Query psy14927
Match_columns 1074
No_of_seqs 856 out of 4459
Neff 8.3
Searched_HMMs 46136
Date Fri Aug 16 15:56:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14927.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14927hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3617|consensus 100.0 4.5E-65 9.8E-70 573.7 26.1 365 3-373 865-1347(1416)
2 KOG3616|consensus 100.0 8.4E-55 1.8E-59 484.5 31.2 577 36-822 459-1169(1636)
3 COG1249 Lpd Pyruvate/2-oxoglut 100.0 7.3E-37 1.6E-41 353.2 34.1 210 856-1072 108-334 (454)
4 KOG0405|consensus 100.0 7.2E-37 1.6E-41 320.9 23.6 311 490-1072 21-349 (478)
5 KOG1335|consensus 100.0 9.4E-36 2E-40 316.5 27.1 319 491-1073 41-377 (506)
6 KOG3616|consensus 100.0 1.2E-34 2.6E-39 324.0 24.7 561 7-779 555-1187(1636)
7 PRK06467 dihydrolipoamide dehy 100.0 1.1E-32 2.4E-37 328.0 29.8 275 795-1073 5-337 (471)
8 KOG4716|consensus 100.0 1.9E-33 4.2E-38 293.6 18.5 323 491-1073 21-365 (503)
9 PRK06115 dihydrolipoamide dehy 100.0 5.1E-32 1.1E-36 322.2 30.6 276 795-1073 4-338 (466)
10 PRK06416 dihydrolipoamide dehy 100.0 1.3E-31 2.8E-36 319.7 29.7 272 795-1073 5-334 (462)
11 TIGR03452 mycothione_red mycot 100.0 5.2E-31 1.1E-35 312.0 32.4 207 855-1073 105-328 (452)
12 PRK05249 soluble pyridine nucl 100.0 2.4E-31 5.3E-36 317.4 29.8 272 795-1073 6-335 (461)
13 TIGR01424 gluta_reduc_2 glutat 100.0 4E-31 8.6E-36 313.3 29.4 266 795-1073 3-326 (446)
14 PLN02507 glutathione reductase 100.0 5.3E-31 1.1E-35 314.7 29.7 271 794-1073 25-363 (499)
15 TIGR01421 gluta_reduc_1 glutat 100.0 6.1E-31 1.3E-35 311.3 29.4 265 795-1072 3-327 (450)
16 PRK07845 flavoprotein disulfid 100.0 6.1E-31 1.3E-35 312.9 29.2 270 796-1073 3-337 (466)
17 PRK06116 glutathione reductase 100.0 1.1E-30 2.3E-35 310.6 28.2 264 795-1073 5-328 (450)
18 PRK05976 dihydrolipoamide dehy 100.0 2.7E-30 6E-35 308.6 30.0 273 795-1073 5-343 (472)
19 PRK07818 dihydrolipoamide dehy 100.0 3.5E-30 7.6E-35 307.1 30.0 275 795-1073 5-336 (466)
20 PRK06370 mercuric reductase; V 100.0 3.7E-30 7.9E-35 307.0 30.0 268 795-1073 6-334 (463)
21 PRK08010 pyridine nucleotide-d 100.0 5E-30 1.1E-34 304.1 29.1 269 795-1073 4-317 (441)
22 TIGR02053 MerA mercuric reduct 100.0 7.7E-30 1.7E-34 304.4 29.9 268 796-1073 2-329 (463)
23 TIGR01438 TGR thioredoxin and 100.0 6.7E-30 1.5E-34 304.0 29.2 272 796-1073 4-344 (484)
24 PRK06327 dihydrolipoamide dehy 100.0 8.6E-30 1.9E-34 304.1 30.0 274 795-1073 5-347 (475)
25 TIGR01423 trypano_reduc trypan 100.0 8.6E-30 1.9E-34 302.2 28.2 270 795-1073 4-351 (486)
26 PLN02546 glutathione reductase 100.0 7.3E-30 1.6E-34 305.8 27.8 266 794-1073 79-413 (558)
27 PRK06912 acoL dihydrolipoamide 100.0 1.2E-29 2.5E-34 301.8 28.8 270 796-1073 2-330 (458)
28 PTZ00058 glutathione reductase 100.0 1.8E-29 3.8E-34 302.2 29.3 268 794-1073 48-432 (561)
29 TIGR01350 lipoamide_DH dihydro 100.0 4.4E-29 9.5E-34 298.2 30.0 271 796-1073 3-332 (461)
30 PRK07251 pyridine nucleotide-d 100.0 9.6E-29 2.1E-33 292.8 29.3 269 795-1073 4-316 (438)
31 PRK07846 mycothione reductase; 100.0 8.3E-29 1.8E-33 292.9 27.5 265 796-1073 3-325 (451)
32 PRK14694 putative mercuric red 100.0 1.4E-28 3E-33 293.4 29.3 267 794-1073 6-335 (468)
33 PRK13748 putative mercuric red 100.0 1E-28 2.2E-33 302.1 28.6 268 794-1073 98-428 (561)
34 PRK14727 putative mercuric red 100.0 1.3E-28 2.8E-33 294.0 28.5 269 794-1073 16-346 (479)
35 PTZ00052 thioredoxin reductase 100.0 1.7E-28 3.7E-33 293.4 28.6 268 796-1073 7-341 (499)
36 PRK06292 dihydrolipoamide dehy 100.0 2.4E-28 5.1E-33 291.7 28.0 264 796-1072 5-330 (460)
37 COG1252 Ndh NADH dehydrogenase 100.0 3.6E-29 7.9E-34 281.7 19.6 263 794-1072 3-329 (405)
38 PTZ00153 lipoamide dehydrogena 100.0 3.7E-28 7.9E-33 294.2 29.2 274 794-1073 116-495 (659)
39 PRK14989 nitrite reductase sub 100.0 1E-28 2.2E-33 308.3 24.7 267 795-1073 4-310 (847)
40 PRK09754 phenylpropionate diox 100.0 2.1E-28 4.6E-33 285.9 22.4 264 795-1073 4-309 (396)
41 PRK13512 coenzyme A disulfide 100.0 1.7E-28 3.6E-33 290.0 21.0 262 796-1073 3-312 (438)
42 PTZ00318 NADH dehydrogenase-li 100.0 3.8E-28 8.2E-33 285.8 21.8 263 793-1072 9-345 (424)
43 PRK09564 coenzyme A disulfide 100.0 3.7E-28 8E-33 288.9 20.9 265 796-1073 2-317 (444)
44 PRK04965 NADH:flavorubredoxin 100.0 2.4E-27 5.2E-32 275.5 23.5 263 795-1073 3-302 (377)
45 TIGR02374 nitri_red_nirB nitri 100.0 3E-27 6.6E-32 296.0 23.8 264 797-1073 1-301 (785)
46 TIGR03169 Nterm_to_SelD pyridi 99.9 9.8E-27 2.1E-31 269.4 20.7 257 796-1071 1-307 (364)
47 TIGR01292 TRX_reduct thioredox 99.9 1.2E-26 2.5E-31 261.4 20.7 263 796-1072 2-298 (300)
48 COG0492 TrxB Thioredoxin reduc 99.9 2.1E-26 4.4E-31 254.5 19.6 261 795-1071 4-297 (305)
49 PRK09853 putative selenate red 99.9 4.4E-26 9.6E-31 281.5 23.7 260 793-1072 538-839 (1019)
50 PRK12831 putative oxidoreducta 99.9 3E-26 6.5E-31 271.4 19.3 262 793-1071 139-457 (464)
51 TIGR01316 gltA glutamate synth 99.9 2.5E-26 5.5E-31 271.7 18.6 259 794-1072 133-447 (449)
52 TIGR03315 Se_ygfK putative sel 99.9 1.5E-25 3.2E-30 278.6 22.0 260 793-1073 536-838 (1012)
53 TIGR03140 AhpF alkyl hydropero 99.9 1.8E-25 3.8E-30 269.0 19.3 263 794-1072 212-510 (515)
54 PRK10262 thioredoxin reductase 99.9 3.7E-25 7.9E-30 251.6 19.8 266 794-1071 6-311 (321)
55 KOG1336|consensus 99.9 4.6E-25 9.9E-30 245.2 17.7 262 794-1070 74-380 (478)
56 PRK15317 alkyl hydroperoxide r 99.9 9.1E-25 2E-29 263.2 20.6 263 794-1071 211-508 (517)
57 PRK12778 putative bifunctional 99.9 1.1E-24 2.4E-29 273.4 20.8 261 794-1071 431-746 (752)
58 PRK12779 putative bifunctional 99.9 1.8E-24 3.9E-29 272.6 21.6 261 794-1071 306-623 (944)
59 PRK11749 dihydropyrimidine deh 99.9 3E-24 6.4E-29 255.4 21.0 259 794-1071 140-448 (457)
60 PRK12814 putative NADPH-depend 99.9 3.5E-24 7.5E-29 263.6 22.1 260 794-1071 193-497 (652)
61 TIGR03143 AhpF_homolog putativ 99.9 3.7E-24 8E-29 259.4 20.1 263 795-1071 5-305 (555)
62 COG1251 NirB NAD(P)H-nitrite r 99.9 3.7E-24 8.1E-29 247.6 15.1 265 795-1073 4-306 (793)
63 TIGR01318 gltD_gamma_fam gluta 99.9 1.4E-23 3.1E-28 249.0 20.2 259 794-1071 141-462 (467)
64 PRK12770 putative glutamate sy 99.9 1.9E-23 4.2E-28 240.2 20.4 267 794-1072 18-347 (352)
65 PRK12775 putative trifunctiona 99.9 2.5E-23 5.4E-28 264.8 20.8 261 794-1071 430-751 (1006)
66 TIGR03385 CoA_CoA_reduc CoA-di 99.9 4.5E-23 9.8E-28 243.8 20.4 253 809-1073 2-304 (427)
67 PRK12769 putative oxidoreducta 99.9 6.3E-23 1.4E-27 253.8 20.4 259 794-1071 327-648 (654)
68 PRK12810 gltD glutamate syntha 99.9 1.2E-22 2.5E-27 242.2 18.0 264 794-1071 143-461 (471)
69 PRK12809 putative oxidoreducta 99.9 1.6E-22 3.4E-27 249.1 19.6 259 794-1071 310-631 (639)
