Your job contains 1 sequence.
>psy14923
MALFKLTTGVFTGGNVFNLRSCLMPHLNSVTTAGLKQQTSQPLSIPEKPKKPLTPYFKFQ
GQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAKEKEIYAQNVKKYHDEL
TPEAIEFLRKEKEVKKQKKEKREMKKLFRETGKPKKPGNSFYLFIKDNIDKKEYEGKSYM
The BLAST search returned 6 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy14923
(180 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0038805 - symbol:TFAM "mitochondrial transcription... 211 3.2e-17 1
RGD|620682 - symbol:Tfam "transcription factor A, mitocho... 170 7.1e-13 1
UNIPROTKB|Q5D144 - symbol:TFAM "Transcription factor A, m... 161 6.4e-12 1
MGI|MGI:107810 - symbol:Tfam "transcription factor A, mit... 160 8.2e-12 1
UNIPROTKB|E1BA21 - symbol:TFAM "Transcription factor A, m... 156 2.2e-11 1
UNIPROTKB|Q0II87 - symbol:TFAM "Transcription factor A, m... 156 2.2e-11 1
UNIPROTKB|J3QR61 - symbol:SMARCE1 "SWI/SNF-related matrix... 155 2.8e-11 1
UNIPROTKB|F1RXE6 - symbol:SMARCE1 "Uncharacterized protei... 155 2.8e-11 1
ZFIN|ZDB-GENE-040426-1159 - symbol:ubtfl "upstream bindin... 153 4.3e-11 2
UNIPROTKB|Q00059 - symbol:TFAM "Transcription factor A, m... 153 5.1e-11 1
UNIPROTKB|E2QX86 - symbol:SMARCE1 "Uncharacterized protei... 155 1.5e-10 1
UNIPROTKB|B4DGM3 - symbol:SMARCE1 "cDNA FLJ55202, highly ... 155 1.5e-10 1
UNIPROTKB|Q4H0T5 - symbol:TFAM "Transcription factor A, m... 149 1.6e-10 1
UNIPROTKB|E9PKP7 - symbol:UBTF "Nucleolar transcription f... 146 1.6e-10 2
UNIPROTKB|Q969G3 - symbol:SMARCE1 "SWI/SNF-related matrix... 155 1.7e-10 1
MGI|MGI:1927347 - symbol:Smarce1 "SWI/SNF related, matrix... 155 1.7e-10 1
UNIPROTKB|F1NCC9 - symbol:SMARCE1 "Uncharacterized protei... 155 1.7e-10 1
UNIPROTKB|A5PKF6 - symbol:SMARCE1 "SMARCE1 protein" speci... 155 1.7e-10 1
UNIPROTKB|P17480 - symbol:UBTF "Nucleolar transcription f... 146 1.7e-10 2
RGD|3927 - symbol:Ubtf "upstream binding transcription fa... 146 1.7e-10 2
MGI|MGI:98512 - symbol:Ubtf "upstream binding transcripti... 146 1.7e-10 2
UNIPROTKB|F1NLS2 - symbol:TFAM "Uncharacterized protein" ... 148 2.9e-10 1
RGD|1304726 - symbol:Smarce1 "SWI/SNF related, matrix ass... 152 2.9e-10 1
UNIPROTKB|C9J8X5 - symbol:HMG20B "SWI/SNF-related matrix-... 142 6.6e-10 1
UNIPROTKB|C9JQA7 - symbol:HMG20B "SWI/SNF-related matrix-... 142 6.6e-10 1
UNIPROTKB|P25980 - symbol:ubtf-b "Nucleolar transcription... 152 8.5e-10 1
UNIPROTKB|E2R4Z8 - symbol:HMG20B "Uncharacterized protein... 146 8.8e-10 1
UNIPROTKB|Q32L68 - symbol:HMG20B "SWI/SNF-related matrix-... 146 8.9e-10 1
MGI|MGI:1341190 - symbol:Hmg20b "high mobility group 20B"... 144 1.5e-09 1
RGD|1309235 - symbol:Hmg20b "high mobility group 20 B" sp... 144 1.5e-09 1
FB|FBgn0030093 - symbol:dalao "dalao" species:7227 "Droso... 150 1.5e-09 1
UNIPROTKB|Q9P0W2 - symbol:HMG20B "SWI/SNF-related matrix-... 142 2.5e-09 1
UNIPROTKB|F1STP6 - symbol:LOC100623257 "Uncharacterized p... 142 3.8e-09 1
UNIPROTKB|P40618 - symbol:HMGB3 "High mobility group prot... 134 4.7e-09 1
UNIPROTKB|F1N8B1 - symbol:LOC100857252 "Uncharacterized p... 140 5.1e-09 1
UNIPROTKB|Q5ZKF4 - symbol:HMG20A "High mobility group pro... 140 5.1e-09 1
UNIPROTKB|J9NVS3 - symbol:HMGB3 "Uncharacterized protein"... 134 5.2e-09 1
UNIPROTKB|P25979 - symbol:ubtf-a "Nucleolar transcription... 144 5.9e-09 1
ZFIN|ZDB-GENE-030131-341 - symbol:hmgb1a "high-mobility g... 133 5.9e-09 1
UNIPROTKB|P36194 - symbol:HMGB1 "High mobility group prot... 133 5.9e-09 1
UNIPROTKB|J3QKX6 - symbol:SMARCE1 "SWI/SNF-related matrix... 133 5.9e-09 1
MGI|MGI:1914117 - symbol:Hmg20a "high mobility group 20A"... 139 6.5e-09 1
UNIPROTKB|Q0VCL5 - symbol:HMG20A "High-mobility group 20A... 139 6.5e-09 1
UNIPROTKB|E2RKW6 - symbol:HMG20A "Uncharacterized protein... 139 6.5e-09 1
UNIPROTKB|Q9NP66 - symbol:HMG20A "High mobility group pro... 139 6.5e-09 1
RGD|1564760 - symbol:Hmg20a "high mobility group 20A" spe... 139 7.7e-09 1
UNIPROTKB|A8MRB2 - symbol:TFAM "Transcription factor A, m... 132 8.0e-09 1
UNIPROTKB|E1BIU3 - symbol:LOC532409 "Uncharacterized prot... 131 9.7e-09 1
UNIPROTKB|Q32L31 - symbol:HMGB3 "High mobility group prot... 131 9.7e-09 1
UNIPROTKB|F1RQ19 - symbol:LOC100517745 "Uncharacterized p... 131 9.7e-09 1
ASPGD|ASPL0000037691 - symbol:AN2885 species:162425 "Emer... 131 9.7e-09 1
CGD|CAL0004040 - symbol:HMO1 species:5476 "Candida albica... 132 1.0e-08 1
UNIPROTKB|Q59PR9 - symbol:HMO1 "Potential HMG-like DNA bi... 132 1.0e-08 1
TAIR|locus:2128504 - symbol:3xHMG-box2 "3xHigh Mobility G... 138 1.4e-08 1
SGD|S000001515 - symbol:IXR1 "Protein that binds DNA intr... 125 2.3e-08 2
RGD|1588759 - symbol:Hmgb1-ps3 "high mobility group box 1... 127 3.0e-08 1
RGD|1564407 - symbol:Hmgb3 "high mobility group box 3" sp... 126 3.3e-08 1
UNIPROTKB|D4A9T3 - symbol:D4A9T3 "Uncharacterized protein... 126 3.3e-08 1
UNIPROTKB|P07156 - symbol:HMGB1 "High mobility group prot... 126 3.3e-08 1
TAIR|locus:2136103 - symbol:3xHMG-box1 "3xHigh Mobility G... 134 3.7e-08 1
RGD|1585821 - symbol:LOC680968 "similar to High mobility ... 126 4.1e-08 1
UNIPROTKB|E7EQU1 - symbol:HMGB3 "High mobility group prot... 125 4.2e-08 1
UNIPROTKB|E7ES08 - symbol:HMGB3 "High mobility group prot... 125 4.2e-08 1
UNIPROTKB|O15347 - symbol:HMGB3 "High mobility group prot... 125 4.2e-08 1
UNIPROTKB|H0YKM5 - symbol:HMG20A "High mobility group pro... 125 4.2e-08 1
RGD|1586285 - symbol:LOC691220 "hypothetical protein LOC6... 126 4.2e-08 1
RGD|1588313 - symbol:LOC679451 "similar to High mobility ... 126 4.2e-08 1
UNIPROTKB|P10103 - symbol:HMGB1 "High mobility group prot... 126 4.3e-08 1
UNIPROTKB|Q6YKA4 - symbol:HMGB1 "High mobility group prot... 126 4.3e-08 1
UNIPROTKB|P09429 - symbol:HMGB1 "High mobility group prot... 126 4.3e-08 1
UNIPROTKB|F2Z594 - symbol:HMGB1 "High mobility group prot... 126 4.3e-08 1
RGD|1591683 - symbol:LOC681718 "similar to High mobility ... 126 4.3e-08 1
RGD|2802 - symbol:Hmgb1 "high mobility group box 1" speci... 126 4.3e-08 1
RGD|1596979 - symbol:LOC678705 "hypothetical protein LOC6... 125 5.5e-08 1
UNIPROTKB|E1BMK2 - symbol:E1BMK2 "Uncharacterized protein... 125 5.7e-08 1
MGI|MGI:1098219 - symbol:Hmgb3 "high mobility group box 3... 123 6.8e-08 1
RGD|1589841 - symbol:LOC690940 "similar to High mobility ... 124 7.2e-08 1
RGD|1593466 - symbol:LOC689398 "similar to High mobility ... 124 7.2e-08 1
UNIPROTKB|P12682 - symbol:HMGB1 "High mobility group prot... 124 7.4e-08 1
UNIPROTKB|J3KT85 - symbol:SMARCE1 "SWI/SNF-related matrix... 122 8.7e-08 1
TAIR|locus:505006135 - symbol:HMGB2 "high mobility group ... 122 8.7e-08 1
SGD|S000004676 - symbol:ABF2 "Mitochondrial DNA-binding p... 120 1.4e-07 1
CGD|CAF0007020 - symbol:NHP6A species:5476 "Candida albic... 120 1.4e-07 1
UNIPROTKB|Q9UVL1 - symbol:NHP6 "Non-histone chromosomal p... 120 1.4e-07 1
UNIPROTKB|B2RPK0 - symbol:HMGB1P1 "Putative high mobility... 121 1.5e-07 1
RGD|1589528 - symbol:LOC679344 "similar to High mobility ... 121 1.7e-07 1
RGD|1592627 - symbol:LOC685520 "similar to High mobility ... 121 1.7e-07 1
SGD|S000002581 - symbol:HMO1 "Chromatin associated high m... 122 2.1e-07 1
UNIPROTKB|F1N927 - symbol:HMGB1 "High mobility group prot... 120 2.2e-07 1
UNIPROTKB|Q9YH06 - symbol:HMG1 "High mobility group 1 pro... 120 2.2e-07 1
RGD|1563668 - symbol:RGD1563668 "similar to High mobility... 119 2.7e-07 1
UNIPROTKB|P0C6E5 - symbol:P0C6E5 "Putative high mobility ... 115 2.8e-07 2
FB|FBgn0026582 - symbol:CG9418 species:7227 "Drosophila m... 123 4.3e-07 1
WB|WBGene00022182 - symbol:swsn-3 species:6239 "Caenorhab... 122 4.5e-07 1
UNIPROTKB|B4DFR4 - symbol:SMARCE1 "Smarce1 variant 5" spe... 122 4.6e-07 1
UNIPROTKB|E9PES6 - symbol:HMGB3 "High mobility group prot... 115 4.8e-07 1
FB|FBgn0004362 - symbol:HmgD "High mobility group protein... 115 4.8e-07 1
UNIPROTKB|H0YNS8 - symbol:HMG20A "High mobility group pro... 115 4.8e-07 1
DICTYBASE|DDB_G0270260 - symbol:nhp6 "HMG1/2 (high mobili... 111 1.3e-06 1
SGD|S000006256 - symbol:NHP6A "High-mobility group (HMG) ... 111 1.3e-06 1
WARNING: Descriptions of 67 database sequences were not reported due to the
limiting value of parameter V = 100.
>FB|FBgn0038805 [details] [associations]
symbol:TFAM "mitochondrial transcription factor A"
species:7227 "Drosophila melanogaster" [GO:0005739 "mitochondrion"
evidence=ISS;IDA;NAS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS;NAS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=NAS]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0006264 "mitochondrial DNA replication"
evidence=NAS] [GO:0005813 "centrosome" evidence=IDA] [GO:0005694
"chromosome" evidence=IDA] InterPro:IPR009071 Pfam:PF00505
EMBL:AE014297 GO:GO:0005739 GO:GO:0005813 GO:GO:0005694
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
HSSP:P11632 CTD:7019 eggNOG:NOG297801 KO:K11830 OMA:YENEMKS
GeneTree:ENSGT00440000039001 RefSeq:NP_732527.1 UniGene:Dm.6928
ProteinModelPortal:Q86BR8 SMR:Q86BR8 STRING:Q86BR8 PaxDb:Q86BR8
PRIDE:Q86BR8 EnsemblMetazoa:FBtr0083949 GeneID:42433
KEGG:dme:Dmel_CG4217 UCSC:CG4217-RB FlyBase:FBgn0038805
InParanoid:Q86BR8 OrthoDB:EOG4ZS7K0 PhylomeDB:Q86BR8
GenomeRNAi:42433 NextBio:828762 ArrayExpress:Q86BR8 Bgee:Q86BR8
Uniprot:Q86BR8
Length = 284
Score = 211 (79.3 bits), Expect = 3.2e-17, P = 3.2e-17
Identities = 46/152 (30%), Positives = 77/152 (50%)
Query: 29 SVTTAGLKQQTSQPLSIPEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWK 88
S T A + + L +P +PKKPLTPYF+F + R K+ NP I +EV + +S+ W
Sbjct: 58 SNTPAVPSKTLEEQLGLPPRPKKPLTPYFRFMREQRPKLKAANPQITTVEVVRQLSKNWS 117
Query: 89 KIGEAEKKRLENEYAKEKEIYAQNVKKYHDELTPEAIEFLRXXXXXXXXXXXXXXXXXLF 148
K+RL+ E+ ++++IY + KY LT E ++
Sbjct: 118 DADAQLKERLQAEFKRDQQIYVEERTKYDATLTEEQRAEIKQLKQDLVDAKERRQLRKRV 177
Query: 149 RETGKPKKPGNSFYLFI-KDNIDKKEYEGKSY 179
+E G+PKKP ++F FI + I+ + + ++Y
Sbjct: 178 KELGRPKKPASAFLRFIASERINTPQGDKQTY 209
>RGD|620682 [details] [associations]
symbol:Tfam "transcription factor A, mitochondrial" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IDA]
[GO:0003682 "chromatin binding" evidence=ISO;ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISO;IMP;TAS] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=ISO;IDA] [GO:0006264
"mitochondrial DNA replication" evidence=TAS] [GO:0006390
"transcription from mitochondrial promoter" evidence=ISO;IMP;TAS]
[GO:0006391 "transcription initiation from mitochondrial promoter"
evidence=ISO;ISS] [GO:0008301 "DNA binding, bending"
evidence=ISO;ISS] [GO:0031072 "heat shock protein binding"
evidence=IPI] [GO:0033108 "mitochondrial respiratory chain complex
assembly" evidence=IEA;ISO] [GO:0042645 "mitochondrial nucleoid"
evidence=ISO;ISS] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO;ISS] [GO:0070363
"mitochondrial light strand promoter sense binding"
evidence=ISO;ISS] InterPro:IPR009071 Pfam:PF00505 RGD:620682
GO:GO:0005634 GO:GO:0045893 GO:GO:0003700 GO:GO:0003682
GO:GO:0008301 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0042645 GO:GO:0033108 Pfam:PF09011
GO:GO:0006264 GO:GO:0006391 CTD:7019 eggNOG:NOG297801
HOGENOM:HOG000139423 HOVERGEN:HBG106674 KO:K11830 GO:GO:0070363
OMA:YENEMKS OrthoDB:EOG4KKZ4D GeneTree:ENSGT00440000039001
EMBL:AB014089 EMBL:AJ312746 EMBL:AF377866 EMBL:BC062022
IPI:IPI00327334 RefSeq:NP_112616.1 UniGene:Rn.18266
ProteinModelPortal:Q91ZW1 STRING:Q91ZW1 PRIDE:Q91ZW1
Ensembl:ENSRNOT00000000753 GeneID:83474 KEGG:rno:83474
UCSC:RGD:620682 InParanoid:Q91ZW1 NextBio:615889
ArrayExpress:Q91ZW1 Genevestigator:Q91ZW1
GermOnline:ENSRNOG00000000613 Uniprot:Q91ZW1
Length = 244
Score = 170 (64.9 bits), Expect = 7.1e-13, P = 7.1e-13
Identities = 33/132 (25%), Positives = 68/132 (51%)
Query: 44 SIPEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYA 103
S+ PKKP++ Y +F + K ++P+ K+ E+ + ++ W+++ EAEKK E ++
Sbjct: 44 SLGNYPKKPMSSYLRFSTEQLPKFKAKHPDAKVSELIRKIAAMWRELPEAEKKVYEADFK 103
Query: 104 KEKEIYAQNVKKYHDELTPEAIEFLRXXXXXXXXXXXXXXXXXLFRETGKPKKPGNSFYL 163
E ++Y + V KY ++LTP + L GKPK+P +++ +
Sbjct: 104 AEWKVYKEAVSKYKEQLTPSQLMGLEKEARQKRLKKKAQIKRRELILLGKPKRPRSAYNI 163
Query: 164 FIKDNIDKKEYE 175
++ ++ + + E
Sbjct: 164 YVSESFQEAKDE 175
>UNIPROTKB|Q5D144 [details] [associations]
symbol:TFAM "Transcription factor A, mitochondrial"
species:9823 "Sus scrofa" [GO:0008301 "DNA binding, bending"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006390
"transcription from mitochondrial promoter" evidence=ISS]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0042645 "mitochondrial nucleoid" evidence=ISS]
[GO:0003682 "chromatin binding" evidence=ISS] [GO:0006391
"transcription initiation from mitochondrial promoter"
evidence=ISS] [GO:0070363 "mitochondrial light strand promoter
sense binding" evidence=ISS] [GO:0033108 "mitochondrial respiratory
chain complex assembly" evidence=IEA] InterPro:IPR009071
Pfam:PF00505 GO:GO:0045893 GO:GO:0003700 GO:GO:0003682
GO:GO:0008301 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0042645 GO:GO:0033108 Pfam:PF09011
HSSP:P63159 GO:GO:0006391 CTD:7019 eggNOG:NOG297801
HOGENOM:HOG000139423 HOVERGEN:HBG106674 KO:K11830 GO:GO:0070363
OrthoDB:EOG4KKZ4D EMBL:AY923074 RefSeq:NP_001123683.1
UniGene:Ssc.48086 UniGene:Ssc.78474 ProteinModelPortal:Q5D144
STRING:Q5D144 GeneID:397279 KEGG:ssc:397279 Uniprot:Q5D144
Length = 246
Score = 161 (61.7 bits), Expect = 6.4e-12, P = 6.4e-12
Identities = 34/130 (26%), Positives = 65/130 (50%)
Query: 49 PKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAKEKEI 108
PKKP+T Y +F + +NP+ K E+ K ++E W+++ ++EKK E+ Y + ++
Sbjct: 50 PKKPMTSYVRFSKEQLPIFKAQNPDAKNSELIKKIAELWRELPDSEKKIYEDAYRADWQV 109
Query: 109 YAQNVKKYHDELTPEAIEFLRXXXXXXXXXXXXXXXXXLFRETGKPKKPGNSFYLFIKDN 168
Y + V + ++LTP + L GKPK+P +++ +FI +
Sbjct: 110 YKEEVNRIQEQLTPSQMVSLEKEIMQKRLKKKALIKKRELTMLGKPKRPRSAYNIFIAER 169
Query: 169 IDKKEYEGKS 178
+ + +G S
Sbjct: 170 FQEAK-DGPS 178
>MGI|MGI:107810 [details] [associations]
symbol:Tfam "transcription factor A, mitochondrial"
species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=ISO] [GO:0003682 "chromatin binding" evidence=ISO]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISO;TAS] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005667 "transcription factor complex" evidence=TAS]
[GO:0005739 "mitochondrion" evidence=ISO;IDA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0006390 "transcription from mitochondrial promoter"
evidence=ISO] [GO:0006391 "transcription initiation from
mitochondrial promoter" evidence=ISO] [GO:0008301 "DNA binding,
bending" evidence=ISO] [GO:0031072 "heat shock protein binding"
evidence=ISO] [GO:0033108 "mitochondrial respiratory chain complex
assembly" evidence=IMP] [GO:0042645 "mitochondrial nucleoid"
evidence=ISO] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=ISO] [GO:0070363 "mitochondrial light
strand promoter sense binding" evidence=ISO] InterPro:IPR009071
EMBL:U57939 MGI:MGI:107810 Pfam:PF00505 GO:GO:0045893 GO:GO:0003700
GO:GO:0003682 GO:GO:0005667 GO:GO:0008301 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0042645
GO:GO:0033108 Pfam:PF09011 GO:GO:0006391 CTD:7019 eggNOG:NOG297801
HOGENOM:HOG000139423 HOVERGEN:HBG106674 KO:K11830 GO:GO:0070363
OMA:YENEMKS OrthoDB:EOG4KKZ4D ChiTaRS:TFAM EMBL:U63858
EMBL:BC001987 EMBL:BC083084 EMBL:AK004857 EMBL:AK050446
EMBL:AK167348 EMBL:AK167777 EMBL:AK169808 EMBL:U63712 EMBL:L07107
IPI:IPI00112822 IPI:IPI00230512 PIR:I49745 RefSeq:NP_033386.1
UniGene:Mm.229292 ProteinModelPortal:P40630 SMR:P40630
IntAct:P40630 STRING:P40630 PhosphoSite:P40630 PaxDb:P40630
PRIDE:P40630 Ensembl:ENSMUST00000092430 Ensembl:ENSMUST00000105432
Ensembl:ENSMUST00000121685 GeneID:21780 KEGG:mmu:21780
UCSC:uc007fol.1 UCSC:uc007fom.1 GeneTree:ENSGT00440000039001
InParanoid:P40630 NextBio:301118 Bgee:P40630 CleanEx:MM_TFAM
Genevestigator:P40630 GermOnline:ENSMUSG00000003923 Uniprot:P40630
Length = 243
Score = 160 (61.4 bits), Expect = 8.2e-12, P = 8.2e-12
Identities = 31/128 (24%), Positives = 65/128 (50%)
Query: 44 SIPEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYA 103
S+ PKKP++ Y +F + K ++P+ K+ E+ + ++ W+++ EAEKK E ++
Sbjct: 44 SMGSYPKKPMSSYLRFSTEQLPKFKAKHPDAKLSELVRKIAALWRELPEAEKKVYEADFK 103
Query: 104 KEKEIYAQNVKKYHDELTPEAIEFLRXXXXXXXXXXXXXXXXXLFRETGKPKKPGNSFYL 163
E + Y + V KY ++LTP + + GKPK+P +++ +
Sbjct: 104 AEWKAYKEAVSKYKEQLTPSQLMGMEKEARQRRLKKKALVKRRELILLGKPKRPRSAYNI 163
Query: 164 FIKDNIDK 171
++ ++ +
Sbjct: 164 YVSESFQE 171
>UNIPROTKB|E1BA21 [details] [associations]
symbol:TFAM "Transcription factor A, mitochondrial"
species:9913 "Bos taurus" [GO:0070363 "mitochondrial light strand
promoter sense binding" evidence=IEA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0042645 "mitochondrial nucleoid" evidence=IEA] [GO:0033108
"mitochondrial respiratory chain complex assembly" evidence=IEA]
[GO:0006391 "transcription initiation from mitochondrial promoter"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
InterPro:IPR009071 Pfam:PF00505 GO:GO:0045893 GO:GO:0003682
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0042645 GO:GO:0033108 Pfam:PF09011 GO:GO:0006391
IPI:IPI00707168 UniGene:Bt.102328 GO:GO:0070363 OMA:YENEMKS
GeneTree:ENSGT00440000039001 EMBL:DAAA02062260 EMBL:DAAA02062261
Ensembl:ENSBTAT00000052511 Uniprot:E1BA21
Length = 246
Score = 156 (60.0 bits), Expect = 2.2e-11, P = 2.2e-11
Identities = 33/135 (24%), Positives = 66/135 (48%)
Query: 44 SIPEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYA 103
S+ PKKP+T Y +F + +NP+ K E+ K +++ W+++ ++EKK E+ Y
Sbjct: 45 SLSGYPKKPMTSYVRFSKEQLPIFKAQNPDAKNSELIKKIAKLWRELPDSEKKIYEDAYR 104
Query: 104 KEKEIYAQNVKKYHDELTPEAIEFLRXXXXXXXXXXXXXXXXXLFRETGKPKKPGNSFYL 163
+ ++Y + + + ++LTP + L GKPK+P +++ +
Sbjct: 105 ADWQVYKEEINRIQEQLTPSQMVSLEKEIMQKRLKKKALIKKRELTMLGKPKRPRSAYNI 164
Query: 164 FIKDNIDKKEYEGKS 178
FI + + +G S
Sbjct: 165 FIAERFQEAR-DGTS 178
>UNIPROTKB|Q0II87 [details] [associations]
symbol:TFAM "Transcription factor A, mitochondrial"
species:9913 "Bos taurus" [GO:0008301 "DNA binding, bending"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006390
"transcription from mitochondrial promoter" evidence=ISS]
[GO:0042645 "mitochondrial nucleoid" evidence=ISS] [GO:0003682
"chromatin binding" evidence=ISS] [GO:0006391 "transcription
initiation from mitochondrial promoter" evidence=ISS] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0070363 "mitochondrial light strand promoter sense binding"
evidence=ISS] InterPro:IPR009071 Pfam:PF00505 GO:GO:0045893
GO:GO:0003700 GO:GO:0003682 GO:GO:0008301 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0042645
Pfam:PF09011 GO:GO:0006391 EMBL:BC122754 IPI:IPI00707168
RefSeq:NP_001029188.2 UniGene:Bt.102328 ProteinModelPortal:Q0II87
STRING:Q0II87 PRIDE:Q0II87 GeneID:510059 KEGG:bta:510059 CTD:7019
eggNOG:NOG297801 HOGENOM:HOG000139423 HOVERGEN:HBG106674
InParanoid:Q0II87 KO:K11830 NextBio:20869256 GO:GO:0070363
Uniprot:Q0II87
Length = 246
Score = 156 (60.0 bits), Expect = 2.2e-11, P = 2.2e-11
Identities = 33/135 (24%), Positives = 66/135 (48%)
Query: 44 SIPEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYA 103
S+ PKKP+T Y +F + +NP+ K E+ K +++ W+++ ++EKK E+ Y
Sbjct: 45 SLSGYPKKPMTSYVRFSKEQLPIFKAQNPDAKNSELIKKIAKLWRELPDSEKKIYEDAYR 104
Query: 104 KEKEIYAQNVKKYHDELTPEAIEFLRXXXXXXXXXXXXXXXXXLFRETGKPKKPGNSFYL 163
+ ++Y + + + ++LTP + L GKPK+P +++ +
Sbjct: 105 ADWQVYKEEINRIQEQLTPSQMVSLEKEIMQKRLKKKALIKKRELTMLGKPKRPRSAYNI 164
Query: 164 FIKDNIDKKEYEGKS 178
FI + + +G S
Sbjct: 165 FIAERFQEAR-DGTS 178
>UNIPROTKB|J3QR61 [details] [associations]
symbol:SMARCE1 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily E member 1"
species:9606 "Homo sapiens" [GO:0016514 "SWI/SNF complex"
evidence=IEA] [GO:0071564 "npBAF complex" evidence=IEA] [GO:0071565
"nBAF complex" evidence=IEA] InterPro:IPR009071 Pfam:PF00505
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
HGNC:HGNC:11109 EMBL:AC004585 EMBL:AC073508 Ensembl:ENST00000580654
Uniprot:J3QR61
Length = 153
Score = 155 (59.6 bits), Expect = 2.8e-11, P = 2.8e-11
Identities = 34/130 (26%), Positives = 62/130 (47%)
Query: 25 PHLNSVTTAGLKQQTSQPLSIPEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVS 84
P NS TA +P P+ P KPL PY ++ ++ +++ NP++K+ E+ K++
Sbjct: 27 PGTNSRVTASSGITIPKP---PKPPDKPLMPYMRYSRKVWDQVKASNPDLKLWEIGKIIG 83
Query: 85 EEWKKIGEAEKKRLENEYAKEKEIYAQNVKKYHDELTPEAIEFLRXXXXXXXXXXXXXXX 144
W+ + + EK+ NEY EK Y +++K YH+ +P + ++
Sbjct: 84 GMWRDLTDEEKQEYLNEYEAEKIEYNESMKAYHN--SPAYLAYINAKSRAEAALEEESRQ 141
Query: 145 XXLFRETGKP 154
E G+P
Sbjct: 142 RQSRMEKGEP 151
>UNIPROTKB|F1RXE6 [details] [associations]
symbol:SMARCE1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071565 "nBAF complex" evidence=IEA] [GO:0071564 "npBAF
complex" evidence=IEA] [GO:0047485 "protein N-terminus binding"
evidence=IEA] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0017053 "transcriptional repressor
complex" evidence=IEA] [GO:0016922 "ligand-dependent nuclear
receptor binding" evidence=IEA] [GO:0016514 "SWI/SNF complex"
evidence=IEA] [GO:0008080 "N-acetyltransferase activity"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
[GO:0006337 "nucleosome disassembly" evidence=IEA]
InterPro:IPR009071 Pfam:PF00505 GO:GO:0017053 GO:GO:0045892
GO:GO:0006338 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0071564 GO:GO:0016514 GO:GO:0071565
GO:GO:0008080 GO:GO:0006337 GeneTree:ENSGT00390000003628
EMBL:CU856162 Ensembl:ENSSSCT00000019017 OMA:HANINAK Uniprot:F1RXE6
Length = 194
Score = 155 (59.6 bits), Expect = 2.8e-11, P = 2.8e-11
Identities = 34/130 (26%), Positives = 62/130 (47%)
Query: 25 PHLNSVTTAGLKQQTSQPLSIPEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVS 84
P NS TA +P P+ P KPL PY ++ ++ +++ NP++K+ E+ K++
Sbjct: 45 PGTNSRVTASSGITIPKP---PKPPDKPLMPYMRYSRKVWDQVKASNPDLKLWEIGKIIG 101
Query: 85 EEWKKIGEAEKKRLENEYAKEKEIYAQNVKKYHDELTPEAIEFLRXXXXXXXXXXXXXXX 144
W+ + + EK+ NEY EK Y +++K YH+ +P + ++
Sbjct: 102 GMWRDLTDEEKQEYLNEYEAEKIEYNESMKAYHN--SPAYLAYINAKSRAEAALEEESRQ 159
Query: 145 XXLFRETGKP 154
E G+P
Sbjct: 160 RQSRMEKGEP 169
>ZFIN|ZDB-GENE-040426-1159 [details] [associations]
symbol:ubtfl "upstream binding transcription
factor, like" species:7955 "Danio rerio" [GO:0003682 "chromatin
binding" evidence=IEA] InterPro:IPR009071 InterPro:IPR001005
SMART:SM00717 Pfam:PF00505 ZFIN:ZDB-GENE-040426-1159 GO:GO:0003682
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 KO:K09273 HOVERGEN:HBG008708 EMBL:BC055140
IPI:IPI00497109 RefSeq:NP_957297.1 UniGene:Dr.82352 HSSP:P17480
ProteinModelPortal:Q7SY36 SMR:Q7SY36 STRING:Q7SY36 PRIDE:Q7SY36
GeneID:393978 KEGG:dre:393978 CTD:393978 InParanoid:Q7SY36
NextBio:20814948 ArrayExpress:Q7SY36 Bgee:Q7SY36 Uniprot:Q7SY36
Length = 719
Score = 153 (58.9 bits), Expect = 4.3e-11, Sum P(2) = 4.3e-11
Identities = 28/81 (34%), Positives = 56/81 (69%)
Query: 46 PEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAKE 105
P+ PKKPLTPYF+F + R K + +P + +++TK++S+++K++ E +K + E+ +E
Sbjct: 111 PDFPKKPLTPYFRFFMEKRAKYAKIHPEMSNLDLTKILSKKYKELPEKKKLKYIQEFQRE 170
Query: 106 KEIYAQNVKKYHDELTPEAIE 126
KE + +N+ ++ ++ P+ IE
Sbjct: 171 KESFEKNMARFKED-HPDLIE 190
Score = 35 (17.4 bits), Expect = 4.3e-11, Sum P(2) = 4.3e-11
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 152 GKPKKPGNSFY-LFIKDNIDKKE 173
G+PKKP S Y +F ++ + E
Sbjct: 523 GEPKKPPVSGYQMFSQELLTNGE 545
>UNIPROTKB|Q00059 [details] [associations]
symbol:TFAM "Transcription factor A, mitochondrial"
species:9606 "Homo sapiens" [GO:0031072 "heat shock protein
binding" evidence=IEA] [GO:0033108 "mitochondrial respiratory chain
complex assembly" evidence=IEA] [GO:0070363 "mitochondrial light
strand promoter sense binding" evidence=IDA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0006391 "transcription initiation from mitochondrial promoter"
evidence=IDA;TAS] [GO:0003682 "chromatin binding" evidence=IDA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IMP] [GO:0006390 "transcription from
mitochondrial promoter" evidence=IMP;TAS] [GO:0008301 "DNA binding,
bending" evidence=IDA] [GO:0006356 "regulation of transcription
from RNA polymerase I promoter" evidence=TAS] [GO:0006261
"DNA-dependent DNA replication" evidence=TAS] [GO:0005759
"mitochondrial matrix" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0042645 "mitochondrial nucleoid" evidence=IDA] [GO:0005739
"mitochondrion" evidence=IDA] Reactome:REACT_71 InterPro:IPR009071
Pfam:PF00505 GO:GO:0045893 GO:GO:0003700 GO:GO:0003682
GO:GO:0006261 GO:GO:0008301 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0042645 Reactome:REACT_1788
GO:GO:0006356 GO:GO:0033108 Pfam:PF09011 GO:GO:0006391 CTD:7019
eggNOG:NOG297801 HOGENOM:HOG000139423 HOVERGEN:HBG106674 KO:K11830
GO:GO:0070363 EMBL:M62810 EMBL:EU279428 EMBL:BT019658 EMBL:BT019659
EMBL:AK312558 EMBL:AB451241 EMBL:AB451366 EMBL:AC023170
EMBL:BC126366 EMBL:X64269 IPI:IPI00020928 PIR:JC1496
RefSeq:NP_003192.1 UniGene:Hs.594250 PDB:3FGH PDB:3TMM PDB:3TQ6
PDBsum:3FGH PDBsum:3TMM PDBsum:3TQ6 ProteinModelPortal:Q00059
SMR:Q00059 IntAct:Q00059 STRING:Q00059 PhosphoSite:Q00059
DMDM:417324 PaxDb:Q00059 PRIDE:Q00059 DNASU:7019
Ensembl:ENST00000487519 GeneID:7019 KEGG:hsa:7019 UCSC:uc001jkf.3
GeneCards:GC10P060146 HGNC:HGNC:11741 HPA:HPA040648 MIM:600438
neXtProt:NX_Q00059 PharmGKB:PA36458 InParanoid:Q00059 OMA:YENEMKS
OrthoDB:EOG4KKZ4D PhylomeDB:Q00059 ChiTaRS:TFAM
EvolutionaryTrace:Q00059 GenomeRNAi:7019 NextBio:27419
ArrayExpress:Q00059 Bgee:Q00059 CleanEx:HS_TFAM
Genevestigator:Q00059 GermOnline:ENSG00000108064 Uniprot:Q00059
Length = 246
Score = 153 (58.9 bits), Expect = 5.1e-11, P = 5.1e-11
Identities = 29/130 (22%), Positives = 66/130 (50%)
Query: 49 PKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAKEKEI 108
PKKP++ Y +F + +NP+ K E+ + +++ W+++ +++KK ++ Y E ++
Sbjct: 50 PKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQV 109
Query: 109 YAQNVKKYHDELTPEAIEFLRXXXXXXXXXXXXXXXXXLFRETGKPKKPGNSFYLFIKDN 168
Y + + ++ ++LTP I L GKPK+P +++ +++ +
Sbjct: 110 YKEEISRFKEQLTPSQIMSLEKEIMDKHLKRKAMTKKKELTLLGKPKRPRSAYNVYVAER 169
Query: 169 IDKKEYEGKS 178
+E +G S
Sbjct: 170 F--QEAKGDS 177
>UNIPROTKB|E2QX86 [details] [associations]
symbol:SMARCE1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0071565 "nBAF complex" evidence=IEA]
[GO:0071564 "npBAF complex" evidence=IEA] [GO:0047485 "protein
N-terminus binding" evidence=IEA] [GO:0045892 "negative regulation
of transcription, DNA-dependent" evidence=IEA] [GO:0017053
"transcriptional repressor complex" evidence=IEA] [GO:0016922
"ligand-dependent nuclear receptor binding" evidence=IEA]
[GO:0016514 "SWI/SNF complex" evidence=IEA] [GO:0008080
"N-acetyltransferase activity" evidence=IEA] [GO:0006338 "chromatin
remodeling" evidence=IEA] [GO:0006337 "nucleosome disassembly"
evidence=IEA] InterPro:IPR009071 Pfam:PF00505 GO:GO:0017053
GO:GO:0045892 GO:GO:0006338 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0071564 GO:GO:0016514
GO:GO:0071565 GO:GO:0008080 GO:GO:0006337 CTD:6605 KO:K11651
OMA:EDESIPM GeneTree:ENSGT00390000003628 EMBL:AAEX03006463
RefSeq:XP_862912.2 Ensembl:ENSCAFT00000025430 GeneID:608250
KEGG:cfa:608250 NextBio:20893916 Uniprot:E2QX86
Length = 393
Score = 155 (59.6 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 34/130 (26%), Positives = 62/130 (47%)
Query: 25 PHLNSVTTAGLKQQTSQPLSIPEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVS 84
P NS TA +P P+ P KPL PY ++ ++ +++ NP++K+ E+ K++
Sbjct: 27 PGTNSRVTASSGITIPKP---PKPPDKPLMPYMRYSRKVWDQVKASNPDLKLWEIGKIIG 83
Query: 85 EEWKKIGEAEKKRLENEYAKEKEIYAQNVKKYHDELTPEAIEFLRXXXXXXXXXXXXXXX 144
W+ + + EK+ NEY EK Y +++K YH+ +P + ++
Sbjct: 84 GMWRDLTDEEKQEYLNEYEAEKIEYNESMKAYHN--SPAYLAYINAKSRAEAALEEESRQ 141
Query: 145 XXLFRETGKP 154
E G+P
Sbjct: 142 RQSRMEKGEP 151
>UNIPROTKB|B4DGM3 [details] [associations]
symbol:SMARCE1 "cDNA FLJ55202, highly similar to
SWI/SNF-related matrix-associatedactin-dependent regulator of
chromatin subfamily E member 1" species:9606 "Homo sapiens"
[GO:0016514 "SWI/SNF complex" evidence=IEA] [GO:0071564 "npBAF
complex" evidence=IEA] [GO:0071565 "nBAF complex" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0071564 GO:GO:0016514 GO:GO:0071565 UniGene:Hs.740388
HGNC:HGNC:11109 HOVERGEN:HBG054558 OrthoDB:EOG4229K4 EMBL:AC004585
EMBL:AC073508 EMBL:AK294666 IPI:IPI01015411 SMR:B4DGM3
STRING:B4DGM3 Ensembl:ENST00000431889 Uniprot:B4DGM3
Length = 393
Score = 155 (59.6 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 34/130 (26%), Positives = 62/130 (47%)
Query: 25 PHLNSVTTAGLKQQTSQPLSIPEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVS 84
P NS TA +P P+ P KPL PY ++ ++ +++ NP++K+ E+ K++
Sbjct: 27 PGTNSRVTASSGITIPKP---PKPPDKPLMPYMRYSRKVWDQVKASNPDLKLWEIGKIIG 83
Query: 85 EEWKKIGEAEKKRLENEYAKEKEIYAQNVKKYHDELTPEAIEFLRXXXXXXXXXXXXXXX 144
W+ + + EK+ NEY EK Y +++K YH+ +P + ++
Sbjct: 84 GMWRDLTDEEKQEYLNEYEAEKIEYNESMKAYHN--SPAYLAYINAKSRAEAALEEESRQ 141
Query: 145 XXLFRETGKP 154
E G+P
Sbjct: 142 RQSRMEKGEP 151
>UNIPROTKB|Q4H0T5 [details] [associations]
symbol:TFAM "Transcription factor A, mitochondrial"
species:122765 "Trachypithecus cristatus" [GO:0003682 "chromatin
binding" evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006390
"transcription from mitochondrial promoter" evidence=ISS]
[GO:0006391 "transcription initiation from mitochondrial promoter"
evidence=ISS] [GO:0008301 "DNA binding, bending" evidence=ISS]
[GO:0042645 "mitochondrial nucleoid" evidence=ISS] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0070363 "mitochondrial light strand promoter sense binding"
evidence=ISS] InterPro:IPR009071 Pfam:PF00505 GO:GO:0045893
GO:GO:0003700 GO:GO:0003682 GO:GO:0008301 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0042645
Pfam:PF09011 GO:GO:0006391 HOVERGEN:HBG106674 GO:GO:0070363
EMBL:AJ830015 ProteinModelPortal:Q4H0T5 PRIDE:Q4H0T5 Uniprot:Q4H0T5
Length = 246
Score = 149 (57.5 bits), Expect = 1.6e-10, P = 1.6e-10
Identities = 28/130 (21%), Positives = 66/130 (50%)
Query: 49 PKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAKEKEI 108
PKKP++ Y +F + NP+ K E+ + +++ W+++ +++KK ++ Y + ++
Sbjct: 50 PKKPVSSYLRFSKEQLPIFKAENPDAKPTELIRRIAKLWRELPDSKKKIYQDAYRADWQV 109
Query: 109 YAQNVKKYHDELTPEAIEFLRXXXXXXXXXXXXXXXXXLFRETGKPKKPGNSFYLFIKDN 168
Y + + ++ ++LTP I L + GKPK+P +++ +++ +
Sbjct: 110 YKEKISRFKEQLTPSQITSLEKEIMDKHLKRKAMTKRKELTQLGKPKRPRSAYNVYVAEK 169
Query: 169 IDKKEYEGKS 178
+E +G S
Sbjct: 170 F--QEAKGDS 177
>UNIPROTKB|E9PKP7 [details] [associations]
symbol:UBTF "Nucleolar transcription factor 1" species:9606
"Homo sapiens" [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR009071 Pfam:PF00505 GO:GO:0005730 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 EMBL:AC004596
Pfam:PF09011 HGNC:HGNC:12511 ChiTaRS:UBTF IPI:IPI00979797
ProteinModelPortal:E9PKP7 SMR:E9PKP7 Ensembl:ENST00000527034
ArrayExpress:E9PKP7 Bgee:E9PKP7 Uniprot:E9PKP7
Length = 745
Score = 146 (56.5 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 25/81 (30%), Positives = 56/81 (69%)
Query: 46 PEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAKE 105
P+ PKKPLTPYF+F + R K + +P + +++TK++S+++K++ E +K + ++ +E
Sbjct: 109 PDFPKKPLTPYFRFFMEKRAKYAKLHPEMSNLDLTKILSKKYKELPEKKKMKYIQDFQRE 168
Query: 106 KEIYAQNVKKYHDELTPEAIE 126
K+ + +N+ ++ ++ P+ I+
Sbjct: 169 KQEFERNLARFRED-HPDLIQ 188
Score = 37 (18.1 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 5/15 (33%), Positives = 12/15 (80%)
Query: 153 KPKKPGNSFYLFIKD 167
KPK+P ++ ++F ++
Sbjct: 369 KPKRPVSAMFIFSEE 383
Score = 35 (17.4 bits), Expect = 2.6e-10, Sum P(2) = 2.6e-10
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 152 GKPKKPG-NSFYLFIKDNIDKKE 173
G+PKKP N + F ++ + E
Sbjct: 528 GEPKKPPMNGYQKFSQELLSNGE 550
>UNIPROTKB|Q969G3 [details] [associations]
symbol:SMARCE1 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily E member 1"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0007399 "nervous system development" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0047485 "protein N-terminus
binding" evidence=IPI] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0017053
"transcriptional repressor complex" evidence=IPI] [GO:0008080
"N-acetyltransferase activity" evidence=IDA] [GO:0016514 "SWI/SNF
complex" evidence=IDA] [GO:0071564 "npBAF complex" evidence=ISS]
[GO:0071565 "nBAF complex" evidence=ISS] [GO:0003682 "chromatin
binding" evidence=TAS] [GO:0000228 "nuclear chromosome"
evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0003713
"transcription coactivator activity" evidence=NAS] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=NAS] [GO:0006337 "nucleosome disassembly" evidence=IDA]
[GO:0006338 "chromatin remodeling" evidence=IDA] [GO:0016922
"ligand-dependent nuclear receptor binding" evidence=IPI]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR009071
PROSITE:PS00353 Pfam:PF00505 GO:GO:0017053 GO:GO:0045892
GO:GO:0007399 GO:GO:0003677 EMBL:CH471152 GO:GO:0006357
GO:GO:0003682 GO:GO:0006338 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0003713 GO:GO:0071564
GO:GO:0016514 GO:GO:0071565 Pathway_Interaction_DB:ar_tf_pathway
GO:GO:0008080 GO:GO:0006337 GO:GO:0000228 EMBL:AF035262
EMBL:BT007176 EMBL:AK001532 EMBL:AK095047 EMBL:BC007082
EMBL:BC011017 EMBL:BC063700 IPI:IPI00017669 IPI:IPI01018063
RefSeq:NP_003070.3 UniGene:Hs.740388 ProteinModelPortal:Q969G3
SMR:Q969G3 DIP:DIP-27614N DIP:DIP-33041N IntAct:Q969G3
MINT:MINT-1137973 STRING:Q969G3 PhosphoSite:Q969G3 DMDM:61247587
PaxDb:Q969G3 PRIDE:Q969G3 DNASU:6605 Ensembl:ENST00000348513
GeneID:6605 KEGG:hsa:6605 UCSC:uc002hux.2 CTD:6605
GeneCards:GC17M038781 HGNC:HGNC:11109 HPA:HPA003916 MIM:603111
neXtProt:NX_Q969G3 PharmGKB:PA35959 eggNOG:NOG291422
HOGENOM:HOG000230965 HOVERGEN:HBG054558 InParanoid:Q969G3 KO:K11651
OMA:EDESIPM OrthoDB:EOG4229K4 GenomeRNAi:6605 NextBio:25703
ArrayExpress:Q969G3 Bgee:Q969G3 CleanEx:HS_SMARCE1
Genevestigator:Q969G3 GermOnline:ENSG00000073584 Uniprot:Q969G3
Length = 411
Score = 155 (59.6 bits), Expect = 1.7e-10, P = 1.7e-10
Identities = 34/130 (26%), Positives = 62/130 (47%)
Query: 25 PHLNSVTTAGLKQQTSQPLSIPEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVS 84
P NS TA +P P+ P KPL PY ++ ++ +++ NP++K+ E+ K++
Sbjct: 45 PGTNSRVTASSGITIPKP---PKPPDKPLMPYMRYSRKVWDQVKASNPDLKLWEIGKIIG 101
Query: 85 EEWKKIGEAEKKRLENEYAKEKEIYAQNVKKYHDELTPEAIEFLRXXXXXXXXXXXXXXX 144
W+ + + EK+ NEY EK Y +++K YH+ +P + ++
Sbjct: 102 GMWRDLTDEEKQEYLNEYEAEKIEYNESMKAYHN--SPAYLAYINAKSRAEAALEEESRQ 159
Query: 145 XXLFRETGKP 154
E G+P
Sbjct: 160 RQSRMEKGEP 169
>MGI|MGI:1927347 [details] [associations]
symbol:Smarce1 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily e, member 1"
species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006337 "nucleosome
disassembly" evidence=ISO] [GO:0006338 "chromatin remodeling"
evidence=ISO] [GO:0007399 "nervous system development"
evidence=IEA] [GO:0008080 "N-acetyltransferase activity"
evidence=ISO] [GO:0016514 "SWI/SNF complex" evidence=ISO;IDA]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0016922
"ligand-dependent nuclear receptor binding" evidence=ISO]
[GO:0017053 "transcriptional repressor complex" evidence=ISO]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=ISO] [GO:0047485 "protein N-terminus binding"
evidence=ISO] [GO:0071564 "npBAF complex" evidence=IDA] [GO:0071565
"nBAF complex" evidence=IDA] InterPro:IPR009071 PROSITE:PS00353
MGI:MGI:1927347 Pfam:PF00505 GO:GO:0017053 GO:GO:0045892
GO:GO:0007399 GO:GO:0003677 GO:GO:0006338 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0071564
GO:GO:0016514 GO:GO:0071565 GO:GO:0008080 GO:GO:0006337 CTD:6605
