3tq6_A 7 ASCPKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYKEEISRFKEQLTPSQI 86 (214)
T ss_dssp HHSCCCCCCHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHccCHHhhhHHHHHHHHHHHHHHHHhhhhcccCCHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCchHHHHHHHhhhhhhhcC
Q psy14923 126 EFLRKEKEVKKQKKEKREMKKLFRETGKPKKPGNSFYLFIKDNIDKKEYEG 176 (180)
Q Consensus 126 ~~~~~~~~~~~~~~~k~~~kk~~k~~~~PKrP~say~lF~~e~r~~~~~~~ 176 (180)
..++.........++..++++..+|++.||||+|||+|||++.|..+.-+|
T Consensus 87 ~~~~~~~~~~~~krk~~kkkk~~kdp~~PKrP~say~lF~~e~r~~~k~~~ 137 (214)
T 3tq6_A 87 MSLEKEIMDKHLKRKAMTKKKELTLLGKPKRPRSAYNVYVAERFQEAKGDS 137 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHTTTSSCSS
T ss_pred HHHHHHHHHHHhhhcchhhhhhhccccCcccccchhhhhHHHHHHhhccCC
Confidence 877665544443333334456789999999999999999999998875443
No 3
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.96 E-value=9.9e-30 Score=196.37 Aligned_cols=116 Identities=27% Similarity=0.475 Sum_probs=105.9
Q ss_pred CCCCCCCCCCCCCChHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy14923 41 QPLSIPEKPKKPLTPYFKFQGQIRNKIMERNPN--IKIIEVTKLVSEEWKKIGEAEKKRLENEYAKEKEIYAQNVKKYHD 118 (180)
Q Consensus 41 k~~~~p~~PKrP~say~lF~~e~r~~~~~~~p~--~~~~ei~k~l~~~Wk~Ls~~eK~~y~~~a~~~k~~y~~~~~~y~~ 118 (180)
...+||++|++|+|||+|||+++|..++.+||+ +++.||+++||++|++||++||++|+++|++++++|..+|..|..
T Consensus 8 ~~k~dp~~PKrp~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~ 87 (173)
T 2yrq_A 8 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIP 87 (173)
T ss_dssp SSSCCSSSCCCCCCHHHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHCCC
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 456899999999999999999999999999999 589999999999999999999999999999999999999999998
Q ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCchHHHHHHHhhhhhhhcCC
Q psy14923 119 ELTPEAIEFLRKEKEVKKQKKEKREMKKLFRETGKPKKPGNSFYLFIKDNIDKKEYEGK 177 (180)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~k~~~kk~~k~~~~PKrP~say~lF~~e~r~~~~~~~~ 177 (180)
..+. .++..+|++.||||+|||+|||+++|..+..+|.
T Consensus 88 ~~~~---------------------~kk~~kdp~~pKrP~saf~lf~~~~r~~~~~~~p 125 (173)
T 2yrq_A 88 PKGE---------------------TKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHP 125 (173)
T ss_dssp CCCC---------------------SSCSCCCSSSCCCCCCHHHHHHHHHHHHHHHHCS
T ss_pred hhhh---------------------hcccccCCccccCcccHHHHHHHHHHHHHHHHCC
Confidence 7641 1345679999999999999999999998876653
No 4
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=99.94 E-value=4.6e-27 Score=178.95 Aligned_cols=111 Identities=26% Similarity=0.455 Sum_probs=101.6
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCHHHH
Q psy14923 46 PEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAKEKEIYAQNVKKYHDELTPEAI 125 (180)
Q Consensus 46 p~~PKrP~say~lF~~e~r~~~~~~~p~~~~~ei~k~l~~~Wk~Ls~~eK~~y~~~a~~~k~~y~~~~~~y~~~~~~~~~ 125 (180)
|+.|+||++||++|+.+.+..|..+||++++.||+++||++|++||++||++|.++|+.++++|..+|..|.....
T Consensus 2 ~~~~Krp~~af~~~~~~~~~ki~~~~P~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~y~~~k~---- 77 (159)
T 2gzk_A 2 QDRVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKYRKG---- 77 (159)
T ss_dssp TTCCCCCCCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCSSCSCCCC----
T ss_pred cCCCCCCCcHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhhHHHhccHHHHHHHHHHHHHHHhhccccccc----
Confidence 5789999999999999999999999999999999999999999999999999999999999999999999987531
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCchHHHHHHHhhhhhhhcCC
Q psy14923 126 EFLRKEKEVKKQKKEKREMKKLFRETGKPKKPGNSFYLFIKDNIDKKEYEGK 177 (180)
Q Consensus 126 ~~~~~~~~~~~~~~~k~~~kk~~k~~~~PKrP~say~lF~~e~r~~~~~~~~ 177 (180)
+.++..+|++.||||+|||+|||++.|..+..+|.
T Consensus 78 -----------------~~kk~~kdp~~pKrp~say~lf~~~~r~~~~~~~p 112 (159)
T 2gzk_A 78 -----------------ETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHP 112 (159)
T ss_dssp -----------------CCGGGSCCTTCCCCCCCHHHHHHHHHHHHHHHHCS
T ss_pred -----------------cccccccccccccccccccchhhHhhHHHHHHhCC
Confidence 22456789999999999999999999999877664
No 5
>2co9_A Thymus high mobility group box protein TOX; TOX protein, HMG box domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.91 E-value=4.4e-24 Score=151.55 Aligned_cols=83 Identities=27% Similarity=0.497 Sum_probs=79.1
Q ss_pred cCCCCCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy14923 39 TSQPLSIPEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAKEKEIYAQNVKKYHD 118 (180)
Q Consensus 39 ~~k~~~~p~~PKrP~say~lF~~e~r~~~~~~~p~~~~~ei~k~l~~~Wk~Ls~~eK~~y~~~a~~~k~~y~~~~~~y~~ 118 (180)
..++.+||++|+||+|||+|||+++|..|+.+||++++.+|+++||++|++||+++|++|+++|++++++|..+|.+|..
T Consensus 8 ~kk~~kdp~~pKrP~say~lF~~~~r~~i~~~~P~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~Y~~ 87 (102)
T 2co9_A 8 KKKKKKDPNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDGLGEEQKQVYKKKTEAAKKEYLKQLAAYRA 87 (102)
T ss_dssp SCSSCCCCCSCCCCCCHHHHTHHHHHHHHHHHCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34677899999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hCC
Q psy14923 119 ELT 121 (180)
Q Consensus 119 ~~~ 121 (180)
.+.
T Consensus 88 ~~~ 90 (102)
T 2co9_A 88 SLV 90 (102)
T ss_dssp HHT
T ss_pred hcc
Confidence 764
No 6
>1k99_A Upstream binding factor 1; alpha-helix, L-shape, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1
Probab=99.91 E-value=1.8e-24 Score=152.87 Aligned_cols=83 Identities=28% Similarity=0.597 Sum_probs=79.4
Q ss_pred CCCCCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy14923 40 SQPLSIPEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAKEKEIYAQNVKKYHDE 119 (180)
Q Consensus 40 ~k~~~~p~~PKrP~say~lF~~e~r~~~~~~~p~~~~~ei~k~l~~~Wk~Ls~~eK~~y~~~a~~~k~~y~~~~~~y~~~ 119 (180)
.++.+||++||||+|||+|||++.|..++.+||+++++||+++||++|++||++||++|+++|++++++|..+|.+|...
T Consensus 2 kkk~kdp~~PKRP~saf~lF~~~~r~~ik~~~P~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~Y~~e~~~y~~~ 81 (99)
T 1k99_A 2 KKLKKHPDFPKKPLTPYFRFFMEKRAKYAKLHPEMSNLDLTKILSKKYKELPEKKKMKYIQDFQREKQEFERNLARFRED 81 (99)
T ss_dssp CCCCSSSSSCCCSCCHHHHHHHHHHHHHHTTCTTSCSHHHHHHHHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHGGGGGC
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCH
Q psy14923 120 LTP 122 (180)
Q Consensus 120 ~~~ 122 (180)
+++
T Consensus 82 ~P~ 84 (99)
T 1k99_A 82 HPD 84 (99)
T ss_dssp CCC
T ss_pred CCC
Confidence 763
No 7
>2eqz_A High mobility group protein B3; HMG-box domain, mobility group protein 2A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.91 E-value=9.4e-24 Score=145.35 Aligned_cols=77 Identities=27% Similarity=0.487 Sum_probs=73.7
Q ss_pred CCCCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCC--HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy14923 41 QPLSIPEKPKKPLTPYFKFQGQIRNKIMERNPNIK--IIEVTKLVSEEWKKIGEAEKKRLENEYAKEKEIYAQNVKKYH 117 (180)
Q Consensus 41 k~~~~p~~PKrP~say~lF~~e~r~~~~~~~p~~~--~~ei~k~l~~~Wk~Ls~~eK~~y~~~a~~~k~~y~~~~~~y~ 117 (180)
+..+||++||||+|||++||+++|..++.+||+++ +.||+++||++|++||++||++|+++|++++++|..+|.+|+
T Consensus 8 ~~~kdp~~PKrP~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~Y~ 86 (86)
T 2eqz_A 8 MAKGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDREMKDYG 86 (86)
T ss_dssp CSSCCSSSCCCCCCHHHHHHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCCCCCcHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 46689999999999999999999999999999986 699999999999999999999999999999999999999984
No 8
>1cg7_A Protein (NON histone protein 6 A); HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.21.1.1 PDB: 1j5n_A 1lwm_A
Probab=99.90 E-value=1.7e-24 Score=151.26 Aligned_cols=86 Identities=27% Similarity=0.474 Sum_probs=80.6
Q ss_pred ccccccCCCCCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHH
Q psy14923 34 GLKQQTSQPLSIPEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAKEKEIYAQNV 113 (180)
Q Consensus 34 ~~k~~~~k~~~~p~~PKrP~say~lF~~e~r~~~~~~~p~~~~~ei~k~l~~~Wk~Ls~~eK~~y~~~a~~~k~~y~~~~ 113 (180)
..+++..++.+||+.|+||+|||+|||+++|..++.+||++++.||+++||++|++||++||++|+++|++++++|..+|
T Consensus 6 ~~k~~~~k~~kdp~~pKrP~saf~lF~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~e~ 85 (93)
T 1cg7_A 6 EPKKRTTRKKKDPNAPKRALSAYMFFANENRDIVRSENPDITFGQVGKKLGEKWKALTPEEKQPYEAKAQADKKRYESEK 85 (93)
T ss_dssp CCCCCCCCCCCCSSCCCSCCCHHHHHHHHHTSTTTTTCTTSCHHHHTTTHHHHHHTTHHHHHHHHHHHHTTHHHHTTHHH
T ss_pred CCCcccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455567789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhhhhh
Q psy14923 114 KKYHDE 119 (180)
Q Consensus 114 ~~y~~~ 119 (180)
.+|..+
T Consensus 86 ~~Y~~~ 91 (93)
T 1cg7_A 86 ELYNAT 91 (93)
T ss_dssp HHHHHH
T ss_pred HHHHHc
Confidence 999875
No 9
>1hme_A High mobility group protein fragment-B; DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1hmf_A 1nhm_A 1nhn_A 1hsm_A 1hsn_A 1j3c_A 1j3d_A 2yqi_A
Probab=99.90 E-value=1e-23 Score=142.05 Aligned_cols=76 Identities=30% Similarity=0.571 Sum_probs=73.7
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy14923 43 LSIPEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAKEKEIYAQNVKKYHD 118 (180)
Q Consensus 43 ~~~p~~PKrP~say~lF~~e~r~~~~~~~p~~~~~ei~k~l~~~Wk~Ls~~eK~~y~~~a~~~k~~y~~~~~~y~~ 118 (180)
.+||++|+||+|||+||++++|..++.+||++++++|+++||++|++||++||++|.++|++++++|..+|.+|..
