RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14923
(180 letters)
>d1hsma_ a.21.1.1 (A:) High mobility group protein 1, HMG1 {Hamster
(Cricetulus griseus) [TaxId: 10029]}
Length = 79
Score = 56.4 bits (136), Expect = 7e-12
Identities = 24/77 (31%), Positives = 40/77 (51%)
Query: 48 KPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAKEKE 107
PK+P + +F F + R KI +P + I +V K + E W +K+ E + AK KE
Sbjct: 2 APKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKE 61
Query: 108 IYAQNVKKYHDELTPEA 124
Y +++ Y + P+A
Sbjct: 62 KYEKDIAAYRAKGKPDA 78
>d1v63a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream
binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 101
Score = 51.8 bits (124), Expect = 6e-10
Identities = 14/92 (15%), Positives = 40/92 (43%), Gaps = 2/92 (2%)
Query: 48 KPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAKEKE 107
K P+ Y KF ++ + + +K E + W++I +++K+ + +++
Sbjct: 8 PKKPPMNGYQKFSQELLSNGELNHLPLK--ERMVEIGSRWQRISQSQKEHYKKLAEEQQR 65
Query: 108 IYAQNVKKYHDELTPEAIEFLRKEKEVKKQKK 139
Y ++ + L+P+ ++ K++
Sbjct: 66 QYKVHLDLWVKSLSPQDRAAYKEYISNKRKSG 97
>d1wgfa_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream
binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 90
Score = 51.1 bits (122), Expect = 1e-09
Identities = 18/71 (25%), Positives = 34/71 (47%)
Query: 46 PEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAKE 105
EKPK+P++ F F + R ++ E P + E+T+L++ W + E +K + + A
Sbjct: 18 SEKPKRPVSAMFIFSEEKRRQLQEERPELSESELTRLLARMWNDLSEKKKAKYKAREAAL 77
Query: 106 KEIYAQNVKKY 116
K +
Sbjct: 78 KAQSERKSGPS 88
>d1lwma_ a.21.1.1 (A:) NHP6a {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 93
Score = 50.7 bits (121), Expect = 1e-09
Identities = 26/91 (28%), Positives = 46/91 (50%)
Query: 30 VTTAGLKQQTSQPLSIPEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKK 89
VT K++T++ P PK+ L+ Y F + R+ + NP+I +V K + E+WK
Sbjct: 2 VTPREPKKRTTRKKKDPNAPKRALSAYMFFANENRDIVRSENPDITFGQVGKKLGEKWKA 61
Query: 90 IGEAEKKRLENEYAKEKEIYAQNVKKYHDEL 120
+ EK+ E + +K+ Y + Y+ L
Sbjct: 62 LTPEEKQPYEAKAQADKKRYESEKELYNATL 92
Score = 26.0 bits (57), Expect = 1.1
Identities = 7/42 (16%), Positives = 18/42 (42%)
Query: 135 KKQKKEKREMKKLFRETGKPKKPGNSFYLFIKDNIDKKEYEG 176
++ K+ + ++ PK+ +++ F +N D E
Sbjct: 2 VTPREPKKRTTRKKKDPNAPKRALSAYMFFANENRDIVRSEN 43
>d1ckta_ a.21.1.1 (A:) High mobility group protein 1, HMG1 {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 71
Score = 49.1 bits (117), Expect = 3e-09
Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 48 KPKKPLTPYFKFQGQIRNKIMERNPNIKII--EVTKLVSEEWKKIGEAEKKRLENEYAKE 105
KP+ ++ Y F R + +++P+ + E +K SE WK + EK + E+ +
Sbjct: 1 KPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKAD 60
Query: 106 KEIYAQNVKKY 116
K Y + +K Y
Sbjct: 61 KARYEREMKTY 71
>d1qrva_ a.21.1.1 (A:) HMG-D {Drosophila melanogaster [TaxId: 7227]}
Length = 73
Score = 49.0 bits (117), Expect = 4e-09
Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Query: 48 KPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAKEKE 107