eggNOG:NOG291422 HOGENOM:HOG000230965 HOVERGEN:HBG054558 KO:K11651
OMA:EDESIPM OrthoDB:EOG4229K4 EMBL:AF035263 EMBL:AK076177
EMBL:BC047141 EMBL:BC061498 EMBL:BC065043 IPI:IPI00119892
RefSeq:NP_065643.1 UniGene:Mm.379086 UniGene:Mm.389717
ProteinModelPortal:O54941 SMR:O54941 IntAct:O54941 STRING:O54941
PhosphoSite:O54941 PaxDb:O54941 PRIDE:O54941
Ensembl:ENSMUST00000103133 GeneID:57376 KEGG:mmu:57376
GeneTree:ENSGT00390000003628 InParanoid:O54941 ChiTaRS:SMARCE1
NextBio:313752 Bgee:O54941 Genevestigator:O54941
GermOnline:ENSMUSG00000037935 Uniprot:O54941
Length = 411
Score = 155 (59.6 bits), Expect = 1.7e-10, P = 1.7e-10
Identities = 34/130 (26%), Positives = 62/130 (47%)
Query: 25 PHLNSVTTAGLKQQTSQPLSIPEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVS 84
P NS TA +P P+ P KPL PY ++ ++ +++ NP++K+ E+ K++
Sbjct: 45 PGTNSRVTASSGITIPKP---PKPPDKPLMPYMRYSRKVWDQVKASNPDLKLWEIGKIIG 101
Query: 85 EEWKKIGEAEKKRLENEYAKEKEIYAQNVKKYHDELTPEAIEFLRXXXXXXXXXXXXXXX 144
W+ + + EK+ NEY EK Y +++K YH+ +P + ++
Sbjct: 102 GMWRDLTDEEKQEYLNEYEAEKIEYNESMKAYHN--SPAYLAYINAKSRAEAALEEESRQ 159
Query: 145 XXLFRETGKP 154
E G+P
Sbjct: 160 RQSRMEKGEP 169
>UNIPROTKB|F1NCC9 [details] [associations]
symbol:SMARCE1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0006337 "nucleosome disassembly" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA] [GO:0008080
"N-acetyltransferase activity" evidence=IEA] [GO:0016514 "SWI/SNF
complex" evidence=IEA] [GO:0016922 "ligand-dependent nuclear
receptor binding" evidence=IEA] [GO:0017053 "transcriptional
repressor complex" evidence=IEA] [GO:0045892 "negative regulation
of transcription, DNA-dependent" evidence=IEA] [GO:0047485 "protein
N-terminus binding" evidence=IEA] [GO:0071564 "npBAF complex"
evidence=IEA] [GO:0071565 "nBAF complex" evidence=IEA]
InterPro:IPR009071 Pfam:PF00505 GO:GO:0017053 GO:GO:0045892
GO:GO:0006338 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0071564 GO:GO:0016514 GO:GO:0071565
GO:GO:0008080 GO:GO:0006337 CTD:6605 KO:K11651 OMA:EDESIPM
GeneTree:ENSGT00390000003628 EMBL:AADN02068741 IPI:IPI00580760
RefSeq:NP_001006335.2 UniGene:Gga.6244 Ensembl:ENSGALT00000006174
GeneID:420047 KEGG:gga:420047 NextBio:20823013 Uniprot:F1NCC9
Length = 412
Score = 155 (59.6 bits), Expect = 1.7e-10, P = 1.7e-10
Identities = 34/130 (26%), Positives = 62/130 (47%)
Query: 25 PHLNSVTTAGLKQQTSQPLSIPEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVS 84
P NS TA +P P+ P KPL PY ++ ++ +++ NP++K+ E+ K++
Sbjct: 45 PGTNSRVTASSGITIPKP---PKPPDKPLMPYMRYSRKVWDQVKASNPDLKLWEIGKIIG 101
Query: 85 EEWKKIGEAEKKRLENEYAKEKEIYAQNVKKYHDELTPEAIEFLRXXXXXXXXXXXXXXX 144
W+ + + EK+ NEY EK Y +++K YH+ +P + ++
Sbjct: 102 GMWRDLTDEEKQEYLNEYEAEKIEYNESMKAYHN--SPAYLAYINAKSRAEAALEEESRQ 159
Query: 145 XXLFRETGKP 154
E G+P
Sbjct: 160 RQSRMEKGEP 169
>UNIPROTKB|A5PKF6 [details] [associations]
symbol:SMARCE1 "SMARCE1 protein" species:9913 "Bos taurus"
[GO:0071565 "nBAF complex" evidence=IEA] [GO:0071564 "npBAF
complex" evidence=IEA] [GO:0047485 "protein N-terminus binding"
evidence=IEA] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0017053 "transcriptional repressor
complex" evidence=IEA] [GO:0016922 "ligand-dependent nuclear
receptor binding" evidence=IEA] [GO:0016514 "SWI/SNF complex"
evidence=IEA] [GO:0008080 "N-acetyltransferase activity"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
[GO:0006337 "nucleosome disassembly" evidence=IEA]
InterPro:IPR009071 Pfam:PF00505 GO:GO:0017053 GO:GO:0045892
GO:GO:0006338 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0071564 GO:GO:0016514 GO:GO:0071565
GO:GO:0008080 GO:GO:0006337 CTD:6605 eggNOG:NOG291422
HOGENOM:HOG000230965 HOVERGEN:HBG054558 KO:K11651 OMA:EDESIPM
OrthoDB:EOG4229K4 GeneTree:ENSGT00390000003628 EMBL:DAAA02049142
EMBL:BC142470 IPI:IPI00854477 RefSeq:NP_001092586.1
UniGene:Bt.46178 STRING:A5PKF6 Ensembl:ENSBTAT00000020356
GeneID:540910 KEGG:bta:540910 InParanoid:A5PKF6 NextBio:20878909
Uniprot:A5PKF6
Length = 415
Score = 155 (59.6 bits), Expect = 1.7e-10, P = 1.7e-10
Identities = 34/130 (26%), Positives = 62/130 (47%)
Query: 25 PHLNSVTTAGLKQQTSQPLSIPEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVS 84
P NS TA +P P+ P KPL PY ++ ++ +++ NP++K+ E+ K++
Sbjct: 45 PGTNSRVTASSGITIPKP---PKPPDKPLMPYMRYSRKVWDQVKASNPDLKLWEIGKIIG 101
Query: 85 EEWKKIGEAEKKRLENEYAKEKEIYAQNVKKYHDELTPEAIEFLRXXXXXXXXXXXXXXX 144
W+ + + EK+ NEY EK Y +++K YH+ +P + ++
Sbjct: 102 GMWRDLTDEEKQEYLNEYEAEKIEYNESMKAYHN--SPAYLAYINAKSRAEAALEEESRQ 159
Query: 145 XXLFRETGKP 154
E G+P
Sbjct: 160 RQSRMEKGEP 169
>UNIPROTKB|P17480 [details] [associations]
symbol:UBTF "Nucleolar transcription factor 1" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0001832
"blastocyst growth" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0007566 "embryo implantation" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0045943 "positive
regulation of transcription from RNA polymerase I promoter"
evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS;IDA] [GO:0006356
"regulation of transcription from RNA polymerase I promoter"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006360
"transcription from RNA polymerase I promoter" evidence=TAS]
[GO:0006361 "transcription initiation from RNA polymerase I
promoter" evidence=TAS] [GO:0006362 "transcription elongation from
RNA polymerase I promoter" evidence=TAS] [GO:0006363 "termination
of RNA polymerase I transcription" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] Reactome:REACT_71 InterPro:IPR009071
Pfam:PF00505 GO:GO:0005654 GO:GO:0005730 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Reactome:REACT_1788 GO:GO:0006363 GO:GO:0006362 GO:GO:0006361
Pfam:PF09011 GO:GO:0045943 KO:K09273 eggNOG:NOG327891
HOVERGEN:HBG008708 EMBL:X53390 EMBL:X53461 EMBL:X56687
EMBL:AK291733 EMBL:AK292518 EMBL:BC042297 IPI:IPI00014533
IPI:IPI00220833 PIR:S09318 PIR:S18193 RefSeq:NP_001070151.1
RefSeq:NP_001070152.1 RefSeq:NP_055048.1 UniGene:Hs.89781 PDB:1K99
PDB:1L8Y PDB:1L8Z PDB:2HDZ PDBsum:1K99 PDBsum:1L8Y PDBsum:1L8Z
PDBsum:2HDZ ProteinModelPortal:P17480 SMR:P17480 DIP:DIP-640N
IntAct:P17480 MINT:MINT-1348764 STRING:P17480 PhosphoSite:P17480
DMDM:136652 PaxDb:P17480 PRIDE:P17480 Ensembl:ENST00000302904
Ensembl:ENST00000343638 Ensembl:ENST00000393606
Ensembl:ENST00000436088 Ensembl:ENST00000526094
Ensembl:ENST00000529383 Ensembl:ENST00000533177 GeneID:7343
KEGG:hsa:7343 UCSC:uc002igc.3 UCSC:uc010czs.3 CTD:7343
GeneCards:GC17M042282 HGNC:HGNC:12511 HPA:CAB004611 HPA:HPA006385
MIM:600673 neXtProt:NX_P17480 PharmGKB:PA37158 HOGENOM:HOG000232068
InParanoid:P17480 OMA:CSQRWKL OrthoDB:EOG4V9TQ9 PhylomeDB:P17480
ChiTaRS:UBTF EvolutionaryTrace:P17480 GenomeRNAi:7343 NextBio:28746
ArrayExpress:P17480 Bgee:P17480 CleanEx:HS_UBTF
Genevestigator:P17480 GermOnline:ENSG00000108312 Uniprot:P17480
Length = 764
Score = 146 (56.5 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
Identities = 25/81 (30%), Positives = 56/81 (69%)
Query: 46 PEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAKE 105
P+ PKKPLTPYF+F + R K + +P + +++TK++S+++K++ E +K + ++ +E
Sbjct: 109 PDFPKKPLTPYFRFFMEKRAKYAKLHPEMSNLDLTKILSKKYKELPEKKKMKYIQDFQRE 168
Query: 106 KEIYAQNVKKYHDELTPEAIE 126
K+ + +N+ ++ ++ P+ I+
Sbjct: 169 KQEFERNLARFRED-HPDLIQ 188
Score = 37 (18.1 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
Identities = 5/15 (33%), Positives = 12/15 (80%)
Query: 153 KPKKPGNSFYLFIKD 167
KPK+P ++ ++F ++
Sbjct: 406 KPKRPVSAMFIFSEE 420
Score = 35 (17.4 bits), Expect = 2.8e-10, Sum P(2) = 2.8e-10
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 152 GKPKKPG-NSFYLFIKDNIDKKE 173
G+PKKP N + F ++ + E
Sbjct: 565 GEPKKPPMNGYQKFSQELLSNGE 587
>RGD|3927 [details] [associations]
symbol:Ubtf "upstream binding transcription factor, RNA polymerase
I" species:10116 "Rattus norvegicus" [GO:0000183 "chromatin silencing
at rDNA" evidence=IEA;ISO] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO;ISS] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0045943 "positive regulation of transcription from
RNA polymerase I promoter" evidence=ISO;ISS] InterPro:IPR009071
Pfam:PF00505 RGD:3927 GO:GO:0005730 GO:GO:0003677 GO:GO:0006351
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0000183 Pfam:PF09011 GO:GO:0045943 KO:K09273 eggNOG:NOG327891
HOVERGEN:HBG008708 CTD:7343 HOGENOM:HOG000232068 OMA:CSQRWKL
OrthoDB:EOG4V9TQ9 EMBL:M61726 EMBL:M61725 IPI:IPI00194555
IPI:IPI00388681 PIR:A40439 PIR:B40439 RefSeq:NP_001099193.2
RefSeq:NP_001121162.1 UniGene:Rn.22469 ProteinModelPortal:P25977
SMR:P25977 STRING:P25977 PhosphoSite:P25977 PRIDE:P25977
Ensembl:ENSRNOT00000048418 Ensembl:ENSRNOT00000064283 GeneID:25574
KEGG:rno:25574 UCSC:RGD:3927 GeneTree:ENSGT00530000063934
InParanoid:P25977 NextBio:607201 ArrayExpress:P25977
Genevestigator:P25977 GermOnline:ENSRNOG00000020937 Uniprot:P25977
Length = 764
Score = 146 (56.5 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
Identities = 25/81 (30%), Positives = 56/81 (69%)
Query: 46 PEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAKE 105
P+ PKKPLTPYF+F + R K + +P + +++TK++S+++K++ E +K + ++ +E
Sbjct: 109 PDFPKKPLTPYFRFFMEKRAKYAKLHPEMSNLDLTKILSKKYKELPEKKKMKYIQDFQRE 168
Query: 106 KEIYAQNVKKYHDELTPEAIE 126
K+ + +N+ ++ ++ P+ I+
Sbjct: 169 KQEFERNLARFRED-HPDLIQ 188
Score = 37 (18.1 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
Identities = 5/15 (33%), Positives = 12/15 (80%)
Query: 153 KPKKPGNSFYLFIKD 167
KPK+P ++ ++F ++
Sbjct: 406 KPKRPVSAMFIFSEE 420
Score = 35 (17.4 bits), Expect = 2.8e-10, Sum P(2) = 2.8e-10
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 152 GKPKKPG-NSFYLFIKDNIDKKE 173
G+PKKP N + F ++ + E
Sbjct: 565 GEPKKPPMNGYQKFSQELLSNGE 587
>MGI|MGI:98512 [details] [associations]
symbol:Ubtf "upstream binding transcription factor, RNA
polymerase I" species:10090 "Mus musculus" [GO:0000183 "chromatin
silencing at rDNA" evidence=IMP] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0045943 "positive regulation of
transcription from RNA polymerase I promoter" evidence=IDA]
InterPro:IPR009071 MGI:MGI:98512 Pfam:PF00505 GO:GO:0005730
GO:GO:0003677 GO:GO:0006351 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0000183 Pfam:PF09011
GO:GO:0045943 eggNOG:NOG327891 HOVERGEN:HBG008708
HOGENOM:HOG000232068 EMBL:X60831 IPI:IPI00114869 IPI:IPI00223407
PIR:S22314 UniGene:Mm.2845 PDB:1V63 PDB:1V64 PDB:1WGF PDBsum:1V63
PDBsum:1V64 PDBsum:1WGF ProteinModelPortal:P25976 SMR:P25976
DIP:DIP-29977N MINT:MINT-4084181 STRING:P25976 PhosphoSite:P25976
PaxDb:P25976 PRIDE:P25976 InParanoid:P25976
EvolutionaryTrace:P25976 Genevestigator:P25976
GermOnline:ENSMUSG00000020923 Uniprot:P25976
Length = 765
Score = 146 (56.5 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
Identities = 25/81 (30%), Positives = 56/81 (69%)
Query: 46 PEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAKE 105
P+ PKKPLTPYF+F + R K + +P + +++TK++S+++K++ E +K + ++ +E
Sbjct: 109 PDFPKKPLTPYFRFFMEKRAKYAKLHPEMSNLDLTKILSKKYKELPEKKKMKYIQDFQRE 168
Query: 106 KEIYAQNVKKYHDELTPEAIE 126
K+ + +N+ ++ ++ P+ I+
Sbjct: 169 KQEFERNLARFRED-HPDLIQ 188
Score = 37 (18.1 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
Identities = 5/15 (33%), Positives = 12/15 (80%)
Query: 153 KPKKPGNSFYLFIKD 167
KPK+P ++ ++F ++
Sbjct: 406 KPKRPVSAMFIFSEE 420
Score = 35 (17.4 bits), Expect = 2.8e-10, Sum P(2) = 2.8e-10
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 152 GKPKKPG-NSFYLFIKDNIDKKE 173
G+PKKP N + F ++ + E
Sbjct: 565 GEPKKPPMNGYQKFSQELLSNGE 587
>UNIPROTKB|F1NLS2 [details] [associations]
symbol:TFAM "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003682 "chromatin binding" evidence=IEA] [GO:0006391
"transcription initiation from mitochondrial promoter"
evidence=IEA] [GO:0033108 "mitochondrial respiratory chain complex
assembly" evidence=IEA] [GO:0042645 "mitochondrial nucleoid"
evidence=IEA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0070363 "mitochondrial light
strand promoter sense binding" evidence=IEA] InterPro:IPR009071
Pfam:PF00505 GO:GO:0045893 GO:GO:0003682 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0042645
GO:GO:0033108 GO:GO:0006391 GO:GO:0070363 OMA:YENEMKS
GeneTree:ENSGT00440000039001 EMBL:AADN02035299 IPI:IPI00588565
Ensembl:ENSGALT00000041096 ArrayExpress:F1NLS2 Uniprot:F1NLS2
Length = 264
Score = 148 (57.2 bits), Expect = 2.9e-10, P = 2.9e-10
Identities = 30/131 (22%), Positives = 61/131 (46%)
Query: 43 LSIPEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEY 102
+S E+PK+PL+ YF+F + ++NP + +E+ K ++ W+++ ++K+ E
Sbjct: 41 MSSAERPKRPLSAYFRFLRDNQPAFRQQNPELNSLELVKKLAGVWRELPASQKQVYEEAR 100
Query: 103 AKEKEIYAQNVKKYHDELTPEAIEFLRXXXXXXXXXXXXXXXXXLFRETGKPKKPGNSFY 162
+ Y + + Y +LTP L+ GKPK+P + F
Sbjct: 101 KTDWRKYEEQLAAYKAQLTPAQAAALKEERRKRLAKRRSFRIKRELTVLGKPKRPRSGFN 160
Query: 163 LFIKDNIDKKE 173
+F+ +N + +
Sbjct: 161 IFVSENFQQSK 171
>RGD|1304726 [details] [associations]
symbol:Smarce1 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily e, member 1"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0006337
"nucleosome disassembly" evidence=ISO] [GO:0006338 "chromatin
remodeling" evidence=ISO] [GO:0007399 "nervous system development"
evidence=IEA] [GO:0008080 "N-acetyltransferase activity"
evidence=ISO] [GO:0016514 "SWI/SNF complex" evidence=ISO]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0016922
"ligand-dependent nuclear receptor binding" evidence=ISO]
[GO:0017053 "transcriptional repressor complex" evidence=ISO]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=ISO] [GO:0047485 "protein N-terminus binding"
evidence=ISO] [GO:0071564 "npBAF complex" evidence=ISO] [GO:0071565
"nBAF complex" evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR009071 PROSITE:PS00353 Pfam:PF00505 RGD:1304726
GO:GO:0005634 GO:GO:0007399 GO:GO:0003677 GO:GO:0016568
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
UniGene:Rn.10829 HOVERGEN:HBG054558 KO:K11651 EMBL:BC091314
EMBL:BC092210 EMBL:EU327027 EMBL:EU327028 EMBL:EU327029
EMBL:EU327030 EMBL:EU327031 IPI:IPI00370983 RefSeq:NP_001020164.1
UniGene:Rn.8513 ProteinModelPortal:Q56A18 STRING:Q56A18
GeneID:303518 KEGG:rno:303518 InParanoid:Q56A18 NextBio:651503
Genevestigator:Q56A18 Uniprot:Q56A18
Length = 376
Score = 152 (58.6 bits), Expect = 2.9e-10, P = 2.9e-10
Identities = 31/118 (26%), Positives = 60/118 (50%)
Query: 40 SQPLSIPEKPK---KPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKK 96
S ++IP+ PK KPL PY ++ ++ +++ NP++K+ E+ K++ W+ + + EK+
Sbjct: 19 SSGITIPKPPKPPDKPLMPYMRYSRKVWDQVKASNPDLKLWEIGKIIGGMWRDLTDEEKQ 78
Query: 97 RLENEYAKEKEIYAQNVKKYHDELTPEAIEFLRXXXXXXXXXXXXXXXXXLFRETGKP 154
NEY EK Y +++K YH+ +P + ++ E G+P
Sbjct: 79 EYLNEYEAEKIEYNESMKAYHN--SPAYLAYINAKSRAEAALEEESRQRQSRMEKGEP 134
>UNIPROTKB|C9J8X5 [details] [associations]
symbol:HMG20B "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily E member
1-related" species:9606 "Homo sapiens" [GO:0033234 "negative
regulation of protein sumoylation" evidence=IEA] [GO:0045666
"positive regulation of neuron differentiation" evidence=IEA]
[GO:0046982 "protein heterodimerization activity" evidence=IEA]
InterPro:IPR009071 Pfam:PF00505 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 EMBL:AC005786 HOGENOM:HOG000247029
OrthoDB:EOG4G7C05 HGNC:HGNC:5002 ChiTaRS:HMG20B EMBL:AC116968
IPI:IPI00877739 ProteinModelPortal:C9J8X5 SMR:C9J8X5 STRING:C9J8X5
Ensembl:ENST00000416526 ArrayExpress:C9J8X5 Bgee:C9J8X5
Uniprot:C9J8X5
Length = 215
Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
Identities = 25/72 (34%), Positives = 44/72 (61%)
Query: 45 IPEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAK 104
+P PK P+T Y +F + R +I R+P++ E+TK++ EW K+ EK+R +E +
Sbjct: 66 LPNGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPTEKQRYLDEAER 125
Query: 105 EKEIYAQNVKKY 116
EK+ Y + ++ Y
Sbjct: 126 EKQQYMKELRAY 137
>UNIPROTKB|C9JQA7 [details] [associations]
symbol:HMG20B "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily E member
1-related" species:9606 "Homo sapiens" [GO:0033234 "negative
regulation of protein sumoylation" evidence=IEA] [GO:0045666
"positive regulation of neuron differentiation" evidence=IEA]
[GO:0046982 "protein heterodimerization activity" evidence=IEA]
InterPro:IPR009071 Pfam:PF00505 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 EMBL:AC005786 HOGENOM:HOG000247029
HGNC:HGNC:5002 ChiTaRS:HMG20B EMBL:AC116968 IPI:IPI00878211
ProteinModelPortal:C9JQA7 SMR:C9JQA7 STRING:C9JQA7
Ensembl:ENST00000453933 ArrayExpress:C9JQA7 Bgee:C9JQA7
Uniprot:C9JQA7
Length = 142
Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
Identities = 25/72 (34%), Positives = 44/72 (61%)
Query: 45 IPEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAK 104
+P PK P+T Y +F + R +I R+P++ E+TK++ EW K+ EK+R +E +
Sbjct: 66 LPNGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPTEKQRYLDEAER 125
Query: 105 EKEIYAQNVKKY 116
EK+ Y + ++ Y
Sbjct: 126 EKQQYMKELRAY 137
>UNIPROTKB|P25980 [details] [associations]
symbol:ubtf-b "Nucleolar transcription factor 1-B"
species:8355 "Xenopus laevis" [GO:0005730 "nucleolus" evidence=ISS]
[GO:0045943 "positive regulation of transcription from RNA
polymerase I promoter" evidence=ISS] InterPro:IPR009071
Pfam:PF00505 GO:GO:0005730 GO:GO:0003677 GO:GO:0006351
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 GO:GO:0045943 KO:K09273 HOVERGEN:HBG008708 EMBL:X57561
EMBL:X59863 PIR:S17196 PIR:S78454 RefSeq:NP_001079429.1
UniGene:Xl.31219 ProteinModelPortal:P25980 SMR:P25980 GeneID:379116
KEGG:xla:379116 CTD:379116 Xenbase:XB-GENE-966569 Uniprot:P25980
Length = 701
Score = 152 (58.6 bits), Expect = 8.5e-10, P = 8.5e-10
Identities = 26/74 (35%), Positives = 52/74 (70%)
Query: 46 PEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAKE 105
PE PKKPLTPYF+F + R K + +P + +++TK++S+++K++ E +K + ++ +E
Sbjct: 109 PEFPKKPLTPYFRFFMEKRAKYAKLHPEMSNLDLTKILSKKYKELPEKKKMKYIQDFQRE 168
Query: 106 KEIYAQNVKKYHDE 119
K+ + +N+ K+ +E
Sbjct: 169 KQDFERNMAKFREE 182
>UNIPROTKB|E2R4Z8 [details] [associations]
symbol:HMG20B "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0046982 "protein heterodimerization activity"
evidence=IEA] [GO:0045666 "positive regulation of neuron
differentiation" evidence=IEA] [GO:0033234 "negative regulation of
protein sumoylation" evidence=IEA] InterPro:IPR009071 Pfam:PF00505
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GeneTree:ENSGT00700000104521 OMA:RLRKMNT EMBL:AAEX03012575
EMBL:AAEX03012576 Ensembl:ENSCAFT00000030501 Uniprot:E2R4Z8
Length = 316
Score = 146 (56.5 bits), Expect = 8.8e-10, P = 8.8e-10
Identities = 26/72 (36%), Positives = 45/72 (62%)
Query: 45 IPEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAK 104
+P PK P+T Y +F + R +I R+P++ E+TK++ EW K+ AEK+R +E +
Sbjct: 66 LPNGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPAEKQRYLDEAER 125
Query: 105 EKEIYAQNVKKY 116
EK+ Y + ++ Y
Sbjct: 126 EKQQYMKELRAY 137
>UNIPROTKB|Q32L68 [details] [associations]
symbol:HMG20B "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily E member
1-related" species:9913 "Bos taurus" [GO:0005694 "chromosome"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0016568
"chromatin modification" evidence=IEA] [GO:0007049 "cell cycle"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR009071 PROSITE:PS00353 Pfam:PF00505
GO:GO:0005634 GO:GO:0005694 GO:GO:0006355 GO:GO:0003677
GO:GO:0006351 GO:GO:0016568 eggNOG:COG5648 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0007049
HOGENOM:HOG000247029 HOVERGEN:HBG059870 EMBL:BC109740
IPI:IPI00703994 RefSeq:NP_001033143.1 UniGene:Bt.62699 HSSP:P48431
ProteinModelPortal:Q32L68 SMR:Q32L68 STRING:Q32L68 PRIDE:Q32L68
GeneID:507723 KEGG:bta:507723 CTD:10362 InParanoid:Q32L68
OrthoDB:EOG4G7C05 NextBio:20868195 Uniprot:Q32L68
Length = 317
Score = 146 (56.5 bits), Expect = 8.9e-10, P = 8.9e-10
Identities = 26/72 (36%), Positives = 45/72 (62%)
Query: 45 IPEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAK 104
+P PK P+T Y +F + R +I R+P++ E+TK++ EW K+ AEK+R +E +
Sbjct: 66 LPNGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPAEKQRYLDEAER 125
Query: 105 EKEIYAQNVKKY 116
EK+ Y + ++ Y
Sbjct: 126 EKQQYMKELRAY 137
>MGI|MGI:1341190 [details] [associations]
symbol:Hmg20b "high mobility group 20B" species:10090 "Mus
musculus" [GO:0000400 "four-way junction DNA binding" evidence=ISA]
[GO:0000794 "condensed nuclear chromosome" evidence=ISA]
[GO:0002111 "BRCA2-BRAF35 complex" evidence=ISA] [GO:0003677 "DNA
binding" evidence=TAS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=NAS] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=NAS]
[GO:0005694 "chromosome" evidence=IEA] [GO:0006325 "chromatin
organization" evidence=NAS] [GO:0006338 "chromatin remodeling"
evidence=TAS] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=NAS] [GO:0007049 "cell cycle" evidence=IEA]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0033234
"negative regulation of protein sumoylation" evidence=IDA]
[GO:0035914 "skeletal muscle cell differentiation" evidence=IMP]
[GO:0045666 "positive regulation of neuron differentiation"
evidence=IGI] [GO:0046982 "protein heterodimerization activity"
evidence=IPI] InterPro:IPR009071 PROSITE:PS00353 MGI:MGI:1341190
Pfam:PF00505 GO:GO:0005694 GO:GO:0003700 GO:GO:0006351
GO:GO:0006338 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0007049 GO:GO:0045666 GO:GO:0035914
GO:GO:0033234 HOGENOM:HOG000247029 HOVERGEN:HBG059870
GeneTree:ENSGT00700000104521 CTD:10362 OrthoDB:EOG4G7C05
OMA:RLRKMNT ChiTaRS:HMG20B EMBL:AF067430 EMBL:AF146224
EMBL:AL355734 EMBL:AL355735 EMBL:BC011334 IPI:IPI00323315
RefSeq:NP_001156637.1 RefSeq:NP_001156638.1 RefSeq:NP_034570.1
UniGene:Mm.38474 PDB:2CRJ PDBsum:2CRJ ProteinModelPortal:Q9Z104
SMR:Q9Z104 IntAct:Q9Z104 STRING:Q9Z104 PhosphoSite:Q9Z104
PRIDE:Q9Z104 Ensembl:ENSMUST00000020454 Ensembl:ENSMUST00000105323
Ensembl:ENSMUST00000105324 Ensembl:ENSMUST00000167481 GeneID:15353
KEGG:mmu:15353 eggNOG:NOG241877 InParanoid:Q9Z104
EvolutionaryTrace:Q9Z104 NextBio:287960 Bgee:Q9Z104
CleanEx:MM_HMG20B Genevestigator:Q9Z104
GermOnline:ENSMUSG00000020232 GO:GO:0002111 GO:GO:0000400
Uniprot:Q9Z104
Length = 317
Score = 144 (55.7 bits), Expect = 1.5e-09, P = 1.5e-09
Identities = 27/72 (37%), Positives = 44/72 (61%)
Query: 45 IPEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAK 104
+P PK P+T Y +F + R +I R+P++ E+TK++ EW K+ AEK+R +E K
Sbjct: 66 LPNGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPAEKQRYLDEAEK 125
Query: 105 EKEIYAQNVKKY 116
EK+ Y + + Y
Sbjct: 126 EKQQYLKELWAY 137
>RGD|1309235 [details] [associations]
symbol:Hmg20b "high mobility group 20 B" species:10116 "Rattus
norvegicus" [GO:0033234 "negative regulation of protein
sumoylation" evidence=IEA;ISO] [GO:0035914 "skeletal muscle cell
differentiation" evidence=ISO] [GO:0045666 "positive regulation of
neuron differentiation" evidence=IEA;ISO] [GO:0046982 "protein
heterodimerization activity" evidence=IEA;ISO] InterPro:IPR009071
Pfam:PF00505 RGD:1309235 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 EMBL:CH474029
GeneTree:ENSGT00700000104521 CTD:10362 OrthoDB:EOG4G7C05
OMA:RLRKMNT IPI:IPI00365950 RefSeq:NP_001102201.1 UniGene:Rn.162912
Ensembl:ENSRNOT00000028002 GeneID:362825 KEGG:rno:362825
UCSC:RGD:1309235 NextBio:681393 Uniprot:D4A586
Length = 318
Score = 144 (55.7 bits), Expect = 1.5e-09, P = 1.5e-09
Identities = 27/72 (37%), Positives = 44/72 (61%)
Query: 45 IPEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAK 104
+P PK P+T Y +F + R +I R+P++ E+TK++ EW K+ AEK+R +E K
Sbjct: 66 LPNGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPAEKQRYLDEAEK 125
Query: 105 EKEIYAQNVKKY 116
EK+ Y + + Y
Sbjct: 126 EKQQYLKELWAY 137
>FB|FBgn0030093 [details] [associations]
symbol:dalao "dalao" species:7227 "Drosophila melanogaster"
[GO:0003713 "transcription coactivator activity" evidence=IC]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IDA] [GO:0035060 "brahma complex" evidence=NAS;IDA;IPI]
[GO:0005515 "protein binding" evidence=IPI] [GO:0003677 "DNA
binding" evidence=ISS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0006338 "chromatin remodeling" evidence=IGI;IPI]
InterPro:IPR009071 Pfam:PF00505 GO:GO:0045893 GO:GO:0006338
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0035060 HSSP:P07155 EMBL:AF348329 ProteinModelPortal:Q9BIW6
DIP:DIP-36731N IntAct:Q9BIW6 STRING:Q9BIW6 PRIDE:Q9BIW6
FlyBase:FBgn0030093 InParanoid:Q9BIW6 ArrayExpress:Q9BIW6
Bgee:Q9BIW6 Uniprot:Q9BIW6
Length = 749
Score = 150 (57.9 bits), Expect = 1.5e-09, P = 1.5e-09
Identities = 33/115 (28%), Positives = 59/115 (51%)
Query: 8 TGVFTGGNVFNLRSCLMPHLNSVTTAGLKQQTSQPLSIPEKPKKPLTPYFKFQGQIRNKI 67
T +FT N N P + +++ Q S+ P+ P+KP+ PY ++ ++ + +
Sbjct: 50 TPIFTHSNYGN--PAFTPQKVTKSSSSKNQNESRLPKPPKPPEKPILPYMRYSKRVWDSV 107
Query: 68 MERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAKEKEIYAQNVKKYHDELTP 122
++P +K+ E+ K + WK + E EK +EY EK Y +++K YH TP
Sbjct: 108 KAKHPELKLWELGKKIGAMWKLLPEDEKTEFIDEYEAEKLEYEKSLKAYHQ--TP 160
>UNIPROTKB|Q9P0W2 [details] [associations]
symbol:HMG20B "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily E member
1-related" species:9606 "Homo sapiens" [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0007049 "cell cycle" evidence=IEA]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0033234
"negative regulation of protein sumoylation" evidence=IEA]
[GO:0045666 "positive regulation of neuron differentiation"
evidence=IEA] [GO:0046982 "protein heterodimerization activity"
evidence=IEA] [GO:0005694 "chromosome" evidence=IEA] [GO:0005634
"nucleus" evidence=NAS] [GO:0003677 "DNA binding" evidence=NAS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=NAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=NAS] [GO:0006325 "chromatin organization"
evidence=NAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0007596
"blood coagulation" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] Reactome:REACT_604 InterPro:IPR009071 PROSITE:PS00353
EMBL:AF331191 Pfam:PF00505 GO:GO:0005694 GO:GO:0005654
GO:GO:0003677 GO:GO:0007596 GO:GO:0003700 GO:GO:0006351
GO:GO:0016568 eggNOG:COG5648 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0007049 EMBL:CH471139
GO:GO:0006325 EMBL:AC005786 HOVERGEN:HBG059870 CTD:10362
EMBL:AF146223 EMBL:AL355709 EMBL:AF288679 EMBL:AF072165
EMBL:AK090733 EMBL:BC002552 EMBL:BC003505 EMBL:BC004408
EMBL:BC021585 EMBL:AF072836 EMBL:CR456754 IPI:IPI00464951
IPI:IPI00478316 IPI:IPI00929221 RefSeq:NP_006330.2
UniGene:Hs.406534 ProteinModelPortal:Q9P0W2 SMR:Q9P0W2
IntAct:Q9P0W2 MINT:MINT-1372120 STRING:Q9P0W2 PhosphoSite:Q9P0W2
DMDM:57012878 PRIDE:Q9P0W2 DNASU:10362 Ensembl:ENST00000333651
GeneID:10362 KEGG:hsa:10362 UCSC:uc002lya.3 GeneCards:GC19P003572
HGNC:HGNC:5002 MIM:605535 neXtProt:NX_Q9P0W2 PharmGKB:PA29332
InParanoid:Q9P0W2 OMA:RLRKMNT ChiTaRS:HMG20B GenomeRNAi:10362
NextBio:39281 ArrayExpress:Q9P0W2 Bgee:Q9P0W2 CleanEx:HS_HMG20B
Genevestigator:Q9P0W2 GermOnline:ENSG00000064961 Uniprot:Q9P0W2
Length = 317
Score = 142 (55.0 bits), Expect = 2.5e-09, P = 2.5e-09
Identities = 25/72 (34%), Positives = 44/72 (61%)
Query: 45 IPEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAK 104
+P PK P+T Y +F + R +I R+P++ E+TK++ EW K+ EK+R +E +
Sbjct: 66 LPNGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPTEKQRYLDEAER 125
Query: 105 EKEIYAQNVKKY 116
EK+ Y + ++ Y
Sbjct: 126 EKQQYMKELRAY 137
>UNIPROTKB|F1STP6 [details] [associations]
symbol:LOC100623257 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0010468 "regulation of gene expression"
evidence=IEA] [GO:0007566 "embryo implantation" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0001832 "blastocyst growth" evidence=IEA]
InterPro:IPR009071 Pfam:PF00505 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GeneTree:ENSGT00530000063934
OMA:LTAYIRF EMBL:FP565680 Ensembl:ENSSSCT00000016286 Uniprot:F1STP6
Length = 383
Score = 142 (55.0 bits), Expect = 3.8e-09, P = 3.8e-09
Identities = 24/74 (32%), Positives = 50/74 (67%)
Query: 46 PEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAKE 105
P+ PKKPLT Y +F ++R + ++++P + E+TK++SEE+KK+ E K + ++ KE
Sbjct: 97 PDFPKKPLTSYIRFFTEMRPQYLQKHPQLSNQELTKVLSEEYKKLPEQMKLKYTQDFQKE 156
Query: 106 KEIYAQNVKKYHDE 119
K+ + + + ++ ++
Sbjct: 157 KQEFEEKMAQFKEQ 170
>UNIPROTKB|P40618 [details] [associations]
symbol:HMGB3 "High mobility group protein B3" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005694 "chromosome" evidence=IEA]
InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
GO:GO:0005634 GO:GO:0005694 GO:GO:0003677 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 Pfam:PF09011
HOVERGEN:HBG009000 UniGene:Gga.4513 CTD:3149 KO:K11296 EMBL:X63463
IPI:IPI00580706 PIR:S22359 RefSeq:NP_990626.2
ProteinModelPortal:P40618 SMR:P40618 STRING:P40618 GeneID:396232
KEGG:gga:396232 NextBio:20816284 Uniprot:P40618
Length = 202
Score = 134 (52.2 bits), Expect = 4.7e-09, P = 4.7e-09
Identities = 27/71 (38%), Positives = 39/71 (54%)
Query: 46 PEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAKE 105
P PK+P + +F F + R KI NP I I +V K + E W + + EK+ N+ AK
Sbjct: 90 PNAPKRPPSAFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLSDGEKQPYNNKAAKL 149
Query: 106 KEIYAQNVKKY 116
KE Y ++V Y
Sbjct: 150 KEKYEKDVADY 160
Score = 96 (38.9 bits), Expect = 8.4e-05, Sum P(2) = 8.4e-05
Identities = 23/74 (31%), Positives = 39/74 (52%)
Query: 46 PEKPKKPLTPYFKFQGQIRNKIMERNPNIKI--IEVTKLVSEEWKKIGEAEKKRLENEYA 103
P+KPK ++ Y F R + ++NP + + E +K SE WK + EK + + E A
Sbjct: 6 PKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSSKEKAKFD-EMA 64
Query: 104 KEKEI-YAQNVKKY 116
K ++ Y + +K Y
Sbjct: 65 KADKVRYDREMKDY 78
Score = 43 (20.2 bits), Expect = 8.4e-05, Sum P(2) = 8.4e-05
Identities = 6/19 (31%), Positives = 13/19 (68%)
Query: 149 RETGKPKKPGNSFYLFIKD 167
++ PK+P ++F+LF +
Sbjct: 88 KDPNAPKRPPSAFFLFCSE 106
>UNIPROTKB|F1N8B1 [details] [associations]
symbol:LOC100857252 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0045665 "negative regulation of neuron
differentiation" evidence=IEA] [GO:0046982 "protein
heterodimerization activity" evidence=IEA] InterPro:IPR009071
Pfam:PF00505 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 IPI:IPI00571034 OMA:DKERYMR
GeneTree:ENSGT00700000104521 EMBL:AADN02040486 EMBL:AADN02040487
EMBL:AADN02040488 EMBL:AADN02040489 EMBL:AADN02074740
EMBL:AADN02074741 EMBL:AADN02074742 EMBL:AADN02074743
Ensembl:ENSGALT00000004328 ArrayExpress:F1N8B1 Uniprot:F1N8B1
Length = 348
Score = 140 (54.3 bits), Expect = 5.1e-09, P = 5.1e-09
Identities = 24/80 (30%), Positives = 46/80 (57%)
Query: 37 QQTSQPLSIPEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKK 96
++ +PL PK PLT Y +F + R ++ + P + E+T+++ EW K+ EK+
Sbjct: 92 RKRKKPLRDSNAPKSPLTGYVRFMNERREQLRAKRPEVPFPEITRMLGNEWSKLPPEEKR 151
Query: 97 RLENEYAKEKEIYAQNVKKY 116
R +E ++KE Y + +++Y
Sbjct: 152 RYLDEADRDKERYMRELEQY 171
>UNIPROTKB|Q5ZKF4 [details] [associations]
symbol:HMG20A "High mobility group protein 20A"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR009071 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 GO:GO:0006351 eggNOG:COG5648
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
EMBL:AJ720130 IPI:IPI00571034 RefSeq:NP_001025565.1
UniGene:Gga.15892 ProteinModelPortal:Q5ZKF4 SMR:Q5ZKF4
GeneID:415346 KEGG:gga:415346 CTD:10363 HOGENOM:HOG000247029
HOVERGEN:HBG059870 InParanoid:Q5ZKF4 NextBio:20818969
Uniprot:Q5ZKF4
Length = 348
Score = 140 (54.3 bits), Expect = 5.1e-09, P = 5.1e-09
Identities = 24/80 (30%), Positives = 46/80 (57%)
Query: 37 QQTSQPLSIPEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKK 96
++ +PL PK PLT Y +F + R ++ + P + E+T+++ EW K+ EK+
Sbjct: 92 RKRKKPLRDSNAPKSPLTGYVRFMNERREQLRAKRPEVPFPEITRMLGNEWSKLPPEEKR 151
Query: 97 RLENEYAKEKEIYAQNVKKY 116
R +E ++KE Y + +++Y
Sbjct: 152 RYLDEADRDKERYMRELEQY 171
>UNIPROTKB|J9NVS3 [details] [associations]
symbol:HMGB3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 GeneTree:ENSGT00560000076717 OMA:DNEKQPY
EMBL:AAEX03027044 EMBL:AAEX03027045 Ensembl:ENSCAFT00000045229
Uniprot:J9NVS3
Length = 219
Score = 134 (52.2 bits), Expect = 5.2e-09, P = 5.2e-09
Identities = 27/71 (38%), Positives = 40/71 (56%)
Query: 46 PEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAKE 105
P PK+P + +F F + R KI NP I I +V K + E W + ++EK+ N+ AK
Sbjct: 108 PNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLSDSEKQPYNNKAAKL 167
Query: 106 KEIYAQNVKKY 116
KE Y ++V Y
Sbjct: 168 KEKYEKDVADY 178
Score = 95 (38.5 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 23/74 (31%), Positives = 39/74 (52%)
Query: 46 PEKPKKPLTPYFKFQGQIRNKIMERNPNIKI--IEVTKLVSEEWKKIGEAEKKRLENEYA 103
P+KPK ++ Y F R + ++NP + + E +K SE WK + EK + + E A
Sbjct: 24 PKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFD-EMA 82
Query: 104 KEKEI-YAQNVKKY 116
K ++ Y + +K Y
Sbjct: 83 KADKVRYDREMKDY 96
Score = 42 (19.8 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 149 RETGKPKKPGNSFYLFIKD 167
++ PK+P + F+LF +
Sbjct: 106 KDPNAPKRPPSGFFLFCSE 124
>UNIPROTKB|P25979 [details] [associations]
symbol:ubtf-a "Nucleolar transcription factor 1-A"
species:8355 "Xenopus laevis" [GO:0005730 "nucleolus" evidence=ISS]
[GO:0045943 "positive regulation of transcription from RNA
polymerase I promoter" evidence=ISS] InterPro:IPR009071
Pfam:PF00505 GO:GO:0005730 GO:GO:0003677 GO:GO:0006351
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
InterPro:IPR017877 PROSITE:PS50090 Pfam:PF09011 GO:GO:0045943
KO:K09273 EMBL:X57201 PIR:S15667 PIR:S78455 RefSeq:NP_001095257.1
UniGene:Xl.122 ProteinModelPortal:P25979 SMR:P25979 GeneID:399317
KEGG:xla:399317 CTD:399317 Xenbase:XB-GENE-6254049
HOVERGEN:HBG008708 Uniprot:P25979
Length = 677
Score = 144 (55.7 bits), Expect = 5.9e-09, P = 5.9e-09
Identities = 25/74 (33%), Positives = 51/74 (68%)
Query: 46 PEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAKE 105
PE PKKPLTPYF+F + R K + +P + +++TK++S+++K++ E +K + ++ +E
Sbjct: 109 PEFPKKPLTPYFRFFMEKRAKYAKLHPEMSNLDLTKILSKKYKELPEKKKMKYIQDFQRE 168
Query: 106 KEIYAQNVKKYHDE 119
K + +N+ ++ +E
Sbjct: 169 KLEFERNLARFREE 182
>ZFIN|ZDB-GENE-030131-341 [details] [associations]
symbol:hmgb1a "high-mobility group box 1a"
species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0009409 "response to cold"
evidence=IDA] [GO:0030900 "forebrain development" evidence=IMP]
[GO:0005886 "plasma membrane" evidence=IDA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
ZFIN:ZDB-GENE-030131-341 GO:GO:0005886 GO:GO:0005634 GO:GO:0003677
GO:GO:0009409 GO:GO:0030900 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 Pfam:PF09011 HSSP:P07155
HOVERGEN:HBG009000 EMBL:BC045917 IPI:IPI00489314 UniGene:Dr.150247
UniGene:Dr.158952 ProteinModelPortal:Q7ZVC6 SMR:Q7ZVC6 PRIDE:Q7ZVC6
ArrayExpress:Q7ZVC6 Bgee:Q7ZVC6 Uniprot:Q7ZVC6
Length = 205
Score = 133 (51.9 bits), Expect = 5.9e-09, P = 5.9e-09
Identities = 26/74 (35%), Positives = 40/74 (54%)
Query: 46 PEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAKE 105
P PK+P + +F F + R K+ E P + I +V K + E W KI EK+ E + AK
Sbjct: 91 PNAPKRPPSAFFIFCSEFRPKVKEETPGLSIGDVAKRLGEMWNKISSEEKQPYEKKAAKL 150
Query: 106 KEIYAQNVKKYHDE 119
KE Y +++ Y +
Sbjct: 151 KEKYEKDIAAYRSK 164
Score = 87 (35.7 bits), Expect = 0.00077, Sum P(2) = 0.00077
Identities = 20/73 (27%), Positives = 35/73 (47%)
Query: 46 PEKPKKPLTPYFKFQGQIRNKIMERNPN--IKIIEVTKLVSEEWKKIGEAEKKRLENEYA 103
P KP+ ++ Y F R + +++P + E +K SE WK + EK + E+
Sbjct: 5 PTKPRGKMSSYAYFVQTCREEHKKKHPEATVNFSEFSKKCSERWKTMSAKEKGKFEDMAK 64
