Query psy14926
Match_columns 140
No_of_seqs 152 out of 1266
Neff 6.8
Searched_HMMs 29240
Date Fri Aug 16 15:55:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14926.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14926hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xau_A PRE-mRNA-splicing facto 99.7 1.7E-17 5.8E-22 147.7 12.7 129 2-136 223-360 (773)
2 2p6r_A Afuhel308 helicase; pro 98.9 7.8E-09 2.7E-13 90.2 10.3 125 3-135 159-317 (702)
3 2va8_A SSO2462, SKI2-type heli 98.8 1.8E-08 6.3E-13 87.8 9.8 122 9-135 165-333 (715)
4 2zj8_A DNA helicase, putative 98.5 1.5E-07 5E-12 82.4 6.5 115 18-135 168-315 (720)
5 3l9o_A ATP-dependent RNA helic 97.7 8.2E-05 2.8E-09 68.6 8.0 43 16-58 318-366 (1108)
6 4a4z_A Antiviral helicase SKI2 97.7 0.00011 3.8E-09 67.1 8.0 43 16-58 175-223 (997)
7 3eiq_A Eukaryotic initiation f 97.5 0.00015 5.2E-09 57.8 6.5 112 11-135 205-325 (414)
8 2z0m_A 337AA long hypothetical 97.1 0.0036 1.2E-07 48.2 9.5 107 11-135 151-261 (337)
9 3pey_A ATP-dependent RNA helic 97.1 0.0037 1.3E-07 49.1 9.6 107 16-135 174-288 (395)
10 3fht_A ATP-dependent RNA helic 97.0 0.0021 7E-08 51.0 7.7 107 16-135 197-311 (412)
11 2xgj_A ATP-dependent RNA helic 97.0 0.0016 5.4E-08 59.6 7.7 44 16-59 220-269 (1010)
12 2v1x_A ATP-dependent DNA helic 96.9 0.0024 8.2E-08 55.1 7.8 111 15-135 196-312 (591)
13 1hv8_A Putative ATP-dependent 96.8 0.011 3.7E-07 45.9 10.3 103 16-134 175-282 (367)
14 3fho_A ATP-dependent RNA helic 96.7 0.002 6.8E-08 54.0 5.6 108 16-135 288-402 (508)
15 1fuu_A Yeast initiation factor 96.5 0.0033 1.1E-07 49.6 4.9 108 16-135 190-304 (394)
16 2j0s_A ATP-dependent RNA helic 96.3 0.0061 2.1E-07 48.6 5.6 107 16-135 207-321 (410)
17 3fmp_B ATP-dependent RNA helic 96.2 0.0042 1.4E-07 51.1 4.4 108 16-135 264-378 (479)
18 1xti_A Probable ATP-dependent 96.1 0.073 2.5E-06 41.7 10.9 110 12-135 176-295 (391)
19 3i5x_A ATP-dependent RNA helic 95.9 0.039 1.3E-06 46.1 8.9 112 17-134 262-386 (563)
20 2z83_A Helicase/nucleoside tri 95.8 0.0072 2.4E-07 50.2 4.1 44 3-47 128-171 (459)
21 1oyw_A RECQ helicase, ATP-depe 95.7 0.046 1.6E-06 46.1 8.8 111 11-135 166-281 (523)
22 2i4i_A ATP-dependent RNA helic 95.7 0.033 1.1E-06 44.2 7.4 104 19-135 210-321 (417)
23 2jlq_A Serine protease subunit 95.6 0.0063 2.1E-07 50.3 3.1 47 4-52 127-173 (451)
24 1s2m_A Putative ATP-dependent 95.6 0.1 3.5E-06 41.1 10.1 112 10-135 184-303 (400)
25 3sqw_A ATP-dependent RNA helic 95.4 0.055 1.9E-06 45.7 8.1 111 18-134 212-335 (579)
26 2eyq_A TRCF, transcription-rep 95.1 0.072 2.5E-06 49.3 8.7 107 16-135 748-859 (1151)
27 4f92_B U5 small nuclear ribonu 95.1 0.15 5.1E-06 49.2 10.8 25 16-40 241-266 (1724)
28 4f92_B U5 small nuclear ribonu 95.0 0.098 3.3E-06 50.4 9.5 35 6-40 1069-1105(1724)
29 1gm5_A RECG; helicase, replica 95.0 0.039 1.3E-06 49.3 6.4 109 17-135 514-634 (780)
30 2db3_A ATP-dependent RNA helic 94.9 0.24 8.2E-06 40.3 10.5 104 17-135 234-345 (434)
31 2whx_A Serine protease/ntpase/ 94.4 0.056 1.9E-06 46.8 5.8 45 3-49 293-338 (618)
32 3rc3_A ATP-dependent RNA helic 93.8 0.055 1.9E-06 47.6 4.5 46 81-135 320-368 (677)
33 1yks_A Genome polyprotein [con 93.7 0.094 3.2E-06 43.2 5.5 29 3-32 115-143 (440)
34 2wv9_A Flavivirin protease NS2 93.5 0.18 6.1E-06 44.2 7.1 44 3-48 348-392 (673)
35 2ykg_A Probable ATP-dependent 93.5 0.52 1.8E-05 40.2 9.9 14 17-30 171-184 (696)
36 2v6i_A RNA helicase; membrane, 93.3 0.15 5E-06 41.8 6.0 29 3-32 109-137 (431)
37 1qde_A EIF4A, translation init 92.9 0.1 3.5E-06 38.1 4.1 43 11-53 177-223 (224)
38 3eaq_A Heat resistant RNA depe 92.5 0.062 2.1E-06 39.8 2.5 47 79-135 28-76 (212)
39 1wp9_A ATP-dependent RNA helic 90.5 2.1 7.3E-05 33.6 9.7 28 11-38 148-177 (494)
40 3o8b_A HCV NS3 protease/helica 89.4 0.96 3.3E-05 39.7 7.3 29 3-31 334-362 (666)
41 4gl2_A Interferon-induced heli 88.3 0.37 1.3E-05 41.2 3.8 21 115-135 431-459 (699)
42 3tbk_A RIG-I helicase domain; 87.9 2.6 8.8E-05 34.2 8.5 18 118-135 429-446 (555)
43 3i32_A Heat resistant RNA depe 87.7 0.95 3.3E-05 35.5 5.7 67 55-135 5-73 (300)
44 2pl3_A Probable ATP-dependent 86.5 0.85 2.9E-05 33.4 4.5 39 11-49 193-235 (236)
45 2gxq_A Heat resistant RNA depe 86.2 1.2 4E-05 31.7 5.0 36 10-45 165-204 (207)
46 4a2p_A RIG-I, retinoic acid in 85.7 3.2 0.00011 33.8 8.0 18 118-135 430-447 (556)
47 3dkp_A Probable ATP-dependent 84.9 1.3 4.6E-05 32.5 4.9 33 17-49 208-243 (245)
48 3ber_A Probable ATP-dependent 83.4 1.4 4.8E-05 32.9 4.5 36 11-46 208-247 (249)
49 2oxc_A Probable ATP-dependent 83.3 1.3 4.4E-05 32.5 4.2 36 10-45 188-227 (230)
50 1q0u_A Bstdead; DEAD protein, 80.4 2.3 7.7E-05 30.7 4.6 32 10-41 171-206 (219)
51 3fe2_A Probable ATP-dependent 78.8 2.7 9.2E-05 30.9 4.6 37 11-47 198-238 (242)
52 3bor_A Human initiation factor 78.5 2.6 9E-05 30.9 4.5 29 16-44 201-232 (237)
53 3iuy_A Probable ATP-dependent 77.7 3.2 0.00011 30.0 4.7 33 11-43 189-224 (228)
54 4dad_A Putative pilus assembly 76.2 13 0.00045 24.2 7.2 33 7-39 83-115 (146)
55 3kto_A Response regulator rece 76.2 9.9 0.00034 24.6 6.5 61 7-78 68-128 (136)
56 2vl7_A XPD; helicase, unknown 75.2 2 7E-05 36.1 3.4 11 21-31 321-331 (540)
57 2fsf_A Preprotein translocase 73.9 20 0.00068 32.5 9.5 64 21-90 378-449 (853)
58 1fuk_A Eukaryotic initiation f 72.0 6.5 0.00022 27.1 4.9 55 68-135 19-75 (165)
59 3eul_A Possible nitrate/nitrit 71.4 15 0.00052 24.1 6.6 33 7-39 77-109 (152)
60 3kht_A Response regulator; PSI 71.2 13 0.00044 24.1 6.1 32 7-38 67-100 (144)
61 3hdg_A Uncharacterized protein 70.2 14 0.00048 23.7 6.1 32 7-38 67-98 (137)
62 2oca_A DAR protein, ATP-depend 70.1 11 0.00038 30.6 6.7 19 116-134 373-391 (510)
63 3lua_A Response regulator rece 70.1 11 0.00039 24.3 5.6 33 7-39 67-101 (140)
64 4a2q_A RIG-I, retinoic acid in 69.6 18 0.00063 31.5 8.2 18 118-135 671-688 (797)
65 4e7p_A Response regulator; DNA 69.5 14 0.00047 24.3 6.0 33 7-39 82-114 (150)
66 3jte_A Response regulator rece 69.5 18 0.00061 23.3 6.5 33 7-39 65-97 (143)
67 3ly5_A ATP-dependent RNA helic 69.2 6.7 0.00023 29.4 4.7 28 11-38 223-253 (262)
68 2fwr_A DNA repair protein RAD2 67.5 18 0.00061 29.0 7.3 42 80-134 347-388 (472)
69 1t6n_A Probable ATP-dependent 66.9 7.6 0.00026 27.7 4.5 27 10-36 180-209 (220)
70 3hv2_A Response regulator/HD d 66.1 25 0.00085 23.1 7.0 33 7-39 74-106 (153)
71 1tmy_A CHEY protein, TMY; chem 65.1 16 0.00054 22.7 5.4 31 8-38 64-94 (120)
72 3b2n_A Uncharacterized protein 64.5 24 0.00083 22.5 6.3 31 8-38 66-96 (133)
73 3hzh_A Chemotaxis response reg 64.5 13 0.00045 24.7 5.1 33 7-39 99-131 (157)
74 1dbw_A Transcriptional regulat 63.6 21 0.00072 22.4 5.8 31 8-38 64-94 (126)
75 3oiy_A Reverse gyrase helicase 63.5 14 0.00046 29.1 5.7 12 18-29 192-203 (414)
76 3jux_A Protein translocase sub 63.0 17 0.00057 32.8 6.6 65 20-90 410-482 (822)
77 2rb4_A ATP-dependent RNA helic 62.7 16 0.00054 25.3 5.4 53 73-135 25-79 (175)
78 3cnb_A DNA-binding response re 62.4 26 0.00089 22.3 6.2 31 8-38 71-103 (143)
79 3eod_A Protein HNR; response r 61.8 27 0.00093 22.0 6.3 31 8-38 68-98 (130)
80 3cg0_A Response regulator rece 61.6 27 0.00094 22.1 6.2 29 9-38 73-101 (140)
81 4ddu_A Reverse gyrase; topoiso 60.8 23 0.0008 32.6 7.4 14 18-31 249-262 (1104)
82 3hdv_A Response regulator; PSI 60.6 21 0.00072 22.7 5.5 32 7-38 68-100 (136)
83 2zay_A Response regulator rece 60.3 29 0.001 22.3 6.2 31 8-38 69-101 (147)
84 3fmo_B ATP-dependent RNA helic 59.6 13 0.00046 28.4 4.9 31 16-46 264-297 (300)
85 1vec_A ATP-dependent RNA helic 59.4 9.4 0.00032 26.8 3.7 29 9-38 166-195 (206)
86 3f6c_A Positive transcription 59.4 13 0.00045 23.6 4.2 32 7-38 62-93 (134)
87 3kcn_A Adenylate cyclase homol 59.1 26 0.00089 22.9 5.8 31 8-38 65-95 (151)
88 2qxy_A Response regulator; reg 58.8 31 0.0011 22.1 6.1 32 7-38 63-94 (142)
89 3cfy_A Putative LUXO repressor 58.6 34 0.0011 22.0 6.6 31 8-38 65-95 (137)
90 1t5i_A C_terminal domain of A 58.3 24 0.00083 24.5 5.8 45 81-135 30-76 (172)
91 4a2w_A RIG-I, retinoic acid in 58.3 44 0.0015 29.9 8.7 18 118-135 671-688 (936)
92 3cu5_A Two component transcrip 57.9 19 0.00065 23.4 4.9 23 8-30 66-88 (141)
93 2p6n_A ATP-dependent RNA helic 57.3 26 0.00087 25.0 5.8 21 115-135 79-99 (191)
94 1srr_A SPO0F, sporulation resp 56.7 32 0.0011 21.4 5.8 31 8-38 64-94 (124)
95 4a15_A XPD helicase, ATP-depen 56.5 23 0.00078 30.3 6.3 19 21-39 377-396 (620)
96 3cz5_A Two-component response 56.3 29 0.001 22.6 5.7 32 7-38 67-98 (153)
97 3grc_A Sensor protein, kinase; 55.4 32 0.0011 21.9 5.7 26 9-34 68-95 (140)
98 2qsj_A DNA-binding response re 55.1 21 0.0007 23.4 4.7 32 7-38 66-97 (154)
99 3crn_A Response regulator rece 54.1 39 0.0013 21.4 6.5 31 8-38 64-94 (132)
100 1nkt_A Preprotein translocase 53.6 68 0.0023 29.3 9.0 64 21-90 397-468 (922)
101 1k68_A Phytochrome response re 52.9 40 0.0014 21.1 6.3 21 18-38 84-104 (140)
102 1tf5_A Preprotein translocase 52.8 65 0.0022 29.1 8.7 64 21-90 369-440 (844)
103 2pl1_A Transcriptional regulat 52.6 38 0.0013 20.8 6.9 31 8-38 61-91 (121)
104 1c4o_A DNA nucleotide excision 52.0 45 0.0015 28.7 7.4 98 19-134 380-483 (664)
105 2d7d_A Uvrabc system protein B 52.0 99 0.0034 26.5 9.6 98 19-134 386-489 (661)
106 1qkk_A DCTD, C4-dicarboxylate 51.9 38 0.0013 22.1 5.7 31 8-38 64-94 (155)
107 2qr3_A Two-component system re 51.7 23 0.00078 22.5 4.4 32 7-38 68-99 (140)
108 1k66_A Phytochrome response re 51.6 41 0.0014 21.4 5.8 21 18-38 91-111 (149)
109 2hjv_A ATP-dependent RNA helic 51.1 5.9 0.0002 27.3 1.4 45 81-135 34-80 (163)
110 3r0j_A Possible two component 50.9 56 0.0019 23.5 7.0 33 7-39 83-115 (250)
111 1p2f_A Response regulator; DRR 50.9 44 0.0015 23.3 6.2 32 7-38 59-90 (220)
112 1a04_A Nitrate/nitrite respons 49.9 54 0.0018 22.8 6.5 32 7-38 67-98 (215)
113 1wrb_A DJVLGB; RNA helicase, D 49.3 28 0.00094 25.3 5.0 28 19-46 209-239 (253)
114 2rjn_A Response regulator rece 49.1 48 0.0017 21.5 5.9 32 7-38 67-98 (154)
115 2ipc_A Preprotein translocase 48.6 34 0.0011 31.5 6.2 64 21-90 380-451 (997)
116 3crv_A XPD/RAD3 related DNA he 48.4 40 0.0014 28.1 6.4 20 20-39 316-336 (551)
117 3h5i_A Response regulator/sens 48.2 34 0.0011 22.0 4.9 15 62-76 110-124 (140)
118 2pln_A HP1043, response regula 46.8 41 0.0014 21.3 5.1 30 8-38 75-105 (137)
119 3h1g_A Chemotaxis protein CHEY 46.6 52 0.0018 20.7 5.7 20 18-37 80-99 (129)
120 1kgs_A DRRD, DNA binding respo 46.5 52 0.0018 22.9 6.0 60 7-77 62-121 (225)
121 3snk_A Response regulator CHEY 44.4 28 0.00095 22.2 3.9 30 9-38 77-106 (135)
122 3klo_A Transcriptional regulat 44.1 46 0.0016 23.5 5.4 32 7-38 70-102 (225)
123 1zgz_A Torcad operon transcrip 44.0 54 0.0019 20.1 6.5 17 17-33 71-87 (122)
124 2yjt_D ATP-dependent RNA helic 49.8 4.9 0.00017 28.0 0.0 47 80-135 28-75 (170)
125 2jba_A Phosphate regulon trans 43.4 46 0.0016 20.6 4.9 31 8-38 63-95 (127)
126 3cg4_A Response regulator rece 43.4 28 0.00095 22.2 3.8 14 63-76 114-127 (142)
127 3rqi_A Response regulator prot 43.2 35 0.0012 23.3 4.6 33 7-39 67-99 (184)
128 3nhm_A Response regulator; pro 42.8 60 0.002 20.3 6.3 16 62-77 108-123 (133)
129 3heb_A Response regulator rece 42.7 66 0.0023 20.8 7.5 31 8-38 76-108 (152)
130 3eqz_A Response regulator; str 42.2 61 0.0021 20.2 5.9 24 7-30 62-85 (135)
131 1mvo_A PHOP response regulator 41.5 56 0.0019 20.5 5.1 12 18-29 74-85 (136)
132 1dz3_A Stage 0 sporulation pro 39.2 69 0.0024 20.0 6.7 31 8-38 65-96 (130)
133 1jbe_A Chemotaxis protein CHEY 39.1 68 0.0023 19.8 5.9 20 18-37 78-97 (128)
134 2rdm_A Response regulator rece 38.7 36 0.0012 21.3 3.7 29 8-36 68-96 (132)
135 3ilh_A Two component response 38.7 73 0.0025 20.1 6.7 31 8-38 77-111 (146)
136 3n53_A Response regulator rece 38.5 35 0.0012 21.8 3.7 13 18-30 75-87 (140)
137 1p6q_A CHEY2; chemotaxis, sign 38.2 71 0.0024 19.8 5.5 16 18-33 80-95 (129)
138 3gl9_A Response regulator; bet 37.2 75 0.0026 19.8 5.8 31 8-38 63-95 (122)
139 2r25_B Osmosensing histidine p 37.1 74 0.0025 20.1 5.2 30 9-38 70-100 (133)
140 2kqs_B Death domain-associated 36.1 12 0.00043 18.8 0.8 13 16-28 9-21 (26)
141 1i3c_A Response regulator RCP1 36.1 87 0.003 20.2 7.1 31 8-38 78-110 (149)
142 3a10_A Response regulator; pho 34.7 77 0.0026 19.2 5.3 21 9-29 63-83 (116)
143 1ys7_A Transcriptional regulat 34.6 59 0.002 22.8 4.7 16 62-77 111-126 (233)
144 1zh2_A KDP operon transcriptio 34.5 78 0.0027 19.2 6.4 18 17-34 70-87 (121)
145 1gku_B Reverse gyrase, TOP-RG; 33.7 37 0.0013 31.0 4.1 15 18-32 214-228 (1054)
146 3q9s_A DNA-binding response re 33.5 88 0.003 22.6 5.6 31 7-38 97-127 (249)
147 2qzj_A Two-component response 33.4 93 0.0032 19.7 6.3 19 19-37 75-93 (136)
148 2jgn_A DBX, DDX3, ATP-dependen 33.3 60 0.0021 22.7 4.5 45 81-135 45-91 (185)
149 2ayx_A Sensor kinase protein R 32.9 95 0.0033 22.6 5.8 30 9-38 191-220 (254)
150 3gt7_A Sensor protein; structu 32.6 1E+02 0.0035 20.0 6.6 31 8-38 68-100 (154)
151 1yio_A Response regulatory pro 31.2 63 0.0022 22.2 4.3 25 8-32 65-89 (208)
152 3to5_A CHEY homolog; alpha(5)b 31.2 84 0.0029 21.0 4.8 31 8-38 74-106 (134)
153 2jk1_A HUPR, hydrogenase trans 30.6 70 0.0024 20.3 4.2 28 8-35 61-88 (139)
154 3c3w_A Two component transcrip 30.6 56 0.0019 23.1 4.0 32 7-38 63-94 (225)
155 2bfw_A GLGA glycogen synthase; 30.2 1.1E+02 0.0036 20.7 5.3 37 3-39 52-92 (200)
156 3dzd_A Transcriptional regulat 30.1 1.4E+02 0.0047 23.5 6.6 31 8-38 61-91 (368)
157 2hqr_A Putative transcriptiona 29.3 1.3E+02 0.0044 20.8 5.8 31 7-38 56-87 (223)
158 1dc7_A NTRC, nitrogen regulati 28.4 33 0.0011 21.1 2.2 13 17-29 73-85 (124)
159 1ny5_A Transcriptional regulat 27.0 1.5E+02 0.0052 23.3 6.4 33 7-39 60-92 (387)
160 3luf_A Two-component system re 26.4 1.7E+02 0.0056 21.4 6.1 31 8-38 186-218 (259)
161 2a9o_A Response regulator; ess 24.4 1.2E+02 0.0042 18.2 5.6 14 18-31 71-84 (120)
162 2qvg_A Two component response 24.3 92 0.0031 19.6 3.9 21 18-38 88-108 (143)
163 2h3g_X Biosynthetic protein; p 23.4 2.4E+02 0.0083 21.3 7.3 80 4-88 37-128 (268)
164 2izy_A CAMP-dependent protein 22.5 1.1E+02 0.0039 17.6 3.6 27 3-39 11-38 (54)
165 3i42_A Response regulator rece 22.4 81 0.0028 19.5 3.3 13 17-29 75-87 (127)
166 4ae5_A Signal transduction pro 22.3 16 0.00054 26.4 -0.4 23 8-30 12-34 (167)
167 1xhf_A DYE resistance, aerobic 22.3 1.4E+02 0.0048 18.1 6.1 13 18-30 73-85 (123)
168 2kyg_A CAMP-dependent protein 21.4 1.2E+02 0.0041 17.0 3.6 27 3-39 16-43 (50)
169 3mm4_A Histidine kinase homolo 21.1 1.3E+02 0.0044 20.9 4.4 22 17-38 149-171 (206)
170 3t6k_A Response regulator rece 20.8 1.7E+02 0.0057 18.4 6.1 20 18-37 77-96 (136)
171 1rif_A DAR protein, DNA helica 20.8 49 0.0017 24.5 2.1 14 17-30 250-263 (282)
No 1
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.73 E-value=1.7e-17 Score=147.65 Aligned_cols=129 Identities=30% Similarity=0.530 Sum_probs=107.4
Q ss_pred hhHHHHHHHHHHHHhCCCceEEEecCCCChHHHHhhhCCCCEEEecCCccccceeecCCCccchHHHHHHHHHHHhcCCC
Q psy14926 2 FTADFFLIYLQVIARRQDLKLIVTSATMDADKFSNFFGNVPTFHIPGRTFPVDVFFAKNPVEDYVDSAVKQALQIHLIPN 81 (140)
Q Consensus 2 ~tDllL~llk~~~~~r~dLklVlMSATld~~~f~~yf~~~pvi~i~G~~~pV~~~y~~~~~~d~v~~~~~~v~~i~~~~~ 81 (140)
++|.++++++++...++++++|+||||+|.+.|++||++++++.++|+.|||+++|.+.+..+++..++..+.+++....
T Consensus 223 d~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~~~~~~~~vi~v~gr~~pv~~~~~~~~~~~~~~~~l~~l~~~~~~~~ 302 (773)
T 2xau_A 223 ATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQRYFNDAPLLAVPGRTYPVELYYTPEFQRDYLDSAIRTVLQIHATEE 302 (773)
T ss_dssp HHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHHHHTTSCCEEECCCCCCCEEEECCSSCCSCHHHHHHHHHHHHHHHSC
T ss_pred chHHHHHHHHHHHHhCCCceEEEEeccccHHHHHHHhcCCCcccccCcccceEEEEecCCchhHHHHHHHHHHHHHHhcC
Confidence 67899999999999999999999999999999999999999999999999999999998889999999999999988777
Q ss_pred CCcEEeeCCCc-eeeccccCCchhhHHHHHHH--------hhhhhhccCCCCCHHHHhhhcccc
Q psy14926 82 PDQKYPWPCFQ-KVRFGRYSGPKLRYLGLCIE--------KAQKELALFTTLPLATGRSNFADS 136 (140)
Q Consensus 82 ~GdILVFl~~~-ei~~~~~~~~~~~~i~~~~~--------~~~~~lpLh~~lp~~eQ~~~f~~~ 136 (140)
+|++|||.+++ +++.. ...+..... ....+.++||.+|.++|+++|.+-
T Consensus 303 ~g~iLVF~~~~~~i~~l------~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f 360 (773)
T 2xau_A 303 AGDILLFLTGEDEIEDA------VRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPA 360 (773)
T ss_dssp SCEEEEECSCHHHHHHH------HHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCC
T ss_pred CCCEEEECCCHHHHHHH------HHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhc
Confidence 89999997654 55332 111221110 123367899999999999999763
No 2
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=98.89 E-value=7.8e-09 Score=90.16 Aligned_cols=125 Identities=10% Similarity=-0.007 Sum_probs=77.9
Q ss_pred hHHHHHHHHHHHHhCCCceEEEecCCCC-hHHHHhhhCCCCEEEecCCccccceeecCCCccchHHH---------HHHH
Q psy14926 3 TADFFLIYLQVIARRQDLKLIVTSATMD-ADKFSNFFGNVPTFHIPGRTFPVDVFFAKNPVEDYVDS---------AVKQ 72 (140)
Q Consensus 3 tDllL~llk~~~~~r~dLklVlMSATld-~~~f~~yf~~~pvi~i~G~~~pV~~~y~~~~~~d~v~~---------~~~~ 72 (140)
.|.+++.++ ..++++|+|+||||++ .+.|++|++ ++++..++|.+|++.++...+..++.+. ....
T Consensus 159 ~~~ll~~l~---~~~~~~~ii~lSATl~n~~~~~~~l~-~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (702)
T 2p6r_A 159 LEILVTKMR---RMNKALRVIGLSATAPNVTEIAEWLD-ADYYVSDWRPVPLVEGVLCEGTLELFDGAFSTSRRVKFEEL 234 (702)
T ss_dssp HHHHHHHHH---HHCTTCEEEEEECCCTTHHHHHHHTT-CEEEECCCCSSCEEEEEECSSEEEEEETTEEEEEECCHHHH
T ss_pred HHHHHHHHH---hcCcCceEEEECCCcCCHHHHHHHhC-CCcccCCCCCccceEEEeeCCeeeccCcchhhhhhhhHHHH
Confidence 345555554 3578999999999997 899999997 8999999999999987654332211110 2333
Q ss_pred HHHHhcCCCCCcEEeeCCCc-eeeccc-cCCchh----------------------hHHHHHHHhhhhhhccCCCCCHHH
Q psy14926 73 ALQIHLIPNPDQKYPWPCFQ-KVRFGR-YSGPKL----------------------RYLGLCIEKAQKELALFTTLPLAT 128 (140)
Q Consensus 73 v~~i~~~~~~GdILVFl~~~-ei~~~~-~~~~~~----------------------~~i~~~~~~~~~~lpLh~~lp~~e 128 (140)
+.+.+. ..|++|||.+++ +++... .+...+ ..+..|. ...+.++||.+|.++
T Consensus 235 ~~~~~~--~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~~~v~~~h~~l~~~~ 310 (702)
T 2p6r_A 235 VEECVA--ENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECV--RKGAAFHHAGLLNGQ 310 (702)
T ss_dssp HHHHHH--TTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHH--HTTCCEECTTSCHHH
T ss_pred HHHHHh--cCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHH--hcCeEEecCCCCHHH
Confidence 333332 468999996554 543210 000000 0011111 123566999999999
Q ss_pred Hhhhccc
Q psy14926 129 GRSNFAD 135 (140)
Q Consensus 129 Q~~~f~~ 135 (140)
|+.++..