T Consensus 1 kkdp~~pKrP~saf~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~ 76 (77)
T 1hme_A 1 FKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRA 76 (77)
T ss_dssp CCCSSCCCCCCCTTHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHSCGGGSHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3789999999999999999999999999999999999999999999999999999999999999999999999975
No 10
>2cs1_A PMS1 protein homolog 1; DNA mismatch repair protein PMS1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.89 E-value=2.4e-23 Score=145.07 Aligned_cols=78 Identities=26% Similarity=0.385 Sum_probs=75.7
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhCC
Q psy14923 44 SIPEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAKEKEIYAQNVKKYHDELT 121 (180)
Q Consensus 44 ~~p~~PKrP~say~lF~~e~r~~~~~~~p~~~~~ei~k~l~~~Wk~Ls~~eK~~y~~~a~~~k~~y~~~~~~y~~~~~ 121 (180)
.+|++||||+|||++|++++|..++.+||++++.||+++||++|++||++||++|+++|++++++|..+|.+|...++
T Consensus 3 ~~p~~pKrP~say~lF~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~e~~~y~~~~~ 80 (92)
T 2cs1_A 3 SGSSGIKKPMSASALFVQDHRPQFLIENPKTSLEDATLQIEELWKTLSEEEKLKYEEKATKDLERYNSQMKRAIEQES 80 (92)
T ss_dssp CCCSSSCCCCCHHHHHHHHHHHHHHHHCCSSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHTTTHHHHHHHHHHTSTTT
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 578999999999999999999999999999999999999999999999999999999999999999999999999765
No 11
>2crj_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; structural DNA-binding protein BRAF35, DNA-bending; NMR {Mus musculus}
Probab=99.89 E-value=3.7e-23 Score=144.09 Aligned_cols=77 Identities=35% Similarity=0.606 Sum_probs=74.8
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy14923 43 LSIPEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAKEKEIYAQNVKKYHDE 119 (180)
Q Consensus 43 ~~~p~~PKrP~say~lF~~e~r~~~~~~~p~~~~~ei~k~l~~~Wk~Ls~~eK~~y~~~a~~~k~~y~~~~~~y~~~ 119 (180)
.+||++||||+|||+||++++|..++.+||++++.+|+++||++|++||+++|++|.++|++++++|..+|.+|...
T Consensus 2 ~kdp~~pKrP~~af~lF~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~Y~~~ 78 (92)
T 2crj_A 2 SSGSSGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPAEKQRYLDEAEKEKQQYLKELWAYQQS 78 (92)
T ss_dssp CCCCSSSCCCCCHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999974
No 12
>1wgf_A Upstream binding factor 1; transcription factor, DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.89 E-value=3.4e-24 Score=148.84 Aligned_cols=82 Identities=23% Similarity=0.383 Sum_probs=75.8
Q ss_pred ccccccCCCCCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHH
Q psy14923 34 GLKQQTSQPLSIPEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAKEKEIYAQNV 113 (180)
Q Consensus 34 ~~k~~~~k~~~~p~~PKrP~say~lF~~e~r~~~~~~~p~~~~~ei~k~l~~~Wk~Ls~~eK~~y~~~a~~~k~~y~~~~ 113 (180)
..+++..++.+||++|+||+|||+|||+++|..++.+||++++.||+++||++|++||++||++|+++|++++++|..+|
T Consensus 6 ~~k~k~~k~~kdp~~pKrP~say~lF~~~~r~~~k~~~P~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~ 85 (90)
T 1wgf_A 6 SGKPSQEGGKGGSEKPKRPVSAMFIFSEEKRRQLQEERPELSESELTRLLARMWNDLSEKKKAKYKAREAALKAQSERKS 85 (90)
T ss_dssp CCSSCSCCCSSCCCCCCCCCCHHHHHHHHTHHHHHHHCTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTCCCC
T ss_pred CCCCCcCcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667889999999999999999999999999999999999999999999999999999999999999999998776
Q ss_pred Hh
Q psy14923 114 KK 115 (180)
Q Consensus 114 ~~ 115 (180)
..
T Consensus 86 ~~ 87 (90)
T 1wgf_A 86 GP 87 (90)
T ss_dssp SS
T ss_pred HH
Confidence 54
No 13
>2e6o_A HMG box-containing protein 1; HMG-box domain, HMG-box transcription factor 1, high mobility group box transcription factor 1, structural genomics; NMR {Homo sapiens}
Probab=99.89 E-value=3.8e-23 Score=142.65 Aligned_cols=77 Identities=17% Similarity=0.286 Sum_probs=73.9
Q ss_pred CCCCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy14923 41 QPLSIPEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAKEKEIYAQNVKKYH 117 (180)
Q Consensus 41 k~~~~p~~PKrP~say~lF~~e~r~~~~~~~p~~~~~ei~k~l~~~Wk~Ls~~eK~~y~~~a~~~k~~y~~~~~~y~ 117 (180)
++.+||+.|+||+|||+|||+++|..++.+||++++.+|+++||++|++||++||++|+++|++++++|.+++++|+
T Consensus 10 ~~~kdp~~pKrP~~af~lf~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~~~~~~P~Yk 86 (87)
T 2e6o_A 10 VSATSPNKCKRPMNAFMLFAKKYRVEYTQMYPGKDNRAISVILGDRWKKMKNEERRMYTLEAKALAEEQKRLNPDCW 86 (87)
T ss_dssp CCCCCCSSCCCCCCHHHHHHHHTHHHHHHHCTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHCcCCC
Confidence 46689999999999999999999999999999999999999999999999999999999999999999999998875
No 14
>2lhj_A High mobility group protein homolog NHP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid; NMR {Babesia bovis}
Probab=99.89 E-value=4.9e-24 Score=149.97 Aligned_cols=86 Identities=22% Similarity=0.468 Sum_probs=80.6
Q ss_pred ccccccCCCCCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCC--HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHH
Q psy14923 34 GLKQQTSQPLSIPEKPKKPLTPYFKFQGQIRNKIMERNPNIK--IIEVTKLVSEEWKKIGEAEKKRLENEYAKEKEIYAQ 111 (180)
Q Consensus 34 ~~k~~~~k~~~~p~~PKrP~say~lF~~e~r~~~~~~~p~~~--~~ei~k~l~~~Wk~Ls~~eK~~y~~~a~~~k~~y~~ 111 (180)
..+++..++.+||++|+||+|||+|||+++|..++.+||+++ +.+|+++||++|++||++||++|+++|++++++|..
T Consensus 8 ~~k~~~~k~~kdp~~pKrP~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~ 87 (97)
T 2lhj_A 8 TGVRRPRKAKKDPNAPKRALSSYMFFAKEKRVEIIAENPEIAKDVAAIGKMIGAAWNALSDEEKKPYERMSDEDRVRYER 87 (97)
T ss_dssp SSCCCTTCTTSCCCCCCCCCCSSTHHHHGGGGGHHHHCTTSTTCSSHHHHHHHHTSSSSCSTTTSSSSHHHHHHHHHHHH
T ss_pred ccccccccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence 445556678899999999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred HHHhhhhh
Q psy14923 112 NVKKYHDE 119 (180)
Q Consensus 112 ~~~~y~~~ 119 (180)
+|.+|..+
T Consensus 88 e~~~y~~~ 95 (97)
T 2lhj_A 88 EKAEYAQR 95 (97)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 99999874
No 15
>1v64_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.88 E-value=1.8e-22 Score=144.62 Aligned_cols=86 Identities=17% Similarity=0.335 Sum_probs=80.1
Q ss_pred cCCCCCCCCCC-CCCCChHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy14923 39 TSQPLSIPEKP-KKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAKEKEIYAQNVKKYH 117 (180)
Q Consensus 39 ~~k~~~~p~~P-KrP~say~lF~~e~r~~~~~~~p~~~~~ei~k~l~~~Wk~Ls~~eK~~y~~~a~~~k~~y~~~~~~y~ 117 (180)
..++.+||+.| |||+|||++||+++|..++ ++++.||+++||++|++||++||++|+++|++++++|..+|.+|.
T Consensus 7 ~~kk~kd~~~P~KrP~say~lF~~e~r~~~k----~~~~~eisk~lg~~Wk~Ls~~eK~~Y~~~A~~~k~~Y~~e~~~Y~ 82 (108)
T 1v64_A 7 GQLKDKFDGRPTKPPPNSYSLYCAELMANMK----DVPSTERMVLCSQQWKLLSQKEKDAYHKKCDQKKKDYEVELLRFL 82 (108)
T ss_dssp CCSSCCTTTSCCCCCSSHHHHHHHHHHHHCT----TSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccCCCCCCCCCCCCHHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677899999 9999999999999999876 789999999999999999999999999999999999999999999
Q ss_pred hhCCHHHHHHH
Q psy14923 118 DELTPEAIEFL 128 (180)
Q Consensus 118 ~~~~~~~~~~~ 128 (180)
..+++++++++
T Consensus 83 ~~~~~~~r~~~ 93 (108)
T 1v64_A 83 ESLPEEEQQRV 93 (108)
T ss_dssp HHSCHHHHHHH
T ss_pred hhCCHHHHHHH
Confidence 99998887654
No 16
>1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1hrz_A*
Probab=99.88 E-value=4.4e-23 Score=138.64 Aligned_cols=74 Identities=23% Similarity=0.432 Sum_probs=70.2
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy14923 45 IPEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAKEKEIYAQNVKKYHD 118 (180)
Q Consensus 45 ~p~~PKrP~say~lF~~e~r~~~~~~~p~~~~~ei~k~l~~~Wk~Ls~~eK~~y~~~a~~~k~~y~~~~~~y~~ 118 (180)
||+.||||+|||+||++++|..++.+||++++++|+++||++|++||+++|++|.++|++++++|..++.+|+-
T Consensus 1 dp~~pkrP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~Yky 74 (76)
T 1hry_A 1 VQDRVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKY 74 (76)
T ss_dssp --CCCCCCCCHHHHHHHHHHHHHHHHCSCCSSSHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHSSSCCC
T ss_pred CcCCCCCCCCHHHHHHHHHHHHHHHHCcCCCHHHHHHHHHhHHHhCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999998864
No 17
>1aab_A High mobility group protein; HMG-BOX, DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1
Probab=99.88 E-value=2.3e-23 Score=142.39 Aligned_cols=77 Identities=26% Similarity=0.469 Sum_probs=73.6
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCC--HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy14923 43 LSIPEKPKKPLTPYFKFQGQIRNKIMERNPNIK--IIEVTKLVSEEWKKIGEAEKKRLENEYAKEKEIYAQNVKKYHDE 119 (180)
Q Consensus 43 ~~~p~~PKrP~say~lF~~e~r~~~~~~~p~~~--~~ei~k~l~~~Wk~Ls~~eK~~y~~~a~~~k~~y~~~~~~y~~~ 119 (180)
.+||++||||+|||++||+++|..++.+||+++ +.+|+++||++|++||++||++|+++|++++++|..+|.+|...