Query: 104 KEKEIYAQNVKKY 116
+K Y + +K Y
Sbjct: 65 LDKARYEREMKNY 77
Score = 47 (21.6 bits), Expect = 0.00077, Sum P(2) = 0.00077
Identities = 6/20 (30%), Positives = 14/20 (70%)
Query: 148 FRETGKPKKPGNSFYLFIKD 167
F++ PK+P ++F++F +
Sbjct: 88 FKDPNAPKRPPSAFFIFCSE 107
>UNIPROTKB|P36194 [details] [associations]
symbol:HMGB1 "High mobility group protein B1" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005694 "chromosome" evidence=IEA]
InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
GO:GO:0005634 GO:GO:0005694 GO:GO:0003677 eggNOG:COG5648
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 HOVERGEN:HBG009000 EMBL:D14314 IPI:IPI00591130
PIR:I50254 UniGene:Gga.4513 ProteinModelPortal:P36194 SMR:P36194
STRING:P36194 PRIDE:P36194 Uniprot:P36194
Length = 201
Score = 133 (51.9 bits), Expect = 5.9e-09, P = 5.9e-09
Identities = 27/71 (38%), Positives = 39/71 (54%)
Query: 46 PEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAKE 105
P PK+P + +F F + R KI NP I I +V K + E W + + EK+ N+ AK
Sbjct: 89 PNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLSDGEKQPYNNKAAKL 148
Query: 106 KEIYAQNVKKY 116
KE Y ++V Y
Sbjct: 149 KEKYEKDVADY 159
>UNIPROTKB|J3QKX6 [details] [associations]
symbol:SMARCE1 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily E member 1"
species:9606 "Homo sapiens" [GO:0016514 "SWI/SNF complex"
evidence=IEA] [GO:0071564 "npBAF complex" evidence=IEA] [GO:0071565
"nBAF complex" evidence=IEA] InterPro:IPR009071 Pfam:PF00505
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
HGNC:HGNC:11109 EMBL:AC004585 EMBL:AC073508 Ensembl:ENST00000582955
Uniprot:J3QKX6
Length = 129
Score = 133 (51.9 bits), Expect = 5.9e-09, P = 5.9e-09
Identities = 27/88 (30%), Positives = 48/88 (54%)
Query: 25 PHLNSVTTAGLKQQTSQPLSIPEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVS 84
P NS TA +P P+ P KPL PY ++ ++ +++ NP++K+ E+ K++
Sbjct: 45 PGTNSRVTASSGITIPKP---PKPPDKPLMPYMRYSRKVWDQVKASNPDLKLWEIGKIIG 101
Query: 85 EEWKKIGEAEKKRLENEYAKEKEIYAQN 112
W+ + + EK+ NEY EK Y ++
Sbjct: 102 GMWRDLTDEEKQEYLNEYEAEKIEYNES 129
>MGI|MGI:1914117 [details] [associations]
symbol:Hmg20a "high mobility group 20A" species:10090 "Mus
musculus" [GO:0000122 "negative regulation of transcription from
RNA polymerase II promoter" evidence=IMP] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0016568 "chromatin modification" evidence=IMP] [GO:0045665
"negative regulation of neuron differentiation" evidence=IGI;IDA]
[GO:0046982 "protein heterodimerization activity" evidence=IPI]
InterPro:IPR009071 PROSITE:PS00353 MGI:MGI:1914117 Pfam:PF00505
GO:GO:0005634 GO:GO:0003677 GO:GO:0045665 GO:GO:0006351
GO:GO:0016568 GO:GO:0000122 eggNOG:COG5648 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 CTD:10363
HOVERGEN:HBG059870 OMA:DKERYMR OrthoDB:EOG4H4643 ChiTaRS:HMG20A
EMBL:DQ182735 EMBL:AK004596 EMBL:AK017716 EMBL:AK032790
EMBL:AK039222 EMBL:AK086346 EMBL:AK134213 EMBL:BC013804
EMBL:BC068257 IPI:IPI00120110 IPI:IPI00228054 IPI:IPI00458691
IPI:IPI00473389 RefSeq:NP_080088.1 UniGene:Mm.150856
ProteinModelPortal:Q9DC33 SMR:Q9DC33 IntAct:Q9DC33 STRING:Q9DC33
PhosphoSite:Q9DC33 PaxDb:Q9DC33 PRIDE:Q9DC33
Ensembl:ENSMUST00000034879 GeneID:66867 KEGG:mmu:66867
UCSC:uc009ptb.1 UCSC:uc009ptc.1 UCSC:uc009ptd.1 UCSC:uc009pte.1
GeneTree:ENSGT00700000104521 InParanoid:Q9DC33 NextBio:322867
Bgee:Q9DC33 CleanEx:MM_HMG20A Genevestigator:Q9DC33
GermOnline:ENSMUSG00000032329 Uniprot:Q9DC33
Length = 346
Score = 139 (54.0 bits), Expect = 6.5e-09, P = 6.5e-09
Identities = 24/80 (30%), Positives = 46/80 (57%)
Query: 37 QQTSQPLSIPEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKK 96
++ +PL PK PLT Y +F + R ++ + P + E+T+++ EW K+ EK+
Sbjct: 90 RKRKKPLRDSNAPKSPLTGYVRFMNERREQLRAKRPEVPFPEITRMLGNEWSKLPPEEKQ 149
Query: 97 RLENEYAKEKEIYAQNVKKY 116
R +E ++KE Y + +++Y
Sbjct: 150 RYLDEADRDKERYMKELEQY 169
>UNIPROTKB|Q0VCL5 [details] [associations]
symbol:HMG20A "High-mobility group 20A" species:9913 "Bos
taurus" [GO:0046982 "protein heterodimerization activity"
evidence=IEA] [GO:0045665 "negative regulation of neuron
differentiation" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000122
"negative regulation of transcription from RNA polymerase II
promoter" evidence=IEA] InterPro:IPR009071 Pfam:PF00505
eggNOG:COG5648 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 CTD:10363 HOGENOM:HOG000247029 HOVERGEN:HBG059870
OMA:DKERYMR OrthoDB:EOG4H4643 GeneTree:ENSGT00700000104521
EMBL:DAAA02052476 EMBL:DAAA02052477 EMBL:BC120108 IPI:IPI00714562
RefSeq:NP_001069105.1 UniGene:Bt.103436 SMR:Q0VCL5
Ensembl:ENSBTAT00000027243 GeneID:513719 KEGG:bta:513719
InParanoid:Q0VCL5 NextBio:20871001 Uniprot:Q0VCL5
Length = 347
Score = 139 (54.0 bits), Expect = 6.5e-09, P = 6.5e-09
Identities = 24/80 (30%), Positives = 46/80 (57%)
Query: 37 QQTSQPLSIPEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKK 96
++ +PL PK PLT Y +F + R ++ + P + E+T+++ EW K+ EK+
Sbjct: 91 RKRKKPLRDSNAPKSPLTGYVRFMNERREQLRAKRPEVPFPEITRMLGNEWSKLPPEEKQ 150
Query: 97 RLENEYAKEKEIYAQNVKKY 116
R +E ++KE Y + +++Y
Sbjct: 151 RYLDEADRDKERYMKELEQY 170
>UNIPROTKB|E2RKW6 [details] [associations]
symbol:HMG20A "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0046982 "protein heterodimerization activity"
evidence=IEA] [GO:0045665 "negative regulation of neuron
differentiation" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000122
"negative regulation of transcription from RNA polymerase II
promoter" evidence=IEA] InterPro:IPR009071 Pfam:PF00505
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
CTD:10363 OMA:DKERYMR GeneTree:ENSGT00700000104521
EMBL:AAEX03016351 RefSeq:XP_853367.1 ProteinModelPortal:E2RKW6
Ensembl:ENSCAFT00000028701 GeneID:487661 KEGG:cfa:487661
NextBio:20861223 Uniprot:E2RKW6
Length = 347
Score = 139 (54.0 bits), Expect = 6.5e-09, P = 6.5e-09
Identities = 24/80 (30%), Positives = 46/80 (57%)
Query: 37 QQTSQPLSIPEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKK 96
++ +PL PK PLT Y +F + R ++ + P + E+T+++ EW K+ EK+
Sbjct: 91 RKRKKPLRDSNAPKSPLTGYVRFMNERREQLRAKRPEVPFPEITRMLGNEWSKLPPEEKQ 150
Query: 97 RLENEYAKEKEIYAQNVKKY 116
R +E ++KE Y + +++Y
Sbjct: 151 RYLDEADRDKERYMKELEQY 170
>UNIPROTKB|Q9NP66 [details] [associations]
symbol:HMG20A "High mobility group protein 20A"
species:9606 "Homo sapiens" [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0045665
"negative regulation of neuron differentiation" evidence=IEA]
[GO:0046982 "protein heterodimerization activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0003677 "DNA binding"
evidence=NAS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=NAS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=NAS]
[GO:0006325 "chromatin organization" evidence=NAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR009071 PROSITE:PS00353 Pfam:PF00505
GO:GO:0005634 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
GO:GO:0016568 eggNOG:COG5648 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 EMBL:CH471136 GO:GO:0006325
CTD:10363 HOGENOM:HOG000247029 HOVERGEN:HBG059870 EMBL:AF146222
EMBL:AL355736 EMBL:AL355737 EMBL:AK001601 EMBL:BT006716
EMBL:AK223100 EMBL:AC090984 EMBL:BC021959 IPI:IPI00018924
IPI:IPI00759508 RefSeq:NP_060670.1 UniGene:Hs.69594
ProteinModelPortal:Q9NP66 SMR:Q9NP66 IntAct:Q9NP66
MINT:MINT-1198360 STRING:Q9NP66 PhosphoSite:Q9NP66 DMDM:74734297
PaxDb:Q9NP66 PeptideAtlas:Q9NP66 PRIDE:Q9NP66 DNASU:10363
Ensembl:ENST00000336216 Ensembl:ENST00000381714 GeneID:10363
KEGG:hsa:10363 UCSC:uc002bcq.1 UCSC:uc002bcr.3
GeneCards:GC15P077712 HGNC:HGNC:5001 HPA:HPA008126 MIM:605534
neXtProt:NX_Q9NP66 PharmGKB:PA29331 InParanoid:Q9NP66 OMA:DKERYMR
OrthoDB:EOG4H4643 PhylomeDB:Q9NP66 ChiTaRS:HMG20A GenomeRNAi:10363
NextBio:39285 ArrayExpress:Q9NP66 Bgee:Q9NP66 CleanEx:HS_HMG20A
Genevestigator:Q9NP66 GermOnline:ENSG00000140382 Uniprot:Q9NP66
Length = 347
Score = 139 (54.0 bits), Expect = 6.5e-09, P = 6.5e-09
Identities = 24/80 (30%), Positives = 46/80 (57%)
Query: 37 QQTSQPLSIPEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKK 96
++ +PL PK PLT Y +F + R ++ + P + E+T+++ EW K+ EK+
Sbjct: 91 RKRKKPLRDSNAPKSPLTGYVRFMNERREQLRAKRPEVPFPEITRMLGNEWSKLPPEEKQ 150
Query: 97 RLENEYAKEKEIYAQNVKKY 116
R +E ++KE Y + +++Y
Sbjct: 151 RYLDEADRDKERYMKELEQY 170
>RGD|1564760 [details] [associations]
symbol:Hmg20a "high mobility group 20A" species:10116 "Rattus
norvegicus" [GO:0000122 "negative regulation of transcription from
RNA polymerase II promoter" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO] [GO:0016568 "chromatin modification" evidence=ISO]
[GO:0045665 "negative regulation of neuron differentiation"
evidence=ISO] [GO:0046982 "protein heterodimerization activity"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR009071 Pfam:PF00505 RGD:1564760 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 IPI:IPI00565616
Ensembl:ENSRNOT00000022903 UCSC:RGD:1564760 ArrayExpress:D3Z9E3
Uniprot:D3Z9E3
Length = 376
Score = 139 (54.0 bits), Expect = 7.7e-09, P = 7.7e-09
Identities = 24/80 (30%), Positives = 46/80 (57%)
Query: 37 QQTSQPLSIPEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKK 96
++ +PL PK PLT Y +F + R ++ + P + E+T+++ EW K+ EK+
Sbjct: 91 RKRKKPLRDSNAPKSPLTGYVRFMNERREQLRAKRPEVPFPEITRMLGNEWSKLPPEEKQ 150
Query: 97 RLENEYAKEKEIYAQNVKKY 116
R +E ++KE Y + +++Y
Sbjct: 151 RYLDEADRDKERYMKELEQY 170
>UNIPROTKB|A8MRB2 [details] [associations]
symbol:TFAM "Transcription factor A, mitochondrial"
species:9606 "Homo sapiens" [GO:0005739 "mitochondrion"
evidence=IDA] InterPro:IPR009071 Pfam:PF00505 GO:GO:0005739
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 CTD:7019 HOGENOM:HOG000139423 HOVERGEN:HBG106674
KO:K11830 EMBL:AC023170 UniGene:Hs.594250 GeneID:7019 KEGG:hsa:7019
HGNC:HGNC:11741 ChiTaRS:TFAM IPI:IPI00644515 RefSeq:NP_001257711.1
ProteinModelPortal:A8MRB2 SMR:A8MRB2 STRING:A8MRB2
Ensembl:ENST00000373895 ArrayExpress:A8MRB2 Bgee:A8MRB2
Uniprot:A8MRB2
Length = 214
Score = 132 (51.5 bits), Expect = 8.0e-09, P = 8.0e-09
Identities = 20/77 (25%), Positives = 47/77 (61%)
Query: 49 PKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAKEKEI 108
PKKP++ Y +F + +NP+ K E+ + +++ W+++ +++KK ++ Y E ++
Sbjct: 50 PKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQV 109
Query: 109 YAQNVKKYHDELTPEAI 125
Y + + ++ ++LTP I
Sbjct: 110 YKEEISRFKEQLTPSQI 126
>UNIPROTKB|E1BIU3 [details] [associations]
symbol:LOC532409 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 GeneTree:ENSGT00560000076717 EMBL:DAAA02004182
IPI:IPI00839111 RefSeq:XP_003585778.1 Ensembl:ENSBTAT00000044962
GeneID:532409 KEGG:bta:532409 OMA:FLENTRC ArrayExpress:E1BIU3
Uniprot:E1BIU3
Length = 186
Score = 131 (51.2 bits), Expect = 9.7e-09, P = 9.7e-09
Identities = 27/71 (38%), Positives = 40/71 (56%)
Query: 46 PEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAKE 105
P PK+P + +F F + R KI NP I I +V K + E W + ++EK+ N+ AK
Sbjct: 90 PNAPKRPPSGFFLFCSEFRPKIKSANPGISIGDVAKKLGEMWNNLSDSEKQPYINKAAKL 149
Query: 106 KEIYAQNVKKY 116
KE Y ++V Y
Sbjct: 150 KEKYEKDVADY 160
Score = 95 (38.5 bits), Expect = 9.8e-05, Sum P(2) = 9.8e-05
Identities = 23/74 (31%), Positives = 39/74 (52%)
Query: 46 PEKPKKPLTPYFKFQGQIRNKIMERNPNIKI--IEVTKLVSEEWKKIGEAEKKRLENEYA 103
P+KPK ++ Y F R + ++NP + + E +K SE WK + EK + + E A
Sbjct: 6 PKKPKGKMSAYSFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFD-EIA 64
Query: 104 KEKEI-YAQNVKKY 116
K ++ Y + +K Y
Sbjct: 65 KADKVRYDREMKDY 78
Score = 42 (19.8 bits), Expect = 9.8e-05, Sum P(2) = 9.8e-05
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 149 RETGKPKKPGNSFYLFIKD 167
++ PK+P + F+LF +
Sbjct: 88 KDPNAPKRPPSGFFLFCSE 106
>UNIPROTKB|Q32L31 [details] [associations]
symbol:HMGB3 "High mobility group protein B3" species:9913
"Bos taurus" [GO:0003690 "double-stranded DNA binding"
evidence=IDA] [GO:0008301 "DNA binding, bending" evidence=IDA]
[GO:0006310 "DNA recombination" evidence=IDA] [GO:0005694
"chromosome" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
GO:GO:0005634 GO:GO:0005694 GO:GO:0008301 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0006310
GO:GO:0003690 Pfam:PF09011 HSSP:P48431 HOGENOM:HOG000197861
GeneTree:ENSGT00560000076717 HOVERGEN:HBG009000 OrthoDB:EOG4TTGK2
eggNOG:NOG320947 EMBL:BC109793 IPI:IPI00883385
RefSeq:NP_001069753.2 RefSeq:NP_001106728.1 UniGene:Bt.62966
ProteinModelPortal:Q32L31 SMR:Q32L31 Ensembl:ENSBTAT00000005793
Ensembl:ENSBTAT00000006785 GeneID:613729 KEGG:bta:613729 CTD:3149
InParanoid:Q32L31 KO:K11296 OMA:DNEKQPY NextBio:20898733
ArrayExpress:Q32L31 Uniprot:Q32L31
Length = 200
Score = 131 (51.2 bits), Expect = 9.7e-09, P = 9.7e-09
Identities = 27/71 (38%), Positives = 40/71 (56%)
Query: 46 PEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAKE 105
P PK+P + +F F + R KI NP I I +V K + E W + ++EK+ N+ AK
Sbjct: 90 PNAPKRPPSGFFLFCSEFRPKIKSANPGISIGDVAKKLGEMWNNLSDSEKQPYINKAAKL 149
Query: 106 KEIYAQNVKKY 116
KE Y ++V Y
Sbjct: 150 KEKYEKDVADY 160
Score = 95 (38.5 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 23/74 (31%), Positives = 39/74 (52%)
Query: 46 PEKPKKPLTPYFKFQGQIRNKIMERNPNIKI--IEVTKLVSEEWKKIGEAEKKRLENEYA 103
P+KPK ++ Y F R + ++NP + + E +K SE WK + EK + + E A
Sbjct: 6 PKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFD-EMA 64
Query: 104 KEKEI-YAQNVKKY 116
K ++ Y + +K Y
Sbjct: 65 KADKVRYDREMKDY 78
Score = 42 (19.8 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 149 RETGKPKKPGNSFYLFIKD 167
++ PK+P + F+LF +
Sbjct: 88 KDPNAPKRPPSGFFLFCSE 106
>UNIPROTKB|F1RQ19 [details] [associations]
symbol:LOC100517745 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 GeneTree:ENSGT00560000076717 KO:K11296 OMA:DNEKQPY
EMBL:CU929821 RefSeq:XP_003135516.1 UniGene:Ssc.27311
Ensembl:ENSSSCT00000013934 GeneID:100517745 KEGG:ssc:100517745
Uniprot:F1RQ19
Length = 202
Score = 131 (51.2 bits), Expect = 9.7e-09, P = 9.7e-09
Identities = 27/71 (38%), Positives = 40/71 (56%)
Query: 46 PEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAKE 105
P PK+P + +F F + R KI NP I I +V K + E W + ++EK+ N+ AK
Sbjct: 90 PNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLSDSEKQPYINKAAKL 149
Query: 106 KEIYAQNVKKY 116
KE Y ++V Y
Sbjct: 150 KEKYEKDVADY 160
Score = 95 (38.5 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 23/74 (31%), Positives = 39/74 (52%)
Query: 46 PEKPKKPLTPYFKFQGQIRNKIMERNPNIKI--IEVTKLVSEEWKKIGEAEKKRLENEYA 103
P+KPK ++ Y F R + ++NP + + E +K SE WK + EK + + E A
Sbjct: 6 PKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFD-EMA 64
Query: 104 KEKEI-YAQNVKKY 116
K ++ Y + +K Y
Sbjct: 65 KADKVRYDREMKDY 78
Score = 42 (19.8 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 149 RETGKPKKPGNSFYLFIKD 167
++ PK+P + F+LF +
Sbjct: 88 KDPNAPKRPPSGFFLFCSE 106
>ASPGD|ASPL0000037691 [details] [associations]
symbol:AN2885 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0008301 "DNA binding, bending" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA] [GO:0070898 "RNA
polymerase III transcriptional preinitiation complex assembly"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IEA] InterPro:IPR009071 Pfam:PF00505
GO:GO:0005694 GO:GO:0006355 GO:GO:0043565 GO:GO:0006281
EMBL:BN001306 GO:GO:0006338 eggNOG:COG5648 GO:GO:0008301
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
EMBL:AACD01000051 GO:GO:0031491 HOGENOM:HOG000197861 GO:GO:0051123
GO:GO:0032301 OMA:FFANDNR OrthoDB:EOG4S7P0P GO:GO:0034724
GO:GO:0070898 RefSeq:XP_660489.1 ProteinModelPortal:Q5B995
SMR:Q5B995 STRING:Q5B995 EnsemblFungi:CADANIAT00010204
GeneID:2874036 KEGG:ani:AN2885.2 Uniprot:Q5B995
Length = 106
Score = 131 (51.2 bits), Expect = 9.7e-09, P = 9.7e-09
Identities = 28/94 (29%), Positives = 46/94 (48%)
Query: 24 MPHLNSVT-TAGLKQQTSQPLSIPEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKL 82
MP N T ++ + P PK+ L+ Y F R+K+ E NP I +V K+
Sbjct: 1 MPKANPTRKTKATRETGGRKKKDPNAPKRGLSAYMFFANDNRDKVREENPGISFGQVGKM 60
Query: 83 VSEEWKKIGEAEKKRLENEYAKEKEIYAQNVKKY 116
+ E+WK + + E+K E++ A +K+ Y Y
Sbjct: 61 LGEKWKSLSDKERKPYEDKAAADKKRYEDEKAAY 94
>CGD|CAL0004040 [details] [associations]
symbol:HMO1 species:5476 "Candida albicans" [GO:0000790
"nuclear chromatin" evidence=IPI] [GO:0043565 "sequence-specific
DNA binding" evidence=IDA] [GO:0019318 "hexose metabolic process"
evidence=IPI] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IPI] [GO:0032443 "regulation of ergosterol
biosynthetic process" evidence=IPI] [GO:0007346 "regulation of
mitotic cell cycle" evidence=IPI] [GO:1900461 "positive regulation
of pseudohyphal growth by positive regulation of transcription from
RNA polymerase II promoter" evidence=IGI] [GO:2000220 "regulation
of pseudohyphal growth" evidence=IGI] [GO:0044182 "filamentous
growth of a population of unicellular organisms" evidence=IMP]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0008301 "DNA binding, bending" evidence=IEA]
[GO:0003690 "double-stranded DNA binding" evidence=IEA] [GO:0000400
"four-way junction DNA binding" evidence=IEA] [GO:0060962
"regulation of ribosomal protein gene transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0034401 "regulation of
transcription by chromatin organization" evidence=IEA] [GO:0006356
"regulation of transcription from RNA polymerase I promoter"
evidence=IEA] InterPro:IPR009071 CGD:CAL0004040 Pfam:PF00505
GO:GO:0007346 GO:GO:0043565 eggNOG:COG5648 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:1900461
GO:GO:0044182 GO:GO:0032443 EMBL:AACQ01000165 EMBL:AACQ01000186
GO:GO:0019318 RefSeq:XP_711711.1 RefSeq:XP_712185.1
ProteinModelPortal:Q59PR9 STRING:Q59PR9 GeneID:3646217
GeneID:3646685 KEGG:cal:CaO19.13966 KEGG:cal:CaO19.6645
Uniprot:Q59PR9
Length = 223
Score = 132 (51.5 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 29/80 (36%), Positives = 42/80 (52%)
Query: 46 PEKPKKPLTPYFKFQGQIRNKI-MERN----PNIKIIEVTKLVSEEWKKIGEAEKKRLEN 100
P PKKPLT +F+F +R KI +ER P++ I++ ++ + W I EAEK +
Sbjct: 84 PNAPKKPLTMFFQFSYDLRKKIGIERKKKDLPSLSAIDMNSMIKDRWDSISEAEKAGYKK 143
Query: 101 EYAKEKEIYAQNVKKYHDEL 120
Y IY KKY + L
Sbjct: 144 RYDDAMIIYNIEKKKYEESL 163
>UNIPROTKB|Q59PR9 [details] [associations]
symbol:HMO1 "Potential HMG-like DNA binding protein Hmo1p"
species:237561 "Candida albicans SC5314" [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IPI] [GO:0007346 "regulation
of mitotic cell cycle" evidence=IPI] [GO:0019318 "hexose metabolic
process" evidence=IPI] [GO:0032443 "regulation of ergosterol
biosynthetic process" evidence=IPI] [GO:0043565 "sequence-specific
DNA binding" evidence=IDA] [GO:0044182 "filamentous growth of a
population of unicellular organisms" evidence=IMP] [GO:1900461
"positive regulation of pseudohyphal growth by positive regulation
of transcription from RNA polymerase II promoter" evidence=IGI]
[GO:2000220 "regulation of pseudohyphal growth" evidence=IGI]
[GO:0000790 "nuclear chromatin" evidence=IPI] InterPro:IPR009071
CGD:CAL0004040 Pfam:PF00505 GO:GO:0007346 GO:GO:0043565
eggNOG:COG5648 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:1900461 GO:GO:0044182 GO:GO:0032443
EMBL:AACQ01000165 EMBL:AACQ01000186 GO:GO:0019318
RefSeq:XP_711711.1 RefSeq:XP_712185.1 ProteinModelPortal:Q59PR9
STRING:Q59PR9 GeneID:3646217 GeneID:3646685 KEGG:cal:CaO19.13966
KEGG:cal:CaO19.6645 Uniprot:Q59PR9
Length = 223
Score = 132 (51.5 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 29/80 (36%), Positives = 42/80 (52%)
Query: 46 PEKPKKPLTPYFKFQGQIRNKI-MERN----PNIKIIEVTKLVSEEWKKIGEAEKKRLEN 100
P PKKPLT +F+F +R KI +ER P++ I++ ++ + W I EAEK +
Sbjct: 84 PNAPKKPLTMFFQFSYDLRKKIGIERKKKDLPSLSAIDMNSMIKDRWDSISEAEKAGYKK 143
Query: 101 EYAKEKEIYAQNVKKYHDEL 120
Y IY KKY + L
Sbjct: 144 RYDDAMIIYNIEKKKYEESL 163
>TAIR|locus:2128504 [details] [associations]
symbol:3xHMG-box2 "3xHigh Mobility Group-box2"
species:3702 "Arabidopsis thaliana" [GO:0005634 "nucleus"
evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0003677 "DNA
binding" evidence=IDA] [GO:0000226 "microtubule cytoskeleton
organization" evidence=RCA] [GO:0000911 "cytokinesis by cell plate
formation" evidence=RCA] [GO:0006084 "acetyl-CoA metabolic process"
evidence=RCA] [GO:0008283 "cell proliferation" evidence=RCA]
[GO:0010583 "response to cyclopentenone" evidence=RCA] [GO:0016572
"histone phosphorylation" evidence=RCA] [GO:0042127 "regulation of
cell proliferation" evidence=RCA] InterPro:IPR009071 Pfam:PF00505
GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0003677
GO:GO:0003700 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 EMBL:AL161560 EMBL:AL035394 HSSP:P07155
HOGENOM:HOG000238964 KO:K09273 ProtClustDB:CLSN2686000
EMBL:AY074353 EMBL:AY096398 EMBL:AY125491 IPI:IPI00533790
PIR:T05612 RefSeq:NP_194111.1 UniGene:At.2572 UniGene:At.71059
ProteinModelPortal:Q9SUP7 SMR:Q9SUP7 STRING:Q9SUP7 PaxDb:Q9SUP7
PRIDE:Q9SUP7 EnsemblPlants:AT4G23800.1 GeneID:828480
KEGG:ath:AT4G23800 TAIR:At4g23800 eggNOG:NOG327891
InParanoid:Q9SUP7 OMA:FCNERRA PhylomeDB:Q9SUP7
Genevestigator:Q9SUP7 Uniprot:Q9SUP7
Length = 456
Score = 138 (53.6 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 28/72 (38%), Positives = 39/72 (54%)
Query: 46 PEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAKE 105
P KPKKP + YF F R K+ E P VT L+S +WK++ E EK+ + AK
Sbjct: 376 PNKPKKPASSYFLFSKDERKKLTEERPGTNNATVTALISLKWKELSEEEKQVYNGKAAKL 435
Query: 106 KEIYAQNVKKYH 117
E Y + V+ Y+
Sbjct: 436 MEAYKKEVEAYN 447
Score = 122 (48.0 bits), Expect = 7.6e-07, P = 7.6e-07
Identities = 25/80 (31%), Positives = 42/80 (52%)
Query: 46 PEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAKE 105
P KPK P++ + + + R + E N ++ +EV K+ EEWK + + +K E K
Sbjct: 252 PLKPKHPVSAFLVYANERRAALREENKSV--VEVAKITGEEWKNLSDKKKAPYEKVAKKN 309
Query: 106 KEIYAQNVKKYHDELTPEAI 125
KE Y Q +++Y EA+
Sbjct: 310 KETYLQAMEEYKRTKEEEAL 329
>SGD|S000001515 [details] [associations]
symbol:IXR1 "Protein that binds DNA intrastrand cross-links
formed by cisplatin" species:4932 "Saccharomyces cerevisiae"
[GO:0043565 "sequence-specific DNA binding" evidence=IDA]
[GO:0000790 "nuclear chromatin" evidence=IDA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0071456 "cellular response to hypoxia" evidence=IGI;IMP]
[GO:0006281 "DNA repair" evidence=IGI] [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IMP] [GO:0003684 "damaged DNA binding" evidence=IDA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] InterPro:IPR009071 SGD:S000001515 Pfam:PF00505
GO:GO:0005634 GO:GO:0003684 GO:GO:0043565 GO:GO:0006281
GO:GO:0071456 GO:GO:0006351 EMBL:BK006944 GO:GO:0000122
eggNOG:COG5648 GeneTree:ENSGT00680000100562 OrthoDB:EOG483HF0
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
EMBL:X71622 EMBL:L16900 EMBL:Z28032 PIR:S37849 RefSeq:NP_012893.3
RefSeq:NP_012897.3 ProteinModelPortal:P33417 SMR:P33417
IntAct:P33417 STRING:P33417 PaxDb:P33417 PeptideAtlas:P33417
EnsemblFungi:YKL032C GeneID:853836 GeneID:853840 KEGG:sce:YKL028W
KEGG:sce:YKL032C CYGD:YKL032c KO:K03136 NextBio:975043
Genevestigator:P33417 GermOnline:YKL032C Uniprot:P33417
Length = 597
Score = 125 (49.1 bits), Expect = 2.3e-08, Sum P(2) = 2.3e-08
Identities = 25/75 (33%), Positives = 41/75 (54%)
Query: 49 PKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAKEKEI 108
PK+P + YF F IRN+++++ P K+ E++KL S WK++ + +KK E+ E
Sbjct: 361 PKRPSSAYFLFSMSIRNELLQQFPEAKVPELSKLASARWKELTDDQKKPFYEEFRTNWEK 420
Query: 109 YAQNVKKYHDELTPE 123
Y Y L P+
Sbjct: 421 YRVVRDAYEKTLPPK 435
Score = 119 (46.9 bits), Expect = 2.4e-06, P = 2.4e-06
Identities = 21/60 (35%), Positives = 37/60 (61%)
Query: 49 PKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAKE-KE 107
PK+P P+ +F +IR +++ NP+ +IE+TK++ E W+++ A+K Y K KE
Sbjct: 434 PKRPSGPFIQFTQEIRPTVVKENPDKGLIEITKIIGERWRELDPAKKAEYTETYKKRLKE 493
Score = 35 (17.4 bits), Expect = 2.3e-08, Sum P(2) = 2.3e-08
Identities = 6/20 (30%), Positives = 11/20 (55%)
Query: 148 FRETGKPKKPGNSFYLFIKD 167
+ +T PK+P F F ++
Sbjct: 428 YEKTLPPKRPSGPFIQFTQE 447
>RGD|1588759 [details] [associations]
symbol:Hmgb1-ps3 "high mobility group box 1, pseudogene 3"
species:10116 "Rattus norvegicus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
RGD:1588759 GO:GO:0005634 GO:GO:0003677 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 Pfam:PF09011
OrthoDB:EOG4KWJV1 GeneTree:ENSGT00560000076717 IPI:IPI00366734
Ensembl:ENSRNOT00000046626 Uniprot:D3ZGW6
Length = 212
Score = 127 (49.8 bits), Expect = 3.0e-08, P = 3.0e-08
Identities = 27/91 (29%), Positives = 46/91 (50%)
Query: 36 KQQTSQPLSIPEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEK 95
K +T + P PK+P +F F + R KI +P + I +V K + E W +K
Sbjct: 82 KGETKKKFKDPNAPKRPPLAFFLFCSEYRPKIKGEHPGLSIGDVVKKLGEMWNNTAVDDK 141
Query: 96 KRLENEYAKEKEIYAQNVKKYHDELTPEAIE 126
+ E + AK KE Y +++ Y + P+A++
Sbjct: 142 QPCEKKAAKLKEKYEKDIAAYRAKGKPDAVK 172
>RGD|1564407 [details] [associations]
symbol:Hmgb3 "high mobility group box 3" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;ISO] [GO:0045578 "negative regulation of B
cell differentiation" evidence=ISO] [GO:0045638 "negative
regulation of myeloid cell differentiation" evidence=ISO]
InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
RGD:1564407 GO:GO:0005634 GO:GO:0003677 eggNOG:COG5648
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 HOGENOM:HOG000197861 GeneTree:ENSGT00560000076717
HOVERGEN:HBG009000 OrthoDB:EOG4TTGK2 CTD:3149 KO:K11296 OMA:DNEKQPY
EMBL:BC158739 EMBL:CH474187 IPI:IPI00955625 RefSeq:NP_001166812.1
RefSeq:XP_003751731.1 UniGene:Rn.203482 SMR:B0BN99 STRING:B0BN99
Ensembl:ENSRNOT00000015044 GeneID:100912369 GeneID:305373
KEGG:rno:100912369 KEGG:rno:305373 NextBio:654455
Genevestigator:B0BN99 Uniprot:B0BN99
Length = 200
Score = 126 (49.4 bits), Expect = 3.3e-08, P = 3.3e-08
Identities = 26/71 (36%), Positives = 39/71 (54%)
Query: 46 PEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAKE 105
P PK+P + +F F + R KI NP I I +V K + E W + ++EK+ + AK
Sbjct: 90 PNAPKRPPSGFFLFCSEFRPKIKSANPGISIGDVAKKLGEMWNNLSDSEKQPYMTKAAKL 149
Query: 106 KEIYAQNVKKY 116
KE Y ++V Y
Sbjct: 150 KEKYEKDVADY 160
Score = 97 (39.2 bits), Expect = 7.2e-05, Sum P(2) = 7.2e-05
Identities = 23/74 (31%), Positives = 39/74 (52%)
Query: 46 PEKPKKPLTPYFKFQGQIRNKIMERNPNIKI--IEVTKLVSEEWKKIGEAEKKRLENEYA 103
P+KPK ++ Y F R + ++NP + + E +K SE WK + EK + + E A
Sbjct: 6 PKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSSKEKSKFD-EMA 64
Query: 104 KEKEI-YAQNVKKY 116
K ++ Y + +K Y
Sbjct: 65 KADKVRYDREMKDY 78
Score = 42 (19.8 bits), Expect = 7.2e-05, Sum P(2) = 7.2e-05
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 149 RETGKPKKPGNSFYLFIKD 167
++ PK+P + F+LF +
Sbjct: 88 KDPNAPKRPPSGFFLFCSE 106
>UNIPROTKB|D4A9T3 [details] [associations]
symbol:D4A9T3 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 Pfam:PF09011 OrthoDB:EOG4KWJV1
GeneTree:ENSGT00560000076717 IPI:IPI00564375
Ensembl:ENSRNOT00000044787 Uniprot:D4A9T3
Length = 184
Score = 126 (49.4 bits), Expect = 3.3e-08, P = 3.3e-08
Identities = 27/89 (30%), Positives = 45/89 (50%)
Query: 36 KQQTSQPLSIPEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEK 95
K +T + P PK+P + +F F + R KI +P + I +V K + E W +K
Sbjct: 82 KGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDK 141
Query: 96 KRLENEYAKEKEIYAQNVKKYHDELTPEA 124
+ E + AK KE Y +++ Y + P+A
Sbjct: 142 QPYEKKAAKLKEKYEKDIAAYRAKGKPDA 170
Score = 89 (36.4 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 20/73 (27%), Positives = 37/73 (50%)
Query: 46 PEKPKKPLTPYFKFQGQIRNKIMERNPN--IKIIEVTKLVSEEWKKIGEAEKKRLENEYA 103
P+KP+ ++ Y F R + +++P+ + E +K SE WK + EK + E+
Sbjct: 6 PKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAK 65
Query: 104 KEKEIYAQNVKKY 116
+K Y + +K Y
Sbjct: 66 ADKARYEREMKTY 78
Score = 49 (22.3 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 7/20 (35%), Positives = 14/20 (70%)
Query: 148 FRETGKPKKPGNSFYLFIKD 167
F++ PK+P ++F+LF +
Sbjct: 89 FKDPNAPKRPPSAFFLFCSE 108
>UNIPROTKB|P07156 [details] [associations]
symbol:HMGB1 "High mobility group protein B1" species:10029
"Cricetulus griseus" [GO:0000793 "condensed chromosome"
evidence=ISS] [GO:0006288 "base-excision repair, DNA ligation"
evidence=ISS] [GO:0017055 "negative regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=ISS]
InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
GO:GO:0005634 GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0000793 Pfam:PF09011
GO:GO:0017055 HOVERGEN:HBG009000 GO:GO:0006288 EMBL:Y00365
PIR:A27853 PDB:1HSM PDB:1HSN PDB:1NHM PDB:1NHN PDBsum:1HSM
PDBsum:1HSN PDBsum:1NHM PDBsum:1NHN ProteinModelPortal:P07156
SMR:P07156 PRIDE:P07156 EvolutionaryTrace:P07156 Uniprot:P07156
Length = 180
Score = 126 (49.4 bits), Expect = 3.3e-08, P = 3.3e-08
Identities = 27/89 (30%), Positives = 45/89 (50%)
Query: 36 KQQTSQPLSIPEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEK 95
K +T + P PK+P + +F F + R KI +P + I +V K + E W +K
Sbjct: 47 KGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDK 106
Query: 96 KRLENEYAKEKEIYAQNVKKYHDELTPEA 124
+ E + AK KE Y +++ Y + P+A
Sbjct: 107 QPYEKKAAKLKEKYEKDIAAYRAKGKPDA 135
>TAIR|locus:2136103 [details] [associations]
symbol:3xHMG-box1 "3xHigh Mobility Group-box1"
species:3702 "Arabidopsis thaliana" [GO:0005634 "nucleus"
evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] InterPro:IPR009071
Pfam:PF00505 GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR
EMBL:AL161531 GO:GO:0003677 GO:GO:0003700 eggNOG:COG5648
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
EMBL:AF080120 EMBL:AL049876 HSSP:P07155 EMBL:AY133687 EMBL:AJ630485
EMBL:AY568657 IPI:IPI00533286 PIR:T01926 PIR:T08187
RefSeq:NP_192846.1 UniGene:At.33587 ProteinModelPortal:Q9T012
SMR:Q9T012 EnsemblPlants:AT4G11080.1 GeneID:826709
KEGG:ath:AT4G11080 TAIR:At4g11080 HOGENOM:HOG000238964
InParanoid:Q9T012 KO:K09273 OMA:CKDQWNE PhylomeDB:Q9T012
ProtClustDB:CLSN2686000 Genevestigator:Q9T012 Uniprot:Q9T012
Length = 446
Score = 134 (52.2 bits), Expect = 3.7e-08, P = 3.7e-08
Identities = 27/76 (35%), Positives = 43/76 (56%)
Query: 46 PEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAKE 105
P KPKKP + YF F R ++E +P I VT +S +W ++GE EK+ ++ A+
Sbjct: 369 PNKPKKPTSSYFLFCKDARKSVLEEHPGINNSTVTAHISLKWMELGEEEKQVYNSKAAEL 428
Query: 106 KEIYAQNVKKYHDELT 121
E Y + V++Y+ T
Sbjct: 429 MEAYKKEVEEYNKTKT 444
Score = 128 (50.1 bits), Expect = 1.6e-07, P = 1.6e-07
Identities = 40/154 (25%), Positives = 68/154 (44%)
Query: 37 QQTSQPLSIPEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKK 96
++ ++ + P KPK+P++ Y + + R + + N +IEV K+ EEWK + E +K
Sbjct: 234 KKKAKKIKDPLKPKQPISAYLIYANERRAAL--KGENKSVIEVAKMAGEEWKNLSEEKKA 291
Query: 97 RLENEYAKEKEIYAQNVKKYHDELTPEAI-------EFLRXXXXXXXXXXXXXXXXX-LF 148
+ K KEIY Q ++ Y EA+ EF++ +
Sbjct: 292 PYDQMAKKNKEIYLQEMEGYKRTKEEEAMSQKKEEEEFMKLHKQEALQLLKKKEKTDNII 351
Query: 149 RET---------------GKPKKPGNSFYLFIKD 167
++T KPKKP +S++LF KD
Sbjct: 352 KKTKETAKNKKKNENVDPNKPKKPTSSYFLFCKD 385
Score = 114 (45.2 bits), Expect = 4.3e-05, P = 4.3e-05
Identities = 26/79 (32%), Positives = 41/79 (51%)
Query: 50 KKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAKEKEIY 109
K+P TPY + N++ ++NP E + ++ +WK I EKK E +Y +KE Y
Sbjct: 130 KRPSTPYILWCKDNWNEVKKQNPEADFKETSNILGAKWKGISAEEKKPYEEKYQADKEAY 189
Query: 110 AQNVKKYHDELTPEAIEFL 128
Q + K E EA++ L
Sbjct: 190 LQVITKEKRER--EAMKLL 206
>RGD|1585821 [details] [associations]
symbol:LOC680968 "similar to High mobility group protein 1
(HMG-1) (High mobility group protein B1) (Amphoterin)
(Heparin-binding protein p30)" species:10116 "Rattus norvegicus"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] REFSEQ:XM_001059688 Ncbi:XP_001059688
Length = 213
Score = 126 (49.4 bits), Expect = 4.1e-08, P = 4.1e-08
Identities = 27/89 (30%), Positives = 45/89 (50%)
Query: 36 KQQTSQPLSIPEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEK 95
K +T + P PK+P + +F F + R KI +P + I +V K + E W +K
Sbjct: 82 KGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDK 141
Query: 96 KRLENEYAKEKEIYAQNVKKYHDELTPEA 124
+ E + AK KE Y +++ Y + P+A
Sbjct: 142 QPYEKKAAKLKEKYEKDIAAYRAKGKPDA 170
Score = 89 (36.4 bits), Expect = 0.00029, Sum P(2) = 0.00029
Identities = 20/73 (27%), Positives = 37/73 (50%)
Query: 46 PEKPKKPLTPYFKFQGQIRNKIMERNPN--IKIIEVTKLVSEEWKKIGEAEKKRLENEYA 103
P+KP+ ++ Y F R + +++P+ + E +K SE WK + EK + E+
Sbjct: 6 PKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAK 65
Query: 104 KEKEIYAQNVKKY 116
+K Y + +K Y
Sbjct: 66 ADKARYEREMKTY 78
Score = 49 (22.3 bits), Expect = 0.00029, Sum P(2) = 0.00029
Identities = 7/20 (35%), Positives = 14/20 (70%)
Query: 148 FRETGKPKKPGNSFYLFIKD 167
F++ PK+P ++F+LF +
Sbjct: 89 FKDPNAPKRPPSAFFLFCSE 108
>UNIPROTKB|E7EQU1 [details] [associations]
symbol:HMGB3 "High mobility group protein B3" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 EMBL:AF003626 HGNC:HGNC:5004 IPI:IPI00640781
ProteinModelPortal:E7EQU1 SMR:E7EQU1 PRIDE:E7EQU1
Ensembl:ENST00000455596 ArrayExpress:E7EQU1 Bgee:E7EQU1
Uniprot:E7EQU1
Length = 193
Score = 125 (49.1 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 26/71 (36%), Positives = 39/71 (54%)
Query: 46 PEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAKE 105
P PK+P + +F F + R KI NP I I +V K + E W + ++EK+ + AK
Sbjct: 90 PNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLNDSEKQPYITKAAKL 149
Query: 106 KEIYAQNVKKY 116
KE Y ++V Y
Sbjct: 150 KEKYEKDVADY 160
Score = 95 (38.5 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 23/74 (31%), Positives = 39/74 (52%)
Query: 46 PEKPKKPLTPYFKFQGQIRNKIMERNPNIKI--IEVTKLVSEEWKKIGEAEKKRLENEYA 103
P+KPK ++ Y F R + ++NP + + E +K SE WK + EK + + E A
Sbjct: 6 PKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFD-EMA 64
Query: 104 KEKEI-YAQNVKKY 116
K ++ Y + +K Y
Sbjct: 65 KADKVRYDREMKDY 78
Score = 42 (19.8 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 149 RETGKPKKPGNSFYLFIKD 167
++ PK+P + F+LF +
Sbjct: 88 KDPNAPKRPPSGFFLFCSE 106
>UNIPROTKB|E7ES08 [details] [associations]
symbol:HMGB3 "High mobility group protein B3" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 EMBL:AF003626 HGNC:HGNC:5004 IPI:IPI00643317
ProteinModelPortal:E7ES08 SMR:E7ES08 PRIDE:E7ES08
Ensembl:ENST00000419110 ArrayExpress:E7ES08 Bgee:E7ES08
Uniprot:E7ES08
Length = 188
Score = 125 (49.1 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 26/71 (36%), Positives = 39/71 (54%)
Query: 46 PEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAKE 105
P PK+P + +F F + R KI NP I I +V K + E W + ++EK+ + AK
Sbjct: 90 PNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLNDSEKQPYITKAAKL 149
Query: 106 KEIYAQNVKKY 116
KE Y ++V Y
Sbjct: 150 KEKYEKDVADY 160
Score = 95 (38.5 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 23/74 (31%), Positives = 39/74 (52%)
Query: 46 PEKPKKPLTPYFKFQGQIRNKIMERNPNIKI--IEVTKLVSEEWKKIGEAEKKRLENEYA 103
P+KPK ++ Y F R + ++NP + + E +K SE WK + EK + + E A
Sbjct: 6 PKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFD-EMA 64
Query: 104 KEKEI-YAQNVKKY 116
K ++ Y + +K Y
Sbjct: 65 KADKVRYDREMKDY 78
Score = 42 (19.8 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 149 RETGKPKKPGNSFYLFIKD 167
++ PK+P + F+LF +
Sbjct: 88 KDPNAPKRPPSGFFLFCSE 106
>UNIPROTKB|O15347 [details] [associations]
symbol:HMGB3 "High mobility group protein B3" species:9606
"Homo sapiens" [GO:0005634 "nucleus" evidence=IEA] [GO:0005694
"chromosome" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=ISS] [GO:0003690 "double-stranded DNA binding"
evidence=ISS] [GO:0008301 "DNA binding, bending" evidence=ISS]
[GO:0007275 "multicellular organismal development" evidence=TAS]
InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
GO:GO:0007275 GO:GO:0005634 GO:GO:0005694 GO:GO:0008301
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0006310 GO:GO:0003690 Pfam:PF09011 HOGENOM:HOG000197861
HOVERGEN:HBG009000 OrthoDB:EOG4TTGK2 eggNOG:NOG320947 CTD:3149
KO:K11296 OMA:DNEKQPY EMBL:Y10043 EMBL:AF003626 EMBL:BC070482
IPI:IPI00217477 RefSeq:NP_005333.2 UniGene:Hs.19114 PDB:2EQZ
PDB:2YQI PDBsum:2EQZ PDBsum:2YQI ProteinModelPortal:O15347
SMR:O15347 IntAct:O15347 STRING:O15347 PhosphoSite:O15347
PaxDb:O15347 PeptideAtlas:O15347 PRIDE:O15347 DNASU:3149
Ensembl:ENST00000325307 Ensembl:ENST00000448905 GeneID:3149
KEGG:hsa:3149 UCSC:uc004fep.3 GeneCards:GC0XP150148 HGNC:HGNC:5004
MIM:300193 neXtProt:NX_O15347 PharmGKB:PA35092 InParanoid:O15347
PhylomeDB:O15347 EvolutionaryTrace:O15347 GenomeRNAi:3149
NextBio:12480 ArrayExpress:O15347 Bgee:O15347 CleanEx:HS_HMGB3
Genevestigator:O15347 GermOnline:ENSG00000029993 Uniprot:O15347
Length = 200
Score = 125 (49.1 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 26/71 (36%), Positives = 39/71 (54%)
Query: 46 PEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAKE 105
P PK+P + +F F + R KI NP I I +V K + E W + ++EK+ + AK
Sbjct: 90 PNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLNDSEKQPYITKAAKL 149
Query: 106 KEIYAQNVKKY 116
KE Y ++V Y
Sbjct: 150 KEKYEKDVADY 160
Score = 95 (38.5 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 23/74 (31%), Positives = 39/74 (52%)
Query: 46 PEKPKKPLTPYFKFQGQIRNKIMERNPNIKI--IEVTKLVSEEWKKIGEAEKKRLENEYA 103
P+KPK ++ Y F R + ++NP + + E +K SE WK + EK + + E A
Sbjct: 6 PKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFD-EMA 64
Query: 104 KEKEI-YAQNVKKY 116
K ++ Y + +K Y
Sbjct: 65 KADKVRYDREMKDY 78
Score = 42 (19.8 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 149 RETGKPKKPGNSFYLFIKD 167
++ PK+P + F+LF +
Sbjct: 88 KDPNAPKRPPSGFFLFCSE 106
>UNIPROTKB|H0YKM5 [details] [associations]
symbol:HMG20A "High mobility group protein 20A"
species:9606 "Homo sapiens" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0045665
"negative regulation of neuron differentiation" evidence=IEA]
[GO:0046982 "protein heterodimerization activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] EMBL:AC090984 Ensembl:ENST00000560867 HGNC:HGNC:5001
ChiTaRS:HMG20A Bgee:H0YKM5 GO:GO:0005634 Gene3D:1.10.30.10
InterPro:IPR009071 Pfam:PF00505 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 Uniprot:H0YKM5
Length = 162
Score = 125 (49.1 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 22/71 (30%), Positives = 40/71 (56%)
Query: 37 QQTSQPLSIPEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKK 96
++ +PL PK PLT Y +F + R ++ + P + E+T+++ EW K+ EK+
Sbjct: 91 RKRKKPLRDSNAPKSPLTGYVRFMNERREQLRAKRPEVPFPEITRMLGNEWSKLPPEEKQ 150
Query: 97 RLENEYAKEKE 107
R +E ++KE
Sbjct: 151 RYLDEADRDKE 161
>RGD|1586285 [details] [associations]
symbol:LOC691220 "hypothetical protein LOC691220" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 RGD:1560584
RGD:1586285 RGD:1588313 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 OrthoDB:EOG4KWJV1 KO:K10802
GeneTree:ENSGT00560000076717 UniGene:Rn.4121 EMBL:CH474054
IPI:IPI00557035 RefSeq:NP_001102843.1 UniGene:Rn.151172
Ensembl:ENSRNOT00000047553 GeneID:679571 KEGG:rno:679571 CTD:434174
NextBio:716771 Uniprot:D3ZCR3
Length = 214
Score = 126 (49.4 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 27/89 (30%), Positives = 45/89 (50%)
Query: 36 KQQTSQPLSIPEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEK 95
K +T + P PK+P + +F F + R KI +P + I +V K + E W +K
Sbjct: 82 KGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDK 141
Query: 96 KRLENEYAKEKEIYAQNVKKYHDELTPEA 124
+ E + AK KE Y +++ Y + P+A
Sbjct: 142 QPYEKKAAKLKEKYEKDIPAYRAKGKPDA 170
Score = 89 (36.4 bits), Expect = 0.00030, Sum P(2) = 0.00030
Identities = 20/73 (27%), Positives = 37/73 (50%)
Query: 46 PEKPKKPLTPYFKFQGQIRNKIMERNPN--IKIIEVTKLVSEEWKKIGEAEKKRLENEYA 103
P+KP+ ++ Y F R + +++P+ + E +K SE WK + EK + E+
Sbjct: 6 PKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAK 65
Query: 104 KEKEIYAQNVKKY 116
+K Y + +K Y
Sbjct: 66 ADKARYEREMKTY 78
Score = 49 (22.3 bits), Expect = 0.00030, Sum P(2) = 0.00030
Identities = 7/20 (35%), Positives = 14/20 (70%)
Query: 148 FRETGKPKKPGNSFYLFIKD 167
F++ PK+P ++F+LF +
Sbjct: 89 FKDPNAPKRPPSAFFLFCSE 108
>RGD|1588313 [details] [associations]
symbol:LOC679451 "similar to High mobility group protein 1
(HMG-1) (High mobility group protein B1) (Amphoterin)
(Heparin-binding protein p30)" species:10116 "Rattus norvegicus"
[GO:0003674 "molecular_function" evidence=ND] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 RGD:1560584
RGD:1586285 RGD:1588313 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 OrthoDB:EOG4KWJV1 KO:K10802
GeneTree:ENSGT00560000076717 UniGene:Rn.4121 EMBL:CH474054
IPI:IPI00557035 RefSeq:NP_001102843.1 UniGene:Rn.151172
Ensembl:ENSRNOT00000047553 GeneID:679571 KEGG:rno:679571 CTD:434174
NextBio:716771 Uniprot:D3ZCR3
Length = 214
Score = 126 (49.4 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 27/89 (30%), Positives = 45/89 (50%)
Query: 36 KQQTSQPLSIPEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEK 95
K +T + P PK+P + +F F + R KI +P + I +V K + E W +K
Sbjct: 82 KGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDK 141
Query: 96 KRLENEYAKEKEIYAQNVKKYHDELTPEA 124
+ E + AK KE Y +++ Y + P+A
Sbjct: 142 QPYEKKAAKLKEKYEKDIPAYRAKGKPDA 170
Score = 89 (36.4 bits), Expect = 0.00030, Sum P(2) = 0.00030
Identities = 20/73 (27%), Positives = 37/73 (50%)
Query: 46 PEKPKKPLTPYFKFQGQIRNKIMERNPN--IKIIEVTKLVSEEWKKIGEAEKKRLENEYA 103
P+KP+ ++ Y F R + +++P+ + E +K SE WK + EK + E+
Sbjct: 6 PKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAK 65
Query: 104 KEKEIYAQNVKKY 116
+K Y + +K Y
Sbjct: 66 ADKARYEREMKTY 78
Score = 49 (22.3 bits), Expect = 0.00030, Sum P(2) = 0.00030
Identities = 7/20 (35%), Positives = 14/20 (70%)
Query: 148 FRETGKPKKPGNSFYLFIKD 167
F++ PK+P ++F+LF +
Sbjct: 89 FKDPNAPKRPPSAFFLFCSE 108
>UNIPROTKB|P10103 [details] [associations]
symbol:HMGB1 "High mobility group protein B1" species:9913
"Bos taurus" [GO:0050918 "positive chemotaxis" evidence=IDA]
[GO:0017055 "negative regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=ISS]
[GO:0006288 "base-excision repair, DNA ligation" evidence=ISS]
[GO:0000793 "condensed chromosome" evidence=ISS] [GO:0033151 "V(D)J
recombination" evidence=IDA] [GO:0003684 "damaged DNA binding"
evidence=IDA] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=ISS] [GO:0006338 "chromatin
remodeling" evidence=NAS] [GO:0042393 "histone binding"
evidence=IDA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0006265 "DNA topological change" evidence=IDA]
[GO:0003690 "double-stranded DNA binding" evidence=IDA] [GO:0008301
"DNA binding, bending" evidence=IDA] [GO:0001773 "myeloid dendritic
cell activation" evidence=IDA] [GO:0042056 "chemoattractant
activity" evidence=IDA] [GO:0002407 "dendritic cell chemotaxis"
evidence=IDA] [GO:0006310 "DNA recombination" evidence=IDA]
[GO:0070491 "repressing transcription factor binding" evidence=IEA]
[GO:0043388 "positive regulation of DNA binding" evidence=IEA]
[GO:0043280 "positive regulation of cysteine-type endopeptidase
activity involved in apoptotic process" evidence=IEA] [GO:0043065
"positive regulation of apoptotic process" evidence=IEA]
[GO:0017053 "transcriptional repressor complex" evidence=IEA]
[GO:0009986 "cell surface" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0002437 "inflammatory response to antigenic
stimulus" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0017053 GO:GO:0009986
GO:GO:0005730 GO:GO:0002437 GO:GO:0003684 GO:GO:0045944
GO:GO:0003700 GO:GO:0006338 eggNOG:COG5648 GO:GO:0008301
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0043065 GO:GO:0003690 GO:GO:0003697 GO:GO:0043280
GO:GO:0042393 GO:GO:0000793 GO:GO:0042056 GO:GO:0043388
GO:GO:0002407 GO:GO:0001773 Pfam:PF09011 GO:GO:0033151
GO:GO:0006265 OrthoDB:EOG4KWJV1 HOGENOM:HOG000197861 OMA:GEDAMRK
KO:K10802 GO:GO:0017055 EMBL:X12796 EMBL:BT030587 EMBL:BC102929
EMBL:M26110 IPI:IPI00710114 PIR:S01947 RefSeq:NP_788785.1
UniGene:Bt.49650 ProteinModelPortal:P10103 SMR:P10103 STRING:P10103
PRIDE:P10103 Ensembl:ENSBTAT00000024094 GeneID:282691
KEGG:bta:282691 CTD:3146 GeneTree:ENSGT00560000076717
HOVERGEN:HBG009000 InParanoid:P10103 NextBio:20806359 GO:GO:0006288
Uniprot:P10103
Length = 215
Score = 126 (49.4 bits), Expect = 4.3e-08, P = 4.3e-08
Identities = 27/89 (30%), Positives = 45/89 (50%)
Query: 36 KQQTSQPLSIPEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEK 95
K +T + P PK+P + +F F + R KI +P + I +V K + E W +K
Sbjct: 82 KGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDK 141
Query: 96 KRLENEYAKEKEIYAQNVKKYHDELTPEA 124
+ E + AK KE Y +++ Y + P+A
Sbjct: 142 QPYEKKAAKLKEKYEKDIAAYRAKGKPDA 170
Score = 89 (36.4 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 20/73 (27%), Positives = 37/73 (50%)
Query: 46 PEKPKKPLTPYFKFQGQIRNKIMERNPN--IKIIEVTKLVSEEWKKIGEAEKKRLENEYA 103
P+KP+ ++ Y F R + +++P+ + E +K SE WK + EK + E+
Sbjct: 6 PKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAK 65
Query: 104 KEKEIYAQNVKKY 116
+K Y + +K Y
Sbjct: 66 ADKARYEREMKTY 78
Score = 49 (22.3 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 7/20 (35%), Positives = 14/20 (70%)
Query: 148 FRETGKPKKPGNSFYLFIKD 167
F++ PK+P ++F+LF +
Sbjct: 89 FKDPNAPKRPPSAFFLFCSE 108
>UNIPROTKB|Q6YKA4 [details] [associations]
symbol:HMGB1 "High mobility group protein B1" species:9615
"Canis lupus familiaris" [GO:0070491 "repressing transcription
factor binding" evidence=IEA] [GO:0043388 "positive regulation of
DNA binding" evidence=IEA] [GO:0043280 "positive regulation of
cysteine-type endopeptidase activity involved in apoptotic process"
evidence=IEA] [GO:0043065 "positive regulation of apoptotic
process" evidence=IEA] [GO:0033151 "V(D)J recombination"
evidence=IEA] [GO:0017055 "negative regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=IEA]
[GO:0017053 "transcriptional repressor complex" evidence=IEA]
[GO:0009986 "cell surface" evidence=IEA] [GO:0006288 "base-excision
repair, DNA ligation" evidence=IEA] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=IEA]
[GO:0002437 "inflammatory response to antigenic stimulus"
evidence=IEA] [GO:0000793 "condensed chromosome" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0017053
GO:GO:0009986 GO:GO:0005730 GO:GO:0002437 GO:GO:0003677
GO:GO:0045944 GO:GO:0003700 eggNOG:COG5648 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0043065
GO:GO:0043280 GO:GO:0000793 GO:GO:0043388 Pfam:PF09011
GO:GO:0033151 OrthoDB:EOG4KWJV1 HOGENOM:HOG000197861 OMA:GEDAMRK
KO:K10802 GO:GO:0017055 CTD:3146 GeneTree:ENSGT00560000076717
HOVERGEN:HBG009000 GO:GO:0006288 EMBL:AY135519 EMBL:AY135521
RefSeq:NP_001002937.1 UniGene:Cfa.416 ProteinModelPortal:Q6YKA4
SMR:Q6YKA4 STRING:Q6YKA4 PRIDE:Q6YKA4 Ensembl:ENSCAFT00000010639
GeneID:403170 KEGG:cfa:403170 InParanoid:Q6YKA4 NextBio:20816914
Uniprot:Q6YKA4
Length = 215
Score = 126 (49.4 bits), Expect = 4.3e-08, P = 4.3e-08
Identities = 27/89 (30%), Positives = 45/89 (50%)
Query: 36 KQQTSQPLSIPEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEK 95
K +T + P PK+P + +F F + R KI +P + I +V K + E W +K
Sbjct: 82 KGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDK 141
Query: 96 KRLENEYAKEKEIYAQNVKKYHDELTPEA 124
+ E + AK KE Y +++ Y + P+A
Sbjct: 142 QPYEKKAAKLKEKYEKDIAAYRAKGKPDA 170
Score = 89 (36.4 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 20/73 (27%), Positives = 37/73 (50%)
Query: 46 PEKPKKPLTPYFKFQGQIRNKIMERNPN--IKIIEVTKLVSEEWKKIGEAEKKRLENEYA 103
P+KP+ ++ Y F R + +++P+ + E +K SE WK + EK + E+
Sbjct: 6 PKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAK 65
Query: 104 KEKEIYAQNVKKY 116
+K Y + +K Y
Sbjct: 66 ADKARYEREMKTY 78
Score = 49 (22.3 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 7/20 (35%), Positives = 14/20 (70%)
Query: 148 FRETGKPKKPGNSFYLFIKD 167
F++ PK+P ++F+LF +
Sbjct: 89 FKDPNAPKRPPSAFFLFCSE 108
>UNIPROTKB|P09429 [details] [associations]
symbol:HMGB1 "High mobility group protein B1" species:9606
"Homo sapiens" [GO:0001654 "eye development" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0010858
"calcium-dependent protein kinase regulator activity" evidence=IEA]
[GO:0030295 "protein kinase activator activity" evidence=IEA]
[GO:0030324 "lung development" evidence=IEA] [GO:0043005 "neuron
projection" evidence=IEA] [GO:0045639 "positive regulation of
myeloid cell differentiation" evidence=IEA] [GO:0045819 "positive
regulation of glycogen catabolic process" evidence=IEA] [GO:0051384
"response to glucocorticoid stimulus" evidence=IEA] [GO:2000426
"negative regulation of apoptotic cell clearance" evidence=IEA]
[GO:0000793 "condensed chromosome" evidence=IDA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006288 "base-excision repair, DNA ligation" evidence=IDA]
[GO:0017055 "negative regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=IDA]
[GO:0031175 "neuron projection development" evidence=ISS]
[GO:0050786 "RAGE receptor binding" evidence=ISS] [GO:0043388
"positive regulation of DNA binding" evidence=IDA] [GO:0006310 "DNA
recombination" evidence=ISS] [GO:0043280 "positive regulation of
cysteine-type endopeptidase activity involved in apoptotic process"
evidence=IDA] [GO:0043065 "positive regulation of apoptotic
process" evidence=IDA] [GO:0005125 "cytokine activity"
evidence=ISS] [GO:0001773 "myeloid dendritic cell activation"
evidence=ISS] [GO:0002407 "dendritic cell chemotaxis" evidence=ISS]
[GO:0042056 "chemoattractant activity" evidence=ISS] [GO:0005634
"nucleus" evidence=IDA] [GO:0051103 "DNA ligation involved in DNA
repair" evidence=ISS] [GO:0009986 "cell surface" evidence=IDA]
[GO:0002437 "inflammatory response to antigenic stimulus"
evidence=IEP] [GO:0005615 "extracellular space" evidence=IDA]
[GO:0006265 "DNA topological change" evidence=ISS] [GO:0003690
"double-stranded DNA binding" evidence=ISS] [GO:0003697
"single-stranded DNA binding" evidence=ISS] [GO:0008301 "DNA
binding, bending" evidence=ISS;IMP] [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IMP] [GO:0017053 "transcriptional repressor complex"
evidence=IDA] [GO:0033151 "V(D)J recombination" evidence=IDA]
[GO:0003684 "damaged DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IDA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IDA] [GO:0008134
"transcription factor binding" evidence=IPI] [GO:0070491
"repressing transcription factor binding" evidence=IPI] [GO:0005576
"extracellular region" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006309 "apoptotic DNA fragmentation"
evidence=TAS] [GO:0006915 "apoptotic process" evidence=TAS]
[GO:0006921 "cellular component disassembly involved in execution
phase of apoptosis" evidence=TAS] [GO:0045087 "innate immune
response" evidence=TAS] [GO:0050918 "positive chemotaxis"
evidence=ISS] Reactome:REACT_578 InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005737
Reactome:REACT_6900 GO:GO:0005615 GO:GO:0005654 GO:GO:0009986
GO:GO:0002437 GO:GO:0003684 GO:GO:0030324 EMBL:CH471075
GO:GO:0045944 GO:GO:0051384 GO:GO:0043005 GO:GO:0045087
GO:GO:0003700 GO:GO:0045860 GO:GO:0030295 eggNOG:COG5648
GO:GO:0008301 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0043065 GO:GO:0003690 GO:GO:0003697
GO:GO:0043280 GO:GO:0045819 GO:GO:0005125 GO:GO:0006309
GO:GO:0000793 Pathway_Interaction_DB:amb2_neutrophils_pathway
GO:GO:0042056 GO:GO:0031175 GO:GO:0001654 GO:GO:0043388
GO:GO:0002407 GO:GO:0001773 Pfam:PF09011 GO:GO:0033151
GO:GO:0006265 GO:GO:0045639 OrthoDB:EOG4KWJV1 HOGENOM:HOG000197861
OMA:GEDAMRK KO:K10802 GO:GO:0017055 CTD:3146 HOVERGEN:HBG009000
GO:GO:0006288 EMBL:X12597 EMBL:U51677 EMBL:D63874 EMBL:EF157968
EMBL:AY377859 EMBL:AK291494 EMBL:AK122825 EMBL:CR749614
EMBL:CR456863 EMBL:BT006940 EMBL:BT020159 EMBL:EU012027
EMBL:AL353648 EMBL:BC003378 EMBL:BC030981 EMBL:BC066889
EMBL:BC067732 EMBL:BC141844 IPI:IPI00419258 PIR:S02826
RefSeq:NP_002119.1 UniGene:Hs.434102 UniGene:Hs.593339
UniGene:Hs.596078 UniGene:Hs.741195 PDB:2LY4 PDB:2YRQ PDBsum:2LY4
PDBsum:2YRQ ProteinModelPortal:P09429 SMR:P09429 DIP:DIP-24195N
IntAct:P09429 MINT:MINT-153055 STRING:P09429 PhosphoSite:P09429
DMDM:123369 DOSAC-COBS-2DPAGE:P09429 PaxDb:P09429
PeptideAtlas:P09429 PRIDE:P09429 DNASU:3146 Ensembl:ENST00000339872
Ensembl:ENST00000341423 Ensembl:ENST00000399494
Ensembl:ENST00000405805 GeneID:3146 KEGG:hsa:3146 UCSC:uc001usx.3
GeneCards:GC13M031032 H-InvDB:HIX0030745 HGNC:HGNC:4983
HPA:CAB005873 HPA:HPA003506 MIM:163905 neXtProt:NX_P09429
PharmGKB:PA188 InParanoid:P09429 PhylomeDB:P09429 ChiTaRS:HMGB1
EvolutionaryTrace:P09429 GenomeRNAi:3146 NextBio:12470
ArrayExpress:P09429 Bgee:P09429 CleanEx:HS_HMGB1
Genevestigator:P09429 GermOnline:ENSG00000189403 GO:GO:0010858
GO:GO:0050786 GO:GO:2000426 Uniprot:P09429
Length = 215
Score = 126 (49.4 bits), Expect = 4.3e-08, P = 4.3e-08
Identities = 27/89 (30%), Positives = 45/89 (50%)
Query: 36 KQQTSQPLSIPEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEK 95
K +T + P PK+P + +F F + R KI +P + I +V K + E W +K
Sbjct: 82 KGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDK 141
Query: 96 KRLENEYAKEKEIYAQNVKKYHDELTPEA 124
+ E + AK KE Y +++ Y + P+A
Sbjct: 142 QPYEKKAAKLKEKYEKDIAAYRAKGKPDA 170
Score = 89 (36.4 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 20/73 (27%), Positives = 37/73 (50%)
Query: 46 PEKPKKPLTPYFKFQGQIRNKIMERNPN--IKIIEVTKLVSEEWKKIGEAEKKRLENEYA 103
P+KP+ ++ Y F R + +++P+ + E +K SE WK + EK + E+
Sbjct: 6 PKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAK 65
Query: 104 KEKEIYAQNVKKY 116
+K Y + +K Y
Sbjct: 66 ADKARYEREMKTY 78
Score = 49 (22.3 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 7/20 (35%), Positives = 14/20 (70%)
Query: 148 FRETGKPKKPGNSFYLFIKD 167
F++ PK+P ++F+LF +
Sbjct: 89 FKDPNAPKRPPSAFFLFCSE 108
>UNIPROTKB|F2Z594 [details] [associations]
symbol:HMGB1 "High mobility group protein B1" species:9823
"Sus scrofa" [GO:2000426 "negative regulation of apoptotic cell
clearance" evidence=IEA] [GO:0070491 "repressing transcription
factor binding" evidence=IEA] [GO:0051384 "response to
glucocorticoid stimulus" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0045819 "positive regulation of glycogen
catabolic process" evidence=IEA] [GO:0045639 "positive regulation
of myeloid cell differentiation" evidence=IEA] [GO:0043388
"positive regulation of DNA binding" evidence=IEA] [GO:0043280
"positive regulation of cysteine-type endopeptidase activity
involved in apoptotic process" evidence=IEA] [GO:0043065 "positive
regulation of apoptotic process" evidence=IEA] [GO:0043005 "neuron
projection" evidence=IEA] [GO:0033151 "V(D)J recombination"
evidence=IEA] [GO:0030324 "lung development" evidence=IEA]
[GO:0030295 "protein kinase activator activity" evidence=IEA]
[GO:0017055 "negative regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=IEA]
[GO:0017053 "transcriptional repressor complex" evidence=IEA]
[GO:0010858 "calcium-dependent protein kinase regulator activity"
evidence=IEA] [GO:0009986 "cell surface" evidence=IEA] [GO:0006288
"base-excision repair, DNA ligation" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005615 "extracellular space"
evidence=IEA] [GO:0005125 "cytokine activity" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0002437 "inflammatory response to
antigenic stimulus" evidence=IEA] [GO:0001654 "eye development"
evidence=IEA] [GO:0000793 "condensed chromosome" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005737
GO:GO:0017053 GO:GO:0005615 GO:GO:0009986 GO:GO:0005730
GO:GO:0002437 GO:GO:0003677 GO:GO:0030324 GO:GO:0045944
GO:GO:0051384 GO:GO:0043005 GO:GO:0003700 GO:GO:0045860
GO:GO:0030295 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0043065 GO:GO:0043280 GO:GO:0045819
GO:GO:0000793 GO:GO:0001654 GO:GO:0043388 Pfam:PF09011
GO:GO:0033151 GO:GO:0045639 OMA:GEDAMRK GO:GO:0017055
GeneTree:ENSGT00560000076717 GO:GO:0006288 GO:GO:0010858
GO:GO:2000426 EMBL:CU062617 ProteinModelPortal:F2Z594 SMR:F2Z594
PRIDE:F2Z594 Ensembl:ENSSSCT00000010221 Uniprot:F2Z594
Length = 215
Score = 126 (49.4 bits), Expect = 4.3e-08, P = 4.3e-08
Identities = 27/89 (30%), Positives = 45/89 (50%)
Query: 36 KQQTSQPLSIPEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEK 95
K +T + P PK+P + +F F + R KI +P + I +V K + E W +K
Sbjct: 82 KGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDK 141
Query: 96 KRLENEYAKEKEIYAQNVKKYHDELTPEA 124
+ E + AK KE Y +++ Y + P+A
Sbjct: 142 QPYEKKAAKLKEKYEKDIAAYRAKGKPDA 170
Score = 89 (36.4 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 20/73 (27%), Positives = 37/73 (50%)
Query: 46 PEKPKKPLTPYFKFQGQIRNKIMERNPN--IKIIEVTKLVSEEWKKIGEAEKKRLENEYA 103
P+KP+ ++ Y F R + +++P+ + E +K SE WK + EK + E+
Sbjct: 6 PKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAK 65
Query: 104 KEKEIYAQNVKKY 116
+K Y + +K Y
Sbjct: 66 ADKARYEREMKTY 78
Score = 49 (22.3 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 7/20 (35%), Positives = 14/20 (70%)
Query: 148 FRETGKPKKPGNSFYLFIKD 167
F++ PK+P ++F+LF +
Sbjct: 89 FKDPNAPKRPPSAFFLFCSE 108
>RGD|1591683 [details] [associations]
symbol:LOC681718 "similar to High mobility group protein 1
(HMG-1) (High mobility group protein B1) (Amphoterin)
(Heparin-binding protein p30)" species:10116 "Rattus norvegicus"
[GO:0003674 "molecular_function" evidence=ND] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 RGD:1591683
GO:GO:0005634 GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 Pfam:PF09011
GeneTree:ENSGT00560000076717 IPI:IPI00767302
Ensembl:ENSRNOT00000045504 OMA:NNTASED ArrayExpress:F1MA29
Uniprot:F1MA29
Length = 215
Score = 126 (49.4 bits), Expect = 4.3e-08, P = 4.3e-08
Identities = 27/89 (30%), Positives = 45/89 (50%)
Query: 36 KQQTSQPLSIPEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEK 95
K +T + P PK+P + +F F + R KI +P + I +V K + E W +K
Sbjct: 82 KGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDK 141
Query: 96 KRLENEYAKEKEIYAQNVKKYHDELTPEA 124
+ E + AK KE Y +++ Y + P+A
Sbjct: 142 QPYEKKAAKLKEKYEKDIAAYRAKGKPDA 170
Score = 89 (36.4 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 20/73 (27%), Positives = 37/73 (50%)
Query: 46 PEKPKKPLTPYFKFQGQIRNKIMERNPN--IKIIEVTKLVSEEWKKIGEAEKKRLENEYA 103
P+KP+ ++ Y F R + +++P+ + E +K SE WK + EK + E+
Sbjct: 6 PKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAK 65
Query: 104 KEKEIYAQNVKKY 116
+K Y + +K Y
Sbjct: 66 ADKARYEREMKTY 78
Score = 49 (22.3 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 7/20 (35%), Positives = 14/20 (70%)
Query: 148 FRETGKPKKPGNSFYLFIKD 167
F++ PK+P ++F+LF +
Sbjct: 89 FKDPNAPKRPPSAFFLFCSE 108
>RGD|2802 [details] [associations]
symbol:Hmgb1 "high mobility group box 1" species:10116 "Rattus
norvegicus" [GO:0000122 "negative regulation of transcription from
RNA polymerase II promoter" evidence=ISO] [GO:0000400 "four-way
junction DNA binding" evidence=IDA] [GO:0000401 "open form four-way
junction DNA binding" evidence=IDA] [GO:0000402 "crossed form
four-way junction DNA binding" evidence=IDA] [GO:0000793 "condensed
chromosome" evidence=ISO] [GO:0000902 "cell morphogenesis"
evidence=IMP] [GO:0001654 "eye development" evidence=ISO] [GO:0001934
"positive regulation of protein phosphorylation" evidence=ISO]
[GO:0002053 "positive regulation of mesenchymal cell proliferation"
evidence=IDA] [GO:0002437 "inflammatory response to antigenic
stimulus" evidence=ISO] [GO:0003681 "bent DNA binding" evidence=IDA]
[GO:0003690 "double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISO] [GO:0005125 "cytokine activity" evidence=ISO;IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005615
"extracellular space" evidence=ISO;IDA] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005694 "chromosome" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISO;IDA] [GO:0006288 "base-excision repair, DNA
ligation" evidence=ISO] [GO:0006357 "regulation of transcription from
RNA polymerase II promoter" evidence=ISO] [GO:0006935 "chemotaxis"
evidence=IDA] [GO:0007399 "nervous system development" evidence=IMP]
[GO:0007623 "circadian rhythm" evidence=IEP] [GO:0008097 "5S rRNA
binding" evidence=IDA] [GO:0008134 "transcription factor binding"
evidence=ISO;IDA] [GO:0008156 "negative regulation of DNA
replication" evidence=IDA] [GO:0008201 "heparin binding"
evidence=IDA;TAS] [GO:0008284 "positive regulation of cell
proliferation" evidence=IDA] [GO:0008301 "DNA binding, bending"
evidence=ISO;IDA] [GO:0009408 "response to heat" evidence=IEP]
[GO:0009749 "response to glucose stimulus" evidence=IEP] [GO:0009986
"cell surface" evidence=ISO] [GO:0010858 "calcium-dependent protein
kinase regulator activity" evidence=ISO] [GO:0010942 "positive
regulation of cell death" evidence=IMP] [GO:0010976 "positive
regulation of neuron projection development" evidence=IMP]
[GO:0014911 "positive regulation of smooth muscle cell migration"
evidence=IMP] [GO:0017055 "negative regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=ISO]
[GO:0030295 "protein kinase activator activity" evidence=ISO]
[GO:0030324 "lung development" evidence=ISO] [GO:0030335 "positive
regulation of cell migration" evidence=IDA] [GO:0031175 "neuron
projection development" evidence=IGI] [GO:0031532 "actin cytoskeleton
reorganization" evidence=IMP] [GO:0032392 "DNA geometric change"
evidence=IDA] [GO:0032496 "response to lipopolysaccharide"
evidence=IEP] [GO:0032868 "response to insulin stimulus"
evidence=IEP] [GO:0033034 "positive regulation of myeloid cell
apoptotic process" evidence=IDA] [GO:0033151 "V(D)J recombination"
evidence=ISO] [GO:0034341 "response to interferon-gamma"
evidence=IMP] [GO:0042277 "peptide binding" evidence=IDA] [GO:0042493
"response to drug" evidence=IEP] [GO:0043005 "neuron projection"
evidence=ISO] [GO:0043065 "positive regulation of apoptotic process"
evidence=ISO;IMP] [GO:0043280 "positive regulation of cysteine-type
endopeptidase activity involved in apoptotic process" evidence=ISO]
[GO:0043388 "positive regulation of DNA binding" evidence=ISO]
[GO:0045639 "positive regulation of myeloid cell differentiation"
evidence=ISO] [GO:0045663 "positive regulation of myoblast
differentiation" evidence=IMP] [GO:0045819 "positive regulation of
glycogen catabolic process" evidence=ISO] [GO:0045931 "positive
regulation of mitotic cell cycle" evidence=IDA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0046983 "protein dimerization activity"
evidence=IDA] [GO:0050727 "regulation of inflammatory response"
evidence=IDA] [GO:0050786 "RAGE receptor binding" evidence=IMP;IPI]
[GO:0050831 "male-specific defense response to bacterium"
evidence=IDA] [GO:0050930 "induction of positive chemotaxis"
evidence=IDA] [GO:0051384 "response to glucocorticoid stimulus"
evidence=ISO] [GO:0051450 "myoblast proliferation" evidence=IMP]
[GO:0051861 "glycolipid binding" evidence=IDA] [GO:0070491
"repressing transcription factor binding" evidence=ISO] [GO:0071347
"cellular response to interleukin-1" evidence=IEP] [GO:0017053
"transcriptional repressor complex" evidence=ISO] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 RGD:2802
GO:GO:0005634 GO:GO:0005737 GO:GO:0005694 GO:GO:0005615 GO:GO:0010976
GO:GO:0042493 GO:GO:0045931 GO:GO:0007623 GO:GO:0009749 GO:GO:0032496
GO:GO:0008201 GO:GO:0009408 GO:GO:0006935 GO:GO:0032868 GO:GO:0046983
eggNOG:COG5648 GO:GO:0008301 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0031532 GO:GO:0050727
GO:GO:0042277 GO:GO:0003690 GO:GO:0003697 GO:GO:0000902 GO:GO:0033034
GO:GO:0005125 GO:GO:0008134 GO:GO:0031175 GO:GO:0071347 GO:GO:0050930
GO:GO:0008156 GO:GO:0034341 GO:GO:0002053 GO:GO:0014911 GO:GO:0045663
GO:GO:0008097 GO:GO:0003681 GO:GO:0051861 Pfam:PF09011 GO:GO:0051450
OrthoDB:EOG4KWJV1 HOGENOM:HOG000197861 KO:K10802 CTD:3146
HOVERGEN:HBG009000 GO:GO:0050786 EMBL:M64986 EMBL:Y00463
EMBL:AF275734 EMBL:BC061779 EMBL:BC081839 EMBL:BC088402
IPI:IPI00555214 PIR:A41175 RefSeq:NP_037095.1 UniGene:Rn.144565
UniGene:Rn.15185 UniGene:Rn.4121 PDB:1AAB PDB:1CKT PDB:1HME PDB:1HMF
PDB:2GZK PDBsum:1AAB PDBsum:1CKT PDBsum:1HME PDBsum:1HMF PDBsum:2GZK
ProteinModelPortal:P63159 SMR:P63159 STRING:P63159 PhosphoSite:P63159
PRIDE:P63159 GeneID:25459 KEGG:rno:25459 InParanoid:P63159
EvolutionaryTrace:P63159 NextBio:606729 ArrayExpress:P63159
Genevestigator:P63159 GermOnline:ENSRNOG00000030351 GO:GO:0000402
GO:GO:0000401 GO:GO:0032392 GO:GO:0050831 Uniprot:P63159
Length = 215
Score = 126 (49.4 bits), Expect = 4.3e-08, P = 4.3e-08
Identities = 27/89 (30%), Positives = 45/89 (50%)
Query: 36 KQQTSQPLSIPEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEK 95
K +T + P PK+P + +F F + R KI +P + I +V K + E W +K
Sbjct: 82 KGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDK 141
Query: 96 KRLENEYAKEKEIYAQNVKKYHDELTPEA 124
+ E + AK KE Y +++ Y + P+A
Sbjct: 142 QPYEKKAAKLKEKYEKDIAAYRAKGKPDA 170
Score = 89 (36.4 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 20/73 (27%), Positives = 37/73 (50%)
Query: 46 PEKPKKPLTPYFKFQGQIRNKIMERNPN--IKIIEVTKLVSEEWKKIGEAEKKRLENEYA 103
P+KP+ ++ Y F R + +++P+ + E +K SE WK + EK + E+
Sbjct: 6 PKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAK 65
Query: 104 KEKEIYAQNVKKY 116
+K Y + +K Y
Sbjct: 66 ADKARYEREMKTY 78
Score = 49 (22.3 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 7/20 (35%), Positives = 14/20 (70%)
Query: 148 FRETGKPKKPGNSFYLFIKD 167
F++ PK+P ++F+LF +
Sbjct: 89 FKDPNAPKRPPSAFFLFCSE 108
>RGD|1596979 [details] [associations]
symbol:LOC678705 "hypothetical protein LOC678705" species:10116
"Rattus norvegicus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] REFSEQ:XM_001053005
Ncbi:XP_001053005
Length = 214
Score = 125 (49.1 bits), Expect = 5.5e-08, P = 5.5e-08
Identities = 27/89 (30%), Positives = 45/89 (50%)
Query: 36 KQQTSQPLSIPEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEK 95
K +T + P PK+P + +F F + R KI +P + I +V K + E W +K
Sbjct: 82 KGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEIWNNTAADDK 141
Query: 96 KRLENEYAKEKEIYAQNVKKYHDELTPEA 124
+ E + AK KE Y +++ Y + P+A
Sbjct: 142 QPYEKKAAKLKEKYEKDIAAYRAKGKPDA 170
Score = 89 (36.4 bits), Expect = 0.00030, Sum P(2) = 0.00030
Identities = 20/73 (27%), Positives = 37/73 (50%)
Query: 46 PEKPKKPLTPYFKFQGQIRNKIMERNPN--IKIIEVTKLVSEEWKKIGEAEKKRLENEYA 103
P+KP+ ++ Y F R + +++P+ + E +K SE WK + EK + E+
Sbjct: 6 PKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAK 65
Query: 104 KEKEIYAQNVKKY 116
+K Y + +K Y
Sbjct: 66 ADKARYEREMKTY 78
Score = 49 (22.3 bits), Expect = 0.00030, Sum P(2) = 0.00030
Identities = 7/20 (35%), Positives = 14/20 (70%)
Query: 148 FRETGKPKKPGNSFYLFIKD 167
F++ PK+P ++F+LF +
Sbjct: 89 FKDPNAPKRPPSAFFLFCSE 108
>UNIPROTKB|E1BMK2 [details] [associations]
symbol:E1BMK2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0005737
GO:GO:0005615 GO:GO:0003677 GO:GO:0030324 GO:GO:0045944
GO:GO:0051384 GO:GO:0043005 GO:GO:0045860 GO:GO:0030295
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0045819 GO:GO:0001654 Pfam:PF09011 GO:GO:0045639
GeneTree:ENSGT00560000076717 GO:GO:0010858 GO:GO:2000426
EMBL:DAAA02042275 IPI:IPI00688378 Ensembl:ENSBTAT00000019791
OMA:EXDIAAY Uniprot:E1BMK2
Length = 215
Score = 125 (49.1 bits), Expect = 5.7e-08, P = 5.7e-08
Identities = 27/89 (30%), Positives = 45/89 (50%)
Query: 36 KQQTSQPLSIPEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEK 95
K +T + P PK+P + +F F + R KI +P + I +V K + E W +K
Sbjct: 82 KGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAVDDK 141
Query: 96 KRLENEYAKEKEIYAQNVKKYHDELTPEA 124
+ E + AK KE Y +++ Y + P+A
Sbjct: 142 QPYEKKAAKLKEKYEKDIAAYRAKGKPDA 170
Score = 88 (36.0 bits), Expect = 0.00041, Sum P(2) = 0.00041
Identities = 20/73 (27%), Positives = 37/73 (50%)
Query: 46 PEKPKKPLTPYFKFQGQIRNKIMERNPN--IKIIEVTKLVSEEWKKIGEAEKKRLENEYA 103
P+KP+ ++ Y F R + +++P+ + E +K SE WK + EK + E+
Sbjct: 6 PKKPRGKMSSYAFFVQTCREEHTKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAK 65
Query: 104 KEKEIYAQNVKKY 116
+K Y + +K Y
Sbjct: 66 VDKARYEREMKTY 78
Score = 49 (22.3 bits), Expect = 0.00041, Sum P(2) = 0.00041
Identities = 7/20 (35%), Positives = 14/20 (70%)
Query: 148 FRETGKPKKPGNSFYLFIKD 167
F++ PK+P ++F+LF +
Sbjct: 89 FKDPNAPKRPPSAFFLFCSE 108
>MGI|MGI:1098219 [details] [associations]
symbol:Hmgb3 "high mobility group box 3" species:10090 "Mus
musculus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005694 "chromosome" evidence=IEA]
[GO:0045578 "negative regulation of B cell differentiation"
evidence=IDA] [GO:0045638 "negative regulation of myeloid cell
differentiation" evidence=IDA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 MGI:MGI:1098219 Pfam:PF00505
GO:GO:0005634 GO:GO:0005694 GO:GO:0003677 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0045638
Pfam:PF09011 GO:GO:0045578 HOGENOM:HOG000197861 HOVERGEN:HBG009000
OrthoDB:EOG4TTGK2 eggNOG:NOG320947 CTD:3149 KO:K11296 EMBL:AF022465
EMBL:BC011276 EMBL:BC083352 IPI:IPI00228879 RefSeq:NP_032279.1
UniGene:Mm.336087 ProteinModelPortal:O54879 SMR:O54879
STRING:O54879 PhosphoSite:O54879 PaxDb:O54879 PRIDE:O54879
Ensembl:ENSMUST00000015361 Ensembl:ENSMUST00000072699
Ensembl:ENSMUST00000088874 Ensembl:ENSMUST00000114582 GeneID:15354
KEGG:mmu:15354 InParanoid:O54879 NextBio:287964 Bgee:O54879
CleanEx:MM_HMGB3 Genevestigator:O54879
GermOnline:ENSMUSG00000015217 Uniprot:O54879
Length = 200
Score = 123 (48.4 bits), Expect = 6.8e-08, P = 6.8e-08
Identities = 26/71 (36%), Positives = 38/71 (53%)
Query: 46 PEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAKE 105
P PK+P + +F F + R KI NP I I +V K + E W + + EK+ + AK
Sbjct: 90 PNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLSDNEKQPYVTKAAKL 149
Query: 106 KEIYAQNVKKY 116
KE Y ++V Y
Sbjct: 150 KEKYEKDVADY 160
Score = 97 (39.2 bits), Expect = 7.2e-05, Sum P(2) = 7.2e-05
Identities = 23/74 (31%), Positives = 39/74 (52%)
Query: 46 PEKPKKPLTPYFKFQGQIRNKIMERNPNIKI--IEVTKLVSEEWKKIGEAEKKRLENEYA 103
P+KPK ++ Y F R + ++NP + + E +K SE WK + EK + + E A
Sbjct: 6 PKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSSKEKSKFD-EMA 64
Query: 104 KEKEI-YAQNVKKY 116
K ++ Y + +K Y
Sbjct: 65 KADKVRYDREMKDY 78
Score = 42 (19.8 bits), Expect = 7.2e-05, Sum P(2) = 7.2e-05
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 149 RETGKPKKPGNSFYLFIKD 167
++ PK+P + F+LF +
Sbjct: 88 KDPNAPKRPPSGFFLFCSE 106
>RGD|1589841 [details] [associations]
symbol:LOC690940 "similar to High mobility group protein 1
(HMG-1) (High mobility group protein B1) (Amphoterin)
(Heparin-binding protein p30)" species:10116 "Rattus norvegicus"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] REFSEQ:XM_001076232 Ncbi:XP_001076232
Length = 214
Score = 124 (48.7 bits), Expect = 7.2e-08, P = 7.2e-08
Identities = 27/89 (30%), Positives = 44/89 (49%)
Query: 36 KQQTSQPLSIPEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEK 95
K +T + P PK+P + +F F + R KI +P + I +V K + E W +K
Sbjct: 82 KGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTASDDK 141
Query: 96 KRLENEYAKEKEIYAQNVKKYHDELTPEA 124
+ E + AK KE Y ++ Y + P+A
Sbjct: 142 QPYEKKAAKLKEKYEKDTAAYRAKGKPDA 170
Score = 94 (38.1 bits), Expect = 5.6e-05, Sum P(2) = 5.6e-05
Identities = 21/73 (28%), Positives = 38/73 (52%)
Query: 46 PEKPKKPLTPYFKFQGQIRNKIMERNPN--IKIIEVTKLVSEEWKKIGEAEKKRLENEYA 103
P+KP+ ++ Y F R + +++P+ + EV+K SE WK + EK + E+
Sbjct: 6 PKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEVSKKCSERWKTMSAKEKGKFEDMAK 65
