BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14926
(140 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q17R09|PRP16_BOVIN Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 OS=Bos
taurus GN=DHX38 PE=2 SV=1
Length = 1227
Score = 122 bits (305), Expect = 9e-28, Method: Composition-based stats.
Identities = 53/77 (68%), Positives = 65/77 (84%)
Query: 6 FFLIYLQVIARRQDLKLIVTSATMDADKFSNFFGNVPTFHIPGRTFPVDVFFAKNPVEDY 65
F + +V+ARR DLKLIVTSATMDA+KF++FFGNVP FHIPGRTFPVD+ F+K P EDY
Sbjct: 664 LFGLLREVVARRSDLKLIVTSATMDAEKFASFFGNVPIFHIPGRTFPVDILFSKTPQEDY 723
Query: 66 VDSAVKQALQIHLIPNP 82
V++AVKQ+LQ+HL P
Sbjct: 724 VEAAVKQSLQVHLSGAP 740
>sp|Q92620|PRP16_HUMAN Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 OS=Homo
sapiens GN=DHX38 PE=1 SV=2
Length = 1227
Score = 120 bits (302), Expect = 2e-27, Method: Composition-based stats.
Identities = 53/77 (68%), Positives = 64/77 (83%)
Query: 6 FFLIYLQVIARRQDLKLIVTSATMDADKFSNFFGNVPTFHIPGRTFPVDVFFAKNPVEDY 65
F + +V+ARR DLKLIVTSATMDA+KF+ FFGNVP FHIPGRTFPVD+ F+K P EDY
Sbjct: 664 LFGLLREVVARRSDLKLIVTSATMDAEKFAAFFGNVPIFHIPGRTFPVDILFSKTPQEDY 723
Query: 66 VDSAVKQALQIHLIPNP 82
V++AVKQ+LQ+HL P
Sbjct: 724 VEAAVKQSLQVHLSGAP 740
>sp|P34498|MOG1_CAEEL Probable pre-mRNA-splicing factor ATP-dependent RNA helicase mog-1
OS=Caenorhabditis elegans GN=mog-1 PE=1 SV=2
Length = 1131
Score = 113 bits (283), Expect = 3e-25, Method: Composition-based stats.
Identities = 53/74 (71%), Positives = 63/74 (85%), Gaps = 1/74 (1%)
Query: 6 FFLIYLQVIARRQDLKLIVTSATMDADKFSNFFG-NVPTFHIPGRTFPVDVFFAKNPVED 64
F + +VIA+R DLKLIVTSATMDADKF++FFG N PTF IPGRTFPV++F A+ PVED
Sbjct: 573 LFGLLREVIAKRADLKLIVTSATMDADKFADFFGGNCPTFTIPGRTFPVELFHARTPVED 632
Query: 65 YVDSAVKQALQIHL 78
YVD+AVKQA+ IHL
Sbjct: 633 YVDAAVKQAVTIHL 646
>sp|Q9P774|PRP16_SCHPO Pre-mRNA-splicing factor ATP-dependent RNA helicase prp16
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=prp16 PE=3 SV=2
Length = 1173
Score = 103 bits (257), Expect = 3e-22, Method: Composition-based stats.
Identities = 43/67 (64%), Positives = 57/67 (85%)
Query: 12 QVIARRQDLKLIVTSATMDADKFSNFFGNVPTFHIPGRTFPVDVFFAKNPVEDYVDSAVK 71
+V++RR+D+KL+VTSATM++ KFS+FFG P F IPGRT+PVD+ FAK P DYV++AV+
Sbjct: 630 KVLSRRRDIKLLVTSATMNSQKFSDFFGGAPQFTIPGRTYPVDIMFAKAPCSDYVEAAVR 689
Query: 72 QALQIHL 78
Q LQIHL
Sbjct: 690 QVLQIHL 696
>sp|P15938|PRP16_YEAST Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=PRP16 PE=1 SV=2
Length = 1071
Score = 100 bits (248), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 46/78 (58%), Positives = 59/78 (75%), Gaps = 1/78 (1%)
Query: 2 FTADFFLIYLQVI-ARRQDLKLIVTSATMDADKFSNFFGNVPTFHIPGRTFPVDVFFAKN 60
D L + +++ ARR+DLKLI+TSATM+A KFS FFGN P F IPGRTFPV + N
Sbjct: 480 LNTDILLGFFKILLARRRDLKLIITSATMNAKKFSAFFGNAPQFTIPGRTFPVQTIYTSN 539
Query: 61 PVEDYVDSAVKQALQIHL 78
PV+DYV++AV QA++IHL
Sbjct: 540 PVQDYVEAAVSQAVKIHL 557
>sp|O45244|DHX16_CAEEL Probable pre-mRNA-splicing factor ATP-dependent RNA helicase mog-4
OS=Caenorhabditis elegans GN=mog-4 PE=1 SV=2
Length = 1008
Score = 89.4 bits (220), Expect = 6e-18, Method: Composition-based stats.