KPK+PL+ Y + R I NP IK+ EV K E W+ +K E + AK K+
Sbjct: 3 KPKRPLSAYMLWLNSARESIKRENPGIKVTEVAKRGGELWRA--MKDKSEWEAKAAKAKD 60
Query: 108 IYAQNVKKYH 117
Y + VK++
Sbjct: 61 DYDRAVKEFE 70
>d1gt0d_ a.21.1.1 (D:) Sox-2 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 80
Score = 48.6 bits (116), Expect = 5e-09
Identities = 16/71 (22%), Positives = 36/71 (50%)
Query: 47 EKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAKEK 106
++ K+P+ + + R K+ + NP + E++K + EWK + E EK+ +E + +
Sbjct: 1 DRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEAKRLR 60
Query: 107 EIYAQNVKKYH 117
++ + Y
Sbjct: 61 ALHMKEHPDYK 71
>d1k99a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream
binding factor 1, UBF-1) {Human (Homo sapiens) [TaxId:
9606]}
Length = 91
Score = 48.4 bits (115), Expect = 9e-09
Identities = 23/71 (32%), Positives = 50/71 (70%)
Query: 46 PEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAKE 105
P+ PKKPLTPYF+F + R K + +P + +++TK++S+++K++ E +K + ++ +E
Sbjct: 8 PDFPKKPLTPYFRFFMEKRAKYAKLHPEMSNLDLTKILSKKYKELPEKKKMKYIQDFQRE 67
Query: 106 KEIYAQNVKKY 116
K+ + +N+ ++
Sbjct: 68 KQEFERNLARF 78
Score = 23.4 bits (50), Expect = 9.8
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 144 MKKLFRETGKPKKPGNSFYLFIKDNIDK 171
MKKL + PKKP ++ F + K
Sbjct: 1 MKKLKKHPDFPKKPLTPYFRFFMEKRAK 28
>d1j46a_ a.21.1.1 (A:) SRY {Human (Homo sapiens) [TaxId: 9606]}
Length = 85
Score = 46.0 bits (109), Expect = 6e-08
Identities = 17/71 (23%), Positives = 35/71 (49%)
Query: 47 EKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAKEK 106
++ K+P+ + + R K+ NP ++ E++K + +WK + EAEK E K +
Sbjct: 3 DRVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQ 62
Query: 107 EIYAQNVKKYH 117
++ + Y
Sbjct: 63 AMHREKYPNYK 73
>d1i11a_ a.21.1.1 (A:) Sox-5 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 70
Score = 45.2 bits (107), Expect = 8e-08
Identities = 14/69 (20%), Positives = 32/69 (46%)
Query: 48 KPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAKEKE 107
K+P+ + + R KI++ P++ ++K++ WK + EK+ E A+ +
Sbjct: 2 HIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKAMTNLEKQPYYEEQARLSK 61
Query: 108 IYAQNVKKY 116
+ + Y
Sbjct: 62 QHLEKYPDY 70
>d1v64a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream
binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 108
Score = 45.7 bits (108), Expect = 1e-07
Identities = 15/91 (16%), Positives = 37/91 (40%), Gaps = 4/91 (4%)
Query: 46 PEKPKKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAKE 105
K P Y + ++ + + E L S++WK + + EK + ++
Sbjct: 15 GRPTKPPPNSYSLYCAELMANMKDVPST----ERMVLCSQQWKLLSQKEKDAYHKKCDQK 70
Query: 106 KEIYAQNVKKYHDELTPEAIEFLRKEKEVKK 136
K+ Y + ++ + L E + + E+++
Sbjct: 71 KKDYEVELLRFLESLPEEEQQRVLGEEKMLN 101
>d2lefa_ a.21.1.1 (A:) Lymphoid enhancer-binding factor, LEF1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 86
Score = 44.1 bits (104), Expect = 4e-07
Identities = 15/92 (16%), Positives = 38/92 (41%), Gaps = 9/92 (9%)