Query: 104 KEKEIYAQNVKKY 116
+K Y + +K Y
Sbjct: 66 ADKARYEREMKTY 78
Score = 49 (22.3 bits), Expect = 5.6e-05, Sum P(2) = 5.6e-05
Identities = 7/20 (35%), Positives = 14/20 (70%)
Query: 148 FRETGKPKKPGNSFYLFIKD 167
F++ PK+P ++F+LF +
Sbjct: 89 FKDPNAPKRPPSAFFLFCSE 108
>RGD|1593466 [details] [associations]
symbol:LOC689398 "similar to High mobility group protein 1
(HMG-1) (High mobility group protein B1) (Amphoterin)
(Heparin-binding protein p30)" species:10116 "Rattus norvegicus"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] REFSEQ:XM_001068941 Ncbi:XP_001068941
Length = 214
Score = 124 (48.7 bits), Expect = 7.2e-08, P = 7.2e-08
Identities = 27/89 (30%), Positives = 44/89 (49%)
Query: 36 KQQTSQPLSIPEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEK 95
K +T + P PK+P + +F F + R KI +P + I +V K + E W +K
Sbjct: 82 KGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTASDDK 141
Query: 96 KRLENEYAKEKEIYAQNVKKYHDELTPEA 124
+ E + AK KE Y ++ Y + P+A
Sbjct: 142 QPYEKKAAKLKEKYEKDTAAYRAKGKPDA 170
Score = 94 (38.1 bits), Expect = 5.6e-05, Sum P(2) = 5.6e-05
Identities = 21/73 (28%), Positives = 38/73 (52%)
Query: 46 PEKPKKPLTPYFKFQGQIRNKIMERNPN--IKIIEVTKLVSEEWKKIGEAEKKRLENEYA 103
P+KP+ ++ Y F R + +++P+ + EV+K SE WK + EK + E+
Sbjct: 6 PKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEVSKKCSERWKTMSAKEKGKFEDMAK 65
Query: 104 KEKEIYAQNVKKY 116
+K Y + +K Y
Sbjct: 66 ADKARYEREMKTY 78
Score = 49 (22.3 bits), Expect = 5.6e-05, Sum P(2) = 5.6e-05
Identities = 7/20 (35%), Positives = 14/20 (70%)
Query: 148 FRETGKPKKPGNSFYLFIKD 167
F++ PK+P ++F+LF +
Sbjct: 89 FKDPNAPKRPPSAFFLFCSE 108
>UNIPROTKB|P12682 [details] [associations]
symbol:HMGB1 "High mobility group protein B1" species:9823
"Sus scrofa" [GO:0051103 "DNA ligation involved in DNA repair"
evidence=IDA] [GO:0017055 "negative regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=ISS]
[GO:0000793 "condensed chromosome" evidence=ISS] [GO:0006288
"base-excision repair, DNA ligation" evidence=ISS] [GO:0005634
"nucleus" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
GO:GO:0005634 GO:GO:0003677 eggNOG:COG5648 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0000793
Pfam:PF09011 OrthoDB:EOG4KWJV1 HOGENOM:HOG000197861 KO:K10802
GO:GO:0017055 CTD:3146 HOVERGEN:HBG009000 GO:GO:0006288 EMBL:M21683
PIR:A28897 RefSeq:NP_001004034.1 UniGene:Ssc.22696
ProteinModelPortal:P12682 SMR:P12682 STRING:P12682 PRIDE:P12682
GeneID:445521 KEGG:ssc:445521 Uniprot:P12682
Length = 215
Score = 124 (48.7 bits), Expect = 7.4e-08, P = 7.4e-08
Identities = 27/89 (30%), Positives = 44/89 (49%)
Query: 36 KQQTSQPLSIPEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEK 95
K +T + P PK+P + +F F + R KI +P + I +V K + E W +K
Sbjct: 82 KGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDK 141
Query: 96 KRLENEYAKEKEIYAQNVKKYHDELTPEA 124
E + AK KE Y +++ Y + P+A
Sbjct: 142 HPYEKKAAKLKEKYEKDIAAYRAKGKPDA 170
Score = 89 (36.4 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 20/73 (27%), Positives = 37/73 (50%)
Query: 46 PEKPKKPLTPYFKFQGQIRNKIMERNPN--IKIIEVTKLVSEEWKKIGEAEKKRLENEYA 103
P+KP+ ++ Y F R + +++P+ + E +K SE WK + EK + E+
Sbjct: 6 PKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAK 65
Query: 104 KEKEIYAQNVKKY 116
+K Y + +K Y
Sbjct: 66 ADKARYEREMKTY 78
Score = 49 (22.3 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 7/20 (35%), Positives = 14/20 (70%)
Query: 148 FRETGKPKKPGNSFYLFIKD 167
F++ PK+P ++F+LF +
Sbjct: 89 FKDPNAPKRPPSAFFLFCSE 108
>UNIPROTKB|J3KT85 [details] [associations]
symbol:SMARCE1 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily E member 1"
species:9606 "Homo sapiens" [GO:0016514 "SWI/SNF complex"
evidence=IEA] [GO:0071564 "npBAF complex" evidence=IEA] [GO:0071565
"nBAF complex" evidence=IEA] InterPro:IPR009071 Pfam:PF00505
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
HGNC:HGNC:11109 EMBL:AC004585 EMBL:AC073508 Ensembl:ENST00000577721
Uniprot:J3KT85
Length = 101
Score = 122 (48.0 bits), Expect = 8.7e-08, P = 8.7e-08
Identities = 23/100 (23%), Positives = 49/100 (49%)
Query: 55 PYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAKEKEIYAQNVK 114
PY ++ ++ +++ NP++K+ E+ K++ W+ + + EK+ NEY EK Y +++K
Sbjct: 2 PYMRYSRKVWDQVKASNPDLKLWEIGKIIGGMWRDLTDEEKQEYLNEYEAEKIEYNESMK 61
Query: 115 KYHDELTPEAIEFLRXXXXXXXXXXXXXXXXXLFRETGKP 154
YH+ +P + ++ E G+P
Sbjct: 62 AYHN--SPAYLAYINAKSRAEAALEEESRQRQSRMEKGEP 99
>TAIR|locus:505006135 [details] [associations]
symbol:HMGB2 "high mobility group B2" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM;IDA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0000785 "chromatin" evidence=TAS]
[GO:0003682 "chromatin binding" evidence=TAS] [GO:0006333
"chromatin assembly or disassembly" evidence=RCA;TAS] [GO:0030527
"structural constituent of chromatin" evidence=TAS] [GO:0006096
"glycolysis" evidence=RCA] [GO:0006833 "water transport"
evidence=RCA] [GO:0006972 "hyperosmotic response" evidence=RCA]
[GO:0007030 "Golgi organization" evidence=RCA] [GO:0009266
"response to temperature stimulus" evidence=RCA] [GO:0009651
"response to salt stress" evidence=RCA] [GO:0046686 "response to
cadmium ion" evidence=RCA] [GO:0003677 "DNA binding"
evidence=ISS;IDA] InterPro:IPR009071 Pfam:PF00505 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005634 GO:GO:0003677
GO:GO:0000785 EMBL:AC069251 GO:GO:0003700 GO:GO:0003682
eggNOG:COG5648 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0006333 HSSP:P07155 EMBL:Y14072 EMBL:AF370248
EMBL:AY063064 EMBL:AK118543 EMBL:AB493468 EMBL:AY084731
IPI:IPI00532636 IPI:IPI00657279 IPI:IPI00846437 PIR:F86339
PIR:T51597 RefSeq:NP_001031074.1 RefSeq:NP_001077569.1
RefSeq:NP_564123.1 UniGene:At.21298 ProteinModelPortal:O49596
SMR:O49596 STRING:O49596 PaxDb:O49596 PRIDE:O49596
EnsemblPlants:AT1G20693.1 GeneID:838658 KEGG:ath:AT1G20693
TAIR:At1g20693 HOGENOM:HOG000197860 InParanoid:O49596 OMA:YVAKANK
PhylomeDB:O49596 ProtClustDB:CLSN2687884 Genevestigator:O49596
GO:GO:0030527 Uniprot:O49596
Length = 144
Score = 122 (48.0 bits), Expect = 8.7e-08, P = 8.7e-08
Identities = 24/76 (31%), Positives = 39/76 (51%)
Query: 46 PEKPKKPLTPYFKFQGQIRNKIMERNP-NIKIIEVTKLVSEEWKKIGEAEKKRLENEYAK 104
P KPK+P + +F F R + NP N + V K ++WK + ++EK + K
Sbjct: 35 PNKPKRPASAFFVFMEDFRETFKKENPKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAEK 94
Query: 105 EKEIYAQNVKKYHDEL 120
K Y +N+K Y+ +L
Sbjct: 95 RKVEYEKNIKAYNKKL 110
>SGD|S000004676 [details] [associations]
symbol:ABF2 "Mitochondrial DNA-binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0005739 "mitochondrion"
evidence=IEA;IDA] [GO:0005634 "nucleus" evidence=IEA] [GO:0090139
"mitochondrial DNA packaging" evidence=IMP] [GO:0000001
"mitochondrion inheritance" evidence=IMP] [GO:0000002
"mitochondrial genome maintenance" evidence=IMP] [GO:0003677 "DNA
binding" evidence=IEA;IDA] [GO:0000262 "mitochondrial chromosome"
evidence=IDA] [GO:0008301 "DNA binding, bending" evidence=IDA]
[GO:0042645 "mitochondrial nucleoid" evidence=IDA]
InterPro:IPR009071 SGD:S000004676 Pfam:PF00505 GO:GO:0005634
EMBL:M73753 EMBL:AJ223169 EMBL:Z48952 EMBL:AY557967 EMBL:BK006946
PIR:A41302 RefSeq:NP_013788.1 ProteinModelPortal:Q02486 SMR:Q02486
DIP:DIP-5492N IntAct:Q02486 MINT:MINT-505363 STRING:Q02486
PaxDb:Q02486 PeptideAtlas:Q02486 EnsemblFungi:YMR072W GeneID:855094
KEGG:sce:YMR072W CYGD:YMR072w eggNOG:COG5648
GeneTree:ENSGT00680000100562 OMA:FHESSKP OrthoDB:EOG483HF0
NextBio:978405 Genevestigator:Q02486 GermOnline:YMR072W
GO:GO:0000262 GO:GO:0008301 GO:GO:0090139 GO:GO:0000001
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Uniprot:Q02486
Length = 183
Score = 120 (47.3 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 33/109 (30%), Positives = 58/109 (53%)
Query: 16 VFNLRSCLMPHLNSVTTAGLKQQTSQPLSIPEKPKKPLTPYFKFQGQIRNKIMERNPNIK 75
+FNL S L+ A + Q L I + PK+P + YF + R++ ++ NP ++
Sbjct: 18 LFNLASTLLK-------ASKRTQLRNEL-IKQGPKRPTSAYFLYLQDHRSQFVKENPTLR 69
Query: 76 IIEVTKLVSEEWKKIGEAEKKRLENEYAKEKEIYA--QNVKKYHDELTP 122
E++K+ E+W+ + EA+ K E ++ K++Y+ Q KK DE P
Sbjct: 70 PAEISKIAGEKWQNL-EADIK--EKYISERKKLYSEYQKAKKEFDEKLP 115
Score = 106 (42.4 bits), Expect = 9.6e-05, P = 9.6e-05
Identities = 15/61 (24%), Positives = 38/61 (62%)
Query: 49 PKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAKEKEI 108
PKKP P+ K+ ++R+++ ++P+ +++ K++ ++W+ + ++ K + EY K +
Sbjct: 116 PKKPAGPFIKYANEVRSQVFAQHPDKSQLDLMKIIGDKWQSLDQSIKDKYIQEYKKAIQE 175
Query: 109 Y 109
Y
Sbjct: 176 Y 176
>CGD|CAF0007020 [details] [associations]
symbol:NHP6A species:5476 "Candida albicans" [GO:0003677 "DNA
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0032301 "MutSalpha complex"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
[GO:0034724 "DNA replication-independent nucleosome organization"
evidence=IEA] [GO:0070898 "RNA polymerase III transcriptional
preinitiation complex assembly" evidence=IEA] [GO:0051123 "RNA
polymerase II transcriptional preinitiation complex assembly"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0008301 "DNA binding, bending" evidence=IEA] InterPro:IPR009071
CGD:CAF0007020 Pfam:PF00505 GO:GO:0005634 GO:GO:0005694
GO:GO:0006355 GO:GO:0003677 GO:GO:0006281 GO:GO:0006351
eggNOG:COG5648 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 EMBL:AACQ01000005 EMBL:AACQ01000006 EMBL:AF196333
ProteinModelPortal:Q9UVL1 SMR:Q9UVL1 STRING:Q9UVL1 Uniprot:Q9UVL1
Length = 92
Score = 120 (47.3 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 24/83 (28%), Positives = 45/83 (54%)
Query: 34 GLKQQTSQPLSIPEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEA 93
G ++++S+ P+ PK+ L+ Y F + R+ + NP I +V KL+ E+WK +
Sbjct: 4 GERKKSSRKKKDPDAPKRSLSAYMFFANENRDIVRAENPGISFGQVGKLLGEKWKALNSE 63
Query: 94 EKKRLENEYAKEKEIYAQNVKKY 116
+K EN+ +K+ Y + +Y
Sbjct: 64 DKLPYENKAEADKKRYEKEKAEY 86
>UNIPROTKB|Q9UVL1 [details] [associations]
symbol:NHP6 "Non-histone chromosomal protein 6"
species:237561 "Candida albicans SC5314" [GO:0003677 "DNA binding"
evidence=IDA] InterPro:IPR009071 CGD:CAF0007020 Pfam:PF00505
GO:GO:0005634 GO:GO:0005694 GO:GO:0006355 GO:GO:0003677
GO:GO:0006281 GO:GO:0006351 eggNOG:COG5648 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 EMBL:AACQ01000005
EMBL:AACQ01000006 EMBL:AF196333 ProteinModelPortal:Q9UVL1
SMR:Q9UVL1 STRING:Q9UVL1 Uniprot:Q9UVL1
Length = 92
Score = 120 (47.3 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 24/83 (28%), Positives = 45/83 (54%)
Query: 34 GLKQQTSQPLSIPEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEA 93
G ++++S+ P+ PK+ L+ Y F + R+ + NP I +V KL+ E+WK +
Sbjct: 4 GERKKSSRKKKDPDAPKRSLSAYMFFANENRDIVRAENPGISFGQVGKLLGEKWKALNSE 63
Query: 94 EKKRLENEYAKEKEIYAQNVKKY 116
+K EN+ +K+ Y + +Y
Sbjct: 64 DKLPYENKAEADKKRYEKEKAEY 86
>UNIPROTKB|B2RPK0 [details] [associations]
symbol:HMGB1P1 "Putative high mobility group protein
B1-like 1" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005694
"chromosome" evidence=IEA] InterPro:IPR009071 PROSITE:PS00353
Pfam:PF00505 GO:GO:0005634 GO:GO:0005694 GO:GO:0003677
eggNOG:COG5648 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 Pfam:PF09011 EMBL:AL160176 UniGene:Hs.131543
EMBL:BC137482 EMBL:BC137483 IPI:IPI00022796
ProteinModelPortal:B2RPK0 SMR:B2RPK0 STRING:B2RPK0 PaxDb:B2RPK0
PRIDE:B2RPK0 GeneCards:GC20M056062 HGNC:HGNC:4993
neXtProt:NX_B2RPK0 InParanoid:B2RPK0 OrthoDB:EOG4KWJV1
PhylomeDB:B2RPK0 NextBio:39267 Genevestigator:B2RPK0 Uniprot:B2RPK0
Length = 211
Score = 121 (47.7 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 27/89 (30%), Positives = 44/89 (49%)
Query: 36 KQQTSQPLSIPEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEK 95
K +T + P PK+P + +F F + KI +P + I +V K + E W +K
Sbjct: 82 KGETKKKFKDPNAPKRPPSAFFLFCSEYHPKIKGEHPGLSIGDVAKKLGEMWNNTAADDK 141
Query: 96 KRLENEYAKEKEIYAQNVKKYHDELTPEA 124
+ E + AK KE Y +++ Y + PEA
Sbjct: 142 QPGEKKAAKLKEKYEKDIAAYQAKGKPEA 170
>RGD|1589528 [details] [associations]
symbol:LOC679344 "similar to High mobility group protein 1
(HMG-1) (High mobility group protein B1) (Amphoterin)
(Heparin-binding protein p30)" species:10116 "Rattus norvegicus"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] REFSEQ:XM_001054795 Ncbi:XP_001054795
Length = 215
Score = 121 (47.7 bits), Expect = 1.7e-07, P = 1.7e-07
Identities = 26/89 (29%), Positives = 44/89 (49%)
Query: 36 KQQTSQPLSIPEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEK 95
K +T + P PK+P + +F F + KI +P + I +V K + E W +K
Sbjct: 82 KGETKKKFKDPNAPKRPPSAFFLFCSEYHPKIKGEHPGLSIGDVAKKLGEMWNNTAADDK 141
Query: 96 KRLENEYAKEKEIYAQNVKKYHDELTPEA 124
+ E + AK KE Y +++ Y + P+A
Sbjct: 142 QPCEKKAAKLKEKYEKDIAAYRAKGKPDA 170
>RGD|1592627 [details] [associations]
symbol:LOC685520 "similar to High mobility group protein 1
(HMG-1) (High mobility group protein B1) (Amphoterin)
(Heparin-binding protein p30)" species:10116 "Rattus norvegicus"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] REFSEQ:XM_003749913 Ncbi:XP_003749961
Length = 215
Score = 121 (47.7 bits), Expect = 1.7e-07, P = 1.7e-07
Identities = 26/89 (29%), Positives = 44/89 (49%)
Query: 36 KQQTSQPLSIPEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEK 95
K +T + P PK+P + +F F + KI +P + I +V K + E W +K
Sbjct: 82 KGETKKKFKDPNAPKRPPSAFFLFCSEYHPKIKGEHPGLSIGDVAKKLGEMWNNTAADDK 141
Query: 96 KRLENEYAKEKEIYAQNVKKYHDELTPEA 124
+ E + AK KE Y +++ Y + P+A
Sbjct: 142 QPCEKKAAKLKEKYEKDIAAYRAKGKPDA 170
>SGD|S000002581 [details] [associations]
symbol:HMO1 "Chromatin associated high mobility group (HMG)
family member" species:4932 "Saccharomyces cerevisiae" [GO:0005737
"cytoplasm" evidence=IDA] [GO:0034401 "regulation of transcription
by chromatin organization" evidence=IDA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA;IDA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0060962
"regulation of ribosomal protein gene transcription from RNA
polymerase II promoter" evidence=IGI;IMP] [GO:0006356 "regulation
of transcription from RNA polymerase I promoter" evidence=IGI;IMP]
[GO:0000790 "nuclear chromatin" evidence=IDA] [GO:0008301 "DNA
binding, bending" evidence=IDA] [GO:0000400 "four-way junction DNA
binding" evidence=IDA] [GO:0003690 "double-stranded DNA binding"
evidence=IDA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR009071 PROSITE:PS00353 SGD:S000002581 Pfam:PF00505
GO:GO:0005737 GO:GO:0005730 EMBL:BK006938 eggNOG:COG5648
GO:GO:0008301 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0003690 GO:GO:0034401 GO:GO:0006356
EMBL:Z46727 GO:GO:0000400 EMBL:AY557680 PIR:S49770
RefSeq:NP_010459.1 ProteinModelPortal:Q03973 SMR:Q03973
DIP:DIP-1687N IntAct:Q03973 MINT:MINT-407581 STRING:Q03973
PaxDb:Q03973 PeptideAtlas:Q03973 EnsemblFungi:YDR174W GeneID:851754
KEGG:sce:YDR174W CYGD:YDR174w HOGENOM:HOG000001040 OMA:FFAYSAY
OrthoDB:EOG40P7HK NextBio:969516 Genevestigator:Q03973
GermOnline:YDR174W GO:GO:0060962 Uniprot:Q03973
Length = 246
Score = 122 (48.0 bits), Expect = 2.1e-07, P = 2.1e-07
Identities = 24/76 (31%), Positives = 42/76 (55%)
Query: 46 PEKPKKPLTPYFKFQGQIRNKIMERN-----PNIKIIEVTKLVSEEWKKIGEAEKKRLEN 100
P PKKPLT +F + +R ++ E P + E+T+ +S++WK++ + EK++ +
Sbjct: 103 PNAPKKPLTVFFAYSAYVRQELREDRQKAGLPPLSSTEITQEISKKWKELSDNEKEKWKQ 162
Query: 101 EYAKEKEIYAQNVKKY 116
Y E E Y + KY
Sbjct: 163 AYNVELENYQREKSKY 178
>UNIPROTKB|F1N927 [details] [associations]
symbol:HMGB1 "High mobility group protein B1" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0000793
"condensed chromosome" evidence=IEA] [GO:0001654 "eye development"
evidence=IEA] [GO:0002437 "inflammatory response to antigenic
stimulus" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0005125 "cytokine
activity" evidence=IEA] [GO:0005615 "extracellular space"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006288
"base-excision repair, DNA ligation" evidence=IEA] [GO:0009986
"cell surface" evidence=IEA] [GO:0010858 "calcium-dependent protein
kinase regulator activity" evidence=IEA] [GO:0017053
"transcriptional repressor complex" evidence=IEA] [GO:0017055
"negative regulation of RNA polymerase II transcriptional
preinitiation complex assembly" evidence=IEA] [GO:0030295 "protein
kinase activator activity" evidence=IEA] [GO:0030324 "lung
development" evidence=IEA] [GO:0033151 "V(D)J recombination"
evidence=IEA] [GO:0043005 "neuron projection" evidence=IEA]
[GO:0043065 "positive regulation of apoptotic process"
evidence=IEA] [GO:0043280 "positive regulation of cysteine-type
endopeptidase activity involved in apoptotic process" evidence=IEA]
[GO:0043388 "positive regulation of DNA binding" evidence=IEA]
[GO:0045639 "positive regulation of myeloid cell differentiation"
evidence=IEA] [GO:0045819 "positive regulation of glycogen
catabolic process" evidence=IEA] [GO:0045944 "positive regulation
of transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0051384 "response to glucocorticoid stimulus" evidence=IEA]
[GO:0070491 "repressing transcription factor binding" evidence=IEA]
[GO:2000426 "negative regulation of apoptotic cell clearance"
evidence=IEA] InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353
Pfam:PF00505 GO:GO:0005737 GO:GO:0017053 GO:GO:0005615
GO:GO:0009986 GO:GO:0005730 GO:GO:0002437 GO:GO:0003677
GO:GO:0045944 GO:GO:0051384 GO:GO:0043005 GO:GO:0003700
GO:GO:0045860 GO:GO:0030295 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0043065 GO:GO:0043280
GO:GO:0045819 GO:GO:0000793 GO:GO:0043388 Pfam:PF09011
GO:GO:0045639 OMA:GEDAMRK GO:GO:0017055
GeneTree:ENSGT00560000076717 GO:GO:0006288 GO:GO:0010858
GO:GO:2000426 EMBL:AADN02005232 IPI:IPI00818014
Ensembl:ENSGALT00000036454 ArrayExpress:F1N927 Uniprot:F1N927
Length = 214
Score = 120 (47.3 bits), Expect = 2.2e-07, P = 2.2e-07
Identities = 25/81 (30%), Positives = 41/81 (50%)
Query: 36 KQQTSQPLSIPEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEK 95
K +T + P PK+P + +F F + R KI +P + I +V K + E W +K
Sbjct: 82 KGETKKKFKDPNAPKRPPSAFFLFCSEFRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDK 141
Query: 96 KRLENEYAKEKEIYAQNVKKY 116
+ E + AK KE Y +++ Y
Sbjct: 142 QPYEKKAAKLKEKYEKDIAAY 162
Score = 89 (36.4 bits), Expect = 0.00030, Sum P(2) = 0.00030
Identities = 20/73 (27%), Positives = 37/73 (50%)
Query: 46 PEKPKKPLTPYFKFQGQIRNKIMERNPN--IKIIEVTKLVSEEWKKIGEAEKKRLENEYA 103
P+KP+ ++ Y F R + +++P+ + E +K SE WK + EK + E+
Sbjct: 6 PKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSSKEKGKFEDMAK 65
Query: 104 KEKEIYAQNVKKY 116
+K Y + +K Y
Sbjct: 66 ADKLRYEKEMKNY 78
Score = 49 (22.3 bits), Expect = 0.00030, Sum P(2) = 0.00030
Identities = 7/20 (35%), Positives = 14/20 (70%)
Query: 148 FRETGKPKKPGNSFYLFIKD 167
F++ PK+P ++F+LF +
Sbjct: 89 FKDPNAPKRPPSAFFLFCSE 108
>UNIPROTKB|Q9YH06 [details] [associations]
symbol:HMG1 "High mobility group 1 protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0000793
"condensed chromosome" evidence=IEA] [GO:0001654 "eye development"
evidence=IEA] [GO:0002437 "inflammatory response to antigenic
stimulus" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0005125 "cytokine
activity" evidence=IEA] [GO:0005615 "extracellular space"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006288
"base-excision repair, DNA ligation" evidence=IEA] [GO:0009986
"cell surface" evidence=IEA] [GO:0010858 "calcium-dependent protein
kinase regulator activity" evidence=IEA] [GO:0017053
"transcriptional repressor complex" evidence=IEA] [GO:0017055
"negative regulation of RNA polymerase II transcriptional
preinitiation complex assembly" evidence=IEA] [GO:0030295 "protein
kinase activator activity" evidence=IEA] [GO:0030324 "lung
development" evidence=IEA] [GO:0033151 "V(D)J recombination"
evidence=IEA] [GO:0043005 "neuron projection" evidence=IEA]
[GO:0043065 "positive regulation of apoptotic process"
evidence=IEA] [GO:0043280 "positive regulation of cysteine-type
endopeptidase activity involved in apoptotic process" evidence=IEA]
[GO:0043388 "positive regulation of DNA binding" evidence=IEA]
[GO:0045639 "positive regulation of myeloid cell differentiation"
evidence=IEA] [GO:0045819 "positive regulation of glycogen
catabolic process" evidence=IEA] [GO:0045944 "positive regulation
of transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0051384 "response to glucocorticoid stimulus" evidence=IEA]
[GO:0070491 "repressing transcription factor binding" evidence=IEA]
[GO:2000426 "negative regulation of apoptotic cell clearance"
evidence=IEA] InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353
Pfam:PF00505 GO:GO:0005737 GO:GO:0017053 GO:GO:0005615
GO:GO:0009986 GO:GO:0005730 GO:GO:0002437 GO:GO:0003677
GO:GO:0045944 GO:GO:0051384 GO:GO:0043005 GO:GO:0003700
GO:GO:0045860 GO:GO:0030295 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0043065 GO:GO:0043280
GO:GO:0045819 GO:GO:0000793 GO:GO:0043388 Pfam:PF09011
GO:GO:0045639 HSSP:P07155 HOGENOM:HOG000197861 OMA:GEDAMRK
KO:K10802 GO:GO:0017055 CTD:3146 GeneTree:ENSGT00560000076717
HOVERGEN:HBG009000 GO:GO:0006288 GO:GO:0010858 GO:GO:2000426
EMBL:AADN02005232 EMBL:Y17968 EMBL:AJ851648 IPI:IPI00595982
RefSeq:NP_990233.1 UniGene:Gga.4638 SMR:Q9YH06 STRING:Q9YH06
Ensembl:ENSGALT00000027593 GeneID:395724 KEGG:gga:395724
InParanoid:Q9YH06 NextBio:20815793 Uniprot:Q9YH06
Length = 215
Score = 120 (47.3 bits), Expect = 2.2e-07, P = 2.2e-07
Identities = 25/81 (30%), Positives = 41/81 (50%)
Query: 36 KQQTSQPLSIPEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEK 95
K +T + P PK+P + +F F + R KI +P + I +V K + E W +K
Sbjct: 82 KGETKKKFKDPNAPKRPPSAFFLFCSEFRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDK 141
Query: 96 KRLENEYAKEKEIYAQNVKKY 116
+ E + AK KE Y +++ Y
Sbjct: 142 QPYEKKAAKLKEKYEKDIAAY 162
Score = 89 (36.4 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 20/73 (27%), Positives = 37/73 (50%)
Query: 46 PEKPKKPLTPYFKFQGQIRNKIMERNPN--IKIIEVTKLVSEEWKKIGEAEKKRLENEYA 103
P+KP+ ++ Y F R + +++P+ + E +K SE WK + EK + E+
Sbjct: 6 PKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSSKEKGKFEDMAK 65
Query: 104 KEKEIYAQNVKKY 116
+K Y + +K Y
Sbjct: 66 ADKLRYEKEMKNY 78
Score = 49 (22.3 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 7/20 (35%), Positives = 14/20 (70%)
Query: 148 FRETGKPKKPGNSFYLFIKD 167
F++ PK+P ++F+LF +
Sbjct: 89 FKDPNAPKRPPSAFFLFCSE 108
>RGD|1563668 [details] [associations]
symbol:RGD1563668 "similar to High mobility group protein 1
(HMG-1)" species:10116 "Rattus norvegicus" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
REFSEQ:XM_001074778 Ncbi:XP_001074778
Length = 211
Score = 119 (46.9 bits), Expect = 2.7e-07, P = 2.7e-07
Identities = 27/89 (30%), Positives = 43/89 (48%)
Query: 36 KQQTSQPLSIPEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEK 95
K +T + P PK P + +F F + R KI +P + I +V K + E W +K
Sbjct: 82 KGETKKKFKDPNAPKTPPSAFFLFCSEYRPKIKGEHPGLSIGDVVKKLGEMWTNTAADDK 141
Query: 96 KRLENEYAKEKEIYAQNVKKYHDELTPEA 124
+ E AK KE Y +++ Y + P+A
Sbjct: 142 QPYEKMAAKLKEKYEKDIAAYRAKGKPDA 170
>UNIPROTKB|P0C6E5 [details] [associations]
symbol:P0C6E5 "Putative high mobility group protein B3-like
protein" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005694
"chromosome" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0005694
GO:GO:0003677 eggNOG:COG5648 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 EMBL:AC067852 Pfam:PF09011
IPI:IPI00888935 ProteinModelPortal:P0C6E5 SMR:P0C6E5 STRING:P0C6E5
PhosphoSite:P0C6E5 DMDM:205539816 PaxDb:P0C6E5 PRIDE:P0C6E5
neXtProt:NX_P0C6E5 InParanoid:P0C6E5 PhylomeDB:P0C6E5
Genevestigator:P0C6E5 Uniprot:P0C6E5
Length = 187
Score = 115 (45.5 bits), Expect = 3.1e-06, P = 3.1e-06
Identities = 25/71 (35%), Positives = 38/71 (53%)
Query: 46 PEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAKE 105
P PK+P + +F F + K NP I I +V K + E WK + ++EK+ + AK
Sbjct: 89 PNAPKRPPSGFFLFCSEFCPKSKSTNPGIPIGDVAKKLGEMWKNLNDSEKQPYITQAAKL 148
Query: 106 KEIYAQNVKKY 116
KE Y ++V Y
Sbjct: 149 KEKYEKDVAVY 159
Score = 109 (43.4 bits), Expect = 2.8e-07, Sum P(2) = 2.8e-07
Identities = 26/74 (35%), Positives = 40/74 (54%)
Query: 46 PEKPKKPLTPYFKFQGQIRNKIMERNPNIKI--IEVTKLVSEEWKKIGEAEKKRLENEYA 103
P+KPK ++ Y F R + ++NP + I E +K SE WK + + EK + NE A
Sbjct: 6 PKKPKGKMSAYAFFVQTCREEHKKKNPKVPINFAEFSKKCSERWKTMSKKEKSKF-NELA 64
Query: 104 KEKEI-YAQNVKKY 116
K ++ Y Q +K Y
Sbjct: 65 KADKVHYDQEIKDY 78
Score = 43 (20.2 bits), Expect = 2.8e-07, Sum P(2) = 2.8e-07
Identities = 7/25 (28%), Positives = 14/25 (56%)
Query: 149 RETGKPKKPGNSFYLFIKDNIDKKE 173
++ PK+P + F+LF + K +
Sbjct: 87 KDPNAPKRPPSGFFLFCSEFCPKSK 111
>FB|FBgn0026582 [details] [associations]
symbol:CG9418 species:7227 "Drosophila melanogaster"
[GO:0003677 "DNA binding" evidence=ISS] InterPro:IPR009071
Pfam:PF00505 EMBL:AE013599 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GeneTree:ENSGT00700000104521
eggNOG:NOG241877 HSSP:P11632 EMBL:AY058722 RefSeq:NP_611553.1
UniGene:Dm.715 SMR:Q9W2K8 DIP:DIP-21305N IntAct:Q9W2K8
MINT:MINT-855426 EnsemblMetazoa:FBtr0071573 GeneID:37407
KEGG:dme:Dmel_CG9418 UCSC:CG9418-RA FlyBase:FBgn0026582
InParanoid:Q9W2K8 OMA:NRSTENE OrthoDB:EOG47M0DS GenomeRNAi:37407
NextBio:803476 Uniprot:Q9W2K8
Length = 376
Score = 123 (48.4 bits), Expect = 4.3e-07, P = 4.3e-07
Identities = 27/100 (27%), Positives = 49/100 (49%)
Query: 26 HLNSVTTAGLKQQTSQPLSIPEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSE 85
H +S + LK+ + +++ PK PL Y +F R ++ P +E T+++ E
Sbjct: 53 HSDSDIGSELKKLAQRRINVAGAPKMPLNGYVRFMNDRREELRREQPQRTALEHTRIIGE 112
Query: 86 EWKKIGEAEKKRLENEYAKEKEIYAQNVKKYHDELTPEAI 125
EW ++ E K AK+K IY + ++ + E PE +
Sbjct: 113 EWHQLPEERKLPYIEAAAKDKAIYQEQLQMFLKE-HPEIV 151
>WB|WBGene00022182 [details] [associations]
symbol:swsn-3 species:6239 "Caenorhabditis elegans"
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0040035 "hermaphrodite genitalia development"
evidence=IMP] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0010171 "body morphogenesis" evidence=IMP]
[GO:0006898 "receptor-mediated endocytosis" evidence=IMP]
InterPro:IPR009071 Pfam:PF00505 GO:GO:0009792 GO:GO:0006898
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0010171
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0040035 eggNOG:NOG291422 HOGENOM:HOG000230965 KO:K11651
GeneTree:ENSGT00390000003628 EMBL:FO081822 RefSeq:NP_497613.2
ProteinModelPortal:Q9BL39 SMR:Q9BL39 STRING:Q9BL39 PaxDb:Q9BL39
EnsemblMetazoa:Y71H2AM.17 GeneID:175393 KEGG:cel:CELE_Y71H2AM.17
UCSC:Y71H2AM.17 CTD:175393 WormBase:Y71H2AM.17 InParanoid:Q9BL39
OMA:IQPVDED NextBio:887970 Uniprot:Q9BL39
Length = 338
Score = 122 (48.0 bits), Expect = 4.5e-07, P = 4.5e-07
Identities = 19/71 (26%), Positives = 41/71 (57%)
Query: 46 PEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAKE 105
P+ P++PL PY ++ ++ K+ NP ++ ++ K++ + W + + EK ++EY E
Sbjct: 23 PKVPERPLQPYMRYSRKMWPKVRAENPEAQLWDIGKMIGKYWLDLPDGEKSHYQHEYELE 82
Query: 106 KEIYAQNVKKY 116
K Y + +K +
Sbjct: 83 KADYEKQMKHF 93
>UNIPROTKB|B4DFR4 [details] [associations]
symbol:SMARCE1 "Smarce1 variant 5" species:9606 "Homo
sapiens" [GO:0016514 "SWI/SNF complex" evidence=IEA] [GO:0071564
"npBAF complex" evidence=IEA] [GO:0071565 "nBAF complex"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] InterPro:IPR009071 Pfam:PF00505
GO:GO:0005634 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0071564 GO:GO:0016514 GO:GO:0071565
UniGene:Hs.740388 HGNC:HGNC:11109 HOVERGEN:HBG054558 EMBL:AC004585
EMBL:AC073508 EMBL:EU327019 EMBL:AK294218 IPI:IPI01015775
SMR:B4DFR4 STRING:B4DFR4 Ensembl:ENST00000544009
Ensembl:ENST00000578044 Uniprot:B4DFR4
Length = 341
Score = 122 (48.0 bits), Expect = 4.6e-07, P = 4.6e-07
Identities = 23/100 (23%), Positives = 49/100 (49%)
Query: 55 PYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAKEKEIYAQNVK 114
PY ++ ++ +++ NP++K+ E+ K++ W+ + + EK+ NEY EK Y +++K
Sbjct: 2 PYMRYSRKVWDQVKASNPDLKLWEIGKIIGGMWRDLTDEEKQEYLNEYEAEKIEYNESMK 61
Query: 115 KYHDELTPEAIEFLRXXXXXXXXXXXXXXXXXLFRETGKP 154
YH+ +P + ++ E G+P
Sbjct: 62 AYHN--SPAYLAYINAKSRAEAALEEESRQRQSRMEKGEP 99
>UNIPROTKB|E9PES6 [details] [associations]
symbol:HMGB3 "High mobility group protein B3" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 EMBL:AF003626 HGNC:HGNC:5004 IPI:IPI00411540
ProteinModelPortal:E9PES6 SMR:E9PES6 Ensembl:ENST00000430118
ArrayExpress:E9PES6 Bgee:E9PES6 Uniprot:E9PES6
Length = 153
Score = 115 (45.5 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 24/64 (37%), Positives = 35/64 (54%)
Query: 46 PEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAKE 105
P PK+P + +F F + R KI NP I I +V K + E W + ++EK+ + AK
Sbjct: 90 PNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLNDSEKQPYITKAAKL 149
Query: 106 KEIY 109
KE Y
Sbjct: 150 KEKY 153
Score = 95 (38.5 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 23/74 (31%), Positives = 39/74 (52%)
Query: 46 PEKPKKPLTPYFKFQGQIRNKIMERNPNIKI--IEVTKLVSEEWKKIGEAEKKRLENEYA 103
P+KPK ++ Y F R + ++NP + + E +K SE WK + EK + + E A
Sbjct: 6 PKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFD-EMA 64
Query: 104 KEKEI-YAQNVKKY 116
K ++ Y + +K Y
Sbjct: 65 KADKVRYDREMKDY 78
Score = 42 (19.8 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 149 RETGKPKKPGNSFYLFIKD 167
++ PK+P + F+LF +
Sbjct: 88 KDPNAPKRPPSGFFLFCSE 106
>FB|FBgn0004362 [details] [associations]
symbol:HmgD "High mobility group protein D" species:7227
"Drosophila melanogaster" [GO:0000790 "nuclear chromatin"
evidence=IDA] [GO:0006325 "chromatin organization" evidence=IDA]
[GO:0003680 "AT DNA binding" evidence=IDA] [GO:0008301 "DNA
binding, bending" evidence=IDA;NAS] [GO:0007517 "muscle organ
development" evidence=IMP] [GO:0048813 "dendrite morphogenesis"
evidence=IMP] InterPro:IPR009071 Pfam:PF00505 EMBL:AE013599
GO:GO:0005634 GO:GO:0005694 GO:GO:0008301 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0048813
GO:GO:0007517 GO:GO:0006325 GO:GO:0003680 eggNOG:NOG320947
EMBL:M77023 EMBL:X71138 EMBL:AM294353 EMBL:AM294354 EMBL:AM294355
EMBL:AM294356 EMBL:AM294357 EMBL:AM294358 EMBL:AM294359
EMBL:AM294360 EMBL:AM294361 EMBL:AM294362 EMBL:AM294363
EMBL:AY118333 PIR:A44382 RefSeq:NP_001163244.1 RefSeq:NP_726109.1
RefSeq:NP_726110.1 UniGene:Dm.7318 PDB:1E7J PDB:1HMA PDB:1QRV
PDB:3NM9 PDBsum:1E7J PDBsum:1HMA PDBsum:1QRV PDBsum:3NM9
ProteinModelPortal:Q05783 SMR:Q05783 DIP:DIP-22805N IntAct:Q05783
MINT:MINT-843935 STRING:Q05783 PaxDb:Q05783 PRIDE:Q05783
EnsemblMetazoa:FBtr0071708 EnsemblMetazoa:FBtr0071709
EnsemblMetazoa:FBtr0301410 GeneID:37481 KEGG:dme:Dmel_CG17950
CTD:37481 FlyBase:FBgn0004362 GeneTree:ENSGT00700000104547
InParanoid:Q05783 OMA:WRAMSEQ OrthoDB:EOG4TX98R PhylomeDB:Q05783
ChiTaRS:HmgD EvolutionaryTrace:Q05783 GenomeRNAi:37481
NextBio:803865 Bgee:Q05783 GermOnline:CG17950 Uniprot:Q05783
Length = 112
Score = 115 (45.5 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 25/70 (35%), Positives = 38/70 (54%)
Query: 47 EKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAKEK 106
+KPK+PL+ Y + R I NP IK+ EV K E W+ + +K E + AK K
Sbjct: 3 DKPKRPLSAYMLWLNSARESIKRENPGIKVTEVAKRGGELWRAM--KDKSEWEAKAAKAK 60
Query: 107 EIYAQNVKKY 116
+ Y + VK++
Sbjct: 61 DDYDRAVKEF 70
>UNIPROTKB|H0YNS8 [details] [associations]
symbol:HMG20A "High mobility group protein 20A"
species:9606 "Homo sapiens" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0045665
"negative regulation of neuron differentiation" evidence=IEA]
[GO:0046982 "protein heterodimerization activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
EMBL:AC090984 HGNC:HGNC:5001 ChiTaRS:HMG20A Ensembl:ENST00000559099
Bgee:H0YNS8 Uniprot:H0YNS8
Length = 156
Score = 115 (45.5 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 20/65 (30%), Positives = 36/65 (55%)
Query: 37 QQTSQPLSIPEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKK 96
++ +PL PK PLT Y +F + R ++ + P + E+T+++ EW K+ EK+
Sbjct: 91 RKRKKPLRDSNAPKSPLTGYVRFMNERREQLRAKRPEVPFPEITRMLGNEWSKLPPEEKQ 150
Query: 97 RLENE 101
R +E
Sbjct: 151 RYLDE 155
>DICTYBASE|DDB_G0270260 [details] [associations]
symbol:nhp6 "HMG1/2 (high mobility group)
box-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0006325 "chromatin organization"
evidence=ISS] [GO:0003682 "chromatin binding" evidence=ISS]
[GO:0000790 "nuclear chromatin" evidence=ISS] [GO:0006974 "response
to DNA damage stimulus" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0005694 "chromosome" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR009071 dictyBase:DDB_G0270260 Pfam:PF00505
EMBL:AAFI02000005 GenomeReviews:CM000150_GR GO:GO:0003677
GO:GO:0006281 GO:GO:0006357 GO:GO:0006351 GO:GO:0003682
eggNOG:COG5648 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0000790 GO:GO:0006325 HSSP:P63159
RefSeq:XP_646657.1 ProteinModelPortal:Q55C24 STRING:Q55C24
EnsemblProtists:DDB0216420 GeneID:8617629 KEGG:ddi:DDB_G0270260
OMA:ERVKNAN Uniprot:Q55C24
Length = 141
Score = 111 (44.1 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 26/97 (26%), Positives = 49/97 (50%)
Query: 30 VTTAGLKQ--QTSQPLSIPEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEW 87
V+ G K+ +T + P++ L+P+ F R+ I +PN E+ L+ +EW
Sbjct: 32 VSKKGKKEGKKTKKKPKDENAPRRYLSPFIFFSKDHRSVIKNSHPNCSFGEIGSLLGQEW 91
Query: 88 KKIGEAEKKRLENEYAKEKEIYAQNVKKYHDELTPEA 124
KI +KK+ E A++K+ + K Y ++L ++
Sbjct: 92 AKISAEDKKKYEKLAAEDKKRWELEKKNYDEKLKTQS 128
>SGD|S000006256 [details] [associations]
symbol:NHP6A "High-mobility group (HMG) protein, binds to and
remodels nucleosomes" species:4932 "Saccharomyces cerevisiae"
[GO:0032301 "MutSalpha complex" evidence=IDA] [GO:0006974 "response
to DNA damage stimulus" evidence=IEA] [GO:0070898 "RNA polymerase
III transcriptional preinitiation complex assembly"
evidence=IGI;IDA] [GO:0006338 "chromatin remodeling" evidence=IGI]
[GO:0034724 "DNA replication-independent nucleosome organization"
evidence=IDA] [GO:0051123 "RNA polymerase II transcriptional
preinitiation complex assembly" evidence=IDA] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0005694
"chromosome" evidence=IEA] [GO:0008301 "DNA binding, bending"
evidence=IDA] [GO:0031491 "nucleosome binding" evidence=IDA]
[GO:0043565 "sequence-specific DNA binding" evidence=IDA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IC] InterPro:IPR009071 SGD:S000006256 Pfam:PF00505
GO:GO:0005634 GO:GO:0005694 GO:GO:0006355 GO:GO:0043565
GO:GO:0006338 eggNOG:COG5648 GO:GO:0008301 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0006298
EMBL:Z71255 EMBL:BK006949 GO:GO:0031491 EMBL:Z49219
GeneTree:ENSGT00560000076898 HOGENOM:HOG000197861 GO:GO:0051123
EMBL:M95912 EMBL:X15317 EMBL:AY693230 PIR:A35072 RefSeq:NP_015377.1
PDB:1CG7 PDB:1J5N PDB:1LWM PDBsum:1CG7 PDBsum:1J5N PDBsum:1LWM
DisProt:DP00432 ProteinModelPortal:P11632 SMR:P11632 IntAct:P11632
MINT:MINT-2785986 STRING:P11632 PaxDb:P11632 PeptideAtlas:P11632
EnsemblFungi:YPR052C GeneID:856165 KEGG:sce:YPR052C CYGD:YPR052c
OMA:FFANDNR OrthoDB:EOG4S7P0P EvolutionaryTrace:P11632
NextBio:981313 Genevestigator:P11632 GermOnline:YPR052C
GO:GO:0034724 GO:GO:0070898 Uniprot:P11632
Length = 93
Score = 111 (44.1 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 26/91 (28%), Positives = 46/91 (50%)
Query: 30 VTTAGLKQQTSQPLSIPEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKK 89
VT K++T++ P PK+ L+ Y F + R+ + NP+I +V K + E+WK
Sbjct: 2 VTPREPKKRTTRKKKDPNAPKRALSAYMFFANENRDIVRSENPDITFGQVGKKLGEKWKA 61
Query: 90 IGEAEKKRLENEYAKEKEIYAQNVKKYHDEL 120
+ EK+ E + +K+ Y + Y+ L
Sbjct: 62 LTPEEKQPYEAKAQADKKRYESEKELYNATL 92
>UNIPROTKB|D6R9A6 [details] [associations]
symbol:HMGB2 "High mobility group protein B2" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0007289 "spermatid nucleus