70 KOG0404|consensus 99.9 4.6E-23 9.9E-28 204.8 11.4 258 796-1069 10-313 (322)
71 KOG2495|consensus 99.9 3.6E-21 7.9E-26 209.7 15.7 268 793-1071 54-393 (491)
72 KOG2247|consensus 99.9 4.9E-24 1.1E-28 232.8 -7.6 316 4-366 180-504 (615)
73 TIGR01317 GOGAT_sm_gam glutama 99.9 7.8E-21 1.7E-25 226.5 17.6 263 794-1071 143-475 (485)
74 KOG1538|consensus 99.8 1.4E-20 3E-25 210.3 15.1 198 6-214 642-868 (1081)
75 PRK12771 putative glutamate sy 99.8 3.4E-20 7.4E-25 226.0 19.0 257 794-1071 137-440 (564)
76 PLN02852 ferredoxin-NADP+ redu 99.8 4.4E-20 9.6E-25 216.4 18.8 269 794-1072 26-419 (491)
77 PRK13984 putative oxidoreducta 99.8 3.5E-20 7.7E-25 228.1 17.9 257 794-1071 283-598 (604)
78 COG3634 AhpF Alkyl hydroperoxi 99.8 1.2E-20 2.5E-25 199.0 11.3 262 795-1070 212-510 (520)
79 TIGR01372 soxA sarcosine oxida 99.8 1.5E-18 3.2E-23 223.0 23.4 254 795-1071 164-468 (985)
80 COG0446 HcaD Uncharacterized N 99.7 3E-17 6.5E-22 193.5 20.1 262 797-1072 1-309 (415)
81 KOG1335|consensus 99.7 3.3E-18 7.1E-23 183.3 9.9 157 369-534 328-492 (506)
82 COG1249 Lpd Pyruvate/2-oxoglut 99.7 8.3E-18 1.8E-22 195.1 10.3 156 368-533 285-450 (454)
83 KOG2041|consensus 99.7 3E-15 6.4E-20 169.3 25.6 281 10-320 748-1047(1189)
84 COG0493 GltD NADPH-dependent g 99.7 1.1E-16 2.4E-21 186.0 10.9 266 793-1071 122-447 (457)
85 KOG3851|consensus 99.7 1E-16 2.3E-21 167.9 8.6 264 794-1070 39-356 (446)
86 KOG0399|consensus 99.6 7.2E-16 1.6E-20 181.6 11.5 267 792-1070 1783-2115(2142)
87 PRK14727 putative mercuric red 99.6 6.1E-16 1.3E-20 185.2 10.4 156 369-533 297-460 (479)
88 PRK06467 dihydrolipoamide dehy 99.6 9E-16 2E-20 183.2 10.9 156 369-533 288-451 (471)
89 PRK05249 soluble pyridine nucl 99.6 6.9E-16 1.5E-20 184.6 9.9 156 369-533 286-449 (461)
90 PLN02172 flavin-containing mon 99.6 7.9E-15 1.7E-19 173.1 18.7 250 794-1073 10-351 (461)
91 PRK07818 dihydrolipoamide dehy 99.6 9.1E-16 2E-20 183.4 10.8 156 369-533 287-452 (466)
92 COG1148 HdrA Heterodisulfide r 99.6 5.6E-15 1.2E-19 163.2 15.8 268 795-1069 125-539 (622)
93 PRK06370 mercuric reductase; V 99.6 9.9E-16 2.1E-20 183.0 10.6 156 369-533 285-449 (463)
94 PRK14694 putative mercuric red 99.6 1.3E-15 2.8E-20 182.0 11.2 154 371-533 288-449 (468)
95 PRK06327 dihydrolipoamide dehy 99.6 1.2E-15 2.6E-20 182.6 10.7 156 369-533 298-461 (475)
96 TIGR01424 gluta_reduc_2 glutat 99.6 1.5E-15 3.2E-20 180.4 10.5 156 369-533 277-442 (446)
97 TIGR03452 mycothione_red mycot 99.6 1.7E-15 3.6E-20 179.9 10.6 156 369-533 279-445 (452)
98 PRK08010 pyridine nucleotide-d 99.6 1.7E-15 3.8E-20 179.9 10.6 156 369-533 268-433 (441)
99 PRK06912 acoL dihydrolipoamide 99.6 1.9E-15 4.1E-20 180.2 10.6 155 369-533 282-444 (458)
100 PRK06115 dihydrolipoamide dehy 99.6 2E-15 4.4E-20 180.0 10.7 155 369-533 290-452 (466)
101 PF02852 Pyr_redox_dim: Pyridi 99.6 1.5E-15 3.2E-20 143.7 7.3 106 419-533 1-106 (110)
102 PRK07846 mycothione reductase; 99.6 2.4E-15 5.1E-20 178.4 10.6 157 368-533 275-442 (451)
103 TIGR01421 gluta_reduc_1 glutat 99.6 2.3E-15 5.1E-20 178.6 10.5 156 369-533 279-446 (450)
104 PRK07845 flavoprotein disulfid 99.6 2.9E-15 6.3E-20 178.7 10.9 156 369-533 288-452 (466)
105 PRK06292 dihydrolipoamide dehy 99.6 3E-15 6.5E-20 179.0 10.9 157 369-534 282-447 (460)
106 PRK06116 glutathione reductase 99.6 2.9E-15 6.3E-20 178.4 10.6 156 369-533 279-446 (450)
107 TIGR02053 MerA mercuric reduct 99.6 3.2E-15 6.9E-20 178.8 10.7 156 369-533 280-444 (463)
108 PLN02546 glutathione reductase 99.6 4E-15 8.6E-20 179.1 9.2 160 369-537 364-532 (558)
109 KOG1346|consensus 99.6 6E-15 1.3E-19 159.2 8.9 208 854-1072 269-518 (659)
110 PRK13748 putative mercuric red 99.6 6.5E-15 1.4E-19 180.5 10.4 156 369-533 379-542 (561)
111 PRK07251 pyridine nucleotide-d 99.6 6.5E-15 1.4E-19 174.8 10.0 157 369-534 267-433 (438)
112 PRK05976 dihydrolipoamide dehy 99.5 1.4E-14 3.1E-19 173.4 11.2 153 372-533 297-458 (472)
113 TIGR01423 trypano_reduc trypan 99.5 1.4E-14 3E-19 172.6 10.5 158 368-534 301-468 (486)
114 KOG2041|consensus 99.5 4.4E-13 9.5E-18 152.0 21.3 237 37-296 679-967 (1189)
115 PLN02507 glutathione reductase 99.5 1.7E-14 3.6E-19 173.0 10.7 158 369-535 314-481 (499)
116 KOG3617|consensus 99.5 1.8E-12 3.8E-17 149.5 26.1 279 8-316 812-1129(1416)
117 PRK06416 dihydrolipoamide dehy 99.5 2.1E-14 4.6E-19 171.7 10.8 153 372-533 288-448 (462)
118 PTZ00153 lipoamide dehydrogena 99.5 2.6E-14 5.6E-19 174.1 10.8 152 373-533 444-646 (659)
119 TIGR01350 lipoamide_DH dihydro 99.5 8E-14 1.7E-18 166.8 10.6 156 369-533 283-447 (461)
120 PF07992 Pyr_redox_2: Pyridine 99.5 4.6E-14 1E-18 149.0 7.3 175 796-1053 1-200 (201)
121 TIGR01438 TGR thioredoxin and 99.5 1E-13 2.2E-18 165.5 10.6 154 372-534 297-465 (484)
122 PRK06567 putative bifunctional 99.5 6E-13 1.3E-17 163.3 16.6 112 932-1071 626-766 (1028)
123 KOG1538|consensus 99.5 3E-13 6.4E-18 152.4 12.3 161 614-775 672-845 (1081)
124 PTZ00058 glutathione reductase 99.4 2.2E-13 4.8E-18 164.0 10.6 154 371-533 351-553 (561)
125 PTZ00052 thioredoxin reductase 99.4 2.6E-13 5.7E-18 162.8 10.3 155 369-533 292-474 (499)
126 TIGR02917 PEP_TPR_lipo putativ 99.4 2.2E-08 4.7E-13 129.7 53.8 138 623-761 702-864 (899)
127 TIGR02917 PEP_TPR_lipo putativ 99.3 1.2E-07 2.7E-12 122.6 55.8 134 626-759 569-728 (899)
128 KOG2755|consensus 99.3 2.5E-12 5.4E-17 132.1 6.8 180 864-1051 73-321 (334)
129 PRK13512 coenzyme A disulfide 99.3 1.1E-11 2.3E-16 147.1 10.2 152 369-532 253-426 (438)
130 PF00743 FMO-like: Flavin-bind 99.3 4.8E-11 1E-15 142.9 15.5 264 795-1073 2-395 (531)
131 PRK05329 anaerobic glycerol-3- 99.2 2.7E-10 5.8E-15 132.4 19.1 143 923-1072 233-418 (422)
132 PRK09564 coenzyme A disulfide 99.2 2E-11 4.4E-16 145.5 10.1 155 369-533 258-433 (444)
133 TIGR03385 CoA_CoA_reduc CoA-di 99.1 1.5E-10 3.3E-15 137.2 10.4 152 369-530 245-417 (427)
134 PTZ00188 adrenodoxin reductase 99.1 5E-10 1.1E-14 129.7 13.7 98 794-901 39-142 (506)
135 KOG0405|consensus 99.0 2.4E-10 5.3E-15 122.0 7.0 159 368-535 300-470 (478)
136 KOG1800|consensus 99.0 1.3E-09 2.8E-14 118.3 10.5 112 794-917 20-141 (468)
137 PRK11447 cellulose synthase su 98.9 8.4E-05 1.8E-09 99.1 50.6 127 6-132 38-208 (1157)
138 PF13738 Pyr_redox_3: Pyridine 98.9 5E-09 1.1E-13 110.8 8.5 140 798-939 1-200 (203)
139 COG3486 IucD Lysine/ornithine 98.8 2.3E-07 4.9E-12 102.8 20.0 211 858-1072 113-412 (436)
140 PF13434 K_oxygenase: L-lysine 98.8 6.4E-08 1.4E-12 110.2 13.6 149 859-1009 112-340 (341)
141 PLN03077 Protein ECB2; Provisi 98.6 0.0012 2.5E-08 85.8 47.6 135 626-773 556-717 (857)
