RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14924
(209 letters)
>gnl|CDD|215741 pfam00135, COesterase, Carboxylesterase family.
Length = 510
Score = 149 bits (377), Expect = 2e-42
Identities = 56/117 (47%), Positives = 74/117 (63%), Gaps = 7/117 (5%)
Query: 54 DESKTSDKTPVLVYIHGESFSWNSGS--VYDGTVLSSFASMVVVTVNYRLGILGFLN-PS 110
+ S K PV+V+IHG F S S YDG L++ +VVVT+NYRLG LGFL+
Sbjct: 92 KLASESKKLPVMVWIHGGGFQSGSASLDDYDGPDLAASEDVVVVTINYRLGALGFLSTGD 151
Query: 111 KDYRARIPANFGLLDQIAALHWIKENIGEFGGDPSNISLMGHGTGAACINFLMTSPA 167
+ +P N GLLDQ+ AL W+K+NI FGGDP N++L G GAA ++ L+ SPA
Sbjct: 152 SE----LPGNAGLLDQVLALRWVKDNIAAFGGDPDNVTLFGESAGAASVSLLLLSPA 204
>gnl|CDD|238191 cd00312, Esterase_lipase, Esterases and lipases (includes fungal
lipases, cholinesterases, etc.) These enzymes act on
carboxylic esters (EC: 3.1.1.-). The catalytic apparatus
involves three residues (catalytic triad): a serine, a
glutamate or aspartate and a histidine.These catalytic
residues are responsible for the nucleophilic attack on
the carbonyl carbon atom of the ester bond. In contrast
with other alpha/beta hydrolase fold family members,
p-nitrobenzyl esterase and acetylcholine esterase have a
Glu instead of Asp at the active site carboxylate.
Length = 493
Score = 128 bits (323), Expect = 6e-35
Identities = 49/113 (43%), Positives = 71/113 (62%), Gaps = 4/113 (3%)
Query: 56 SKTSDKTPVLVYIHGESFSWNSGSVYDGTVLSSFASMV-VVTVNYRLGILGFLNPSKDYR 114
+K + PV+V+IHG F + SGS+Y G L+ V VV++NYRLG+LGFL S
Sbjct: 89 TKPGNSLPVMVWIHGGGFMFGSGSLYPGDGLAREGDNVIVVSINYRLGVLGFL--STG-D 145
Query: 115 ARIPANFGLLDQIAALHWIKENIGEFGGDPSNISLMGHGTGAACINFLMTSPA 167
+P N+GL DQ AL W+++NI FGGDP ++++ G G A ++ L+ SP
Sbjct: 146 IELPGNYGLKDQRLALKWVQDNIAAFGGDPDSVTIFGESAGGASVSLLLLSPD 198
>gnl|CDD|225181 COG2272, PnbA, Carboxylesterase type B [Lipid metabolism].
Length = 491
Score = 128 bits (323), Expect = 7e-35
Identities = 56/112 (50%), Positives = 74/112 (66%), Gaps = 3/112 (2%)
Query: 59 SDKTPVLVYIHGESFSWNSGS--VYDGTVLSSFASMVVVTVNYRLGILGFLNPSKDYRAR 116
++K PV+VYIHG + SGS +YDG+ L++ +VVV+VNYRLG LGFL+ S
Sbjct: 91 AEKLPVMVYIHGGGYIMGSGSEPLYDGSALAARGDVVVVSVNYRLGALGFLDLSSLDTED 150
Query: 117 IPA-NFGLLDQIAALHWIKENIGEFGGDPSNISLMGHGTGAACINFLMTSPA 167
A N GLLDQI AL W+++NI FGGDP N++L G GAA I L+ P+
Sbjct: 151 AFASNLGLLDQILALKWVRDNIEAFGGDPQNVTLFGESAGAASILTLLAVPS 202
>gnl|CDD|223730 COG0657, Aes, Esterase/lipase [Lipid metabolism].