differentiation" evidence=IEA] [GO:0008584 "male gonad development"
evidence=IEA] [GO:0019904 "protein domain specific binding"
evidence=IEA] [GO:0043388 "positive regulation of DNA binding"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0048545
"response to steroid hormone stimulus" evidence=IEA]
InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
GO:GO:0005634 GO:GO:0003677 GO:GO:0045944 GO:GO:0048545
GO:GO:0008584 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0007289 GO:GO:0043388 Pfam:PF09011
HOGENOM:HOG000197861 HGNC:HGNC:5000 ChiTaRS:HMGB2 EMBL:AC097534
IPI:IPI00967671 ProteinModelPortal:D6R9A6 SMR:D6R9A6
Ensembl:ENST00000506267 ArrayExpress:D6R9A6 Bgee:D6R9A6
Uniprot:D6R9A6
Length = 134
Score = 92 (37.4 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 20/73 (27%), Positives = 36/73 (49%)
Query: 46 PEKPKKPLTPYFKFQGQIRNKIMERNPN--IKIIEVTKLVSEEWKKIGEAEKKRLENEYA 103
P KP+ ++ Y F R + +++P+ + E +K SE WK + EK + E+
Sbjct: 6 PNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMAK 65
Query: 104 KEKEIYAQNVKKY 116
+K Y + +K Y
Sbjct: 66 SDKARYDREMKNY 78
Score = 48 (22.0 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 10/32 (31%), Positives = 19/32 (59%)
Query: 149 RETGKPKKPGNSFYLFIKDNIDK--KEYEGKS 178
++ PK+P ++F+LF ++ K E+ G S
Sbjct: 90 KDPNAPKRPPSAFFLFCSEHRPKIKSEHPGLS 121
>UNIPROTKB|P0CB47 [details] [associations]
symbol:UBTFL1 "Putative upstream-binding factor 1-like
protein 1" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0007275 "multicellular organismal development"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] InterPro:IPR009071 Pfam:PF00505
GO:GO:0007275 GO:GO:0005634 GO:GO:0005737 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
HOGENOM:HOG000232068 EMBL:AP000827 IPI:IPI00921220
RefSeq:NP_001137447.1 UniGene:Hs.719885 ProteinModelPortal:P0CB47
SMR:P0CB47 STRING:P0CB47 PhosphoSite:P0CB47 DMDM:263545802
PaxDb:P0CB47 PRIDE:P0CB47 GeneID:642623 KEGG:hsa:642623
UCSC:uc010rub.2 CTD:642623 GeneCards:GC11P089819 HGNC:HGNC:14533
MIM:613696 neXtProt:NX_P0CB47 PharmGKB:PA164727456 eggNOG:NOG260929
OrthoDB:EOG47H5Q8 GenomeRNAi:642623 NextBio:114002 Uniprot:P0CB47
Length = 393
Score = 112 (44.5 bits), Expect = 2.1e-06, Sum P(2) = 2.1e-06
Identities = 20/81 (24%), Positives = 51/81 (62%)
Query: 46 PEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAKE 105
P+ PK+PLT Y +F + + + P ++ E+TK++S++++++ E K++ ++ KE
Sbjct: 97 PDFPKRPLTAYNRFFKESWPQYSQMYPGMRSQELTKILSKKYRELPEQMKQKYIQDFRKE 156
Query: 106 KEIYAQNVKKYHDELTPEAIE 126
K+ + + + ++ +E P+ ++
Sbjct: 157 KQEFEEKLARFREE-HPDLVQ 176
Score = 44 (20.5 bits), Expect = 2.1e-06, Sum P(2) = 2.1e-06
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 152 GKPKKPG-NSFYLFIKDNIDKKEYE 175
G+P+KP N ++ F +D+ KE +
Sbjct: 219 GEPQKPPMNGYHKFHQDSWSSKEMQ 243
>FB|FBgn0010228 [details] [associations]
symbol:HmgZ "HMG protein Z" species:7227 "Drosophila
melanogaster" [GO:0003677 "DNA binding" evidence=NAS] [GO:0005634
"nucleus" evidence=NAS] InterPro:IPR009071 Pfam:PF00505
EMBL:AE013599 GO:GO:0005634 GO:GO:0005694 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
eggNOG:NOG320947 GeneTree:ENSGT00700000104547 EMBL:X71139
EMBL:AY113439 PIR:S41765 RefSeq:NP_726106.1 RefSeq:NP_726107.1
UniGene:Dm.20604 ProteinModelPortal:Q06943 SMR:Q06943 PaxDb:Q06943
PRIDE:Q06943 EnsemblMetazoa:FBtr0071673 EnsemblMetazoa:FBtr0071674
GeneID:37480 KEGG:dme:Dmel_CG17921 CTD:37480 FlyBase:FBgn0010228
InParanoid:Q06943 OMA:EANGGTD OrthoDB:EOG4W0VWS PhylomeDB:Q06943
ChiTaRS:HmgZ GenomeRNAi:37480 NextBio:803858 Bgee:Q06943
GermOnline:CG17921 Uniprot:Q06943
Length = 111
Score = 109 (43.4 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 23/70 (32%), Positives = 39/70 (55%)
Query: 47 EKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAKEK 106
++PK+PL+ Y + + R +I + NP K+ ++ K E W+ G +K E + K K
Sbjct: 4 DRPKRPLSAYMLWLNETREQIKKDNPGSKVTDIAKRGGELWR--GLKDKTEWEQKAIKMK 61
Query: 107 EIYAQNVKKY 116
E Y + VK+Y
Sbjct: 62 EEYNKAVKEY 71
>ZFIN|ZDB-GENE-041008-209 [details] [associations]
symbol:ssrp1b "structure specific recognition
protein 1b" species:7955 "Danio rerio" [GO:0005634 "nucleus"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR009071
InterPro:IPR000969 PRINTS:PR00887 Pfam:PF00505 Pfam:PF03531
ZFIN:ZDB-GENE-041008-209 GO:GO:0005634 Gene3D:2.30.29.30
InterPro:IPR011993 GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GeneTree:ENSGT00700000104547
InterPro:IPR013719 Pfam:PF08512 InterPro:IPR024954 EMBL:BX511158
IPI:IPI00502576 PRIDE:F6NLJ7 Ensembl:ENSDART00000131296 Bgee:F6NLJ7
Uniprot:F6NLJ7
Length = 703
Score = 120 (47.3 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 20/70 (28%), Positives = 42/70 (60%)
Query: 49 PKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAKEKEI 108
PK+P++ Y + R++I NP I I E++K E WK++G+ +K+ + + + K+
Sbjct: 543 PKRPMSAYMLWLNSSRDRIKSENPGISITEISKKAGEMWKQLGKDKKEEWDGKAEEAKKE 602
Query: 109 YAQNVKKYHD 118
Y + +++Y +
Sbjct: 603 YDRAMREYRE 612
>SGD|S000002157 [details] [associations]
symbol:NHP6B "High-mobility group (HMG) protein, binds to and
remodels nucleosomes" species:4932 "Saccharomyces cerevisiae"
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006281
"DNA repair" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006974 "response
to DNA damage stimulus" evidence=IEA] [GO:0006338 "chromatin
remodeling" evidence=IGI] [GO:0070898 "RNA polymerase III
transcriptional preinitiation complex assembly" evidence=IGI;IDA]
[GO:0008301 "DNA binding, bending" evidence=IDA] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=IGI]
[GO:0043565 "sequence-specific DNA binding" evidence=IDA]
[GO:0031491 "nucleosome binding" evidence=ISS] InterPro:IPR009071
SGD:S000002157 Pfam:PF00505 GO:GO:0005634 GO:GO:0005694
GO:GO:0006355 GO:GO:0043565 GO:GO:0006281 EMBL:BK006936
GO:GO:0006338 eggNOG:COG5648 GO:GO:0008301 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0006366
EMBL:X78993 GO:GO:0031491 GeneTree:ENSGT00560000076898
HOGENOM:HOG000197861 OMA:LANPNNK OrthoDB:EOG4S7P0P GO:GO:0070898
EMBL:X15318 EMBL:Z35957 EMBL:Z35959 EMBL:AY558566 EMBL:EF123125
PIR:S78076 RefSeq:NP_009647.2 ProteinModelPortal:P11633 SMR:P11633
DIP:DIP-6748N IntAct:P11633 MINT:MINT-615533 STRING:P11633
PaxDb:P11633 PeptideAtlas:P11633 EnsemblFungi:YBR089C-A
GeneID:852386 KEGG:sce:YBR089C-A CYGD:YBR089c-a NextBio:971195
Genevestigator:P11633 GermOnline:YBR089C-A Uniprot:P11633
Length = 99
Score = 108 (43.1 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 21/82 (25%), Positives = 44/82 (53%)
Query: 36 KQQTSQPLSIPEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEK 95
K++T++ P PK+ L+ Y F + R+ + NP++ +V +++ E WK + EK
Sbjct: 14 KKRTTRRKKDPNAPKRGLSAYMFFANENRDIVRSENPDVTFGQVGRILGERWKALTAEEK 73
Query: 96 KRLENEYAKEKEIYAQNVKKYH 117
+ E++ +K+ Y + Y+
Sbjct: 74 QPYESKAQADKKRYESEKELYN 95
>GENEDB_PFALCIPARUM|PFL0145c [details] [associations]
symbol:PFL0145c "high mobility group protein"
species:5833 "Plasmodium falciparum" [GO:0005634 "nucleus"
evidence=ISS] [GO:0003682 "chromatin binding" evidence=ISS]
[GO:0000785 "chromatin" evidence=ISS] InterPro:IPR009071
Pfam:PF00505 GO:GO:0005634 GO:GO:0000785 GO:GO:0003682
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
EMBL:AE014188 HOGENOM:HOG000197861 HSSP:P11632 OMA:FFANDNR
GenomeReviews:AE014188_GR RefSeq:XP_001350438.1
ProteinModelPortal:Q8I616 EnsemblProtists:PFL0145c:mRNA
GeneID:811082 KEGG:pfa:PFL0145c EuPathDB:PlasmoDB:PF3D7_1202900
ProtClustDB:PTZ00199 Uniprot:Q8I616
Length = 97
Score = 107 (42.7 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 22/73 (30%), Positives = 38/73 (52%)
Query: 46 PEKPKKPLTPYFKFQGQIRNKIMERNPNIK--IIEVTKLVSEEWKKIGEAEKKRLENEYA 103
P PK+ L+ Y F + R +I+ + P + + V K++ E W K+GE EK E +
Sbjct: 18 PHAPKRSLSAYMFFAKEKRAEIISKQPELSKDVATVGKMIGEAWNKLGEKEKAPFEKKAQ 77
Query: 104 KEKEIYAQNVKKY 116
++K Y + +Y
Sbjct: 78 EDKLRYEKEKAEY 90
>UNIPROTKB|Q8I616 [details] [associations]
symbol:HMGB1 "High mobility group protein" species:36329
"Plasmodium falciparum 3D7" [GO:0000785 "chromatin" evidence=ISS]
[GO:0003682 "chromatin binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634
GO:GO:0000785 GO:GO:0003682 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 EMBL:AE014188 HOGENOM:HOG000197861
HSSP:P11632 OMA:FFANDNR GenomeReviews:AE014188_GR
RefSeq:XP_001350438.1 ProteinModelPortal:Q8I616
EnsemblProtists:PFL0145c:mRNA GeneID:811082 KEGG:pfa:PFL0145c
EuPathDB:PlasmoDB:PF3D7_1202900 ProtClustDB:PTZ00199 Uniprot:Q8I616
Length = 97
Score = 107 (42.7 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 22/73 (30%), Positives = 38/73 (52%)
Query: 46 PEKPKKPLTPYFKFQGQIRNKIMERNPNIK--IIEVTKLVSEEWKKIGEAEKKRLENEYA 103
P PK+ L+ Y F + R +I+ + P + + V K++ E W K+GE EK E +
Sbjct: 18 PHAPKRSLSAYMFFAKEKRAEIISKQPELSKDVATVGKMIGEAWNKLGEKEKAPFEKKAQ 77
Query: 104 KEKEIYAQNVKKY 116
++K Y + +Y
Sbjct: 78 EDKLRYEKEKAEY 90
>UNIPROTKB|G4MS97 [details] [associations]
symbol:MGG_04489 "Non-histone chromosomal protein 6"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR009071 Pfam:PF00505
GO:GO:0043565 GO:GO:0006338 GO:GO:0008301 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 EMBL:CM001231
GO:GO:0031491 GO:GO:0051123 GO:GO:0032301 GO:GO:0034724
GO:GO:0070898 RefSeq:XP_003710967.1 ProteinModelPortal:G4MS97
SMR:G4MS97 EnsemblFungi:MGG_04489T0 GeneID:2678075
KEGG:mgr:MGG_04489 Uniprot:G4MS97
Length = 101
Score = 106 (42.4 bits), Expect = 4.3e-06, P = 4.3e-06
Identities = 23/93 (24%), Positives = 43/93 (46%)
Query: 24 MPHLNSVTTAGLKQQTSQPLSIPEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLV 83
MP + T K + + P PK+ L+ Y F + R+ + E NP + +V K++
Sbjct: 1 MP--KAATKKSAKPEKRRAKKDPMAPKRGLSAYMFFANEQRDNVREENPGVTFGQVGKIL 58
Query: 84 SEEWKKIGEAEKKRLENEYAKEKEIYAQNVKKY 116
E WK + + ++ + + A +K+ Y Y
Sbjct: 59 GERWKALSDKQRAPYDAKAAADKKRYEDEKAAY 91
>UNIPROTKB|Q5T7C4 [details] [associations]
symbol:HMGB1 "High mobility group protein B1" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 HOVERGEN:HBG009000 EMBL:AL353648 UniGene:Hs.434102
UniGene:Hs.593339 UniGene:Hs.596078 UniGene:Hs.741195
HGNC:HGNC:4983 ChiTaRS:HMGB1 EMBL:AL138681 IPI:IPI00644653
SMR:Q5T7C4 Ensembl:ENST00000326004 Ensembl:ENST00000399489
UCSC:uc001usv.3 Uniprot:Q5T7C4
Length = 158
Score = 110 (43.8 bits), Expect = 5.1e-06, P = 5.1e-06
Identities = 24/74 (32%), Positives = 37/74 (50%)
Query: 36 KQQTSQPLSIPEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEK 95
K +T + P PK+P + +F F + R KI +P + I +V K + E W +K
Sbjct: 82 KGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDK 141
Query: 96 KRLENEYAKEKEIY 109
+ E + AK KE Y
Sbjct: 142 QPYEKKAAKLKEKY 155
Score = 89 (36.4 bits), Expect = 5.1e-05, Sum P(2) = 5.1e-05
Identities = 20/73 (27%), Positives = 37/73 (50%)
Query: 46 PEKPKKPLTPYFKFQGQIRNKIMERNPN--IKIIEVTKLVSEEWKKIGEAEKKRLENEYA 103
P+KP+ ++ Y F R + +++P+ + E +K SE WK + EK + E+
Sbjct: 6 PKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAK 65
Query: 104 KEKEIYAQNVKKY 116
+K Y + +K Y
Sbjct: 66 ADKARYEREMKTY 78
Score = 49 (22.3 bits), Expect = 5.1e-05, Sum P(2) = 5.1e-05
Identities = 7/20 (35%), Positives = 14/20 (70%)
Query: 148 FRETGKPKKPGNSFYLFIKD 167
F++ PK+P ++F+LF +
Sbjct: 89 FKDPNAPKRPPSAFFLFCSE 108
>TAIR|locus:2128003 [details] [associations]
symbol:HMGB5 "high mobility group B5" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM;IDA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0000785 "chromatin" evidence=TAS]
[GO:0003682 "chromatin binding" evidence=TAS] [GO:0006333
"chromatin assembly or disassembly" evidence=RCA;TAS] [GO:0030527
"structural constituent of chromatin" evidence=TAS] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0003677 "DNA binding"
evidence=ISS;IDA] InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634
GO:GO:0005737 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0003677
GO:GO:0000785 GO:GO:0003700 GO:GO:0003682 eggNOG:COG5648
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0006333 EMBL:AL161587 EMBL:AL031135 HOGENOM:HOG000197860
GO:GO:0030527 HSSP:P11632 EMBL:Y14075 EMBL:AK317173 EMBL:BT025597
EMBL:AY085615 IPI:IPI00535971 PIR:T04662 RefSeq:NP_195282.1
UniGene:At.482 ProteinModelPortal:O49597 SMR:O49597 STRING:O49597
PaxDb:O49597 PRIDE:O49597 EnsemblPlants:AT4G35570.1 GeneID:829709
KEGG:ath:AT4G35570 TAIR:At4g35570 InParanoid:O49597 OMA:YNMELAN
PhylomeDB:O49597 ProtClustDB:CLSN2916185 Genevestigator:O49597
Uniprot:O49597
Length = 125
Score = 105 (42.0 bits), Expect = 5.5e-06, P = 5.5e-06
Identities = 23/76 (30%), Positives = 40/76 (52%)
Query: 46 PEKPKKPLTPYFKFQGQIRNKIMERNPNIKII-EVTKLVSEEWKKIGEAEKKRLENEYAK 104
P +PKKP +P+F F R + NP+ K + V + ++WK + E E+ +
Sbjct: 31 PNRPKKPPSPFFVFLDDFRKEFNLANPDNKSVGNVGRAAGKKWKTMTEEERAPFVAKSQS 90
Query: 105 EKEIYAQNVKKYHDEL 120
+K YA +++Y+ EL
Sbjct: 91 KKTEYAVTMQQYNMEL 106
>RGD|1587112 [details] [associations]
symbol:Hmg1l1 "high-mobility group (nonhistone chromosomal)
protein 1-like 1" species:10116 "Rattus norvegicus" [GO:0003674
"molecular_function" evidence=ND] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 RGD:1587112
GO:GO:0005634 GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 Pfam:PF09011 OrthoDB:EOG4KWJV1
GeneTree:ENSGT00560000076717 IPI:IPI00564933 RefSeq:XP_003748829.1
RefSeq:XP_003753270.1 Ensembl:ENSRNOT00000047765 GeneID:100909581
KEGG:rno:100909581 OMA:KEYHSAR Uniprot:D3ZL49
Length = 215
Score = 115 (45.5 bits), Expect = 6.0e-06, P = 6.0e-06
Identities = 26/89 (29%), Positives = 43/89 (48%)
Query: 36 KQQTSQPLSIPEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEK 95
K +T + P PK+P + +F F + R KI +P + I +V K + E W +K
Sbjct: 82 KGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWTNTAADDK 141
Query: 96 KRLENEYAKEKEIYAQNVKKYHDELTPEA 124
+ AK KE Y +++ Y + P+A
Sbjct: 142 QPYGKMAAKLKEKYEKDIAAYRAKGKPDA 170
Score = 88 (36.0 bits), Expect = 0.00041, Sum P(2) = 0.00041
Identities = 20/73 (27%), Positives = 37/73 (50%)
Query: 46 PEKPKKPLTPYFKFQGQIRNKIMERNPN--IKIIEVTKLVSEEWKKIGEAEKKRLENEYA 103
P+KP+ ++ Y F R + +++P+ + E +K SE WK + EK + E+
Sbjct: 6 PKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKCEDMAK 65
Query: 104 KEKEIYAQNVKKY 116
+K Y + +K Y
Sbjct: 66 ADKARYEREMKTY 78
Score = 49 (22.3 bits), Expect = 0.00041, Sum P(2) = 0.00041
Identities = 7/20 (35%), Positives = 14/20 (70%)
Query: 148 FRETGKPKKPGNSFYLFIKD 167
F++ PK+P ++F+LF +
Sbjct: 89 FKDPNAPKRPPSAFFLFCSE 108
>RGD|1560584 [details] [associations]
symbol:RGD1560584 "similar to High mobility group protein 1
(HMG-1)" species:10116 "Rattus norvegicus" [GO:0003674
"molecular_function" evidence=ND] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 Pfam:PF09011 OrthoDB:EOG4KWJV1
GeneTree:ENSGT00560000076717 IPI:IPI00559222
Ensembl:ENSRNOT00000049438 Uniprot:D3ZIU9
Length = 204
Score = 114 (45.2 bits), Expect = 7.2e-06, P = 7.2e-06
Identities = 26/89 (29%), Positives = 44/89 (49%)
Query: 36 KQQTSQPLSIPEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEK 95
K +T + P K+P + +F F + R KI +P + I +V K + E W +K
Sbjct: 82 KGETKKKFKDPNALKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWTNTAVDDK 141
Query: 96 KRLENEYAKEKEIYAQNVKKYHDELTPEA 124
+ E + AK KE Y +++ Y + P+A
Sbjct: 142 QPCEKKAAKLKEKYEKDIAAYRAKGKPDA 170
>MGI|MGI:3588290 [details] [associations]
symbol:Ubtfl1 "upstream binding transcription factor, RNA
polymerase I-like 1" species:10090 "Mus musculus" [GO:0001832
"blastocyst growth" evidence=IMP] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0007566 "embryo implantation" evidence=IMP] [GO:0010468
"regulation of gene expression" evidence=IMP] InterPro:IPR009071
MGI:MGI:3588290 Pfam:PF00505 GO:GO:0005634 GO:GO:0005737
GO:GO:0003677 EMBL:CH466522 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0010468 GO:GO:0007566
GO:GO:0001832 HOGENOM:HOG000232068 GeneTree:ENSGT00530000063934
CTD:642623 eggNOG:NOG260929 OrthoDB:EOG47H5Q8 EMBL:AK139937
EMBL:AK163257 EMBL:BC139141 EMBL:BC145822 IPI:IPI00606875
RefSeq:NP_001028965.1 UniGene:Mm.380138 ProteinModelPortal:Q3USZ2
SMR:Q3USZ2 STRING:Q3USZ2 PhosphoSite:Q3USZ2 PRIDE:Q3USZ2
Ensembl:ENSMUST00000098973 Ensembl:ENSMUST00000164441
Ensembl:ENSMUST00000169398 GeneID:546118 KEGG:mmu:546118
UCSC:uc009ogq.1 InParanoid:Q3TQX0 OMA:LTAYIRF NextBio:413355
Bgee:Q3USZ2 Uniprot:Q3USZ2
Length = 394
Score = 117 (46.2 bits), Expect = 8.3e-06, P = 8.3e-06
Identities = 20/71 (28%), Positives = 45/71 (63%)
Query: 46 PEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAKE 105
P++PK+PLT Y +F + R K + P ++TK+++E+++++ K+R ++ KE
Sbjct: 98 PDRPKRPLTAYLRFYKEQRAKYCQMYPKYSNAQLTKILAEKYRQLPAEIKQRYIMDFKKE 157
Query: 106 KEIYAQNVKKY 116
KE + + ++++
Sbjct: 158 KEDFQKKMRQF 168
>RGD|1563188 [details] [associations]
symbol:Ubtfl1 "upstream binding transcription factor, RNA
polymerase I-like 1" species:10116 "Rattus norvegicus" [GO:0001832
"blastocyst growth" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0007566
"embryo implantation" evidence=ISO] [GO:0010468 "regulation of gene
expression" evidence=ISO] InterPro:IPR009071 Pfam:PF00505
RGD:1563188 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 OrthoDB:EOG47H5Q8 IPI:IPI00362313
Ensembl:ENSRNOT00000061352 UCSC:RGD:1563188 Uniprot:D3ZM34
Length = 398
Score = 117 (46.2 bits), Expect = 8.5e-06, P = 8.5e-06
Identities = 22/75 (29%), Positives = 45/75 (60%)
Query: 46 PEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAKE 105
P++PK+PLT Y +F + R K + P ++TK++++E++++ K+R ++ KE
Sbjct: 97 PDRPKRPLTAYLRFYREHRAKYCQMYPRYTNAQLTKVLAKEYRQLPAEAKERYVQDFKKE 156
Query: 106 KEIYAQNV---KKYH 117
K+ + + + KK H
Sbjct: 157 KQAFQEKMAQLKKNH 171
>UNIPROTKB|F1M1H9 [details] [associations]
symbol:F1M1H9 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 Pfam:PF09011 IPI:IPI00949462
Ensembl:ENSRNOT00000052187 Uniprot:F1M1H9
Length = 179
Score = 112 (44.5 bits), Expect = 8.9e-06, P = 8.9e-06
Identities = 25/89 (28%), Positives = 43/89 (48%)
Query: 36 KQQTSQPLSIPEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEK 95
K +T + P+ P++P +F F + KI +P + I +V K + E W +K
Sbjct: 83 KGETKKKFKDPDAPRRPPLAFFLFCSEYHPKIKGEHPGLSIGDVAKKLGEMWNNTAADDK 142
Query: 96 KRLENEYAKEKEIYAQNVKKYHDELTPEA 124
+ E + AK KE Y ++ Y + P+A
Sbjct: 143 QPCEKKAAKLKEKYEKDNAAYRAKGKPDA 171
>ZFIN|ZDB-GENE-031118-9 [details] [associations]
symbol:ssrp1a "structure specific recognition protein
1a" species:7955 "Danio rerio" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR009071 InterPro:IPR000969 PRINTS:PR00887 Pfam:PF00505
Pfam:PF03531 ZFIN:ZDB-GENE-031118-9 GO:GO:0005634 Gene3D:2.30.29.30
InterPro:IPR011993 GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GeneTree:ENSGT00700000104547
InterPro:IPR013719 Pfam:PF08512 InterPro:IPR024954 EMBL:BX510356
IPI:IPI00487997 Ensembl:ENSDART00000137795 ArrayExpress:F1QEB4
Bgee:F1QEB4 Uniprot:F1QEB4
Length = 705
Score = 118 (46.6 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 21/70 (30%), Positives = 40/70 (57%)
Query: 49 PKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAKEKEI 108
PK+P++ Y + R +I NP I I E++K E WK++G+ +K+ + + + K
Sbjct: 546 PKRPMSAYMLWLNGNRERIKSENPGISITEISKKAGEMWKQLGKDKKEEWDKKAEEAKRQ 605
Query: 109 YAQNVKKYHD 118
Y + +K+Y +
Sbjct: 606 YEKAMKEYKE 615
>MGI|MGI:1916567 [details] [associations]
symbol:Hmgb4 "high-mobility group box 4" species:10090 "Mus
musculus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005694 "chromosome" evidence=IEA]
InterPro:IPR009071 PROSITE:PS00353 MGI:MGI:1916567 Pfam:PF00505
GO:GO:0005634 GO:GO:0005694 GO:GO:0003677 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 Pfam:PF09011
GeneTree:ENSGT00560000076898 HOGENOM:HOG000197861
HOVERGEN:HBG009000 CTD:127540 KO:K11297 OMA:RYQEEMM
OrthoDB:EOG4255TS HSSP:P17741 EMBL:AK005588 EMBL:BC061030
IPI:IPI00118961 RefSeq:NP_081312.2 UniGene:Mm.331893
ProteinModelPortal:Q6P8W9 SMR:Q6P8W9 PhosphoSite:Q6P8W9
PRIDE:Q6P8W9 Ensembl:ENSMUST00000053830 GeneID:69317 KEGG:mmu:69317
eggNOG:NOG288392 InParanoid:Q6P8W9 NextBio:329122 Bgee:Q6P8W9
CleanEx:MM_HMGB4 Genevestigator:Q6P8W9 Uniprot:Q6P8W9
Length = 181
Score = 95 (38.5 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 22/71 (30%), Positives = 35/71 (49%)
Query: 48 KPKKPLTPYFKFQGQIRNKIMERNPN--IKIIEVTKLVSEEWKKIGEAEKKRLENEYAKE 105
+PK ++ Y F RNK E+ PN + E ++ SE+W+ I + EK + E +
Sbjct: 8 RPKVNVSSYIHFMLNFRNKFKEQQPNTYLGFKEFSRKCSEKWRSISKHEKAKYEALAELD 67
Query: 106 KEIYAQNVKKY 116
K Y Q + Y
Sbjct: 68 KARYQQEMMNY 78
Score = 49 (22.3 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 149 RETGKPKKPGNSFYLFIKDN 168
R+ P+KP +SF LF +D+
Sbjct: 88 RDPKAPRKPPSSFLLFSRDH 107
>GENEDB_PFALCIPARUM|MAL8P1.72 [details] [associations]
symbol:MAL8P1.72 "high mobility group protein,
putative" species:5833 "Plasmodium falciparum" [GO:0006359
"regulation of transcription from RNA polymerase III promoter"
evidence=ISS] InterPro:IPR009071 Pfam:PF00505 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0006359
EMBL:AL844507 HOGENOM:HOG000197861 HSSP:P11632
GenomeReviews:AL844507_GR ProtClustDB:PTZ00199
RefSeq:XP_001349346.1 ProteinModelPortal:Q8IB14 IntAct:Q8IB14
MINT:MINT-1562034 EnsemblProtists:MAL8P1.72:mRNA GeneID:2655422
KEGG:pfa:MAL8P1.72 EuPathDB:PlasmoDB:PF3D7_0817900 OMA:SAYMFYV
Uniprot:Q8IB14
Length = 99
Score = 100 (40.3 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 22/84 (26%), Positives = 44/84 (52%)
Query: 35 LKQQTSQPLSIPEKPKKPLTPYFKFQGQIRNKIMERNPNIK--IIEVTKLVSEEWKKIGE 92
LK+Q + P PK+ L+ Y + R +I++ P + + +V KL+ E W ++
Sbjct: 10 LKKQNKKKKKDPLAPKRALSAYMFYVKDKRLEIIKEKPELAKDVAQVGKLIGEAWGQLSP 69
Query: 93 AEKKRLENEYAKEKEIYAQNVKKY 116
A+K E + +K Y++ +++Y
Sbjct: 70 AQKAPYEKKAQLDKVRYSKEIEEY 93
>UNIPROTKB|Q8IB14 [details] [associations]
symbol:PfHMGB2 "High mobility group protein" species:36329
"Plasmodium falciparum 3D7" [GO:0006359 "regulation of
transcription from RNA polymerase III promoter" evidence=ISS]
InterPro:IPR009071 Pfam:PF00505 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0006359 EMBL:AL844507
HOGENOM:HOG000197861 HSSP:P11632 GenomeReviews:AL844507_GR
ProtClustDB:PTZ00199 RefSeq:XP_001349346.1
ProteinModelPortal:Q8IB14 IntAct:Q8IB14 MINT:MINT-1562034
EnsemblProtists:MAL8P1.72:mRNA GeneID:2655422 KEGG:pfa:MAL8P1.72
EuPathDB:PlasmoDB:PF3D7_0817900 OMA:SAYMFYV Uniprot:Q8IB14
Length = 99
Score = 100 (40.3 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 22/84 (26%), Positives = 44/84 (52%)
Query: 35 LKQQTSQPLSIPEKPKKPLTPYFKFQGQIRNKIMERNPNIK--IIEVTKLVSEEWKKIGE 92
LK+Q + P PK+ L+ Y + R +I++ P + + +V KL+ E W ++
Sbjct: 10 LKKQNKKKKKDPLAPKRALSAYMFYVKDKRLEIIKEKPELAKDVAQVGKLIGEAWGQLSP 69
Query: 93 AEKKRLENEYAKEKEIYAQNVKKY 116
A+K E + +K Y++ +++Y
Sbjct: 70 AQKAPYEKKAQLDKVRYSKEIEEY 93
>UNIPROTKB|Q9W602 [details] [associations]
symbol:ssrp1 "FACT complex subunit SSRP1" species:8355
"Xenopus laevis" [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR009071 InterPro:IPR000969 PRINTS:PR00887 Pfam:PF00505
Pfam:PF03531 GO:GO:0005694 GO:GO:0005730 GO:GO:0006355
Gene3D:2.30.29.30 InterPro:IPR011993 GO:GO:0003677 GO:GO:0006260
GO:GO:0006281 GO:GO:0006351 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 InterPro:IPR013719 Pfam:PF08512
KO:K09272 InterPro:IPR024954 CTD:6749 HOVERGEN:HBG002932
EMBL:AB004793 EMBL:BC082613 RefSeq:NP_001084164.1 UniGene:Xl.336
ProteinModelPortal:Q9W602 PRIDE:Q9W602 GeneID:399344
KEGG:xla:399344 Xenbase:XB-GENE-994299 Uniprot:Q9W602
Length = 693
Score = 117 (46.2 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 24/89 (26%), Positives = 43/89 (48%)
Query: 36 KQQTSQPLSIPEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEK 95
K+ ++ P PK+P++ Y + R KI NP I I +++K E WK + +K
Sbjct: 528 KKPEAKKTKDPGAPKRPMSAYMLWLNASREKIKSENPGISITDLSKKAGEIWKNMSRDKK 587
Query: 96 KRLENEYAKEKEIYAQNVKKYHDELTPEA 124
+ + + K Y + +K+Y+ EA
Sbjct: 588 EEWDRRAEEAKRDYEKAMKEYNTSAPTEA 616
>UNIPROTKB|E1BIF8 [details] [associations]
symbol:E1BIF8 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 GeneTree:ENSGT00560000076717 EMBL:DAAA02073284
IPI:IPI00728960 Ensembl:ENSBTAT00000006714 OMA:RAISEMW
Uniprot:E1BIF8
Length = 194
Score = 111 (44.1 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 24/74 (32%), Positives = 41/74 (55%)
Query: 46 PEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAKE 105
P PK+P + +F F + ++I NP I I +V K + E W + +++K+ N+ AK
Sbjct: 87 PNAPKRPPSGFFLFFSEFCSEIKSTNPGISIGDVAKKLGEMWNNLSDSKKQLYVNKDAKL 146
Query: 106 KEIYAQNVKKYHDE 119
K+ Y ++V Y E
Sbjct: 147 KK-YEKDVADYKGE 159
>UNIPROTKB|D4A535 [details] [associations]
symbol:D4A535 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 Pfam:PF09011 GeneTree:ENSGT00560000076717
IPI:IPI00567139 Ensembl:ENSRNOT00000049646 Uniprot:D4A535
Length = 204
Score = 111 (44.1 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 26/83 (31%), Positives = 42/83 (50%)
Query: 42 PLSIPEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENE 101
P +K K+P+ P F F + KI + +P + I +VTK + E W +K+ E E
Sbjct: 82 PGETKKKFKEPIAPSFLFCSEYCPKIKDEHPGLSIGDVTKKLGETWSNTAVNDKQPYEKE 141
Query: 102 YAKEKEIYAQNVKKYHDELTPEA 124
AK KE +++ Y + P+A
Sbjct: 142 AAKLKEKCEKDIAAYRAKGKPDA 164
>UNIPROTKB|B4DPY8 [details] [associations]
symbol:TOX4 "cDNA FLJ54372, highly similar to Epidermal
Langerhans cell protein LCP1" species:9606 "Homo sapiens"
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
EMBL:AL161747 EMBL:AE000658 HOVERGEN:HBG051013 UniGene:Hs.555910
HGNC:HGNC:20161 ChiTaRS:TOX4 EMBL:AK298555 IPI:IPI00879111
SMR:B4DPY8 STRING:B4DPY8 Ensembl:ENST00000448790 UCSC:uc010tlu.2
Uniprot:B4DPY8
Length = 598
Score = 116 (45.9 bits), Expect = 2.5e-05, P = 2.5e-05
Identities = 35/126 (27%), Positives = 59/126 (46%)
Query: 7 TTGVFTGGNVFNLRSCLMPHLNSVTTAGLKQQT--SQPLSIPEKPKKPLTPYFKFQGQIR 64
T+ + G V + R L V AG KQ+ + P +P+KP++ Y F +
Sbjct: 157 TSSLHEDG-VEDFRRQLPSQKTVVVEAGKKQKAPKKRKKKDPNEPQKPVSAYALFFRDTQ 215
Query: 65 NKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAKEKEIYAQNVKKYHD----EL 120
I +NPN EV+K+V+ W +GE +K+ + + K+ Y + + Y D +
Sbjct: 216 AAIKGQNPNATFGEVSKIVASMWDSLGEEQKQVYKRKTEAAKKEYLKALAAYKDNQECQA 275
Query: 121 TPEAIE 126
T E +E
Sbjct: 276 TVETVE 281
>UNIPROTKB|O94842 [details] [associations]
symbol:TOX4 "TOX high mobility group box family member 4"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0000785 "chromatin"
evidence=IDA] [GO:0072357 "PTW/PP1 phosphatase complex"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] InterPro:IPR009071 Pfam:PF00505
GO:GO:0005634 GO:GO:0003677 GO:GO:0000785 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0072357
HOGENOM:HOG000230949 eggNOG:NOG284736 CTD:9878 HOVERGEN:HBG051013
OMA:PPTLKMQ OrthoDB:EOG4JT05P EMBL:AB018280 EMBL:BC013689
IPI:IPI00006586 RefSeq:NP_055643.1 UniGene:Hs.555910
ProteinModelPortal:O94842 SMR:O94842 IntAct:O94842
MINT:MINT-1193640 STRING:O94842 PhosphoSite:O94842 PaxDb:O94842
PeptideAtlas:O94842 PRIDE:O94842 DNASU:9878 Ensembl:ENST00000262709
Ensembl:ENST00000405508 GeneID:9878 KEGG:hsa:9878 UCSC:uc001way.3
GeneCards:GC14P021944 HGNC:HGNC:20161 HPA:HPA017880 HPA:HPA027551
MIM:614032 neXtProt:NX_O94842 PharmGKB:PA162406753
InParanoid:O94842 PhylomeDB:O94842 ChiTaRS:TOX4 GenomeRNAi:9878
NextBio:37229 ArrayExpress:O94842 Bgee:O94842 CleanEx:HS_TOX4
Genevestigator:O94842 GermOnline:ENSG00000092203 Uniprot:O94842
Length = 621
Score = 116 (45.9 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 35/126 (27%), Positives = 59/126 (46%)
Query: 7 TTGVFTGGNVFNLRSCLMPHLNSVTTAGLKQQT--SQPLSIPEKPKKPLTPYFKFQGQIR 64
T+ + G V + R L V AG KQ+ + P +P+KP++ Y F +
Sbjct: 180 TSSLHEDG-VEDFRRQLPSQKTVVVEAGKKQKAPKKRKKKDPNEPQKPVSAYALFFRDTQ 238
Query: 65 NKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAKEKEIYAQNVKKYHD----EL 120
I +NPN EV+K+V+ W +GE +K+ + + K+ Y + + Y D +
Sbjct: 239 AAIKGQNPNATFGEVSKIVASMWDSLGEEQKQVYKRKTEAAKKEYLKALAAYKDNQECQA 298
Query: 121 TPEAIE 126
T E +E
Sbjct: 299 TVETVE 304
>UNIPROTKB|Q5R6A9 [details] [associations]
symbol:TOX4 "TOX high mobility group box family member 4"
species:9601 "Pongo abelii" [GO:0072357 "PTW/PP1 phosphatase
complex" evidence=ISS] InterPro:IPR009071 Pfam:PF00505
GO:GO:0005634 GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0072357 HOGENOM:HOG000230949
HSSP:Q66JW3 CTD:9878 HOVERGEN:HBG051013 OrthoDB:EOG4JT05P
EMBL:CR860582 EMBL:CR861113 RefSeq:NP_001126876.1
RefSeq:NP_001128875.1 UniGene:Pab.18544 UniGene:Pab.19683
GeneID:100173889 GeneID:100189804 KEGG:pon:100173889
KEGG:pon:100189804 Uniprot:Q5R6A9
Length = 621
Score = 116 (45.9 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 35/126 (27%), Positives = 59/126 (46%)
Query: 7 TTGVFTGGNVFNLRSCLMPHLNSVTTAGLKQQT--SQPLSIPEKPKKPLTPYFKFQGQIR 64
T+ + G V + R L V AG KQ+ + P +P+KP++ Y F +
Sbjct: 180 TSSLHEDG-VEDFRRQLPSQKTVVVEAGKKQKAPKKRKKKDPNEPQKPVSAYALFFRDTQ 238
Query: 65 NKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAKEKEIYAQNVKKYHD----EL 120
I +NPN EV+K+V+ W +GE +K+ + + K+ Y + + Y D +
Sbjct: 239 AAIKGQNPNATFGEVSKIVASMWDSLGEEQKQVYKRKTEAAKKEYLKALAAYKDNQECQA 298
Query: 121 TPEAIE 126
T E +E
Sbjct: 299 TVETVE 304
>RGD|1594733 [details] [associations]
symbol:LOC690521 "similar to High mobility group protein 1
(HMG-1) (High mobility group protein B1) (Amphoterin)
(Heparin-binding protein p30)" species:10116 "Rattus norvegicus"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] REFSEQ:XM_001074673 Ncbi:XP_001074673
Length = 213
Score = 111 (44.1 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 28/89 (31%), Positives = 43/89 (48%)
Query: 36 KQQTSQPLSIPEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEK 95
K +T + P PK+P + F F + R KI +P + I +VTK + E W +K
Sbjct: 82 KGETKKKFKDPNAPKRPPSA-FLFCSEYRPKIKGEHPALSIGDVTKKLGEVWTNTASDDK 140
Query: 96 KRLENEYAKEKEIYAQNVKKYHDELTPEA 124
+ E AK KE Y ++ Y + P+A
Sbjct: 141 QPCEKMAAKLKEKYEKDTAAYRAKGKPDA 169
>UNIPROTKB|Q8WW32 [details] [associations]
symbol:HMGB4 "High mobility group protein B4" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005694 "chromosome" evidence=IEA]
InterPro:IPR009071 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
GO:GO:0005694 GO:GO:0003677 EMBL:CH471059 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 Pfam:PF09011
EMBL:AL121980 HOGENOM:HOG000197861 HOVERGEN:HBG009000 CTD:127540
KO:K11297 OMA:RYQEEMM EMBL:DQ207367 EMBL:AK311985 EMBL:BC021180
IPI:IPI00815726 RefSeq:NP_660206.2 UniGene:Hs.568628
UniGene:Hs.667683 HSSP:P17741 ProteinModelPortal:Q8WW32 SMR:Q8WW32
PhosphoSite:Q8WW32 DMDM:74730920 PRIDE:Q8WW32 DNASU:127540
Ensembl:ENST00000519684 Ensembl:ENST00000522796 GeneID:127540
KEGG:hsa:127540 GeneCards:GC01P034326 HGNC:HGNC:24954 HPA:HPA035699
neXtProt:NX_Q8WW32 InParanoid:Q8WW32 PhylomeDB:Q8WW32 NextBio:82109
Bgee:Q8WW32 CleanEx:HS_HMGB4 Genevestigator:Q8WW32 Uniprot:Q8WW32
Length = 186
Score = 93 (37.8 bits), Expect = 2.9e-05, Sum P(2) = 2.9e-05
Identities = 22/71 (30%), Positives = 35/71 (49%)
Query: 48 KPKKPLTPYFKFQGQIRNKIMERNPN--IKIIEVTKLVSEEWKKIGEAEKKRLENEYAKE 105
KPK ++ Y F RNK E+ PN + E ++ SE+W+ I + EK + E +
Sbjct: 8 KPKANVSSYVHFLLNYRNKFKEQQPNTYVGFKEFSRKCSEKWRSISKHEKAKYEALAKLD 67
Query: 106 KEIYAQNVKKY 116
K Y + + Y
Sbjct: 68 KARYQEEMMNY 78
Score = 50 (22.7 bits), Expect = 2.9e-05, Sum P(2) = 2.9e-05
Identities = 9/31 (29%), Positives = 20/31 (64%)
Query: 149 RETGKPKKPGNSFYLFIKDNIDKKEYEGKSY 179
R+ +P++P +SF LF +D+ + + E ++
Sbjct: 88 RDPQEPRRPPSSFLLFCQDHYAQLKRENPNW 118
>UNIPROTKB|Q32L34 [details] [associations]
symbol:HMGB4 "High mobility group protein B4" species:9913
"Bos taurus" [GO:0005694 "chromosome" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR009071 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
GO:GO:0005694 GO:GO:0003677 eggNOG:COG5648 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 Pfam:PF09011
GeneTree:ENSGT00560000076898 HOGENOM:HOG000197861
HOVERGEN:HBG009000 EMBL:BC109790 IPI:IPI00760422
RefSeq:NP_001035652.1 UniGene:Bt.54197 ProteinModelPortal:Q32L34
Ensembl:ENSBTAT00000000438 GeneID:539195 KEGG:bta:539195 CTD:127540
InParanoid:Q32L34 KO:K11297 OMA:RYQEEMM OrthoDB:EOG4255TS
NextBio:20877839 Uniprot:Q32L34
Length = 194
Score = 93 (37.8 bits), Expect = 2.9e-05, Sum P(2) = 2.9e-05
Identities = 22/71 (30%), Positives = 35/71 (49%)
Query: 48 KPKKPLTPYFKFQGQIRNKIMERNPN--IKIIEVTKLVSEEWKKIGEAEKKRLENEYAKE 105
KPK ++ Y F RNK E+ PN + E ++ SE+W+ I + EK + E +
Sbjct: 8 KPKANVSSYIHFLLNYRNKFKEQQPNTYLGFKEFSRKCSEKWRSISKHEKAKYEALAKLD 67
Query: 106 KEIYAQNVKKY 116
K Y + + Y
Sbjct: 68 KARYQEEMMNY 78
Score = 51 (23.0 bits), Expect = 2.9e-05, Sum P(2) = 2.9e-05
Identities = 10/31 (32%), Positives = 19/31 (61%)
Query: 149 RETGKPKKPGNSFYLFIKDNIDKKEYEGKSY 179
R+ P++P +SF LF +D+ + + E S+
Sbjct: 88 RDPHAPRRPPSSFLLFCQDHYAQLKSENPSW 118
>UNIPROTKB|J9P699 [details] [associations]
symbol:HMGB1 "High mobility group protein B1" species:9615
"Canis lupus familiaris" [GO:0005634 "nucleus" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 Pfam:PF09011 GeneTree:ENSGT00560000076717
EMBL:AAEX03014229 EMBL:AAEX03014230 Ensembl:ENSCAFT00000046727
Uniprot:J9P699
Length = 196
Score = 110 (43.8 bits), Expect = 2.9e-05, P = 2.9e-05
Identities = 24/74 (32%), Positives = 37/74 (50%)
Query: 36 KQQTSQPLSIPEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEK 95
K +T + P PK+P + +F F + R KI +P + I +V K + E W +K
Sbjct: 82 KGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDK 141
Query: 96 KRLENEYAKEKEIY 109
+ E + AK KE Y
Sbjct: 142 QPYEKKAAKLKEKY 155
Score = 89 (36.4 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 20/73 (27%), Positives = 37/73 (50%)
Query: 46 PEKPKKPLTPYFKFQGQIRNKIMERNPN--IKIIEVTKLVSEEWKKIGEAEKKRLENEYA 103
P+KP+ ++ Y F R + +++P+ + E +K SE WK + EK + E+
Sbjct: 6 PKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAK 65
Query: 104 KEKEIYAQNVKKY 116
+K Y + +K Y
Sbjct: 66 ADKARYEREMKTY 78
Score = 49 (22.3 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 7/20 (35%), Positives = 14/20 (70%)
Query: 148 FRETGKPKKPGNSFYLFIKD 167
F++ PK+P ++F+LF +
Sbjct: 89 FKDPNAPKRPPSAFFLFCSE 108
>UNIPROTKB|F1MF42 [details] [associations]
symbol:LOC618297 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 GeneTree:ENSGT00560000076717 EMBL:DAAA02009820
IPI:IPI00687888 Ensembl:ENSBTAT00000027565 OMA:INTCREE
Uniprot:F1MF42
Length = 196
Score = 110 (43.8 bits), Expect = 2.9e-05, P = 2.9e-05
Identities = 24/79 (30%), Positives = 40/79 (50%)
Query: 46 PEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAKE 105
P PK+P + +F F + R KI +P + I + K + E W + +K+ E + AK
Sbjct: 81 PNAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 140
Query: 106 KEIYAQNVKKYHDELTPEA 124
KE Y +++ Y + EA
Sbjct: 141 KEKYEKDIAAYRAKGKSEA 159
>POMBASE|SPAC57A10.09c [details] [associations]
symbol:nhp6 "High-mobility group non-histone chromatin
protein (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0000790 "nuclear chromatin" evidence=ISO] [GO:0003677 "DNA
binding" evidence=ISM] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006334 "nucleosome assembly" evidence=ISO]
[GO:0006338 "chromatin remodeling" evidence=ISO] [GO:0006359
"regulation of transcription from RNA polymerase III promoter"
evidence=ISO] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISO] InterPro:IPR009071
PomBase:SPAC57A10.09c Pfam:PF00505 GO:GO:0005829 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0033554 GO:GO:0003677 GO:GO:0006281
GO:GO:0045944 GO:GO:0006351 GO:GO:0006338 eggNOG:COG5648
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0000790 GO:GO:0006334 GO:GO:0006359 HOGENOM:HOG000197861
OMA:LANPNNK OrthoDB:EOG4S7P0P PIR:T38936 RefSeq:NP_593314.1