142 PRK11447 cellulose synthase su 98.6 1.8E-05 3.9E-10 105.3 31.5 314 6-345 313-739 (1157)
143 COG2072 TrkA Predicted flavopr 98.6 1.5E-07 3.2E-12 111.2 10.0 149 794-942 8-211 (443)
144 TIGR00990 3a0801s09 mitochondr 98.5 6.5E-05 1.4E-09 93.5 31.7 72 5-76 136-220 (615)
145 KOG1399|consensus 98.5 8.2E-07 1.8E-11 103.5 11.5 125 794-918 6-180 (448)
146 KOG4716|consensus 98.4 7.8E-07 1.7E-11 95.2 9.8 153 373-533 319-484 (503)
147 KOG4626|consensus 98.4 1.7E-05 3.8E-10 90.9 20.2 82 50-131 252-346 (966)
148 COG2081 Predicted flavoprotein 98.4 3.1E-06 6.6E-11 94.4 13.1 79 924-1009 87-166 (408)
149 PRK11788 tetratricopeptide rep 98.4 0.00012 2.5E-09 85.8 27.3 105 7-131 46-167 (389)
150 PF14938 SNAP: Soluble NSF att 98.4 6.2E-06 1.3E-10 91.9 15.1 147 174-347 38-185 (282)
151 PLN03218 maturation of RBCL 1; 98.3 0.0008 1.7E-08 87.2 34.4 317 6-345 380-782 (1060)
152 KOG4626|consensus 98.3 3.2E-05 6.9E-10 88.8 18.4 84 252-346 354-451 (966)
153 PF02852 Pyr_redox_dim: Pyridi 98.3 3.1E-07 6.6E-12 86.9 1.9 65 390-454 8-73 (110)
154 TIGR00990 3a0801s09 mitochondr 98.2 0.00016 3.4E-09 90.2 25.2 106 9-131 307-425 (615)
155 KOG2003|consensus 98.2 0.00013 2.8E-09 80.8 20.7 263 3-354 426-694 (840)
156 PLN03218 maturation of RBCL 1; 98.2 0.0013 2.8E-08 85.4 33.5 268 53-345 409-747 (1060)
157 PLN03081 pentatricopeptide (PP 98.2 0.00038 8.3E-09 88.1 27.5 316 6-345 133-556 (697)
158 KOG1920|consensus 98.2 2.5E-05 5.4E-10 96.1 15.7 154 578-731 886-1055(1265)
159 TIGR03378 glycerol3P_GlpB glyc 98.1 0.0002 4.4E-09 82.7 21.3 123 946-1071 261-419 (419)
160 PRK15174 Vi polysaccharide exp 98.1 0.0004 8.6E-09 86.8 25.8 126 5-131 51-203 (656)
161 COG4529 Uncharacterized protei 98.1 0.00011 2.4E-09 84.3 18.4 101 970-1071 341-459 (474)
162 KOG1920|consensus 98.1 7.2E-05 1.6E-09 92.2 16.2 171 578-775 852-1054(1265)
163 PF03486 HI0933_like: HI0933-l 98.0 3.8E-06 8.2E-11 97.7 4.9 54 842-897 109-166 (409)
164 PRK09782 bacteriophage N4 rece 98.0 0.14 3.1E-06 66.3 47.5 87 8-114 56-151 (987)
165 PRK15174 Vi polysaccharide exp 98.0 0.0007 1.5E-08 84.6 24.3 276 7-305 87-406 (656)
166 PF00070 Pyr_redox: Pyridine n 98.0 3.3E-05 7.2E-10 68.3 9.0 65 922-987 15-79 (80)
167 PRK10049 pgaA outer membrane p 97.9 0.0012 2.5E-08 84.3 25.5 126 8-133 27-178 (765)
168 PF04053 Coatomer_WDAD: Coatom 97.9 4.7E-05 1E-09 89.2 11.8 108 35-145 332-442 (443)
169 PLN03081 pentatricopeptide (PP 97.9 0.00095 2.1E-08 84.5 24.4 80 50-129 290-384 (697)
170 KOG0985|consensus 97.9 0.017 3.7E-07 70.4 32.3 318 6-355 994-1362(1666)
171 PRK11788 tetratricopeptide rep 97.9 0.0078 1.7E-07 70.3 29.8 77 57-133 42-135 (389)
172 KOG2002|consensus 97.9 0.013 2.8E-07 71.8 30.9 204 105-346 307-525 (1018)
173 PLN03077 Protein ECB2; Provisi 97.9 0.0084 1.8E-07 77.9 32.2 158 177-346 430-618 (857)
174 PRK08275 putative oxidoreducta 97.9 0.00013 2.8E-09 89.3 14.4 44 1028-1071 357-401 (554)
175 PRK08401 L-aspartate oxidase; 97.9 4.1E-05 8.9E-10 91.7 9.5 46 1027-1072 310-364 (466)
176 COG0029 NadB Aspartate oxidase 97.8 8.5E-05 1.8E-09 85.0 10.0 45 1028-1072 342-395 (518)
177 PF14938 SNAP: Soluble NSF att 97.8 0.00055 1.2E-08 76.3 16.4 110 253-367 136-246 (282)
178 PRK06854 adenylylsulfate reduc 97.8 0.00017 3.7E-09 89.0 13.4 38 1034-1071 389-428 (608)
179 PRK06263 sdhA succinate dehydr 97.8 0.00029 6.4E-09 86.1 15.2 45 1027-1071 348-400 (543)
180 TIGR00136 gidA glucose-inhibit 97.8 0.00015 3.2E-09 87.2 11.8 49 847-897 101-154 (617)
181 PF13429 TPR_15: Tetratricopep 97.7 4E-05 8.6E-10 85.5 6.4 210 47-304 41-279 (280)
182 KOG1840|consensus 97.7 0.0026 5.7E-08 75.2 21.6 113 5-129 208-349 (508)
183 TIGR00551 nadB L-aspartate oxi 97.7 0.00017 3.6E-09 87.1 11.7 46 1027-1072 333-387 (488)
184 TIGR01812 sdhA_frdA_Gneg succi 97.7 0.00028 6.1E-09 86.8 13.7 45 1027-1071 342-399 (566)
185 KOG2495|consensus 97.7 6.1E-05 1.3E-09 84.1 6.3 102 796-898 220-330 (491)
186 PRK10747 putative protoheme IX 97.6 0.025 5.4E-07 66.5 27.5 246 35-301 98-389 (398)
187 KOG1840|consensus 97.6 0.00076 1.6E-08 79.7 14.4 156 6-188 251-439 (508)
188 KOG0985|consensus 97.6 0.01 2.3E-07 72.2 23.2 91 8-99 1060-1156(1666)
189 PLN02463 lycopene beta cyclase 97.6 0.0002 4.3E-09 84.7 9.2 102 794-897 28-169 (447)
190 PRK09077 L-aspartate oxidase; 97.6 0.00051 1.1E-08 83.7 12.8 46 1027-1072 353-407 (536)
191 KOG1586|consensus 97.6 0.011 2.4E-07 61.2 20.0 104 63-187 27-143 (288)
192 KOG1126|consensus 97.5 0.003 6.4E-08 74.4 18.0 254 50-365 353-635 (638)
193 PRK13800 putative oxidoreducta 97.5 0.00097 2.1E-08 86.2 15.7 45 1027-1071 361-406 (897)
194 PRK07804 L-aspartate oxidase; 97.5 0.0005 1.1E-08 83.9 12.4 45 1027-1071 357-410 (541)
195 PF01494 FAD_binding_3: FAD bi 97.5 0.00024 5.3E-09 81.6 9.1 59 950-1009 113-171 (356)
196 PRK13977 myosin-cross-reactive 97.5 0.00077 1.7E-08 80.5 12.8 65 948-1015 226-298 (576)
197 TIGR00540 hemY_coli hemY prote 97.5 0.047 1E-06 64.4 28.0 259 35-309 98-406 (409)
198 PRK08071 L-aspartate oxidase; 97.5 0.00061 1.3E-08 82.5 11.9 45 1028-1072 333-386 (510)
199 PRK05945 sdhA succinate dehydr 97.5 0.00028 6E-09 86.8 9.0 44 1028-1071 352-410 (575)
200 TIGR01790 carotene-cycl lycope 97.5 0.00018 3.9E-09 84.3 7.0 100 796-897 1-141 (388)
201 PRK09231 fumarate reductase fl 97.4 0.00066 1.4E-08 83.5 11.8 45 1027-1071 358-411 (582)
202 PLN02697 lycopene epsilon cycl 97.4 0.0005 1.1E-08 82.7 10.4 140 756-897 69-248 (529)
203 PF13429 TPR_15: Tetratricopep 97.4 0.00035 7.5E-09 77.9 8.5 158 7-184 88-274 (280)
204 PRK08205 sdhA succinate dehydr 97.4 0.0014 3.1E-08 80.7 14.6 44 1028-1071 357-415 (583)
205 TIGR00275 flavoprotein, HI0933 97.4 0.00063 1.4E-08 79.9 11.0 81 922-1010 79-160 (400)
206 TIGR02032 GG-red-SF geranylger 97.4 0.00021 4.5E-09 80.0 6.6 101 796-897 2-148 (295)
207 PRK09782 bacteriophage N4 rece 97.4 0.075 1.6E-06 68.9 30.2 125 6-131 386-535 (987)
208 PRK10049 pgaA outer membrane p 97.4 0.057 1.2E-06 69.1 29.2 115 236-354 253-393 (765)
209 PF04053 Coatomer_WDAD: Coatom 97.4 0.0041 8.9E-08 73.1 17.1 154 35-192 275-436 (443)
210 PRK06847 hypothetical protein; 97.4 0.0011 2.3E-08 77.3 12.3 57 948-1010 107-163 (375)
211 TIGR01176 fum_red_Fp fumarate 97.4 0.0012 2.6E-08 81.1 12.4 45 1027-1071 357-410 (580)
212 COG2956 Predicted N-acetylgluc 97.3 0.016 3.4E-07 63.0 18.9 219 77-373 37-266 (389)
213 PRK08626 fumarate reductase fl 97.3 0.0016 3.4E-08 81.1 13.4 44 1028-1071 373-426 (657)
214 PRK14989 nitrite reductase sub 97.3 0.0004 8.7E-09 88.4 8.3 136 369-532 257-416 (847)
215 PF01134 GIDA: Glucose inhibit 97.3 0.00034 7.4E-09 79.9 6.5 48 846-895 99-150 (392)
216 PRK04176 ribulose-1,5-biphosph 97.3 0.00025 5.4E-09 77.7 4.8 102 796-897 27-173 (257)