Identities = 39/75 (52%), Positives = 56/75 (74%), Gaps = 1/75 (1%)
Query: 5 DFFLIYLQVIAR-RQDLKLIVTSATMDADKFSNFFGNVPTFHIPGRTFPVDVFFAKNPVE 63
D ++ IAR R+DLKL+++SAT+DA+KFS+FF + P F IPGR FPVD+++ + P
Sbjct: 495 DILFGLVKDIARFRKDLKLLISSATLDAEKFSSFFDDAPIFRIPGRRFPVDIYYTQAPEA 554
Query: 64 DYVDSAVKQALQIHL 78
DYVD+A+ +QIHL
Sbjct: 555 DYVDAAIVTIMQIHL 569
>sp|A2A4P0|DHX8_MOUSE ATP-dependent RNA helicase DHX8 OS=Mus musculus GN=Dhx8 PE=2 SV=1
Length = 1244
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 53/77 (68%)
Query: 6 FFLIYLQVIARRQDLKLIVTSATMDADKFSNFFGNVPTFHIPGRTFPVDVFFAKNPVEDY 65
F + + + +RQD+KLIVTSAT+DA KFS +F P F IPGRT+PV++ + K P DY
Sbjct: 721 LFGLLKKTVQKRQDMKLIVTSATLDAVKFSQYFYEAPIFTIPGRTYPVEILYTKEPETDY 780
Query: 66 VDSAVKQALQIHLIPNP 82
+D+++ +QIHL P
Sbjct: 781 LDASLITVMQIHLTEPP 797
>sp|Q14562|DHX8_HUMAN ATP-dependent RNA helicase DHX8 OS=Homo sapiens GN=DHX8 PE=1 SV=1
Length = 1220
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 38/82 (46%), Positives = 55/82 (67%)
Query: 1 MFTADFFLIYLQVIARRQDLKLIVTSATMDADKFSNFFGNVPTFHIPGRTFPVDVFFAKN 60
+ T F + + + +RQD+KLIVTSAT+DA KFS +F P F IPGRT+PV++ + K
Sbjct: 692 IHTDVLFGLLKKTVQKRQDMKLIVTSATLDAVKFSQYFYEAPIFTIPGRTYPVEILYTKE 751
Query: 61 PVEDYVDSAVKQALQIHLIPNP 82
P DY+D+++ +QIHL P
Sbjct: 752 PETDYLDASLITVMQIHLTEPP 773
>sp|Q38953|DHX8_ARATH Probable pre-mRNA-splicing factor ATP-dependent RNA helicase
OS=Arabidopsis thaliana GN=At3g26560 PE=1 SV=2
Length = 1168
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 39/73 (53%), Positives = 53/73 (72%)
Query: 6 FFLIYLQVIARRQDLKLIVTSATMDADKFSNFFGNVPTFHIPGRTFPVDVFFAKNPVEDY 65
F + +++ RR DL+LIVTSAT+DA+KFS +F N F IPGRTFPV++ + K P DY
Sbjct: 647 LFGLLKKLMKRRLDLRLIVTSATLDAEKFSGYFFNCNIFTIPGRTFPVEILYTKQPETDY 706
Query: 66 VDSAVKQALQIHL 78
+D+A+ LQIHL
Sbjct: 707 LDAALITVLQIHL 719
>sp|O42643|PRP22_SCHPO Pre-mRNA-splicing factor ATP-dependent RNA helicase prp22
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=prp22 PE=1 SV=1
Length = 1168
Score = 83.2 bits (204), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 53/77 (68%)
Query: 6 FFLIYLQVIARRQDLKLIVTSATMDADKFSNFFGNVPTFHIPGRTFPVDVFFAKNPVEDY 65
F + + +R DLKLIVTSAT+DA++FS++F P F IPGR++PV++ + K P DY
Sbjct: 643 LFGLLKGTVLKRPDLKLIVTSATLDAERFSSYFYKCPIFTIPGRSYPVEIMYTKQPEADY 702
Query: 66 VDSAVKQALQIHLIPNP 82
+D+A+ +QIHL P
Sbjct: 703 LDAALMTVMQIHLSEGP 719
>sp|Q7YR39|DHX16_PANTR Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
OS=Pan troglodytes GN=DHX16 PE=3 SV=1
Length = 1044
Score = 82.0 bits (201), Expect = 1e-15, Method: Composition-based stats.
Identities = 37/79 (46%), Positives = 51/79 (64%), Gaps = 1/79 (1%)
Query: 5 DFFLIYLQVIAR-RQDLKLIVTSATMDADKFSNFFGNVPTFHIPGRTFPVDVFFAKNPVE 63
D ++ +AR R +LK++V SATMD +FS FF + P F IPGR FPVD+F+ K P
Sbjct: 533 DILFGLIKDVARFRPELKVLVASATMDTARFSTFFDDAPVFRIPGRRFPVDIFYTKAPEA 592
Query: 64 DYVDSAVKQALQIHLIPNP 82
DY+++ V LQIH+ P
Sbjct: 593 DYLEACVVSVLQIHVTQPP 611
>sp|O60231|DHX16_HUMAN Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
OS=Homo sapiens GN=DHX16 PE=1 SV=2
Length = 1041
Score = 81.6 bits (200), Expect = 1e-15, Method: Composition-based stats.