T Consensus 311 R~~v~~~ 317 (702)
T 2p6r_A 311 RRVVEDA 317 (702)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998764
No 3
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=98.80 E-value=1.8e-08 Score=87.79 Aligned_cols=122 Identities=14% Similarity=0.027 Sum_probs=76.0
Q ss_pred HHHHHHHhCCCceEEEecCCCC-hHHHHhhhCCCCEEEecCCccccceeecCCC--------------ccch--HHHHHH
Q psy14926 9 IYLQVIARRQDLKLIVTSATMD-ADKFSNFFGNVPTFHIPGRTFPVDVFFAKNP--------------VEDY--VDSAVK 71 (140)
Q Consensus 9 llk~~~~~r~dLklVlMSATld-~~~f~~yf~~~pvi~i~G~~~pV~~~y~~~~--------------~~d~--v~~~~~ 71 (140)
.++.++.+.+++|+|+||||++ .+.|++||+ ++++..++|.+|++.++.... ...+ ....+.
T Consensus 165 ~l~~i~~~~~~~~ii~lSATl~n~~~~~~~l~-~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (715)
T 2va8_A 165 VVESVTIRAKRRNLLALSATISNYKQIAKWLG-AEPVATNWRPVPLIEGVIYPERKKKEYNVIFKDNTTKKVHGDDAIIA 243 (715)
T ss_dssp HHHHHHHHHHTSEEEEEESCCTTHHHHHHHHT-CEEEECCCCSSCEEEEEEEECSSTTEEEEEETTSCEEEEESSSHHHH
T ss_pred HHHHHHHhcccCcEEEEcCCCCCHHHHHHHhC-CCccCCCCCCCCceEEEEecCCcccceeeecCcchhhhcccchHHHH
Confidence 4455555555999999999995 999999997 889999999999876542111 1111 133444
Q ss_pred HHHHHhcCCCCCcEEeeCCCc-eeecc-ccCCch----------hhH------------------HHHHHHhhhhhhccC
Q psy14926 72 QALQIHLIPNPDQKYPWPCFQ-KVRFG-RYSGPK----------LRY------------------LGLCIEKAQKELALF 121 (140)
Q Consensus 72 ~v~~i~~~~~~GdILVFl~~~-ei~~~-~~~~~~----------~~~------------------i~~~~~~~~~~lpLh 121 (140)
.+.+.+. ..|++|||.+++ +++.. ..+... ..+ +..+. ...+.++|
T Consensus 244 ~~~~~~~--~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~--~~~v~~~h 319 (715)
T 2va8_A 244 YTLDSLS--KNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLI--SKGVAYHH 319 (715)
T ss_dssp HHHHHHT--TTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHH--TTTEEEEC
T ss_pred HHHHHHh--cCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHH--hcCEEEEC
Confidence 5555543 469999996654 55321 000000 000 11110 02356799
Q ss_pred CCCCHHHHhhhccc
Q psy14926 122 TTLPLATGRSNFAD 135 (140)
Q Consensus 122 ~~lp~~eQ~~~f~~ 135 (140)
|.+|.++|+++|..
T Consensus 320 ~~l~~~~r~~v~~~ 333 (715)
T 2va8_A 320 AGLSKALRDLIEEG 333 (715)
T ss_dssp TTSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 99999999999874
No 4
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=98.50 E-value=1.5e-07 Score=82.36 Aligned_cols=115 Identities=9% Similarity=-0.043 Sum_probs=68.2
Q ss_pred CCceEEEecCCC-ChHHHHhhhCCCCEEEecCCccccceeecCCCccch-------HHHHHHHHHHHhcCCCCCcEEeeC
Q psy14926 18 QDLKLIVTSATM-DADKFSNFFGNVPTFHIPGRTFPVDVFFAKNPVEDY-------VDSAVKQALQIHLIPNPDQKYPWP 89 (140)
Q Consensus 18 ~dLklVlMSATl-d~~~f~~yf~~~pvi~i~G~~~pV~~~y~~~~~~d~-------v~~~~~~v~~i~~~~~~GdILVFl 89 (140)
++.|+|+||||+ |.+.+++||+ ++.+..++|.+|++..+...+..++ .......+.+.+. ..|++|||.
T Consensus 168 ~~~~ii~lSATl~n~~~~~~~l~-~~~~~~~~rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~LVF~ 244 (720)
T 2zj8_A 168 GKAQIIGLSATIGNPEELAEWLN-AELIVSDWRPVKLRRGVFYQGFVTWEDGSIDRFSSWEELVYDAIR--KKKGALIFV 244 (720)
T ss_dssp TTBEEEEEECCCSCHHHHHHHTT-EEEEECCCCSSEEEEEEEETTEEEETTSCEEECSSTTHHHHHHHH--TTCCEEEEC
T ss_pred cCCeEEEEcCCcCCHHHHHHHhC-CcccCCCCCCCcceEEEEeCCeeeccccchhhhhHHHHHHHHHHh--CCCCEEEEe
Confidence 489999999999 7899999996 7788899999998876432221111 1122233333332 358999996
Q ss_pred CCc-eeecc-ccCCchhh---------HHHHHHHh---------h-----hhhhccCCCCCHHHHhhhccc
Q psy14926 90 CFQ-KVRFG-RYSGPKLR---------YLGLCIEK---------A-----QKELALFTTLPLATGRSNFAD 135 (140)
Q Consensus 90 ~~~-ei~~~-~~~~~~~~---------~i~~~~~~---------~-----~~~lpLh~~lp~~eQ~~~f~~ 135 (140)
+++ +++.. ..+..... .+....+. + ..+.++||.+|.++|+.++..
T Consensus 245 ~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~ 315 (720)
T 2zj8_A 245 NMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEEN 315 (720)
T ss_dssp SCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHHHHH
Confidence 654 44321 01000000 00000000 1 125569999999999988764
No 5
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=97.70 E-value=8.2e-05 Score=68.64 Aligned_cols=43 Identities=16% Similarity=0.257 Sum_probs=33.8
Q ss_pred hCCCceEEEecCCC-ChHHHHhhhC-----CCCEEEecCCccccceeec
Q psy14926 16 RRQDLKLIVTSATM-DADKFSNFFG-----NVPTFHIPGRTFPVDVFFA 58 (140)
Q Consensus 16 ~r~dLklVlMSATl-d~~~f~~yf~-----~~pvi~i~G~~~pV~~~y~ 58 (140)
..++.++|+||||+ +...|.+|++ .+.++..+.+..|++.++.
T Consensus 318 l~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~ 366 (1108)
T 3l9o_A 318 LPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLF 366 (1108)
T ss_dssp SCTTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECCCSSCEEEEEE
T ss_pred cCCCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCcccceEEEe
Confidence 56789999999998 6667777764 2667888889899877663
No 6
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=97.65 E-value=0.00011 Score=67.10 Aligned_cols=43 Identities=30% Similarity=0.539 Sum_probs=36.4
Q ss_pred hCCCceEEEecCCC-ChHHHHhhhC-----CCCEEEecCCccccceeec
Q psy14926 16 RRQDLKLIVTSATM-DADKFSNFFG-----NVPTFHIPGRTFPVDVFFA 58 (140)
Q Consensus 16 ~r~dLklVlMSATl-d~~~f~~yf~-----~~pvi~i~G~~~pV~~~y~ 58 (140)
.+++.++|+||||+ |...|.+|++ .+.++..+++.+|++.++.
T Consensus 175 l~~~v~iIlLSAT~~n~~ef~~~l~~~~~~~~~vi~~~~r~~pl~~~v~ 223 (997)
T 4a4z_A 175 LPQHVKFILLSATVPNTYEFANWIGRTKQKNIYVISTPKRPVPLEINIW 223 (997)
T ss_dssp SCTTCEEEEEECCCTTHHHHHHHHHHHHTCCEEEEECSSCSSCEEEEEE
T ss_pred cccCCCEEEEcCCCCChHHHHHHHhcccCCceEEEecCCCCccceEEEe
Confidence 56789999999998 8999999995 4567889999999987753
No 7
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=97.53 E-value=0.00015 Score=57.81 Aligned_cols=112 Identities=12% Similarity=0.145 Sum_probs=59.1
Q ss_pred HHHHH-hCCCceEEEecCCCChHHH---HhhhCCCCEEEecCCccc---cceeecCCCccchHHHHHHHHHHHhcCCCCC
Q psy14926 11 LQVIA-RRQDLKLIVTSATMDADKF---SNFFGNVPTFHIPGRTFP---VDVFFAKNPVEDYVDSAVKQALQIHLIPNPD 83 (140)
Q Consensus 11 k~~~~-~r~dLklVlMSATld~~~f---~~yf~~~pvi~i~G~~~p---V~~~y~~~~~~d~v~~~~~~v~~i~~~~~~G 83 (140)
..++. .+++.++|+||||+..+.. ..|+++...+.+.....+ +...|......+.. ...+..+......+
T Consensus 205 ~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~ 281 (414)
T 3eiq_A 205 YDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWK---LDTLCDLYETLTIT 281 (414)
T ss_dssp HHHHTTSCTTCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCCCCCTTSCCEEEEECSSSTTH---HHHHHHHHHSSCCS
T ss_pred HHHHHhCCCCCeEEEEEEecCHHHHHHHHHHcCCCEEEEecCCccCCCCceEEEEEeChHHhH---HHHHHHHHHhCCCC
Confidence 33333 4589999999999976443 455655444554444322 22333332223322 23334444445668
Q ss_pred cEEeeCCCc-eeeccccCCchhhHHHHH-HHhhhhhhccCCCCCHHHHhhhccc
Q psy14926 84 QKYPWPCFQ-KVRFGRYSGPKLRYLGLC-IEKAQKELALFTTLPLATGRSNFAD 135 (140)
Q Consensus 84 dILVFl~~~-ei~~~~~~~~~~~~i~~~-~~~~~~~lpLh~~lp~~eQ~~~f~~ 135 (140)
.+|||.... +.+. +... .........+||.++.+++++++..
T Consensus 282 ~~lvf~~~~~~~~~----------l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~ 325 (414)
T 3eiq_A 282 QAVIFINTRRKVDW----------LTEKMHARDFTVSAMHGDMDQKERDVIMRE 325 (414)
T ss_dssp SCEEECSCHHHHHH----------HHHHHHTTTCCCEEC---CHHHHHHHHHHH
T ss_pred cEEEEeCCHHHHHH----------HHHHHHhcCCeEEEecCCCCHHHHHHHHHH
Confidence 899996443 3311 1111 1122345679999999999887653
No 8
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=97.09 E-value=0.0036 Score=48.18 Aligned_cols=107 Identities=15% Similarity=0.091 Sum_probs=61.7
Q ss_pred HHHHH-hCCCceEEEecCCCChH---HHHhhhCCCCEEEecCCccccceeecCCCccchHHHHHHHHHHHhcCCCCCcEE
Q psy14926 11 LQVIA-RRQDLKLIVTSATMDAD---KFSNFFGNVPTFHIPGRTFPVDVFFAKNPVEDYVDSAVKQALQIHLIPNPDQKY 86 (140)
Q Consensus 11 k~~~~-~r~dLklVlMSATld~~---~f~~yf~~~pvi~i~G~~~pV~~~y~~~~~~d~v~~~~~~v~~i~~~~~~GdIL 86 (140)
+.++. .....++++||||+..+ .+..|+++...+........++..|.... .++ ...+ +.......+.+|
T Consensus 151 ~~~~~~~~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~----~~~~~~~~~~~l 224 (337)
T 2z0m_A 151 KIILAQTSNRKITGLFSATIPEEIRKVVKDFITNYEEIEACIGLANVEHKFVHVK-DDW-RSKV----QALRENKDKGVI 224 (337)
T ss_dssp HHHHHHCTTCSEEEEEESCCCHHHHHHHHHHSCSCEEEECSGGGGGEEEEEEECS-SSS-HHHH----HHHHTCCCSSEE
T ss_pred HHHHhhCCcccEEEEEeCcCCHHHHHHHHHhcCCceeeecccccCCceEEEEEeC-hHH-HHHH----HHHHhCCCCcEE
Confidence 33444 34567888999999764 46667766555544433344444443321 111 1221 223345678899
Q ss_pred eeCCCceeeccccCCchhhHHHHHHHhhhhhhccCCCCCHHHHhhhccc
Q psy14926 87 PWPCFQKVRFGRYSGPKLRYLGLCIEKAQKELALFTTLPLATGRSNFAD 135 (140)
Q Consensus 87 VFl~~~ei~~~~~~~~~~~~i~~~~~~~~~~lpLh~~lp~~eQ~~~f~~ 135 (140)
||....+. .......+.+...+||.++.+++++++..
T Consensus 225 vf~~~~~~------------~~~l~~~l~~~~~~~~~~~~~~r~~~~~~ 261 (337)
T 2z0m_A 225 VFVRTRNR------------VAKLVRLFDNAIELRGDLPQSVRNRNIDA 261 (337)
T ss_dssp EECSCHHH------------HHHHHTTCTTEEEECTTSCHHHHHHHHHH
T ss_pred EEEcCHHH------------HHHHHHHhhhhhhhcCCCCHHHHHHHHHH
Confidence 99643321 23333444456779999999999887654
No 9
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=97.08 E-value=0.0037 Score=49.07 Aligned_cols=107 Identities=12% Similarity=0.098 Sum_probs=57.5
Q ss_pred hCCCceEEEecCCCCh--HHHH-hhhCCCCEEEecCCcccc---ceeecCCCccchHHHHHHHHHHHhcCCCCCcEEeeC
Q psy14926 16 RRQDLKLIVTSATMDA--DKFS-NFFGNVPTFHIPGRTFPV---DVFFAKNPVEDYVDSAVKQALQIHLIPNPDQKYPWP 89 (140)
Q Consensus 16 ~r~dLklVlMSATld~--~~f~-~yf~~~pvi~i~G~~~pV---~~~y~~~~~~d~v~~~~~~v~~i~~~~~~GdILVFl 89 (140)
.+++.++|+||||+.. ..+. .++++...+.+.....+. ...|...... ......+..+......+.+|||.
T Consensus 174 ~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~lvf~ 250 (395)
T 3pey_A 174 LPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCKNE---ADKFDVLTELYGLMTIGSSIIFV 250 (395)
T ss_dssp SCTTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGGGCSCTTEEEEEEECSSH---HHHHHHHHHHHTTTTSSEEEEEC
T ss_pred CCCCcEEEEEEecCCHHHHHHHHHhCCCCeEEEccccccccccccEEEEEcCch---HHHHHHHHHHHHhccCCCEEEEe
Confidence 4578999999999975 3333 344444445444443322 2223221111 12222333343444568899996
Q ss_pred CCc-eeeccccCCchhhHHHHH-HHhhhhhhccCCCCCHHHHhhhccc
Q psy14926 90 CFQ-KVRFGRYSGPKLRYLGLC-IEKAQKELALFTTLPLATGRSNFAD 135 (140)
Q Consensus 90 ~~~-ei~~~~~~~~~~~~i~~~-~~~~~~~lpLh~~lp~~eQ~~~f~~ 135 (140)
... +.+. +... .........+||.++.+++++++..
T Consensus 251 ~~~~~~~~----------l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~ 288 (395)
T 3pey_A 251 ATKKTANV----------LYGKLKSEGHEVSILHGDLQTQERDRLIDD 288 (395)
T ss_dssp SCHHHHHH----------HHHHHHHTTCCCEEECTTSCHHHHHHHHHH
T ss_pred CCHHHHHH----------HHHHHHhcCCcEEEeCCCCCHHHHHHHHHH
Confidence 443 2211 1111 1222345679999999999887653
No 10
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=97.01 E-value=0.0021 Score=51.04 Aligned_cols=107 Identities=9% Similarity=0.096 Sum_probs=57.2
Q ss_pred hCCCceEEEecCCCChH--HH-HhhhCCCCEEEecCCc---cccceeecCCCccchHHHHHHHHHHHhcCCCCCcEEeeC
Q psy14926 16 RRQDLKLIVTSATMDAD--KF-SNFFGNVPTFHIPGRT---FPVDVFFAKNPVEDYVDSAVKQALQIHLIPNPDQKYPWP 89 (140)
Q Consensus 16 ~r~dLklVlMSATld~~--~f-~~yf~~~pvi~i~G~~---~pV~~~y~~~~~~d~v~~~~~~v~~i~~~~~~GdILVFl 89 (140)
.+++.++++||||+... .+ ..++++...+.+.... ..+...|......+.....+...+. ....+.+|||.
T Consensus 197 ~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~lvf~ 273 (412)
T 3fht_A 197 LPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCNLYG---AITIAQAMIFC 273 (412)
T ss_dssp SCTTCEEEEEESCCCHHHHHHHHHHSSSCEEECCCGGGSSCTTEEEEEEECSSHHHHHHHHHHHHH---HHSSSEEEEEC
T ss_pred CCCCceEEEEEeecCHHHHHHHHHhcCCCeEEeeccccccccCceEEEEEcCChHHHHHHHHHHHh---hcCCCCEEEEe
Confidence 46789999999999864 33 3455544445444332 2222333222222222222333333 23457899996
Q ss_pred CCc-eeeccccCCchhhHHHHHH-HhhhhhhccCCCCCHHHHhhhccc
Q psy14926 90 CFQ-KVRFGRYSGPKLRYLGLCI-EKAQKELALFTTLPLATGRSNFAD 135 (140)
Q Consensus 90 ~~~-ei~~~~~~~~~~~~i~~~~-~~~~~~lpLh~~lp~~eQ~~~f~~ 135 (140)
... +.+. +.... ........+||.++.+++++++..
T Consensus 274 ~~~~~~~~----------l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~ 311 (412)
T 3fht_A 274 HTRKTASW----------LAAELSKEGHQVALLSGEMMVEQRAAVIER 311 (412)
T ss_dssp SSHHHHHH----------HHHHHHHTTCCCEEECTTSCHHHHHHHHHH
T ss_pred CCHHHHHH----------HHHHHHhCCCeEEEecCCCCHHHHHHHHHH
Confidence 443 3311 11111 122345679999999999887653
No 11
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=97.00 E-value=0.0016 Score=59.63 Aligned_cols=44 Identities=16% Similarity=0.247 Sum_probs=34.8
Q ss_pred hCCCceEEEecCCC-ChHHHHhhhC-----CCCEEEecCCccccceeecC
Q psy14926 16 RRQDLKLIVTSATM-DADKFSNFFG-----NVPTFHIPGRTFPVDVFFAK 59 (140)
Q Consensus 16 ~r~dLklVlMSATl-d~~~f~~yf~-----~~pvi~i~G~~~pV~~~y~~ 59 (140)
.+++.++|+||||+ |...|.+|++ .+.++..+++..|++.++.+
T Consensus 220 l~~~~~il~LSATi~n~~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~ 269 (1010)
T 2xgj_A 220 LPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFP 269 (1010)
T ss_dssp SCTTCEEEEEECCCTTHHHHHHHHHHHHTSCEEEEEECCCSSCEEEEEEE
T ss_pred cCCCCeEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCcccceEEEEe
Confidence 45789999999999 6778888875 46677888888888777643
No 12
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=96.92 E-value=0.0024 Score=55.07 Aligned_cols=111 Identities=6% Similarity=0.017 Sum_probs=60.2
Q ss_pred HhCCCceEEEecCCCChH---HHHhhhCCCCEEEecCCccccceeecCCCccchHHHHHHHHHHHhcC-CCCCcEEeeC-
Q psy14926 15 ARRQDLKLIVTSATMDAD---KFSNFFGNVPTFHIPGRTFPVDVFFAKNPVEDYVDSAVKQALQIHLI-PNPDQKYPWP- 89 (140)
Q Consensus 15 ~~r~dLklVlMSATld~~---~f~~yf~~~pvi~i~G~~~pV~~~y~~~~~~d~v~~~~~~v~~i~~~-~~~GdILVFl- 89 (140)
...|+.++|+||||+... .+.++++......+.+......++|.-....+.....+..+.+.... ...+.++||.
T Consensus 196 ~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~~~~r~nl~~~v~~~~~~~~~~~~~l~~~l~~~~~~~~~IVf~~ 275 (591)
T 2v1x_A 196 RQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTASFNRPNLYYEVRQKPSNTEDFIEDIVKLINGRYKGQSGIIYCF 275 (591)
T ss_dssp HHCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEECCCCCTTEEEEEEECCSSHHHHHHHHHHHHTTTTTTCEEEEECS
T ss_pred HhCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEecCCCCcccEEEEEeCCCcHHHHHHHHHHHHHHhccCCCeEEEeC
Confidence 356789999999999874 35566664333333333222334442211112223333444444332 2467899994
Q ss_pred CCceeeccccCCchhhHHHHHH-HhhhhhhccCCCCCHHHHhhhccc
Q psy14926 90 CFQKVRFGRYSGPKLRYLGLCI-EKAQKELALFTTLPLATGRSNFAD 135 (140)
Q Consensus 90 ~~~ei~~~~~~~~~~~~i~~~~-~~~~~~lpLh~~lp~~eQ~~~f~~ 135 (140)
+-++.+. +.... .......++||.++.+++++++..
T Consensus 276 sr~~~e~----------la~~L~~~g~~~~~~h~~l~~~~R~~~~~~ 312 (591)
T 2v1x_A 276 SQKDSEQ----------VTVSLQNLGIHAGAYHANLEPEDKTTVHRK 312 (591)
T ss_dssp SHHHHHH----------HHHHHHHTTCCEEEECTTSCHHHHHHHHHH
T ss_pred cHHHHHH----------HHHHHHHCCCCEEEecCCCCHHHHHHHHHH
Confidence 3333321 11111 223346779999999999887653
No 13
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=96.84 E-value=0.011 Score=45.90 Aligned_cols=103 Identities=10% Similarity=0.083 Sum_probs=59.9
Q ss_pred hCCCceEEEecCCCChHH---HHhhhCCCCEEEecCCccccceeecCCCccchHHHHHHHHHHHhcCCCCCcEEeeCCC-
Q psy14926 16 RRQDLKLIVTSATMDADK---FSNFFGNVPTFHIPGRTFPVDVFFAKNPVEDYVDSAVKQALQIHLIPNPDQKYPWPCF- 91 (140)
Q Consensus 16 ~r~dLklVlMSATld~~~---f~~yf~~~pvi~i~G~~~pV~~~y~~~~~~d~v~~~~~~v~~i~~~~~~GdILVFl~~- 91 (140)
.+++.++++||||+..+. +..|+++...+.... ...++..|......+.+... .++. ....+.+|||...
T Consensus 175 ~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l----~~~l-~~~~~~~lvf~~~~ 248 (367)
T 1hv8_A 175 CNKDKRILLFSATMPREILNLAKKYMGDYSFIKAKI-NANIEQSYVEVNENERFEAL----CRLL-KNKEFYGLVFCKTK 248 (367)
T ss_dssp SCSSCEEEEECSSCCHHHHHHHHHHCCSEEEEECCS-SSSSEEEEEECCGGGHHHHH----HHHH-CSTTCCEEEECSSH
T ss_pred CCCCceEEEEeeccCHHHHHHHHHHcCCCeEEEecC-CCCceEEEEEeChHHHHHHH----HHHH-hcCCCcEEEEECCH
Confidence 457899999999998653 456777555444433 24555555444344444332 2222 2456789999543
Q ss_pred ceeeccccCCchhhHHHHHH-HhhhhhhccCCCCCHHHHhhhcc
Q psy14926 92 QKVRFGRYSGPKLRYLGLCI-EKAQKELALFTTLPLATGRSNFA 134 (140)
Q Consensus 92 ~ei~~~~~~~~~~~~i~~~~-~~~~~~lpLh~~lp~~eQ~~~f~ 134 (140)
++.+. +.... ........+||.++.++++.++.
T Consensus 249 ~~~~~----------l~~~L~~~~~~~~~~~~~~~~~~r~~~~~ 282 (367)
T 1hv8_A 249 RDTKE----------LASMLRDIGFKAGAIHGDLSQSQREKVIR 282 (367)
T ss_dssp HHHHH----------HHHHHHHTTCCEEEECSSSCHHHHHHHHH
T ss_pred HHHHH----------HHHHHHhcCCCeEEeeCCCCHHHHHHHHH
Confidence 33311 11111 12234566999999999987764
No 14
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=96.73 E-value=0.002 Score=54.05 Aligned_cols=108 Identities=11% Similarity=0.123 Sum_probs=51.0
Q ss_pred hCCCceEEEecCCCC--hHHHHhhh-CCCCEEEecCCccccc---eeecCCCccchHHHHHHHHHHHhcCCCCCcEEeeC
Q psy14926 16 RRQDLKLIVTSATMD--ADKFSNFF-GNVPTFHIPGRTFPVD---VFFAKNPVEDYVDSAVKQALQIHLIPNPDQKYPWP 89 (140)
Q Consensus 16 ~r~dLklVlMSATld--~~~f~~yf-~~~pvi~i~G~~~pV~---~~y~~~~~~d~v~~~~~~v~~i~~~~~~GdILVFl 89 (140)
.+++.++|+||||+. .+.+.+.| ++...+.+..+.++.+ ..|......+ .....+..+......+.+|||.
T Consensus 288 ~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~---~k~~~l~~ll~~~~~~~~LVF~ 364 (508)
T 3fho_A 288 LPRNTQIVLFSATFSERVEKYAERFAPNANEIRLKTEELSVEGIKQLYMDCQSEE---HKYNVLVELYGLLTIGQSIIFC 364 (508)
T ss_dssp SCTTCEEEEEESCCSTHHHHHHHHHSTTCEEECCCCCC----CCCCEEEEC--CH---HHHHHHHHHHC---CCCEEEBC
T ss_pred CCcCCeEEEEeCCCCHHHHHHHHHhcCCCeEEEeccccCCcccceEEEEECCchH---HHHHHHHHHHHhcCCCcEEEEE
Confidence 456899999999997 45555554 4444455555444322 2222111111 2223333444444568899995
Q ss_pred CCc-eeeccccCCchhhHHHHHHHhhhhhhccCCCCCHHHHhhhccc
Q psy14926 90 CFQ-KVRFGRYSGPKLRYLGLCIEKAQKELALFTTLPLATGRSNFAD 135 (140)
Q Consensus 90 ~~~-ei~~~~~~~~~~~~i~~~~~~~~~~lpLh~~lp~~eQ~~~f~~ 135 (140)
... +.+. +. ............+||.++..++++++..
T Consensus 365 ~s~~~a~~-------l~--~~L~~~~~~v~~~hg~~~~~~R~~il~~ 402 (508)
T 3fho_A 365 KKKDTAEE-------IA--RRMTADGHTVACLTGNLEGAQRDAIMDS 402 (508)
T ss_dssp SSTTTTTH-------HH--HHHTTTTCCCCEEC-----CTTGGGTHH
T ss_pred CCHHHHHH-------HH--HHHHhCCCcEEEEeCCCCHHHHHHHHHH
Confidence 433 3311 11 1111223345669999999998887653
No 15
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=96.45 E-value=0.0033 Score=49.56 Aligned_cols=108 Identities=18% Similarity=0.206 Sum_probs=21.5
Q ss_pred hCCCceEEEecCCCChH---HHHhhhCCCCEEEecCCccc---cceeecCCCccchHHHHHHHHHHHhcCCCCCcEEeeC
Q psy14926 16 RRQDLKLIVTSATMDAD---KFSNFFGNVPTFHIPGRTFP---VDVFFAKNPVEDYVDSAVKQALQIHLIPNPDQKYPWP 89 (140)
Q Consensus 16 ~r~dLklVlMSATld~~---~f~~yf~~~pvi~i~G~~~p---V~~~y~~~~~~d~v~~~~~~v~~i~~~~~~GdILVFl 89 (140)
..++.++++||||+... ....++++...+.+.....+ +..+|......++....+..+++ ....+.+|||.
T Consensus 190 ~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~lVf~ 266 (394)
T 1fuu_A 190 LPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEEEYKYECLTDLYD---SISVTQAVIFC 266 (394)
T ss_dssp SCTTCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC--------------------------------------------
T ss_pred CCCCceEEEEEEecCHHHHHHHHHhcCCCeEEEecCccccCCCceEEEEEcCchhhHHHHHHHHHh---cCCCCcEEEEE
Confidence 45789999999999853 34456654433444333221 22222222222222222222222 23457899995
Q ss_pred C-CceeeccccCCchhhHHHHHHHhhhhhhccCCCCCHHHHhhhccc
Q psy14926 90 C-FQKVRFGRYSGPKLRYLGLCIEKAQKELALFTTLPLATGRSNFAD 135 (140)
Q Consensus 90 ~-~~ei~~~~~~~~~~~~i~~~~~~~~~~lpLh~~lp~~eQ~~~f~~ 135 (140)
. .++.+.. ...++ ........+||.++.++++.++..