T Consensus 2 kkdp~~PKrP~say~lF~~~~r~~~~~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~~ 80 (83)
T 1aab_A 2 KGDPKKPRGKMSSYAFFVQTSREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPP 80 (83)
T ss_dssp CCCTTCCCCCCCHHHHHHHHHHHHHTTSCTTTCCCSSSSHHHHHHHHTTSCTTHHHHHHHHHHHHHHHHHHHTTTCCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 379999999999999999999999999999986 59999999999999999999999999999999999999999875
No 18
>3nm9_A HMG-D, high mobility group protein D; DNA bending, non-sequence-specific, HMG chromosomal protein; HET: DNA; 2.85A {Drosophila melanogaster} SCOP: a.21.1.1 PDB: 1e7j_A* 1hma_A 1qrv_A*
Probab=99.88 E-value=1.9e-22 Score=134.69 Aligned_cols=72 Identities=35% Similarity=0.610 Sum_probs=69.5
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy14923 46 PEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAKEKEIYAQNVKKYHDE 119 (180)
Q Consensus 46 p~~PKrP~say~lF~~e~r~~~~~~~p~~~~~ei~k~l~~~Wk~Ls~~eK~~y~~~a~~~k~~y~~~~~~y~~~ 119 (180)
+++||||+|||+|||+++|..++.+||+++++||+++||++|++||+ |++|+++|++++++|.++|++|.++
T Consensus 1 s~~PKrP~say~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~--K~~y~~~A~~~k~~y~~~~~~Y~~k 72 (73)
T 3nm9_A 1 SDKPKRPLSAYALWLNSARESIKRENPGIKVTEVAKRGGELWRAMKD--KSEWEAKAAKAKDDYDRAVKEFEAN 72 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHCSC--CHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CccCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcCCc--hHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 47899999999999999999999999999999999999999999998 9999999999999999999999864
No 19
>1wxl_A Single-strand recognition protein; FACT, SSRP1, HMG, DNA binding protein; NMR {Drosophila melanogaster}
Probab=99.87 E-value=2.1e-22 Score=134.43 Aligned_cols=72 Identities=31% Similarity=0.595 Sum_probs=69.7
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy14923 46 PEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAKEKEIYAQNVKKYHDE 119 (180)
Q Consensus 46 p~~PKrP~say~lF~~e~r~~~~~~~p~~~~~ei~k~l~~~Wk~Ls~~eK~~y~~~a~~~k~~y~~~~~~y~~~ 119 (180)
|++||||+|||++|++++|..++.+||+++++||+++||++|++| ++|++|+++|++++++|..+|.+|..+
T Consensus 1 P~~pKrP~say~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~l--~eK~~y~~~A~~~k~~y~~e~~~Y~~~ 72 (73)
T 1wxl_A 1 SHMPKRATTAFMLWLNDTRESIKRENPGIKVTEIAKKGGEMWKEL--KDKSKWEDAAAKDKQRYHDEMRNYKPE 72 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTC--TTHHHHHHHHHHHHHHHHTTTGGGTTC
T ss_pred CccCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhh--HhhHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 689999999999999999999999999999999999999999999 889999999999999999999999864
No 20
>1j46_A SRY, sex-determining region Y protein; MALE sex determining factor, SRY, sex-reversal mutation; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1j47_A
Probab=99.87 E-value=3.7e-22 Score=137.07 Aligned_cols=75 Identities=23% Similarity=0.425 Sum_probs=72.6
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy14923 45 IPEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAKEKEIYAQNVKKYHDE 119 (180)
Q Consensus 45 ~p~~PKrP~say~lF~~e~r~~~~~~~p~~~~~ei~k~l~~~Wk~Ls~~eK~~y~~~a~~~k~~y~~~~~~y~~~ 119 (180)
.|+.|+||+|||+|||+++|..++.+||++++++|+++||++|++||++||++|.++|++++++|..++.+|...
T Consensus 1 ~p~~pKRP~~af~lf~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Yk~~ 75 (85)
T 1j46_A 1 MQDRVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKYR 75 (85)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCCCC
T ss_pred CcCcCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCcccccC
Confidence 378999999999999999999999999999999999999999999999999999999999999999999999874
No 21
>1ckt_A High mobility group 1 protein; high-mobility group domain, BENT DNA, protein-drug-DNA compl regulation-DNA complex; HET: DNA 5IU; 2.50A {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1j3x_A
Probab=99.87 E-value=3.5e-22 Score=132.44 Aligned_cols=69 Identities=28% Similarity=0.536 Sum_probs=66.5
Q ss_pred CCCCCCChHHHHHHHHHHHHHHhCCCCCH--HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14923 48 KPKKPLTPYFKFQGQIRNKIMERNPNIKI--IEVTKLVSEEWKKIGEAEKKRLENEYAKEKEIYAQNVKKY 116 (180)
Q Consensus 48 ~PKrP~say~lF~~e~r~~~~~~~p~~~~--~ei~k~l~~~Wk~Ls~~eK~~y~~~a~~~k~~y~~~~~~y 116 (180)
+||||+|||++|++++|..++.+||++++ ++|+++||++|++||+++|++|.++|++++++|..+|.+|
T Consensus 1 kPKrP~say~~F~~~~r~~~~~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~Y 71 (71)
T 1ckt_A 1 KPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTY 71 (71)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHTCCTTTSHHHHHHHHHHHHHHHHHHTTC
T ss_pred CcCCCCCHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 59999999999999999999999999965 9999999999999999999999999999999999999876
No 22
>1wz6_A HMG-box transcription factor BBX; bobby SOX homolog, HMG_BOX domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative; NMR {Mus musculus}
Probab=99.86 E-value=1.6e-22 Score=137.82 Aligned_cols=76 Identities=16% Similarity=0.358 Sum_probs=73.2
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy14923 44 SIPEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAKEKEIYAQNVKKYHDE 119 (180)
Q Consensus 44 ~~p~~PKrP~say~lF~~e~r~~~~~~~p~~~~~ei~k~l~~~Wk~Ls~~eK~~y~~~a~~~k~~y~~~~~~y~~~ 119 (180)
.++++|+||+|||+||++++|..++.+||++++.+|+++||++|++||++||++|.++|++++++|..+|.+|...
T Consensus 3 ~~~~~pkrP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~yk~~ 78 (82)
T 1wz6_A 3 SGSSGARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAVLDPKEKQKYTDMAKEYKDAFMKANPGYRSG 78 (82)
T ss_dssp SSCCCSCCCCCHHHHHHHHHHHHHHHHCSSSCTTHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHCCSCSSCCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHhHHhhcC
Confidence 5789999999999999999999999999999999999999999999999999999999999999999999999764
No 23
>1v63_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.86 E-value=1.9e-21 Score=137.80 Aligned_cols=85 Identities=14% Similarity=0.307 Sum_probs=76.9
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCHHH
Q psy14923 45 IPEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAKEKEIYAQNVKKYHDELTPEA 124 (180)
Q Consensus 45 ~p~~PKrP~say~lF~~e~r~~~~~~~p~~~~~ei~k~l~~~Wk~Ls~~eK~~y~~~a~~~k~~y~~~~~~y~~~~~~~~ 124 (180)
...+||||+|||++||++++. ..+++++++.||+++||++|++|+++||++|+++|++++++|..+|.+|...+++++
T Consensus 5 ~~~~PKrP~say~lF~~e~~~--~p~~~~~~~~eisK~lge~Wk~ls~~eK~~Y~~~A~~~k~~Y~~e~~~Y~~~~~~~~ 82 (101)
T 1v63_A 5 SSGPKKPPMNGYQKFSQELLS--NGELNHLPLKERMVEIGSRWQRISQSQKEHYKKLAEEQQRQYKVHLDLWVKSLSPQD 82 (101)
T ss_dssp CCSSCCCCSSSHHHHHHHHHH--HCTTTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTH
T ss_pred CCCCCCCCCCHHHHHHHHHHh--CCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHH
Confidence 457999999999999999975 235566889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q psy14923 125 IEFLRKE 131 (180)
Q Consensus 125 ~~~~~~~ 131 (180)
+.++...
T Consensus 83 ~~~~~~~ 89 (101)
T 1v63_A 83 RAAYKEY 89 (101)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8877654
No 24
>3f27_D Transcription factor SOX-17; protein-DNA complex, HMG domain, endodermal, activator, DNA- nucleus, transcription regulation, transcrip complex; HET: DNA; 2.75A {Mus musculus} SCOP: a.21.1.1 PDB: 2yul_A
Probab=99.86 E-value=7.5e-22 Score=134.71 Aligned_cols=75 Identities=19% Similarity=0.451 Sum_probs=69.4
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy14923 45 IPEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAKEKEIYAQNVKKYHDE 119 (180)
Q Consensus 45 ~p~~PKrP~say~lF~~e~r~~~~~~~p~~~~~ei~k~l~~~Wk~Ls~~eK~~y~~~a~~~k~~y~~~~~~y~~~ 119 (180)
.++.|+||+|||+|||+++|..++.+||++++++|+++||++|++||++||++|+++|++++++|..++++|+-.
T Consensus 3 ~~~~pKrP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~Yky~ 77 (83)
T 3f27_D 3 FTSRIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALTLAEKRPFVEEAERLRVQHMQDHPNYKYR 77 (83)
T ss_dssp ----CCCCCCHHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHCCCCeeC
Confidence 467899999999999999999999999999999999999999999999999999999999999999999999864
No 25
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=99.86 E-value=4.4e-22 Score=131.85 Aligned_cols=71 Identities=20% Similarity=0.465 Sum_probs=63.4
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy14923 47 EKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAKEKEIYAQNVKKYH 117 (180)
Q Consensus 47 ~~PKrP~say~lF~~e~r~~~~~~~p~~~~~ei~k~l~~~Wk~Ls~~eK~~y~~~a~~~k~~y~~~~~~y~ 117 (180)
+.||||+|||+||++++|..++.+||++++++|+++||++|++||+++|++|+++|++++++|..++++|+
T Consensus 1 gk~krP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~YK 71 (71)
T 4a3n_A 1 GSIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALTLAEKRPFVEEAERLRVQHMQDHPNYK 71 (71)
T ss_dssp ----CCCCHHHHHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHTTCC---
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHCcCcC
Confidence 46899999999999999999999999999999999999999999999999999999999999999998884
No 26
>1gt0_D Transcription factor SOX-2; POU factors, SOX proteins; 2.6A {Mus musculus} SCOP: a.21.1.1 PDB: 2le4_A 1o4x_B
Probab=99.86 E-value=9.8e-22 Score=133.30 Aligned_cols=73 Identities=22% Similarity=0.485 Sum_probs=70.6
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy14923 47 EKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAKEKEIYAQNVKKYHDE 119 (180)
Q Consensus 47 ~~PKrP~say~lF~~e~r~~~~~~~p~~~~~ei~k~l~~~Wk~Ls~~eK~~y~~~a~~~k~~y~~~~~~y~~~ 119 (180)
+.|+||+|||+||++++|..++.+||++++.+|+++||++|++||++||++|.++|++++++|..+|++|...