Identities = 37/79 (46%), Positives = 51/79 (64%), Gaps = 1/79 (1%)
Query: 5 DFFLIYLQVIAR-RQDLKLIVTSATMDADKFSNFFGNVPTFHIPGRTFPVDVFFAKNPVE 63
D ++ +AR R +LK++V SATMD +FS FF + P F IPGR FPVD+F+ K P
Sbjct: 530 DILFGLIKDVARFRPELKVLVASATMDTARFSTFFDDAPVFRIPGRRFPVDIFYTKAPEA 589
Query: 64 DYVDSAVKQALQIHLIPNP 82
DY+++ V LQIH+ P
Sbjct: 590 DYLEACVVSVLQIHVTQPP 608
>sp|Q54F05|DHX8_DICDI ATP-dependent RNA helicase dhx8 OS=Dictyostelium discoideum GN=dhx8
PE=3 SV=1
Length = 1160
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 54/77 (70%)
Query: 6 FFLIYLQVIARRQDLKLIVTSATMDADKFSNFFGNVPTFHIPGRTFPVDVFFAKNPVEDY 65
F + Q + RR +LK+++TSAT++A+KFS +F N F IPGRTFPVD+ + K+P DY
Sbjct: 640 LFGLLKQALQRRPELKVLITSATLEAEKFSKYFMNAQLFIIPGRTFPVDIRYTKDPEADY 699
Query: 66 VDSAVKQALQIHLIPNP 82
+D+++ +QIHL P
Sbjct: 700 LDASLITVMQIHLSEPP 716
>sp|Q767K6|DHX16_PIG Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
OS=Sus scrofa GN=DHX16 PE=3 SV=1
Length = 1045
Score = 80.5 bits (197), Expect = 3e-15, Method: Composition-based stats.
Identities = 36/79 (45%), Positives = 51/79 (64%), Gaps = 1/79 (1%)
Query: 5 DFFLIYLQVIAR-RQDLKLIVTSATMDADKFSNFFGNVPTFHIPGRTFPVDVFFAKNPVE 63
D ++ +AR R +LK++V SAT+D +FS FF + P F IPGR FPVD+F+ K P
Sbjct: 534 DILFGLIKDVARFRPELKVLVASATLDTARFSTFFDDAPVFRIPGRRFPVDIFYTKAPEA 593
Query: 64 DYVDSAVKQALQIHLIPNP 82
DY+++ V LQIH+ P
Sbjct: 594 DYLEACVVSVLQIHVTQPP 612
>sp|P53131|PRP43_YEAST Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=PRP43 PE=1 SV=1
Length = 767
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 48/66 (72%)
Query: 12 QVIARRQDLKLIVTSATMDADKFSNFFGNVPTFHIPGRTFPVDVFFAKNPVEDYVDSAVK 71
QV+ RR DLK+I+ SAT+DA+KF +F + P +PGRT+PV++++ DY+DSA++
Sbjct: 233 QVVKRRPDLKIIIMSATLDAEKFQRYFNDAPLLAVPGRTYPVELYYTPEFQRDYLDSAIR 292
Query: 72 QALQIH 77
LQIH
Sbjct: 293 TVLQIH 298
>sp|Q5RAZ4|DHX15_PONAB Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15
OS=Pongo abelii GN=DHX15 PE=2 SV=2
Length = 795
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 48/67 (71%)
Query: 12 QVIARRQDLKLIVTSATMDADKFSNFFGNVPTFHIPGRTFPVDVFFAKNPVEDYVDSAVK 71
+V+ +R DLK+IV SAT+DA KF +F N P IPGRT PV++F+ P DY+++A++
Sbjct: 278 EVVRQRSDLKVIVMSATLDAGKFQIYFDNCPLLTIPGRTHPVEIFYTPEPERDYLEAAIR 337
Query: 72 QALQIHL 78
+QIH+
Sbjct: 338 TVIQIHM 344
>sp|O43143|DHX15_HUMAN Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15
OS=Homo sapiens GN=DHX15 PE=1 SV=2
Length = 795
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 48/67 (71%)
Query: 12 QVIARRQDLKLIVTSATMDADKFSNFFGNVPTFHIPGRTFPVDVFFAKNPVEDYVDSAVK 71
+V+ +R DLK+IV SAT+DA KF +F N P IPGRT PV++F+ P DY+++A++
Sbjct: 278 EVVRQRSDLKVIVMSATLDAGKFQIYFDNCPLLTIPGRTHPVEIFYTPEPERDYLEAAIR 337
Query: 72 QALQIHL 78
+QIH+
Sbjct: 338 TVIQIHM 344
>sp|O35286|DHX15_MOUSE Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15
OS=Mus musculus GN=Dhx15 PE=2 SV=2
Length = 795
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 48/67 (71%)
Query: 12 QVIARRQDLKLIVTSATMDADKFSNFFGNVPTFHIPGRTFPVDVFFAKNPVEDYVDSAVK 71
+V+ +R DLK+IV SAT+DA KF +F N P IPGRT PV++F+ P DY+++A++
Sbjct: 278 EVVRQRSDLKVIVMSATLDAGKFQIYFDNCPLLTIPGRTHPVEIFYTPEPERDYLEAAIR 337
Query: 72 QALQIHL 78
+QIH+
Sbjct: 338 TVIQIHM 344
>sp|Q54MH3|DHX16_DICDI Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
OS=Dictyostelium discoideum GN=dhx16 PE=3 SV=1
Length = 1106
Score = 77.8 bits (190), Expect = 2e-14, Method: Composition-based stats.