217 KOG0547|consensus 97.3 0.02 4.3E-07 65.3 19.2 331 7-351 126-571 (606)
218 PRK08163 salicylate hydroxylas 97.2 0.0016 3.6E-08 76.4 11.7 54 950-1009 111-165 (396)
219 TIGR02521 type_IV_pilW type IV 97.2 0.0068 1.5E-07 64.3 15.4 123 6-128 41-192 (234)
220 PRK06184 hypothetical protein; 97.2 0.0026 5.6E-08 77.2 13.4 57 950-1009 111-167 (502)
221 PLN00128 Succinate dehydrogena 97.2 0.0026 5.5E-08 78.8 13.4 34 1038-1071 421-463 (635)
222 KOG2076|consensus 97.2 0.026 5.7E-07 68.8 21.1 263 6-300 149-510 (895)
223 PRK07395 L-aspartate oxidase; 97.2 0.0016 3.4E-08 79.5 11.2 44 1027-1070 347-399 (553)
224 KOG1585|consensus 97.2 0.04 8.7E-07 57.6 19.4 167 52-289 20-189 (308)
225 PRK09754 phenylpropionate diox 97.2 0.00059 1.3E-08 80.1 6.9 90 796-898 146-242 (396)
226 PRK07588 hypothetical protein; 97.2 0.0019 4E-08 75.8 10.9 43 961-1009 115-157 (391)
227 COG1252 Ndh NADH dehydrogenase 97.1 0.00073 1.6E-08 77.6 6.9 99 795-899 156-264 (405)
228 PRK04965 NADH:flavorubredoxin 97.1 0.00079 1.7E-08 78.5 7.1 90 796-898 143-240 (377)
229 COG3075 GlpB Anaerobic glycero 97.1 0.0047 1E-07 67.0 12.0 122 947-1071 257-414 (421)
230 PRK09897 hypothetical protein; 97.1 0.0011 2.4E-08 79.8 8.3 30 796-825 3-39 (534)
231 PF01266 DAO: FAD dependent ox 97.1 0.0038 8.3E-08 71.7 12.5 58 947-1011 146-204 (358)
232 PRK06126 hypothetical protein; 97.1 0.005 1.1E-07 75.6 14.1 59 950-1009 128-187 (545)
233 PF00070 Pyr_redox: Pyridine n 97.1 0.00052 1.1E-08 60.7 4.0 72 796-879 1-80 (80)
234 KOG2003|consensus 97.1 0.016 3.6E-07 64.7 16.2 174 61-304 501-691 (840)
235 KOG1586|consensus 97.1 0.015 3.3E-07 60.2 14.6 107 236-346 77-183 (288)
236 KOG0276|consensus 97.1 0.0088 1.9E-07 69.3 14.3 146 36-197 601-747 (794)
237 KOG2066|consensus 97.1 0.07 1.5E-06 64.2 22.1 245 5-258 365-710 (846)
238 PRK10157 putative oxidoreducta 97.1 0.0012 2.6E-08 78.3 7.9 102 794-897 5-164 (428)
239 PRK07364 2-octaprenyl-6-methox 97.0 0.0045 9.7E-08 73.2 12.7 57 950-1009 123-180 (415)
240 KOG0276|consensus 97.0 0.0042 9E-08 71.9 11.3 110 34-144 650-760 (794)
241 TIGR03169 Nterm_to_SelD pyridi 97.0 0.00099 2.1E-08 77.3 6.7 95 796-898 147-244 (364)
242 PRK06475 salicylate hydroxylas 97.0 0.0038 8.2E-08 73.5 11.7 57 950-1009 109-166 (400)
243 PRK11728 hydroxyglutarate oxid 97.0 0.0055 1.2E-07 71.9 12.8 57 947-1010 148-204 (393)
244 PF13454 NAD_binding_9: FAD-NA 97.0 0.0021 4.6E-08 64.8 8.0 37 857-895 117-155 (156)
245 PRK08244 hypothetical protein; 97.0 0.0047 1E-07 74.8 12.3 58 950-1010 102-159 (493)
246 PRK07608 ubiquinone biosynthes 97.0 0.0017 3.6E-08 76.1 7.9 48 848-897 117-167 (388)
247 TIGR02028 ChlP geranylgeranyl 97.0 0.001 2.2E-08 78.1 6.1 50 848-897 99-160 (398)
248 TIGR02023 BchP-ChlP geranylger 96.9 0.0014 3.1E-08 76.7 6.9 102 796-897 2-155 (388)
249 PRK08773 2-octaprenyl-3-methyl 96.9 0.0042 9E-08 72.9 10.7 57 949-1011 114-170 (392)
250 PRK05714 2-octaprenyl-3-methyl 96.9 0.0035 7.5E-08 73.9 10.1 54 950-1009 114-167 (405)
251 COG0644 FixC Dehydrogenases (f 96.9 0.0018 3.9E-08 76.0 7.5 103 794-897 3-152 (396)
252 PRK05192 tRNA uridine 5-carbox 96.9 0.002 4.4E-08 77.8 7.9 48 848-897 106-157 (618)
253 PRK07190 hypothetical protein; 96.9 0.009 2E-07 71.9 13.4 54 950-1009 111-164 (487)
254 TIGR00292 thiazole biosynthesi 96.9 0.0012 2.6E-08 72.1 5.4 101 796-896 23-169 (254)
255 KOG2376|consensus 96.9 0.46 1E-05 55.8 26.0 314 6-345 56-486 (652)
256 PRK12370 invasion protein regu 96.9 0.077 1.7E-06 65.2 21.7 70 62-131 316-398 (553)
257 PRK08243 4-hydroxybenzoate 3-m 96.8 0.0081 1.8E-07 70.5 12.4 55 952-1009 107-162 (392)
258 PRK06834 hypothetical protein; 96.8 0.0022 4.8E-08 77.2 7.7 101 795-897 4-156 (488)
259 TIGR02521 type_IV_pilW type IV 96.8 0.13 2.8E-06 54.2 20.7 62 49-131 30-91 (234)
260 COG2509 Uncharacterized FAD-de 96.8 0.013 2.8E-07 66.9 12.7 44 1029-1072 438-481 (486)
261 PTZ00318 NADH dehydrogenase-li 96.8 0.0022 4.7E-08 76.0 7.2 95 796-898 175-281 (424)
262 KOG0495|consensus 96.8 0.17 3.7E-06 59.8 21.7 318 4-359 524-907 (913)
263 COG0654 UbiH 2-polyprenyl-6-me 96.8 0.0042 9.1E-08 72.7 9.3 56 949-1009 105-161 (387)
264 PRK10015 oxidoreductase; Provi 96.8 0.0089 1.9E-07 70.9 12.0 51 952-1008 112-162 (429)
265 PRK06183 mhpA 3-(3-hydroxyphen 96.8 0.0092 2E-07 73.1 12.3 59 950-1010 115-174 (538)
266 COG0579 Predicted dehydrogenas 96.7 0.003 6.6E-08 73.1 7.6 57 949-1010 154-211 (429)
267 PRK12842 putative succinate de 96.7 0.0038 8.2E-08 76.9 8.9 85 922-1010 175-275 (574)
268 COG0446 HcaD Uncharacterized N 96.7 0.0017 3.8E-08 76.4 5.7 91 795-898 137-238 (415)
269 PRK08132 FAD-dependent oxidore 96.7 0.014 3E-07 71.8 13.6 58 950-1010 127-185 (547)
270 KOG2076|consensus 96.7 0.39 8.5E-06 59.0 24.8 284 49-342 136-508 (895)
271 PRK09126 hypothetical protein; 96.7 0.008 1.7E-07 70.5 10.6 54 952-1011 114-168 (392)
272 PRK10747 putative protoheme IX 96.7 0.13 2.8E-06 60.4 20.7 52 227-278 335-387 (398)
273 PRK14574 hmsH outer membrane p 96.6 0.11 2.3E-06 66.1 20.8 81 51-132 70-163 (822)
274 TIGR01789 lycopene_cycl lycope 96.6 0.003 6.6E-08 73.2 6.7 98 796-897 1-138 (370)
275 PRK07843 3-ketosteroid-delta-1 96.6 0.0054 1.2E-07 75.2 9.2 84 925-1012 186-272 (557)
276 COG2907 Predicted NAD/FAD-bind 96.6 0.0024 5.3E-08 69.7 5.2 35 794-828 8-46 (447)
277 TIGR02374 nitri_red_nirB nitri 96.6 0.0035 7.5E-08 79.9 7.5 90 796-898 142-239 (785)
278 PF04820 Trp_halogenase: Trypt 96.6 0.011 2.4E-07 70.4 11.1 56 948-1010 154-211 (454)
279 PRK05868 hypothetical protein; 96.6 0.018 3.9E-07 67.0 12.5 44 960-1009 116-159 (372)
280 smart00299 CLH Clathrin heavy 96.6 0.041 8.9E-07 54.2 13.4 62 165-245 75-137 (140)
281 PRK07333 2-octaprenyl-6-methox 96.6 0.0033 7.1E-08 74.0 6.5 50 846-897 115-167 (403)
282 PRK11445 putative oxidoreducta 96.6 0.0056 1.2E-07 70.7 8.2 44 854-897 110-157 (351)
283 PRK08013 oxidoreductase; Provi 96.6 0.011 2.4E-07 69.6 10.7 54 950-1009 113-167 (400)
284 PF05834 Lycopene_cycl: Lycope 96.5 0.003 6.5E-08 73.5 5.9 100 796-897 1-142 (374)
285 PRK11189 lipoprotein NlpI; Pro 96.5 0.051 1.1E-06 61.0 15.6 83 47-130 95-190 (296)
286 TIGR01988 Ubi-OHases Ubiquinon 96.5 0.013 2.9E-07 68.3 11.3 54 950-1009 108-162 (385)
287 PRK00711 D-amino acid dehydrog 96.5 0.019 4E-07 68.0 12.5 54 949-1009 202-256 (416)
288 PRK07538 hypothetical protein; 96.5 0.016 3.5E-07 68.5 11.8 58 951-1009 105-164 (413)
289 COG5290 IkappaB kinase complex 96.5 0.13 2.8E-06 61.5 18.5 159 612-775 907-1081(1243)
290 PRK12409 D-amino acid dehydrog 96.5 0.02 4.4E-07 67.5 12.5 60 949-1009 198-257 (410)