Query: 50 KKPLTPYFKFQGQIRNKIMERNPNIKIIEVTKLVSEEWKKIGEAEKKRLENEYAKEKEIY 109
KKPL + + ++R ++ + + + +++ W + E+ + KE++++
Sbjct: 4 KKPLNAFMLYMKEMRANVVAESTLKESAAINQILGRRWHALSREEQAKYYELARKERQLH 63
Query: 110 AQNVKKYHDELTPEAIEFLRKEKEVKKQKKEK 141
Q + + KK+K+EK
Sbjct: 64 MQLYPGWS---------ARDNYGKKKKRKREK 86
>d1a8ya3 c.47.1.3 (A:229-347) Calsequestrin {Rabbit (Oryctolagus
cuniculus) [TaxId: 9986]}
Length = 119
Score = 25.9 bits (57), Expect = 1.7
Identities = 12/52 (23%), Positives = 21/52 (40%), Gaps = 9/52 (17%)
Query: 94 EKKRLENEYAKEKEIYAQNVKKYH-----DELTPEAIEFLRKEKEVKKQKKE 140
K + E+ Y E + ++ H +E P+ EFL K V + +
Sbjct: 3 RKLKPESMY----ETWEDDMDGIHIVAFAEEADPDGYEFLEILKSVAQDNTD 50
>d1gvea_ c.1.7.1 (A:) Aflatoxin aldehyde reductase (akr7a1) {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 324
Score = 25.8 bits (55), Expect = 3.2
Identities = 4/24 (16%), Positives = 8/24 (33%)
Query: 73 NIKIIEVTKLVSEEWKKIGEAEKK 96
N+ ++E L +A
Sbjct: 291 NLALVEEGPLEPAVVDAFDQAWNL 314
>d1rqpa2 c.132.1.1 (A:8-192) 5'-fluoro-5'-deoxyadenosine synthase
{Streptomyces cattleya [TaxId: 29303]}
Length = 185
Score = 25.2 bits (55), Expect = 4.0
Identities = 3/22 (13%), Positives = 10/22 (45%)
Query: 59 FQGQIRNKIMERNPNIKIIEVT 80
Q + + P++ +++V
Sbjct: 16 SVAQCKGLMYSICPDVTVVDVC 37
>d2axla1 a.4.5.43 (A:1-144) Werner syndrome ATP-dependent helicase
WRN {Human (Homo sapiens) [TaxId: 9606]}
Length = 144
Score = 24.9 bits (54), Expect = 4.6
Identities = 8/55 (14%), Positives = 16/55 (29%)
Query: 106 KEIYAQNVKKYHDELTPEAIEFLRKEKEVKKQKKEKREMKKLFRETGKPKKPGNS 160
E+ N LT + +L K + + + ++ P S
Sbjct: 81 VEVSRYNKFMKICALTKKGRNWLHKANTESQSLILQANEELCPKKLLLPSSKTVS 135
>d1gpua1 c.36.1.10 (A:3-337) Transketolase (TK), PP module {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 335
Score = 24.7 bits (53), Expect = 6.9
Identities = 8/44 (18%), Positives = 16/44 (36%)
Query: 78 EVTKLVSEEWKKIGEAEKKRLENEYAKEKEIYAQNVKKYHDELT 121
V + V + ++K N++ K Y + + EL
Sbjct: 286 VVPQEVYDHYQKTILKPGVEANNKWNKLFSEYQKKFPELGAELA 329
>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase
domain {Simian virus 40 [TaxId: 10633]}
Length = 362
Score = 24.6 bits (53), Expect = 8.7
Identities = 9/58 (15%), Positives = 18/58 (31%), Gaps = 1/58 (1%)
Query: 92 EAEKKRLENEYAKEKEIYAQNVKKYHDELTPEAIEFLRKEKEVKKQKKEKREMKKLFR 149
E + K + + KYH++ A F K K ++ + +
Sbjct: 27 YLEFQYSFEMCLKCIKKEQPSHYKYHEKHYANAAIFA-DSKNQKTICQQAVDTVLAKK 83
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.313 0.132 0.370
Gapped
Lambda K H
0.267 0.0667 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 678,021
Number of extensions: 33299
Number of successful extensions: 240
Number of sequences better than 10.0: 1
Number of HSP's gapped: 223
Number of HSP's successfully gapped: 72
Length of query: 180
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 100
Effective length of database: 1,309,196
Effective search space: 130919600
Effective search space used: 130919600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 50 (23.2 bits)