T Consensus 1 ~~pkrP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Yk~~ 73 (80)
T 1gt0_D 1 DRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEAKRLRALHMKEHPDYKYR 73 (80)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHTTSTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCCCC
T ss_pred CcCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCcccccC
Confidence 4799999999999999999999999999999999999999999999999999999999999999999999864
No 27
>4euw_A Transcription factor SOX-9; protein-DNA complex, HMG domain, activator, DNA-binding, NUC transcription; HET: DNA; 2.77A {Homo sapiens}
Probab=99.86 E-value=1.1e-21 Score=140.01 Aligned_cols=78 Identities=17% Similarity=0.372 Sum_probs=71.0
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy14923 42 PLSIPEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAKEKEIYAQNVKKYHDE 119 (180)
Q Consensus 42 ~~~~p~~PKrP~say~lF~~e~r~~~~~~~p~~~~~ei~k~l~~~Wk~Ls~~eK~~y~~~a~~~k~~y~~~~~~y~~~ 119 (180)
..++|+.|+||+|||+|||+++|..++.++|++++.+|+++||++|++||++||++|+++|++++++|..++++|+-.
T Consensus 23 ~~k~~~~pKRP~naf~lF~~~~r~~~k~~~P~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~Yky~ 100 (106)
T 4euw_A 23 SSKNKPHVKRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGKLWRLLNESEKRPFVEEAERLRVQHKKDHPDYKYQ 100 (106)
T ss_dssp -----CCCCCCCCHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHCTTCCC-
T ss_pred ccCCCCcCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHhhhcCcC
Confidence 457789999999999999999999999999999999999999999999999999999999999999999999999864
No 28
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=99.85 E-value=4.5e-21 Score=145.72 Aligned_cols=79 Identities=29% Similarity=0.554 Sum_probs=75.9
Q ss_pred CCCCCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy14923 40 SQPLSIPEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAKEKEIYAQNVKKYHD 118 (180)
Q Consensus 40 ~k~~~~p~~PKrP~say~lF~~e~r~~~~~~~p~~~~~ei~k~l~~~Wk~Ls~~eK~~y~~~a~~~k~~y~~~~~~y~~ 118 (180)
.++.+||+.||||+|||++||+++|..++.+||++++++|+++||++|++||+++|++|+++|++++++|..+|.+|..
T Consensus 80 kk~~kdp~~pKrp~say~lf~~~~r~~~~~~~p~~~~~ei~k~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~y~~ 158 (159)
T 2gzk_A 80 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRA 158 (159)
T ss_dssp GGGSCCTTCCCCCCCHHHHHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cccccccccccccccccchhhHhhHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3567899999999999999999999999999999999999999999999999999999999999999999999999975
No 29
>2lef_A LEF-1 HMG, protein (lymphoid enhancer-binding factor); LEF1, HMG, TCR-A, transcription factor; HET: DNA; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.85 E-value=3e-21 Score=132.69 Aligned_cols=73 Identities=14% Similarity=0.322 Sum_probs=70.5
Q ss_pred CCCCCCChHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhC
Q psy14923 48 KPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAKEKEIYAQNVKKYHDEL 120 (180)
Q Consensus 48 ~PKrP~say~lF~~e~r~~~~~~~p~~~~~ei~k~l~~~Wk~Ls~~eK~~y~~~a~~~k~~y~~~~~~y~~~~ 120 (180)
.|+||+|||+||++++|..++.+||++++++|+++||++|++||++||++|.++|++++++|..+|++|....
T Consensus 2 ~pKRP~naf~lf~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Yk~~p 74 (86)
T 2lef_A 2 HIKKPLNAFMLYMKEMRANVVAESTLKESAAINQILGRRWHALSREEQAKYYELARKERQLHMQLYPGWSARD 74 (86)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHSTTCCSCS
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHcccccCCC
Confidence 6899999999999999999999999999999999999999999999999999999999999999999998643
No 30
>3u2b_C Transcription factor SOX-4; HMG domain, transcriptional regulation, transcription-DNA CO; HET: DNA; 2.40A {Mus musculus} SCOP: a.21.1.1
Probab=99.85 E-value=2.2e-21 Score=131.11 Aligned_cols=73 Identities=21% Similarity=0.408 Sum_probs=70.3
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy14923 47 EKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAKEKEIYAQNVKKYHDE 119 (180)
Q Consensus 47 ~~PKrP~say~lF~~e~r~~~~~~~p~~~~~ei~k~l~~~Wk~Ls~~eK~~y~~~a~~~k~~y~~~~~~y~~~ 119 (180)
+.||||+|||+|||+++|..++.+||++++++|+++||++|++||++||++|+++|++++++|..++++|+-.
T Consensus 1 G~iKRP~naf~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~p~Yky~ 73 (79)
T 3u2b_C 1 GHIKRPMNAFMVWSQIERRKIMEQSPDMHNAEISKRLGKRWKLLKDSDKIPFIQEAERLRLKHMADYPDYKYR 73 (79)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHTTSTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHSSSCCCC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCCCCeeC
Confidence 4689999999999999999999999999999999999999999999999999999999999999999999863
No 31
>1i11_A Transcription factor SOX-5; HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein, DNA sequence specific, testis determining.; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.84 E-value=1.6e-21 Score=132.57 Aligned_cols=74 Identities=19% Similarity=0.398 Sum_probs=68.8
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy14923 46 PEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAKEKEIYAQNVKKYHDE 119 (180)
Q Consensus 46 p~~PKrP~say~lF~~e~r~~~~~~~p~~~~~ei~k~l~~~Wk~Ls~~eK~~y~~~a~~~k~~y~~~~~~y~~~ 119 (180)
++.|+||+|||+||++++|..++.+||++++.+|+++||++|++||++||++|.++|++++++|..++++|.-.
T Consensus 2 ~~~pkRP~naf~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~~~~~~p~Yky~ 75 (81)
T 1i11_A 2 SPHIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKAMTNLEKQPYYEEQARLSKQHLEKYPDYKYK 75 (81)
T ss_dssp -CCSCCSCCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHTTSCSGGGHHHHHHHHHHHHHHHTTCSCC---
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhhhhCCHHHHHHHHHHHHHHHHHHHHHCCCCeec
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999863
No 32
>3fgh_A Transcription factor A, mitochondrial; HMG domain, mitochondrial transcription, activator, DNA- binding, mitochondrion, phosphoprotein; 1.35A {Homo sapiens}
Probab=99.84 E-value=6.4e-21 Score=125.13 Aligned_cols=67 Identities=24% Similarity=0.440 Sum_probs=62.6
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy14923 47 EKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAKEKEIYAQNVKKYH 117 (180)
Q Consensus 47 ~~PKrP~say~lF~~e~r~~~~~~~p~~~~~ei~k~l~~~Wk~Ls~~eK~~y~~~a~~~k~~y~~~~~~y~ 117 (180)
+.||||+|||++||+++|..++..|| ++|+++||++|++||++||.+|+++|++++++|..+|.+|.
T Consensus 1 g~PKrP~say~~F~~~~r~~~k~~~p----~ei~k~lg~~Wk~ls~~eK~~y~~~A~~~k~~Y~~e~~~y~ 67 (67)
T 3fgh_A 1 GKPKRPRSAYNVYVAERFQEAKGDSP----QEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWA 67 (67)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSSSH----HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CcCCCCCCHHHHHHHHHHHHHHhcCH----HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 57999999999999999999986665 79999999999999999999999999999999999999883
No 33
>1l8y_A Upstream binding factor 1; HUBF, HMG box 5, DNA binding domain, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1l8z_A 2hdz_A
Probab=99.83 E-value=1.2e-20 Score=130.57 Aligned_cols=73 Identities=15% Similarity=0.261 Sum_probs=70.7
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhC
Q psy14923 47 EKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAKEKEIYAQNVKKYHDEL 120 (180)
Q Consensus 47 ~~PKrP~say~lF~~e~r~~~~~~~p~~~~~ei~k~l~~~Wk~Ls~~eK~~y~~~a~~~k~~y~~~~~~y~~~~ 120 (180)
+.|+||+|||++|+++.|..++.++|+ ++++|++.||++|++||++||++|+++|++++++|+++|.+|....
T Consensus 3 ~kPKrP~SAy~lf~~~~r~~~k~~~p~-~~~evsK~lGe~Wk~ls~~eK~pye~kA~~dK~rYekEm~~Y~~~~ 75 (91)
T 1l8y_A 3 KLPESPKRAEEIWQQSVIGDYLARFKN-DRVKALKAMEMTWNNMEKKEKLMWIKKAAEDQKRYERELSEMRAPP 75 (91)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHHTTS-THHHHHHHHHHHHHTTGGGHHHHHHHHHHHHHHHHHHHHHTTSCGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 689999999999999999999999999 9999999999999999999999999999999999999999998754
No 34
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=1.9e-20 Score=144.17 Aligned_cols=80 Identities=29% Similarity=0.552 Sum_probs=76.5
Q ss_pred CCCCCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy14923 40 SQPLSIPEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAKEKEIYAQNVKKYHDE 119 (180)
Q Consensus 40 ~k~~~~p~~PKrP~say~lF~~e~r~~~~~~~p~~~~~ei~k~l~~~Wk~Ls~~eK~~y~~~a~~~k~~y~~~~~~y~~~ 119 (180)
.++.+||+.|+||+|||+|||+++|..++.+||++++.+|+++||++|++||+++|++|+++|++++++|..+|.+|...
T Consensus 93 kk~~kdp~~pKrP~saf~lf~~~~r~~~~~~~p~~~~~ei~k~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~y~~k 172 (173)
T 2yrq_A 93 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAK 172 (173)
T ss_dssp SCSCCCSSSCCCCCCHHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred cccccCCccccCcccHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35667999999999999999999999999999999999999999999999999999999999999999999999999864
No 35
>2d7l_A WD repeat and HMG-box DNA binding protein 1; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=3.3e-20 Score=126.31 Aligned_cols=62 Identities=18% Similarity=0.272 Sum_probs=59.7
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Q psy14923 44 SIPEKPKKPLTPYFKFQGQIRNKIMERNPNIK-IIEVTKLVSEEWKKIGEAEKKRLENEYAKE 105 (180)
Q Consensus 44 ~~p~~PKrP~say~lF~~e~r~~~~~~~p~~~-~~ei~k~l~~~Wk~Ls~~eK~~y~~~a~~~ 105 (180)
++++.||||+|||+|||+++|..|+.+||+++ ++||+++||++|++||++||++|+++|+.+
T Consensus 1 ~~~~~PKRP~say~lF~~e~R~~ik~~~P~~~~~~eisK~lge~Wk~ls~eeK~~y~~~A~~d 63 (81)
T 2d7l_A 1 GSSGSSGRPKTGFQMWLEENRSNILSDNPDFSDEADIIKEGMIRFRVLSTEERKVWANKAKGE 63 (81)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHHHCTTCCSHHHHHHHHHHHHSSSCHHHHHHHHHHTTSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999998 999999999999999999999999999887
No 36
>2yuk_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=99.78 E-value=8.6e-21 Score=131.29 Aligned_cols=71 Identities=8% Similarity=0.089 Sum_probs=65.4
Q ss_pred cccCCCCCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCC--HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHH
Q psy14923 37 QQTSQPLSIPEKPKKPLTPYFKFQGQIRNKIMERNPNIK--IIEVTKLVSEEWKKIGEAEKKRLENEYAKEKEIYAQ 111 (180)
Q Consensus 37 ~~~~k~~~~p~~PKrP~say~lF~~e~r~~~~~~~p~~~--~~ei~k~l~~~Wk~Ls~~eK~~y~~~a~~~k~~y~~ 111 (180)
+...++.+||++||||+|||+|||+++|.+|+.+||+++ ++||+ ++|++|+++||++|+++|++++++|..