Identities = 36/75 (48%), Positives = 51/75 (68%), Gaps = 1/75 (1%)
Query: 5 DFFLIYLQVIAR-RQDLKLIVTSATMDADKFSNFFGNVPTFHIPGRTFPVDVFFAKNPVE 63
D L+ I R R DLKL+++SATMDA++FS++F PTF+IPGR + V + + P
Sbjct: 597 DILFGLLKDITRFRPDLKLLISSATMDAERFSDYFDGAPTFNIPGRKYEVTTHYTQAPEA 656
Query: 64 DYVDSAVKQALQIHL 78
DY+D+AV LQIH+
Sbjct: 657 DYLDAAVVTVLQIHI 671
>sp|Q20875|DHX15_CAEEL Putative pre-mRNA-splicing factor ATP-dependent RNA helicase
F56D2.6 OS=Caenorhabditis elegans GN=F56D2.6 PE=2 SV=1
Length = 739
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 50/68 (73%)
Query: 12 QVIARRQDLKLIVTSATMDADKFSNFFGNVPTFHIPGRTFPVDVFFAKNPVEDYVDSAVK 71
+++ R D+K+++ SAT+DA KF +F + P +PGRTFPV++FF N +DY+++A++
Sbjct: 222 EIVRNRADIKVVIMSATLDAGKFQRYFEDCPLLSVPGRTFPVEIFFTPNAEKDYLEAAIR 281
Query: 72 QALQIHLI 79
+QIH++
Sbjct: 282 TVIQIHMV 289
>sp|O17438|DHX15_STRPU Putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP1
(Fragment) OS=Strongylocentrotus purpuratus GN=PRP1 PE=2
SV=1
Length = 455
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 48/67 (71%)
Query: 12 QVIARRQDLKLIVTSATMDADKFSNFFGNVPTFHIPGRTFPVDVFFAKNPVEDYVDSAVK 71
+V +R DLKL+V SAT+DA KF ++F N P +PGRT PV++F+ P DY+++A++
Sbjct: 46 EVEKQRSDLKLVVMSATLDAGKFQHYFDNAPLMTVPGRTHPVEIFYTPEPERDYLEAAIR 105
Query: 72 QALQIHL 78
+QIH+
Sbjct: 106 TVVQIHM 112
>sp|O42945|DHX15_SCHPO Probable pre-mRNA-splicing factor ATP-dependent RNA helicase prp43
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=prp43 PE=3 SV=1
Length = 735
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 54/82 (65%), Gaps = 1/82 (1%)
Query: 2 FTADFFLIYLQVIA-RRQDLKLIVTSATMDADKFSNFFGNVPTFHIPGRTFPVDVFFAKN 60
D + ++ +A RR DLK+IV SAT+DA KF +F + P +PGRT+PV++++ +
Sbjct: 204 LATDILMGLMKRLATRRPDLKIIVMSATLDAKKFQKYFFDAPLLAVPGRTYPVEIYYTQE 263
Query: 61 PVEDYVDSAVKQALQIHLIPNP 82
P DY+++A++ LQIH+ P
Sbjct: 264 PERDYLEAALRTVLQIHVEEGP 285
>sp|Q10752|CDC28_SCHPO Pre-mRNA-splicing factor ATP-dependent RNA helicase-like protein
cdc28 OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=cdc28 PE=3 SV=2
Length = 1055
Score = 76.6 bits (187), Expect = 4e-14, Method: Composition-based stats.