T Consensus 267 ~~~~~~~~l---~~~L~------~~~~~~~~~~~~~~~~~r~~~~~~ 304 (394)
T 1fuu_A 267 NTRRKVEEL---TTKLR------NDKFTVSAIYSDLPQQERDTIMKE 304 (394)
T ss_dssp -----------------------------------------------
T ss_pred CCHHHHHHH---HHHHH------HcCCeEEEeeCCCCHHHHHHHHHH
Confidence 4 3443221 11111 112335669999999998877653
No 16
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=96.27 E-value=0.0061 Score=48.62 Aligned_cols=107 Identities=13% Similarity=0.108 Sum_probs=56.3
Q ss_pred hCCCceEEEecCCCChHH---HHhhhCCCCEEEecCCc---cccceeecCCCccchHHHHHHHHHHHhcCCCCCcEEeeC
Q psy14926 16 RRQDLKLIVTSATMDADK---FSNFFGNVPTFHIPGRT---FPVDVFFAKNPVEDYVDSAVKQALQIHLIPNPDQKYPWP 89 (140)
Q Consensus 16 ~r~dLklVlMSATld~~~---f~~yf~~~pvi~i~G~~---~pV~~~y~~~~~~d~v~~~~~~v~~i~~~~~~GdILVFl 89 (140)
..++.++++||||+..+. ...|+++...+.+.... ..+..+|......++-...+..++..+ ..+.+|||.
T Consensus 207 ~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~---~~~~~lVf~ 283 (410)
T 2j0s_A 207 LPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL---TITQAVIFC 283 (410)
T ss_dssp SCTTCEEEEEESCCCHHHHTTGGGTCSSCEEECCCGGGCSCTTEEEEEEEESSTTHHHHHHHHHHHHH---TSSEEEEEC
T ss_pred CccCceEEEEEcCCCHHHHHHHHHHcCCCEEEEecCccccCCCceEEEEEeCcHHhHHHHHHHHHHhc---CCCcEEEEE
Confidence 457899999999997643 23455543334333322 222333332222332233333333332 356899995
Q ss_pred CCc-eeeccccCCchhhHHHHH-HHhhhhhhccCCCCCHHHHhhhccc
Q psy14926 90 CFQ-KVRFGRYSGPKLRYLGLC-IEKAQKELALFTTLPLATGRSNFAD 135 (140)
Q Consensus 90 ~~~-ei~~~~~~~~~~~~i~~~-~~~~~~~lpLh~~lp~~eQ~~~f~~ 135 (140)
... +.+. +... .........+||.++..++++++..
T Consensus 284 ~~~~~~~~----------l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~ 321 (410)
T 2j0s_A 284 NTKRKVDW----------LTEKMREANFTVSSMHGDMPQKERESIMKE 321 (410)
T ss_dssp SSHHHHHH----------HHHHHHHTTCCCEEECTTSCHHHHHHHHHH
T ss_pred cCHHHHHH----------HHHHHHhCCCceEEeeCCCCHHHHHHHHHH
Confidence 433 3211 1111 1223346679999999999887653
No 17
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=96.20 E-value=0.0042 Score=51.08 Aligned_cols=108 Identities=8% Similarity=0.085 Sum_probs=21.6
Q ss_pred hCCCceEEEecCCCChH--HHH-hhhCCCCEEEecCCccc---cceeecCCCccchHHHHHHHHHHHhcCCCCCcEEeeC
Q psy14926 16 RRQDLKLIVTSATMDAD--KFS-NFFGNVPTFHIPGRTFP---VDVFFAKNPVEDYVDSAVKQALQIHLIPNPDQKYPWP 89 (140)
Q Consensus 16 ~r~dLklVlMSATld~~--~f~-~yf~~~pvi~i~G~~~p---V~~~y~~~~~~d~v~~~~~~v~~i~~~~~~GdILVFl 89 (140)
..++.++|+||||+..+ .+. .++.+...+.+...... ++..|......++ ....+..+......+.+|||.
T Consensus 264 ~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~lvF~ 340 (479)
T 3fmp_B 264 LPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDE---KFQALCNLYGAITIAQAMIFC 340 (479)
T ss_dssp SCTTSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC---------------------------------------------
T ss_pred CCccceEEEEeCCCCHHHHHHHHHHcCCCeEEeccccccCcCCceEEEEEeCCHHH---HHHHHHHHHhhccCCceEEEe
Confidence 45689999999999865 333 45555445555443221 1122221111111 122223333333457899994
Q ss_pred C-CceeeccccCCchhhHHHHHHHhhhhhhccCCCCCHHHHhhhccc
Q psy14926 90 C-FQKVRFGRYSGPKLRYLGLCIEKAQKELALFTTLPLATGRSNFAD 135 (140)
Q Consensus 90 ~-~~ei~~~~~~~~~~~~i~~~~~~~~~~lpLh~~lp~~eQ~~~f~~ 135 (140)
+ -.+.+.. ...+.. .......+||.++..++++++..
T Consensus 341 ~s~~~~~~l---~~~L~~------~~~~v~~lh~~~~~~~R~~~~~~ 378 (479)
T 3fmp_B 341 HTRKTASWL---AAELSK------EGHQVALLSGEMMVEQRAAVIER 378 (479)
T ss_dssp -----------------------------------------------
T ss_pred CcHHHHHHH---HHHHHh------CCccEEEecCCCCHHHHHHHHHH
Confidence 4 3333221 111111 12345679999999998887653
No 18
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=96.07 E-value=0.073 Score=41.72 Aligned_cols=110 Identities=12% Similarity=0.179 Sum_probs=57.8
Q ss_pred HHHH-hCCCceEEEecCCCChH---HHHhhhCCCCEEEecCCc----cccceeecCCCccchHHHHHHHHHHHhcCCCCC
Q psy14926 12 QVIA-RRQDLKLIVTSATMDAD---KFSNFFGNVPTFHIPGRT----FPVDVFFAKNPVEDYVDSAVKQALQIHLIPNPD 83 (140)
Q Consensus 12 ~~~~-~r~dLklVlMSATld~~---~f~~yf~~~pvi~i~G~~----~pV~~~y~~~~~~d~v~~~~~~v~~i~~~~~~G 83 (140)
.++. ..++.++++||||+... .+..++++...+.+.... ..+...|......+.. ..+...+.. ...+
T Consensus 176 ~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~---~~~~ 251 (391)
T 1xti_A 176 EIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKN-RKLFDLLDV---LEFN 251 (391)
T ss_dssp HHHHTSCSSSEEEEEESSCCSTHHHHHHHHCSSCEEEECCCCCCCCCTTCEEEEEECCGGGHH-HHHHHHHHH---SCCS
T ss_pred HHHhhCCCCceEEEEEeeCCHHHHHHHHHHcCCCeEEEecCccccCcccceEEEEEcCchhHH-HHHHHHHHh---cCCC
Confidence 3344 34588999999999643 344566544444444322 2233333332222222 233333333 2467
Q ss_pred cEEeeCCCc-eeeccccCCchhhHHHHHH-HhhhhhhccCCCCCHHHHhhhccc
Q psy14926 84 QKYPWPCFQ-KVRFGRYSGPKLRYLGLCI-EKAQKELALFTTLPLATGRSNFAD 135 (140)
Q Consensus 84 dILVFl~~~-ei~~~~~~~~~~~~i~~~~-~~~~~~lpLh~~lp~~eQ~~~f~~ 135 (140)
.+|||.... +.+. +.... ........+||.++.++++.++..
T Consensus 252 ~~lvf~~~~~~~~~----------l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~ 295 (391)
T 1xti_A 252 QVVIFVKSVQRCIA----------LAQLLVEQNFPAIAIHRGMPQEERLSRYQQ 295 (391)
T ss_dssp EEEEECSCHHHHHH----------HHHHHHHTTCCEEEECTTSCHHHHHHHHHH
T ss_pred cEEEEeCcHHHHHH----------HHHHHHhCCCcEEEEeCCCCHHHHHHHHHH
Confidence 899995433 2211 11111 122335669999999998887653
No 19
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=95.87 E-value=0.039 Score=46.14 Aligned_cols=112 Identities=14% Similarity=0.069 Sum_probs=54.3
Q ss_pred CCCceEEEecCCCCh--HHHHhhhCCC-CEEEecCCc-------cccceeec-CCCccchHHHHHHHHHHHh-cCCCCCc
Q psy14926 17 RQDLKLIVTSATMDA--DKFSNFFGNV-PTFHIPGRT-------FPVDVFFA-KNPVEDYVDSAVKQALQIH-LIPNPDQ 84 (140)
Q Consensus 17 r~dLklVlMSATld~--~~f~~yf~~~-pvi~i~G~~-------~pV~~~y~-~~~~~d~v~~~~~~v~~i~-~~~~~Gd 84 (140)
.++.++++||||+.. ..+...+.+. ..+.+.... ..+...+. .....+.....+..+.... .....+.
T Consensus 262 ~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 341 (563)
T 3i5x_A 262 ADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYK 341 (563)
T ss_dssp TTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCE
T ss_pred ccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCccccccCceEEEECchhHhhHHHHHHHHHHHHhhcCCCCc
Confidence 358899999999984 4455444333 333322110 11111111 1111223333344443322 2345678
Q ss_pred EEeeCCC-ceeeccccCCchhhHHHHHHHhhhhhhccCCCCCHHHHhhhcc
Q psy14926 85 KYPWPCF-QKVRFGRYSGPKLRYLGLCIEKAQKELALFTTLPLATGRSNFA 134 (140)
Q Consensus 85 ILVFl~~-~ei~~~~~~~~~~~~i~~~~~~~~~~lpLh~~lp~~eQ~~~f~ 134 (140)
+|||... .+.+. ....+............+||.++..++.+++.
T Consensus 342 ~iVF~~s~~~~~~------l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~ 386 (563)
T 3i5x_A 342 AIIFAPTVKFTSF------LCSILKNEFKKDLPILEFHGKITQNKRTSLVK 386 (563)
T ss_dssp EEEECSCHHHHHH------HHHHHHHHHTTTSCEEEESTTSCHHHHHHHHH
T ss_pred EEEEcCcHHHHHH------HHHHHHHhccCCceEEEecCCCCHHHHHHHHH
Confidence 9999543 33211 11111111111233566999999999988765
No 20
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=95.81 E-value=0.0072 Score=50.17 Aligned_cols=44 Identities=11% Similarity=-0.054 Sum_probs=29.0
Q ss_pred hHHHHHHHHHHHHhCCCceEEEecCCCChHHHHhhhCCCCEEEec
Q psy14926 3 TADFFLIYLQVIARRQDLKLIVTSATMDADKFSNFFGNVPTFHIP 47 (140)
Q Consensus 3 tDllL~llk~~~~~r~dLklVlMSATld~~~f~~yf~~~pvi~i~ 47 (140)
+++.++++++.. .+++.++|+||||++.+...-...+.|+..++
T Consensus 128 ~~~~~~~~~~~~-~~~~~~~il~SAT~~~~~~~~~~~~~pi~~~~ 171 (459)
T 2z83_A 128 SIAARGYIATKV-ELGEAAAIFMTATPPGTTDPFPDSNAPIHDLQ 171 (459)
T ss_dssp HHHHHHHHHHHH-HTTSCEEEEECSSCTTCCCSSCCCSSCEEEEE
T ss_pred hhHHHHHHHHHh-ccCCccEEEEEcCCCcchhhhccCCCCeEEec
Confidence 477778877754 35789999999999855321112346666544
No 21
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=95.74 E-value=0.046 Score=46.13 Aligned_cols=111 Identities=17% Similarity=0.097 Sum_probs=61.4
Q ss_pred HHHHHhCCCceEEEecCCCChHH---HHhhhC-CCCEEEecCCccccceeecCCCccchHHHHHHHHHHHhcCCCCCcEE
Q psy14926 11 LQVIARRQDLKLIVTSATMDADK---FSNFFG-NVPTFHIPGRTFPVDVFFAKNPVEDYVDSAVKQALQIHLIPNPDQKY 86 (140)
Q Consensus 11 k~~~~~r~dLklVlMSATld~~~---f~~yf~-~~pvi~i~G~~~pV~~~y~~~~~~d~v~~~~~~v~~i~~~~~~GdIL 86 (140)
.++....|+.+++.||||++... +.++++ +.|.+.+.+...| .+.|.-....+.....+ ..+.. ...+.+|
T Consensus 166 ~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~-~l~~~v~~~~~~~~~l~-~~l~~---~~~~~~I 240 (523)
T 1oyw_A 166 GQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSFDRP-NIRYMLMEKFKPLDQLM-RYVQE---QRGKSGI 240 (523)
T ss_dssp GGHHHHCTTSCEEEEESCCCHHHHHHHHHHHTCCSCEEEECCCCCT-TEEEEEEECSSHHHHHH-HHHHH---TTTCCEE
T ss_pred HHHHHhCCCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEeCCCCCC-ceEEEEEeCCCHHHHHH-HHHHh---cCCCcEE
Confidence 34445678999999999998753 455554 3566666554433 34443222233333322 22222 2456899
Q ss_pred eeCC-CceeeccccCCchhhHHHHHHHhhhhhhccCCCCCHHHHhhhccc
Q psy14926 87 PWPC-FQKVRFGRYSGPKLRYLGLCIEKAQKELALFTTLPLATGRSNFAD 135 (140)
Q Consensus 87 VFl~-~~ei~~~~~~~~~~~~i~~~~~~~~~~lpLh~~lp~~eQ~~~f~~ 135 (140)
||.. -++.+.. ...+ ........++||.++.+++++++..
T Consensus 241 Vf~~sr~~~e~l------~~~L---~~~g~~~~~~h~~l~~~~R~~~~~~ 281 (523)
T 1oyw_A 241 IYCNSRAKVEDT------AARL---QSKGISAAAYHAGLENNVRADVQEK 281 (523)
T ss_dssp EECSSHHHHHHH------HHHH---HHTTCCEEEECTTSCHHHHHHHHHH
T ss_pred EEeCCHHHHHHH------HHHH---HHCCCCEEEecCCCCHHHHHHHHHH
Confidence 9953 3333110 0111 1123345679999999998877643
No 22
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=95.67 E-value=0.033 Score=44.22 Aligned_cols=104 Identities=11% Similarity=-0.031 Sum_probs=51.2
Q ss_pred CceEEEecCCCCh--HHHHhhhCCCCEEEecCCcc----ccceeecCCCccchHHHHHHHHHHHhcCCCCCcEEeeCCCc
Q psy14926 19 DLKLIVTSATMDA--DKFSNFFGNVPTFHIPGRTF----PVDVFFAKNPVEDYVDSAVKQALQIHLIPNPDQKYPWPCFQ 92 (140)
Q Consensus 19 dLklVlMSATld~--~~f~~yf~~~pvi~i~G~~~----pV~~~y~~~~~~d~v~~~~~~v~~i~~~~~~GdILVFl~~~ 92 (140)
+.++++||||+.. ..+...|.+.++....++.. .+...|......+.. ..+..++.. ....+.+|||....
T Consensus 210 ~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~l~~~l~~--~~~~~~~lVf~~~~ 286 (417)
T 2i4i_A 210 VRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDKR-SFLLDLLNA--TGKDSLTLVFVETK 286 (417)
T ss_dssp TBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC----CCSSEEEEEEECCGGGHH-HHHHHHHHT--CCTTCEEEEECSSH
T ss_pred CcEEEEEEEeCCHHHHHHHHHHcCCCEEEEeCCCCCCccCceEEEEEeccHhHH-HHHHHHHHh--cCCCCeEEEEECCH
Confidence 6889999999964 33443333344432222211 122222221122222 222233322 23467799996443
Q ss_pred -eeeccccCCchhhHHHHHH-HhhhhhhccCCCCCHHHHhhhccc
Q psy14926 93 -KVRFGRYSGPKLRYLGLCI-EKAQKELALFTTLPLATGRSNFAD 135 (140)
Q Consensus 93 -ei~~~~~~~~~~~~i~~~~-~~~~~~lpLh~~lp~~eQ~~~f~~ 135 (140)
+.+. +.... ........+||.++.+++++++..
T Consensus 287 ~~~~~----------l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~ 321 (417)
T 2i4i_A 287 KGADS----------LEDFLYHEGYACTSIHGDRSQRDREEALHQ 321 (417)
T ss_dssp HHHHH----------HHHHHHHTTCCEEEECTTSCHHHHHHHHHH
T ss_pred HHHHH----------HHHHHHHCCCCeeEecCCCCHHHHHHHHHH
Confidence 3211 11111 122345669999999999887653
No 23
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=95.63 E-value=0.0063 Score=50.34 Aligned_cols=47 Identities=17% Similarity=0.001 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHhCCCceEEEecCCCChHHHHhhhCCCCEEEecCCccc
Q psy14926 4 ADFFLIYLQVIARRQDLKLIVTSATMDADKFSNFFGNVPTFHIPGRTFP 52 (140)
Q Consensus 4 DllL~llk~~~~~r~dLklVlMSATld~~~f~~yf~~~pvi~i~G~~~p 52 (140)
+.++.++... ...++.++|+||||++.+....++++.+++.++ +.+|
T Consensus 127 ~~~~~~~~~~-~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~-~~~p 173 (451)
T 2jlq_A 127 VAARGYISTR-VEMGEAAAIFMTATPPGSTDPFPQSNSPIEDIE-REIP 173 (451)
T ss_dssp HHHHHHHHHH-HHTTSCEEEEECSSCTTCCCSSCCCSSCEEEEE-CCCC
T ss_pred HHHHHHHHHh-hcCCCceEEEEccCCCccchhhhcCCCceEecC-ccCC
Confidence 4444444332 246789999999999876666666677777665 4455
No 24
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=95.61 E-value=0.1 Score=41.14 Aligned_cols=112 Identities=9% Similarity=0.046 Sum_probs=58.0
Q ss_pred HHHHHH-hCCCceEEEecCCCChHH---HHhhhCCCCEEEecCCc--cccceeecCCCccchHHHHHHHHHHHhcCCCCC
Q psy14926 10 YLQVIA-RRQDLKLIVTSATMDADK---FSNFFGNVPTFHIPGRT--FPVDVFFAKNPVEDYVDSAVKQALQIHLIPNPD 83 (140)
Q Consensus 10 lk~~~~-~r~dLklVlMSATld~~~---f~~yf~~~pvi~i~G~~--~pV~~~y~~~~~~d~v~~~~~~v~~i~~~~~~G 83 (140)
++.+.. ..++.++++||||+.... +..++++...+.+.... ..+..+|......+.. ..+..++.. ...+
T Consensus 184 ~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~-~~l~~~~~~---~~~~ 259 (400)
T 1s2m_A 184 IEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLMEELTLKGITQYYAFVEERQKL-HCLNTLFSK---LQIN 259 (400)
T ss_dssp HHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEESCCSSCBCTTEEEEEEECCGGGHH-HHHHHHHHH---SCCS
T ss_pred HHHHHHhCCcCceEEEEEecCCHHHHHHHHHHcCCCeEEEeccccccCCceeEEEEechhhHH-HHHHHHHhh---cCCC
Confidence 444444 346889999999997532 44555543333333322 1222233222222222 233333332 3467
Q ss_pred cEEeeCCCc-eeeccccCCchhhHHHHHH-HhhhhhhccCCCCCHHHHhhhccc
Q psy14926 84 QKYPWPCFQ-KVRFGRYSGPKLRYLGLCI-EKAQKELALFTTLPLATGRSNFAD 135 (140)
Q Consensus 84 dILVFl~~~-ei~~~~~~~~~~~~i~~~~-~~~~~~lpLh~~lp~~eQ~~~f~~ 135 (140)
.+|||.... +.+. +.... ........+||.++..+++.++..
T Consensus 260 ~~lVf~~~~~~~~~----------l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~ 303 (400)
T 1s2m_A 260 QAIIFCNSTNRVEL----------LAKKITDLGYSCYYSHARMKQQERNKVFHE 303 (400)
T ss_dssp EEEEECSSHHHHHH----------HHHHHHHHTCCEEEECTTSCHHHHHHHHHH
T ss_pred cEEEEEecHHHHHH----------HHHHHHhcCCCeEEecCCCCHHHHHHHHHH
Confidence 899996443 3311 11111 122345669999999999887653
No 25
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=95.38 E-value=0.055 Score=45.73 Aligned_cols=111 Identities=14% Similarity=0.090 Sum_probs=53.0
Q ss_pred CCceEEEecCCCCh--HHHHh-hhCCCCEEEecCCc-------cccceeecC-CCccchHHHHHHHHHHH-hcCCCCCcE
Q psy14926 18 QDLKLIVTSATMDA--DKFSN-FFGNVPTFHIPGRT-------FPVDVFFAK-NPVEDYVDSAVKQALQI-HLIPNPDQK 85 (140)
Q Consensus 18 ~dLklVlMSATld~--~~f~~-yf~~~pvi~i~G~~-------~pV~~~y~~-~~~~d~v~~~~~~v~~i-~~~~~~GdI 85 (140)
++.++++||||+.. ..+.. ++++...+.+.... ..+...+.. ....+.....+..+... ......+.+
T Consensus 212 ~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 291 (579)
T 3sqw_A 212 DNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKA 291 (579)
T ss_dssp TCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEE
T ss_pred cCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCccccccccccceEEEEecchhhhHHHHHHHHHHHHhhcCCCCcE
Confidence 47899999999984 33433 44433333332211 111111111 11122233333333332 223456789
Q ss_pred EeeCCC-ceeeccccCCchhhHHHHHHHhhhhhhccCCCCCHHHHhhhcc
Q psy14926 86 YPWPCF-QKVRFGRYSGPKLRYLGLCIEKAQKELALFTTLPLATGRSNFA 134 (140)
Q Consensus 86 LVFl~~-~ei~~~~~~~~~~~~i~~~~~~~~~~lpLh~~lp~~eQ~~~f~ 134 (140)
|||... .+.+. ....+............+||.++.+++.+++.
T Consensus 292 iVF~~t~~~~~~------l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~ 335 (579)
T 3sqw_A 292 IIFAPTVKFTSF------LCSILKNEFKKDLPILEFHGKITQNKRTSLVK 335 (579)
T ss_dssp EEECSSHHHHHH------HHHHHHHHHTTTSCEEEESTTSCHHHHHHHHH
T ss_pred EEECCcHHHHHH------HHHHHHHhhcCCCcEEEecCCCCHHHHHHHHH
Confidence 999543 33211 11111111111233556999999999988764
No 26
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=95.14 E-value=0.072 Score=49.32 Aligned_cols=107 Identities=12% Similarity=0.095 Sum_probs=56.8
Q ss_pred hCCCceEEEecCCCChHHHHhhhCCCCE---EEe-cCCccccceeecCCCccchHHHHHHHHHHHhcCCCCCcEEeeCC-
Q psy14926 16 RRQDLKLIVTSATMDADKFSNFFGNVPT---FHI-PGRTFPVDVFFAKNPVEDYVDSAVKQALQIHLIPNPDQKYPWPC- 90 (140)
Q Consensus 16 ~r~dLklVlMSATld~~~f~~yf~~~pv---i~i-~G~~~pV~~~y~~~~~~d~v~~~~~~v~~i~~~~~~GdILVFl~- 90 (140)
.+++.++++||||.....+...+.+..- +.. +....+++.++.+.... .....+..... ..|.++||..
T Consensus 748 l~~~~~vl~lSATp~p~~l~~~~~~~~~~~~i~~~~~~r~~i~~~~~~~~~~----~i~~~il~~l~--~g~qvlvf~~~ 821 (1151)
T 2eyq_A 748 MRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSM----VVREAILREIL--RGGQVYYLYND 821 (1151)
T ss_dssp HHTTSEEEEEESSCCCHHHHHHHTTTSEEEECCCCCCBCBCEEEEEEECCHH----HHHHHHHHHHT--TTCEEEEECCC
T ss_pred hcCCCCEEEEcCCCChhhHHHHHhcCCCceEEecCCCCccccEEEEecCCHH----HHHHHHHHHHh--cCCeEEEEECC
Confidence 5678899999999876666555443322 221 23345666655443211 12222332222 3588999943
Q ss_pred CceeeccccCCchhhHHHHHHHhhhhhhccCCCCCHHHHhhhccc
Q psy14926 91 FQKVRFGRYSGPKLRYLGLCIEKAQKELALFTTLPLATGRSNFAD 135 (140)
Q Consensus 91 ~~ei~~~~~~~~~~~~i~~~~~~~~~~lpLh~~lp~~eQ~~~f~~ 135 (140)
.++++.. .+.+.... ....+..+||.++..++++++..
T Consensus 822 v~~~~~l------~~~L~~~~-p~~~v~~lhg~~~~~eR~~il~~ 859 (1151)
T 2eyq_A 822 VENIQKA------AERLAELV-PEARIAIGHGQMRERELERVMND 859 (1151)
T ss_dssp SSCHHHH------HHHHHHHC-TTSCEEECCSSCCHHHHHHHHHH
T ss_pred HHHHHHH------HHHHHHhC-CCCeEEEEeCCCCHHHHHHHHHH
Confidence 3443210 11111110 01234559999999999887653
No 27
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=95.06 E-value=0.15 Score=49.21 Aligned_cols=25 Identities=28% Similarity=0.484 Sum_probs=22.6
Q ss_pred hCCCceEEEecCCC-ChHHHHhhhCC
Q psy14926 16 RRQDLKLIVTSATM-DADKFSNFFGN 40 (140)
Q Consensus 16 ~r~dLklVlMSATl-d~~~f~~yf~~ 40 (140)
..++.|+|.||||+ |.+.+++|++.
T Consensus 241 ~~~~~riI~LSATl~N~~dvA~wL~~ 266 (1724)
T 4f92_B 241 TQEDVRLIGLSATLPNYEDVATFLRV 266 (1724)
T ss_dssp HTCCCEEEEEECSCTTHHHHHHHTTC
T ss_pred CCCCCcEEEEecccCCHHHHHHHhCC
Confidence 67899999999999 89999999974
No 28
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=95.05 E-value=0.098 Score=50.45 Aligned_cols=35 Identities=9% Similarity=0.278 Sum_probs=26.4
Q ss_pred HHHHHHHHHH-hCCCceEEEecCCC-ChHHHHhhhCC
Q psy14926 6 FFLIYLQVIA-RRQDLKLIVTSATM-DADKFSNFFGN 40 (140)
Q Consensus 6 lL~llk~~~~-~r~dLklVlMSATl-d~~~f~~yf~~ 40 (140)
++..++.+.. ..++.|+|.||||+ |++.|++|++.
T Consensus 1069 il~rl~~i~~~~~~~~riI~lSATl~N~~dla~WL~~ 1105 (1724)
T 4f92_B 1069 ICSRMRYISSQIERPIRIVALSSSLSNAKDVAHWLGC 1105 (1724)
T ss_dssp HHHHHHHHHHTTSSCCEEEEEESCBTTHHHHHHHHTC
T ss_pred HHHHHHHHHhhcCCCceEEEEeCCCCCHHHHHHHhCC
Confidence 3344444443 45789999999999 89999999974
No 29
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=95.04 E-value=0.039 Score=49.25 Aligned_cols=109 Identities=14% Similarity=0.041 Sum_probs=57.9
Q ss_pred CCCceEEEecCCCChHHHH-hhhCCCCEEEe---cCCccccceeecCCCccchHHHHHHHHHHHhcCCCCCcEEeeCC-C
Q psy14926 17 RQDLKLIVTSATMDADKFS-NFFGNVPTFHI---PGRTFPVDVFFAKNPVEDYVDSAVKQALQIHLIPNPDQKYPWPC-F 91 (140)
Q Consensus 17 r~dLklVlMSATld~~~f~-~yf~~~pvi~i---~G~~~pV~~~y~~~~~~d~v~~~~~~v~~i~~~~~~GdILVFl~-~ 91 (140)
..+.++++||||.....+. .+|++..+..+ +....|++..+.+... ....+..+.+.. ...+.++||.+ -
T Consensus 514 ~~~~~vL~mSATp~p~tl~~~~~g~~~~s~i~~~p~~r~~i~~~~~~~~~---~~~l~~~i~~~l--~~g~qvlVf~~~i 588 (780)
T 1gm5_A 514 GKMVDTLVMSATPIPRSMALAFYGDLDVTVIDEMPPGRKEVQTMLVPMDR---VNEVYEFVRQEV--MRGGQAFIVYPLI 588 (780)
T ss_dssp SSCCCEEEEESSCCCHHHHHHHTCCSSCEEECCCCSSCCCCEECCCCSST---HHHHHHHHHHHT--TTSCCBCCBCCCC
T ss_pred CCCCCEEEEeCCCCHHHHHHHHhCCcceeeeeccCCCCcceEEEEeccch---HHHHHHHHHHHH--hcCCcEEEEecch
Confidence 3568899999998777665 45565443333 3334677777655432 223333333221 23567889943 3
Q ss_pred ceeeccccCCchhhHHHHHHHhhh-------hhhccCCCCCHHHHhhhccc
Q psy14926 92 QKVRFGRYSGPKLRYLGLCIEKAQ-------KELALFTTLPLATGRSNFAD 135 (140)
Q Consensus 92 ~ei~~~~~~~~~~~~i~~~~~~~~-------~~lpLh~~lp~~eQ~~~f~~ 135 (140)
.+.+.. .........+.+. .+..+||.++.+++++++..