Length = 312
Score = 66.1 bits (161), Expect = 5e-13
Identities = 32/99 (32%), Positives = 45/99 (45%), Gaps = 14/99 (14%)
Query: 60 DKTPVLVYIHGESFSWNSGSVYDGTV--LSSFASMVVVTVNYRLGILGFLNPSKDYRARI 117
PV++Y+HG + S +D V L++ A VVV+V+YRL
Sbjct: 77 ATAPVVLYLHGGGWVLGSLRTHDALVARLAAAAGAVVVSVDYRLA----------PEHPF 126
Query: 118 PANFGLLDQIAALHWIKENIGEFGGDPSNISLMGHGTGA 156
PA D AA W++ N E G DPS I++ G G
Sbjct: 127 PAALE--DAYAAYRWLRANAAELGIDPSRIAVAGDSAGG 163
Score = 34.1 bits (78), Expect = 0.036
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 9 DKTPVLVYIHGESFSWNSGSVYDGTV--LSSFASMVVVTVNYRL 50
PV++Y+HG + S +D V L++ A VVV+V+YRL
Sbjct: 77 ATAPVVLYLHGGGWVLGSLRTHDALVARLAAAAGAVVVSVDYRL 120
>gnl|CDD|219611 pfam07859, Abhydrolase_3, alpha/beta hydrolase fold. This
catalytic domain is found in a very wide range of
enzymes.
Length = 207
Score = 56.4 bits (137), Expect = 6e-10
Identities = 33/95 (34%), Positives = 43/95 (45%), Gaps = 16/95 (16%)
Query: 65 LVYIHGESFSWNSGSVYDGTVLSSFASM---VVVTVNYRLGILGFLNPSKDYRARIPANF 121
LVY HG F S +D + A+ VVV+V+YRL P PA
Sbjct: 1 LVYFHGGGFVLGSADTHD-RLCRRLAAAAGAVVVSVDYRLA------P----EHPFPA-- 47
Query: 122 GLLDQIAALHWIKENIGEFGGDPSNISLMGHGTGA 156
+ D AAL W+ E+ E G DPS I++ G G
Sbjct: 48 AIEDAYAALRWLAEHAWELGADPSRIAVAGDSAGG 82
Score = 29.5 bits (67), Expect = 1.1
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
Query: 14 LVYIHGESFSWNSGSVYDGTVLSSFASM---VVVTVNYRL 50
LVY HG F S +D + A+ VVV+V+YRL
Sbjct: 1 LVYFHGGGFVLGSADTHD-RLCRRLAAAAGAVVVSVDYRL 39
>gnl|CDD|224423 COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases
[Amino acid transport and metabolism].
Length = 620
Score = 38.3 bits (89), Expect = 0.002
Identities = 32/119 (26%), Positives = 49/119 (41%), Gaps = 24/119 (20%)
Query: 44 VTVNYRLGILDESKTSDKTPVLVYIHG-------ESFSWNSGSVYDGTVLSSFASMVVVT 96
T++ L K P++VYIHG SF+ VL+S A V+
Sbjct: 376 ETIHGWLYKPPGFDPRKKYPLIVYIHGGPSAQVGYSFNPEI------QVLAS-AGYAVLA 428
Query: 97 VNYRLGILGFLNPSKDYRARIPANFG---LLDQIAALHWIKENIGEFGGDPSNISLMGH 152
NYR G G+ +++ I ++G L D IAA+ + + DP I + G
Sbjct: 429 PNYR-GSTGY---GREFADAIRGDWGGVDLEDLIAAVDALVK---LPLVDPERIGITGG 480
>gnl|CDD|236660 PRK10162, PRK10162, acetyl esterase; Provisional.
Length = 318
Score = 33.2 bits (76), Expect = 0.086
Identities = 23/103 (22%), Positives = 43/103 (41%), Gaps = 14/103 (13%)
Query: 56 SKTSDKTPVLVYIHGESFSWNSGSVYDGT--VLSSFASMVVVTVNYRLGILGFLNPSKDY 113
D L Y+HG F + +D +L+S++ V+ ++Y L+P
Sbjct: 75 YPQPDSQATLFYLHGGGFILGNLDTHDRIMRLLASYSGCTVIGIDYT------LSP---- 124
Query: 114 RARIPANFGLLDQIAALHWIKENIGEFGGDPSNISLMGHGTGA 156
AR P + + +A + ++ ++G + S I G GA
Sbjct: 125 EARFPQ--AIEEIVAVCCYFHQHAEDYGINMSRIGFAGDSAGA 165
Score = 28.1 bits (63), Expect = 3.7
Identities = 12/48 (25%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Query: 5 SKTSDKTPVLVYIHGESFSWNSGSVYDGT--VLSSFASMVVVTVNYRL 50
D L Y+HG F + +D +L+S++ V+ ++Y L
Sbjct: 75 YPQPDSQATLFYLHGGGFILGNLDTHDRIMRLLASYSGCTVIGIDYTL 122
>gnl|CDD|220999 pfam11144, DUF2920, Protein of unknown function (DUF2920). This
bacterial family of proteins has no known function.