Identities = 32/74 (43%), Positives = 51/74 (68%), Gaps = 1/74 (1%)
Query: 5 DFFLIYLQVIAR-RQDLKLIVTSATMDADKFSNFFGNVPTFHIPGRTFPVDVFFAKNPVE 63
D ++ IAR R DLK++++SAT+DA+KFS +F P F++PGR +PVD+++ P
Sbjct: 549 DILFGLVKDIARFRPDLKVLISSATIDAEKFSAYFDEAPVFYVPGRRYPVDIYYTPQPEA 608
Query: 64 DYVDSAVKQALQIH 77
+Y+ +A+ LQIH
Sbjct: 609 NYIQAAITTILQIH 622
>sp|Q09530|MOG5_CAEEL Probable pre-mRNA-splicing factor ATP-dependent RNA helicase mog-5
OS=Caenorhabditis elegans GN=mog-5 PE=1 SV=1
Length = 1200
Score = 76.3 bits (186), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 51/79 (64%), Gaps = 1/79 (1%)
Query: 5 DFFLIYLQVIAR-RQDLKLIVTSATMDADKFSNFFGNVPTFHIPGRTFPVDVFFAKNPVE 63
D L+ AR R +LKLI+TSAT+D+ KFS +F P F IPGRTFPV++ + + P
Sbjct: 670 DVLFGLLKAAARKRPELKLIITSATLDSVKFSEYFLEAPIFTIPGRTFPVEILYTREPES 729
Query: 64 DYVDSAVKQALQIHLIPNP 82
DY+++A +QIHL P
Sbjct: 730 DYLEAAHITVMQIHLTEPP 748
>sp|O22899|DHX15_ARATH Probable pre-mRNA-splicing factor ATP-dependent RNA helicase
OS=Arabidopsis thaliana GN=At2g47250 PE=2 SV=1
Length = 729
Score = 75.5 bits (184), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 50/77 (64%)
Query: 6 FFLIYLQVIARRQDLKLIVTSATMDADKFSNFFGNVPTFHIPGRTFPVDVFFAKNPVEDY 65
F + +V+ R DLKL+V SAT++A+KF +F P +PGR PV++F+ + P DY
Sbjct: 203 LFGLLKEVLRNRPDLKLVVMSATLEAEKFQEYFSGAPLMKVPGRLHPVEIFYTQEPERDY 262
Query: 66 VDSAVKQALQIHLIPNP 82
+++A++ +QIH+ P
Sbjct: 263 LEAAIRTVVQIHMCEPP 279
>sp|Q54NJ4|DHX15_DICDI Putative pre-mRNA-splicing factor ATP-dependent RNA helicase dhx15
OS=Dictyostelium discoideum GN=dhx15 PE=3 SV=1
Length = 727
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 48/72 (66%)
Query: 6 FFLIYLQVIARRQDLKLIVTSATMDADKFSNFFGNVPTFHIPGRTFPVDVFFAKNPVEDY 65
F + ++ RR+DLKLIV SAT++A KF +F N P +PGR PV++F+ + +DY
Sbjct: 210 LFGLIKDILKRRKDLKLIVMSATLEAGKFQKYFENAPLIKVPGRLHPVEIFYTEEAAKDY 269
Query: 66 VDSAVKQALQIH 77
++SAV+ + IH
Sbjct: 270 LESAVRTVIDIH 281
>sp|P24384|PRP22_YEAST Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP22
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=PRP22 PE=1 SV=1
Length = 1145
Score = 74.7 bits (182), Expect = 2e-13, Method: Composition-based stats.
Identities = 31/77 (40%), Positives = 52/77 (67%)
Query: 6 FFLIYLQVIARRQDLKLIVTSATMDADKFSNFFGNVPTFHIPGRTFPVDVFFAKNPVEDY 65
F + + +R +LK+IVTSAT+++ KFS +F N P +IPG+TFPV+V +++ P DY
Sbjct: 615 LFALLKKAAIKRPELKVIVTSATLNSAKFSEYFLNCPIINIPGKTFPVEVLYSQTPQMDY 674
Query: 66 VDSAVKQALQIHLIPNP 82
+++A+ + IH+ P
Sbjct: 675 IEAALDCVIDIHINEGP 691
>sp|P20095|PRP2_YEAST Pre-mRNA-splicing factor ATP-dependent RNA helicase-like protein
PRP2 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=PRP2 PE=1 SV=1
Length = 876
Score = 74.3 bits (181), Expect = 2e-13, Method: Composition-based stats.
Identities = 29/65 (44%), Positives = 45/65 (69%)
Query: 13 VIARRQDLKLIVTSATMDADKFSNFFGNVPTFHIPGRTFPVDVFFAKNPVEDYVDSAVKQ 72
++ +R LKL+++SATM+A KFS FF N P F++PGR +PVD+ + P +Y+ +A+
Sbjct: 365 ILPQRPTLKLLISSATMNAKKFSEFFDNCPIFNVPGRRYPVDIHYTLQPEANYIHAAITT 424
Query: 73 ALQIH 77
QIH
Sbjct: 425 IFQIH 429
>sp|Q9H5Z1|DHX35_HUMAN Probable ATP-dependent RNA helicase DHX35 OS=Homo sapiens GN=DHX35
PE=1 SV=2
Length = 703
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 46/72 (63%), Gaps = 10/72 (13%)
Query: 16 RRQDLKLIVTSATMDADKFSNFFGNVPT----------FHIPGRTFPVDVFFAKNPVEDY 65
+R DL+LIV SAT+DADKF +FF T + GRTFPVD+F+ ++PV DY
Sbjct: 198 KRGDLRLIVASATLDADKFRDFFNQNETSDPARDTCVILTVEGRTFPVDIFYLQSPVPDY 257