T Consensus 589 e~se~l-----~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~ 634 (780)
T 1gm5_A 589 EESDKL-----NVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLE 634 (780)
T ss_dssp -------------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHH
T ss_pred hhhhhh-----hHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHH
Confidence 332110 0111222223332 24559999999998877654
No 30
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=94.94 E-value=0.24 Score=40.30 Aligned_cols=104 Identities=13% Similarity=0.082 Sum_probs=53.1
Q ss_pred CCCceEEEecCCCChH--HHH-hhhCCCCEEEecC---CccccceeecCCCccchHHHHHHHHHHHhcCCCCCcEEeeCC
Q psy14926 17 RQDLKLIVTSATMDAD--KFS-NFFGNVPTFHIPG---RTFPVDVFFAKNPVEDYVDSAVKQALQIHLIPNPDQKYPWPC 90 (140)
Q Consensus 17 r~dLklVlMSATld~~--~f~-~yf~~~pvi~i~G---~~~pV~~~y~~~~~~d~v~~~~~~v~~i~~~~~~GdILVFl~ 90 (140)
+++.++++||||+..+ .+. .|+.+...+.+.. ....++..|......+..... ...+.. . .+.+|||..
T Consensus 234 ~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l-~~~l~~---~-~~~~lVF~~ 308 (434)
T 2db3_A 234 RPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYEVNKYAKRSKL-IEILSE---Q-ADGTIVFVE 308 (434)
T ss_dssp CSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESSTTCCCTTEEEEEEECCGGGHHHHH-HHHHHH---C-CTTEEEECS
T ss_pred CCCceEEEEeccCCHHHHHHHHHhccCCEEEEeccccccccccceEEEEeCcHHHHHHH-HHHHHh---C-CCCEEEEEe
Confidence 6789999999999743 343 4455433344332 123344333322222222222 222222 2 234999964
Q ss_pred Cc-eeeccccCCchhhHHHHHH-HhhhhhhccCCCCCHHHHhhhccc
Q psy14926 91 FQ-KVRFGRYSGPKLRYLGLCI-EKAQKELALFTTLPLATGRSNFAD 135 (140)
Q Consensus 91 ~~-ei~~~~~~~~~~~~i~~~~-~~~~~~lpLh~~lp~~eQ~~~f~~ 135 (140)
.. +.+ .+.... ........+||.++..++++++..
T Consensus 309 t~~~a~----------~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~ 345 (434)
T 2db3_A 309 TKRGAD----------FLASFLSEKEFPTTSIHGDRLQSQREQALRD 345 (434)
T ss_dssp SHHHHH----------HHHHHHHHTTCCEEEESTTSCHHHHHHHHHH
T ss_pred CcHHHH----------HHHHHHHhCCCCEEEEeCCCCHHHHHHHHHH
Confidence 33 221 111111 122335669999999999887653
No 31
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=94.44 E-value=0.056 Score=46.78 Aligned_cols=45 Identities=16% Similarity=0.026 Sum_probs=27.7
Q ss_pred hHHHHHHHHHHHHhCCCceEEEecCCCChHHHHhhhC-CCCEEEecCC
Q psy14926 3 TADFFLIYLQVIARRQDLKLIVTSATMDADKFSNFFG-NVPTFHIPGR 49 (140)
Q Consensus 3 tDllL~llk~~~~~r~dLklVlMSATld~~~f~~yf~-~~pvi~i~G~ 49 (140)
+|..++.+++.+ .+++.++++||||++.. ..+++. +.+++.++.+
T Consensus 293 ~~~~~~~i~~~l-~~~~~q~il~SAT~~~~-~~~~~~~~~~~~~v~~~ 338 (618)
T 2whx_A 293 SVAARGYISTRV-EMGEAAAIFMTATPPGS-TDPFPQSNSPIEDIERE 338 (618)
T ss_dssp HHHHHHHHHHHH-HHTSCEEEEECSSCTTC-CCSSCCCSSCEEEEECC
T ss_pred HHHHHHHHHHHh-cccCccEEEEECCCchh-hhhhhccCCceeeeccc
Confidence 345566666554 34789999999999754 233333 3455555543
No 32
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=93.84 E-value=0.055 Score=47.56 Aligned_cols=46 Identities=13% Similarity=0.172 Sum_probs=29.7
Q ss_pred CCCcEEeeCCCceeeccccCCchhhHHHHHHHhhhhhhccCCCCCHH---HHhhhccc
Q psy14926 81 NPDQKYPWPCFQKVRFGRYSGPKLRYLGLCIEKAQKELALFTTLPLA---TGRSNFAD 135 (140)
Q Consensus 81 ~~GdILVFl~~~ei~~~~~~~~~~~~i~~~~~~~~~~lpLh~~lp~~---eQ~~~f~~ 135 (140)
.+|++++|.+.++++.. .+.++ .....+.++||.+|.+ +|.+.|.+
T Consensus 320 ~~g~iIf~~s~~~ie~l------a~~L~---~~g~~v~~lHG~L~~~~R~~~~~~F~~ 368 (677)
T 3rc3_A 320 RPGDCIVCFSKNDIYSV------SRQIE---IRGLESAVIYGSLPPGTKLAQAKKFND 368 (677)
T ss_dssp CTTEEEECSSHHHHHHH------HHHHH---HTTCCCEEECTTSCHHHHHHHHHHHHC
T ss_pred CCCCEEEEcCHHHHHHH------HHHHH---hcCCCeeeeeccCCHHHHHHHHHHHHc
Confidence 47888888876665321 11111 1234567899999999 67777764
No 33
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=93.73 E-value=0.094 Score=43.18 Aligned_cols=29 Identities=10% Similarity=-0.099 Sum_probs=21.7
Q ss_pred hHHHHHHHHHHHHhCCCceEEEecCCCChH
Q psy14926 3 TADFFLIYLQVIARRQDLKLIVTSATMDAD 32 (140)
Q Consensus 3 tDllL~llk~~~~~r~dLklVlMSATld~~ 32 (140)
.++.++++++... +++.++++||||+...
T Consensus 115 ~~~~~~~~~~~~~-~~~~~~l~~SAT~~~~ 143 (440)
T 1yks_A 115 SIAARGWAAHRAR-ANESATILMTATPPGT 143 (440)
T ss_dssp HHHHHHHHHHHHH-TTSCEEEEECSSCTTC
T ss_pred hHHHHHHHHHHhc-cCCceEEEEeCCCCch
Confidence 4566777777654 5789999999999644
No 34
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=93.47 E-value=0.18 Score=44.17 Aligned_cols=44 Identities=14% Similarity=0.064 Sum_probs=28.0
Q ss_pred hHHHHHHHHHHHHhCCCceEEEecCCCChHHHHhhh-CCCCEEEecC
Q psy14926 3 TADFFLIYLQVIARRQDLKLIVTSATMDADKFSNFF-GNVPTFHIPG 48 (140)
Q Consensus 3 tDllL~llk~~~~~r~dLklVlMSATld~~~f~~yf-~~~pvi~i~G 48 (140)
++..++++++... +++.++++||||+... ..++. ++.|+..+.+
T Consensus 348 ~~~~~~~l~~~~~-~~~~~vl~~SAT~~~~-i~~~~~~~~~i~~v~~ 392 (673)
T 2wv9_A 348 SIAARGYIATRVE-AGEAAAIFMTATPPGT-SDPFPDTNSPVHDVSS 392 (673)
T ss_dssp HHHHHHHHHHHHH-TTSCEEEEECSSCTTC-CCSSCCCSSCEEEEEC
T ss_pred HHHHHHHHHHhcc-ccCCcEEEEcCCCChh-hhhhcccCCceEEEee
Confidence 5677788877654 4789999999999744 22222 2355554443
No 35
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=93.47 E-value=0.52 Score=40.19 Aligned_cols=14 Identities=14% Similarity=0.057 Sum_probs=12.7
Q ss_pred CCCceEEEecCCCC
Q psy14926 17 RQDLKLIVTSATMD 30 (140)
Q Consensus 17 r~dLklVlMSATld 30 (140)
++..++++||||+.
T Consensus 171 ~~~~~il~LTATp~ 184 (696)
T 2ykg_A 171 GPLPQVIGLTASVG 184 (696)
T ss_dssp SCCCEEEEEESCCC
T ss_pred CCCCeEEEEeCccc
Confidence 57899999999997
No 36
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=93.31 E-value=0.15 Score=41.83 Aligned_cols=29 Identities=14% Similarity=-0.067 Sum_probs=21.3
Q ss_pred hHHHHHHHHHHHHhCCCceEEEecCCCChH
Q psy14926 3 TADFFLIYLQVIARRQDLKLIVTSATMDAD 32 (140)
Q Consensus 3 tDllL~llk~~~~~r~dLklVlMSATld~~ 32 (140)
++...+.+++.. .+++.++++||||+...
T Consensus 109 ~~~~~~~l~~~~-~~~~~~~l~~SAT~~~~ 137 (431)
T 2v6i_A 109 SVAARGYIETRV-SMGDAGAIFMTATPPGT 137 (431)
T ss_dssp HHHHHHHHHHHH-HTTSCEEEEEESSCTTC
T ss_pred HHHHHHHHHHHh-hCCCCcEEEEeCCCCcc
Confidence 355666666654 46789999999999753
No 37
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=92.91 E-value=0.1 Score=38.06 Aligned_cols=43 Identities=19% Similarity=0.294 Sum_probs=24.0
Q ss_pred HHHHH-hCCCceEEEecCCCChH--H-HHhhhCCCCEEEecCCcccc
Q psy14926 11 LQVIA-RRQDLKLIVTSATMDAD--K-FSNFFGNVPTFHIPGRTFPV 53 (140)
Q Consensus 11 k~~~~-~r~dLklVlMSATld~~--~-f~~yf~~~pvi~i~G~~~pV 53 (140)
..++. .+++.++++||||+..+ . ..+|+++...+.++++.+++
T Consensus 177 ~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~ 223 (224)
T 1qde_A 177 YQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTL 223 (224)
T ss_dssp HHHHHHSCTTCEEEEEESSCCHHHHHHHHHHCSSCEEEC--------
T ss_pred HHHHHhCCccCeEEEEEeecCHHHHHHHHHHCCCCEEEEecCCccCC
Confidence 33444 45788999999999753 3 45567666667777665543
No 38
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=92.52 E-value=0.062 Score=39.80 Aligned_cols=47 Identities=11% Similarity=0.159 Sum_probs=29.9
Q ss_pred CCCCCcEEeeCCCc-eeeccccCCchhhHHHHH-HHhhhhhhccCCCCCHHHHhhhccc
Q psy14926 79 IPNPDQKYPWPCFQ-KVRFGRYSGPKLRYLGLC-IEKAQKELALFTTLPLATGRSNFAD 135 (140)
Q Consensus 79 ~~~~GdILVFl~~~-ei~~~~~~~~~~~~i~~~-~~~~~~~lpLh~~lp~~eQ~~~f~~ 135 (140)
....+.+|||.+.. +++. +... ........++||.+|..+|++++..
T Consensus 28 ~~~~~~~lVF~~~~~~~~~----------l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~ 76 (212)
T 3eaq_A 28 VASPDRAMVFTRTKAETEE----------IAQGLLRLGHPAQALHGDLSQGERERVLGA 76 (212)
T ss_dssp HHCCSCEEEECSSHHHHHH----------HHHHHHHHTCCEEEECSSSCHHHHHHHHHH
T ss_pred hCCCCeEEEEeCCHHHHHH----------HHHHHHHcCCCEEEEECCCCHHHHHHHHHH
Confidence 34478999996554 3311 1111 1223446779999999999988764
No 39
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=90.54 E-value=2.1 Score=33.55 Aligned_cols=28 Identities=11% Similarity=0.097 Sum_probs=18.4
Q ss_pred HHHHHhCCCceEEEecCCCC--hHHHHhhh
Q psy14926 11 LQVIARRQDLKLIVTSATMD--ADKFSNFF 38 (140)
Q Consensus 11 k~~~~~r~dLklVlMSATld--~~~f~~yf 38 (140)
+.+....+..++++||||.. .+.+.+++
T Consensus 148 ~~~~~~~~~~~~l~lTaTp~~~~~~~~~l~ 177 (494)
T 1wp9_A 148 REYKRQAKNPLVIGLTASPGSTPEKIMEVI 177 (494)
T ss_dssp HHHHHHCSSCCEEEEESCSCSSHHHHHHHH
T ss_pred HHHHhcCCCCeEEEEecCCCCCcHHHHHHH
Confidence 33334567889999999996 34444443
No 40
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=89.45 E-value=0.96 Score=39.72 Aligned_cols=29 Identities=14% Similarity=-0.058 Sum_probs=18.6
Q ss_pred hHHHHHHHHHHHHhCCCceEEEecCCCCh
Q psy14926 3 TADFFLIYLQVIARRQDLKLIVTSATMDA 31 (140)
Q Consensus 3 tDllL~llk~~~~~r~dLklVlMSATld~ 31 (140)
++..+..+++.+...+.-.+++||||++.
T Consensus 334 ~~~~l~~Il~~l~~~~~~llil~SAT~~~ 362 (666)
T 3o8b_A 334 TILGIGTVLDQAETAGARLVVLATATPPG 362 (666)
T ss_dssp HHHHHHHHHHHTTTTTCSEEEEEESSCTT
T ss_pred HHHHHHHHHHhhhhcCCceEEEECCCCCc
Confidence 34445555655554455557889999975
No 41
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=88.32 E-value=0.37 Score=41.18 Aligned_cols=21 Identities=10% Similarity=0.109 Sum_probs=15.9
Q ss_pred hhhhccCCC--------CCHHHHhhhccc
Q psy14926 115 QKELALFTT--------LPLATGRSNFAD 135 (140)
Q Consensus 115 ~~~lpLh~~--------lp~~eQ~~~f~~ 135 (140)
.....+||. ++..+|++++..
T Consensus 431 ~~~~~lhg~~~~~~~~~~~~~eR~~~~~~ 459 (699)
T 4gl2_A 431 VKAHHLIGAGHSSEFKPMTQNEQKEVISK 459 (699)
T ss_dssp --CEECCCSCCCTTCCCCCHHHHHHHHHH
T ss_pred cceEEEECCCCccCCCCCCHHHHHHHHHH
Confidence 345669999 999999988754
No 42
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=87.87 E-value=2.6 Score=34.23 Aligned_cols=18 Identities=11% Similarity=0.084 Sum_probs=0.0
Q ss_pred hccCCCCCHHHHhhhccc
Q psy14926 118 LALFTTLPLATGRSNFAD 135 (140)
Q Consensus 118 lpLh~~lp~~eQ~~~f~~ 135 (140)
..+||.+|..++++++..
T Consensus 429 ~~~~~~~~~~~R~~~~~~ 446 (555)
T 3tbk_A 429 TNRATGMTLPAQKCVLEA 446 (555)
T ss_dssp ------------------
T ss_pred cccccccCHHHHHHHHHH
Confidence 447889999999988753
No 43
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=87.74 E-value=0.95 Score=35.53 Aligned_cols=67 Identities=10% Similarity=0.145 Sum_probs=38.2
Q ss_pred eeecCCCccchHHHHHHHHHHHhcCCCCCcEEeeCCCc-eeeccccCCchhhHHHHHH-HhhhhhhccCCCCCHHHHhhh
Q psy14926 55 VFFAKNPVEDYVDSAVKQALQIHLIPNPDQKYPWPCFQ-KVRFGRYSGPKLRYLGLCI-EKAQKELALFTTLPLATGRSN 132 (140)
Q Consensus 55 ~~y~~~~~~d~v~~~~~~v~~i~~~~~~GdILVFl~~~-ei~~~~~~~~~~~~i~~~~-~~~~~~lpLh~~lp~~eQ~~~ 132 (140)
.+|...+..+.+. ++..+++.+ ..+.+|||.++. +++. +.... .......++||.+|..+|+++
T Consensus 5 ~~~i~~~~~~K~~-~L~~ll~~~---~~~~~LVF~~t~~~~~~----------l~~~L~~~g~~~~~lhg~l~~~~r~~~ 70 (300)
T 3i32_A 5 EEAVPAPVRGRLE-VLSDLLYVA---SPDRAMVFTRTKAETEE----------IAQGLLRLGHPAQALHGDMSQGERERV 70 (300)
T ss_dssp EEEEECCSSSHHH-HHHHHHHHH---CCSSEEEECSSHHHHHH----------HHHHHHTTTCCEEEECSCCCTHHHHHH
T ss_pred EEEEECCHHHHHH-HHHHHHHhc---CCCCEEEEECCHHHHHH----------HHHHHHhCCCCEEEEeCCCCHHHHHHH
Confidence 3444433444443 333444443 378999997554 3311 11111 223346779999999999998
Q ss_pred ccc
Q psy14926 133 FAD 135 (140)
Q Consensus 133 f~~ 135 (140)
+..
T Consensus 71 ~~~ 73 (300)
T 3i32_A 71 MGA 73 (300)
T ss_dssp HHH
T ss_pred HHH
Confidence 864
No 44
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=86.48 E-value=0.85 Score=33.41 Aligned_cols=39 Identities=15% Similarity=0.098 Sum_probs=24.4
Q ss_pred HHHHH-hCCCceEEEecCCCCh--HHHH-hhhCCCCEEEecCC
Q psy14926 11 LQVIA-RRQDLKLIVTSATMDA--DKFS-NFFGNVPTFHIPGR 49 (140)
Q Consensus 11 k~~~~-~r~dLklVlMSATld~--~~f~-~yf~~~pvi~i~G~ 49 (140)
..++. ..++.++++||||+.. ..+. .|+.++..+.++++
T Consensus 193 ~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~i~~~~~ 235 (236)
T 2pl3_A 193 NAVIENLPKKRQTLLFSATQTKSVKDLARLSLKNPEYVWVHEK 235 (236)
T ss_dssp HHHHHTSCTTSEEEEEESSCCHHHHHHHHHSCSSCEEEECCC-
T ss_pred HHHHHhCCCCCeEEEEEeeCCHHHHHHHHHhCCCCEEEEeCCC
Confidence 34444 3467889999999975 3344 45565556666554
No 45
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=86.16 E-value=1.2 Score=31.67 Aligned_cols=36 Identities=11% Similarity=0.237 Sum_probs=22.1
Q ss_pred HHHHHH-hCCCceEEEecCCCCh--HHHHh-hhCCCCEEE
Q psy14926 10 YLQVIA-RRQDLKLIVTSATMDA--DKFSN-FFGNVPTFH 45 (140)
Q Consensus 10 lk~~~~-~r~dLklVlMSATld~--~~f~~-yf~~~pvi~ 45 (140)
+..++. .+++.++++||||+.. ..+.+ |++++.++.
T Consensus 165 ~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~ 204 (207)
T 2gxq_A 165 VEALLSATPPSRQTLLFSATLPSWAKRLAERYMKNPVLIN 204 (207)
T ss_dssp HHHHHHTSCTTSEEEEECSSCCHHHHHHHHHHCSSCEEEE
T ss_pred HHHHHHhCCccCeEEEEEEecCHHHHHHHHHHcCCCeEEE
Confidence 334444 3468899999999984 44544 555433343
No 46
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=85.73 E-value=3.2 Score=33.78 Aligned_cols=18 Identities=11% Similarity=0.097 Sum_probs=0.0
Q ss_pred hccCCCCCHHHHhhhccc
Q psy14926 118 LALFTTLPLATGRSNFAD 135 (140)
Q Consensus 118 lpLh~~lp~~eQ~~~f~~ 135 (140)
..+||.++.+++++++..
T Consensus 430 ~~~~~~~~~~~R~~~~~~ 447 (556)
T 4a2p_A 430 RDQTTGMTLPSQKGVLDA 447 (556)
T ss_dssp ------------------
T ss_pred cccccccCHHHHHHHHHH
Confidence 347889999999988753
No 47
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=84.86 E-value=1.3 Score=32.49 Aligned_cols=33 Identities=21% Similarity=0.327 Sum_probs=21.9
Q ss_pred CCCceEEEecCCCC--hHHHHh-hhCCCCEEEecCC
Q psy14926 17 RQDLKLIVTSATMD--ADKFSN-FFGNVPTFHIPGR 49 (140)
Q Consensus 17 r~dLklVlMSATld--~~~f~~-yf~~~pvi~i~G~ 49 (140)
.++.++++||||+. ...|.+ |++++-.+.+.++
T Consensus 208 ~~~~~~~~~SAT~~~~v~~~~~~~l~~p~~i~~~~~ 243 (245)
T 3dkp_A 208 SHKVRRAMFSATFAYDVEQWCKLNLDNVISVSIGAR 243 (245)
T ss_dssp CTTCEEEEEESSCCHHHHHHHHHHSSSCEEEEECC-
T ss_pred CCCcEEEEEeccCCHHHHHHHHHhCCCCEEEEeCCC
Confidence 46899999999996 344555 4554445666554
No 48
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=83.43 E-value=1.4 Score=32.93 Aligned_cols=36 Identities=22% Similarity=0.213 Sum_probs=22.2
Q ss_pred HHHHH-hCCCceEEEecCCCChH--HH-HhhhCCCCEEEe
Q psy14926 11 LQVIA-RRQDLKLIVTSATMDAD--KF-SNFFGNVPTFHI 46 (140)
Q Consensus 11 k~~~~-~r~dLklVlMSATld~~--~f-~~yf~~~pvi~i 46 (140)
+.++. .+++.++++||||++.+ .+ ..|++++-.+.+
T Consensus 208 ~~i~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~p~~i~v 247 (249)
T 3ber_A 208 DKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAV 247 (249)
T ss_dssp HHHHHSSCSSSEEEEEESSCCHHHHHHHHHHCSSCEEEEC
T ss_pred HHHHHhCCCCCeEEEEeccCCHHHHHHHHHHCCCCEEEEe
Confidence 34444 45689999999999743 33 445554433443
No 49
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=83.28 E-value=1.3 Score=32.48 Aligned_cols=36 Identities=8% Similarity=0.092 Sum_probs=22.4
Q ss_pred HHHHHH-hCCCceEEEecCCCChH---HHHhhhCCCCEEE
Q psy14926 10 YLQVIA-RRQDLKLIVTSATMDAD---KFSNFFGNVPTFH 45 (140)
Q Consensus 10 lk~~~~-~r~dLklVlMSATld~~---~f~~yf~~~pvi~ 45 (140)
++.++. .+++.++++||||++.+ .+.+||+++..+.
T Consensus 188 ~~~i~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~p~~i~ 227 (230)
T 2oxc_A 188 INWIYSSLPASKQMLAVSATYPEFLANALTKYMRDPTFVR 227 (230)
T ss_dssp HHHHHHHSCSSCEEEEEESCCCHHHHHHHTTTCSSCEEEC
T ss_pred HHHHHHhCCCCCeEEEEEeccCHHHHHHHHHHcCCCeEEE
Confidence 344444 34578899999999754 2455666544443
No 50
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=80.37 E-value=2.3 Score=30.73 Aligned_cols=32 Identities=28% Similarity=0.395 Sum_probs=20.3
Q ss_pred HHHHHH-hCCCceEEEecCCCChH--H-HHhhhCCC
Q psy14926 10 YLQVIA-RRQDLKLIVTSATMDAD--K-FSNFFGNV 41 (140)
Q Consensus 10 lk~~~~-~r~dLklVlMSATld~~--~-f~~yf~~~ 41 (140)
+..++. ..++.++++||||+..+ . ..+|++++
T Consensus 171 l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p 206 (219)
T 1q0u_A 171 VDQIAARMPKDLQMLVFSATIPEKLKPFLKKYMENP 206 (219)
T ss_dssp HHHHHHTSCTTCEEEEEESCCCGGGHHHHHHHCSSC
T ss_pred HHHHHHhCCcccEEEEEecCCCHHHHHHHHHHcCCC
Confidence 344444 34688999999999643 3 44556543
No 51
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=78.76 E-value=2.7 Score=30.91 Aligned_cols=37 Identities=19% Similarity=0.288 Sum_probs=23.1
Q ss_pred HHHHH-hCCCceEEEecCCCCh--HHHHh-hhCCCCEEEec
Q psy14926 11 LQVIA-RRQDLKLIVTSATMDA--DKFSN-FFGNVPTFHIP 47 (140)
Q Consensus 11 k~~~~-~r~dLklVlMSATld~--~~f~~-yf~~~pvi~i~ 47 (140)
..++. .+++.++++||||+.. ..+.+ |+++.-.|.+.
T Consensus 198 ~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~l~~~~~i~~~ 238 (242)
T 3fe2_A 198 RKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIG 238 (242)
T ss_dssp HHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEEEEC
T ss_pred HHHHHhCCccceEEEEEeecCHHHHHHHHHHCCCCEEEEec
Confidence 33444 4578999999999974 45555 44443345554
No 52
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=78.51 E-value=2.6 Score=30.92 Aligned_cols=29 Identities=17% Similarity=0.293 Sum_probs=19.0
Q ss_pred hCCCceEEEecCCCCh--HHHH-hhhCCCCEE
Q psy14926 16 RRQDLKLIVTSATMDA--DKFS-NFFGNVPTF 44 (140)
Q Consensus 16 ~r~dLklVlMSATld~--~~f~-~yf~~~pvi 44 (140)
..++.++++||||+.. ..+. +|++++..|
T Consensus 201 ~~~~~~~i~~SAT~~~~~~~~~~~~l~~p~~i 232 (237)
T 3bor_A 201 LNTSIQVVLLSATMPTDVLEVTKKFMRDPIRI 232 (237)
T ss_dssp SCTTCEEEEECSSCCHHHHHHHHHHCSSCEEE
T ss_pred CCCCCeEEEEEEecCHHHHHHHHHHCCCCEEE
Confidence 4578999999999974 3444 455543333
No 53
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=77.70 E-value=3.2 Score=30.04 Aligned_cols=33 Identities=21% Similarity=0.260 Sum_probs=20.9
Q ss_pred HHHHH-hCCCceEEEecCCCCh--HHHHhhhCCCCE
Q psy14926 11 LQVIA-RRQDLKLIVTSATMDA--DKFSNFFGNVPT 43 (140)
Q Consensus 11 k~~~~-~r~dLklVlMSATld~--~~f~~yf~~~pv 43 (140)
+.++. .+++.++++||||++. ..+.+.|-+.|+
T Consensus 189 ~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~ 224 (228)
T 3iuy_A 189 RKILLDVRPDRQTVMTSATWPDTVRQLALSYLKDPM 224 (228)
T ss_dssp HHHHHHSCSSCEEEEEESCCCHHHHHHHHTTCSSCE
T ss_pred HHHHHhCCcCCeEEEEEeeCCHHHHHHHHHHCCCCE
Confidence 33444 5678999999999974 444443333444
No 54
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=76.23 E-value=13 Score=24.15 Aligned_cols=33 Identities=3% Similarity=0.076 Sum_probs=26.1
Q ss_pred HHHHHHHHHhCCCceEEEecCCCChHHHHhhhC
Q psy14926 7 FLIYLQVIARRQDLKLIVTSATMDADKFSNFFG 39 (140)
Q Consensus 7 L~llk~~~~~r~dLklVlMSATld~~~f~~yf~ 39 (140)
+.+++.+....+++++|++|+..+.+...+.+.