291 PLN00093 geranylgeranyl diphos 96.5 0.006 1.3E-07 72.6 8.0 104 794-897 39-199 (450)
292 PRK07233 hypothetical protein; 96.5 0.014 3E-07 69.4 11.0 55 948-1008 198-252 (434)
293 KOG1155|consensus 96.4 0.25 5.5E-06 56.3 19.5 241 47-338 259-528 (559)
294 COG4783 Putative Zn-dependent 96.4 0.07 1.5E-06 61.3 15.2 126 10-144 308-451 (484)
295 PRK06134 putative FAD-binding 96.4 0.0078 1.7E-07 74.2 8.5 61 947-1010 216-278 (581)
296 PRK11259 solA N-methyltryptoph 96.4 0.021 4.7E-07 66.4 11.6 55 948-1009 149-203 (376)
297 PF00890 FAD_binding_2: FAD bi 96.3 0.023 5.1E-07 67.2 11.9 65 946-1011 139-204 (417)
298 PRK15359 type III secretion sy 96.3 0.021 4.5E-07 56.7 9.6 82 50-131 24-118 (144)
299 TIGR01377 soxA_mon sarcosine o 96.3 0.024 5.2E-07 66.1 11.8 55 948-1009 145-199 (380)
300 PRK07236 hypothetical protein; 96.3 0.0081 1.8E-07 70.3 7.6 40 856-897 112-154 (386)
301 PF12831 FAD_oxidored: FAD dep 96.3 0.00099 2.1E-08 79.0 -0.1 99 796-895 1-148 (428)
302 PRK12370 invasion protein regu 96.3 0.036 7.7E-07 68.1 13.4 83 47-129 335-430 (553)
303 COG1635 THI4 Ribulose 1,5-bisp 96.3 0.0015 3.3E-08 67.1 1.2 62 796-861 32-98 (262)
304 KOG0292|consensus 96.3 0.038 8.2E-07 66.7 12.6 120 35-157 657-779 (1202)
305 PRK07494 2-octaprenyl-6-methox 96.3 0.025 5.4E-07 66.3 11.3 53 950-1009 113-166 (388)
306 KOG1346|consensus 96.2 0.0056 1.2E-07 68.0 5.2 101 794-898 347-450 (659)
307 PRK08020 ubiF 2-octaprenyl-3-m 96.2 0.0068 1.5E-07 71.1 6.4 47 849-897 119-169 (391)
308 PRK06753 hypothetical protein; 96.2 0.0068 1.5E-07 70.6 6.2 40 856-897 110-152 (373)
309 TIGR01292 TRX_reduct thioredox 96.2 0.032 7E-07 62.5 11.6 86 922-1014 16-116 (300)
310 KOG1155|consensus 96.2 0.05 1.1E-06 61.7 12.4 132 4-135 372-537 (559)
311 COG1232 HemY Protoporphyrinoge 96.2 0.013 2.9E-07 68.4 8.4 33 796-828 2-41 (444)
312 PRK07045 putative monooxygenas 96.2 0.042 9E-07 64.4 12.5 54 950-1009 108-164 (388)
313 PRK15179 Vi polysaccharide bio 96.1 0.16 3.4E-06 63.4 17.9 151 589-760 49-214 (694)
314 PRK06481 fumarate reductase fl 96.1 0.01 2.2E-07 71.9 7.3 46 1027-1072 442-501 (506)
315 COG2956 Predicted N-acetylgluc 96.1 0.19 4E-06 54.9 15.7 127 627-753 110-268 (389)
316 KOG0547|consensus 96.1 0.054 1.2E-06 61.8 11.9 143 9-157 407-583 (606)
317 PF09976 TPR_21: Tetratricopep 96.0 0.073 1.6E-06 52.9 11.9 116 10-131 6-144 (145)
318 PRK06175 L-aspartate oxidase; 96.0 0.059 1.3E-06 64.0 13.1 59 947-1008 127-187 (433)
319 KOG1336|consensus 96.0 0.012 2.7E-07 67.4 6.6 90 796-898 215-314 (478)
320 TIGR02731 phytoene_desat phyto 96.0 0.045 9.8E-07 65.5 11.9 60 948-1008 213-274 (453)
321 TIGR01984 UbiH 2-polyprenyl-6- 95.9 0.008 1.7E-07 70.2 5.2 48 848-897 111-162 (382)
322 PLN02661 Putative thiazole syn 95.9 0.01 2.2E-07 67.0 5.6 32 795-826 93-130 (357)
323 PRK04841 transcriptional regul 95.9 6 0.00013 51.9 32.4 133 6-145 351-525 (903)
324 PRK08274 tricarballylate dehyd 95.9 0.051 1.1E-06 65.3 12.0 59 948-1008 131-190 (466)
325 PF12569 NARP1: NMDA receptor- 95.9 0.93 2E-05 54.6 22.3 177 109-346 198-380 (517)
326 TIGR02734 crtI_fam phytoene de 95.9 0.023 4.9E-07 69.1 8.9 55 948-1008 219-274 (502)
327 PRK08850 2-octaprenyl-6-methox 95.9 0.015 3.3E-07 68.5 7.1 41 855-897 125-168 (405)
328 TIGR00540 hemY_coli hemY prote 95.8 1.1 2.4E-05 52.8 22.6 42 236-277 351-395 (409)
329 PRK06185 hypothetical protein; 95.8 0.13 2.9E-06 60.5 14.8 57 950-1009 110-168 (407)
330 PRK08849 2-octaprenyl-3-methyl 95.8 0.019 4E-07 67.2 7.4 41 855-897 124-167 (384)
331 PF12895 Apc3: Anaphase-promot 95.8 0.03 6.5E-07 49.8 7.1 84 8-131 1-84 (84)
332 cd05804 StaR_like StaR_like; a 95.8 1.7 3.7E-05 49.9 23.7 127 6-132 53-213 (355)
333 PRK10370 formate-dependent nit 95.8 0.08 1.7E-06 55.7 11.3 85 47-131 70-170 (198)
334 PLN02985 squalene monooxygenas 95.7 0.066 1.4E-06 64.9 12.0 29 794-822 43-76 (514)
335 PRK15179 Vi polysaccharide bio 95.7 0.14 3.1E-06 63.7 14.9 129 36-184 71-214 (694)
336 TIGR03329 Phn_aa_oxid putative 95.7 0.07 1.5E-06 64.0 12.0 54 947-1008 182-235 (460)
337 PLN02487 zeta-carotene desatur 95.7 0.054 1.2E-06 66.0 10.8 60 946-1008 293-358 (569)
338 PRK10262 thioredoxin reductase 95.7 0.024 5.1E-07 64.6 7.4 90 795-898 147-249 (321)
339 PRK07121 hypothetical protein; 95.6 0.061 1.3E-06 65.1 11.2 59 947-1008 176-237 (492)
340 TIGR03219 salicylate_mono sali 95.6 0.021 4.5E-07 67.6 6.9 40 856-897 117-159 (414)
341 TIGR02360 pbenz_hydroxyl 4-hyd 95.6 0.018 3.9E-07 67.5 6.3 50 848-897 109-163 (390)
342 PRK11189 lipoprotein NlpI; Pro 95.6 0.48 1E-05 53.2 17.4 60 50-130 64-123 (296)
343 COG0445 GidA Flavin-dependent 95.6 0.0089 1.9E-07 69.5 3.3 47 848-896 106-157 (621)
344 PF01946 Thi4: Thi4 family; PD 95.5 0.0034 7.4E-08 65.1 -0.1 39 794-832 17-60 (230)
345 TIGR01373 soxB sarcosine oxida 95.5 0.12 2.7E-06 60.8 13.2 54 948-1008 183-238 (407)
346 PRK06617 2-octaprenyl-6-methox 95.5 0.026 5.6E-07 65.8 7.0 47 848-897 110-160 (374)
347 KOG2247|consensus 95.4 0.00056 1.2E-08 77.1 -6.7 150 619-777 222-373 (615)
348 TIGR01813 flavo_cyto_c flavocy 95.3 0.037 8.1E-07 66.0 7.8 51 847-897 135-192 (439)
349 PRK05732 2-octaprenyl-6-methox 95.2 0.038 8.2E-07 64.8 7.4 103 793-897 2-169 (395)
350 PRK15363 pathogenicity island 95.2 0.088 1.9E-06 52.3 8.5 93 5-144 44-136 (157)
351 COG3063 PilF Tfp pilus assembl 95.2 0.37 8E-06 50.5 13.2 146 7-152 46-228 (250)
352 KOG0495|consensus 95.2 0.49 1.1E-05 56.1 15.6 175 8-183 630-842 (913)
353 TIGR03302 OM_YfiO outer membra 95.2 0.81 1.7E-05 49.3 17.0 63 276-346 170-232 (235)
354 TIGR02732 zeta_caro_desat caro 95.1 0.16 3.5E-06 61.1 12.2 57 948-1008 219-282 (474)
355 PRK07803 sdhA succinate dehydr 95.0 0.15 3.3E-06 63.4 12.2 61 947-1008 137-211 (626)
356 PRK06452 sdhA succinate dehydr 95.0 0.22 4.7E-06 61.3 13.2 59 948-1007 136-195 (566)
357 PF13450 NAD_binding_8: NAD(P) 95.0 0.0098 2.1E-07 50.7 1.0 31 799-829 1-36 (68)
358 PF13414 TPR_11: TPR repeat; P 95.0 0.064 1.4E-06 45.5 6.2 62 49-131 2-64 (69)
359 KOG1524|consensus 94.9 0.1 2.2E-06 59.8 9.1 110 30-145 581-697 (737)
360 PRK08294 phenol 2-monooxygenas 94.9 0.2 4.3E-06 62.5 12.7 60 950-1009 143-209 (634)
361 PRK07573 sdhA succinate dehydr 94.8 0.1 2.3E-06 64.9 9.9 56 952-1008 174-230 (640)
362 TIGR03364 HpnW_proposed FAD de 94.8 0.16 3.5E-06 58.8 11.0 51 948-1009 145-196 (365)
363 PRK13369 glycerol-3-phosphate 94.8 0.079 1.7E-06 64.3 8.6 59 948-1008 155-213 (502)
364 KOG2114|consensus 94.8 0.67 1.4E-05 56.6 15.8 122 625-746 369-534 (933)
365 PRK06996 hypothetical protein; 94.8 0.04 8.7E-07 64.8 5.8 99 796-894 13-171 (398)
366 PRK11749 dihydropyrimidine deh 94.7 0.055 1.2E-06 64.9 7.0 88 795-898 274-388 (457)
