RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14926
         (140 letters)



>d1aym1_ b.121.4.1 (1:) Rhinovirus coat proteins {Human rhinovirus
          16, (HRV-16) [TaxId: 31708]}
          Length = 285

 Score = 25.6 bits (56), Expect = 2.3
 Identities = 8/17 (47%), Positives = 11/17 (64%)

Query: 60 NPVEDYVDSAVKQALQI 76
          NPVE YVD  + + L +
Sbjct: 1  NPVERYVDEVLNEVLVV 17


>d2bvca1 d.15.9.1 (A:5-104) Glutamine synthetase, N-terminal
          domain {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 100

 Score = 24.5 bits (53), Expect = 2.7
 Identities = 11/60 (18%), Positives = 21/60 (35%), Gaps = 4/60 (6%)

Query: 33 KFSNFFGNVPTFHIPGRTFPVDVFFAKNPVEDYVDSAVKQALQIHLIPNPD----QKYPW 88
          +F +  G +  F IP   F   VF      +       +   +  ++  PD    +  P+
Sbjct: 20 RFCDLPGIMQHFTIPASAFDKSVFDDGLAFDGSSIRGFQSIHESDMLLLPDPETARIDPF 79


>d1y5ia2 c.81.1.1 (A:1-1074) Respiratory nitrate reductase 1 alpha
           chain {Escherichia coli [TaxId: 562]}
          Length = 1074

 Score = 25.2 bits (54), Expect = 3.7
 Identities = 8/48 (16%), Positives = 13/48 (27%)

Query: 42  PTFHIPGRTFPVDVFFAKNPVEDYVDSAVKQALQIHLIPNPDQKYPWP 89
           P       T   +   A     DY   ++K+         P+     P
Sbjct: 659 PQLGTNPLTIAGEAEKAGMNPVDYTVKSLKEGSIRFAAEQPENGKNHP 706


>d1qlwa_ c.69.1.15 (A:) A novel bacterial esterase {Alcaligenes
          sp. [TaxId: 512]}
          Length = 318

 Score = 24.8 bits (52), Expect = 4.9
 Identities = 9/45 (20%), Positives = 17/45 (37%)

Query: 43 TFHIPGRTFPVDVFFAKNPVEDYVDSAVKQALQIHLIPNPDQKYP 87
          +F + GR    +        + +    V Q    + IP   ++YP
Sbjct: 16 SFFVGGRDVTSETLSLSPKYDAHGTVTVDQMYVRYQIPQRAKRYP 60


>d1cnua_ d.109.1.2 (A:) Cofilin (actin depolymerizing factor, ADF)
           {Acanthamoeba castellanii, actophorin [TaxId: 5755]}
          Length = 134

 Score = 23.7 bits (51), Expect = 7.7
 Identities = 7/47 (14%), Positives = 17/47 (36%), Gaps = 4/47 (8%)

Query: 91  FQKVRFGRYSGPKLRYLGLCIEKAQKELALFTTLPLATGRSNFADSL 137
           F +++ G     + RY+   +  +  E+ +           +F   L
Sbjct: 12  FNELKLGH----QHRYVTFKMNASNTEVVVEHVGGPNATYEDFKSQL 54


>d1ul7a_ d.129.6.1 (A:) Map/microtubule affinity-regulating kinase 3
           {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 102

 Score = 23.2 bits (50), Expect = 9.7
 Identities = 12/36 (33%), Positives = 15/36 (41%), Gaps = 1/36 (2%)

Query: 85  KYPWPCFQKVRFGRYSGPKLRYLGLCIEKAQKELAL 120
           K P      VRF R SG  + +  +   K   EL L
Sbjct: 68  KLPRLSLNGVRFKRISGTSIAFKNIA-SKIANELKL 102


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.327    0.142    0.439 

Gapped
Lambda     K      H
   0.267   0.0575    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 525,168
Number of extensions: 23018
Number of successful extensions: 66
Number of sequences better than 10.0: 1
Number of HSP's gapped: 66
Number of HSP's successfully gapped: 10
Length of query: 140
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 63
Effective length of database: 1,350,386
Effective search space: 85074318
Effective search space used: 85074318
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 48 (22.6 bits)