T Consensus 83 ~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~ 115 (146)
T 4dad_A 83 LAAIEKLSRLHPGLTCLLVTTDASSQTLLDAMR 115 (146)
T ss_dssp HHHHHHHHHHCTTCEEEEEESCCCHHHHHHHHT
T ss_pred HHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHH
Confidence 456777766778999999999988887777664
No 55
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=76.19 E-value=9.9 Score=24.59 Aligned_cols=61 Identities=16% Similarity=0.138 Sum_probs=37.1
Q ss_pred HHHHHHHHHhCCCceEEEecCCCChHHHHhhhCCCCEEEecCCccccceeecCCCccchHHHHHHHHHHHhc
Q psy14926 7 FLIYLQVIARRQDLKLIVTSATMDADKFSNFFGNVPTFHIPGRTFPVDVFFAKNPVEDYVDSAVKQALQIHL 78 (140)
Q Consensus 7 L~llk~~~~~r~dLklVlMSATld~~~f~~yf~~~pvi~i~G~~~pV~~~y~~~~~~d~v~~~~~~v~~i~~ 78 (140)
+.+++.+....+++++|++|+..+.+...+.+.. | +.-+..++...+.+..++.++..-..
T Consensus 68 ~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~-------g----a~~~l~KP~~~~~l~~~i~~~~~~~~ 128 (136)
T 3kto_A 68 IELLETLVKRGFHLPTIVMASSSDIPTAVRAMRA-------S----AADFIEKPFIEHVLVHDVQQIINGAK 128 (136)
T ss_dssp HHHHHHHHHTTCCCCEEEEESSCCHHHHHHHHHT-------T----CSEEEESSBCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHc-------C----hHHheeCCCCHHHHHHHHHHHHhccC
Confidence 5567777677789999999999887766665531 1 11112222234556666666665543
No 56
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=75.20 E-value=2 Score=36.08 Aligned_cols=11 Identities=18% Similarity=0.190 Sum_probs=9.6
Q ss_pred eEEEecCCCCh
Q psy14926 21 KLIVTSATMDA 31 (140)
Q Consensus 21 klVlMSATld~ 31 (140)
.+|+||||+..
T Consensus 321 ~~IltSATL~p 331 (540)
T 2vl7_A 321 FKVLMSGTLPE 331 (540)
T ss_dssp CEEEEESSCCT
T ss_pred CeEEEcccCCC
Confidence 46999999987
No 57
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=73.93 E-value=20 Score=32.45 Aligned_cols=64 Identities=16% Similarity=0.176 Sum_probs=40.8
Q ss_pred eEEEecCCCC--hHHHHhhhCCCCEEEecCCccccce------eecCCCccchHHHHHHHHHHHhcCCCCCcEEeeCC
Q psy14926 21 KLIVTSATMD--ADKFSNFFGNVPTFHIPGRTFPVDV------FFAKNPVEDYVDSAVKQALQIHLIPNPDQKYPWPC 90 (140)
Q Consensus 21 klVlMSATld--~~~f~~yf~~~pvi~i~G~~~pV~~------~y~~~~~~d~v~~~~~~v~~i~~~~~~GdILVFl~ 90 (140)
|+.-||+|+. ++.|.+.|+ ..++.||. ..|+.- .|.. ..+...+.+..+...|.. ..-||||-.
T Consensus 378 kl~GmTGTa~te~~ef~~iY~-l~vv~IPt-n~p~~R~d~~d~v~~~--~~~K~~al~~~i~~~~~~--gqpvLVft~ 449 (853)
T 2fsf_A 378 KLAGMTGTADTEAFEFSSIYK-LDTVVVPT-NRPMIRKDLPDLVYMT--EAEKIQAIIEDIKERTAK--GQPVLVGTI 449 (853)
T ss_dssp EEEEEECTTCCCHHHHHHHHC-CEEEECCC-SSCCCCEECCCEEESS--HHHHHHHHHHHHHHHHTT--TCCEEEEES
T ss_pred hhhcCCCCchhHHHHHHHHhC-CcEEEcCC-CCCceeecCCcEEEeC--HHHHHHHHHHHHHHHhcC--CCCEEEEEC
Confidence 7899999995 567899886 88999994 355542 2322 234444555555455432 235999953
No 58
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=72.01 E-value=6.5 Score=27.12 Aligned_cols=55 Identities=13% Similarity=0.102 Sum_probs=30.9
Q ss_pred HHHHHHHHHhcCCCCCcEEeeCCC-ceeeccccCCchhhHHHHHH-HhhhhhhccCCCCCHHHHhhhccc
Q psy14926 68 SAVKQALQIHLIPNPDQKYPWPCF-QKVRFGRYSGPKLRYLGLCI-EKAQKELALFTTLPLATGRSNFAD 135 (140)
Q Consensus 68 ~~~~~v~~i~~~~~~GdILVFl~~-~ei~~~~~~~~~~~~i~~~~-~~~~~~lpLh~~lp~~eQ~~~f~~ 135 (140)
..+..+++. ...+.+|||... .+.+. +.... ........+||.++..++++++..
T Consensus 19 ~~l~~ll~~---~~~~~~lVF~~~~~~~~~----------l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~ 75 (165)
T 1fuk_A 19 ECLTDLYDS---ISVTQAVIFCNTRRKVEE----------LTTKLRNDKFTVSAIYSDLPQQERDTIMKE 75 (165)
T ss_dssp HHHHHHHHH---TTCSCEEEEESSHHHHHH----------HHHHHHHTTCCEEEECTTSCHHHHHHHHHH
T ss_pred HHHHHHHHh---CCCCCEEEEECCHHHHHH----------HHHHHHHcCCCEEEEECCCCHHHHHHHHHH
Confidence 344444443 246789999543 33211 11111 122335679999999999887653
No 59
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=71.41 E-value=15 Score=24.10 Aligned_cols=33 Identities=9% Similarity=0.009 Sum_probs=23.7
Q ss_pred HHHHHHHHHhCCCceEEEecCCCChHHHHhhhC
Q psy14926 7 FLIYLQVIARRQDLKLIVTSATMDADKFSNFFG 39 (140)
Q Consensus 7 L~llk~~~~~r~dLklVlMSATld~~~f~~yf~ 39 (140)
+.+++.+....++.++|++|+..+.+...+.+.
T Consensus 77 ~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~ 109 (152)
T 3eul_A 77 AQVAAAVRSYELPTRVLLISAHDEPAIVYQALQ 109 (152)
T ss_dssp HHHHHHHHHTTCSCEEEEEESCCCHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCeEEEEEccCCHHHHHHHHH
Confidence 455666666678888888888888777666653
No 60
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=71.24 E-value=13 Score=24.12 Aligned_cols=32 Identities=13% Similarity=0.254 Sum_probs=20.2
Q ss_pred HHHHHHHHH--hCCCceEEEecCCCChHHHHhhh
Q psy14926 7 FLIYLQVIA--RRQDLKLIVTSATMDADKFSNFF 38 (140)
Q Consensus 7 L~llk~~~~--~r~dLklVlMSATld~~~f~~yf 38 (140)
+.+++.+.. ..++.++|++|+..+.+...+.+
T Consensus 67 ~~~~~~lr~~~~~~~~pii~~s~~~~~~~~~~~~ 100 (144)
T 3kht_A 67 FEVMSAVRKPGANQHTPIVILTDNVSDDRAKQCM 100 (144)
T ss_dssp HHHHHHHHSSSTTTTCCEEEEETTCCHHHHHHHH
T ss_pred HHHHHHHHhcccccCCCEEEEeCCCCHHHHHHHH
Confidence 344555544 45677788888777766666555
No 61
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=70.16 E-value=14 Score=23.66 Aligned_cols=32 Identities=19% Similarity=0.119 Sum_probs=20.8
Q ss_pred HHHHHHHHHhCCCceEEEecCCCChHHHHhhh
Q psy14926 7 FLIYLQVIARRQDLKLIVTSATMDADKFSNFF 38 (140)
Q Consensus 7 L~llk~~~~~r~dLklVlMSATld~~~f~~yf 38 (140)
+.+++.+....++.++|++|+..+.+...+.+
T Consensus 67 ~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~ 98 (137)
T 3hdg_A 67 LEMLDRIKAGGAKPYVIVISAFSEMKYFIKAI 98 (137)
T ss_dssp HHHHHHHHHTTCCCEEEECCCCCCHHHHHHHH
T ss_pred HHHHHHHHhcCCCCcEEEEecCcChHHHHHHH
Confidence 34555555566777788887777766655554
No 62
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=70.15 E-value=11 Score=30.56 Aligned_cols=19 Identities=11% Similarity=-0.141 Sum_probs=14.8
Q ss_pred hhhccCCCCCHHHHhhhcc
Q psy14926 116 KELALFTTLPLATGRSNFA 134 (140)
Q Consensus 116 ~~lpLh~~lp~~eQ~~~f~ 134 (140)
.+..+||.++.+++++++.
T Consensus 373 ~v~~~~g~~~~~~r~~i~~ 391 (510)
T 2oca_A 373 KVYYVSGEVDTETRNIMKT 391 (510)
T ss_dssp SEEEESSSTTHHHHHHHHH
T ss_pred CeEEEECCCCHHHHHHHHH
Confidence 3456999999998887654
No 63
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=70.11 E-value=11 Score=24.29 Aligned_cols=33 Identities=6% Similarity=0.098 Sum_probs=24.7
Q ss_pred HHHHHHHHH--hCCCceEEEecCCCChHHHHhhhC
Q psy14926 7 FLIYLQVIA--RRQDLKLIVTSATMDADKFSNFFG 39 (140)
Q Consensus 7 L~llk~~~~--~r~dLklVlMSATld~~~f~~yf~ 39 (140)
+.+++.+.. ..++.++|++|+..+.+...+.+.
T Consensus 67 ~~~~~~l~~~~~~~~~~ii~ls~~~~~~~~~~~~~ 101 (140)
T 3lua_A 67 LEVLSAIRNNSRTANTPVIIATKSDNPGYRHAALK 101 (140)
T ss_dssp HHHHHHHHHSGGGTTCCEEEEESCCCHHHHHHHHH
T ss_pred HHHHHHHHhCcccCCCCEEEEeCCCCHHHHHHHHH
Confidence 456666666 678899999999888777766653
No 64
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=69.64 E-value=18 Score=31.53 Aligned_cols=18 Identities=11% Similarity=0.097 Sum_probs=0.0
Q ss_pred hccCCCCCHHHHhhhccc
Q psy14926 118 LALFTTLPLATGRSNFAD 135 (140)
Q Consensus 118 lpLh~~lp~~eQ~~~f~~ 135 (140)
..+||.++..+++.++..
T Consensus 671 ~~~hg~~~~~eR~~~l~~ 688 (797)
T 4a2q_A 671 RDQTTGMTLPSQKGVLDA 688 (797)
T ss_dssp ------------------
T ss_pred cccCCCCCHHHHHHHHHH
Confidence 447999999999988753
No 65
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=69.53 E-value=14 Score=24.33 Aligned_cols=33 Identities=12% Similarity=0.162 Sum_probs=23.8
Q ss_pred HHHHHHHHHhCCCceEEEecCCCChHHHHhhhC
Q psy14926 7 FLIYLQVIARRQDLKLIVTSATMDADKFSNFFG 39 (140)
Q Consensus 7 L~llk~~~~~r~dLklVlMSATld~~~f~~yf~ 39 (140)
+.+++.+....++.++|++|+..+.+...+.+.
T Consensus 82 ~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~ 114 (150)
T 4e7p_A 82 LEVLEWIRSEKLETKVVVVTTFKRAGYFERAVK 114 (150)
T ss_dssp HHHHHHHHHTTCSCEEEEEESCCCHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHH
Confidence 455666666678888888888888777666653
No 66
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=69.49 E-value=18 Score=23.34 Aligned_cols=33 Identities=12% Similarity=0.079 Sum_probs=22.0
Q ss_pred HHHHHHHHHhCCCceEEEecCCCChHHHHhhhC
Q psy14926 7 FLIYLQVIARRQDLKLIVTSATMDADKFSNFFG 39 (140)
Q Consensus 7 L~llk~~~~~r~dLklVlMSATld~~~f~~yf~ 39 (140)
+.+++.+....++.++|++|+..+.+...+.+.
T Consensus 65 ~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~ 97 (143)
T 3jte_A 65 MDILREIKKITPHMAVIILTGHGDLDNAILAMK 97 (143)
T ss_dssp HHHHHHHHHHCTTCEEEEEECTTCHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCeEEEEECCCCHHHHHHHHH
Confidence 345566555667888888888777666655553
No 67
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=69.22 E-value=6.7 Score=29.36 Aligned_cols=28 Identities=18% Similarity=0.172 Sum_probs=18.6
Q ss_pred HHHHH-hCCCceEEEecCCCCh--HHHHhhh
Q psy14926 11 LQVIA-RRQDLKLIVTSATMDA--DKFSNFF 38 (140)
Q Consensus 11 k~~~~-~r~dLklVlMSATld~--~~f~~yf 38 (140)
+.++. ..++.++++||||+.. ..|.+.+
T Consensus 223 ~~i~~~~~~~~q~l~~SAT~~~~v~~~~~~~ 253 (262)
T 3ly5_A 223 KQIIKLLPTRRQTMLFSATQTRKVEDLARIS 253 (262)
T ss_dssp HHHHHHSCSSSEEEEECSSCCHHHHHHHHHH
T ss_pred HHHHHhCCCCCeEEEEEecCCHHHHHHHHHH
Confidence 44444 4467899999999974 4455533
No 68
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=67.50 E-value=18 Score=29.02 Aligned_cols=42 Identities=5% Similarity=-0.113 Sum_probs=25.3
Q ss_pred CCCCcEEeeCCCceeeccccCCchhhHHHHHHHhhhhhhccCCCCCHHHHhhhcc
Q psy14926 80 PNPDQKYPWPCFQKVRFGRYSGPKLRYLGLCIEKAQKELALFTTLPLATGRSNFA 134 (140)
Q Consensus 80 ~~~GdILVFl~~~ei~~~~~~~~~~~~i~~~~~~~~~~lpLh~~lp~~eQ~~~f~ 134 (140)
...+.+|||....+. .......+ ....+||.++..++++++.
T Consensus 347 ~~~~k~lvF~~~~~~------------~~~l~~~l-~~~~~~g~~~~~~R~~~~~ 388 (472)
T 2fwr_A 347 HRKDKIIIFTRHNEL------------VYRISKVF-LIPAITHRTSREEREEILE 388 (472)
T ss_dssp TSSSCBCCBCSCHHH------------HHHHHHHT-TCCBCCSSSCSHHHHTHHH
T ss_pred CCCCcEEEEECCHHH------------HHHHHHHh-CcceeeCCCCHHHHHHHHH
Confidence 346789999644321 11121222 2345999999999988765
No 69
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=66.88 E-value=7.6 Score=27.71 Aligned_cols=27 Identities=11% Similarity=0.224 Sum_probs=17.8
Q ss_pred HHHHHH-hCCCceEEEecCCCCh--HHHHh
Q psy14926 10 YLQVIA-RRQDLKLIVTSATMDA--DKFSN 36 (140)
Q Consensus 10 lk~~~~-~r~dLklVlMSATld~--~~f~~ 36 (140)
+++++. ..++.++++||||+.. ..+.+
T Consensus 180 ~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~ 209 (220)
T 1t6n_A 180 VQEIFRMTPHEKQVMMFSATLSKEIRPVCR 209 (220)
T ss_dssp HHHHHHTSCSSSEEEEEESCCCTTTHHHHH
T ss_pred HHHHHHhCCCcCeEEEEEeecCHHHHHHHH
Confidence 344444 3458999999999964 44444
No 70
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=66.14 E-value=25 Score=23.06 Aligned_cols=33 Identities=6% Similarity=0.036 Sum_probs=22.7
Q ss_pred HHHHHHHHHhCCCceEEEecCCCChHHHHhhhC
Q psy14926 7 FLIYLQVIARRQDLKLIVTSATMDADKFSNFFG 39 (140)
Q Consensus 7 L~llk~~~~~r~dLklVlMSATld~~~f~~yf~ 39 (140)
+.+++.+....++.++|++|+..+.+...+.+.
T Consensus 74 ~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~ 106 (153)
T 3hv2_A 74 PTLLARIHQQYPSTTRILLTGDPDLKLIAKAIN 106 (153)
T ss_dssp HHHHHHHHHHCTTSEEEEECCCCCHHHHHHHHH
T ss_pred HHHHHHHHhHCCCCeEEEEECCCCHHHHHHHHh
Confidence 345566655667888888888877776666553
No 71
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=65.12 E-value=16 Score=22.71 Aligned_cols=31 Identities=16% Similarity=0.085 Sum_probs=19.0
Q ss_pred HHHHHHHHhCCCceEEEecCCCChHHHHhhh
Q psy14926 8 LIYLQVIARRQDLKLIVTSATMDADKFSNFF 38 (140)
Q Consensus 8 ~llk~~~~~r~dLklVlMSATld~~~f~~yf 38 (140)
.+++++.+..++.++|++|+..+.+...+.+
T Consensus 64 ~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~ 94 (120)
T 1tmy_A 64 DAIKEIMKIDPNAKIIVCSAMGQQAMVIEAI 94 (120)
T ss_dssp HHHHHHHHHCTTCCEEEEECTTCHHHHHHHH
T ss_pred HHHHHHHhhCCCCeEEEEeCCCCHHHHHHHH
Confidence 4455555555677777777776665555444
No 72
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=64.49 E-value=24 Score=22.51 Aligned_cols=31 Identities=10% Similarity=0.240 Sum_probs=20.9
Q ss_pred HHHHHHHHhCCCceEEEecCCCChHHHHhhh
Q psy14926 8 LIYLQVIARRQDLKLIVTSATMDADKFSNFF 38 (140)
Q Consensus 8 ~llk~~~~~r~dLklVlMSATld~~~f~~yf 38 (140)
.+++.+....++.++|++|+.-+.+...+.+
T Consensus 66 ~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~ 96 (133)
T 3b2n_A 66 EVLAEIRKKHLNIKVIIVTTFKRPGYFEKAV 96 (133)
T ss_dssp HHHHHHHHTTCSCEEEEEESCCCHHHHHHHH
T ss_pred HHHHHHHHHCCCCcEEEEecCCCHHHHHHHH
Confidence 4556655556788888888877766655554
No 73
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=64.48 E-value=13 Score=24.73 Aligned_cols=33 Identities=9% Similarity=0.098 Sum_probs=22.1
Q ss_pred HHHHHHHHHhCCCceEEEecCCCChHHHHhhhC
Q psy14926 7 FLIYLQVIARRQDLKLIVTSATMDADKFSNFFG 39 (140)
Q Consensus 7 L~llk~~~~~r~dLklVlMSATld~~~f~~yf~ 39 (140)
+.+++++....++.++|++|+..+.+...+.+.
T Consensus 99 ~~~~~~lr~~~~~~~ii~ls~~~~~~~~~~~~~ 131 (157)
T 3hzh_A 99 ITCLSNIMEFDKNARVIMISALGKEQLVKDCLI 131 (157)
T ss_dssp HHHHHHHHHHCTTCCEEEEESCCCHHHHHHHHH
T ss_pred HHHHHHHHhhCCCCcEEEEeccCcHHHHHHHHH
Confidence 345566655667788888888777766666553
No 74
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=63.60 E-value=21 Score=22.44 Aligned_cols=31 Identities=10% Similarity=0.013 Sum_probs=18.2
Q ss_pred HHHHHHHHhCCCceEEEecCCCChHHHHhhh
Q psy14926 8 LIYLQVIARRQDLKLIVTSATMDADKFSNFF 38 (140)
Q Consensus 8 ~llk~~~~~r~dLklVlMSATld~~~f~~yf 38 (140)
.+++.+....++.++|++|+..+.+...+.+
T Consensus 64 ~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~ 94 (126)
T 1dbw_A 64 ELLRNLGDLKINIPSIVITGHGDVPMAVEAM 94 (126)
T ss_dssp HHHHHHHHTTCCCCEEEEECTTCHHHHHHHH
T ss_pred HHHHHHHhcCCCCCEEEEECCCCHHHHHHHH
Confidence 3455554455677777777766655544444
No 75
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=63.50 E-value=14 Score=29.13 Aligned_cols=12 Identities=42% Similarity=0.354 Sum_probs=11.0
Q ss_pred CCceEEEecCCC
Q psy14926 18 QDLKLIVTSATM 29 (140)
Q Consensus 18 ~dLklVlMSATl 29 (140)
++.++++||||+
T Consensus 192 ~~~~~i~~SAT~ 203 (414)
T 3oiy_A 192 KPGILVVSSATA 203 (414)
T ss_dssp CCCEEEESSCCS
T ss_pred CCceEEEEecCC
Confidence 889999999994
No 76
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=63.01 E-value=17 Score=32.83 Aligned_cols=65 Identities=15% Similarity=0.205 Sum_probs=40.9
Q ss_pred ceEEEecCCCC--hHHHHhhhCCCCEEEecCCcccc-c-----eeecCCCccchHHHHHHHHHHHhcCCCCCcEEeeCC
Q psy14926 20 LKLIVTSATMD--ADKFSNFFGNVPTFHIPGRTFPV-D-----VFFAKNPVEDYVDSAVKQALQIHLIPNPDQKYPWPC 90 (140)
Q Consensus 20 LklVlMSATld--~~~f~~yf~~~pvi~i~G~~~pV-~-----~~y~~~~~~d~v~~~~~~v~~i~~~~~~GdILVFl~ 90 (140)
-|+..||+|+. ++.|.+.|+ ..++.||... |+ . ..|.. ..+...+.+..+...|.. ..-||||-.
T Consensus 410 ~kL~GMTGTa~te~~Ef~~iY~-l~vv~IPtnk-p~~R~d~~d~vy~t--~~eK~~al~~~I~~~~~~--gqpVLVFt~ 482 (822)
T 3jux_A 410 EKLAGMTGTAKTEESEFVQVYG-MEVVVIPTHK-PMIRKDHDDLVFRT--QKEKYEKIVEEIEKRYKK--GQPVLVGTT 482 (822)
T ss_dssp SEEEEEESSCGGGHHHHHHHSC-CCEEECCCSS-CCCCEECCCEEESS--HHHHHHHHHHHHHHHHHH--TCCEEEEES
T ss_pred hHHeEECCCCchHHHHHHHHhC-CeEEEECCCC-CcceeecCcEEEec--HHHHHHHHHHHHHHHhhC--CCCEEEEEC
Confidence 37999999996 455888886 8899998642 21 1 22322 234555666666665532 235999953
No 77
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=62.73 E-value=16 Score=25.32 Aligned_cols=53 Identities=11% Similarity=0.013 Sum_probs=30.3
Q ss_pred HHHHhcCCCCCcEEeeCCCc-eeeccccCCchhhHHHHHH-HhhhhhhccCCCCCHHHHhhhccc
Q psy14926 73 ALQIHLIPNPDQKYPWPCFQ-KVRFGRYSGPKLRYLGLCI-EKAQKELALFTTLPLATGRSNFAD 135 (140)
Q Consensus 73 v~~i~~~~~~GdILVFl~~~-ei~~~~~~~~~~~~i~~~~-~~~~~~lpLh~~lp~~eQ~~~f~~ 135 (140)
+.++......+.+|||.... ..+ .+.... ........+||.++..++++++..
T Consensus 25 L~~ll~~~~~~~~lVF~~~~~~~~----------~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~ 79 (175)
T 2rb4_A 25 LCNIYGSITIGQAIIFCQTRRNAK----------WLTVEMIQDGHQVSLLSGELTVEQRASIIQR 79 (175)
T ss_dssp HHHHHTTSCCSEEEEECSCHHHHH----------HHHHHHHTTTCCEEEECSSCCHHHHHHHHHH
T ss_pred HHHHHHhCCCCCEEEEECCHHHHH----------HHHHHHHHcCCcEEEEeCCCCHHHHHHHHHH
Confidence 33443444568899995433 221 111111 122335669999999999887643
No 78
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=62.35 E-value=26 Score=22.28 Aligned_cols=31 Identities=13% Similarity=0.266 Sum_probs=17.9
Q ss_pred HHHHHHHH--hCCCceEEEecCCCChHHHHhhh
Q psy14926 8 LIYLQVIA--RRQDLKLIVTSATMDADKFSNFF 38 (140)
Q Consensus 8 ~llk~~~~--~r~dLklVlMSATld~~~f~~yf 38 (140)
.+++.+.. ..++.++|++|+..+.+...+.+
T Consensus 71 ~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~ 103 (143)
T 3cnb_A 71 SICHRIKSTPATANIIVIAMTGALTDDNVSRIV 103 (143)
T ss_dssp HHHHHHHTSTTTTTSEEEEEESSCCHHHHHHHH
T ss_pred HHHHHHHhCccccCCcEEEEeCCCCHHHHHHHH
Confidence 44555544 34667777777766655544444
No 79
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=61.80 E-value=27 Score=21.97 Aligned_cols=31 Identities=16% Similarity=0.216 Sum_probs=18.6
Q ss_pred HHHHHHHHhCCCceEEEecCCCChHHHHhhh
Q psy14926 8 LIYLQVIARRQDLKLIVTSATMDADKFSNFF 38 (140)
Q Consensus 8 ~llk~~~~~r~dLklVlMSATld~~~f~~yf 38 (140)
.+++.+....++.++|++|+..+.+...+.+
T Consensus 68 ~~~~~l~~~~~~~~ii~~t~~~~~~~~~~~~ 98 (130)
T 3eod_A 68 KLLEHIRNRGDQTPVLVISATENMADIAKAL 98 (130)
T ss_dssp HHHHHHHHTTCCCCEEEEECCCCHHHHHHHH
T ss_pred HHHHHHHhcCCCCCEEEEEcCCCHHHHHHHH
Confidence 4455555555677777777776665555444
No 80
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=61.60 E-value=27 Score=22.15 Aligned_cols=29 Identities=17% Similarity=0.254 Sum_probs=16.0
Q ss_pred HHHHHHHhCCCceEEEecCCCChHHHHhhh
Q psy14926 9 IYLQVIARRQDLKLIVTSATMDADKFSNFF 38 (140)
Q Consensus 9 llk~~~~~r~dLklVlMSATld~~~f~~yf 38 (140)
+++.+... ++.++|++|+..+.+...+.+
T Consensus 73 ~~~~l~~~-~~~~ii~ls~~~~~~~~~~~~ 101 (140)
T 3cg0_A 73 TAARLAAG-CNLPIIFITSSQDVETFQRAK 101 (140)
T ss_dssp HHHHHHHH-SCCCEEEEECCCCHHHHHHHH
T ss_pred HHHHHHhC-CCCCEEEEecCCCHHHHHHHH
Confidence 44444334 666666666666655554444
No 81
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=60.83 E-value=23 Score=32.58 Aligned_cols=14 Identities=36% Similarity=0.323 Sum_probs=11.8
Q ss_pred CCceEEEecCCCCh
Q psy14926 18 QDLKLIVTSATMDA 31 (140)
Q Consensus 18 ~dLklVlMSATld~ 31 (140)
++.++++||||+..