367 PF00637 Clathrin: Region in C 94.7 0.0056 1.2E-07 60.7 -1.3 122 78-246 9-138 (143)
368 TIGR03302 OM_YfiO outer membra 94.6 0.45 9.8E-06 51.2 13.2 26 51-76 71-96 (235)
369 COG3898 Uncharacterized membra 94.6 4.2 9.1E-05 45.8 20.1 193 37-272 107-312 (531)
370 TIGR01811 sdhA_Bsu succinate d 94.6 0.19 4.2E-06 62.1 11.5 60 948-1008 129-194 (603)
371 TIGR01989 COQ6 Ubiquinone bios 94.6 0.067 1.5E-06 63.7 7.2 48 848-897 123-183 (437)
372 KOG1126|consensus 94.5 0.31 6.7E-06 58.1 12.1 71 9-79 434-518 (638)
373 PRK04841 transcriptional regul 94.5 4.7 0.0001 52.9 24.9 253 50-351 341-607 (903)
374 KOG2002|consensus 94.5 5.2 0.00011 50.1 22.5 215 48-282 450-710 (1018)
375 PRK09078 sdhA succinate dehydr 94.5 0.19 4.2E-06 62.1 11.1 61 947-1008 148-210 (598)
376 TIGR00137 gid_trmFO tRNA:m(5)U 94.5 0.034 7.5E-07 64.8 4.2 37 1034-1071 322-359 (433)
377 PLN03088 SGT1, suppressor of 94.4 0.19 4.1E-06 58.0 10.1 85 5-130 11-95 (356)
378 PRK07057 sdhA succinate dehydr 94.4 0.29 6.2E-06 60.6 12.3 62 947-1009 147-210 (591)
379 TIGR02552 LcrH_SycD type III s 94.4 0.22 4.7E-06 48.4 9.1 84 48-131 15-111 (135)
380 PRK01747 mnmC bifunctional tRN 94.3 0.11 2.3E-06 65.4 8.5 57 947-1010 407-463 (662)
381 PTZ00139 Succinate dehydrogena 94.3 0.22 4.7E-06 61.9 11.0 60 947-1007 165-226 (617)
382 PRK06069 sdhA succinate dehydr 94.3 0.31 6.7E-06 60.2 12.3 62 947-1009 136-199 (577)
383 PF06100 Strep_67kDa_ant: Stre 94.2 0.24 5.2E-06 58.0 10.3 64 948-1014 207-278 (500)
384 PTZ00383 malate:quinone oxidor 94.2 0.31 6.7E-06 58.7 11.7 54 949-1009 212-272 (497)
385 PRK12770 putative glutamate sy 94.2 0.068 1.5E-06 61.7 5.9 88 795-898 173-287 (352)
386 PRK07512 L-aspartate oxidase; 94.1 0.24 5.2E-06 60.2 10.7 151 796-1007 11-194 (513)
387 TIGR01316 gltA glutamate synth 94.1 0.085 1.8E-06 63.0 6.6 88 795-898 273-388 (449)
388 PRK12810 gltD glutamate syntha 94.1 0.087 1.9E-06 63.4 6.7 98 795-898 282-401 (471)
389 PRK02603 photosystem I assembl 94.1 0.71 1.5E-05 47.2 12.5 89 37-125 19-126 (172)
390 PRK08641 sdhA succinate dehydr 94.0 0.31 6.8E-06 60.2 11.5 61 947-1008 132-198 (589)
391 COG5290 IkappaB kinase complex 93.9 3.3 7.1E-05 50.3 18.5 139 86-237 901-1041(1243)
392 KOG2404|consensus 93.8 0.23 4.9E-06 54.1 8.2 85 923-1011 115-207 (477)
393 KOG0029|consensus 93.8 0.023 4.9E-07 68.0 0.9 36 794-829 15-55 (501)
394 PLN02172 flavin-containing mon 93.6 0.85 1.8E-05 54.6 13.9 64 948-1013 111-178 (461)
395 COG0578 GlpA Glycerol-3-phosph 93.6 0.083 1.8E-06 62.8 5.1 60 949-1009 165-224 (532)
396 KOG2820|consensus 93.5 0.13 2.7E-06 56.7 5.9 48 848-897 159-212 (399)
397 PF13432 TPR_16: Tetratricopep 93.5 0.15 3.2E-06 42.7 5.2 53 5-77 6-58 (65)
398 PRK12831 putative oxidoreducta 93.4 0.14 2.9E-06 61.5 6.7 88 795-898 282-397 (464)
399 PRK08958 sdhA succinate dehydr 93.4 0.29 6.4E-06 60.4 9.7 61 947-1008 142-204 (588)
400 PF12895 Apc3: Anaphase-promot 93.4 0.38 8.3E-06 42.6 8.0 69 637-705 2-84 (84)
401 cd05804 StaR_like StaR_like; a 93.4 2.1 4.6E-05 49.1 16.4 51 50-100 148-210 (355)
402 PRK15359 type III secretion sy 93.4 0.85 1.9E-05 45.2 11.3 83 623-705 23-118 (144)
403 KOG2114|consensus 93.3 2.2 4.8E-05 52.3 16.3 120 36-155 349-487 (933)
404 PF04097 Nic96: Nup93/Nic96; 93.3 2.1 4.6E-05 53.1 17.1 141 56-196 264-452 (613)
405 KOG0548|consensus 93.3 2.1 4.5E-05 50.1 15.5 77 55-131 229-324 (539)
406 PRK14574 hmsH outer membrane p 93.3 29 0.00063 44.6 27.2 139 7-145 45-230 (822)
407 PRK12839 hypothetical protein; 93.3 0.68 1.5E-05 57.0 12.6 60 947-1008 213-274 (572)
408 COG1231 Monoamine oxidase [Ami 93.2 0.26 5.5E-06 56.9 8.1 45 958-1008 216-260 (450)
409 PF12569 NARP1: NMDA receptor- 93.2 1.2 2.6E-05 53.7 14.1 163 11-197 125-331 (517)
410 PRK12845 3-ketosteroid-delta-1 93.2 0.62 1.3E-05 57.2 12.1 60 946-1008 215-276 (564)
411 TIGR03140 AhpF alkyl hydropero 93.1 0.49 1.1E-05 57.7 11.0 85 922-1012 228-325 (515)
412 CHL00033 ycf3 photosystem I as 93.1 0.86 1.9E-05 46.3 11.2 60 51-131 73-139 (168)
413 smart00299 CLH Clathrin heavy 93.1 0.94 2E-05 44.5 11.1 113 5-117 16-137 (140)
414 PLN02927 antheraxanthin epoxid 93.1 0.4 8.7E-06 59.3 10.1 38 965-1008 209-246 (668)
415 KOG1130|consensus 93.1 8.2 0.00018 43.7 18.9 19 4-22 25-43 (639)
416 PRK15317 alkyl hydroperoxide r 93.0 0.52 1.1E-05 57.4 11.1 85 922-1012 227-324 (517)
417 cd00189 TPR Tetratricopeptide 93.0 0.52 1.1E-05 40.9 8.4 85 7-132 11-95 (100)
418 PLN02815 L-aspartate oxidase 92.9 0.4 8.6E-06 59.1 9.9 158 796-1007 31-219 (594)
419 KOG0553|consensus 92.9 0.35 7.6E-06 52.6 8.1 75 60-134 91-178 (304)
420 PRK08255 salicylyl-CoA 5-hydro 92.9 0.073 1.6E-06 67.9 3.5 28 796-823 2-36 (765)
421 PTZ00367 squalene epoxidase; P 92.8 0.17 3.6E-06 62.0 6.2 29 794-822 33-66 (567)
422 COG3071 HemY Uncharacterized e 92.7 0.7 1.5E-05 52.1 10.3 104 4-129 271-385 (400)
423 PRK12266 glpD glycerol-3-phosp 92.7 0.3 6.5E-06 59.3 8.3 101 796-896 8-215 (508)
424 TIGR01372 soxA sarcosine oxida 92.6 0.2 4.3E-06 65.7 7.0 83 796-898 319-412 (985)
425 COG2509 Uncharacterized FAD-de 92.5 0.34 7.3E-06 55.7 7.7 96 924-1026 149-247 (486)
426 PTZ00306 NADH-dependent fumara 92.5 0.43 9.3E-06 63.7 10.0 61 950-1010 546-620 (1167)
427 TIGR02795 tol_pal_ybgF tol-pal 92.5 0.95 2E-05 42.4 9.9 81 50-130 2-101 (119)
428 PRK15363 pathogenicity island 92.4 1.2 2.7E-05 44.3 10.6 88 56-196 41-128 (157)
429 TIGR02061 aprA adenosine phosp 92.4 0.93 2E-05 56.0 12.0 153 796-1007 1-188 (614)
430 COG3071 HemY Uncharacterized e 92.3 24 0.00053 40.2 26.6 246 35-304 98-392 (400)
431 PF12688 TPR_5: Tetratrico pep 92.2 1.1 2.5E-05 42.7 9.7 82 624-705 1-101 (120)
432 PF09976 TPR_21: Tetratricopep 92.1 3.5 7.5E-05 40.8 13.7 98 663-760 24-144 (145)
433 PF13424 TPR_12: Tetratricopep 92.1 0.24 5.1E-06 43.1 4.7 67 51-131 6-72 (78)
434 KOG1129|consensus 92.0 3.4 7.3E-05 45.4 14.0 107 57-183 230-349 (478)
435 COG3063 PilF Tfp pilus assembl 92.0 0.88 1.9E-05 47.8 9.3 127 36-181 50-196 (250)
436 PRK04176 ribulose-1,5-biphosph 92.0 2.5 5.4E-05 46.3 13.7 122 948-1071 104-251 (257)
437 KOG1127|consensus 92.0 8.5 0.00018 48.4 18.8 113 52-196 494-621 (1238)
438 PRK11883 protoporphyrinogen ox 91.9 0.05 1.1E-06 65.1 0.2 33 796-828 2-41 (451)
439 PF14559 TPR_19: Tetratricopep 91.8 0.2 4.3E-06 42.2 3.9 54 6-79 1-54 (68)
440 PRK09853 putative selenate red 91.7 0.24 5.2E-06 63.6 5.9 88 795-898 669-780 (1019)
441 PF12931 Sec16_C: Sec23-bindin 91.5 2.1 4.6E-05 47.7 12.5 118 645-762 3-144 (284)
442 PRK12778 putative bifunctional 91.5 0.35 7.5E-06 61.8 7.2 88 795-898 571-687 (752)