Query: 66 VDSAVKQALQIH 77
+ S V+ ++IH
Sbjct: 258 IKSTVETVVKIH 269
>sp|Q5RBD4|DHX35_PONAB Probable ATP-dependent RNA helicase DHX35 OS=Pongo abelii GN=DHX35
PE=2 SV=1
Length = 720
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 46/72 (63%), Gaps = 10/72 (13%)
Query: 16 RRQDLKLIVTSATMDADKFSNFFGNVPT----------FHIPGRTFPVDVFFAKNPVEDY 65
+R DL+LIV SAT+DADKF +FF T + GRTFPVD+F+ ++PV DY
Sbjct: 198 KRGDLRLIVASATLDADKFRDFFNQNETSDPARDTCVILTVGGRTFPVDIFYLQSPVPDY 257
Query: 66 VDSAVKQALQIH 77
+ S V+ ++IH
Sbjct: 258 IKSTVETVVKIH 269
>sp|Q9HE06|YK99_SCHPO Putative pre-mRNA-splicing factor ATP-dependent RNA helicase
C20H4.09 OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=SPAC20H4.09 PE=3 SV=1
Length = 647
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 51/79 (64%), Gaps = 3/79 (3%)
Query: 2 FTADFFLIYLQ-VIARRQDLKLIVTSATMDADKFSNFFGN--VPTFHIPGRTFPVDVFFA 58
+ D L L+ ++ +R D +L+++SA++DA+K S FFG V T I G+ FPV+ F
Sbjct: 153 LSTDLLLGVLKRILEKRNDFRLVLSSASVDANKLSQFFGQDKVCTMSIEGKLFPVETLFL 212
Query: 59 KNPVEDYVDSAVKQALQIH 77
+ P E+YVDSA++ + I+
Sbjct: 213 QKPTENYVDSAIETVININ 231
>sp|Q6PGC1|DHX29_MOUSE ATP-dependent RNA helicase Dhx29 OS=Mus musculus GN=Dhx29 PE=2 SV=1
Length = 1365
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 45/62 (72%), Gaps = 1/62 (1%)
Query: 4 ADFFLIYL-QVIARRQDLKLIVTSATMDADKFSNFFGNVPTFHIPGRTFPVDVFFAKNPV 62
+DF L+ L +++ +R DL LI+ SAT+D+DKFS +F + P I GR++PV+VF ++ V
Sbjct: 710 SDFLLVILKEILQKRSDLHLILMSATVDSDKFSTYFTHCPILRISGRSYPVEVFHLEDIV 769
Query: 63 ED 64
E+
Sbjct: 770 EE 771
>sp|P43329|HRPA_ECOLI ATP-dependent RNA helicase HrpA OS=Escherichia coli (strain K12)
GN=hrpA PE=3 SV=3
Length = 1300
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 46/72 (63%), Gaps = 3/72 (4%)
Query: 5 DFFLIYL-QVIARRQDLKLIVTSATMDADKFSNFFGNVPTFHIPGRTFPVDVFFAKNPVE 63
DF L YL +++ RR DLK+I+TSAT+D ++FS F N P + GRT+PV+V + P+
Sbjct: 207 DFLLGYLKELLPRRPDLKIIITSATIDPERFSRHFNNAPIIEVSGRTYPVEVRY--RPIV 264
Query: 64 DYVDSAVKQALQ 75
+ D + LQ
Sbjct: 265 EEADDTERDQLQ 276
>sp|P36009|DHR2_YEAST Probable ATP-dependent RNA helicase DHR2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=DHR2 PE=1
SV=1
Length = 735
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 47/76 (61%), Gaps = 2/76 (2%)
Query: 4 ADFFLIYLQVIAR--RQDLKLIVTSATMDADKFSNFFGNVPTFHIPGRTFPVDVFFAKNP 61
D L +L+ + + R DL++IV SAT+ A+KFS FF N P + GR F V ++ K P
Sbjct: 212 TDLILGFLKSLIQGPRPDLRIIVMSATLQAEKFSEFFNNAPILFVEGRKFDVKQYYLKAP 271
Query: 62 VEDYVDSAVKQALQIH 77
+D VD+ ++ +QI+
Sbjct: 272 TDDIVDAVIRCCIQIN 287
>sp|A3KMI0|DHX29_XENLA ATP-dependent RNA helicase DHX29 OS=Xenopus laevis GN=dhx29 PE=2
SV=1
Length = 1362
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 44/61 (72%), Gaps = 1/61 (1%)
Query: 4 ADFFLIYL-QVIARRQDLKLIVTSATMDADKFSNFFGNVPTFHIPGRTFPVDVFFAKNPV 62
+DF LI L +++ +R DL L++ SAT+D +KFS++F + P I GRTFPV+VF ++ V
Sbjct: 705 SDFLLIILREILHKRSDLHLVLMSATVDCEKFSSYFTHCPIIRISGRTFPVEVFHLEDVV 764
Query: 63 E 63
E
Sbjct: 765 E 765
>sp|Q80VY9|DHX33_MOUSE Putative ATP-dependent RNA helicase DHX33 OS=Mus musculus GN=Dhx33
PE=1 SV=1
Length = 698
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 37/58 (63%)
Query: 20 LKLIVTSATMDADKFSNFFGNVPTFHIPGRTFPVDVFFAKNPVEDYVDSAVKQALQIH 77
LK+IV SATMD D FS +F P ++ GR P+ +F+ K P +DY+ +A+ QIH
Sbjct: 216 LKVIVMSATMDVDLFSQYFNRAPVLYLEGRQHPIQIFYTKQPQQDYLHAALVSVFQIH 273