T Consensus 249 ~~~q~ll~SAT~~p 262 (1104)
T 4ddu_A 249 KPGILVVSSATAKP 262 (1104)
T ss_dssp CCCEEEEECBSSCC
T ss_pred CCceEEEEcCCCCc
Confidence 78999999999543
No 82
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=60.63 E-value=21 Score=22.72 Aligned_cols=32 Identities=22% Similarity=0.321 Sum_probs=20.5
Q ss_pred HHHHHHHHHh-CCCceEEEecCCCChHHHHhhh
Q psy14926 7 FLIYLQVIAR-RQDLKLIVTSATMDADKFSNFF 38 (140)
Q Consensus 7 L~llk~~~~~-r~dLklVlMSATld~~~f~~yf 38 (140)
+.+++.+... .++.++|++|+..+.+...+.+
T Consensus 68 ~~~~~~l~~~~~~~~~ii~~s~~~~~~~~~~~~ 100 (136)
T 3hdv_A 68 LDLIRTIRASERAALSIIVVSGDTDVEEAVDVM 100 (136)
T ss_dssp HHHHHHHHTSTTTTCEEEEEESSCCHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCCEEEEeCCCChHHHHHHH
Confidence 3455555444 5777888888877766665555
No 83
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=60.34 E-value=29 Score=22.33 Aligned_cols=31 Identities=10% Similarity=0.180 Sum_probs=16.2
Q ss_pred HHHHHHHH--hCCCceEEEecCCCChHHHHhhh
Q psy14926 8 LIYLQVIA--RRQDLKLIVTSATMDADKFSNFF 38 (140)
Q Consensus 8 ~llk~~~~--~r~dLklVlMSATld~~~f~~yf 38 (140)
.+++.+.. ..++.++|++|+..+.+...+.+
T Consensus 69 ~~~~~l~~~~~~~~~pii~ls~~~~~~~~~~~~ 101 (147)
T 2zay_A 69 DLFNSLKKNPQTASIPVIALSGRATAKEEAQLL 101 (147)
T ss_dssp HHHHHHHTSTTTTTSCEEEEESSCCHHHHHHHH
T ss_pred HHHHHHHcCcccCCCCEEEEeCCCCHHHHHHHH
Confidence 34444443 34566666666665555444433
No 84
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=59.59 E-value=13 Score=28.40 Aligned_cols=31 Identities=16% Similarity=0.247 Sum_probs=20.6
Q ss_pred hCCCceEEEecCCCCh--HHHHhh-hCCCCEEEe
Q psy14926 16 RRQDLKLIVTSATMDA--DKFSNF-FGNVPTFHI 46 (140)
Q Consensus 16 ~r~dLklVlMSATld~--~~f~~y-f~~~pvi~i 46 (140)
.+++.++++||||+.. ..|.+. +.++-+|.+
T Consensus 264 ~~~~~q~i~~SAT~~~~v~~~a~~~l~~p~~i~~ 297 (300)
T 3fmo_B 264 LPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKL 297 (300)
T ss_dssp SCTTCEEEEEESCCCHHHHHHHHHHSSSCEEEEE
T ss_pred CCCCCEEEEEeccCCHHHHHHHHHHCCCCeEEEe
Confidence 4567899999999974 445554 444434544
No 85
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=59.39 E-value=9.4 Score=26.79 Aligned_cols=29 Identities=21% Similarity=0.371 Sum_probs=18.5
Q ss_pred HHHHHHHh-CCCceEEEecCCCChHHHHhhh
Q psy14926 9 IYLQVIAR-RQDLKLIVTSATMDADKFSNFF 38 (140)
Q Consensus 9 llk~~~~~-r~dLklVlMSATld~~~f~~yf 38 (140)
.++.++.. .++.++++||||+..+ ..++.
T Consensus 166 ~l~~i~~~~~~~~~~l~~SAT~~~~-~~~~~ 195 (206)
T 1vec_A 166 IMEDIILTLPKNRQILLYSATFPLS-VQKFM 195 (206)
T ss_dssp HHHHHHHHSCTTCEEEEEESCCCHH-HHHHH
T ss_pred HHHHHHHhCCccceEEEEEeeCCHH-HHHHH
Confidence 34444443 3589999999999643 34443
No 86
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=59.38 E-value=13 Score=23.61 Aligned_cols=32 Identities=16% Similarity=0.001 Sum_probs=19.6
Q ss_pred HHHHHHHHHhCCCceEEEecCCCChHHHHhhh
Q psy14926 7 FLIYLQVIARRQDLKLIVTSATMDADKFSNFF 38 (140)
Q Consensus 7 L~llk~~~~~r~dLklVlMSATld~~~f~~yf 38 (140)
+.+++.+....++.++|++|+..+.+...+.+
T Consensus 62 ~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~ 93 (134)
T 3f6c_A 62 IQVLETLRKRQYSGIIIIVSAKNDHFYGKHCA 93 (134)
T ss_dssp HHHHHHHHHTTCCSEEEEEECC---CTHHHHH
T ss_pred HHHHHHHHhcCCCCeEEEEeCCCChHHHHHHH
Confidence 45566666667788888888877765555544
No 87
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=59.13 E-value=26 Score=22.91 Aligned_cols=31 Identities=3% Similarity=-0.053 Sum_probs=18.4
Q ss_pred HHHHHHHHhCCCceEEEecCCCChHHHHhhh
Q psy14926 8 LIYLQVIARRQDLKLIVTSATMDADKFSNFF 38 (140)
Q Consensus 8 ~llk~~~~~r~dLklVlMSATld~~~f~~yf 38 (140)
.+++.+....++.++|++|+..+.+...+.+
T Consensus 65 ~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~ 95 (151)
T 3kcn_A 65 EVIQKARLISPNSVYLMLTGNQDLTTAMEAV 95 (151)
T ss_dssp HHHHHHHHHCSSCEEEEEECGGGHHHHHHHH
T ss_pred HHHHHHHhcCCCcEEEEEECCCCHHHHHHHH
Confidence 3455554556677777777766655555444
No 88
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=58.78 E-value=31 Score=22.05 Aligned_cols=32 Identities=25% Similarity=0.203 Sum_probs=22.2
Q ss_pred HHHHHHHHHhCCCceEEEecCCCChHHHHhhh
Q psy14926 7 FLIYLQVIARRQDLKLIVTSATMDADKFSNFF 38 (140)
Q Consensus 7 L~llk~~~~~r~dLklVlMSATld~~~f~~yf 38 (140)
+.+++.+....+++++|++|+..+.+...+.+
T Consensus 63 ~~~~~~l~~~~~~~pii~ls~~~~~~~~~~~~ 94 (142)
T 2qxy_A 63 LNLIRRIREEFPDTKVAVLSAYVDKDLIINSV 94 (142)
T ss_dssp HHHHHHHHHHCTTCEEEEEESCCCHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCEEEEECCCCHHHHHHHH
Confidence 45566666667788888888887766655554
No 89
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=58.61 E-value=34 Score=22.02 Aligned_cols=31 Identities=13% Similarity=0.056 Sum_probs=20.0
Q ss_pred HHHHHHHHhCCCceEEEecCCCChHHHHhhh
Q psy14926 8 LIYLQVIARRQDLKLIVTSATMDADKFSNFF 38 (140)
Q Consensus 8 ~llk~~~~~r~dLklVlMSATld~~~f~~yf 38 (140)
.+++.+....++.++|++|+.-+.+...+.+
T Consensus 65 ~l~~~l~~~~~~~~ii~ls~~~~~~~~~~~~ 95 (137)
T 3cfy_A 65 DVLDWINQNDIPTSVIIATAHGSVDLAVNLI 95 (137)
T ss_dssp HHHHHHHHTTCCCEEEEEESSCCHHHHHHHH
T ss_pred HHHHHHHhcCCCCCEEEEEecCcHHHHHHHH
Confidence 4455555556777788887777766655554
No 90
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=58.29 E-value=24 Score=24.45 Aligned_cols=45 Identities=13% Similarity=0.118 Sum_probs=26.9
Q ss_pred CCCcEEeeCCCc-eeeccccCCchhhHHHHHH-HhhhhhhccCCCCCHHHHhhhccc
Q psy14926 81 NPDQKYPWPCFQ-KVRFGRYSGPKLRYLGLCI-EKAQKELALFTTLPLATGRSNFAD 135 (140)
Q Consensus 81 ~~GdILVFl~~~-ei~~~~~~~~~~~~i~~~~-~~~~~~lpLh~~lp~~eQ~~~f~~ 135 (140)
..+.+|||.... +.+ .+.... ........+||.++..++++++..
T Consensus 30 ~~~~~lVF~~~~~~~~----------~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~ 76 (172)
T 1t5i_A 30 EFNQVVIFVKSVQRCI----------ALAQLLVEQNFPAIAIHRGMPQEERLSRYQQ 76 (172)
T ss_dssp CCSSEEEECSSHHHHH----------HHHHHHHHTTCCEEEECTTSCHHHHHHHHHH
T ss_pred CCCcEEEEECCHHHHH----------HHHHHHHhcCCCEEEEECCCCHHHHHHHHHH
Confidence 457899995433 221 111111 122345679999999999887653
No 91
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=58.25 E-value=44 Score=29.93 Aligned_cols=18 Identities=11% Similarity=0.097 Sum_probs=0.0
Q ss_pred hccCCCCCHHHHhhhccc
Q psy14926 118 LALFTTLPLATGRSNFAD 135 (140)
Q Consensus 118 lpLh~~lp~~eQ~~~f~~ 135 (140)
..+||.++..+|+.++..
T Consensus 671 ~~~hg~m~~~eR~~il~~ 688 (936)
T 4a2w_A 671 RDQTTGMTLPSQKGVLDA 688 (936)
T ss_dssp ------------------
T ss_pred cccCCCCCHHHHHHHHHH
Confidence 347999999999988753
No 92
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=57.92 E-value=19 Score=23.41 Aligned_cols=23 Identities=17% Similarity=0.141 Sum_probs=12.6
Q ss_pred HHHHHHHHhCCCceEEEecCCCC
Q psy14926 8 LIYLQVIARRQDLKLIVTSATMD 30 (140)
Q Consensus 8 ~llk~~~~~r~dLklVlMSATld 30 (140)
.+++.+....++.++|++|+..+
T Consensus 66 ~l~~~l~~~~~~~~ii~ls~~~~ 88 (141)
T 3cu5_A 66 ELVDNILKLYPDCSVIFMSGYSD 88 (141)
T ss_dssp HHHHHHHHHCTTCEEEEECCSTT
T ss_pred HHHHHHHhhCCCCcEEEEeCCCc
Confidence 34444444456666666666544
No 93
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=57.29 E-value=26 Score=24.97 Aligned_cols=21 Identities=5% Similarity=-0.010 Sum_probs=16.4
Q ss_pred hhhhccCCCCCHHHHhhhccc
Q psy14926 115 QKELALFTTLPLATGRSNFAD 135 (140)
Q Consensus 115 ~~~lpLh~~lp~~eQ~~~f~~ 135 (140)
.....+||.++.+++++++..
T Consensus 79 ~~~~~lhg~~~~~~R~~~l~~ 99 (191)
T 2p6n_A 79 VEAVAIHGGKDQEERTKAIEA 99 (191)
T ss_dssp CCEEEECTTSCHHHHHHHHHH
T ss_pred CcEEEEeCCCCHHHHHHHHHH
Confidence 345679999999999887653
No 94
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=56.71 E-value=32 Score=21.37 Aligned_cols=31 Identities=13% Similarity=0.158 Sum_probs=18.7
Q ss_pred HHHHHHHHhCCCceEEEecCCCChHHHHhhh
Q psy14926 8 LIYLQVIARRQDLKLIVTSATMDADKFSNFF 38 (140)
Q Consensus 8 ~llk~~~~~r~dLklVlMSATld~~~f~~yf 38 (140)
.+++.+....++.++|++|+.-+.+...+.+
T Consensus 64 ~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~ 94 (124)
T 1srr_A 64 EILKRMKVIDENIRVIIMTAYGELDMIQESK 94 (124)
T ss_dssp HHHHHHHHHCTTCEEEEEESSCCHHHHHHHH
T ss_pred HHHHHHHHhCCCCCEEEEEccCchHHHHHHH
Confidence 3455554456677777777776655544443
No 95
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=56.54 E-value=23 Score=30.35 Aligned_cols=19 Identities=42% Similarity=0.572 Sum_probs=13.6
Q ss_pred eEEEecCCCCh-HHHHhhhC
Q psy14926 21 KLIVTSATMDA-DKFSNFFG 39 (140)
Q Consensus 21 klVlMSATld~-~~f~~yf~ 39 (140)
.+|+||||+.. +.|.+-+|
T Consensus 377 ~~il~SaTL~p~~~~~~~lG 396 (620)
T 4a15_A 377 KTIHMSGTLDPFDFYSDITG 396 (620)
T ss_dssp EEEEEESSCCSHHHHHHHHC
T ss_pred eEEEEccCCCcHHHHHHHhC
Confidence 58999999964 44555555
No 96
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=56.28 E-value=29 Score=22.65 Aligned_cols=32 Identities=3% Similarity=-0.018 Sum_probs=20.1
Q ss_pred HHHHHHHHHhCCCceEEEecCCCChHHHHhhh
Q psy14926 7 FLIYLQVIARRQDLKLIVTSATMDADKFSNFF 38 (140)
Q Consensus 7 L~llk~~~~~r~dLklVlMSATld~~~f~~yf 38 (140)
+.+++.+....++.++|++|+..+.+...+.+
T Consensus 67 ~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~ 98 (153)
T 3cz5_A 67 IEATRHIRQWDGAARILIFTMHQGSAFALKAF 98 (153)
T ss_dssp HHHHHHHHHHCTTCCEEEEESCCSHHHHHHHH
T ss_pred HHHHHHHHHhCCCCeEEEEECCCCHHHHHHHH
Confidence 34555555556777777777777666555554
No 97
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=55.36 E-value=32 Score=21.92 Aligned_cols=26 Identities=23% Similarity=0.379 Sum_probs=13.2
Q ss_pred HHHHHHH--hCCCceEEEecCCCChHHH
Q psy14926 9 IYLQVIA--RRQDLKLIVTSATMDADKF 34 (140)
Q Consensus 9 llk~~~~--~r~dLklVlMSATld~~~f 34 (140)
+++++.. ..+++++|++|+..+.+..
T Consensus 68 ~~~~l~~~~~~~~~~ii~~s~~~~~~~~ 95 (140)
T 3grc_A 68 LIRALRRDSRTRDLAIVVVSANAREGEL 95 (140)
T ss_dssp HHHHHHTSGGGTTCEEEEECTTHHHHHH
T ss_pred HHHHHHhCcccCCCCEEEEecCCChHHH
Confidence 3444433 3456666666665544433
No 98
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=55.15 E-value=21 Score=23.40 Aligned_cols=32 Identities=6% Similarity=-0.027 Sum_probs=17.2
Q ss_pred HHHHHHHHHhCCCceEEEecCCCChHHHHhhh
Q psy14926 7 FLIYLQVIARRQDLKLIVTSATMDADKFSNFF 38 (140)
Q Consensus 7 L~llk~~~~~r~dLklVlMSATld~~~f~~yf 38 (140)
+.+++.+....++.++|++|+..+.+...+.+
T Consensus 66 ~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~ 97 (154)
T 2qsj_A 66 IDGLVRLKRFDPSNAVALISGETDHELIRAAL 97 (154)
T ss_dssp HHHHHHHHHHCTTSEEEEC-----CHHHHHHH
T ss_pred HHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHH
Confidence 34556665566778888888777665555554
No 99
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=54.07 E-value=39 Score=21.41 Aligned_cols=31 Identities=10% Similarity=0.030 Sum_probs=17.3
Q ss_pred HHHHHHHHhCCCceEEEecCCCChHHHHhhh
Q psy14926 8 LIYLQVIARRQDLKLIVTSATMDADKFSNFF 38 (140)
Q Consensus 8 ~llk~~~~~r~dLklVlMSATld~~~f~~yf 38 (140)
.+++.+....++.++|++|+..+.+...+.+
T Consensus 64 ~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~ 94 (132)
T 3crn_A 64 ELLEKAHKLRPGMKKIMVTGYASLENSVFSL 94 (132)
T ss_dssp HHHHHHHHHCTTSEEEEEESCCCHHHHHHHH
T ss_pred HHHHHHHhhCCCCcEEEEeccccHHHHHHHH
Confidence 3444444445667777777666655444443
No 100
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=53.59 E-value=68 Score=29.32 Aligned_cols=64 Identities=13% Similarity=0.115 Sum_probs=41.2
Q ss_pred eEEEecCCCCh--HHHHhhhCCCCEEEecCCccccce------eecCCCccchHHHHHHHHHHHhcCCCCCcEEeeCC
Q psy14926 21 KLIVTSATMDA--DKFSNFFGNVPTFHIPGRTFPVDV------FFAKNPVEDYVDSAVKQALQIHLIPNPDQKYPWPC 90 (140)
Q Consensus 21 klVlMSATld~--~~f~~yf~~~pvi~i~G~~~pV~~------~y~~~~~~d~v~~~~~~v~~i~~~~~~GdILVFl~ 90 (140)
|+.-|++|+.+ +.|.+.|+ ..++.||.. .|+.- .|.. ..+...+.+..+...|.. ..-||||-.
T Consensus 397 kL~GMTGTa~te~~Ef~~iY~-l~vv~IPtn-~p~~R~d~~d~v~~t--~~~K~~al~~~i~~~~~~--gqpvLVft~ 468 (922)
T 1nkt_A 397 KLAGMTGTAQTEAAELHEIYK-LGVVSIPTN-MPMIREDQSDLIYKT--EEAKYIAVVDDVAERYAK--GQPVLIGTT 468 (922)
T ss_dssp EEEEEESCCGGGHHHHHHHHC-CEEEECCCS-SCCCCEECCCEEESC--HHHHHHHHHHHHHHHHHT--TCCEEEEES
T ss_pred hhhccccCchhHHHHHHHHhC-CCeEEeCCC-CCcccccCCcEEEeC--HHHHHHHHHHHHHHHHhc--CCcEEEEEC
Confidence 89999999965 56888886 789999984 44422 2322 234455555556555543 234999953
No 101
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=52.93 E-value=40 Score=21.13 Aligned_cols=21 Identities=14% Similarity=0.419 Sum_probs=11.8
Q ss_pred CCceEEEecCCCChHHHHhhh
Q psy14926 18 QDLKLIVTSATMDADKFSNFF 38 (140)
Q Consensus 18 ~dLklVlMSATld~~~f~~yf 38 (140)
+++++|++|+..+.+...+.+
T Consensus 84 ~~~pii~ls~~~~~~~~~~~~ 104 (140)
T 1k68_A 84 KRIPVVVLSTSINEDDIFHSY 104 (140)
T ss_dssp GGSCEEEEESCCCHHHHHHHH
T ss_pred ccccEEEEecCCcHHHHHHHH
Confidence 556666666665555444443
No 102
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=52.85 E-value=65 Score=29.11 Aligned_cols=64 Identities=17% Similarity=0.263 Sum_probs=39.3
Q ss_pred eEEEecCCCC--hHHHHhhhCCCCEEEecCCccccc------eeecCCCccchHHHHHHHHHHHhcCCCCCcEEeeCC
Q psy14926 21 KLIVTSATMD--ADKFSNFFGNVPTFHIPGRTFPVD------VFFAKNPVEDYVDSAVKQALQIHLIPNPDQKYPWPC 90 (140)
Q Consensus 21 klVlMSATld--~~~f~~yf~~~pvi~i~G~~~pV~------~~y~~~~~~d~v~~~~~~v~~i~~~~~~GdILVFl~ 90 (140)
|+.-|++|+. ++.|.+.|+ ..++.||.. .|+. ..|.. ..+...+.+..+...|.. ...+|||-.
T Consensus 369 kl~GmTGTa~te~~e~~~iY~-l~vv~IPtn-~p~~r~d~~d~v~~~--~~~K~~al~~~i~~~~~~--~~pvLVft~ 440 (844)
T 1tf5_A 369 KLAGMTGTAKTEEEEFRNIYN-MQVVTIPTN-RPVVRDDRPDLIYRT--MEGKFKAVAEDVAQRYMT--GQPVLVGTV 440 (844)
T ss_dssp EEEEEESCCGGGHHHHHHHHC-CCEEECCCS-SCCCCEECCCEEESS--HHHHHHHHHHHHHHHHHH--TCCEEEEES
T ss_pred hhccCCcccchhHHHHHHHhC-CceEEecCC-CCcccccCCcEEEeC--HHHHHHHHHHHHHHHHhc--CCcEEEEEC
Confidence 7889999996 466888886 788888754 3432 23322 234445555555554432 235999953
No 103
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=52.61 E-value=38 Score=20.80 Aligned_cols=31 Identities=10% Similarity=0.048 Sum_probs=17.2
Q ss_pred HHHHHHHHhCCCceEEEecCCCChHHHHhhh
Q psy14926 8 LIYLQVIARRQDLKLIVTSATMDADKFSNFF 38 (140)
Q Consensus 8 ~llk~~~~~r~dLklVlMSATld~~~f~~yf 38 (140)
.+++.+....++.++|++|+..+.+...+.+
T Consensus 61 ~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~ 91 (121)
T 2pl1_A 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVL 91 (121)
T ss_dssp HHHHHHHHTTCCSCEEEEESCCCHHHHHHHH
T ss_pred HHHHHHHhcCCCCCEEEEecCCCHHHHHHHH
Confidence 3444444445666677777666655544443
No 104
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=52.02 E-value=45 Score=28.74 Aligned_cols=98 Identities=12% Similarity=0.013 Sum_probs=47.6
Q ss_pred CceEEEecCCCChHHHHhhhCCCCEEEecCC----ccccceeecCCCccchHHHHHHHHHHHhcCCCCCcEEeeCCCc-e
Q psy14926 19 DLKLIVTSATMDADKFSNFFGNVPTFHIPGR----TFPVDVFFAKNPVEDYVDSAVKQALQIHLIPNPDQKYPWPCFQ-K 93 (140)
Q Consensus 19 dLklVlMSATld~~~f~~yf~~~pvi~i~G~----~~pV~~~y~~~~~~d~v~~~~~~v~~i~~~~~~GdILVFl~~~-e 93 (140)
.-+++.+|||.....+.. . ..++....+ ..|. +... +..+.+...+..+..... ..+.+|||.... .
T Consensus 380 ~~q~i~~SAT~~~~~~~~--~-~~~~~~~~r~~~l~~p~-i~v~--~~~~~~~~Ll~~l~~~~~--~~~~vlVf~~t~~~ 451 (664)
T 1c4o_A 380 VSQVVFVSATPGPFELAH--S-GRVVEQIIRPTGLLDPL-VRVK--PTENQILDLMEGIRERAA--RGERTLVTVLTVRM 451 (664)
T ss_dssp CSEEEEEESSCCHHHHHH--C-SEEEEECSCTTCCCCCE-EEEE--CSTTHHHHHHHHHHHHHH--TTCEEEEECSSHHH
T ss_pred cCCEEEEecCCCHHHHHh--h-hCeeeeeeccCCCCCCe-EEEe--cccchHHHHHHHHHHHHh--cCCEEEEEECCHHH
Confidence 457899999997554432 1 122222222 1222 1111 122334444444433222 246899995332 2
Q ss_pred eeccccCCchhhHHHHHH-HhhhhhhccCCCCCHHHHhhhcc
Q psy14926 94 VRFGRYSGPKLRYLGLCI-EKAQKELALFTTLPLATGRSNFA 134 (140)
Q Consensus 94 i~~~~~~~~~~~~i~~~~-~~~~~~lpLh~~lp~~eQ~~~f~ 134 (140)
.+ .+.... +.......+||.++..++..++.
T Consensus 452 ae----------~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~ 483 (664)
T 1c4o_A 452 AE----------ELTSFLVEHGIRARYLHHELDAFKRQALIR 483 (664)
T ss_dssp HH----------HHHHHHHHTTCCEEEECTTCCHHHHHHHHH
T ss_pred HH----------HHHHHHHhcCCCceeecCCCCHHHHHHHHH
Confidence 21 111111 11223445899999999988853
No 105
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=52.01 E-value=99 Score=26.52 Aligned_cols=98 Identities=12% Similarity=0.022 Sum_probs=47.5
Q ss_pred CceEEEecCCCChHHHHhhhCCCCEEEec----CCccccceeecCCCccchHHHHHHHHHHHhcCCCCCcEEeeCCCc-e
Q psy14926 19 DLKLIVTSATMDADKFSNFFGNVPTFHIP----GRTFPVDVFFAKNPVEDYVDSAVKQALQIHLIPNPDQKYPWPCFQ-K 93 (140)
Q Consensus 19 dLklVlMSATld~~~f~~yf~~~pvi~i~----G~~~pV~~~y~~~~~~d~v~~~~~~v~~i~~~~~~GdILVFl~~~-e 93 (140)
.-+++++|||.....+.. . ..++... |...|+ +... +..+.+...+..+.+.. ...+.+|||.... .
T Consensus 386 ~~q~i~~SAT~~~~~~~~--~-~~~~~~~~r~~~l~~p~-i~v~--~~~~~~~~Ll~~l~~~~--~~~~~vlVf~~t~~~ 457 (661)
T 2d7d_A 386 MHNIVYVSATPGPYEIEH--T-DEMVEQIIRPTGLLDPL-IDVR--PIEGQIDDLIGEIQARI--ERNERVLVTTLTKKM 457 (661)
T ss_dssp CSEEEEECSSCCHHHHHH--C-SSCEEECCCTTCCCCCE-EEEE--CSTTHHHHHHHHHHHHH--TTTCEEEEECSSHHH
T ss_pred CCCEEEEecCCChhHHHh--h-hCeeeeeecccCCCCCe-EEEe--cccchHHHHHHHHHHHH--hcCCeEEEEECCHHH
Confidence 557899999997554332 1 1122222 222232 1111 12233444444443322 2346899995332 2
Q ss_pred eeccccCCchhhHHHHHH-HhhhhhhccCCCCCHHHHhhhcc
Q psy14926 94 VRFGRYSGPKLRYLGLCI-EKAQKELALFTTLPLATGRSNFA 134 (140)
Q Consensus 94 i~~~~~~~~~~~~i~~~~-~~~~~~lpLh~~lp~~eQ~~~f~ 134 (140)
.+ .+.... +.......+||.++..++.+++.
T Consensus 458 ae----------~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~ 489 (661)
T 2d7d_A 458 SE----------DLTDYLKEIGIKVNYLHSEIKTLERIEIIR 489 (661)
T ss_dssp HH----------HHHHHHHHTTCCEEEECTTCCHHHHHHHHH
T ss_pred HH----------HHHHHHHhcCCCeEEEeCCCCHHHHHHHHH
Confidence 21 111111 11223445899999999988853
No 106
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=51.88 E-value=38 Score=22.10 Aligned_cols=31 Identities=16% Similarity=0.264 Sum_probs=18.2
Q ss_pred HHHHHHHHhCCCceEEEecCCCChHHHHhhh
Q psy14926 8 LIYLQVIARRQDLKLIVTSATMDADKFSNFF 38 (140)
Q Consensus 8 ~llk~~~~~r~dLklVlMSATld~~~f~~yf 38 (140)
.+++.+....+++++|+||+..+.+...+.+
T Consensus 64 ~~~~~l~~~~~~~pii~ls~~~~~~~~~~~~ 94 (155)
T 1qkk_A 64 ALFRKILALDPDLPMILVTGHGDIPMAVQAI 94 (155)
T ss_dssp HHHHHHHHHCTTSCEEEEECGGGHHHHHHHH
T ss_pred HHHHHHHhhCCCCCEEEEECCCChHHHHHHH
Confidence 3455554555677777777766655555444
No 107
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=51.67 E-value=23 Score=22.54 Aligned_cols=32 Identities=16% Similarity=0.177 Sum_probs=20.9
Q ss_pred HHHHHHHHHhCCCceEEEecCCCChHHHHhhh
Q psy14926 7 FLIYLQVIARRQDLKLIVTSATMDADKFSNFF 38 (140)
Q Consensus 7 L~llk~~~~~r~dLklVlMSATld~~~f~~yf 38 (140)
+.+++.+....+++++|++|+..+.+...+.+
T Consensus 68 ~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~ 99 (140)
T 2qr3_A 68 LFWLHEIKRQYRDLPVVLFTAYADIDLAVRGI 99 (140)
T ss_dssp HHHHHHHHHHCTTCCEEEEEEGGGHHHHHHHH
T ss_pred HHHHHHHHhhCcCCCEEEEECCCCHHHHHHHH
Confidence 34556665566778888888776665555554
No 108
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=51.64 E-value=41 Score=21.38 Aligned_cols=21 Identities=0% Similarity=0.319 Sum_probs=11.0
Q ss_pred CCceEEEecCCCChHHHHhhh
Q psy14926 18 QDLKLIVTSATMDADKFSNFF 38 (140)
Q Consensus 18 ~dLklVlMSATld~~~f~~yf 38 (140)
++.++|++|+..+.+...+.+
T Consensus 91 ~~~~ii~~t~~~~~~~~~~~~ 111 (149)
T 1k66_A 91 KKIPVVIMTTSSNPKDIEICY 111 (149)
T ss_dssp GGSCEEEEESCCCHHHHHHHH
T ss_pred CCCeEEEEeCCCCHHHHHHHH
Confidence 455666666655544444433
No 109
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=51.14 E-value=5.9 Score=27.35 Aligned_cols=45 Identities=11% Similarity=-0.015 Sum_probs=26.7
Q ss_pred CCCcEEeeCCCc-eeeccccCCchhhHHHHHH-HhhhhhhccCCCCCHHHHhhhccc
Q psy14926 81 NPDQKYPWPCFQ-KVRFGRYSGPKLRYLGLCI-EKAQKELALFTTLPLATGRSNFAD 135 (140)
Q Consensus 81 ~~GdILVFl~~~-ei~~~~~~~~~~~~i~~~~-~~~~~~lpLh~~lp~~eQ~~~f~~ 135 (140)
..+.+|||.... +.+ .+.... ........+||.++..++++++..