443 PRK10370 formate-dependent nit 91.3 2.1 4.4E-05 45.0 11.7 33 101-133 69-101 (198)
444 TIGR03315 Se_ygfK putative sel 91.3 0.3 6.5E-06 63.0 6.3 88 795-898 667-777 (1012)
445 KOG0548|consensus 91.3 6.4 0.00014 46.2 16.2 274 54-342 6-323 (539)
446 KOG3060|consensus 91.0 2.5 5.4E-05 45.0 11.5 82 47-128 83-177 (289)
447 PRK14720 transcript cleavage f 91.0 6.3 0.00014 50.3 17.1 119 47-193 62-191 (906)
448 PRK07208 hypothetical protein; 90.9 0.077 1.7E-06 64.0 0.5 60 948-1008 218-278 (479)
449 KOG2415|consensus 90.9 0.079 1.7E-06 59.4 0.4 34 795-828 77-121 (621)
450 PF13424 TPR_12: Tetratricopep 90.8 3 6.5E-05 36.0 10.5 73 270-346 3-75 (78)
451 KOG2311|consensus 90.7 0.21 4.5E-06 57.1 3.6 36 1035-1071 382-418 (679)
452 COG3349 Uncharacterized conser 90.7 0.082 1.8E-06 61.9 0.4 33 796-828 2-39 (485)
453 TIGR01317 GOGAT_sm_gam glutama 90.6 0.43 9.4E-06 57.6 6.5 22 794-815 283-304 (485)
454 PF09295 ChAPs: ChAPs (Chs5p-A 90.6 1.7 3.8E-05 50.4 11.0 99 6-127 179-290 (395)
455 PF13176 TPR_7: Tetratricopept 90.5 0.38 8.2E-06 35.1 3.7 24 107-130 1-24 (36)
456 PF13432 TPR_16: Tetratricopep 90.5 0.54 1.2E-05 39.2 5.2 46 86-131 7-57 (65)
457 PF13414 TPR_11: TPR repeat; P 90.3 0.36 7.7E-06 40.8 4.0 52 5-76 12-64 (69)
458 PRK10803 tol-pal system protei 90.3 1.4 3E-05 48.5 9.5 91 6-131 153-243 (263)
459 PF03486 HI0933_like: HI0933-l 90.3 0.81 1.8E-05 53.7 8.2 81 922-1010 83-166 (409)
460 TIGR02552 LcrH_SycD type III s 90.3 2.1 4.6E-05 41.3 10.0 81 625-705 18-111 (135)
461 TIGR00292 thiazole biosynthesi 90.3 3.8 8.3E-05 44.8 13.0 123 948-1072 100-251 (254)
462 PRK12769 putative oxidoreducta 90.1 0.73 1.6E-05 57.9 8.2 88 795-898 469-585 (654)
463 TIGR02462 pyranose_ox pyranose 90.1 0.93 2E-05 55.0 8.7 57 957-1014 223-283 (544)
464 PLN02268 probable polyamine ox 90.1 0.097 2.1E-06 62.3 0.4 34 796-829 2-40 (435)
465 COG2081 Predicted flavoprotein 90.1 1.1 2.4E-05 51.0 8.6 53 842-896 111-166 (408)
466 TIGR03862 flavo_PP4765 unchara 90.0 0.79 1.7E-05 52.9 7.6 55 842-897 86-141 (376)
467 TIGR02795 tol_pal_ybgF tol-pal 89.9 1.2 2.5E-05 41.8 7.6 80 4-100 10-100 (119)
468 KOG1585|consensus 89.9 16 0.00035 38.9 16.0 152 173-353 33-189 (308)
469 TIGR01318 gltD_gamma_fam gluta 89.9 0.64 1.4E-05 55.8 7.1 88 795-898 283-399 (467)
470 KOG1276|consensus 89.8 0.11 2.4E-06 58.8 0.5 37 794-830 11-54 (491)
471 PRK12814 putative NADPH-depend 89.8 0.48 1E-05 59.4 6.1 88 795-898 324-438 (652)
472 PTZ00363 rab-GDP dissociation 89.8 2.2 4.7E-05 50.7 11.2 60 947-1012 231-292 (443)
473 PF13738 Pyr_redox_3: Pyridine 89.7 0.59 1.3E-05 49.0 5.9 61 947-1013 81-143 (203)
474 PRK12416 protoporphyrinogen ox 89.6 0.11 2.4E-06 62.4 0.2 50 950-1007 228-277 (463)
475 COG3380 Predicted NAD/FAD-depe 89.5 0.12 2.6E-06 55.2 0.5 31 1041-1072 299-329 (331)
476 COG1233 Phytoene dehydrogenase 89.5 0.13 2.7E-06 62.2 0.7 56 947-1008 223-279 (487)
477 PRK02603 photosystem I assembl 89.4 13 0.00029 37.7 15.6 46 605-650 8-61 (172)
478 COG0492 TrxB Thioredoxin reduc 89.4 0.86 1.9E-05 51.2 7.1 85 796-898 145-239 (305)
479 KOG1174|consensus 89.3 3.2 6.9E-05 47.0 11.2 134 629-762 339-499 (564)
480 KOG1156|consensus 89.3 7.2 0.00016 46.8 14.6 213 62-296 7-263 (700)
481 PRK01438 murD UDP-N-acetylmura 89.3 0.26 5.6E-06 59.5 3.2 71 794-898 16-91 (480)
482 TIGR02485 CobZ_N-term precorri 89.3 1.1 2.5E-05 53.1 8.6 97 799-895 1-181 (432)
483 PF12234 Rav1p_C: RAVE protein 89.2 11 0.00024 46.3 16.6 197 576-777 341-558 (631)
484 KOG2665|consensus 89.2 0.76 1.6E-05 50.1 6.1 66 954-1026 202-270 (453)
485 KOG2852|consensus 89.2 0.37 8E-06 51.9 3.7 49 849-897 155-208 (380)
486 PF10602 RPN7: 26S proteasome 89.2 2.8 6.2E-05 43.1 10.2 83 51-133 37-141 (177)
487 KOG1125|consensus 89.2 7.1 0.00015 46.3 14.3 240 5-338 294-563 (579)
488 KOG0550|consensus 89.1 5.5 0.00012 45.3 12.8 143 52-194 251-437 (486)
489 PRK15331 chaperone protein Sic 88.8 8.5 0.00018 38.7 12.7 149 1-246 1-151 (165)
490 PLN02529 lysine-specific histo 88.3 0.19 4.1E-06 62.9 1.1 37 794-830 160-201 (738)
491 COG1251 NirB NAD(P)H-nitrite r 88.3 0.51 1.1E-05 57.3 4.5 95 794-898 145-244 (793)
492 TIGR02032 GG-red-SF geranylger 88.2 3 6.6E-05 46.2 10.7 57 948-1009 91-147 (295)
493 PF04840 Vps16_C: Vps16, C-ter 88.2 4 8.7E-05 46.2 11.4 114 5-119 186-305 (319)
494 KOG0685|consensus 88.0 0.17 3.6E-06 58.4 0.3 34 796-829 23-62 (498)
495 TIGR00562 proto_IX_ox protopor 87.6 0.18 3.8E-06 60.6 0.2 34 795-828 3-45 (462)
496 TIGR03862 flavo_PP4765 unchara 87.5 3 6.6E-05 48.2 10.2 81 922-1010 60-141 (376)
497 PF12688 TPR_5: Tetratrico pep 87.5 4.8 0.0001 38.5 9.9 79 51-129 2-99 (120)
498 KOG1173|consensus 87.5 2.8 6.1E-05 49.4 9.7 123 9-131 359-515 (611)
499 KOG0543|consensus 87.4 1.8 4E-05 49.1 8.0 85 50-134 208-320 (397)
500 PRK13984 putative oxidoreducta 87.3 0.83 1.8E-05 56.9 5.9 21 795-815 419-439 (604)
No 1
>KOG3617|consensus
Probab=100.00 E-value=4.5e-65 Score=573.75 Aligned_cols=365 Identities=43% Similarity=0.711 Sum_probs=319.8
Q ss_pred hHHhhhcCCHHHHHHHHHHcCcccchhhhHhhhcHHHHHHHhhcCCChHHHHHHHHHHHhccCHHHHHHHHHHhhChhhh
Q psy14927 3 EEETMKNGDIDRAIRMFEKAETHQQHVPRMLLENTDKLEKYIIQSKDPVLLKWWAQYIESTEDMDLAMKYYEEARDYLSM 82 (1074)
Q Consensus 3 ~~~~~~~g~~~eA~~~Ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~~~~ 82 (1074)
-.+||..++++.|+.+|||+++|.++|+||+.+++..+++|+++.++|.||+|||+|+|+.|+++.|+.+|..|+||.++
T Consensus 865 A~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~ 944 (1416)
T KOG3617|consen 865 AKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSM 944 (1416)
T ss_pred HHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhh
Confidence 35899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHhhccCCHHHHHHHHHhcCChHHHHHHHHHHHhcCChHHHHHHHHHhCChHHHHHHHHHhCchHHHHHHhhhcCchhH
Q psy14927 83 VRVLCFLQDFSRAAELANASGDTAAAYHLARQYENSGQFDEAIHFYSVAGSCGNAVRLCKEQALDDQLWNLALSAGPSEQ 162 (1074)
Q Consensus 83 vr~l~~~~~~~~a~~i~~~~~~~~~~~~la~~~~~~g~~~~Ai~~y~~a~~~~~A~~la~~~~~~~~~~~l~~~~~~~~~ 162 (1074)
||++|.+|++++|.+|+++++|.++||++||+||+.|++.+||.||++|+.|.+||||||+|++.|+++++++.++++++
T Consensus 945 VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~ 1024 (1416)
T KOG3617|consen 945 VRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDL 1024 (1416)
T ss_pred eeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcc-C-ChhHHHHHHHHhCChHHHHHHHHhhcc--------------CCc------------------------
Q psy14927 163 IEAATYLET-I-EPDKAVLLYHKAGALHKALDLAFKLTL--------------SNS------------------------ 202 (1074)
Q Consensus 163 ~~~A~~~e~-~-~~~~A~~ly~kaG~~~kAl~l~~~~~~--------------~~~------------------------ 202 (1074)
..+|+|||+ + ++.+||+||||||.+.|||+++|..+. +|.