T Consensus 11 ~~~~k~~kDpnaPKRp~sAf~lf~~e~R~kik~enP~~s~~~~eIs----e~Wk~ls~eeK~pY~~kA~~~K~~h~~ 83 (90)
T 2yuk_A 11 RSTLKWEKEEALGEMATVAPVLYTNINFPNLKEEFPDWTTRVKQIA----KLWRKASSQERAPYVQKARDNRAALRI 83 (90)
T ss_dssp CCHHHHHHHHHHGGGCSSSHHHHHHHHCTTHHHHCCSHHHHHHHHH----HHHHHSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhccCCCCCCCCCccHHHHHHHHhHHHHHHHCcCccchHHHHH----HHHHcCCHHHHHHHHHHHHHHHHHHHh
Confidence 334566689999999999999999999999999999999 99988 999999999999999999999999864
No 37
>2cto_A Novel protein; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=2.5e-19 Score=124.87 Aligned_cols=70 Identities=16% Similarity=0.246 Sum_probs=65.5
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCCHHHHHHHH---HHHhhcCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy14923 43 LSIPEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLV---SEEWKKIGEAEKKRLENEYAKEKEIYAQNVK 114 (180)
Q Consensus 43 ~~~p~~PKrP~say~lF~~e~r~~~~~~~p~~~~~ei~k~l---~~~Wk~Ls~~eK~~y~~~a~~~k~~y~~~~~ 114 (180)
..+++.||||+|||++||+++|.+++.+ +++++||+++| |++|++|+++||++|+++|++++++|.+++.
T Consensus 5 ~~~~~~PKRP~sAf~lF~~e~R~~ik~e--~~~~~eisK~l~~cGe~Wk~ls~eEK~pYe~~A~~~K~~y~kd~~ 77 (93)
T 2cto_A 5 SSGMPNRKASRNAYYFFVQEKIPELRRR--GLPVARVADAIPYCSSDWALLREEEKEKYAEMAREWRAAQGKDPG 77 (93)
T ss_dssp CCCCCCCCSSCCHHHHHHHTTHHHHHHH--TCCCSSHHHHTGGGHHHHHHSCHHHHHHHHHHHHHHHHHHHHCSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhcccc
Confidence 3567999999999999999999999988 79999999999 9999999999999999999999999988764
No 38
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=99.71 E-value=2.4e-18 Score=136.83 Aligned_cols=77 Identities=21% Similarity=0.403 Sum_probs=70.2
Q ss_pred CCCCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhC
Q psy14923 41 QPLSIPEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAKEKEIYAQNVKKYHDEL 120 (180)
Q Consensus 41 k~~~~p~~PKrP~say~lF~~e~r~~~~~~~p~~~~~ei~k~l~~~Wk~Ls~~eK~~y~~~a~~~k~~y~~~~~~y~~~~ 120 (180)
+..+||+.||||+|||++||+++|..++.++ +.+|+++||++|++||+++|++|+++|++++++|..+|.+|...+
T Consensus 107 k~~kdp~~PKrP~say~lF~~e~r~~~k~~~----p~ei~k~lg~~Wk~ls~~eK~~Y~~~A~~~k~~Y~~e~~~y~~~~ 182 (214)
T 3tq6_A 107 KELTLLGKPKRPRSAYNVYVAERFQEAKGDS----PQEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWEEQM 182 (214)
T ss_dssp HHHHHTTCCCCCCCHHHHHHHHHTTTSSCSS----HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhccccCcccccchhhhhHHHHHHhhccCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3457899999999999999999998886554 459999999999999999999999999999999999999999976
Q ss_pred C
Q psy14923 121 T 121 (180)
Q Consensus 121 ~ 121 (180)
+
T Consensus 183 ~ 183 (214)
T 3tq6_A 183 I 183 (214)
T ss_dssp H
T ss_pred c
Confidence 4
No 39
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=99.69 E-value=4.4e-18 Score=137.35 Aligned_cols=77 Identities=22% Similarity=0.447 Sum_probs=70.2
Q ss_pred CCCCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhC
Q psy14923 41 QPLSIPEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAKEKEIYAQNVKKYHDEL 120 (180)
Q Consensus 41 k~~~~p~~PKrP~say~lF~~e~r~~~~~~~p~~~~~ei~k~l~~~Wk~Ls~~eK~~y~~~a~~~k~~y~~~~~~y~~~~ 120 (180)
+..+||+.||||+|||+|||+++|..++.+|| .+|+++||++|++|++++|++|+++|++++++|..+|.+|...+
T Consensus 139 k~~kdp~~PKrP~say~lF~~e~r~~~k~~~p----~ei~k~lg~~Wk~ls~~eK~~Y~~~A~~~k~~Y~~e~~~y~~k~ 214 (238)
T 3tmm_A 139 KELTLLGKPKRPRSAYNVYVAERFQEAKGDSP----QEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWEEQM 214 (238)
T ss_dssp HHHHHTTCCCCCCCHHHHHHHHHTTTSCCSSH----HHHHHHHHHHHHTCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcccCCCCCCCcHHHHHHHHHHHHHhccCH----HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34578999999999999999999988865554 59999999999999999999999999999999999999999976
Q ss_pred C
Q psy14923 121 T 121 (180)
Q Consensus 121 ~ 121 (180)
.
T Consensus 215 ~ 215 (238)
T 3tmm_A 215 I 215 (238)
T ss_dssp H
T ss_pred c
Confidence 3
No 40
>1wgf_A Upstream binding factor 1; transcription factor, DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=98.32 E-value=1.2e-07 Score=65.00 Aligned_cols=34 Identities=18% Similarity=0.300 Sum_probs=29.9
Q ss_pred HhhhhhccCCCCCCCchHHHHHHHhhhhhhhcCC
Q psy14923 144 MKKLFRETGKPKKPGNSFYLFIKDNIDKKEYEGK 177 (180)
Q Consensus 144 ~kk~~k~~~~PKrP~say~lF~~e~r~~~~~~~~ 177 (180)
.++..+|++.||||+|||+|||+++|..+..+|.
T Consensus 11 ~~k~~kdp~~pKrP~say~lF~~~~r~~~k~~~P 44 (90)
T 1wgf_A 11 QEGGKGGSEKPKRPVSAMFIFSEEKRRQLQEERP 44 (90)
T ss_dssp SCCCSSCCCCCCCCCCHHHHHHHHTHHHHHHHCT
T ss_pred cCcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCC
Confidence 3566789999999999999999999999887764
No 41
>2eqz_A High mobility group protein B3; HMG-box domain, mobility group protein 2A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.28 E-value=1.9e-07 Score=63.38 Aligned_cols=33 Identities=12% Similarity=0.218 Sum_probs=28.9
Q ss_pred hhhhhccCCCCCCCchHHHHHHHhhhhhhhcCC
Q psy14923 145 KKLFRETGKPKKPGNSFYLFIKDNIDKKEYEGK 177 (180)
Q Consensus 145 kk~~k~~~~PKrP~say~lF~~e~r~~~~~~~~ 177 (180)
++..+|++.||||+|||+|||++.|..+..+|.
T Consensus 7 ~~~~kdp~~PKrP~say~lF~~~~r~~~k~~~p 39 (86)
T 2eqz_A 7 GMAKGDPKKPKGKMSAYAFFVQTCREEHKKKNP 39 (86)
T ss_dssp SCSSCCSSSCCCCCCHHHHHHHHHHHHHHHHCT
T ss_pred CCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHCC
Confidence 455789999999999999999999999877664
No 42
>2yuk_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=98.25 E-value=1.3e-07 Score=64.95 Aligned_cols=32 Identities=16% Similarity=-0.006 Sum_probs=28.8
Q ss_pred hhhhccCCCCCCCchHHHHHHHhhhhhhhcCC
Q psy14923 146 KLFRETGKPKKPGNSFYLFIKDNIDKKEYEGK 177 (180)
Q Consensus 146 k~~k~~~~PKrP~say~lF~~e~r~~~~~~~~ 177 (180)
+..+|+++||||+|||||||.+.|+.+..+|.
T Consensus 15 k~~kDpnaPKRp~sAf~lf~~e~R~kik~enP 46 (90)
T 2yuk_A 15 KWEKEEALGEMATVAPVLYTNINFPNLKEEFP 46 (90)
T ss_dssp HHHHHHHHGGGCSSSHHHHHHHHCTTHHHHCC
T ss_pred hccCCCCCCCCCccHHHHHHHHhHHHHHHHCc
Confidence 44679999999999999999999999998875
No 43
>1k99_A Upstream binding factor 1; alpha-helix, L-shape, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1
Probab=98.24 E-value=3.7e-07 Score=63.64 Aligned_cols=33 Identities=27% Similarity=0.353 Sum_probs=28.8
Q ss_pred hhhhhccCCCCCCCchHHHHHHHhhhhhhhcCC
Q psy14923 145 KKLFRETGKPKKPGNSFYLFIKDNIDKKEYEGK 177 (180)
Q Consensus 145 kk~~k~~~~PKrP~say~lF~~e~r~~~~~~~~ 177 (180)
++..+|++.||||+|||+|||++.|..+..++.
T Consensus 2 kkk~kdp~~PKRP~saf~lF~~~~r~~ik~~~P 34 (99)
T 1k99_A 2 KKLKKHPDFPKKPLTPYFRFFMEKRAKYAKLHP 34 (99)
T ss_dssp CCCCSSSSSCCCSCCHHHHHHHHHHHHHHTTCT
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCC
Confidence 345689999999999999999999999877654
No 44
>1aab_A High mobility group protein; HMG-BOX, DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1
Probab=98.22 E-value=6e-07 Score=60.32 Aligned_cols=29 Identities=14% Similarity=0.345 Sum_probs=26.5
Q ss_pred hccCCCCCCCchHHHHHHHhhhhhhhcCC
Q psy14923 149 RETGKPKKPGNSFYLFIKDNIDKKEYEGK 177 (180)
Q Consensus 149 k~~~~PKrP~say~lF~~e~r~~~~~~~~ 177 (180)
+|+++||||+|||+|||+++|..+..+|.
T Consensus 3 kdp~~PKrP~say~lF~~~~r~~~~~~~p 31 (83)
T 1aab_A 3 GDPKKPRGKMSSYAFFVQTSREEHKKKHP 31 (83)
T ss_dssp CCTTCCCCCCCHHHHHHHHHHHHHTTSCT
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCC
Confidence 69999999999999999999999887664
No 45
>2lhj_A High mobility group protein homolog NHP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid; NMR {Babesia bovis}
Probab=98.19 E-value=2.9e-07 Score=63.83 Aligned_cols=34 Identities=21% Similarity=0.287 Sum_probs=29.8
Q ss_pred HhhhhhccCCCCCCCchHHHHHHHhhhhhhhcCC
Q psy14923 144 MKKLFRETGKPKKPGNSFYLFIKDNIDKKEYEGK 177 (180)
Q Consensus 144 ~kk~~k~~~~PKrP~say~lF~~e~r~~~~~~~~ 177 (180)
.++..+|++.||||+|||+|||++.|..+..+|.
T Consensus 13 ~~k~~kdp~~pKrP~say~lF~~~~r~~~k~~~p 46 (97)
T 2lhj_A 13 PRKAKKDPNAPKRALSSYMFFAKEKRVEIIAENP 46 (97)
T ss_dssp TTCTTSCCCCCCCCCCSSTHHHHGGGGGHHHHCT
T ss_pred cccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCC
Confidence 3567789999999999999999999999877654
No 46
>2co9_A Thymus high mobility group box protein TOX; TOX protein, HMG box domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.19 E-value=4.2e-07 Score=63.63 Aligned_cols=33 Identities=24% Similarity=0.440 Sum_probs=29.0
Q ss_pred hhhhhccCCCCCCCchHHHHHHHhhhhhhhcCC
Q psy14923 145 KKLFRETGKPKKPGNSFYLFIKDNIDKKEYEGK 177 (180)
Q Consensus 145 kk~~k~~~~PKrP~say~lF~~e~r~~~~~~~~ 177 (180)
++..+|++.||||+|||+|||+++|..+..+|.