T Consensus 34 ~~~~~lVF~~~~~~~~----------~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~ 80 (163)
T 2hjv_A 34 NPDSCIIFCRTKEHVN----------QLTDELDDLGYPCDKIHGGMIQEDRFDVMNE 80 (163)
T ss_dssp CCSSEEEECSSHHHHH----------HHHHHHHHTTCCEEEECTTSCHHHHHHHHHH
T ss_pred CCCcEEEEECCHHHHH----------HHHHHHHHcCCcEEEEeCCCCHHHHHHHHHH
Confidence 357899995433 321 111111 122345669999999998887643
No 110
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=50.95 E-value=56 Score=23.50 Aligned_cols=33 Identities=12% Similarity=-0.012 Sum_probs=24.5
Q ss_pred HHHHHHHHHhCCCceEEEecCCCChHHHHhhhC
Q psy14926 7 FLIYLQVIARRQDLKLIVTSATMDADKFSNFFG 39 (140)
Q Consensus 7 L~llk~~~~~r~dLklVlMSATld~~~f~~yf~ 39 (140)
+.+++++....++.++|++|+.-+.+...+.+.
T Consensus 83 ~~~~~~lr~~~~~~~ii~lt~~~~~~~~~~~~~ 115 (250)
T 3r0j_A 83 FGVLRRLRADGIDAPALFLTARDSLQDKIAGLT 115 (250)
T ss_dssp HHHHHHHHHTTCCCCEEEEECSTTHHHHHHHHT
T ss_pred HHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHH
Confidence 456666666678899999999888777666664
No 111
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=50.86 E-value=44 Score=23.34 Aligned_cols=32 Identities=16% Similarity=0.184 Sum_probs=24.5
Q ss_pred HHHHHHHHHhCCCceEEEecCCCChHHHHhhh
Q psy14926 7 FLIYLQVIARRQDLKLIVTSATMDADKFSNFF 38 (140)
Q Consensus 7 L~llk~~~~~r~dLklVlMSATld~~~f~~yf 38 (140)
+.+++.+....++.++|++|+.-+.+...+.+
T Consensus 59 ~~~~~~lr~~~~~~~ii~lt~~~~~~~~~~~~ 90 (220)
T 1p2f_A 59 YEICRMIKETRPETWVILLTLLSDDESVLKGF 90 (220)
T ss_dssp HHHHHHHHHHCTTSEEEEEESCCSHHHHHHHH
T ss_pred HHHHHHHHhcCCCCcEEEEEcCCCHHHHHHHH
Confidence 45667766667899999999998877666655
No 112
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=49.88 E-value=54 Score=22.78 Aligned_cols=32 Identities=6% Similarity=0.073 Sum_probs=23.4
Q ss_pred HHHHHHHHHhCCCceEEEecCCCChHHHHhhh
Q psy14926 7 FLIYLQVIARRQDLKLIVTSATMDADKFSNFF 38 (140)
Q Consensus 7 L~llk~~~~~r~dLklVlMSATld~~~f~~yf 38 (140)
+.+++.+....++.++|++|+.-+.+...+.+
T Consensus 67 ~~~~~~lr~~~~~~~ii~ls~~~~~~~~~~~~ 98 (215)
T 1a04_A 67 LETLDKLREKSLSGRIVVFSVSNHEEDVVTAL 98 (215)
T ss_dssp HHHHHHHHHSCCCSEEEEEECCCCHHHHHHHH
T ss_pred HHHHHHHHHhCCCCcEEEEECCCCHHHHHHHH
Confidence 45566666667889999999988877666555
No 113
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=49.28 E-value=28 Score=25.34 Aligned_cols=28 Identities=21% Similarity=0.290 Sum_probs=17.9
Q ss_pred CceEEEecCCCCh--HHHHh-hhCCCCEEEe
Q psy14926 19 DLKLIVTSATMDA--DKFSN-FFGNVPTFHI 46 (140)
Q Consensus 19 dLklVlMSATld~--~~f~~-yf~~~pvi~i 46 (140)
+.++++||||+.. ..+.+ |+.+.-.+.+
T Consensus 209 ~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~ 239 (253)
T 1wrb_A 209 NRQTLMFSATFPKEIQKLAADFLYNYIFMTV 239 (253)
T ss_dssp GCEEEEEESSCCHHHHHHHHHHCSSCEEEEE
T ss_pred CcEEEEEEEeCCHHHHHHHHHHcCCCEEEEE
Confidence 6789999999975 34554 4443333444
No 114
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=49.09 E-value=48 Score=21.52 Aligned_cols=32 Identities=22% Similarity=0.157 Sum_probs=21.0
Q ss_pred HHHHHHHHHhCCCceEEEecCCCChHHHHhhh
Q psy14926 7 FLIYLQVIARRQDLKLIVTSATMDADKFSNFF 38 (140)
Q Consensus 7 L~llk~~~~~r~dLklVlMSATld~~~f~~yf 38 (140)
+.+++.+....++.++|++|+..+.+...+.+
T Consensus 67 ~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~ 98 (154)
T 2rjn_A 67 EVFLEQVAKSYPDIERVVISGYADAQATIDAV 98 (154)
T ss_dssp HHHHHHHHHHCTTSEEEEEECGGGHHHHHHHH
T ss_pred HHHHHHHHHhCCCCcEEEEecCCCHHHHHHHH
Confidence 34556665566778888888777766555554
No 115
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=48.57 E-value=34 Score=31.54 Aligned_cols=64 Identities=14% Similarity=0.146 Sum_probs=43.9
Q ss_pred eEEEecCCCCh--HHHHhhhCCCCEEEecCCccccc------eeecCCCccchHHHHHHHHHHHhcCCCCCcEEeeCC
Q psy14926 21 KLIVTSATMDA--DKFSNFFGNVPTFHIPGRTFPVD------VFFAKNPVEDYVDSAVKQALQIHLIPNPDQKYPWPC 90 (140)
Q Consensus 21 klVlMSATld~--~~f~~yf~~~pvi~i~G~~~pV~------~~y~~~~~~d~v~~~~~~v~~i~~~~~~GdILVFl~ 90 (140)
|+--|+.|+.+ +.|.+.|+ ..++.||.- .|+. ..|.. ..+...+.+..+.+.|... --|||+-+
T Consensus 380 kLsGMTGTA~tE~~Ef~~iY~-l~Vv~IPTn-~p~~R~D~~d~vy~t--~~~K~~AIv~eI~~~~~~G--qPVLVgT~ 451 (997)
T 2ipc_A 380 KRAGMTGTAKTEEKEFQEIYG-MDVVVVPTN-RPVIRKDFPDVVYRT--EKGKFYAVVEEIAEKYERG--QPVLVGTI 451 (997)
T ss_dssp EEEEEESSCGGGHHHHHHHHC-CCEEECCCS-SCCCCEEEEEEEESS--HHHHHHHHHHHHHHHHHHT--CCEEEECS
T ss_pred HheecCCCchHHHHHHHHHhC-CCEEEcCCC-CCcccccCCCeEEcC--HHHHHHHHHHHHHHHHHCC--CCEEEEeC
Confidence 89999999964 55888886 889999974 3332 22322 3455667788888887654 34999843
No 116
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=48.41 E-value=40 Score=28.08 Aligned_cols=20 Identities=25% Similarity=0.554 Sum_probs=14.4
Q ss_pred ceEEEecCCCCh-HHHHhhhC
Q psy14926 20 LKLIVTSATMDA-DKFSNFFG 39 (140)
Q Consensus 20 LklVlMSATld~-~~f~~yf~ 39 (140)
-.+|+||||+.. +.|.+-+|
T Consensus 316 ~svIltSaTL~~~~~~~~~lG 336 (551)
T 3crv_A 316 LSIILMSGTLPPREYMEKVWG 336 (551)
T ss_dssp CEEEEEESSCCCHHHHHHTSC
T ss_pred ceEEEEeeCCCcHHHHHHHhC
Confidence 579999999975 34555555
No 117
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=48.22 E-value=34 Score=22.00 Aligned_cols=15 Identities=27% Similarity=0.366 Sum_probs=7.9
Q ss_pred ccchHHHHHHHHHHH
Q psy14926 62 VEDYVDSAVKQALQI 76 (140)
Q Consensus 62 ~~d~v~~~~~~v~~i 76 (140)
..+.+..++..+++.
T Consensus 110 ~~~~l~~~i~~~l~~ 124 (140)
T 3h5i_A 110 TEQVLITIVEMALRL 124 (140)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 344555556555554
No 118
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=46.82 E-value=41 Score=21.33 Aligned_cols=30 Identities=10% Similarity=0.215 Sum_probs=19.9
Q ss_pred HHHHHHHHhCC-CceEEEecCCCChHHHHhhh
Q psy14926 8 LIYLQVIARRQ-DLKLIVTSATMDADKFSNFF 38 (140)
Q Consensus 8 ~llk~~~~~r~-dLklVlMSATld~~~f~~yf 38 (140)
.+++.+... + +.++|++|+..+.+...+.+
T Consensus 75 ~~~~~l~~~-~~~~~ii~ls~~~~~~~~~~~~ 105 (137)
T 2pln_A 75 SFVSRIKEK-HSSIVVLVSSDNPTSEEEVHAF 105 (137)
T ss_dssp HHHHHHHHH-STTSEEEEEESSCCHHHHHHHH
T ss_pred HHHHHHHhc-CCCccEEEEeCCCCHHHHHHHH
Confidence 445555445 6 78888888877766666555
No 119
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=46.65 E-value=52 Score=20.68 Aligned_cols=20 Identities=10% Similarity=0.195 Sum_probs=10.2
Q ss_pred CCceEEEecCCCChHHHHhh
Q psy14926 18 QDLKLIVTSATMDADKFSNF 37 (140)
Q Consensus 18 ~dLklVlMSATld~~~f~~y 37 (140)
++.++|+||+.-+.+...+.
T Consensus 80 ~~~pii~~s~~~~~~~~~~~ 99 (129)
T 3h1g_A 80 KEIPIIMITAEGGKAEVITA 99 (129)
T ss_dssp TTCCEEEEESCCSHHHHHHH
T ss_pred CCCeEEEEeCCCChHHHHHH
Confidence 45555555555554444333
No 120
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=46.50 E-value=52 Score=22.93 Aligned_cols=60 Identities=10% Similarity=0.057 Sum_probs=32.1
Q ss_pred HHHHHHHHHhCCCceEEEecCCCChHHHHhhhCCCCEEEecCCccccceeecCCCccchHHHHHHHHHHHh
Q psy14926 7 FLIYLQVIARRQDLKLIVTSATMDADKFSNFFGNVPTFHIPGRTFPVDVFFAKNPVEDYVDSAVKQALQIH 77 (140)
Q Consensus 7 L~llk~~~~~r~dLklVlMSATld~~~f~~yf~~~pvi~i~G~~~pV~~~y~~~~~~d~v~~~~~~v~~i~ 77 (140)
+.+++.+....++.++|++|+.-+.+...+.+. + .+.-+..++...+.+..++..+++-.
T Consensus 62 ~~~~~~lr~~~~~~~ii~ls~~~~~~~~~~~~~-~----------ga~~~l~Kp~~~~~l~~~i~~~~~~~ 121 (225)
T 1kgs_A 62 WEILKSMRESGVNTPVLMLTALSDVEYRVKGLN-M----------GADDYLPKPFDLRELIARVRALIRRK 121 (225)
T ss_dssp HHHHHHHHHTTCCCCEEEEESSCHHHHHHHTCC-C----------CCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCEEEEeCCCCHHHHHHHHh-C----------CccEEEeCCCCHHHHHHHHHHHHhhc
Confidence 345555555567788888887766555555443 1 11111222223455666666666654
No 121
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=44.43 E-value=28 Score=22.21 Aligned_cols=30 Identities=13% Similarity=0.125 Sum_probs=20.2
Q ss_pred HHHHHHHhCCCceEEEecCCCChHHHHhhh
Q psy14926 9 IYLQVIARRQDLKLIVTSATMDADKFSNFF 38 (140)
Q Consensus 9 llk~~~~~r~dLklVlMSATld~~~f~~yf 38 (140)
+++.+....++.++|++|+..+.+...+.+
T Consensus 77 ~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~ 106 (135)
T 3snk_A 77 GIVEARALWATVPLIAVSDELTSEQTRVLV 106 (135)
T ss_dssp THHHHHGGGTTCCEEEEESCCCHHHHHHHH
T ss_pred HHHHHHhhCCCCcEEEEeCCCCHHHHHHHH
Confidence 445555556678888888877766666555
No 122
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=44.06 E-value=46 Score=23.52 Aligned_cols=32 Identities=16% Similarity=0.105 Sum_probs=24.1
Q ss_pred HHHHHHHHH-hCCCceEEEecCCCChHHHHhhh
Q psy14926 7 FLIYLQVIA-RRQDLKLIVTSATMDADKFSNFF 38 (140)
Q Consensus 7 L~llk~~~~-~r~dLklVlMSATld~~~f~~yf 38 (140)
+.+++.+.. ..|+.++|++|+.-+.+.....+
T Consensus 70 ~~~~~~lr~~~~~~~~ii~lt~~~~~~~~~~~~ 102 (225)
T 3klo_A 70 LTDYSSFKHISCPDAKEVIINCPQDIEHKLLFK 102 (225)
T ss_dssp HHHHHHHHHHHCTTCEEEEEEECTTCCHHHHTT
T ss_pred HHHHHHHHHhhCCCCcEEEEECCcchhHHHHHH
Confidence 456677766 68999999999988766655554
No 123
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=44.01 E-value=54 Score=20.12 Aligned_cols=17 Identities=18% Similarity=0.304 Sum_probs=8.5
Q ss_pred CCCceEEEecCCCChHH
Q psy14926 17 RQDLKLIVTSATMDADK 33 (140)
Q Consensus 17 r~dLklVlMSATld~~~ 33 (140)
.++.++|++|+..+.+.
T Consensus 71 ~~~~~ii~~s~~~~~~~ 87 (122)
T 1zgz_A 71 RSTVGIILVTGRSDRID 87 (122)
T ss_dssp TCCCEEEEEESSCCHHH
T ss_pred cCCCCEEEEECCCChhh
Confidence 34555555555554433
No 124
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=49.76 E-value=4.9 Score=28.00 Aligned_cols=47 Identities=11% Similarity=0.010 Sum_probs=27.4
Q ss_pred CCCCcEEeeCC-CceeeccccCCchhhHHHHHHHhhhhhhccCCCCCHHHHhhhccc
Q psy14926 80 PNPDQKYPWPC-FQKVRFGRYSGPKLRYLGLCIEKAQKELALFTTLPLATGRSNFAD 135 (140)
Q Consensus 80 ~~~GdILVFl~-~~ei~~~~~~~~~~~~i~~~~~~~~~~lpLh~~lp~~eQ~~~f~~ 135 (140)
...+.+|||.. ..+.+.. ...+.+ .......+||.++..++++++..
T Consensus 28 ~~~~~~iVF~~~~~~~~~l---~~~L~~------~~~~~~~~~g~~~~~~r~~~~~~ 75 (170)
T 2yjt_D 28 PEATRSIVFVRKRERVHEL---ANWLRE------AGINNCYLEGEMVQGKRNEAIKR 75 (170)
Confidence 34578999944 3333221 122221 12335669999999998877653
No 125
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=43.39 E-value=46 Score=20.58 Aligned_cols=31 Identities=6% Similarity=0.103 Sum_probs=19.0
Q ss_pred HHHHHHHHhC--CCceEEEecCCCChHHHHhhh
Q psy14926 8 LIYLQVIARR--QDLKLIVTSATMDADKFSNFF 38 (140)
Q Consensus 8 ~llk~~~~~r--~dLklVlMSATld~~~f~~yf 38 (140)
.+++.+.... ++.++|++|+..+.+...+.+
T Consensus 63 ~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~ 95 (127)
T 2jba_A 63 QFIKHLRRESMTRDIPVVMLTARGEEEDRVRGL 95 (127)
T ss_dssp HHHHHHHTSTTTTTSCEEEEEETTHHHHHHTTC
T ss_pred HHHHHHHhCcccCCCCEEEEeCCCCHHHHHHHH
Confidence 3455554433 678888888876665555544
No 126
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=43.35 E-value=28 Score=22.23 Aligned_cols=14 Identities=0% Similarity=-0.078 Sum_probs=7.5
Q ss_pred cchHHHHHHHHHHH
Q psy14926 63 EDYVDSAVKQALQI 76 (140)
Q Consensus 63 ~d~v~~~~~~v~~i 76 (140)
.+.+..++..+++.
T Consensus 114 ~~~l~~~i~~~~~~ 127 (142)
T 3cg4_A 114 NEDLIEKTTFFMGF 127 (142)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44455556665554
No 127
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=43.24 E-value=35 Score=23.34 Aligned_cols=33 Identities=6% Similarity=0.073 Sum_probs=24.6
Q ss_pred HHHHHHHHHhCCCceEEEecCCCChHHHHhhhC
Q psy14926 7 FLIYLQVIARRQDLKLIVTSATMDADKFSNFFG 39 (140)
Q Consensus 7 L~llk~~~~~r~dLklVlMSATld~~~f~~yf~ 39 (140)
+.+++.+....++.++|++|+..+.+...+.+.
T Consensus 67 ~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~a~~ 99 (184)
T 3rqi_A 67 LSLIAPLCDLQPDARILVLTGYASIATAVQAVK 99 (184)
T ss_dssp HHHHHHHHHHCTTCEEEEEESSCCHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCEEEEeCCCCHHHHHHHHH
Confidence 345666666778999999999988777666553
No 128
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=42.77 E-value=60 Score=20.26 Aligned_cols=16 Identities=6% Similarity=-0.070 Sum_probs=9.5
Q ss_pred ccchHHHHHHHHHHHh
Q psy14926 62 VEDYVDSAVKQALQIH 77 (140)
Q Consensus 62 ~~d~v~~~~~~v~~i~ 77 (140)
..+.+..++..+++-.
T Consensus 108 ~~~~l~~~i~~~l~~~ 123 (133)
T 3nhm_A 108 KPPVLIAQLHALLARA 123 (133)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhh
Confidence 3455666666666654
No 129
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=42.69 E-value=66 Score=20.76 Aligned_cols=31 Identities=13% Similarity=0.174 Sum_probs=18.8
Q ss_pred HHHHHHHH--hCCCceEEEecCCCChHHHHhhh
Q psy14926 8 LIYLQVIA--RRQDLKLIVTSATMDADKFSNFF 38 (140)
Q Consensus 8 ~llk~~~~--~r~dLklVlMSATld~~~f~~yf 38 (140)
.+++.+.. ..++.++|++|+..+.+...+.+
T Consensus 76 ~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~~~ 108 (152)
T 3heb_A 76 DILKLVKENPHTRRSPVVILTTTDDQREIQRCY 108 (152)
T ss_dssp HHHHHHHHSTTTTTSCEEEEESCCCHHHHHHHH
T ss_pred HHHHHHHhcccccCCCEEEEecCCCHHHHHHHH
Confidence 34555544 45677777777777666555544
No 130
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=42.17 E-value=61 Score=20.17 Aligned_cols=24 Identities=13% Similarity=0.138 Sum_probs=18.2
Q ss_pred HHHHHHHHHhCCCceEEEecCCCC
Q psy14926 7 FLIYLQVIARRQDLKLIVTSATMD 30 (140)
Q Consensus 7 L~llk~~~~~r~dLklVlMSATld 30 (140)
+.+++.+....++.++|++|+..+
T Consensus 62 ~~~~~~l~~~~~~~~ii~~s~~~~ 85 (135)
T 3eqz_A 62 IEVIRHLAEHKSPASLILISGYDS 85 (135)
T ss_dssp HHHHHHHHHTTCCCEEEEEESSCH
T ss_pred HHHHHHHHhCCCCCCEEEEEeccc
Confidence 456666666778899999988776
No 131
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=41.50 E-value=56 Score=20.51 Aligned_cols=12 Identities=8% Similarity=0.105 Sum_probs=5.3
Q ss_pred CCceEEEecCCC
Q psy14926 18 QDLKLIVTSATM 29 (140)
Q Consensus 18 ~dLklVlMSATl 29 (140)
+..++|++|+.-
T Consensus 74 ~~~~ii~~s~~~ 85 (136)
T 1mvo_A 74 LMFPILMLTAKD 85 (136)
T ss_dssp CCCCEEEEECTT
T ss_pred CCCCEEEEECCC
Confidence 444444444433
No 132
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*
Probab=39.16 E-value=69 Score=19.96 Aligned_cols=31 Identities=13% Similarity=0.093 Sum_probs=16.8
Q ss_pred HHHHHHHHh-CCCceEEEecCCCChHHHHhhh
Q psy14926 8 LIYLQVIAR-RQDLKLIVTSATMDADKFSNFF 38 (140)
Q Consensus 8 ~llk~~~~~-r~dLklVlMSATld~~~f~~yf 38 (140)
.+++.+... .+..++|++|+.-+.+...+.+
T Consensus 65 ~~~~~l~~~~~~~~~ii~ls~~~~~~~~~~~~ 96 (130)
T 1dz3_A 65 AVLERIRAGFEHQPNVIMLTAFGQEDVTKKAV 96 (130)
T ss_dssp HHHHHHHHHCSSCCEEEEEEETTCHHHHHHHH
T ss_pred HHHHHHHhcCCCCCcEEEEecCCCHHHHHHHH
Confidence 344444443 4566677777766655544444
No 133
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=39.07 E-value=68 Score=19.83 Aligned_cols=20 Identities=10% Similarity=0.215 Sum_probs=9.7
Q ss_pred CCceEEEecCCCChHHHHhh
Q psy14926 18 QDLKLIVTSATMDADKFSNF 37 (140)
Q Consensus 18 ~dLklVlMSATld~~~f~~y 37 (140)
++.++|++|+..+.+...+.
T Consensus 78 ~~~~ii~~s~~~~~~~~~~~ 97 (128)
T 1jbe_A 78 SALPVLMVTAEAKKENIIAA 97 (128)
T ss_dssp TTCCEEEEESSCCHHHHHHH
T ss_pred CCCcEEEEecCccHHHHHHH
Confidence 44555555555544443333
No 134
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=38.73 E-value=36 Score=21.31 Aligned_cols=29 Identities=10% Similarity=0.027 Sum_probs=15.7
Q ss_pred HHHHHHHHhCCCceEEEecCCCChHHHHh
Q psy14926 8 LIYLQVIARRQDLKLIVTSATMDADKFSN 36 (140)
Q Consensus 8 ~llk~~~~~r~dLklVlMSATld~~~f~~ 36 (140)
.+++++....++.++|++|+..+.+...+
T Consensus 68 ~~~~~l~~~~~~~~ii~~s~~~~~~~~~~ 96 (132)
T 2rdm_A 68 QVARVAREIDPNMPIVYISGHAALEWASN 96 (132)
T ss_dssp HHHHHHHHHCTTCCEEEEESSCCTTHHHH
T ss_pred HHHHHHHhcCCCCCEEEEeCCccHHHHHh
Confidence 34454444456666666666655444433
No 135
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=38.71 E-value=73 Score=20.09 Aligned_cols=31 Identities=6% Similarity=-0.034 Sum_probs=20.2
Q ss_pred HHHHHHHH----hCCCceEEEecCCCChHHHHhhh
Q psy14926 8 LIYLQVIA----RRQDLKLIVTSATMDADKFSNFF 38 (140)
Q Consensus 8 ~llk~~~~----~r~dLklVlMSATld~~~f~~yf 38 (140)
.+++.+.. ..++.++|++|+..+.+...+.+
T Consensus 77 ~~~~~l~~~~~~~~~~~~ii~~t~~~~~~~~~~~~ 111 (146)
T 3ilh_A 77 ELIDLFKQHFQPMKNKSIVCLLSSSLDPRDQAKAE 111 (146)
T ss_dssp HHHHHHHHHCGGGTTTCEEEEECSSCCHHHHHHHH
T ss_pred HHHHHHHHhhhhccCCCeEEEEeCCCChHHHHHHH
Confidence 45555555 45778888888877766665554
No 136
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=38.47 E-value=35 Score=21.77 Aligned_cols=13 Identities=15% Similarity=0.299 Sum_probs=5.3
Q ss_pred CCceEEEecCCCC
Q psy14926 18 QDLKLIVTSATMD 30 (140)
Q Consensus 18 ~dLklVlMSATld 30 (140)
++.++|++|+..+
T Consensus 75 ~~~~ii~~s~~~~ 87 (140)
T 3n53_A 75 KNVPLILLFSSEH 87 (140)
T ss_dssp TTCCEEEEECC--
T ss_pred CCCCEEEEecCCC
Confidence 4444555544433
No 137
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=38.19 E-value=71 Score=19.77 Aligned_cols=16 Identities=19% Similarity=0.216 Sum_probs=7.8
Q ss_pred CCceEEEecCCCChHH
Q psy14926 18 QDLKLIVTSATMDADK 33 (140)
Q Consensus 18 ~dLklVlMSATld~~~ 33 (140)
++.++|++|+..+.+.
T Consensus 80 ~~~~ii~~s~~~~~~~ 95 (129)
T 1p6q_A 80 KKAAFIILTAQGDRAL 95 (129)
T ss_dssp TTCEEEECCSCCCHHH
T ss_pred cCCCEEEEeCCCCHHH
Confidence 4455555555544433
No 138
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=37.15 E-value=75 Score=19.76 Aligned_cols=31 Identities=13% Similarity=0.134 Sum_probs=16.7
Q ss_pred HHHHHHHHh--CCCceEEEecCCCChHHHHhhh
Q psy14926 8 LIYLQVIAR--RQDLKLIVTSATMDADKFSNFF 38 (140)
Q Consensus 8 ~llk~~~~~--r~dLklVlMSATld~~~f~~yf 38 (140)
.+++++... .++.++|++|+.-+.+.....+
T Consensus 63 ~~~~~l~~~~~~~~~pii~~s~~~~~~~~~~~~ 95 (122)
T 3gl9_A 63 TVLKKLQEKEEWKRIPVIVLTAKGGEEDESLAL 95 (122)
T ss_dssp HHHHHHHTSTTTTTSCEEEEESCCSHHHHHHHH
T ss_pred HHHHHHHhcccccCCCEEEEecCCchHHHHHHH
Confidence 344444332 3566777777766655544443
No 139
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=37.06 E-value=74 Score=20.13 Aligned_cols=30 Identities=7% Similarity=0.006 Sum_probs=14.9
Q ss_pred HHHHHHH-hCCCceEEEecCCCChHHHHhhh
Q psy14926 9 IYLQVIA-RRQDLKLIVTSATMDADKFSNFF 38 (140)
Q Consensus 9 llk~~~~-~r~dLklVlMSATld~~~f~~yf 38 (140)
+++.+.. ..++.++|++|+..+.+...+.+
T Consensus 70 ~~~~lr~~~~~~~~ii~lt~~~~~~~~~~~~ 100 (133)
T 2r25_B 70 STKMIRRDLGYTSPIVALTAFADDSNIKECL 100 (133)
T ss_dssp HHHHHHHHSCCCSCEEEEESCCSHHHHHHHH
T ss_pred HHHHHHhhcCCCCCEEEEECCCCHHHHHHHH
Confidence 3444433 23455666666666554444433
No 140
>2kqs_B Death domain-associated protein 6; SUMO, SIM, DAXX, nucleus, phosphoprotein, UBL conjugation PA apoptosis, transcription, transcription regulation; NMR {Homo sapiens}
Probab=36.09 E-value=12 Score=18.85 Aligned_cols=13 Identities=23% Similarity=0.263 Sum_probs=10.3
Q ss_pred hCCCceEEEecCC
Q psy14926 16 RRQDLKLIVTSAT 28 (140)
Q Consensus 16 ~r~dLklVlMSAT 28 (140)
....+++++|||.