Length = 403
Score = 30.7 bits (70), Expect = 0.44
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 9/53 (16%)
Query: 94 VVTVNYRLGILGFLNPSKD-YRARIPANFGL---LDQIAALHWIKENIGEFGG 142
++ NY+L + L P K+ Y+ NFG+ LD I AL ++K+ +FGG
Sbjct: 135 ILDENYKLNLSVTLIPPKNEYQ-----NFGIMQALDIINALKYLKKRFPKFGG 182
>gnl|CDD|166698 PLN03059, PLN03059, beta-galactosidase; Provisional.
Length = 840
Score = 29.2 bits (65), Expect = 1.8
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 139 EFGGDPSNISLMGHGTGAACINFLMTSPAV 168
E+GG+P+ ISL+ T + C + PA+
Sbjct: 713 EWGGNPAGISLVKRTTDSVCADIFEGQPAL 742
>gnl|CDD|176033 cd08387, C2A_Synaptotagmin-8, C2A domain first repeat present in
Synaptotagmin 8. Synaptotagmin is a
membrane-trafficking protein characterized by a
N-terminal transmembrane region, a linker, and 2
C-terminal C2 domains. Previously all synaptotagmins
were thought to be calcium sensors in the regulation of
neurotransmitter release and hormone secretion, but it
has been shown that not all of them bind calcium. Of
the 17 identified synaptotagmins only 8 bind calcium
(1-3, 5-7, 9, 10). The function of the two C2 domains
that bind calcium are: regulating the fusion step of
synaptic vesicle exocytosis (C2A) and binding to
phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the
absence of calcium ions and to phosphatidylinositol
bisphosphate (PIP2) in their presence (C2B). C2B also
regulates also the recycling step of synaptic vesicles.
C2 domains fold into an 8-standed beta-sandwich that can
adopt 2 structural arrangements: Type I and Type II,
distinguished by a circular permutation involving their
N- and C-terminal beta strands. Many C2 domains are
Ca2+-dependent membrane-targeting modules that bind a
wide variety of substances including bind phospholipids,
inositol polyphosphates, and intracellular proteins.
Most C2 domain proteins are either signal transduction
enzymes that contain a single C2 domain, such as protein
kinase C, or membrane trafficking proteins which contain
at least two C2 domains, such as synaptotagmin 1.
However, there are a few exceptions to this including
RIM isoforms and some splice variants of piccolo/aczonin
and intersectin which only have a single C2 domain. C2
domains with a calcium binding region have negatively
charged residues, primarily aspartates, that serve as
ligands for calcium ions. This cd contains the first C2
repeat, C2A, and has a type-I topology.
Length = 124
Score = 27.8 bits (62), Expect = 2.1
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 175 RFLFFKFFQASRHRVTSLMMLSTSSNISLSEKRE 208
L + F Q SR ++ L + + LSEK +
Sbjct: 85 EVLLYDFDQFSRDECIGVVELPL-AEVDLSEKLD 117
>gnl|CDD|218833 pfam05971, Methyltransf_10, Protein of unknown function (DUF890).
This family consists of several conserved hypothetical
proteins from both eukaryotes and prokaryotes. The
function of this family is unknown.
Length = 299
Score = 28.7 bits (64), Expect = 2.3
Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 13/57 (22%)
Query: 104 LGFLNPSKDYRARIPANFGLLDQIAALHWIKENIGEFGGD-PSNISLMGHGTGAACI 159
GFL P +P G D I HW+ + +G D P+ + GTGA CI
Sbjct: 72 DGFLCPP------VP---GRADYI---HWVADLLGHQDSDIPTLRRALDIGTGANCI 116
>gnl|CDD|241511 cd13357, PH-GRAM_MTMR2_insect-like, Myotubularian related 2 protein
(MTMR2) Pleckstrin Homology-Glucosyltransferases,
Rab-like GTPase activators and Myotubularins (PH-GRAM)
domain. MTMR2 is a member of the myotubularin protein
phosphatase gene family. MTMR2 binds to phosphoinositide
lipids through its PH-GRAM domain, and can hydrolyze
phosphatidylinositol(3)-phosphate and
phosphatidylinositol(3,5)-biphosphate in vitro.
Mutations in MTMR2 are a cause of Charcot-Marie-Tooth
disease type 4B, an autosomal recessive demyelinating
neuropathy. The protein can self-associate and form
heteromers with MTMR5 and MTMR12. MTMR2 contains a
N-terminal PH-GRAM domain, a Rac-induced recruitment
domain (RID) domain, an active PTP domain, a
SET-interaction domain, a coiled-coil region, and a
C-terminal PDZ domain. Myotubularin-related proteins are
a subfamily of protein tyrosine phosphatases (PTPs) that
dephosphorylate D3-phosphorylated inositol lipids.