T Consensus 9 kk~~kdp~~pKrP~say~lF~~~~r~~i~~~~P 41 (102)
T 2co9_A 9 KKKKKDPNEPQKPVSAYALFFRDTQAAIKGQNP 41 (102)
T ss_dssp CSSCCCCCSCCCCCCHHHHTHHHHHHHHHHHCT
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCC
Confidence 456689999999999999999999999877664
No 47
>1cg7_A Protein (NON histone protein 6 A); HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.21.1.1 PDB: 1j5n_A 1lwm_A
Probab=98.19 E-value=2.8e-07 Score=63.47 Aligned_cols=34 Identities=18% Similarity=0.340 Sum_probs=29.4
Q ss_pred HhhhhhccCCCCCCCchHHHHHHHhhhhhhhcCC
Q psy14923 144 MKKLFRETGKPKKPGNSFYLFIKDNIDKKEYEGK 177 (180)
Q Consensus 144 ~kk~~k~~~~PKrP~say~lF~~e~r~~~~~~~~ 177 (180)
.++..+|++.|+||+|||+|||++.|..+..+|.
T Consensus 11 ~~k~~kdp~~pKrP~saf~lF~~~~r~~~~~~~P 44 (93)
T 1cg7_A 11 TTRKKKDPNAPKRALSAYMFFANENRDIVRSENP 44 (93)
T ss_dssp CCCCCCCSSCCCSCCCHHHHHHHHHTSTTTTTCT
T ss_pred cCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCC
Confidence 3566789999999999999999999998876653
No 48
>1hme_A High mobility group protein fragment-B; DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1hmf_A 1nhm_A 1nhn_A 1hsm_A 1hsn_A 1j3c_A 1j3d_A 2yqi_A
Probab=98.17 E-value=7.7e-07 Score=58.86 Aligned_cols=29 Identities=28% Similarity=0.543 Sum_probs=26.2
Q ss_pred hccCCCCCCCchHHHHHHHhhhhhhhcCC
Q psy14923 149 RETGKPKKPGNSFYLFIKDNIDKKEYEGK 177 (180)
Q Consensus 149 k~~~~PKrP~say~lF~~e~r~~~~~~~~ 177 (180)
+|++.||||+|||+|||++.|..+..+|.
T Consensus 2 kdp~~pKrP~saf~lf~~~~r~~~~~~~p 30 (77)
T 1hme_A 2 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP 30 (77)
T ss_dssp CCSSCCCCCCCTTHHHHHHHHHHHHHHCT
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCC
Confidence 68999999999999999999999876654
No 49
>2e6o_A HMG box-containing protein 1; HMG-box domain, HMG-box transcription factor 1, high mobility group box transcription factor 1, structural genomics; NMR {Homo sapiens}
Probab=98.09 E-value=1.2e-06 Score=59.45 Aligned_cols=32 Identities=25% Similarity=0.149 Sum_probs=28.1
Q ss_pred hhhhccCCCCCCCchHHHHHHHhhhhhhhcCC
Q psy14923 146 KLFRETGKPKKPGNSFYLFIKDNIDKKEYEGK 177 (180)
Q Consensus 146 k~~k~~~~PKrP~say~lF~~e~r~~~~~~~~ 177 (180)
+..+|++.||||+|||+|||+++|..+..+|.
T Consensus 10 ~~~kdp~~pKrP~~af~lf~~~~r~~~~~~~P 41 (87)
T 2e6o_A 10 VSATSPNKCKRPMNAFMLFAKKYRVEYTQMYP 41 (87)
T ss_dssp CCCCCCSSCCCCCCHHHHHHHHTHHHHHHHCT
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCC
Confidence 35689999999999999999999999887654
No 50
>2d7l_A WD repeat and HMG-box DNA binding protein 1; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.07 E-value=2e-06 Score=57.86 Aligned_cols=28 Identities=14% Similarity=0.413 Sum_probs=25.4
Q ss_pred ccCCCCCCCchHHHHHHHhhhhhhhcCC
Q psy14923 150 ETGKPKKPGNSFYLFIKDNIDKKEYEGK 177 (180)
Q Consensus 150 ~~~~PKrP~say~lF~~e~r~~~~~~~~ 177 (180)
+++.||||+|||+|||++.|..+..+|.
T Consensus 2 ~~~~PKRP~say~lF~~e~R~~ik~~~P 29 (81)
T 2d7l_A 2 SSGSSGRPKTGFQMWLEENRSNILSDNP 29 (81)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHHHHHCT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCC
Confidence 5789999999999999999999988764
No 51
>2crj_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; structural DNA-binding protein BRAF35, DNA-bending; NMR {Mus musculus}
Probab=98.07 E-value=1.8e-06 Score=59.16 Aligned_cols=30 Identities=13% Similarity=0.275 Sum_probs=26.7
Q ss_pred hhccCCCCCCCchHHHHHHHhhhhhhhcCC
Q psy14923 148 FRETGKPKKPGNSFYLFIKDNIDKKEYEGK 177 (180)
Q Consensus 148 ~k~~~~PKrP~say~lF~~e~r~~~~~~~~ 177 (180)
.+|++.||||+|||+|||++.|..+..+|.
T Consensus 2 ~kdp~~pKrP~~af~lF~~~~r~~~~~~~p 31 (92)
T 2crj_A 2 SSGSSGPKAPVTGYVRFLNERREQIRTRHP 31 (92)
T ss_dssp CCCCSSSCCCCCHHHHHHHHHHHHHHHHCT
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCC
Confidence 368999999999999999999999887654
No 52
>1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1hrz_A*
Probab=98.05 E-value=2.2e-06 Score=56.46 Aligned_cols=28 Identities=25% Similarity=0.412 Sum_probs=23.5
Q ss_pred ccCCCCCCCchHHHHHHHhhhhhhhcCC
Q psy14923 150 ETGKPKKPGNSFYLFIKDNIDKKEYEGK 177 (180)
Q Consensus 150 ~~~~PKrP~say~lF~~e~r~~~~~~~~ 177 (180)
|++.||||+|||+|||++.|..+..+|.
T Consensus 1 dp~~pkrP~~af~lf~~~~r~~~~~~~p 28 (76)
T 1hry_A 1 VQDRVKRPMNAFIVWSRDQRRKMALENP 28 (76)
T ss_dssp --CCCCCCCCHHHHHHHHHHHHHHHHCS
T ss_pred CcCCCCCCCCHHHHHHHHHHHHHHHHCc
Confidence 5789999999999999999999877653
No 53
>3nm9_A HMG-D, high mobility group protein D; DNA bending, non-sequence-specific, HMG chromosomal protein; HET: DNA; 2.85A {Drosophila melanogaster} SCOP: a.21.1.1 PDB: 1e7j_A* 1hma_A 1qrv_A*
Probab=98.02 E-value=2.9e-06 Score=55.55 Aligned_cols=26 Identities=23% Similarity=0.480 Sum_probs=23.6
Q ss_pred CCCCCCCchHHHHHHHhhhhhhhcCC
Q psy14923 152 GKPKKPGNSFYLFIKDNIDKKEYEGK 177 (180)
Q Consensus 152 ~~PKrP~say~lF~~e~r~~~~~~~~ 177 (180)
++||||+|||+|||+++|..+..+|.
T Consensus 2 ~~PKrP~say~lf~~~~r~~~~~~~p 27 (73)
T 3nm9_A 2 DKPKRPLSAYALWLNSARESIKRENP 27 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHHHSS
T ss_pred ccCCCCCCHHHHHHHHHHHHHHHHCC
Confidence 68999999999999999999887764
No 54
>1wxl_A Single-strand recognition protein; FACT, SSRP1, HMG, DNA binding protein; NMR {Drosophila melanogaster}
Probab=98.01 E-value=3e-06 Score=55.49 Aligned_cols=27 Identities=22% Similarity=0.461 Sum_probs=24.3
Q ss_pred cCCCCCCCchHHHHHHHhhhhhhhcCC
Q psy14923 151 TGKPKKPGNSFYLFIKDNIDKKEYEGK 177 (180)
Q Consensus 151 ~~~PKrP~say~lF~~e~r~~~~~~~~ 177 (180)
|++||||+|||+|||++.|..+..+|.
T Consensus 1 P~~pKrP~say~lf~~~~r~~~~~~~p 27 (73)
T 1wxl_A 1 SHMPKRATTAFMLWLNDTRESIKRENP 27 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHHHST
T ss_pred CccCCCCCCHHHHHHHHHHHHHHHHCC
Confidence 578999999999999999999887764
No 55
>3fgh_A Transcription factor A, mitochondrial; HMG domain, mitochondrial transcription, activator, DNA- binding, mitochondrion, phosphoprotein; 1.35A {Homo sapiens}
Probab=97.97 E-value=3.4e-06 Score=54.29 Aligned_cols=25 Identities=20% Similarity=0.683 Sum_probs=22.0
Q ss_pred CCCCCCCchHHHHHHHhhhhhhhcC
Q psy14923 152 GKPKKPGNSFYLFIKDNIDKKEYEG 176 (180)
Q Consensus 152 ~~PKrP~say~lF~~e~r~~~~~~~ 176 (180)
|+||||+|||+|||++.|..+.-.|
T Consensus 1 g~PKrP~say~~F~~~~r~~~k~~~ 25 (67)
T 3fgh_A 1 GKPKRPRSAYNVYVAERFQEAKGDS 25 (67)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSSS
T ss_pred CcCCCCCCHHHHHHHHHHHHHHhcC
Confidence 6899999999999999999876544
No 56
>1v64_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=97.96 E-value=2.1e-06 Score=60.79 Aligned_cols=29 Identities=24% Similarity=0.419 Sum_probs=25.6
Q ss_pred hhhhhccCCC-CCCCchHHHHHHHhhhhhh
Q psy14923 145 KKLFRETGKP-KKPGNSFYLFIKDNIDKKE 173 (180)
Q Consensus 145 kk~~k~~~~P-KrP~say~lF~~e~r~~~~ 173 (180)
.++.+|++.| |||+|||+|||++.|..+.
T Consensus 8 ~kk~kd~~~P~KrP~say~lF~~e~r~~~k 37 (108)
T 1v64_A 8 QLKDKFDGRPTKPPPNSYSLYCAELMANMK 37 (108)
T ss_dssp CSSCCTTTSCCCCCSSHHHHHHHHHHHHCT
T ss_pred ccccCCCCCCCCCCCCHHHHHHHHHHHHHh
Confidence 3567899999 9999999999999999764
No 57
>2cs1_A PMS1 protein homolog 1; DNA mismatch repair protein PMS1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.87 E-value=6.8e-06 Score=56.26 Aligned_cols=29 Identities=24% Similarity=0.245 Sum_probs=25.7
Q ss_pred hccCCCCCCCchHHHHHHHhhhhhhhcCC
Q psy14923 149 RETGKPKKPGNSFYLFIKDNIDKKEYEGK 177 (180)
Q Consensus 149 k~~~~PKrP~say~lF~~e~r~~~~~~~~ 177 (180)
.++++||||+|||+|||+++|..+..+|.