T Consensus 9 qcdP~evivlsds 21 (26)
T 2kqs_B 9 QCDPEEIIVLSDS 21 (26)
T ss_pred cCCcceEEEcccc
Confidence 4467899999985
No 141
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=36.07 E-value=87 Score=20.19 Aligned_cols=31 Identities=6% Similarity=0.218 Sum_probs=17.3
Q ss_pred HHHHHHHHh--CCCceEEEecCCCChHHHHhhh
Q psy14926 8 LIYLQVIAR--RQDLKLIVTSATMDADKFSNFF 38 (140)
Q Consensus 8 ~llk~~~~~--r~dLklVlMSATld~~~f~~yf 38 (140)
.+++.+... .++.++|++|+.-+.+...+.+
T Consensus 78 ~l~~~l~~~~~~~~~piiils~~~~~~~~~~~~ 110 (149)
T 1i3c_A 78 EVLAEIKQNPDLKRIPVVVLTTSHNEDDVIASY 110 (149)
T ss_dssp HHHHHHHHCTTTTTSCEEEEESCCCHHHHHHHH
T ss_pred HHHHHHHhCcCcCCCeEEEEECCCChHHHHHHH
Confidence 344444332 2567777777776655555544
No 142
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=34.66 E-value=77 Score=19.16 Aligned_cols=21 Identities=19% Similarity=0.319 Sum_probs=10.2
Q ss_pred HHHHHHHhCCCceEEEecCCC
Q psy14926 9 IYLQVIARRQDLKLIVTSATM 29 (140)
Q Consensus 9 llk~~~~~r~dLklVlMSATl 29 (140)
+++.+.+..++.++|++|+..
T Consensus 63 ~~~~l~~~~~~~~ii~~s~~~ 83 (116)
T 3a10_A 63 VAGEIRKKKKDAKIILLTAYS 83 (116)
T ss_dssp HHHHHHHHCTTCCEEEEESCG
T ss_pred HHHHHHccCCCCeEEEEECCc
Confidence 334443344555555555543
No 143
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=34.63 E-value=59 Score=22.76 Aligned_cols=16 Identities=25% Similarity=0.125 Sum_probs=8.9
Q ss_pred ccchHHHHHHHHHHHh
Q psy14926 62 VEDYVDSAVKQALQIH 77 (140)
Q Consensus 62 ~~d~v~~~~~~v~~i~ 77 (140)
..+.+..++..+++-.
T Consensus 111 ~~~~L~~~i~~~~~~~ 126 (233)
T 1ys7_A 111 VLAELVARVKALLRRR 126 (233)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhc
Confidence 3445556666666543
No 144
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=34.52 E-value=78 Score=19.18 Aligned_cols=18 Identities=22% Similarity=0.202 Sum_probs=9.6
Q ss_pred CCCceEEEecCCCChHHH
Q psy14926 17 RQDLKLIVTSATMDADKF 34 (140)
Q Consensus 17 r~dLklVlMSATld~~~f 34 (140)
.++.++|++|+..+.+..
T Consensus 70 ~~~~~ii~~s~~~~~~~~ 87 (121)
T 1zh2_A 70 WSAVPVIVLSARSEESDK 87 (121)
T ss_dssp TCCCCEEEEESCCSHHHH
T ss_pred CCCCcEEEEECCCCHHHH
Confidence 455566666655554433
No 145
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=33.68 E-value=37 Score=30.98 Aligned_cols=15 Identities=13% Similarity=0.085 Sum_probs=10.9
Q ss_pred CCceEEEecCCCChH
Q psy14926 18 QDLKLIVTSATMDAD 32 (140)
Q Consensus 18 ~dLklVlMSATld~~ 32 (140)
++.+++++|||+...
T Consensus 214 ~~~q~~l~SAT~t~~ 228 (1054)
T 1gku_B 214 GEARGCLMVSTATAK 228 (1054)
T ss_dssp ECCSSEEEECCCCSC
T ss_pred cCCceEEEEecCCCc
Confidence 345688899998654
No 146
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=33.50 E-value=88 Score=22.64 Aligned_cols=31 Identities=13% Similarity=0.098 Sum_probs=22.1
Q ss_pred HHHHHHHHHhCCCceEEEecCCCChHHHHhhh
Q psy14926 7 FLIYLQVIARRQDLKLIVTSATMDADKFSNFF 38 (140)
Q Consensus 7 L~llk~~~~~r~dLklVlMSATld~~~f~~yf 38 (140)
+.+++++.. .++.++|++|+.-+.+...+.+
T Consensus 97 ~~l~~~lr~-~~~~~iI~lt~~~~~~~~~~a~ 127 (249)
T 3q9s_A 97 GDVVQRLRK-NSALPIIVLTARDTVEEKVRLL 127 (249)
T ss_dssp HHHHHHHHT-TCCCCEEEEESCCSHHHHHHHH
T ss_pred HHHHHHHHc-CCCCCEEEEECCCCHHHHHHHH
Confidence 445566544 6788999999988877766655
No 147
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=33.38 E-value=93 Score=19.72 Aligned_cols=19 Identities=5% Similarity=0.044 Sum_probs=9.5
Q ss_pred CceEEEecCCCChHHHHhh
Q psy14926 19 DLKLIVTSATMDADKFSNF 37 (140)
Q Consensus 19 dLklVlMSATld~~~f~~y 37 (140)
+.++|++|+.-+.+...+.
T Consensus 75 ~~~ii~ls~~~~~~~~~~~ 93 (136)
T 2qzj_A 75 TCPIVYMTYINEDQSILNA 93 (136)
T ss_dssp CCCEEEEESCCCHHHHHHH
T ss_pred CCCEEEEEcCCCHHHHHHH
Confidence 4555555555554443333
No 148
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=33.35 E-value=60 Score=22.70 Aligned_cols=45 Identities=2% Similarity=-0.084 Sum_probs=19.2
Q ss_pred CCCcEEeeCCC-ceeeccccCCchhhHHHHHH-HhhhhhhccCCCCCHHHHhhhccc
Q psy14926 81 NPDQKYPWPCF-QKVRFGRYSGPKLRYLGLCI-EKAQKELALFTTLPLATGRSNFAD 135 (140)
Q Consensus 81 ~~GdILVFl~~-~ei~~~~~~~~~~~~i~~~~-~~~~~~lpLh~~lp~~eQ~~~f~~ 135 (140)
..+.+|||... +.... +.... ........+||.++..++++++..
T Consensus 45 ~~~k~lVF~~~~~~~~~----------l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~ 91 (185)
T 2jgn_A 45 KDSLTLVFVETKKGADS----------LEDFLYHEGYACTSIHGDRSQRDREEALHQ 91 (185)
T ss_dssp CCSCEEEEESCHHHHHH----------HHHHHHHTTCCEEEEC--------CHHHHH
T ss_pred CCCeEEEEECCHHHHHH----------HHHHHHHcCCceEEEeCCCCHHHHHHHHHH
Confidence 46789999543 33211 11111 122345679999999998887643
No 149
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=32.93 E-value=95 Score=22.56 Aligned_cols=30 Identities=13% Similarity=0.078 Sum_probs=15.9
Q ss_pred HHHHHHHhCCCceEEEecCCCChHHHHhhh
Q psy14926 9 IYLQVIARRQDLKLIVTSATMDADKFSNFF 38 (140)
Q Consensus 9 llk~~~~~r~dLklVlMSATld~~~f~~yf 38 (140)
+++++....+++++|++|+..+.+...+.+
T Consensus 191 l~~~ir~~~~~~piI~lt~~~~~~~~~~~~ 220 (254)
T 2ayx_A 191 LTQRIRQLGLTLPVIGVTANALAEEKQRCL 220 (254)
T ss_dssp HHHHHHHHHCCSCEEEEESSTTSHHHHHHH
T ss_pred HHHHHHhcCCCCcEEEEECCCCHHHHHHHH
Confidence 344444444566666666665554444443
No 150
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=32.57 E-value=1e+02 Score=19.99 Aligned_cols=31 Identities=6% Similarity=0.083 Sum_probs=17.8
Q ss_pred HHHHHHHHh--CCCceEEEecCCCChHHHHhhh
Q psy14926 8 LIYLQVIAR--RQDLKLIVTSATMDADKFSNFF 38 (140)
Q Consensus 8 ~llk~~~~~--r~dLklVlMSATld~~~f~~yf 38 (140)
.+++.+... .+++++|++|+..+.+...+.+
T Consensus 68 ~~~~~lr~~~~~~~~pii~~s~~~~~~~~~~~~ 100 (154)
T 3gt7_A 68 ALCRWLKGQPDLRTIPVILLTILSDPRDVVRSL 100 (154)
T ss_dssp HHHHHHHHSTTTTTSCEEEEECCCSHHHHHHHH
T ss_pred HHHHHHHhCCCcCCCCEEEEECCCChHHHHHHH
Confidence 344444332 2567777777776666555554
No 151
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=31.21 E-value=63 Score=22.21 Aligned_cols=25 Identities=16% Similarity=0.150 Sum_probs=14.8
Q ss_pred HHHHHHHHhCCCceEEEecCCCChH
Q psy14926 8 LIYLQVIARRQDLKLIVTSATMDAD 32 (140)
Q Consensus 8 ~llk~~~~~r~dLklVlMSATld~~ 32 (140)
.+++.+....++.++|++|+.-+.+
T Consensus 65 ~~~~~l~~~~~~~~ii~ls~~~~~~ 89 (208)
T 1yio_A 65 ELQEQLTAISDGIPIVFITAHGDIP 89 (208)
T ss_dssp HHHHHHHHTTCCCCEEEEESCTTSC
T ss_pred HHHHHHHhcCCCCCEEEEeCCCCHH
Confidence 4455554555677777777765543
No 152
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=31.18 E-value=84 Score=21.05 Aligned_cols=31 Identities=10% Similarity=0.134 Sum_probs=21.9
Q ss_pred HHHHHHHH--hCCCceEEEecCCCChHHHHhhh
Q psy14926 8 LIYLQVIA--RRQDLKLIVTSATMDADKFSNFF 38 (140)
Q Consensus 8 ~llk~~~~--~r~dLklVlMSATld~~~f~~yf 38 (140)
.+++++.+ ..+++.||++||..+.+...+.+
T Consensus 74 el~~~ir~~~~~~~ipvI~lTa~~~~~~~~~~~ 106 (134)
T 3to5_A 74 DLLKNIRADEELKHLPVLMITAEAKREQIIEAA 106 (134)
T ss_dssp HHHHHHHHSTTTTTCCEEEEESSCCHHHHHHHH
T ss_pred HHHHHHHhCCCCCCCeEEEEECCCCHHHHHHHH
Confidence 45566544 34778899999988877766655
No 153
>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HU; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B
Probab=30.59 E-value=70 Score=20.28 Aligned_cols=28 Identities=14% Similarity=0.128 Sum_probs=15.0
Q ss_pred HHHHHHHHhCCCceEEEecCCCChHHHH
Q psy14926 8 LIYLQVIARRQDLKLIVTSATMDADKFS 35 (140)
Q Consensus 8 ~llk~~~~~r~dLklVlMSATld~~~f~ 35 (140)
.+++.+....++.++|++|+..+.+...
T Consensus 61 ~~~~~l~~~~~~~~ii~~s~~~~~~~~~ 88 (139)
T 2jk1_A 61 DFLTEVRERWPETVRIIITGYTDSASMM 88 (139)
T ss_dssp HHHHHHHHHCTTSEEEEEESCTTCHHHH
T ss_pred HHHHHHHHhCCCCcEEEEeCCCChHHHH
Confidence 3444444445666666666665544433
No 154
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=30.58 E-value=56 Score=23.12 Aligned_cols=32 Identities=9% Similarity=0.264 Sum_probs=22.5
Q ss_pred HHHHHHHHHhCCCceEEEecCCCChHHHHhhh
Q psy14926 7 FLIYLQVIARRQDLKLIVTSATMDADKFSNFF 38 (140)
Q Consensus 7 L~llk~~~~~r~dLklVlMSATld~~~f~~yf 38 (140)
+.+++.+....|+.++|++|+..+.+...+.+
T Consensus 63 ~~~~~~lr~~~~~~~ii~lt~~~~~~~~~~~~ 94 (225)
T 3c3w_A 63 IELCRDLLSRMPDLRCLILTSYTSDEAMLDAI 94 (225)
T ss_dssp HHHHHHHHHHCTTCEEEEGGGSSSHHHHHHHH
T ss_pred HHHHHHHHHhCCCCcEEEEECCCCHHHHHHHH
Confidence 34566666667888888888887766655544
No 155
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8
Probab=30.18 E-value=1.1e+02 Score=20.74 Aligned_cols=37 Identities=5% Similarity=-0.061 Sum_probs=22.5
Q ss_pred hHHHHHHHHHHH--HhCCCceEEEecCCC--ChHHHHhhhC
Q psy14926 3 TADFFLIYLQVI--ARRQDLKLIVTSATM--DADKFSNFFG 39 (140)
Q Consensus 3 tDllL~llk~~~--~~r~dLklVlMSATl--d~~~f~~yf~ 39 (140)
.|.++..++.+. ...+++++++....- ..+.+.++..
T Consensus 52 ~~~li~a~~~l~~~~~~~~~~l~i~G~~~~~~~~~l~~~~~ 92 (200)
T 2bfw_A 52 VDVLLKAIEILSSKKEFQEMRFIIIGKGDPELEGWARSLEE 92 (200)
T ss_dssp HHHHHHHHHHHTTSGGGGGEEEEEECCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccCCCeEEEEECCCChHHHHHHHHHHH
Confidence 456666666665 555788888876544 3445555543
No 156
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=30.08 E-value=1.4e+02 Score=23.48 Aligned_cols=31 Identities=13% Similarity=0.012 Sum_probs=22.5
Q ss_pred HHHHHHHHhCCCceEEEecCCCChHHHHhhh
Q psy14926 8 LIYLQVIARRQDLKLIVTSATMDADKFSNFF 38 (140)
Q Consensus 8 ~llk~~~~~r~dLklVlMSATld~~~f~~yf 38 (140)
.+++++....++.++|+||+.-+.+...+.+
T Consensus 61 ell~~lr~~~~~~pvI~lT~~~~~~~~~~a~ 91 (368)
T 3dzd_A 61 NFIDFIKENSPDSVVIVITGHGSVDTAVKAI 91 (368)
T ss_dssp THHHHHHHHCTTCEEEEEECSSCCHHHHHHH
T ss_pred HHHHHHHhhCCCCeEEEEeCCCCHHHHHHHH
Confidence 3566666677899999999988766555444
No 157
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=29.35 E-value=1.3e+02 Score=20.83 Aligned_cols=31 Identities=10% Similarity=0.230 Sum_probs=21.8
Q ss_pred HHHHHHHHHhCC-CceEEEecCCCChHHHHhhh
Q psy14926 7 FLIYLQVIARRQ-DLKLIVTSATMDADKFSNFF 38 (140)
Q Consensus 7 L~llk~~~~~r~-dLklVlMSATld~~~f~~yf 38 (140)
+.+++.+... + +.++|++|+.-+.+...+.+
T Consensus 56 ~~~~~~lr~~-~~~~~ii~lt~~~~~~~~~~~~ 87 (223)
T 2hqr_A 56 LSFVSRIKEK-HSSIVVLVSSDNPTSEEEVHAF 87 (223)
T ss_dssp HHHHHHHHHH-CTTSEEEEEESSCCHHHHHHHH
T ss_pred HHHHHHHHhC-CCCCcEEEEECCCCHHHHHHHH
Confidence 3455665555 6 89999999988877666555
No 158
>1dc7_A NTRC, nitrogen regulation protein; receiver domain, phosphorylation, signal transduction, conformational rearrangement; NMR {Salmonella typhimurium} SCOP: c.23.1.1 PDB: 1j56_A 1krw_A 1krx_A 1ntr_A 1dc8_A*
Probab=28.44 E-value=33 Score=21.06 Aligned_cols=13 Identities=23% Similarity=0.291 Sum_probs=5.9
Q ss_pred CCCceEEEecCCC
Q psy14926 17 RQDLKLIVTSATM 29 (140)
Q Consensus 17 r~dLklVlMSATl 29 (140)
.++.++|++|+..
T Consensus 73 ~~~~~ii~~s~~~ 85 (124)
T 1dc7_A 73 HPMLPVIIMTAHS 85 (124)
T ss_dssp CTTSCCCCBCCST
T ss_pred CCCCCEEEEecCC
Confidence 3444444444433
No 159
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=27.05 E-value=1.5e+02 Score=23.31 Aligned_cols=33 Identities=12% Similarity=0.090 Sum_probs=24.9
Q ss_pred HHHHHHHHHhCCCceEEEecCCCChHHHHhhhC
Q psy14926 7 FLIYLQVIARRQDLKLIVTSATMDADKFSNFFG 39 (140)
Q Consensus 7 L~llk~~~~~r~dLklVlMSATld~~~f~~yf~ 39 (140)
+.+++.+....+++++|+||+..+.+...+.+.
T Consensus 60 ~ell~~lr~~~~~~pvIvlT~~~~~~~~~~a~~ 92 (387)
T 1ny5_A 60 LEILKWIKERSPETEVIVITGHGTIKTAVEAMK 92 (387)
T ss_dssp HHHHHHHHHHCTTSEEEEEEETTCHHHHHHHHT
T ss_pred HHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHh
Confidence 356677666778999999999988777666553
No 160
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=26.40 E-value=1.7e+02 Score=21.37 Aligned_cols=31 Identities=16% Similarity=0.144 Sum_probs=17.2
Q ss_pred HHHHHHHHhC--CCceEEEecCCCChHHHHhhh
Q psy14926 8 LIYLQVIARR--QDLKLIVTSATMDADKFSNFF 38 (140)
Q Consensus 8 ~llk~~~~~r--~dLklVlMSATld~~~f~~yf 38 (140)
.+++++.... .++.+|++|+.-+.+.-.+.+
T Consensus 186 ~l~~~lr~~~~~~~~~ii~~s~~~~~~~~~~a~ 218 (259)
T 3luf_A 186 SLVRMLRERYSKQQLAIIGISVSDKRGLSARYL 218 (259)
T ss_dssp HHHHHHHHHCCTTTSEEEEEECSSSSSHHHHHH
T ss_pred HHHHHHHhccCCCCCeEEEEEccCCHHHHHHHH
Confidence 4455554433 356677777776655554444
No 161
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=24.39 E-value=1.2e+02 Score=18.18 Aligned_cols=14 Identities=14% Similarity=0.240 Sum_probs=6.4
Q ss_pred CCceEEEecCCCCh
Q psy14926 18 QDLKLIVTSATMDA 31 (140)
Q Consensus 18 ~dLklVlMSATld~ 31 (140)
++.++|++|+..+.
T Consensus 71 ~~~~ii~~s~~~~~ 84 (120)
T 2a9o_A 71 SSVPILMLSAKDSE 84 (120)
T ss_dssp CCCCEEEEESCCSH
T ss_pred CCCCEEEEecCCch
Confidence 34445555444443
No 162
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=24.31 E-value=92 Score=19.60 Aligned_cols=21 Identities=19% Similarity=0.278 Sum_probs=10.7
Q ss_pred CCceEEEecCCCChHHHHhhh
Q psy14926 18 QDLKLIVTSATMDADKFSNFF 38 (140)
Q Consensus 18 ~dLklVlMSATld~~~f~~yf 38 (140)
+++++|++|+..+.+...+.+
T Consensus 88 ~~~~ii~ls~~~~~~~~~~~~ 108 (143)
T 2qvg_A 88 TDIEVFVLTAAYTSKDKLAFE 108 (143)
T ss_dssp TTCEEEEEESCCCHHHHHHHT
T ss_pred cCCcEEEEeCCCCHHHHHHHH
Confidence 455555555555544444443
No 163
>2h3g_X Biosynthetic protein; pantothenate kinase, anthrax, type III pantothenate kinase, COAX, COAA, askha; 2.00A {Bacillus anthracis str}
Probab=23.38 E-value=2.4e+02 Score=21.28 Aligned_cols=80 Identities=15% Similarity=0.233 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHhC----CCceEEEecCCCC------hHHHHhhhCCCCEEEecCCccccceeecCCCc--cchHHHHHH
Q psy14926 4 ADFFLIYLQVIARR----QDLKLIVTSATMD------ADKFSNFFGNVPTFHIPGRTFPVDVFFAKNPV--EDYVDSAVK 71 (140)
Q Consensus 4 DllL~llk~~~~~r----~dLklVlMSATld------~~~f~~yf~~~pvi~i~G~~~pV~~~y~~~~~--~d~v~~~~~ 71 (140)
|-+...+++++... ++++=|++|.... ...+.+||+-.|++--++...++++.|.++.. .|.+..++.
T Consensus 37 de~~~~l~~ll~~~~~~~~~i~~iiISSVvp~~~~~l~~~~~~~~~~~~~~v~~~~~~gl~~~y~~P~~lG~DR~~~~va 116 (268)
T 2h3g_X 37 DEYGMLVKQLLEHEGLSFEDVKGIIVSSVVPPIMFALERMCEKYFKIKPLVVGPGIKTGLNIKYENPREVGADRIVNAVA 116 (268)
T ss_dssp HHHHHHHHHHHHHTTCCGGGCCEEEEEESCHHHHHHHHHHHHHHTCCCCEECSTTCCCCCEECSSCGGGSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCcccCcEEEEEccChhHHHHHHHHHHHHhCCCeEEEcCCCCCCccccCCChhhcCHHHHHHHHH
Confidence 44556667666532 2455555555543 12246788766666667778899999965322 344433332
Q ss_pred HHHHHhcCCCCCcEEee
Q psy14926 72 QALQIHLIPNPDQKYPW 88 (140)
Q Consensus 72 ~v~~i~~~~~~GdILVF 88 (140)
+.+.. +++++|.
T Consensus 117 -A~~~~----~~~~iVV 128 (268)
T 2h3g_X 117 -GIHLY----GSPLIIV 128 (268)
T ss_dssp -HHHHH----CSSEEEE
T ss_pred -HHHhc----CCCEEEE
Confidence 22222 3667776
No 164
>2izy_A CAMP-dependent protein kinase regulatory subunit II; D/D, RII, PKA, acetylation, transferase, CAMP- binding, phosphorylation, nucleotide-binding; 2.2A {Mus musculus} SCOP: a.31.1.1 PDB: 1l6e_A 1r2a_A 2drn_A 2h9r_A
Probab=22.46 E-value=1.1e+02 Score=17.57 Aligned_cols=27 Identities=19% Similarity=0.288 Sum_probs=20.2
Q ss_pred hHHHHHHHHHHHHhCCCceEEEecCCCChHHHH-hhhC
Q psy14926 3 TADFFLIYLQVIARRQDLKLIVTSATMDADKFS-NFFG 39 (140)
Q Consensus 3 tDllL~llk~~~~~r~dLklVlMSATld~~~f~-~yf~ 39 (140)
.++|-.+.++++..+|+ |.-.|+ +||+
T Consensus 11 ~~lL~~f~~evlr~qP~----------Di~~Faa~YF~ 38 (54)
T 2izy_A 11 TELLQGYTVEVLRQQPP----------DLVDFAVEYFT 38 (54)
T ss_dssp HHHHHHHHHHHHHHCCS----------CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCC----------CHHHHHHHHHH
Confidence 46788888999888888 666665 5664
No 165
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=22.43 E-value=81 Score=19.45 Aligned_cols=13 Identities=15% Similarity=0.207 Sum_probs=5.5
Q ss_pred CCCceEEEecCCC
Q psy14926 17 RQDLKLIVTSATM 29 (140)
Q Consensus 17 r~dLklVlMSATl 29 (140)
.++.++|++|+..
T Consensus 75 ~~~~~ii~~s~~~ 87 (127)
T 3i42_A 75 EKTSKFVAVSGFA 87 (127)
T ss_dssp SSCCEEEEEECC-
T ss_pred cCCCCEEEEECCc
Confidence 3444444444443
No 166
>4ae5_A Signal transduction protein trap; signaling protein, phosphorylation, RNAIII, quorum SENS biofilm, toxin production; 1.85A {Staphylococcus aureus}
Probab=22.28 E-value=16 Score=26.39 Aligned_cols=23 Identities=17% Similarity=0.031 Sum_probs=19.8
Q ss_pred HHHHHHHHhCCCceEEEecCCCC
Q psy14926 8 LIYLQVIARRQDLKLIVTSATMD 30 (140)
Q Consensus 8 ~llk~~~~~r~dLklVlMSATld 30 (140)
.+|++++.+.|+=++++|+|.-+
T Consensus 12 ~~L~~I~~~~~~r~l~l~~~~d~ 34 (167)
T 4ae5_A 12 GFLHQIKINNPTHQLFQFSASDT 34 (167)
T ss_dssp HHHHHHHHHCTTSCCEEEECSSS
T ss_pred HHHHHHHHHCCCCceEEEEcCCc
Confidence 57888989999999999999843
No 167
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=22.26 E-value=1.4e+02 Score=18.09 Aligned_cols=13 Identities=8% Similarity=0.250 Sum_probs=5.5
Q ss_pred CCceEEEecCCCC
Q psy14926 18 QDLKLIVTSATMD 30 (140)
Q Consensus 18 ~dLklVlMSATld 30 (140)
++.++|++|+.-+
T Consensus 73 ~~~~ii~~s~~~~ 85 (123)
T 1xhf_A 73 ANVALMFLTGRDN 85 (123)
T ss_dssp CCCEEEEEESCCS
T ss_pred CCCcEEEEECCCC
Confidence 3444444444433
No 168
>2kyg_A CAMP-dependent protein kinase type II-alpha regul subunit; protein/protein, homodimer bound to monomer, protein binding; NMR {Homo sapiens}
Probab=21.42 E-value=1.2e+02 Score=17.02 Aligned_cols=27 Identities=19% Similarity=0.297 Sum_probs=20.0
Q ss_pred hHHHHHHHHHHHHhCCCceEEEecCCCChHHHH-hhhC
Q psy14926 3 TADFFLIYLQVIARRQDLKLIVTSATMDADKFS-NFFG 39 (140)
Q Consensus 3 tDllL~llk~~~~~r~dLklVlMSATld~~~f~-~yf~ 39 (140)
.++|-.+.++++..+|+ |.-.|+ +||+
T Consensus 16 ~~lL~~~~~evlr~qP~----------Di~~Faa~yF~ 43 (50)
T 2kyg_A 16 TELLQGYTVEVLRQQPP----------DLVEFAVEYFT 43 (50)
T ss_dssp HHHHHHHHHHHHHHCCS----------CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCC----------CHHHHHHHHHH
Confidence 46788888999888887 666665 4664
No 169
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=21.12 E-value=1.3e+02 Score=20.93 Aligned_cols=22 Identities=9% Similarity=0.061 Sum_probs=13.5
Q ss_pred CCCceEEEecCCC-ChHHHHhhh
Q psy14926 17 RQDLKLIVTSATM-DADKFSNFF 38 (140)
Q Consensus 17 r~dLklVlMSATl-d~~~f~~yf 38 (140)
.+++++|+||+.. +.+...+.+
T Consensus 149 ~~~~piI~ls~~~~~~~~~~~~~ 171 (206)
T 3mm4_A 149 GVRTPIIAVSGHDPGSEEARETI 171 (206)
T ss_dssp TCCCCEEEEESSCCCHHHHHHHH
T ss_pred CCCCcEEEEECCCCcHHHHHHHH
Confidence 4677777777766 544444443
No 170
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=20.79 E-value=1.7e+02 Score=18.42 Aligned_cols=20 Identities=15% Similarity=0.079 Sum_probs=11.1
Q ss_pred CCceEEEecCCCChHHHHhh
Q psy14926 18 QDLKLIVTSATMDADKFSNF 37 (140)
Q Consensus 18 ~dLklVlMSATld~~~f~~y 37 (140)
+++.+|++|+.-+.+...+.
T Consensus 77 ~~~pii~~t~~~~~~~~~~~ 96 (136)
T 3t6k_A 77 KTLPILMLTAQGDISAKIAG 96 (136)
T ss_dssp TTCCEEEEECTTCHHHHHHH
T ss_pred CCccEEEEecCCCHHHHHHH
Confidence 45666666666555544443
No 171
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=20.77 E-value=49 Score=24.53 Aligned_cols=14 Identities=7% Similarity=-0.038 Sum_probs=11.9
Q ss_pred CCCceEEEecCCCC
Q psy14926 17 RQDLKLIVTSATMD 30 (140)
Q Consensus 17 r~dLklVlMSATld 30 (140)
+++.+++.||||..
T Consensus 250 ~~~~~~l~lSATp~ 263 (282)
T 1rif_A 250 NNCMFKFGLSGSLR 263 (282)
T ss_dssp TTCCEEEEECSSCC
T ss_pred hcCCeEEEEeCCCC
Confidence 46889999999984
Done!