ProteinModelPortal:P87057 STRING:P87057
EnsemblFungi:SPAC57A10.09c.1 GeneID:2542878 KEGG:spo:SPAC57A10.09c
NextBio:20803918 Uniprot:P87057
Length = 108
Score = 98 (39.6 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 19/75 (25%), Positives = 40/75 (53%)
Query: 46 PEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAKE 105
P PK+ ++ + F + R K+ NP+ ++ L+ + WK++ E++ E + ++
Sbjct: 13 PNTPKRNMSAFMFFSIENREKMKTDNPDATFGQLGSLLGKRWKELTSTEREPYEEKARQD 72
Query: 106 KEIYAQNVKKYHDEL 120
KE Y + K+Y +L
Sbjct: 73 KERYERERKEYDTKL 87
>FB|FBgn0010278 [details] [associations]
symbol:Ssrp "Structure specific recognition protein"
species:7227 "Drosophila melanogaster" [GO:0000217 "DNA secondary
structure binding" evidence=ISS] [GO:0003697 "single-stranded DNA
binding" evidence=ISS;NAS] [GO:0005634 "nucleus" evidence=ISS;NAS]
[GO:0003727 "single-stranded RNA binding" evidence=NAS] [GO:0005730
"nucleolus" evidence=NAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0001672 "regulation of chromatin assembly or
disassembly" evidence=IMP] [GO:0035101 "FACT complex"
evidence=IDA;TAS] [GO:0043621 "protein self-association"
evidence=IDA] [GO:0031492 "nucleosomal DNA binding" evidence=IDA]
[GO:0051101 "regulation of DNA binding" evidence=IMP] [GO:0022008
"neurogenesis" evidence=IMP] InterPro:IPR009071 InterPro:IPR000969
PRINTS:PR00887 Pfam:PF00505 Pfam:PF03531 EMBL:AE013599
GO:GO:0005694 GO:GO:0022008 GO:GO:0006355 Gene3D:2.30.29.30
InterPro:IPR011993 GO:GO:0006260 GO:GO:0006281 GO:GO:0006351
GO:GO:0003723 GO:GO:0043621 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0051101 GO:GO:0031492
GeneTree:ENSGT00700000104547 GO:GO:0001672 GO:GO:0035101
InterPro:IPR013719 Pfam:PF08512 eggNOG:COG5165 KO:K09272
InterPro:IPR024954 OMA:PVEVKKG EMBL:L08825 EMBL:X68408
EMBL:BT004831 PIR:A48217 PIR:S33688 RefSeq:NP_523830.2
UniGene:Dm.3383 PDB:1WXL PDBsum:1WXL ProteinModelPortal:Q05344
SMR:Q05344 IntAct:Q05344 STRING:Q05344 PaxDb:Q05344
EnsemblMetazoa:FBtr0072242 GeneID:37767 KEGG:dme:Dmel_CG4817
CTD:37767 FlyBase:FBgn0010278 InParanoid:Q05344 OrthoDB:EOG40CFZ2
PhylomeDB:Q05344 EvolutionaryTrace:Q05344 GenomeRNAi:37767
NextBio:805310 Bgee:Q05344 GermOnline:CG4817 Uniprot:Q05344
Length = 723
Score = 116 (45.9 bits), Expect = 3.2e-05, P = 3.2e-05
Identities = 26/87 (29%), Positives = 44/87 (50%)
Query: 36 KQQTSQPLSIPE---KPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGE 92
K++T +P + KPK+ T + + R I NP IK+ E+ K E WK++
Sbjct: 539 KERTKKPSKKKKDSGKPKRATTAFMLWLNDTRESIKRENPGIKVTEIAKKGGEMWKEL-- 596
Query: 93 AEKKRLENEYAKEKEIYAQNVKKYHDE 119
+K + E+ AK+K+ Y ++ Y E
Sbjct: 597 KDKSKWEDAAAKDKQRYHDEMRNYKPE 623
>UNIPROTKB|P40673 [details] [associations]
symbol:HMGB2 "High mobility group protein B2" species:9913
"Bos taurus" [GO:0048471 "perinuclear region of cytoplasm"
evidence=ISS] [GO:0000793 "condensed chromosome" evidence=ISS]
[GO:0008301 "DNA binding, bending" evidence=ISS;IDA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0006288 "base-excision repair, DNA ligation"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0003684 "damaged DNA binding"
evidence=IDA] [GO:0033151 "V(D)J recombination" evidence=IDA]
[GO:0006338 "chromatin remodeling" evidence=NAS] [GO:0042393
"histone binding" evidence=IDA] [GO:0003697 "single-stranded DNA
binding" evidence=IDA] [GO:0006265 "DNA topological change"
evidence=IDA] [GO:0003690 "double-stranded DNA binding"
evidence=IDA] [GO:0006310 "DNA recombination" evidence=IDA]
[GO:0071222 "cellular response to lipopolysaccharide" evidence=IEA]
[GO:0060326 "cell chemotaxis" evidence=IEA] [GO:0050786 "RAGE
receptor binding" evidence=IEA] [GO:0048545 "response to steroid
hormone stimulus" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0045654 "positive regulation of megakaryocyte
differentiation" evidence=IEA] [GO:0045648 "positive regulation of
erythrocyte differentiation" evidence=IEA] [GO:0044212
"transcription regulatory region DNA binding" evidence=IEA]
[GO:0043388 "positive regulation of DNA binding" evidence=IEA]
[GO:0043234 "protein complex" evidence=IEA] [GO:0042056
"chemoattractant activity" evidence=IEA] [GO:0032075 "positive
regulation of nuclease activity" evidence=IEA] [GO:0019904 "protein
domain specific binding" evidence=IEA] [GO:0008584 "male gonad
development" evidence=IEA] [GO:0007289 "spermatid nucleus
differentiation" evidence=IEA] [GO:0005615 "extracellular space"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0001938 "positive
regulation of endothelial cell proliferation" evidence=IEA]
InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
GO:GO:0005634 GO:GO:0048471 GO:GO:0045892 GO:GO:0005615
GO:GO:0043234 GO:GO:0005730 GO:GO:0003684 GO:GO:0001938
GO:GO:0045944 GO:GO:0003700 GO:GO:0006357 GO:GO:0071222
GO:GO:0048545 GO:GO:0008584 GO:GO:0006338 eggNOG:COG5648
GO:GO:0008301 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0044212 GO:GO:0007289 GO:GO:0003690
GO:GO:0003697 GO:GO:0045648 GO:GO:0045654 GO:GO:0060326
GO:GO:0042393 GO:GO:0000793 GO:GO:0042056 GO:GO:0043388
Pfam:PF09011 GO:GO:0032075 GO:GO:0033151 GO:GO:0006265
HOGENOM:HOG000197861 KO:K11295 GeneTree:ENSGT00560000076717
HOVERGEN:HBG009000 GO:GO:0006288 EMBL:BC109755 IPI:IPI00689856
RefSeq:NP_001032705.1 UniGene:Bt.6397 ProteinModelPortal:P40673
SMR:P40673 STRING:P40673 PRIDE:P40673 Ensembl:ENSBTAT00000020096
GeneID:540444 KEGG:bta:540444 CTD:3148 InParanoid:P40673
OMA:KIKNDHP OrthoDB:EOG4TTGK2 NextBio:20878641 Uniprot:P40673
Length = 209
Score = 110 (43.8 bits), Expect = 3.7e-05, P = 3.7e-05
Identities = 24/79 (30%), Positives = 40/79 (50%)
Query: 46 PEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAKE 105
P PK+P + +F F + R KI +P + I + K + E W + +K+ E + AK
Sbjct: 92 PNAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 151
Query: 106 KEIYAQNVKKYHDELTPEA 124
KE Y +++ Y + EA
Sbjct: 152 KEKYEKDIAAYRAKGKSEA 170
Score = 92 (37.4 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 20/73 (27%), Positives = 36/73 (49%)
Query: 46 PEKPKKPLTPYFKFQGQIRNKIMERNPN--IKIIEVTKLVSEEWKKIGEAEKKRLENEYA 103
P KP+ ++ Y F R + +++P+ + E +K SE WK + EK + E+
Sbjct: 6 PNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMAK 65
Query: 104 KEKEIYAQNVKKY 116
+K Y + +K Y
Sbjct: 66 SDKARYDREMKNY 78
Score = 48 (22.0 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 10/32 (31%), Positives = 19/32 (59%)
Query: 149 RETGKPKKPGNSFYLFIKDNIDK--KEYEGKS 178
++ PK+P ++F+LF ++ K E+ G S
Sbjct: 90 KDPNAPKRPPSAFFLFCSEHRPKIKSEHPGLS 121
>UNIPROTKB|P26583 [details] [associations]
symbol:HMGB2 "High mobility group protein B2" species:9606
"Homo sapiens" [GO:0007289 "spermatid nucleus differentiation"
evidence=IEA] [GO:0008584 "male gonad development" evidence=IEA]
[GO:0019904 "protein domain specific binding" evidence=IEA]
[GO:0048545 "response to steroid hormone stimulus" evidence=IEA]
[GO:0048015 "phosphatidylinositol-mediated signaling" evidence=NAS]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IDA] [GO:0006325 "chromatin organization" evidence=NAS]
[GO:0008301 "DNA binding, bending" evidence=IDA] [GO:0006334
"nucleosome assembly" evidence=NAS] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0000793 "condensed chromosome" evidence=IDA] [GO:0006288
"base-excision repair, DNA ligation" evidence=IDA] [GO:0001938
"positive regulation of endothelial cell proliferation"
evidence=IDA] [GO:0042056 "chemoattractant activity" evidence=IDA]
[GO:0060326 "cell chemotaxis" evidence=IDA] [GO:0050786 "RAGE
receptor binding" evidence=IGI] [GO:0003684 "damaged DNA binding"
evidence=IDA] [GO:0043234 "protein complex" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0003677 "DNA
binding" evidence=IMP] [GO:0005615 "extracellular space"
evidence=IDA] [GO:0071222 "cellular response to lipopolysaccharide"
evidence=IEP] [GO:0051103 "DNA ligation involved in DNA repair"
evidence=ISS] [GO:0006265 "DNA topological change" evidence=ISS]
[GO:0003690 "double-stranded DNA binding" evidence=ISS] [GO:0003697
"single-stranded DNA binding" evidence=ISS] [GO:0032075 "positive
regulation of nuclease activity" evidence=IDA] [GO:0033151 "V(D)J
recombination" evidence=ISS] [GO:0044212 "transcription regulatory
region DNA binding" evidence=IDA] [GO:0045893 "positive regulation
of transcription, DNA-dependent" evidence=IDA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IDA] [GO:0043388 "positive regulation of DNA
binding" evidence=IDA] [GO:0045648 "positive regulation of
erythrocyte differentiation" evidence=IMP] [GO:0045654 "positive
regulation of megakaryocyte differentiation" evidence=IMP]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0006309 "apoptotic DNA fragmentation" evidence=TAS] [GO:0006915
"apoptotic process" evidence=TAS] [GO:0006921 "cellular component
disassembly involved in execution phase of apoptosis" evidence=TAS]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IDA] [GO:0050918 "positive chemotaxis" evidence=IDA]
Reactome:REACT_578 InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0048471 GO:GO:0045892
GO:GO:0005615 GO:GO:0043234 GO:GO:0005654 GO:GO:0003684
GO:GO:0001938 GO:GO:0045944 GO:GO:0003700 GO:GO:0071222
GO:GO:0048545 GO:GO:0008584 eggNOG:COG5648 GO:GO:0008301
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0044212 GO:GO:0007289 GO:GO:0003690 GO:GO:0003697
EMBL:CH471056 GO:GO:0045648 GO:GO:0045654 GO:GO:0048015
GO:GO:0060326 GO:GO:0006309 GO:GO:0000793 GO:GO:0042056
GO:GO:0006334 GO:GO:0043388 Pfam:PF09011 GO:GO:0032075
GO:GO:0033151 GO:GO:0006265 HOGENOM:HOG000197861 KO:K11295
HOVERGEN:HBG009000 GO:GO:0006288 HPA:HPA003506 GO:GO:0050786
CTD:3148 OMA:KIKNDHP OrthoDB:EOG4TTGK2 EMBL:M83665 EMBL:X62534
EMBL:BT019782 EMBL:AK311864 EMBL:BC001063 EMBL:BC100019 EMBL:Z17240
IPI:IPI00219097 PIR:A42425 PIR:S30221 RefSeq:NP_001124160.1
RefSeq:NP_001124161.1 RefSeq:NP_002120.1 UniGene:Hs.434953
ProteinModelPortal:P26583 SMR:P26583 IntAct:P26583 MINT:MINT-240190
STRING:P26583 PhosphoSite:P26583 DMDM:123374 PaxDb:P26583
PeptideAtlas:P26583 PRIDE:P26583 DNASU:3148 Ensembl:ENST00000296503
Ensembl:ENST00000438704 Ensembl:ENST00000446922 GeneID:3148
KEGG:hsa:3148 UCSC:uc003ita.3 GeneCards:GC04M174252 HGNC:HGNC:5000
MIM:163906 neXtProt:NX_P26583 PharmGKB:PA35091 InParanoid:P26583
ChiTaRS:HMGB2 GenomeRNAi:3148 NextBio:12476 PMAP-CutDB:P26583
ArrayExpress:P26583 Bgee:P26583 CleanEx:HS_HMGB2
Genevestigator:P26583 GermOnline:ENSG00000164104 Uniprot:P26583
Length = 209
Score = 110 (43.8 bits), Expect = 3.7e-05, P = 3.7e-05
Identities = 24/79 (30%), Positives = 40/79 (50%)
Query: 46 PEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAKE 105
P PK+P + +F F + R KI +P + I + K + E W + +K+ E + AK
Sbjct: 92 PNAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 151
Query: 106 KEIYAQNVKKYHDELTPEA 124
KE Y +++ Y + EA
Sbjct: 152 KEKYEKDIAAYRAKGKSEA 170
Score = 92 (37.4 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 20/73 (27%), Positives = 36/73 (49%)
Query: 46 PEKPKKPLTPYFKFQGQIRNKIMERNPN--IKIIEVTKLVSEEWKKIGEAEKKRLENEYA 103
P KP+ ++ Y F R + +++P+ + E +K SE WK + EK + E+
Sbjct: 6 PNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMAK 65
Query: 104 KEKEIYAQNVKKY 116
+K Y + +K Y
Sbjct: 66 SDKARYDREMKNY 78
Score = 48 (22.0 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 10/32 (31%), Positives = 19/32 (59%)
Query: 149 RETGKPKKPGNSFYLFIKDNIDK--KEYEGKS 178
++ PK+P ++F+LF ++ K E+ G S
Sbjct: 90 KDPNAPKRPPSAFFLFCSEHRPKIKSEHPGLS 121
>UNIPROTKB|E2QY30 [details] [associations]
symbol:HMGB2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071222 "cellular response to
lipopolysaccharide" evidence=IEA] [GO:0060326 "cell chemotaxis"
evidence=IEA] [GO:0050786 "RAGE receptor binding" evidence=IEA]
[GO:0048545 "response to steroid hormone stimulus" evidence=IEA]
[GO:0048471 "perinuclear region of cytoplasm" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0045654 "positive regulation of megakaryocyte differentiation"
evidence=IEA] [GO:0045648 "positive regulation of erythrocyte
differentiation" evidence=IEA] [GO:0044212 "transcription
regulatory region DNA binding" evidence=IEA] [GO:0043388 "positive
regulation of DNA binding" evidence=IEA] [GO:0043234 "protein
complex" evidence=IEA] [GO:0042056 "chemoattractant activity"
evidence=IEA] [GO:0032075 "positive regulation of nuclease
activity" evidence=IEA] [GO:0019904 "protein domain specific
binding" evidence=IEA] [GO:0008584 "male gonad development"
evidence=IEA] [GO:0008301 "DNA binding, bending" evidence=IEA]
[GO:0007289 "spermatid nucleus differentiation" evidence=IEA]
[GO:0006288 "base-excision repair, DNA ligation" evidence=IEA]
[GO:0005615 "extracellular space" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0001938 "positive regulation of endothelial cell proliferation"
evidence=IEA] [GO:0000793 "condensed chromosome" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0048471
GO:GO:0045892 GO:GO:0005615 GO:GO:0043234 GO:GO:0005730
GO:GO:0003684 GO:GO:0001938 GO:GO:0045944 GO:GO:0003700
GO:GO:0071222 GO:GO:0048545 GO:GO:0008584 GO:GO:0008301
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0044212 GO:GO:0007289 GO:GO:0045648 GO:GO:0045654
GO:GO:0060326 GO:GO:0000793 GO:GO:0042056 GO:GO:0043388
Pfam:PF09011 GO:GO:0032075 KO:K11295 GeneTree:ENSGT00560000076717
GO:GO:0006288 CTD:3148 OMA:KIKNDHP EMBL:AAEX03014309
RefSeq:XP_543194.2 Ensembl:ENSCAFT00000012535 GeneID:486068
KEGG:cfa:486068 NextBio:20859918 Uniprot:E2QY30
Length = 210
Score = 110 (43.8 bits), Expect = 3.8e-05, P = 3.8e-05
Identities = 24/79 (30%), Positives = 40/79 (50%)
Query: 46 PEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAKE 105
P PK+P + +F F + R KI +P + I + K + E W + +K+ E + AK
Sbjct: 92 PNAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 151
Query: 106 KEIYAQNVKKYHDELTPEA 124
KE Y +++ Y + EA
Sbjct: 152 KEKYEKDIAAYRAKGKSEA 170
Score = 92 (37.4 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 20/73 (27%), Positives = 36/73 (49%)
Query: 46 PEKPKKPLTPYFKFQGQIRNKIMERNPN--IKIIEVTKLVSEEWKKIGEAEKKRLENEYA 103
P KP+ ++ Y F R + +++P+ + E +K SE WK + EK + E+
Sbjct: 6 PNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMAK 65
Query: 104 KEKEIYAQNVKKY 116
+K Y + +K Y
Sbjct: 66 SDKARYDREMKNY 78
Score = 48 (22.0 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 10/32 (31%), Positives = 19/32 (59%)
Query: 149 RETGKPKKPGNSFYLFIKDNIDK--KEYEGKS 178
++ PK+P ++F+LF ++ K E+ G S
Sbjct: 90 KDPNAPKRPPSAFFLFCSEHRPKIKSEHPGLS 121
>UNIPROTKB|I3LAV9 [details] [associations]
symbol:TOX4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0072357 "PTW/PP1 phosphatase complex" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000785 "chromatin"
evidence=IEA] InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634
GO:GO:0000785 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GeneTree:ENSGT00560000076898 GO:GO:0072357
OMA:PPTLKMQ EMBL:CU695044 RefSeq:XP_001929153.1 UniGene:Ssc.97365
Ensembl:ENSSSCT00000027379 GeneID:100152681 KEGG:ssc:100152681
Uniprot:I3LAV9
Length = 620
Score = 115 (45.5 bits), Expect = 4.7e-05, P = 4.7e-05
Identities = 30/103 (29%), Positives = 51/103 (49%)
Query: 30 VTTAGLKQQT--SQPLSIPEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEW 87
V AG KQ+ + P +P+KP++ Y F + I +NPN EV+K+V+ W
Sbjct: 202 VVEAGKKQKAPKKRKKKDPNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMW 261
Query: 88 KKIGEAEKKRLENEYAKEKEIYAQNVKKYHD----ELTPEAIE 126
+GE +K+ + + K+ Y + + Y D + T E +E
Sbjct: 262 DSLGEEQKQVYKRKTEAAKKEYLKALAAYKDNQECQATVETVE 304
>RGD|3759 [details] [associations]
symbol:Sry "sex determining region Y" species:10116 "Rattus
norvegicus" [GO:0000122 "negative regulation of transcription from
RNA polymerase II promoter" evidence=ISO] [GO:0003677 "DNA binding"
evidence=ISO] [GO:0003705 "RNA polymerase II distal enhancer
sequence-specific DNA binding transcription factor activity"
evidence=ISO] [GO:0005516 "calmodulin binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005737 "cytoplasm"
evidence=ISO;IDA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0007530 "sex determination" evidence=ISO]
[GO:0007548 "sex differentiation" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=ISO] [GO:0008301 "DNA
binding, bending" evidence=ISO] [GO:0008584 "male gonad development"
evidence=ISO] [GO:0010629 "negative regulation of gene expression"
evidence=ISO] [GO:0016607 "nuclear speck" evidence=IEA] [GO:0019899
"enzyme binding" evidence=IPI] [GO:0030154 "cell differentiation"
evidence=IEA] [GO:0030238 "male sex determination" evidence=ISO;IEP]
[GO:0043231 "intracellular membrane-bounded organelle" evidence=ISO]
[GO:0043565 "sequence-specific DNA binding" evidence=IMP] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045944 "positive regulation of transcription from RNA polymerase
II promoter" evidence=IDA] [GO:2000020 "positive regulation of male
gonad development" evidence=ISO] InterPro:IPR009071 Pfam:PF00505
RGD:3759 GO:GO:0005634 GO:GO:0005737 GO:GO:0030154 GO:GO:0016607
GO:GO:0043565 GO:GO:0045944 GO:GO:0006351 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0007548
GO:GO:0030238 HOVERGEN:HBG008712 InterPro:IPR027151
PANTHER:PTHR10270:SF84 EMBL:X89730 EMBL:AJ222688 EMBL:Z26907
IPI:IPI00551785 PIR:S58088 ProteinModelPortal:P36394 SMR:P36394
PRIDE:P36394 Genevestigator:P36394 Uniprot:P36394
Length = 121
Score = 96 (38.9 bits), Expect = 5.0e-05, P = 5.0e-05
Identities = 17/67 (25%), Positives = 38/67 (56%)
Query: 50 KKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAKEKEIY 109
K+P+ + + R+K+ ++NP+++ E++K + +WK + EAEK+ E + K ++
Sbjct: 6 KRPMNAFMVWSRGERHKLAQQNPSMQNSEISKQLGYQWKSLTEAEKRPFFQEAQRLKTLH 65
Query: 110 AQNVKKY 116
+ Y
Sbjct: 66 REKYPNY 72
>UNIPROTKB|P0CB48 [details] [associations]
symbol:UBTFL6 "Putative upstream-binding factor 1-like
protein 6" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
EMBL:AC017099 IPI:IPI00943552 ProteinModelPortal:P0CB48 SMR:P0CB48
PhosphoSite:P0CB48 DMDM:263545823 PRIDE:P0CB48
GeneCards:GC02M098253 HGNC:HGNC:35406 neXtProt:NX_P0CB48
PharmGKB:PA164727481 NextBio:115131 Uniprot:P0CB48
Length = 400
Score = 106 (42.4 bits), Expect = 5.5e-05, Sum P(2) = 5.5e-05
Identities = 20/74 (27%), Positives = 46/74 (62%)
Query: 46 PEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAKE 105
P+ PK+ LT Y +F + + + P ++ EVTK++S+++K++ E K++ ++ KE
Sbjct: 104 PDFPKRLLTAYIRFFKENWPQYSQMYPGMRSQEVTKILSKKYKELPEQMKQKHIQDFRKE 163
Query: 106 KEIYAQNVKKYHDE 119
K+ + + + ++ +E
Sbjct: 164 KQEFEEKLARFREE 177
Score = 41 (19.5 bits), Expect = 5.5e-05, Sum P(2) = 5.5e-05
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 152 GKPKKPG-NSFYLFIKDNIDKKEYE 175
G+P+KP N + F +D+ KE +
Sbjct: 226 GEPQKPPMNGYQKFHQDSWSSKELQ 250
>UNIPROTKB|P17741 [details] [associations]
symbol:HMGB2 "High mobility group protein B2" species:9823
"Sus scrofa" [GO:0006265 "DNA topological change" evidence=IDA]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0008301 "DNA binding,
bending" evidence=ISS;IDA] [GO:0051103 "DNA ligation involved in
DNA repair" evidence=IDA] [GO:0048471 "perinuclear region of
cytoplasm" evidence=ISS] [GO:0006357 "regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0000793 "condensed chromosome" evidence=ISS] [GO:0006288
"base-excision repair, DNA ligation" evidence=ISS]
InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
GO:GO:0005634 GO:GO:0048471 GO:GO:0006357 eggNOG:COG5648
GO:GO:0008301 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0000793 Pfam:PF09011 GO:GO:0006265
HOGENOM:HOG000197861 KO:K11295 HOVERGEN:HBG009000 GO:GO:0006288
CTD:3148 OrthoDB:EOG4TTGK2 EMBL:J02895 PIR:A34719
RefSeq:NP_999228.1 UniGene:Ssc.226 PDB:1J3C PDB:1J3D PDB:1J3X
PDBsum:1J3C PDBsum:1J3D PDBsum:1J3X ProteinModelPortal:P17741
SMR:P17741 GeneID:397130 KEGG:ssc:397130 EvolutionaryTrace:P17741
Uniprot:P17741
Length = 210
Score = 109 (43.4 bits), Expect = 5.8e-05, P = 5.8e-05
Identities = 24/79 (30%), Positives = 40/79 (50%)
Query: 46 PEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAKE 105
P PK+P + +F F + R KI +P + I + K + E W + +K+ E + AK
Sbjct: 92 PNAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 151
Query: 106 KEIYAQNVKKYHDELTPEA 124
KE Y +++ Y + EA
Sbjct: 152 KEKYEKDIAAYRAKGKGEA 170
Score = 92 (37.4 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 20/73 (27%), Positives = 36/73 (49%)
Query: 46 PEKPKKPLTPYFKFQGQIRNKIMERNPN--IKIIEVTKLVSEEWKKIGEAEKKRLENEYA 103
P KP+ ++ Y F R + +++P+ + E +K SE WK + EK + E+
Sbjct: 6 PNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMAK 65
Query: 104 KEKEIYAQNVKKY 116
+K Y + +K Y
Sbjct: 66 SDKARYDREMKNY 78
Score = 48 (22.0 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 10/32 (31%), Positives = 19/32 (59%)
Query: 149 RETGKPKKPGNSFYLFIKDNIDK--KEYEGKS 178
++ PK+P ++F+LF ++ K E+ G S
Sbjct: 90 KDPNAPKRPPSAFFLFCSEHRPKIKSEHPGLS 121
>UNIPROTKB|Q5T7C6 [details] [associations]
symbol:HMGB1 "High mobility group protein B1" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 HOGENOM:HOG000197861 HOVERGEN:HBG009000 EMBL:AL353648
UniGene:Hs.434102 UniGene:Hs.593339 UniGene:Hs.596078
UniGene:Hs.741195 HGNC:HGNC:4983 ChiTaRS:HMGB1 EMBL:AL138681
IPI:IPI00645948 SMR:Q5T7C6 MINT:MINT-1373108
Ensembl:ENST00000426225 Uniprot:Q5T7C6
Length = 162
Score = 89 (36.4 bits), Expect = 6.2e-05, Sum P(2) = 6.2e-05
Identities = 20/73 (27%), Positives = 37/73 (50%)
Query: 46 PEKPKKPLTPYFKFQGQIRNKIMERNPN--IKIIEVTKLVSEEWKKIGEAEKKRLENEYA 103
P+KP+ ++ Y F R + +++P+ + E +K SE WK + EK + E+
Sbjct: 6 PKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAK 65
Query: 104 KEKEIYAQNVKKY 116
+K Y + +K Y
Sbjct: 66 ADKARYEREMKTY 78
Score = 49 (22.3 bits), Expect = 6.2e-05, Sum P(2) = 6.2e-05
Identities = 7/20 (35%), Positives = 14/20 (70%)
Query: 148 FRETGKPKKPGNSFYLFIKD 167
F++ PK+P ++F+LF +
Sbjct: 89 FKDPNAPKRPPSAFFLFCSE 108
>MGI|MGI:96157 [details] [associations]
symbol:Hmgb2 "high mobility group box 2" species:10090 "Mus
musculus" [GO:0000793 "condensed chromosome" evidence=ISO]
[GO:0001938 "positive regulation of endothelial cell proliferation"
evidence=ISO] [GO:0003677 "DNA binding" evidence=ISO] [GO:0003684
"damaged DNA binding" evidence=ISO] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISO]
[GO:0005615 "extracellular space" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO;IC] [GO:0005694 "chromosome" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006288 "base-excision
repair, DNA ligation" evidence=ISO] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=ISO;IDA]
[GO:0007283 "spermatogenesis" evidence=IMP] [GO:0007289 "spermatid
nucleus differentiation" evidence=IMP] [GO:0007399 "nervous system
development" evidence=ISO] [GO:0008289 "lipid binding"
evidence=ISO] [GO:0008301 "DNA binding, bending" evidence=ISO]
[GO:0008584 "male gonad development" evidence=IMP] [GO:0019904
"protein domain specific binding" evidence=IPI] [GO:0031493
"nucleosomal histone binding" evidence=ISO] [GO:0032075 "positive
regulation of nuclease activity" evidence=ISO] [GO:0042056
"chemoattractant activity" evidence=ISO] [GO:0043066 "negative
regulation of apoptotic process" evidence=IMP] [GO:0043234 "protein
complex" evidence=ISO] [GO:0043388 "positive regulation of DNA
binding" evidence=ISO;IDA] [GO:0044212 "transcription regulatory
region DNA binding" evidence=ISO] [GO:0045648 "positive regulation
of erythrocyte differentiation" evidence=ISO] [GO:0045654 "positive
regulation of megakaryocyte differentiation" evidence=ISO]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=ISO] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=ISO] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISO;IMP]
[GO:0048471 "perinuclear region of cytoplasm" evidence=ISO]
[GO:0048545 "response to steroid hormone stimulus" evidence=IMP]
[GO:0050786 "RAGE receptor binding" evidence=ISO] [GO:0050918
"positive chemotaxis" evidence=ISO] [GO:0051054 "positive
regulation of DNA metabolic process" evidence=ISO] [GO:0060326
"cell chemotaxis" evidence=ISO] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 MGI:MGI:96157 Pfam:PF00505
GO:GO:0005634 GO:GO:0048471 GO:GO:0045892 GO:GO:0043066
GO:GO:0005615 GO:GO:0043234 GO:GO:0005730 GO:GO:0003684
GO:GO:0001938 GO:GO:0045944 GO:GO:0003700 GO:GO:0071222
GO:GO:0048545 GO:GO:0008584 eggNOG:COG5648 GO:GO:0008301
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0044212 GO:GO:0007289 GO:GO:0045648 GO:GO:0045654
GO:GO:0060326 GO:GO:0000793 GO:GO:0042056 GO:GO:0043388
Pfam:PF09011 GO:GO:0032075 HOGENOM:HOG000197861 KO:K11295
GeneTree:ENSGT00560000076717 HOVERGEN:HBG009000 GO:GO:0006288
CTD:3148 OMA:KIKNDHP OrthoDB:EOG4TTGK2 EMBL:X67668 EMBL:Z46757
EMBL:AF267733 EMBL:AK003773 EMBL:AK008443 EMBL:AK012568
EMBL:AK135296 EMBL:AK135297 EMBL:AK146212 EMBL:BC002050
EMBL:BC046759 EMBL:BC083108 IPI:IPI00462291 PIR:S26062 PIR:S54774
RefSeq:NP_032278.1 UniGene:Mm.279998 UniGene:Mm.470487
UniGene:Mm.490424 ProteinModelPortal:P30681 SMR:P30681 DIP:DIP-899N
MINT:MINT-4097539 STRING:P30681 PhosphoSite:P30681 PaxDb:P30681
PRIDE:P30681 Ensembl:ENSMUST00000067925 GeneID:97165 KEGG:mmu:97165
UCSC:uc009lsx.2 InParanoid:P30681 NextBio:352589 Bgee:P30681
CleanEx:MM_HMGB2 Genevestigator:P30681
GermOnline:ENSMUSG00000054717 Uniprot:P30681
Length = 210
Score = 107 (42.7 bits), Expect = 0.00011, P = 0.00011
Identities = 24/79 (30%), Positives = 40/79 (50%)
Query: 46 PEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAKE 105
P PK+P + +F F + R KI +P + I + K + E W + +K+ E + AK
Sbjct: 92 PNAPKRPPSAFFLFCSENRPKIKIEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 151
Query: 106 KEIYAQNVKKYHDELTPEA 124
KE Y +++ Y + EA
Sbjct: 152 KEKYEKDIAAYRAKGKSEA 170
Score = 91 (37.1 bits), Expect = 6.9e-05, Sum P(2) = 6.9e-05
Identities = 20/73 (27%), Positives = 36/73 (49%)
Query: 46 PEKPKKPLTPYFKFQGQIRNKIMERNPN--IKIIEVTKLVSEEWKKIGEAEKKRLENEYA 103
P KP+ ++ Y F R + +++P+ + E +K SE WK + EK + E+
Sbjct: 6 PNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDLAK 65
Query: 104 KEKEIYAQNVKKY 116
+K Y + +K Y
Sbjct: 66 SDKARYDREMKNY 78
Score = 52 (23.4 bits), Expect = 6.9e-05, Sum P(2) = 6.9e-05
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 149 RETGKPKKPGNSFYLFIKDNIDKKEYE 175
++ PK+P ++F+LF +N K + E
Sbjct: 90 KDPNAPKRPPSAFFLFCSENRPKIKIE 116
>RGD|1559962 [details] [associations]
symbol:RGD1559962 "similar to High mobility group protein 2
(HMG-2)" species:10116 "Rattus norvegicus" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
REFSEQ:XM_001074365 Ncbi:XP_001074365
Length = 209
Score = 108 (43.1 bits), Expect = 7.9e-05, P = 7.9e-05
Identities = 22/71 (30%), Positives = 37/71 (52%)
Query: 46 PEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAKE 105
P PK+P + +F F + R KI +P + I + K + E W + +K+ E + AK
Sbjct: 92 PNAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 151
Query: 106 KEIYAQNVKKY 116
KE Y +++ Y
Sbjct: 152 KEEYEKDIAAY 162
Score = 90 (36.7 bits), Expect = 0.00025, Sum P(2) = 0.00025
Identities = 20/73 (27%), Positives = 35/73 (47%)
Query: 46 PEKPKKPLTPYFKFQGQIRNKIMERNPN--IKIIEVTKLVSEEWKKIGEAEKKRLENEYA 103
P KP+ ++ Y F R + ++P+ + E +K SE WK + EK + E+
Sbjct: 6 PNKPRGKMSSYAFFVQTCREEHKNKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDLAK 65
Query: 104 KEKEIYAQNVKKY 116
+K Y + +K Y
Sbjct: 66 SDKARYDREMKNY 78
Score = 48 (22.0 bits), Expect = 0.00025, Sum P(2) = 0.00025
Identities = 10/32 (31%), Positives = 19/32 (59%)
Query: 149 RETGKPKKPGNSFYLFIKDNIDK--KEYEGKS 178
++ PK+P ++F+LF ++ K E+ G S
Sbjct: 90 KDPNAPKRPPSAFFLFCSEHRPKIKSEHPGLS 121
>RGD|1561694 [details] [associations]
symbol:RGD1561694 "similar to High mobility group protein 2
(HMG-2)" species:10116 "Rattus norvegicus" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
REFSEQ:XM_003752741 Ncbi:XP_003752789
Length = 209
Score = 108 (43.1 bits), Expect = 7.9e-05, P = 7.9e-05
Identities = 22/71 (30%), Positives = 37/71 (52%)
Query: 46 PEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAKE 105
P PK+P + +F F + R KI +P + I + K + E W + +K+ E + AK
Sbjct: 92 PNAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 151
Query: 106 KEIYAQNVKKY 116
KE Y +++ Y
Sbjct: 152 KEKYEKDIAAY 162
Score = 89 (36.4 bits), Expect = 0.00034, Sum P(2) = 0.00034
Identities = 20/73 (27%), Positives = 36/73 (49%)
Query: 46 PEKPKKPLTPYFKFQGQIRNKIMERNPN--IKIIEVTKLVSEEWKKIGEAEKKRLENEYA 103
P KP+ ++ Y F R + +++P+ + E +K SE WK + EK + E+
Sbjct: 6 PNKPRGKMSLYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDLAK 65
Query: 104 KEKEIYAQNVKKY 116
+K Y + +K Y
Sbjct: 66 SDKARYDREMKNY 78
Score = 48 (22.0 bits), Expect = 0.00034, Sum P(2) = 0.00034
Identities = 10/32 (31%), Positives = 19/32 (59%)
Query: 149 RETGKPKKPGNSFYLFIKDNIDK--KEYEGKS 178
++ PK+P ++F+LF ++ K E+ G S
Sbjct: 90 KDPNAPKRPPSAFFLFCSEHRPKIKSEHPGLS 121
>RGD|1564519 [details] [associations]
symbol:RGD1564519 "similar to High mobility group protein 2
(HMG-2)" species:10116 "Rattus norvegicus" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
REFSEQ:XM_001063065 Ncbi:XP_001063065
Length = 210
Score = 108 (43.1 bits), Expect = 8.0e-05, P = 8.0e-05
Identities = 22/71 (30%), Positives = 37/71 (52%)
Query: 46 PEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAKE 105
P PK+P + +F F + R KI +P + I + K + E W + +K+ E + AK
Sbjct: 92 PNAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 151
Query: 106 KEIYAQNVKKY 116
KE Y +++ Y
Sbjct: 152 KEKYEKDIAAY 162
Score = 91 (37.1 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 20/73 (27%), Positives = 36/73 (49%)
Query: 46 PEKPKKPLTPYFKFQGQIRNKIMERNPN--IKIIEVTKLVSEEWKKIGEAEKKRLENEYA 103
P KP+ ++ Y F R + +++P+ + E +K SE WK + EK + E+
Sbjct: 6 PNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDLAK 65
Query: 104 KEKEIYAQNVKKY 116
+K Y + +K Y
Sbjct: 66 SDKARYDREMKNY 78
Score = 48 (22.0 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 10/32 (31%), Positives = 19/32 (59%)
Query: 149 RETGKPKKPGNSFYLFIKDNIDK--KEYEGKS 178
++ PK+P ++F+LF ++ K E+ G S
Sbjct: 90 KDPNAPKRPPSAFFLFCSEHRPKIKSEHPGLS 121
>RGD|69291 [details] [associations]
symbol:Hmgb2 "high mobility group box 2" species:10116 "Rattus
norvegicus" [GO:0000793 "condensed chromosome" evidence=ISO;ISS]
[GO:0001938 "positive regulation of endothelial cell proliferation"
evidence=ISO] [GO:0003677 "DNA binding" evidence=ISO] [GO:0003684
"damaged DNA binding" evidence=ISO] [GO:0003690 "double-stranded DNA
binding" evidence=TAS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISO] [GO:0005615
"extracellular space" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO;ISS;IDA] [GO:0005737 "cytoplasm" evidence=ISO;ISS]
[GO:0006288 "base-excision repair, DNA ligation" evidence=ISO;ISS]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=ISO;ISS] [GO:0007049 "cell cycle" evidence=IEP]
[GO:0007283 "spermatogenesis" evidence=ISO] [GO:0007289 "spermatid
nucleus differentiation" evidence=ISO] [GO:0007399 "nervous system
development" evidence=IDA] [GO:0008289 "lipid binding" evidence=IDA]
[GO:0008301 "DNA binding, bending" evidence=ISO;ISS] [GO:0008584
"male gonad development" evidence=ISO] [GO:0019904 "protein domain
specific binding" evidence=ISO] [GO:0031100 "organ regeneration"
evidence=IEP] [GO:0031493 "nucleosomal histone binding"
evidence=IDA] [GO:0032075 "positive regulation of nuclease activity"
evidence=ISO] [GO:0042056 "chemoattractant activity" evidence=ISO]
[GO:0043066 "negative regulation of apoptotic process" evidence=ISO]
[GO:0043234 "protein complex" evidence=ISO] [GO:0043388 "positive
regulation of DNA binding" evidence=ISO] [GO:0044212 "transcription
regulatory region DNA binding" evidence=ISO] [GO:0045648 "positive
regulation of erythrocyte differentiation" evidence=ISO] [GO:0045654
"positive regulation of megakaryocyte differentiation" evidence=ISO]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=ISO] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=ISO;IMP] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0048471 "perinuclear region of cytoplasm" evidence=ISO;ISS]
[GO:0048545 "response to steroid hormone stimulus" evidence=ISO]
[GO:0050786 "RAGE receptor binding" evidence=ISO] [GO:0050918
"positive chemotaxis" evidence=ISO] [GO:0051054 "positive regulation
of DNA metabolic process" evidence=IMP] [GO:0060326 "cell
chemotaxis" evidence=ISO] [GO:0071222 "cellular response to
lipopolysaccharide" evidence=ISO] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 RGD:69291
GO:GO:0005634 GO:GO:0048471 GO:GO:0045893 GO:GO:0007399
GO:GO:0031100 GO:GO:0006357 eggNOG:COG5648 GO:GO:0008301
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0007049 GO:GO:0008289 GO:GO:0003690 GO:GO:0000793
GO:GO:0051054 GO:GO:0031493 Pfam:PF09011 HOGENOM:HOG000197861
KO:K11295 GeneTree:ENSGT00560000076717 HOVERGEN:HBG009000
GO:GO:0006288 CTD:3148 OMA:KIKNDHP OrthoDB:EOG4TTGK2 EMBL:D84418
EMBL:BC078866 EMBL:BC089854 EMBL:BC107455 IPI:IPI00876582
RefSeq:NP_058883.1 RefSeq:XP_001063065.2 RefSeq:XP_573272.3
UniGene:Rn.218982 UniGene:Rn.2874 ProteinModelPortal:P52925
SMR:P52925 STRING:P52925 DNASU:29395 Ensembl:ENSRNOT00000017635
Ensembl:ENSRNOT00000046874 GeneID:29395 GeneID:498072 KEGG:rno:29395
KEGG:rno:498072 UCSC:RGD:69291 CTD:498072 InParanoid:P52925
NextBio:609027 Genevestigator:P52925 GermOnline:ENSRNOG00000013167
GermOnline:ENSRNOG00000030313 Uniprot:P52925
Length = 210
Score = 108 (43.1 bits), Expect = 8.0e-05, P = 8.0e-05
Identities = 22/71 (30%), Positives = 37/71 (52%)
Query: 46 PEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAKE 105
P PK+P + +F F + R KI +P + I + K + E W + +K+ E + AK
Sbjct: 92 PNAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 151
Query: 106 KEIYAQNVKKY 116
KE Y +++ Y
Sbjct: 152 KEKYEKDIAAY 162
Score = 91 (37.1 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 20/73 (27%), Positives = 36/73 (49%)
Query: 46 PEKPKKPLTPYFKFQGQIRNKIMERNPN--IKIIEVTKLVSEEWKKIGEAEKKRLENEYA 103
P KP+ ++ Y F R + +++P+ + E +K SE WK + EK + E+
Sbjct: 6 PNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDLAK 65
Query: 104 KEKEIYAQNVKKY 116
+K Y + +K Y
Sbjct: 66 SDKARYDREMKNY 78
Score = 48 (22.0 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 10/32 (31%), Positives = 19/32 (59%)
Query: 149 RETGKPKKPGNSFYLFIKDNIDK--KEYEGKS 178
++ PK+P ++F+LF ++ K E+ G S
Sbjct: 90 KDPNAPKRPPSAFFLFCSEHRPKIKSEHPGLS 121
>UNIPROTKB|Q0P5K4 [details] [associations]
symbol:TOX4 "TOX high mobility group box family member 4"
species:9913 "Bos taurus" [GO:0072357 "PTW/PP1 phosphatase complex"
evidence=ISS] [GO:0005634 "nucleus" evidence=IEA] [GO:0000785
"chromatin" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634 GO:GO:0003677
GO:GO:0000785 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GeneTree:ENSGT00560000076898 GO:GO:0072357
HOGENOM:HOG000230949 eggNOG:NOG284736 EMBL:BC119929 IPI:IPI00689806
RefSeq:NP_001069175.1 UniGene:Bt.51979 ProteinModelPortal:Q0P5K4
SMR:Q0P5K4 Ensembl:ENSBTAT00000020149 GeneID:515314 KEGG:bta:515314
CTD:9878 HOVERGEN:HBG051013 InParanoid:Q0P5K4 OMA:PPTLKMQ
OrthoDB:EOG4JT05P NextBio:20871764 ArrayExpress:Q0P5K4
Uniprot:Q0P5K4
Length = 619
Score = 113 (44.8 bits), Expect = 9.8e-05, P = 9.8e-05
Identities = 27/91 (29%), Positives = 46/91 (50%)
Query: 30 VTTAGLKQQT--SQPLSIPEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEW 87
V AG KQ+ + P +P+KP++ Y F + I +NPN EV+K+V+ W
Sbjct: 202 VVEAGKKQKAPKKRKKKDPNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMW 261
Query: 88 KKIGEAEKKRLENEYAKEKEIYAQNVKKYHD 118
+GE +K+ + + K+ Y + + Y D