T Consensus 3 ~~p~~pKrP~say~lF~~~~r~~~~~~~p 31 (92)
T 2cs1_A 3 SGSSGIKKPMSASALFVQDHRPQFLIENP 31 (92)
T ss_dssp CCCSSSCCCCCHHHHHHHHHHHHHHHHCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCC
Confidence 46889999999999999999999887664
No 58
>1wz6_A HMG-box transcription factor BBX; bobby SOX homolog, HMG_BOX domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative; NMR {Mus musculus}
Probab=97.86 E-value=8e-06 Score=54.59 Aligned_cols=29 Identities=24% Similarity=0.347 Sum_probs=25.5
Q ss_pred hccCCCCCCCchHHHHHHHhhhhhhhcCC
Q psy14923 149 RETGKPKKPGNSFYLFIKDNIDKKEYEGK 177 (180)
Q Consensus 149 k~~~~PKrP~say~lF~~e~r~~~~~~~~ 177 (180)
.+++.||||+|||+|||++.|..+..+|.
T Consensus 3 ~~~~~pkrP~~af~lf~~~~r~~~~~~~p 31 (82)
T 1wz6_A 3 SGSSGARRPMNAFLLFCKRHRSLVRQEHP 31 (82)
T ss_dssp SSCCCSCCCCCHHHHHHHHHHHHHHHHCS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCC
Confidence 46889999999999999999998877653
No 59
>4euw_A Transcription factor SOX-9; protein-DNA complex, HMG domain, activator, DNA-binding, NUC transcription; HET: DNA; 2.77A {Homo sapiens}
Probab=97.81 E-value=1e-05 Score=56.97 Aligned_cols=31 Identities=16% Similarity=0.173 Sum_probs=23.6
Q ss_pred hhhccCCCCCCCchHHHHHHHhhhhhhhcCC
Q psy14923 147 LFRETGKPKKPGNSFYLFIKDNIDKKEYEGK 177 (180)
Q Consensus 147 ~~k~~~~PKrP~say~lF~~e~r~~~~~~~~ 177 (180)
..++++.||||+|||+|||++.|..+..++.
T Consensus 23 ~~k~~~~pKRP~naf~lF~~~~r~~~k~~~P 53 (106)
T 4euw_A 23 SSKNKPHVKRPMNAFMVWAQAARRKLADQYP 53 (106)
T ss_dssp -----CCCCCCCCHHHHHHHHHHHHHHHHCT
T ss_pred ccCCCCcCCCCCCHHHHHHHHHHHHHHHHCC
Confidence 4678899999999999999999998876654
No 60
>1j46_A SRY, sex-determining region Y protein; MALE sex determining factor, SRY, sex-reversal mutation; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1j47_A
Probab=97.79 E-value=1.2e-05 Score=54.07 Aligned_cols=27 Identities=26% Similarity=0.450 Sum_probs=24.1
Q ss_pred cCCCCCCCchHHHHHHHhhhhhhhcCC
Q psy14923 151 TGKPKKPGNSFYLFIKDNIDKKEYEGK 177 (180)
Q Consensus 151 ~~~PKrP~say~lF~~e~r~~~~~~~~ 177 (180)
++.||||+|||+|||+++|..+..+|.
T Consensus 2 p~~pKRP~~af~lf~~~~r~~~~~~~P 28 (85)
T 1j46_A 2 QDRVKRPMNAFIVWSRDQRRKMALENP 28 (85)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHHHST
T ss_pred cCcCCCCCCHHHHHHHHHHHHHHHHCC
Confidence 689999999999999999999876654
No 61
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=97.78 E-value=9.9e-06 Score=52.41 Aligned_cols=26 Identities=23% Similarity=0.478 Sum_probs=19.9
Q ss_pred CCCCCCCchHHHHHHHhhhhhhhcCC
Q psy14923 152 GKPKKPGNSFYLFIKDNIDKKEYEGK 177 (180)
Q Consensus 152 ~~PKrP~say~lF~~e~r~~~~~~~~ 177 (180)
|.||||+|||+|||++.|..+..+|.
T Consensus 1 gk~krP~~af~lf~~~~r~~~~~~~p 26 (71)
T 4a3n_A 1 GSIRRPMNAFMVWAKDERKRLAQQNP 26 (71)
T ss_dssp ----CCCCHHHHHHHHHHHHHHTTCT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCC
Confidence 57999999999999999999887664
No 62
>1ckt_A High mobility group 1 protein; high-mobility group domain, BENT DNA, protein-drug-DNA compl regulation-DNA complex; HET: DNA 5IU; 2.50A {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1j3x_A
Probab=97.73 E-value=1.6e-05 Score=51.46 Aligned_cols=25 Identities=16% Similarity=0.355 Sum_probs=22.4
Q ss_pred CCCCCCchHHHHHHHhhhhhhhcCC
Q psy14923 153 KPKKPGNSFYLFIKDNIDKKEYEGK 177 (180)
Q Consensus 153 ~PKrP~say~lF~~e~r~~~~~~~~ 177 (180)
+||||+|||+|||++.|..+..+|.
T Consensus 1 kPKrP~say~~F~~~~r~~~~~~~p 25 (71)
T 1ckt_A 1 KPRGKMSSYAFFVQTCREEHKKKHP 25 (71)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHCT
T ss_pred CcCCCCCHHHHHHHHHHHHHHHHCC
Confidence 5999999999999999999877664
No 63
>3f27_D Transcription factor SOX-17; protein-DNA complex, HMG domain, endodermal, activator, DNA- nucleus, transcription regulation, transcrip complex; HET: DNA; 2.75A {Mus musculus} SCOP: a.21.1.1 PDB: 2yul_A
Probab=97.72 E-value=1.5e-05 Score=53.21 Aligned_cols=28 Identities=21% Similarity=0.385 Sum_probs=21.9
Q ss_pred ccCCCCCCCchHHHHHHHhhhhhhhcCC
Q psy14923 150 ETGKPKKPGNSFYLFIKDNIDKKEYEGK 177 (180)
Q Consensus 150 ~~~~PKrP~say~lF~~e~r~~~~~~~~ 177 (180)
.++.||||+|||+|||++.|..+..+|.
T Consensus 3 ~~~~pKrP~~af~lf~~~~r~~~~~~~p 30 (83)
T 3f27_D 3 FTSRIRRPMNAFMVWAKDERKRLAQQNP 30 (83)
T ss_dssp ----CCCCCCHHHHHHHHHHHHHHHHCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCC
Confidence 4568999999999999999999887664
No 64
>2cto_A Novel protein; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.70 E-value=1.9e-05 Score=54.41 Aligned_cols=28 Identities=21% Similarity=0.498 Sum_probs=24.5
Q ss_pred hccCCCCCCCchHHHHHHHhhhhhhhcC
Q psy14923 149 RETGKPKKPGNSFYLFIKDNIDKKEYEG 176 (180)
Q Consensus 149 k~~~~PKrP~say~lF~~e~r~~~~~~~ 176 (180)
.+.++||||+|||+|||++.|+.+..++
T Consensus 6 ~~~~~PKRP~sAf~lF~~e~R~~ik~e~ 33 (93)
T 2cto_A 6 SGMPNRKASRNAYYFFVQEKIPELRRRG 33 (93)
T ss_dssp CCCCCCCSSCCHHHHHHHTTHHHHHHHT
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHcC
Confidence 4678999999999999999999987653
No 65
>3u2b_C Transcription factor SOX-4; HMG domain, transcriptional regulation, transcription-DNA CO; HET: DNA; 2.40A {Mus musculus} SCOP: a.21.1.1
Probab=97.67 E-value=2.5e-05 Score=51.63 Aligned_cols=26 Identities=23% Similarity=0.305 Sum_probs=23.1
Q ss_pred CCCCCCCchHHHHHHHhhhhhhhcCC
Q psy14923 152 GKPKKPGNSFYLFIKDNIDKKEYEGK 177 (180)
Q Consensus 152 ~~PKrP~say~lF~~e~r~~~~~~~~ 177 (180)
|.||||+|||+|||++.|..+..+|.
T Consensus 1 G~iKRP~naf~lf~~~~r~~~~~~~p 26 (79)
T 3u2b_C 1 GHIKRPMNAFMVWSQIERRKIMEQSP 26 (79)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHTTST
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCc
Confidence 67999999999999999999877654
No 66
>1i11_A Transcription factor SOX-5; HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein, DNA sequence specific, testis determining.; NMR {Mus musculus} SCOP: a.21.1.1
Probab=97.65 E-value=2.7e-05 Score=51.85 Aligned_cols=27 Identities=26% Similarity=0.262 Sum_probs=23.0
Q ss_pred cCCCCCCCchHHHHHHHhhhhhhhcCC
Q psy14923 151 TGKPKKPGNSFYLFIKDNIDKKEYEGK 177 (180)
Q Consensus 151 ~~~PKrP~say~lF~~e~r~~~~~~~~ 177 (180)
.+.||||+|||+|||++.|..+..++.
T Consensus 2 ~~~pkRP~naf~lf~~~~r~~~~~~~p 28 (81)
T 1i11_A 2 SPHIKRPMNAFMVWAKDERRKILQAFP 28 (81)
T ss_dssp -CCSCCSCCHHHHHHHHHHHHHHTTCS
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHCC
Confidence 368999999999999999998876653
No 67
>1gt0_D Transcription factor SOX-2; POU factors, SOX proteins; 2.6A {Mus musculus} SCOP: a.21.1.1 PDB: 2le4_A 1o4x_B
Probab=97.63 E-value=3e-05 Score=51.44 Aligned_cols=26 Identities=23% Similarity=0.393 Sum_probs=22.8
Q ss_pred CCCCCCCchHHHHHHHhhhhhhhcCC
Q psy14923 152 GKPKKPGNSFYLFIKDNIDKKEYEGK 177 (180)
Q Consensus 152 ~~PKrP~say~lF~~e~r~~~~~~~~ 177 (180)
+.||||+|||+|||++.|..+..+|.
T Consensus 1 ~~pkrP~~af~lf~~~~r~~~~~~~p 26 (80)
T 1gt0_D 1 DRVKRPMNAFMVWSRGQRRKMAQENP 26 (80)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHTTST
T ss_pred CcCCCCCCHHHHHHHHHHHHHHHHCC
Confidence 47999999999999999999876654
No 68
>2lef_A LEF-1 HMG, protein (lymphoid enhancer-binding factor); LEF1, HMG, TCR-A, transcription factor; HET: DNA; NMR {Mus musculus} SCOP: a.21.1.1
Probab=97.60 E-value=3.4e-05 Score=51.96 Aligned_cols=26 Identities=31% Similarity=0.354 Sum_probs=22.9
Q ss_pred CCCCCCCchHHHHHHHhhhhhhhcCC
Q psy14923 152 GKPKKPGNSFYLFIKDNIDKKEYEGK 177 (180)
Q Consensus 152 ~~PKrP~say~lF~~e~r~~~~~~~~ 177 (180)
|.|+||+|||+|||++.|..+..+|.
T Consensus 1 ~~pKRP~naf~lf~~~~r~~~~~~~P 26 (86)
T 2lef_A 1 MHIKKPLNAFMLYMKEMRANVVAEST 26 (86)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCC
Confidence 57999999999999999999876653
No 69
>1v63_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: a.21.1.1
Probab=97.31 E-value=0.00011 Score=51.16 Aligned_cols=25 Identities=24% Similarity=0.432 Sum_probs=20.8
Q ss_pred ccCCCCCCCchHHHHHHHhhhhhhh
Q psy14923 150 ETGKPKKPGNSFYLFIKDNIDKKEY 174 (180)
Q Consensus 150 ~~~~PKrP~say~lF~~e~r~~~~~ 174 (180)
..++||||+|||+|||++.+.+...