>sp|Q7Z478|DHX29_HUMAN ATP-dependent RNA helicase DHX29 OS=Homo sapiens GN=DHX29 PE=1 SV=2
Length = 1369
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 45/62 (72%), Gaps = 1/62 (1%)
Query: 4 ADFFLIYL-QVIARRQDLKLIVTSATMDADKFSNFFGNVPTFHIPGRTFPVDVFFAKNPV 62
+DF LI L +++ +R DL LI+ SAT+D++KFS +F + P I GR++PV+VF ++ +
Sbjct: 711 SDFLLIILKEILQKRSDLHLILMSATVDSEKFSTYFTHCPILRISGRSYPVEVFHLEDII 770
Query: 63 ED 64
E+
Sbjct: 771 EE 772
>sp|Q9H6R0|DHX33_HUMAN Putative ATP-dependent RNA helicase DHX33 OS=Homo sapiens GN=DHX33
PE=1 SV=2
Length = 707
Score = 62.8 bits (151), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 36/58 (62%)
Query: 20 LKLIVTSATMDADKFSNFFGNVPTFHIPGRTFPVDVFFAKNPVEDYVDSAVKQALQIH 77
LK+IV SATMD D FS +F P ++ GR P+ VF+ K P DY+ +A+ QIH
Sbjct: 225 LKVIVMSATMDVDLFSQYFNGAPVLYLEGRQHPIQVFYTKQPQNDYLHAALVSVFQIH 282
>sp|P45018|HRPA_HAEIN ATP-dependent RNA helicase HrpA homolog OS=Haemophilus influenzae
(strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=hrpA PE=3
SV=2
Length = 1304
Score = 62.4 bits (150), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 42/65 (64%), Gaps = 2/65 (3%)
Query: 5 DFFLIYLQVI--ARRQDLKLIVTSATMDADKFSNFFGNVPTFHIPGRTFPVDVFFAKNPV 62
DF L YL+ + RR+DLKLI+TSAT+D ++FS F N P + GRT+PV+V +
Sbjct: 213 DFILGYLKQLLPRRRRDLKLIITSATIDVERFSKHFNNAPIIEVSGRTYPVEVRYRPVVE 272
Query: 63 EDYVD 67
ED D
Sbjct: 273 EDDQD 277
>sp|Q6P158|DHX57_HUMAN Putative ATP-dependent RNA helicase DHX57 OS=Homo sapiens GN=DHX57
PE=1 SV=2
Length = 1386
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 45/60 (75%), Gaps = 1/60 (1%)
Query: 4 ADFFLIYLQ-VIARRQDLKLIVTSATMDADKFSNFFGNVPTFHIPGRTFPVDVFFAKNPV 62
+DF L+ L+ ++++R L++I+ SAT++A+ FS++F + P IPGRTFPVD FF ++ +
Sbjct: 677 SDFLLLVLKDIVSQRPGLQVILMSATLNAELFSDYFNSCPVITIPGRTFPVDQFFLEDAI 736
>sp|Q8VHK9|DHX36_MOUSE Probable ATP-dependent RNA helicase DHX36 OS=Mus musculus GN=Dhx36
PE=2 SV=2
Length = 1001
Score = 60.1 bits (144), Expect = 4e-09, Method: Composition-based stats.
Identities = 25/47 (53%), Positives = 35/47 (74%)
Query: 17 RQDLKLIVTSATMDADKFSNFFGNVPTFHIPGRTFPVDVFFAKNPVE 63
R DLK+I+ SAT++A+KFS +FGN P HIPG TFPV + ++ +E
Sbjct: 350 RSDLKVILMSATLNAEKFSEYFGNCPMIHIPGFTFPVVEYLLEDIIE 396
>sp|Q9H2U1|DHX36_HUMAN Probable ATP-dependent RNA helicase DHX36 OS=Homo sapiens GN=DHX36
PE=1 SV=2
Length = 1008
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 35/47 (74%)
Query: 17 RQDLKLIVTSATMDADKFSNFFGNVPTFHIPGRTFPVDVFFAKNPVE 63
R DLK+I+ SAT++A+KFS +FGN P HIPG TFPV + ++ +E
Sbjct: 357 RSDLKVILMSATLNAEKFSEYFGNCPMIHIPGFTFPVVEYLLEDVIE 403
>sp|Q03319|PRH1_SCHPO Probable ATP-dependent RNA helicase prh1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=prh1 PE=3 SV=2
Length = 719
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Query: 2 FTADFFLIYLQ-VIARRQDLKLIVTSATMDADKFSNFFGNVPTFHIPGRTFPVDVFFAKN 60
D L +++ +I +R L++I+ SAT++A++FS FF +I GR +PV + +
Sbjct: 223 LMTDMLLGFVKKIIKKRPALRVIIMSATLNAERFSEFFDGAEICYISGRQYPVQIHYTYT 282
Query: 61 PVEDYVDSAVKQALQIH 77
P DY+D+ ++ Q+H
Sbjct: 283 PEPDYLDACLRTIFQLH 299
>sp|Q9BKQ8|DHX35_CAEEL Probable ATP-dependent RNA helicase DHX35 homolog OS=Caenorhabditis
elegans GN=Y67D2.6 PE=3 SV=1
Length = 732
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 43/81 (53%), Gaps = 10/81 (12%)
Query: 12 QVIARRQDLKLIVTSATMDADKFSNFF-----GN-----VPTFHIPGRTFPVDVFFAKNP 61
++I R DL++IV+SAT+DA+ F +FF GN + GRT PV V K
Sbjct: 216 KIIQIRNDLRIIVSSATLDAELFKDFFEMNETGNSDKDTAGIISVEGRTHPVAVHHTKTS 275