Mutations in this family cause the human neuromuscular
disorders myotubular myopathy and type 4B
Charcot-Marie-Tooth syndrome. 6 of the 13 MTMRs (MTMRs
5, 9-13) contain naturally occurring substitutions of
residues required for catalysis by PTP family enzymes.
Although these proteins are predicted to be
enzymatically inactive, they are thought to function as
antagonists of endogenous phosphatase activity or
interaction modules. Most MTMRs contain a N-terminal
PH-GRAM domain, a Rac-induced recruitment domain (RID)
domain, a PTP domain (which may be active or inactive),
a SET-interaction domain, and a C-terminal coiled-coil
region. In addition some members contain DENN domain
N-terminal to the PH-GRAM domain and FYVE, PDZ, and PH
domains C-terminal to the coiled-coil region. The GRAM
domain, found in myotubularins, glucosyltransferases,
and other putative membrane-associated proteins, is part
of a larger motif with a pleckstrin homology (PH) domain
fold. The PH domain family possesses multiple functions
including the ability to bind phosphoinositides via its
beta1/beta2, beta3/beta4, and beta6/beta7 connecting
loops and to other proteins. However, no
phosphoinositide binding sites have been found for the
MTMRs to date. Members in this cd include Drosophila,
sea urchins, mosquitos, bees, ticks, and anemones.
Length = 148
Score = 27.8 bits (62), Expect = 2.7
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 8 SDKTPVLVYIHGESFSWNSGSVYDG 32
S+ P+ + + E FS N +VYD
Sbjct: 120 SNSLPLFAFEYKERFSENGWAVYDP 144
Score = 27.8 bits (62), Expect = 2.7
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 59 SDKTPVLVYIHGESFSWNSGSVYDG 83
S+ P+ + + E FS N +VYD
Sbjct: 120 SNSLPLFAFEYKERFSENGWAVYDP 144
>gnl|CDD|215505 PLN02935, PLN02935, Bifunctional NADH kinase/NAD(+) kinase.
Length = 508
Score = 28.3 bits (63), Expect = 3.5
Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 5/38 (13%)
Query: 82 DGTVL---SSFASMVVVTVNYRLGILGFLNP--SKDYR 114
DGTVL S F V V + +G LGF+ P S+ YR
Sbjct: 272 DGTVLWAASMFKGPVPPVVPFSMGSLGFMTPFHSEQYR 309
>gnl|CDD|197648 smart00316, S1, Ribosomal protein S1-like RNA-binding domain.
Length = 72
Score = 26.0 bits (58), Expect = 3.8
Identities = 9/33 (27%), Positives = 13/33 (39%), Gaps = 2/33 (6%)
Query: 78 GSVYDGTVLSSFASMVVVTVNYRLGILGFLNPS 110
G V +GTV V + G+ G + S
Sbjct: 3 GDVVEGTVTEITPGGAFVDLGN--GVEGLIPIS 33
>gnl|CDD|215752 pfam00151, Lipase, Lipase.
Length = 329
Score = 27.0 bits (60), Expect = 6.9
Identities = 20/107 (18%), Positives = 41/107 (38%), Gaps = 12/107 (11%)
Query: 53 LDESKTSDKTPVLVYIHGESFSWNSGSVYDGTVLSSFASMV-VVTVNYRLGILGFLNPSK 111
++ S + IHG + + + ++ V VN + ++ + + S
Sbjct: 62 IENSNFNTSKKTRAIIHG----FTDKGQEESWLSDMCKNLFQVEGVN--VIVVDWGSGST 115
Query: 112 DYRARIPANFGLLDQIAA--LHWIKENIGEFGGDPSNISLMGHGTGA 156
+ + N ++ A L ++E E P N+ L+GH GA
Sbjct: 116 TFYRQATLNVRVVGAEVAKLLVELEE---ELNVSPENVHLIGHSLGA 159
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.133 0.394
Gapped
Lambda K H
0.267 0.0777 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,666,692
Number of extensions: 997172
Number of successful extensions: 788
Number of sequences better than 10.0: 1
Number of HSP's gapped: 774
Number of HSP's successfully gapped: 28
Length of query: 209
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 116
Effective length of database: 6,812,680
Effective search space: 790270880
Effective search space used: 790270880
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (25.6 bits)