T Consensus 5 ~~~~PKrP~say~lF~~e~~~~p~~ 29 (101)
T 1v63_A 5 SSGPKKPPMNGYQKFSQELLSNGEL 29 (101)
T ss_dssp CCSSCCCCSSSHHHHHHHHHHHCTT
T ss_pred CCCCCCCCCCHHHHHHHHHHhCCCC
Confidence 4678999999999999999875443
No 70
>1l8y_A Upstream binding factor 1; HUBF, HMG box 5, DNA binding domain, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1l8z_A 2hdz_A
Probab=97.09 E-value=0.00027 Score=48.36 Aligned_cols=26 Identities=15% Similarity=0.095 Sum_probs=23.0
Q ss_pred CCCCCCCchHHHHHHHhhhhhhhcCC
Q psy14923 152 GKPKKPGNSFYLFIKDNIDKKEYEGK 177 (180)
Q Consensus 152 ~~PKrP~say~lF~~e~r~~~~~~~~ 177 (180)
+.|+||+|||+||+++.|..+...+.
T Consensus 3 ~kPKrP~SAy~lf~~~~r~~~k~~~p 28 (91)
T 1l8y_A 3 KLPESPKRAEEIWQQSVIGDYLARFK 28 (91)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHcC
Confidence 58999999999999999998877653
No 71
>2qgu_A Probable signal peptide protein; NESG, RSR89, Q8XV73, structural genomics, PSI-2, protein STR initiative; HET: MSE PEF; 1.50A {Ralstonia solanacearum}
Probab=69.95 E-value=4.6 Score=31.06 Aligned_cols=47 Identities=11% Similarity=0.357 Sum_probs=36.1
Q ss_pred CCCCHHHHHHH-HHHHhhcCCHHHHHHHHHHHHHHH-HHHHHHHHhhhh
Q psy14923 72 PNIKIIEVTKL-VSEEWKKIGEAEKKRLENEYAKEK-EIYAQNVKKYHD 118 (180)
Q Consensus 72 p~~~~~ei~k~-l~~~Wk~Ls~~eK~~y~~~a~~~k-~~y~~~~~~y~~ 118 (180)
|-.++..+++. +|.-|+.+|+++++.|.+...... ..|-..+..|..
T Consensus 70 p~~D~~~~a~~vLG~~wr~at~~Qr~~F~~~F~~~L~~tY~~~l~~y~~ 118 (211)
T 2qgu_A 70 PRADFKRTTQIAMGRFWSQATPEQQQQIQDGFKSLLIRTYAGALANVRN 118 (211)
T ss_dssp GGBCHHHHHHHHHGGGTTTSCHHHHHHHHHHHHHHHHHHHHHHHHTCSS
T ss_pred hhcCHHHHHHHHHhHhHhhCCHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 34566666655 689999999999999998887744 457777887775
No 72
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.98 E-value=69 Score=20.94 Aligned_cols=37 Identities=16% Similarity=0.231 Sum_probs=26.4
Q ss_pred HHHHHHHHHhCCCCC-----HHHHHHHHHHHhhcCCHHHHHH
Q psy14923 61 GQIRNKIMERNPNIK-----IIEVTKLVSEEWKKIGEAEKKR 97 (180)
Q Consensus 61 ~e~r~~~~~~~p~~~-----~~ei~k~l~~~Wk~Ls~~eK~~ 97 (180)
+..|...+.-||+.. ..+..+.|.+.|..|++.++..
T Consensus 36 ~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~ 77 (99)
T 2yua_A 36 AAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRR 77 (99)
T ss_dssp HHHHHHHHHSCTTTCSSCSHHHHHHHHHHHHHHHTTSHHHHH
T ss_pred HHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHH
Confidence 344445566788865 3678888999999999876643
No 73
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=28.57 E-value=1.4e+02 Score=20.34 Aligned_cols=49 Identities=12% Similarity=0.227 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHH
Q psy14923 59 FQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAKEKEIY 109 (180)
Q Consensus 59 F~~e~r~~~~~~~p~~~~~ei~k~l~~~Wk~Ls~~eK~~y~~~a~~~k~~y 109 (180)
|..+++.-+ ..++++..++...|.+.|..+..-|=+.|.-.+...+..|
T Consensus 29 iLaER~kpL--~id~l~~~~L~e~~keLh~~I~~LEeEKYDlE~kv~kq~y 77 (106)
T 1j1d_B 29 ILAERRKVL--AIDHLNEDQLREKAKELWQTIYNLEAEKFDLQEKFKQQKY 77 (106)
T ss_dssp HHHHHHHHH--HHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCC--CCCCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhH
Confidence 455555433 3467888899999999998888777777776666665555
No 74
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}
Probab=27.24 E-value=99 Score=19.84 Aligned_cols=37 Identities=19% Similarity=0.303 Sum_probs=25.8
Q ss_pred HHHHHHHHHhCCCCC--HHHHHHHHHHHhhcCCHHHHHH
Q psy14923 61 GQIRNKIMERNPNIK--IIEVTKLVSEEWKKIGEAEKKR 97 (180)
Q Consensus 61 ~e~r~~~~~~~p~~~--~~ei~k~l~~~Wk~Ls~~eK~~ 97 (180)
+..+...+.-||+.. ..+..+.|.+.|..|++.++..
T Consensus 27 ~ayr~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~~R~ 65 (92)
T 2o37_A 27 KGYRKAALKYHPDKPTGDTEKFKEISEAFEILNDPQKRE 65 (92)
T ss_dssp HHHHHHHHHHCTTSTTCCHHHHHHHHHHHHHHTSHHHHH
T ss_pred HHHHHHHHHHCcCCCCChHHHHHHHHHHHHHHCCHHHHH
Confidence 344445566788864 4677888899999988876543
No 75
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Probab=25.14 E-value=93 Score=18.88 Aligned_cols=37 Identities=16% Similarity=0.317 Sum_probs=25.2
Q ss_pred HHHHHHHHHhCCCCCH--HHHHHHHHHHhhcCCHHHHHH
Q psy14923 61 GQIRNKIMERNPNIKI--IEVTKLVSEEWKKIGEAEKKR 97 (180)
Q Consensus 61 ~e~r~~~~~~~p~~~~--~ei~k~l~~~Wk~Ls~~eK~~ 97 (180)
+..+...+.-||+... .+..+.|.+.|..|++.++..
T Consensus 27 ~ayr~l~~~~HPD~~~~~~~~f~~i~~Ay~~L~d~~~R~ 65 (73)
T 2och_A 27 KAYRKMALKFHPDKNPDGAEQFKQISQAYEVLSDEKKRQ 65 (73)
T ss_dssp HHHHHHHHHTCTTTCTTCHHHHHHHHHHHHHHTSHHHHH
T ss_pred HHHHHHHHHHCcCCCcCHHHHHHHHHHHHHHHCCHHHHH
Confidence 3344445566887653 577888899999988776643
No 76
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=24.80 E-value=1.6e+02 Score=19.63 Aligned_cols=37 Identities=11% Similarity=0.250 Sum_probs=27.8
Q ss_pred HHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHHHHHHH
Q psy14923 78 EVTKLVSEEWKKIG---EAEKKRLENEYAKEKEIYAQNVK 114 (180)
Q Consensus 78 ei~k~l~~~Wk~Ls---~~eK~~y~~~a~~~k~~y~~~~~ 114 (180)
+-...|...|.+|+ |.++.+|.+..++....++.-+.
T Consensus 27 ~~~~~L~~~f~~L~sWqDqkr~kFee~fe~l~s~l~~f~e 66 (94)
T 3fx7_A 27 EEVNSLSNHFHNLESWRDARRDKFSEVLDNLKSTFNEFDE 66 (94)
T ss_dssp HHHHHHHHHHHHCCSCCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccchHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556888888887 88999999988887766655444
No 77
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=23.34 E-value=1.3e+02 Score=18.29 Aligned_cols=36 Identities=17% Similarity=0.336 Sum_probs=25.4
Q ss_pred HHHHHHHHhCCCCC----HHHHHHHHHHHhhcCCHHHHHH
Q psy14923 62 QIRNKIMERNPNIK----IIEVTKLVSEEWKKIGEAEKKR 97 (180)
Q Consensus 62 e~r~~~~~~~p~~~----~~ei~k~l~~~Wk~Ls~~eK~~ 97 (180)
..+...+.-||+.. ..+....|.+.|..|++.++..
T Consensus 23 ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~R~ 62 (77)
T 1hdj_A 23 AYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKRE 62 (77)
T ss_dssp HHHHHHHTTCTTTCCCTTHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHHHH
Confidence 33444555678754 4678889999999998876643
No 78
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.66 E-value=93 Score=19.14 Aligned_cols=36 Identities=11% Similarity=0.161 Sum_probs=23.8
Q ss_pred HHHHHHHHHhCCCCCH-----HHHHHHHHHHhhcCCHHHHH
Q psy14923 61 GQIRNKIMERNPNIKI-----IEVTKLVSEEWKKIGEAEKK 96 (180)
Q Consensus 61 ~e~r~~~~~~~p~~~~-----~ei~k~l~~~Wk~Ls~~eK~ 96 (180)
+..+...+.-||+... .+....|.+.|..|++..+.
T Consensus 26 ~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R 66 (79)
T 2dn9_A 26 KAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKR 66 (79)
T ss_dssp HHHHHHHHHTCTTTCSSCTTHHHHHHHHHHHHHHHHSHHHH
T ss_pred HHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHH
Confidence 3344445566787543 56778888888888776654
No 79
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.75 E-value=1.2e+02 Score=20.26 Aligned_cols=40 Identities=10% Similarity=0.211 Sum_probs=27.1
Q ss_pred HHHHHHHHHhCCCCCH-----HHHHHHHHHHhhcCCHHHHHHHHH
Q psy14923 61 GQIRNKIMERNPNIKI-----IEVTKLVSEEWKKIGEAEKKRLEN 100 (180)
Q Consensus 61 ~e~r~~~~~~~p~~~~-----~ei~k~l~~~Wk~Ls~~eK~~y~~ 100 (180)
+..|...+.-||+... .+..+.|.+.|..|++.++..-.+
T Consensus 39 ~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD 83 (112)
T 2ctq_A 39 AEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRARYD 83 (112)
T ss_dssp HHHHHHHHTTCTTTCTTCSTHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred HHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHH
Confidence 3344445566887653 678889999999998877654333
No 80
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=20.94 E-value=1.3e+02 Score=20.01 Aligned_cols=40 Identities=13% Similarity=0.214 Sum_probs=27.0
Q ss_pred HHHHHHHHHhCCCCCH-----HHHHHHHHHHhhcCCHHHHHHHHH
Q psy14923 61 GQIRNKIMERNPNIKI-----IEVTKLVSEEWKKIGEAEKKRLEN 100 (180)
Q Consensus 61 ~e~r~~~~~~~p~~~~-----~ei~k~l~~~Wk~Ls~~eK~~y~~ 100 (180)
+..+...+.-||+... .+..+.|.+.|..|++..+..-.+
T Consensus 36 ~aYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD 80 (109)
T 2ctw_A 36 KSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNIYD 80 (109)
T ss_dssp HHHHHHHHHSCTTTSTTCHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 3344445566888653 567888999999998876654333
Done!