Query: 62 VEDYVDSAVKQALQIHLIPNP 82
V DY SAV + IH NP
Sbjct: 276 VPDYCQSAVDTVINIHKHENP 296
>sp|Q6P5D3|DHX57_MOUSE Putative ATP-dependent RNA helicase DHX57 OS=Mus musculus GN=Dhx57
PE=2 SV=2
Length = 1388
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 40/60 (66%), Gaps = 1/60 (1%)
Query: 4 ADFFLIYLQ-VIARRQDLKLIVTSATMDADKFSNFFGNVPTFHIPGRTFPVDVFFAKNPV 62
+DF L+ L+ ++ +R L++I+ SAT+DA FS +F P IPGR FPVD FF ++ +
Sbjct: 678 SDFLLLVLKDIVMQRATLQVILMSATLDAGLFSKYFSYCPVITIPGRAFPVDQFFLEDAL 737
>sp|Q6PE54|DHX40_MOUSE Probable ATP-dependent RNA helicase DHX40 OS=Mus musculus GN=Dhx40
PE=2 SV=1
Length = 779
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 40/69 (57%), Gaps = 6/69 (8%)
Query: 16 RRQDLKLIVTSATMDADKFSNFFGNVPTFHIPGRTFPVDVFFAK--NPVED----YVDSA 69
R++ LK++V SATM+ K S FFGN P F IPGR +PV F P + Y+ +
Sbjct: 200 RKEHLKVVVMSATMELAKLSAFFGNCPIFDIPGRLYPVREKFCNLIGPRDRENTAYIQAI 259
Query: 70 VKQALQIHL 78
VK + IHL
Sbjct: 260 VKVTMDIHL 268
>sp|Q5XI69|DHX40_RAT Probable ATP-dependent RNA helicase DHX40 OS=Rattus norvegicus
GN=Dhx40 PE=2 SV=1
Length = 779
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 40/69 (57%), Gaps = 6/69 (8%)
Query: 16 RRQDLKLIVTSATMDADKFSNFFGNVPTFHIPGRTFPVDVFFAK--NPVED----YVDSA 69
R++ LK++V SATM+ K S FFGN P F IPGR +PV F P + Y+ +
Sbjct: 200 RKEHLKVVVMSATMELAKLSAFFGNCPIFDIPGRLYPVREKFCNLIGPRDRENTAYIQAI 259
Query: 70 VKQALQIHL 78
VK + IHL
Sbjct: 260 VKVTMDIHL 268
>sp|Q5R864|DHX40_PONAB Probable ATP-dependent RNA helicase DHX40 OS=Pongo abelii GN=DHX40
PE=2 SV=1
Length = 779
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 40/69 (57%), Gaps = 6/69 (8%)
Query: 16 RRQDLKLIVTSATMDADKFSNFFGNVPTFHIPGRTFPVDVFFAK--NPVED----YVDSA 69
R++ LK++V SATM+ K S FFGN P F IPGR +PV F P + Y+ +
Sbjct: 200 RKEHLKVVVMSATMELAKLSAFFGNCPIFDIPGRLYPVREKFCNLIGPRDRENTAYIQAI 259
Query: 70 VKQALQIHL 78
VK + IHL
Sbjct: 260 VKVTMDIHL 268
>sp|Q8IX18|DHX40_HUMAN Probable ATP-dependent RNA helicase DHX40 OS=Homo sapiens GN=DHX40
PE=1 SV=2
Length = 779
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 40/69 (57%), Gaps = 6/69 (8%)
Query: 16 RRQDLKLIVTSATMDADKFSNFFGNVPTFHIPGRTFPVDVFFAK--NPVED----YVDSA 69
R++ LK++V SATM+ K S FFGN P F IPGR +PV F P + Y+ +
Sbjct: 200 RKEHLKVVVMSATMELAKLSAFFGNCPIFDIPGRLYPVREKFCNLIGPRDRENTAYIQAI 259
Query: 70 VKQALQIHL 78
VK + IHL
Sbjct: 260 VKVTMDIHL 268
>sp|P24785|MLE_DROME Dosage compensation regulator OS=Drosophila melanogaster GN=mle
PE=2 SV=2
Length = 1293
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 44/70 (62%), Gaps = 3/70 (4%)
Query: 3 TADFFLIYLQ-VIARRQDLKLIVTSATMDADKFSNFFGNVPTFHIPGRTFPVDVFFAKNP 61
+DF L+ L+ ++ DL +I+ SAT+D KFS +FG P +PGR FPV FF ++
Sbjct: 515 NSDFLLVILRDMVDTYPDLHVILMSATIDTTKFSKYFGICPVLEVPGRAFPVQQFFLEDI 574
Query: 62 VE--DYVDSA 69
++ D+V SA
Sbjct: 575 IQMTDFVPSA 584
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.327 0.142 0.439
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,050,402
Number of Sequences: 539616
Number of extensions: 2022300
Number of successful extensions: 4481
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 4378
Number of HSP's gapped (non-prelim): 103
length of query: 140
length of database: 191,569,459
effective HSP length: 105
effective length of query: 35
effective length of database: 134,909,779
effective search space: 4721842265
effective search space used: 4721842265
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)