Sbjct: 262 DSLGEEQKQVYKRKTEAAKKEYLKALAAYKD 292
>ZFIN|ZDB-GENE-980526-102 [details] [associations]
symbol:sox19a "SRY-box containing gene 19a"
species:7955 "Danio rerio" [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=IDA] [GO:0005667
"transcription factor complex" evidence=IC] [GO:0051091 "positive
regulation of sequence-specific DNA binding transcription factor
activity" evidence=IDA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0007275
"multicellular organismal development" evidence=IEA] [GO:0030154
"cell differentiation" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0007399 "nervous system
development" evidence=IEA] InterPro:IPR009071 Pfam:PF00505
ZFIN:ZDB-GENE-980526-102 GO:GO:0051091 GO:GO:0005667
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GeneTree:ENSGT00690000101940 EMBL:BX119902 InterPro:IPR022097
Pfam:PF12336 IPI:IPI00931891 Ensembl:ENSDART00000013309
ArrayExpress:E7F9F4 Bgee:E7F9F4 Uniprot:E7F9F4
Length = 314
Score = 110 (43.8 bits), Expect = 0.00010, P = 0.00010
Identities = 27/84 (32%), Positives = 50/84 (59%)
Query: 36 KQQTSQPLSIPEKPKKPLTPYFKF-QGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAE 94
+QQ+S P+ +K K+P+ + + +GQ R K+ + NP + E++K + EWK + +AE
Sbjct: 41 QQQSSDPM---DKVKRPMNAFMVWSRGQ-RRKMAQENPKMHNSEISKRLGAEWKLLTDAE 96
Query: 95 KKRLENEYAKEKEIYAQNVKKYHD 118
K+ +E K + A ++K+Y D
Sbjct: 97 KRPFIDE---AKRLRALHMKEYPD 117
>UNIPROTKB|F1NPU8 [details] [associations]
symbol:HMGB2 "High mobility group protein B2" species:9031
"Gallus gallus" [GO:0005634 "nucleus" evidence=IEA] [GO:0000793
"condensed chromosome" evidence=IEA] [GO:0001938 "positive
regulation of endothelial cell proliferation" evidence=IEA]
[GO:0003684 "damaged DNA binding" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0005615 "extracellular space" evidence=IEA]
[GO:0006288 "base-excision repair, DNA ligation" evidence=IEA]
[GO:0007289 "spermatid nucleus differentiation" evidence=IEA]
[GO:0008301 "DNA binding, bending" evidence=IEA] [GO:0008584 "male
gonad development" evidence=IEA] [GO:0019904 "protein domain
specific binding" evidence=IEA] [GO:0032075 "positive regulation of
nuclease activity" evidence=IEA] [GO:0042056 "chemoattractant
activity" evidence=IEA] [GO:0043234 "protein complex" evidence=IEA]
[GO:0043388 "positive regulation of DNA binding" evidence=IEA]
[GO:0044212 "transcription regulatory region DNA binding"
evidence=IEA] [GO:0045648 "positive regulation of erythrocyte
differentiation" evidence=IEA] [GO:0045654 "positive regulation of
megakaryocyte differentiation" evidence=IEA] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0048471 "perinuclear
region of cytoplasm" evidence=IEA] [GO:0048545 "response to steroid
hormone stimulus" evidence=IEA] [GO:0050786 "RAGE receptor binding"
evidence=IEA] [GO:0060326 "cell chemotaxis" evidence=IEA]
[GO:0071222 "cellular response to lipopolysaccharide" evidence=IEA]
InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
GO:GO:0048471 GO:GO:0045892 GO:GO:0005615 GO:GO:0043234
GO:GO:0005730 GO:GO:0003684 GO:GO:0001938 GO:GO:0045944
GO:GO:0003700 GO:GO:0048545 GO:GO:0008301 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0044212
GO:GO:0045648 GO:GO:0045654 GO:GO:0060326 GO:GO:0000793
GO:GO:0042056 GO:GO:0043388 Pfam:PF09011 GO:GO:0032075
GeneTree:ENSGT00560000076717 GO:GO:0006288 OMA:KIKNDHP
IPI:IPI00579203 EMBL:AADN02008951 Ensembl:ENSGALT00000017483
Uniprot:F1NPU8
Length = 207
Score = 107 (42.7 bits), Expect = 0.00011, P = 0.00011
Identities = 23/79 (29%), Positives = 40/79 (50%)
Query: 46 PEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAKE 105
P PK+P + +F F + R KI +P + I + K + E W + +K+ E + AK
Sbjct: 92 PNAPKRPPSAFFLFCSEHRPKIKNDHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 151
Query: 106 KEIYAQNVKKYHDELTPEA 124
KE Y +++ Y + +A
Sbjct: 152 KEKYEKDIAAYRAKSKSDA 170
Score = 88 (36.0 bits), Expect = 0.00089, Sum P(2) = 0.00089
Identities = 22/74 (29%), Positives = 38/74 (51%)
Query: 46 PEKPKKPLTPYFKFQGQIRNKIMERNPN--IKIIEVTKLVSEEWKKIGEAEKKRLENEYA 103
P KP+ ++ Y F R + +++P+ + E ++ SE WK + EK + E E A
Sbjct: 6 PNKPRGKMSSYAYFVQTCREEHKKKHPDSSVNFAEFSRKCSERWKTMSSKEKGKFE-EMA 64
Query: 104 K-EKEIYAQNVKKY 116
K +K Y + +K Y
Sbjct: 65 KGDKARYDREMKNY 78
Score = 45 (20.9 bits), Expect = 0.00089, Sum P(2) = 0.00089
Identities = 7/23 (30%), Positives = 15/23 (65%)
Query: 149 RETGKPKKPGNSFYLFIKDNIDK 171
++ PK+P ++F+LF ++ K
Sbjct: 90 KDPNAPKRPPSAFFLFCSEHRPK 112
>UNIPROTKB|P23497 [details] [associations]
symbol:SP100 "Nuclear autoantigen Sp-100" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0019048
"virus-host interaction" evidence=IEA] [GO:0019904 "protein domain
specific binding" evidence=IPI] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0016605 "PML
body" evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0019221 "cytokine-mediated signaling pathway" evidence=TAS]
[GO:0060333 "interferon-gamma-mediated signaling pathway"
evidence=IC;TAS] [GO:0005730 "nucleolus" evidence=IMP;IDA]
[GO:0032526 "response to retinoic acid" evidence=IDA] [GO:0034097
"response to cytokine stimulus" evidence=IDA] [GO:0034399 "nuclear
periphery" evidence=IDA] [GO:0048384 "retinoic acid receptor
signaling pathway" evidence=IC] [GO:0003713 "transcription
coactivator activity" evidence=IDA] [GO:0051091 "positive
regulation of sequence-specific DNA binding transcription factor
activity" evidence=IDA] [GO:0006978 "DNA damage response, signal
transduction by p53 class mediator resulting in transcription of
p21 class mediator" evidence=IDA] [GO:0034340 "response to type I
interferon" evidence=IDA;IMP] [GO:0034341 "response to
interferon-gamma" evidence=IDA;IMP] [GO:0060337 "type I
interferon-mediated signaling pathway" evidence=IC] [GO:0070087
"chromo shadow domain binding" evidence=IPI] [GO:0042802 "identical
protein binding" evidence=IPI] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IMP;IDA] [GO:0019900 "kinase
binding" evidence=IPI] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IDA;IMP] [GO:0003714
"transcription corepressor activity" evidence=IDA] [GO:0043392
"negative regulation of DNA binding" evidence=IDA] [GO:0043433
"negative regulation of sequence-specific DNA binding transcription
factor activity" evidence=IDA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0051271 "negative regulation of cellular component movement"
evidence=IMP] [GO:0032897 "negative regulation of viral
transcription" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0042803 "protein homodimerization activity" evidence=IPI]
[GO:0008134 "transcription factor binding" evidence=IPI]
InterPro:IPR009071 InterPro:IPR000770 InterPro:IPR004865
Pfam:PF01342 Pfam:PF03172 PROSITE:PS50864 PROSITE:PS51414
SMART:SM00258 Pfam:PF00505 GO:GO:0005737 Reactome:REACT_6900
GO:GO:0003714 GO:GO:0045892 GO:GO:0019048 GO:GO:0045893
GO:GO:0060333 GO:GO:0060337 GO:GO:0051091 GO:GO:0005730
GO:GO:0003677 GO:GO:0016605 GO:GO:0034097 GO:GO:0000122
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0003713 GO:GO:0032526 GO:GO:0051271 GO:GO:0043433
Gene3D:3.10.390.10 InterPro:IPR010919 SUPFAM:SSF63763 GO:GO:0048384
GO:GO:0034399 GO:GO:0006978 Pfam:PF09011 GO:GO:0043392
OrthoDB:EOG44QT09 GO:GO:0034340 GO:GO:0032897 EMBL:AC009949
EMBL:U36501 EMBL:AF056322 EMBL:M60618 EMBL:AF255565 EMBL:AK293373
EMBL:AC010149 EMBL:BC011562 EMBL:X95472 EMBL:L79986 EMBL:L79987
EMBL:L79988 EMBL:AF076675 EMBL:AF378670 IPI:IPI00011675
IPI:IPI00218324 IPI:IPI00218325 IPI:IPI00218326 IPI:IPI00218327
IPI:IPI00917048 IPI:IPI00917345 PIR:A37244 RefSeq:NP_001073860.1
RefSeq:NP_001193630.1 RefSeq:NP_001193631.1 RefSeq:NP_001193632.1
RefSeq:NP_001193633.1 RefSeq:NP_003104.2 UniGene:Hs.369056 PDB:1H5P
PDBsum:1H5P ProteinModelPortal:P23497 SMR:P23497 DIP:DIP-5983N
IntAct:P23497 MINT:MINT-1188807 STRING:P23497 PhosphoSite:P23497
DMDM:13878931 PaxDb:P23497 PRIDE:P23497 Ensembl:ENST00000264052
Ensembl:ENST00000340126 Ensembl:ENST00000409341
Ensembl:ENST00000409897 Ensembl:ENST00000427101 GeneID:6672
KEGG:hsa:6672 UCSC:uc002vqq.2 UCSC:uc002vqt.3 UCSC:uc002vqu.1
UCSC:uc010zmb.2 CTD:6672 GeneCards:GC02P231280 HGNC:HGNC:11206
HPA:HPA016707 HPA:HPA017384 MIM:604585 neXtProt:NX_P23497
PharmGKB:PA36043 eggNOG:NOG249894 HOVERGEN:HBG057632 KO:K15413
OMA:TESCEQV ChiTaRS:SP100 EvolutionaryTrace:P23497 GenomeRNAi:6672
NextBio:26015 ArrayExpress:P23497 Bgee:P23497 CleanEx:HS_SP100
Genevestigator:P23497 GermOnline:ENSG00000067066 Uniprot:P23497
Length = 879
Score = 113 (44.8 bits), Expect = 0.00015, P = 0.00015
Identities = 25/89 (28%), Positives = 43/89 (48%)
Query: 36 KQQTSQPLSIPEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEK 95
K + + P PK+P +F F + R KI +P + I +V K ++ W A+K
Sbjct: 756 KGEKKKKFKDPNAPKRPPLAFFLFCSEYRPKIKGEHPGLSIDDVVKKLAGMWNNTAAADK 815
Query: 96 KRLENEYAKEKEIYAQNVKKYHDELTPEA 124
+ E + AK KE Y +++ Y + P +
Sbjct: 816 QFYEKKAAKLKEKYKKDIAAYRAKGKPNS 844
>MGI|MGI:1915389 [details] [associations]
symbol:Tox4 "TOX high mobility group box family member 4"
species:10090 "Mus musculus" [GO:0000785 "chromatin" evidence=ISO]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0072357 "PTW/PP1 phosphatase complex" evidence=ISO]
InterPro:IPR009071 MGI:MGI:1915389 Pfam:PF00505 GO:GO:0005634
GO:GO:0003677 GO:GO:0000785 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GeneTree:ENSGT00560000076898
GO:GO:0072357 eggNOG:NOG284736 CTD:9878 HOVERGEN:HBG051013
OMA:PPTLKMQ OrthoDB:EOG4JT05P ChiTaRS:TOX4 EMBL:AF228408
EMBL:AK019980 EMBL:AK088144 EMBL:AK147023 EMBL:AK147834
EMBL:BC050091 IPI:IPI00121251 RefSeq:NP_075923.2 UniGene:Mm.246237
ProteinModelPortal:Q8BU11 SMR:Q8BU11 IntAct:Q8BU11
PhosphoSite:Q8BU11 PaxDb:Q8BU11 PRIDE:Q8BU11
Ensembl:ENSMUST00000022766 GeneID:268741 KEGG:mmu:268741
InParanoid:Q3UGN7 NextBio:392465 Bgee:Q8BU11 CleanEx:MM_TOX4
Genevestigator:Q8BU11 GermOnline:ENSMUSG00000016831 Uniprot:Q8BU11
Length = 619
Score = 111 (44.1 bits), Expect = 0.00021, P = 0.00021
Identities = 29/103 (28%), Positives = 50/103 (48%)
Query: 30 VTTAGLKQQT--SQPLSIPEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEW 87
V G KQ+ + P +P+KP++ Y F + I +NPN EV+K+V+ W
Sbjct: 202 VVETGKKQKAPKKRKKKDPNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMW 261
Query: 88 KKIGEAEKKRLENEYAKEKEIYAQNVKKYHD----ELTPEAIE 126
+GE +K+ + + K+ Y + + Y D + T E +E
Sbjct: 262 DSLGEEQKQVYKRKTEAAKKEYLKALAAYKDNQECQATVETVE 304
>RGD|708449 [details] [associations]
symbol:Tox4 "TOX high mobility group box family member 4"
species:10116 "Rattus norvegicus" [GO:0000785 "chromatin"
evidence=IEA;ISO] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0072357 "PTW/PP1
phosphatase complex" evidence=IEA;ISO;ISS] [GO:0005730 "nucleolus"
evidence=ISO] InterPro:IPR009071 Pfam:PF00505 RGD:708449
GO:GO:0005634 GO:GO:0003677 GO:GO:0000785 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0072357
HOGENOM:HOG000230949 eggNOG:NOG284736 HOVERGEN:HBG051013
OrthoDB:EOG4JT05P EMBL:AF267197 IPI:IPI00201166 UniGene:Rn.22195
ProteinModelPortal:Q99PM1 SMR:Q99PM1 PhosphoSite:Q99PM1
PRIDE:Q99PM1 UCSC:RGD:708449 InParanoid:Q99PM1 ArrayExpress:Q99PM1
Genevestigator:Q99PM1 GermOnline:ENSRNOG00000012844 Uniprot:Q99PM1
Length = 619
Score = 111 (44.1 bits), Expect = 0.00021, P = 0.00021
Identities = 29/103 (28%), Positives = 50/103 (48%)
Query: 30 VTTAGLKQQT--SQPLSIPEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEW 87
V G KQ+ + P +P+KP++ Y F + I +NPN EV+K+V+ W
Sbjct: 202 VVETGKKQKAPKKRKKKDPNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMW 261
Query: 88 KKIGEAEKKRLENEYAKEKEIYAQNVKKYHD----ELTPEAIE 126
+GE +K+ + + K+ Y + + Y D + T E +E
Sbjct: 262 DSLGEEQKQVYKRKTEAAKKEYLKALAAYKDNQECQATVETVE 304
>UNIPROTKB|Q5T7C0 [details] [associations]
symbol:HMGB1 "High mobility group protein B1" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0001654
"eye development" evidence=IEA] [GO:0005125 "cytokine activity"
evidence=IEA] [GO:0005615 "extracellular space" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0010858 "calcium-dependent protein kinase
regulator activity" evidence=IEA] [GO:0030295 "protein kinase
activator activity" evidence=IEA] [GO:0030324 "lung development"
evidence=IEA] [GO:0043005 "neuron projection" evidence=IEA]
[GO:0045639 "positive regulation of myeloid cell differentiation"
evidence=IEA] [GO:0045819 "positive regulation of glycogen
catabolic process" evidence=IEA] [GO:0045944 "positive regulation
of transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0051384 "response to glucocorticoid stimulus" evidence=IEA]
[GO:2000426 "negative regulation of apoptotic cell clearance"
evidence=IEA] InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353
GO:GO:0005634 GO:GO:0005737 GO:GO:0005615 GO:GO:0003677
GO:GO:0030324 GO:GO:0045944 GO:GO:0051384 GO:GO:0043005
GO:GO:0045860 GO:GO:0030295 eggNOG:COG5648 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0045819
GO:GO:0001654 Pfam:PF09011 GO:GO:0045639 EMBL:AL353648
UniGene:Hs.434102 UniGene:Hs.593339 UniGene:Hs.596078
UniGene:Hs.741195 HGNC:HGNC:4983 ChiTaRS:HMGB1 GO:GO:0010858
GO:GO:2000426 EMBL:AL138681 IPI:IPI00643746 SMR:Q5T7C0
Ensembl:ENST00000398908 Uniprot:Q5T7C0
Length = 97
Score = 89 (36.4 bits), Expect = 0.00034, P = 0.00034
Identities = 20/73 (27%), Positives = 37/73 (50%)
Query: 46 PEKPKKPLTPYFKFQGQIRNKIMERNPN--IKIIEVTKLVSEEWKKIGEAEKKRLENEYA 103
P+KP+ ++ Y F R + +++P+ + E +K SE WK + EK + E+
Sbjct: 6 PKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAK 65
Query: 104 KEKEIYAQNVKKY 116
+K Y + +K Y
Sbjct: 66 ADKARYEREMKTY 78
>ZFIN|ZDB-GENE-050417-290 [details] [associations]
symbol:hmgb3b "high-mobility group box 3b"
species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
ZFIN:ZDB-GENE-050417-290 GO:GO:0005634 GO:GO:0003677 eggNOG:COG5648
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 HOGENOM:HOG000197861 HOVERGEN:HBG009000 KO:K11296
EMBL:BC093186 IPI:IPI00511002 RefSeq:NP_001017769.1
UniGene:Dr.75880 ProteinModelPortal:Q567G0 SMR:Q567G0 GeneID:550466
KEGG:dre:550466 CTD:550466 InParanoid:Q567G0 OrthoDB:EOG4TB4CM
NextBio:20879710 ArrayExpress:Q567G0 Uniprot:Q567G0
Length = 198
Score = 95 (38.5 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 22/74 (29%), Positives = 37/74 (50%)
Query: 46 PEKPKKPLTPYFKFQGQIRNKIMERNPNIKI--IEVTKLVSEEWKKIGEAEKKRLENEYA 103
P KPK ++ Y F R + ++NP + + E +K SE WK + EK + E+
Sbjct: 6 PGKPKGKMSAYAYFVKTCREEHNKKNPGVTVNFSEFSKKCSERWKTMSPKEKTKFEDLAK 65
Query: 104 KEKEIYAQNVKKYH 117
++K Y Q + Y+
Sbjct: 66 QDKARYDQEMMHYN 79
Score = 38 (18.4 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 5/16 (31%), Positives = 11/16 (68%)
Query: 149 RETGKPKKPGNSFYLF 164
++ P++P + F+LF
Sbjct: 89 KDPNAPRRPPSGFFLF 104
>WB|WBGene00007042 [details] [associations]
symbol:pbrm-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0040007
"growth" evidence=IMP] [GO:0040011 "locomotion" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0010171
"body morphogenesis" evidence=IMP] InterPro:IPR009071
InterPro:IPR001025 InterPro:IPR001487 InterPro:IPR007087
InterPro:IPR015880 Pfam:PF00439 Pfam:PF01426 PRINTS:PR00503
PROSITE:PS00028 PROSITE:PS50014 PROSITE:PS51038 SMART:SM00297
SMART:SM00355 SMART:SM00439 Pfam:PF00505 GO:GO:0009792
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0003677
GO:GO:0008270 GO:GO:0010171 GO:GO:0040011 GO:GO:0005622
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0040035 Gene3D:1.20.920.10 SUPFAM:SSF47370 EMBL:Z72517
HSSP:Q03330 EMBL:Z72503 KO:K11757 GeneTree:ENSGT00390000003017
PIR:T19481 RefSeq:NP_001021008.1 ProteinModelPortal:G5EEY5
SMR:G5EEY5 PRIDE:G5EEY5 EnsemblMetazoa:C26C6.1a GeneID:172504
KEGG:cel:CELE_C26C6.1 CTD:172504 WormBase:C26C6.1a OMA:IQNPIDM
NextBio:875801 Uniprot:G5EEY5
Length = 1883
Score = 113 (44.8 bits), Expect = 0.00037, P = 0.00037
Identities = 23/58 (39%), Positives = 33/58 (56%)
Query: 42 PLSIPEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLE 99
P+ P K K + Y F ++R +IM NP+ EV+K+V EWKK+ E +KK E
Sbjct: 1443 PIMTP-KAVKSKSGYILFSAEVRKRIMHENPDAGFGEVSKIVGIEWKKLSEEQKKHYE 1499
>POMBASE|SPBC28F2.11 [details] [associations]
symbol:SPBC28F2.11 "HMG box protein" species:4896
"Schizosaccharomyces pombe" [GO:0003677 "DNA binding" evidence=ISM]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005794 "Golgi apparatus"
evidence=IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=NAS] [GO:0043066 "negative regulation of
apoptotic process" evidence=IGI] InterPro:IPR009071
PomBase:SPBC28F2.11 GO:GO:0005794 GO:GO:0043066 GO:GO:0006355
GO:GO:0003677 EMBL:CU329671 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 Pfam:PF09011 HSSP:P63159
OrthoDB:EOG4RV61X PIR:T40054 RefSeq:NP_595672.1
ProteinModelPortal:Q9USU7 STRING:Q9USU7 EnsemblFungi:SPBC28F2.11.1
GeneID:2540337 KEGG:spo:SPBC28F2.11 eggNOG:NOG246329
NextBio:20801465 Uniprot:Q9USU7
Length = 310
Score = 106 (42.4 bits), Expect = 0.00041, P = 0.00041
Identities = 23/76 (30%), Positives = 43/76 (56%)
Query: 46 PEKPKKPLTPYFKFQ----GQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENE 101
P +PK+P + Y FQ +I+ + E++ ++K EV K + E+W + E ++K E E
Sbjct: 114 PAQPKRPPSAYNLFQKNQRSEIKESLGEKSNDVK--EVNKAMHEKWGSLSEDDRKTYEEE 171
Query: 102 YAKEKEIYAQNVKKYH 117
+K +E Y + + Y+
Sbjct: 172 ASKLREAYEEEMAAYN 187
>UNIPROTKB|P26584 [details] [associations]
symbol:HMGB2 "High mobility group protein B2" species:9031
"Gallus gallus" [GO:0008301 "DNA binding, bending" evidence=ISS]
[GO:0006288 "base-excision repair, DNA ligation" evidence=ISS]
[GO:0000793 "condensed chromosome" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0048471 "perinuclear region of cytoplasm" evidence=ISS]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=ISS] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0048471
GO:GO:0006357 GO:GO:0008301 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0000793 Pfam:PF09011
HOGENOM:HOG000197861 KO:K11295 HOVERGEN:HBG009000 GO:GO:0006288
CTD:3148 OrthoDB:EOG4TTGK2 EMBL:M83235 EMBL:M80574 IPI:IPI00579203
PIR:JC1114 PIR:JC1129 RefSeq:NP_990817.1 UniGene:Gga.4061
ProteinModelPortal:P26584 SMR:P26584 STRING:P26584 PRIDE:P26584
GeneID:396482 KEGG:gga:396482 eggNOG:NOG320947 InParanoid:P26584
NextBio:20816521 Uniprot:P26584
Length = 207
Score = 103 (41.3 bits), Expect = 0.00041, P = 0.00041
Identities = 23/79 (29%), Positives = 40/79 (50%)
Query: 46 PEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAKE 105
P PK+P + +F F + R KI +P + I + K + E W + +K+ E + AK
Sbjct: 92 PNAPKRPPSAFFLFCSEHRPKIKNDHPGLSIGDTAKKLGEMWSEQLAKDKQPYEQKAAKL 151
Query: 106 KEIYAQNVKKYHDELTPEA 124
KE Y +++ Y + +A
Sbjct: 152 KEKYEKDIAAYRAKSKSDA 170
Score = 88 (36.0 bits), Expect = 0.00089, Sum P(2) = 0.00089
Identities = 22/74 (29%), Positives = 38/74 (51%)
Query: 46 PEKPKKPLTPYFKFQGQIRNKIMERNPN--IKIIEVTKLVSEEWKKIGEAEKKRLENEYA 103
P KP+ ++ Y F R + +++P+ + E ++ SE WK + EK + E E A
Sbjct: 6 PNKPRGKMSSYAYFVQTCREEHKKKHPDSSVNFAEFSRKCSERWKTMSSKEKGKFE-EMA 64
Query: 104 K-EKEIYAQNVKKY 116
K +K Y + +K Y
Sbjct: 65 KGDKARYDREMKNY 78
Score = 45 (20.9 bits), Expect = 0.00089, Sum P(2) = 0.00089
Identities = 7/23 (30%), Positives = 15/23 (65%)
Query: 149 RETGKPKKPGNSFYLFIKDNIDK 171
++ PK+P ++F+LF ++ K
Sbjct: 90 KDPNAPKRPPSAFFLFCSEHRPK 112
>UNIPROTKB|E2R3H4 [details] [associations]
symbol:SOX15 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0048627
"myoblast development" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0045843 "negative regulation of striated muscle
tissue development" evidence=IEA] [GO:0043403 "skeletal muscle
tissue regeneration" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634
GO:GO:0005737 GO:GO:0003677 GO:GO:0045944 GO:GO:0003682
GO:GO:0045843 GO:GO:0000122 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GeneTree:ENSGT00690000101940
GO:GO:0043403 GO:GO:0048627 CTD:6665 KO:K09271 OMA:PQSDPRL
EMBL:AAEX03003621 RefSeq:XP_003434661.1 ProteinModelPortal:E2R3H4
Ensembl:ENSCAFT00000026387 GeneID:100688349 KEGG:cfa:100688349
Uniprot:E2R3H4
Length = 233
Score = 104 (41.7 bits), Expect = 0.00043, P = 0.00043
Identities = 22/78 (28%), Positives = 44/78 (56%)
Query: 42 PLSIP-EKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLEN 100
P ++P EK K+P+ + + R ++ ++NP + E++K + +WK +GE EK+
Sbjct: 41 PGALPLEKVKRPMNAFMVWSSAQRRQMAQQNPKMHNSEISKRLGAQWKLLGEDEKRPFVE 100
Query: 101 EYAKEKEIYAQNVKKYHD 118
E K + A++++ Y D
Sbjct: 101 E---AKRLRARHLRDYPD 115
>UNIPROTKB|F1REZ8 [details] [associations]
symbol:TOX3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0051219 "phosphoprotein binding" evidence=IEA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0043524 "negative regulation of neuron apoptotic
process" evidence=IEA] [GO:0042803 "protein homodimerization
activity" evidence=IEA] [GO:0034056 "estrogen response element
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] InterPro:IPR009071 Pfam:PF00505 GO:GO:0045893
GO:GO:0043524 GO:GO:0003682 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0034056
GeneTree:ENSGT00560000076898 OMA:HSLIMRS EMBL:CU442721
EMBL:CU457410 Ensembl:ENSSSCT00000003136 Uniprot:F1REZ8
Length = 542
Score = 108 (43.1 bits), Expect = 0.00050, P = 0.00050
Identities = 23/79 (29%), Positives = 41/79 (51%)
Query: 46 PEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAKE 105
P +P+KP++ Y F + I +NPN EV+K+V+ W +GE +K+ + +
Sbjct: 223 PNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDSLGEEQKQVYKRKTEAA 282
Query: 106 KEIYAQNVKKYHDELTPEA 124
K+ Y + + Y L +A
Sbjct: 283 KKEYLKALAAYRASLVSKA 301
>UNIPROTKB|E1BKT2 [details] [associations]
symbol:TOX3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0051219 "phosphoprotein binding" evidence=IEA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0043524 "negative regulation of neuron apoptotic
process" evidence=IEA] [GO:0042803 "protein homodimerization
activity" evidence=IEA] [GO:0034056 "estrogen response element
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] InterPro:IPR009071 Pfam:PF00505 GO:GO:0045893
GO:GO:0043524 GO:GO:0003682 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0034056
GeneTree:ENSGT00560000076898 CTD:27324 OMA:HSLIMRS
EMBL:DAAA02046427 EMBL:DAAA02046428 EMBL:DAAA02046429
EMBL:DAAA02046430 IPI:IPI00715207 RefSeq:XP_002694823.1
RefSeq:XP_885168.3 ProteinModelPortal:E1BKT2
Ensembl:ENSBTAT00000000539 GeneID:539135 KEGG:bta:539135
NextBio:20877802 Uniprot:E1BKT2
Length = 556
Score = 108 (43.1 bits), Expect = 0.00052, P = 0.00052
Identities = 23/79 (29%), Positives = 41/79 (51%)
Query: 46 PEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAKE 105
P +P+KP++ Y F + I +NPN EV+K+V+ W +GE +K+ + +
Sbjct: 252 PNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDSLGEEQKQVYKRKTEAA 311
Query: 106 KEIYAQNVKKYHDELTPEA 124
K+ Y + + Y L +A
Sbjct: 312 KKEYLKALAAYRASLVSKA 330
>MGI|MGI:3039593 [details] [associations]
symbol:Tox3 "TOX high mobility group box family member 3"
species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=ISO]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=IEA] [GO:0019722 "calcium-mediated signaling"
evidence=ISO] [GO:0034056 "estrogen response element binding"
evidence=ISO] [GO:0042803 "protein homodimerization activity"
evidence=ISO] [GO:0043524 "negative regulation of neuron apoptotic
process" evidence=ISO] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0051219
"phosphoprotein binding" evidence=ISO] InterPro:IPR009071
PROSITE:PS00353 MGI:MGI:3039593 Pfam:PF00505 GO:GO:0005634
GO:GO:0006915 GO:GO:0045893 GO:GO:0042803 GO:GO:0043524
GO:GO:0006351 GO:GO:0003682 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0034056
GeneTree:ENSGT00560000076898 HOGENOM:HOG000230949
HOVERGEN:HBG051183 HSSP:Q66JW3 CTD:27324 eggNOG:NOG284736
OMA:HSLIMRS ChiTaRS:TOX3 EMBL:AK082602 EMBL:BC052044
IPI:IPI00330486 RefSeq:NP_766501.2 UniGene:Mm.302755
ProteinModelPortal:Q80W03 SMR:Q80W03 STRING:Q80W03
PhosphoSite:Q80W03 PaxDb:Q80W03 PRIDE:Q80W03
Ensembl:ENSMUST00000109621 GeneID:244579 KEGG:mmu:244579
UCSC:uc009msb.2 InParanoid:Q80W03 OrthoDB:EOG4K0QNS NextBio:386323
Bgee:Q80W03 CleanEx:MM_TOX3 Genevestigator:Q80W03 Uniprot:Q80W03
Length = 575
Score = 108 (43.1 bits), Expect = 0.00054, P = 0.00054
Identities = 23/79 (29%), Positives = 41/79 (51%)
Query: 46 PEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAKE 105
P +P+KP++ Y F + I +NPN EV+K+V+ W +GE +K+ + +
Sbjct: 251 PNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDSLGEEQKQVYKRKTEAA 310
Query: 106 KEIYAQNVKKYHDELTPEA 124
K+ Y + + Y L +A
Sbjct: 311 KKEYLKALAAYRASLVSKA 329
>UNIPROTKB|O15405 [details] [associations]
symbol:TOX3 "TOX high mobility group box family member 3"
species:9606 "Homo sapiens" [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0051219
"phosphoprotein binding" evidence=IPI] [GO:0005515 "protein
binding" evidence=IPI] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0042803 "protein
homodimerization activity" evidence=IDA] [GO:0034056 "estrogen
response element binding" evidence=IDA] [GO:0003682 "chromatin
binding" evidence=IDA] [GO:0043524 "negative regulation of neuron
apoptotic process" evidence=IDA] InterPro:IPR009071 PROSITE:PS00353
Pfam:PF00505 GO:GO:0005634 GO:GO:0006915 GO:GO:0045893
GO:GO:0042803 GO:GO:0043524 GO:GO:0006351 GO:GO:0003682
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0034056 HOGENOM:HOG000230949 HOVERGEN:HBG051183 EMBL:AK299202
EMBL:AC007490 EMBL:U80736 IPI:IPI00903025 IPI:IPI00929129
RefSeq:NP_001073899.2 RefSeq:NP_001139660.1 UniGene:Hs.460789
HSSP:Q66JW3 ProteinModelPortal:O15405 SMR:O15405 STRING:O15405
PhosphoSite:O15405 PaxDb:O15405 PRIDE:O15405 DNASU:27324
Ensembl:ENST00000219746 Ensembl:ENST00000407228 GeneID:27324
KEGG:hsa:27324 UCSC:uc002egw.2 CTD:27324 GeneCards:GC16M052471
H-InvDB:HIX0013031 HGNC:HGNC:11972 HPA:HPA040376 MIM:611416
neXtProt:NX_O15405 PharmGKB:PA162406752 eggNOG:NOG284736
OMA:HSLIMRS ChiTaRS:TOX3 GenomeRNAi:27324 NextBio:50340
ArrayExpress:O15405 Bgee:O15405 CleanEx:HS_TOX3
Genevestigator:O15405 Uniprot:O15405
Length = 576
Score = 108 (43.1 bits), Expect = 0.00055, P = 0.00055
Identities = 23/79 (29%), Positives = 41/79 (51%)
Query: 46 PEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAKE 105
P +P+KP++ Y F + I +NPN EV+K+V+ W +GE +K+ + +
Sbjct: 252 PNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDSLGEEQKQVYKRKTEAA 311
Query: 106 KEIYAQNVKKYHDELTPEA 124
K+ Y + + Y L +A
Sbjct: 312 KKEYLKALAAYRASLVSKA 330
>RGD|1311529 [details] [associations]
symbol:Tox3 "TOX high mobility group box family member 3"
species:10116 "Rattus norvegicus" [GO:0003682 "chromatin binding"
evidence=ISO;ISS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IEA] [GO:0019722 "calcium-mediated signaling"
evidence=IDA] [GO:0034056 "estrogen response element binding"
evidence=ISO;ISS] [GO:0042803 "protein homodimerization activity"
evidence=ISO;ISS] [GO:0043524 "negative regulation of neuron
apoptotic process" evidence=ISO;ISS] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISO;IDA]
[GO:0051219 "phosphoprotein binding" evidence=ISO]
InterPro:IPR009071 PROSITE:PS00353 Pfam:PF00505 RGD:1311529
GO:GO:0005634 GO:GO:0006915 GO:GO:0045893 GO:GO:0042803
GO:GO:0019722 GO:GO:0043524 GO:GO:0006351 GO:GO:0003682
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0034056 HOVERGEN:HBG051183 eggNOG:NOG284736 OrthoDB:EOG4K0QNS
EMBL:EU194254 IPI:IPI00371454 UniGene:Rn.41060
Genevestigator:B7SBD2 Uniprot:B7SBD2
Length = 577
Score = 108 (43.1 bits), Expect = 0.00055, P = 0.00055
Identities = 23/79 (29%), Positives = 41/79 (51%)
Query: 46 PEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAKE 105
P +P+KP++ Y F + I +NPN EV+K+V+ W +GE +K+ + +
Sbjct: 251 PNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDSLGEEQKQVYKRKTEAA 310
Query: 106 KEIYAQNVKKYHDELTPEA 124
K+ Y + + Y L +A
Sbjct: 311 KKEYLKALAAYRASLVSKA 329
>UNIPROTKB|E1BQV6 [details] [associations]
symbol:TOX3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003682 "chromatin binding" evidence=IEA] [GO:0034056
"estrogen response element binding" evidence=IEA] [GO:0042803
"protein homodimerization activity" evidence=IEA] [GO:0043524
"negative regulation of neuron apoptotic process" evidence=IEA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0051219 "phosphoprotein binding" evidence=IEA]
InterPro:IPR009071 Pfam:PF00505 GO:GO:0045893 GO:GO:0043524
GO:GO:0003682 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0034056 GeneTree:ENSGT00560000076898
OMA:HSLIMRS EMBL:AADN02038322 EMBL:AADN02038323 EMBL:AADN02038324
EMBL:AADN02038325 EMBL:AADN02038326 EMBL:AADN02038327
EMBL:AADN02038328 EMBL:AADN02038329 IPI:IPI00576205
Ensembl:ENSGALT00000005929 ArrayExpress:E1BQV6 Uniprot:E1BQV6
Length = 580
Score = 108 (43.1 bits), Expect = 0.00055, P = 0.00055
Identities = 23/79 (29%), Positives = 41/79 (51%)
Query: 46 PEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAKE 105
P +P+KP++ Y F + I +NPN EV+K+V+ W +GE +K+ + +
Sbjct: 257 PNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDSLGEEQKQVYKRKTEAA 316
Query: 106 KEIYAQNVKKYHDELTPEA 124
K+ Y + + Y L +A
Sbjct: 317 KKEYLKALAAYRASLVSKA 335
>UNIPROTKB|B6ZLK1 [details] [associations]
symbol:SSRP1 "Structure-specific recognition protein 1"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR009071 InterPro:IPR000969 PRINTS:PR00887
Pfam:PF00505 Pfam:PF03531 GO:GO:0005634 GO:GO:0005737
Gene3D:2.30.29.30 InterPro:IPR011993 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GeneTree:ENSGT00700000104547 InterPro:IPR013719 Pfam:PF08512
InterPro:IPR024954 OMA:PVEVKKG IPI:IPI00582237 UniGene:Gga.2985
HOVERGEN:HBG002932 EMBL:AADN02050757 EMBL:AADN02050758
EMBL:AB465209 STRING:B6ZLK1 Ensembl:ENSGALT00000012159
Ensembl:ENSGALT00000038738 Uniprot:B6ZLK1
Length = 706
Score = 108 (43.1 bits), Expect = 0.00071, P = 0.00071
Identities = 23/81 (28%), Positives = 41/81 (50%)
Query: 36 KQQTSQPLSIPEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEK 95
KQ S+ P PK+P++ Y + R KI +P I I +++K E WK + + +K
Sbjct: 532 KQVESKKGKDPNAPKRPMSAYMLWLNANREKIKSDHPGISITDLSKKAGELWKAMSKEKK 591
Query: 96 KRLENEYAKEKEIYAQNVKKY 116
+ + + K Y + +K+Y
Sbjct: 592 EEWDRKAEDAKRDYEKAMKEY 612
>UNIPROTKB|Q04678 [details] [associations]
symbol:SSRP1 "FACT complex subunit SSRP1" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006260
"DNA replication" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005694 "chromosome" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] InterPro:IPR009071
InterPro:IPR000969 PRINTS:PR00887 Pfam:PF00505 Pfam:PF03531
GO:GO:0005694 GO:GO:0005730 GO:GO:0006355 Gene3D:2.30.29.30
InterPro:IPR011993 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
GO:GO:0006351 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 InterPro:IPR013719 Pfam:PF08512 eggNOG:COG5165
KO:K09272 InterPro:IPR024954 HOGENOM:HOG000180790 EMBL:AJ719641
EMBL:L08815 EMBL:D14315 IPI:IPI00582237 PIR:S78050
RefSeq:NP_001005796.1 UniGene:Gga.2985 ProteinModelPortal:Q04678
STRING:Q04678 PRIDE:Q04678 GeneID:396509 KEGG:gga:396509 CTD:6749
HOVERGEN:HBG002932 InParanoid:Q04678 OrthoDB:EOG41VK2K
NextBio:20816548 Uniprot:Q04678
Length = 706
Score = 108 (43.1 bits), Expect = 0.00071, P = 0.00071
Identities = 23/81 (28%), Positives = 41/81 (50%)
Query: 36 KQQTSQPLSIPEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEK 95
KQ S+ P PK+P++ Y + R KI +P I I +++K E WK + + +K
Sbjct: 532 KQVESKKGKDPNAPKRPMSAYMLWLNANREKIKSDHPGISITDLSKKAGELWKAMSKEKK 591
Query: 96 KRLENEYAKEKEIYAQNVKKY 116
+ + + K Y + +K+Y
Sbjct: 592 EEWDRKAEDAKRDYEKAMKEY 612
>UNIPROTKB|Q6NVN0 [details] [associations]
symbol:sox2 "Transcription factor Sox-2" species:8364
"Xenopus (Silurana) tropicalis" [GO:0005634 "nucleus" evidence=ISS]
[GO:0007399 "nervous system development" evidence=ISS] [GO:0043565
"sequence-specific DNA binding" evidence=ISS] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISS] InterPro:IPR009071
Pfam:PF00505 GO:GO:0005634 GO:GO:0007399 GO:GO:0030154
GO:GO:0051091 GO:GO:0043565 GO:GO:0045944 GO:GO:0003700
GO:GO:0006351 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0031101 OrthoDB:EOG4MPHQV
GeneTree:ENSGT00690000101940 GO:GO:0048592 HSSP:P48432
eggNOG:NOG302715 HOGENOM:HOG000231647 KO:K09267 InterPro:IPR022097
Pfam:PF12336 CTD:6657 EMBL:CR760314 EMBL:BC067975
RefSeq:NP_998869.1 UniGene:Str.6201 ProteinModelPortal:Q6NVN0
SMR:Q6NVN0 Ensembl:ENSXETT00000004031 GeneID:407873 KEGG:xtr:407873
Xenbase:XB-GENE-484553 InParanoid:Q6NVN0 OMA:SAHNAPQ Bgee:Q6NVN0
Uniprot:Q6NVN0
Length = 311
Score = 104 (41.7 bits), Expect = 0.00079, P = 0.00079
Identities = 24/80 (30%), Positives = 47/80 (58%)
Query: 40 SQPLSIPEKPKKPLTPYFKF-QGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRL 98
+Q + P++ K+P+ + + +GQ R K+ + NP + E++K + EWK + EAEK+
Sbjct: 28 NQSKNSPDRVKRPMNAFMVWSRGQ-RRKMAQENPKMHNSEISKRLGAEWKLLSEAEKRPF 86
Query: 99 ENEYAKEKEIYAQNVKKYHD 118
+E K + A ++K++ D
Sbjct: 87 IDE---AKRLRALHMKEHPD 103
>TAIR|locus:2053893 [details] [associations]
symbol:HMGB4 "high mobility group B4" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM;IDA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0000785 "chromatin" evidence=TAS]
[GO:0003682 "chromatin binding" evidence=TAS] [GO:0006333
"chromatin assembly or disassembly" evidence=RCA;TAS] [GO:0030527
"structural constituent of chromatin" evidence=TAS] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006084 "acetyl-CoA metabolic
process" evidence=RCA] [GO:0006342 "chromatin silencing"
evidence=RCA] [GO:0006364 "rRNA processing" evidence=RCA]
[GO:0008283 "cell proliferation" evidence=RCA] [GO:0016572 "histone
phosphorylation" evidence=RCA] [GO:0051567 "histone H3-K9
methylation" evidence=RCA] [GO:0003677 "DNA binding"
evidence=ISS;IDA] InterPro:IPR009071 Pfam:PF00505 GO:GO:0005829
GO:GO:0005634 GO:GO:0005737 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0003677 GO:GO:0000785 GO:GO:0003700 GO:GO:0003682
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0006333 EMBL:AC007584 HOGENOM:HOG000197860 GO:GO:0030527
eggNOG:NOG320947 EMBL:Y14074 EMBL:F20020 EMBL:AF370150
EMBL:AF370562 EMBL:AY150467 EMBL:AK317044 EMBL:AY086336
IPI:IPI00516334 IPI:IPI00656969 PIR:F84553 PIR:T51596
RefSeq:NP_001031364.2 RefSeq:NP_001077909.1 RefSeq:NP_179347.1
UniGene:At.481 HSSP:P11632 ProteinModelPortal:Q42344 SMR:Q42344
STRING:Q42344 PaxDb:Q42344 PRIDE:Q42344 EnsemblPlants:AT2G17560.1
EnsemblPlants:AT2G17560.2 GeneID:816263 KEGG:ath:AT2G17560
TAIR:At2g17560 InParanoid:Q42344 OMA:LANPNNK PhylomeDB:Q42344
ProtClustDB:CLSN2683898 Genevestigator:Q42344 Uniprot:Q42344
Length = 138
Score = 94 (38.1 bits), Expect = 0.00085, P = 0.00085
Identities = 22/76 (28%), Positives = 37/76 (48%)
Query: 46 PEKPKKPLTPYFKFQGQIRNKIMERNPNIK-IIEVTKLVSEEWKKIGEAEKKRLENEYAK 104
P +PK+P + +F F R + NPN K + V K WK + + +K +
Sbjct: 32 PNQPKRPPSAFFVFLEDFRKEFNLANPNNKSVATVGKAAGARWKAMTDEDKAPYVAKAES 91
Query: 105 EKEIYAQNVKKYHDEL 120
K Y +NV++Y+ +L
Sbjct: 92 RKTEYIKNVQQYNLKL 107
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.315 0.134 0.383 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 180 163 0.00084 107 3 11 23 0.43 32
30 0.44 34
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 167
No. of states in DFA: 583 (62 KB)
Total size of DFA: 146 KB (2089 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:01
No. of threads or processors used: 24
Search cpu time: 21.16u 0.07s 21.23t Elapsed: 00:00:34
Total cpu time: 21.18u 0.08s 21.26t Elapsed: 00:00:35
Start: Thu Aug 15 10:50:16 2013 End: Thu Aug 15 10:50:51 2013
WARNINGS ISSUED: 1