T Consensus 1025 v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~ 1104 (1416)
T KOG3617|consen 1025 VSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLC 1104 (1416)
T ss_pred HHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 999999999 5 589999999999999999999998652 110
Q ss_pred --------------------------------c----------------h------H-----------HHHHHHHHHhcC
Q psy14927 203 --------------------------------G----------------L------V-----------FQIKAMKCLLKS 217 (1074)
Q Consensus 203 --------------------------------~----------------~------~-----------~~~~a~k~l~~~ 217 (1074)
+ + | .+++||++|+||
T Consensus 1105 ~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGdKl~AMraLLKS 1184 (1416)
T KOG3617|consen 1105 LAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGDKLSAMRALLKS 1184 (1416)
T ss_pred HHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhhHHHHHHHHHhc
Confidence 0 0 1 268999999999
Q ss_pred CChhhHHHhhhhcchHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHhHHHHhhcCHHHHHHHHH
Q psy14927 218 GDTNKIIFFAGVSRMKEIYVMAANYLQSSDWKSQPELLKSIISFYSKGKAPHLLANFYVSCAQVEIDEFGNYEKGLGALN 297 (1074)
Q Consensus 218 ~~~~~~i~~a~~~r~~~l~~~aa~yl~~~~~~~~~~~~~~i~~~Y~k~~~~~~aa~~~~~~a~~ei~e~~~y~~a~~~l~ 297 (1074)
||++||+|||+.+|++|||+|||||||++||+.+|+.+|+|+.||+|+++|+.+|+||.+|||.||+|+++|+||+.+|.
T Consensus 1185 Gdt~KI~FFAn~sRqkEiYImAANyLQtlDWq~~pq~mK~I~tFYTKgqafd~LanFY~~cAqiEiee~q~ydKa~gAl~ 1264 (1416)
T KOG3617|consen 1185 GDTQKIRFFANTSRQKEIYIMAANYLQTLDWQDNPQTMKDIETFYTKGQAFDHLANFYKSCAQIEIEELQTYDKAMGALE 1264 (1416)
T ss_pred CCcceEEEEeeccccceeeeehhhhhhhcccccChHHHhhhHhhhhcchhHHHHHHHHHHHHHhhHHHHhhhhHHhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCchHH-----HHHHHHHHHHHHHHh----hcCChHHHhhHHHHHHHHHhhcc--CcchhH--HHHHHHH
Q psy14927 298 EAKRCLLKHNDSMYET-----LKSSVVEKLAEVEID----EFGNYEKGLGALNEAKRCLLKHN--DSMYET--LKSSVVE 364 (1074)
Q Consensus 298 ~a~~~l~~~~~~~~~~-----~~~~~~~~~~~~~~~----~~~~~~~a~~~~~~~~~~~~~~~--~~~~~i--~~~~~~~ 364 (1074)
+|.+||.|+..+..++ |++.+.. +|..+. ...||...|++..-.... | +..+|+ +.--.||
T Consensus 1265 eA~kCl~ka~~k~~~~t~l~~Lq~~~a~--vk~~l~~~q~~~eD~~~~i~qc~~llee----p~ld~~Ir~~~~~a~lie 1338 (1416)
T KOG3617|consen 1265 EAAKCLLKAEQKNMSTTGLDALQEDLAK--VKVQLRKLQIMKEDAADGIRQCTTLLEE----PILDDIIRCTRLFALLIE 1338 (1416)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHHH--HHHHHHHHHHhhhhHHHHHHHHHHHhhC----cCCCCcchhHHHHHHHHH
Confidence 9999999987543322 3333333 333333 137888887754443332 2 223332 1123567
Q ss_pred HHHHHhhhh
Q psy14927 365 KIAEVDKYL 373 (1074)
Q Consensus 365 ~~~~~~~~~ 373 (1074)
++....+|-
T Consensus 1339 ~~v~~k~y~ 1347 (1416)
T KOG3617|consen 1339 DHVSRKNYK 1347 (1416)
T ss_pred HHHhhhhcc
Confidence 765444444
No 2
>KOG3616|consensus
Probab=100.00 E-value=8.4e-55 Score=484.53 Aligned_cols=577 Identities=17% Similarity=0.187 Sum_probs=487.2
Q ss_pred cHHHHHHHhhc----CCChHHHHHHHHHHHhccCHHHHHHHHHHhhChhhhhhHhhccCCHHHHHHHHHhcCChHHHH--
Q psy14927 36 NTDKLEKYIIQ----SKDPVLLKWWAQYIESTEDMDLAMKYYEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAAY-- 109 (1074)
Q Consensus 36 ~~~~~~~~~~~----~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~~~~vr~l~~~~~~~~a~~i~~~~~~~~~~~-- 109 (1074)
+|+++..++.+ ++...||..+++.+.+.|++..|.+||.+-||+ ..+|.|.....+ |.+..++.|+.+.-+
T Consensus 459 df~ra~afles~~~~~da~amw~~laelale~~nl~iaercfaai~dv-ak~r~lhd~~ei--adeas~~~ggdgt~fyk 535 (1636)
T KOG3616|consen 459 DFDRATAFLESLEMGPDAEAMWIRLAELALEAGNLFIAERCFAAIGDV-AKARFLHDILEI--ADEASIEIGGDGTDFYK 535 (1636)
T ss_pred chHHHHHHHHhhccCccHHHHHHHHHHHHHHhccchHHHHHHHHHHHH-HHHHHHHHHHHH--HHHHhHhhCCCCchHHH
Confidence 67666666665 566779999999999999999999999999999 889999988888 888888877665432
Q ss_pred ---HHH----------HHHHhcCChHHHHHHHHHhCChHHHHHHHHHhC------chHHHHHHhhhcCchhHHHHHHHHc
Q psy14927 110 ---HLA----------RQYENSGQFDEAIHFYSVAGSCGNAVRLCKEQA------LDDQLWNLALSAGPSEQIEAATYLE 170 (1074)
Q Consensus 110 ---~la----------~~~~~~g~~~~Ai~~y~~a~~~~~A~~la~~~~------~~~~~~~l~~~~~~~~~~~~A~~~e 170 (1074)
++| ++|.++|+.++||-||+..|+|+||+.||+..| +...|+++..++.|+. ++|+.-+
T Consensus 536 vra~lail~kkfk~ae~ifleqn~te~aigmy~~lhkwde~i~lae~~~~p~~eklk~sy~q~l~dt~qd~--ka~elk~ 613 (1636)
T KOG3616|consen 536 VRAMLAILEKKFKEAEMIFLEQNATEEAIGMYQELHKWDEAIALAEAKGHPALEKLKRSYLQALMDTGQDE--KAAELKE 613 (1636)
T ss_pred HHHHHHHHHhhhhHHHHHHHhcccHHHHHHHHHHHHhHHHHHHHHHhcCChHHHHHHHHHHHHHHhcCchh--hhhhhcc
Confidence 333 778899999999999999999999999999998 6778888888899988 8999999
Q ss_pred c-CChhHHHHHHHHhCChHHHHHHHHhhccCCcchHHHHHHHHHHhcCCChhhHHHhhhhcchHHHHHHHHHHHhcCCCC
Q psy14927 171 T-IEPDKAVLLYHKAGALHKALDLAFKLTLSNSGLVFQIKAMKCLLKSGDTNKIIFFAGVSRMKEIYVMAANYLQSSDWK 249 (1074)
Q Consensus 171 ~-~~~~~A~~ly~kaG~~~kAl~l~~~~~~~~~~~~~~~~a~k~l~~~~~~~~~i~~a~~~r~~~l~~~aa~yl~~~~~~ 249 (1074)
+ |+-..|+.||.|+|+|.+|++++++.... +.|.+.+-.++..+.+.+||.+|++.++..
T Consensus 614 sdgd~laaiqlyika~~p~~a~~~a~n~~~l----------------~~de~il~~ia~alik~elydkagdlfeki--- 674 (1636)
T KOG3616|consen 614 SDGDGLAAIQLYIKAGKPAKAARAALNDEEL----------------LADEEILEHIAAALIKGELYDKAGDLFEKI--- 674 (1636)
T ss_pred ccCccHHHHHHHHHcCCchHHHHhhcCHHHh----------------hccHHHHHHHHHHHHhhHHHHhhhhHHHHh---
Confidence 9 78899999999999999999999885433 678889999999999999999999999999
Q ss_pred CChhHHHHHHHHHHccCCHHHHH-----HHHHHHHhHHHHhhcCHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHH
Q psy14927 250 SQPELLKSIISFYSKGKAPHLLA-----NFYVSCAQVEIDEFGNYEKGLGALNEAKRCLLKHNDSMYETLKSSVVEKLAE 324 (1074)
Q Consensus 250 ~~~~~~~~i~~~Y~k~~~~~~aa-----~~~~~~a~~ei~e~~~y~~a~~~l~~a~~~l~~~~~~~~~~~~~~~~~~~~~ 324 (1074)
+++.+++++|.|+.+|.+|. +|++.+...| ++||++....++|+.|++|+.++++.++
T Consensus 675 ---~d~dkale~fkkgdaf~kaielarfafp~evv~le-e~wg~hl~~~~q~daainhfiea~~~~k------------- 737 (1636)
T KOG3616|consen 675 ---HDFDKALECFKKGDAFGKAIELARFAFPEEVVKLE-EAWGDHLEQIGQLDAAINHFIEANCLIK------------- 737 (1636)
T ss_pred ---hCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHH-HHHhHHHHHHHhHHHHHHHHHHhhhHHH-------------
Confidence 88899999999999999977 7899999999 9999999999999999999999998877
Q ss_pred HHHhhcCChHHHhhHHHHHHHHHhhccCcchhHHHHHHHHHHHHHhhhhhccccccccccCCceEEeccchhhccHHHHh
Q psy14927 325 VEIDEFGNYEKGLGALNEAKRCLLKHNDSMYETLKSSVVEKIAEVDKYLEMKRNQSFRSSNTDIILPVEKWTLLSLARVL 404 (1074)
Q Consensus 325 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (1074)
++ ++++.+++||+++. ||. .+++.+-..+|+..
T Consensus 738 ---ai------------eaai~akew~kai~-ild--niqdqk~~s~yy~~----------------------------- 770 (1636)
T KOG3616|consen 738 ---AI------------EAAIGAKEWKKAIS-ILD--NIQDQKTASGYYGE----------------------------- 770 (1636)
T ss_pred ---HH------------HHHhhhhhhhhhHh-HHH--HhhhhccccccchH-----------------------------
Confidence 64 89999999999997 888 67766533444422
Q ss_pred ccccccccccccccccccccccCCcceEEEEeccCCCcccccccccCCCcEEEEeeccCccchhhhcCCCcceEEEEEEC
Q psy14927 405 EGIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPGIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDK 484 (1074)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~v~~~~~~~~~ra~~~~~~~G~~Kli~~~ 484 (1074)
++.|+...| ++++.+..|..
T Consensus 771 ---------------------------------------iadhyan~~-dfe~ae~lf~e-------------------- 790 (1636)
T KOG3616|consen 771 ---------------------------------------IADHYANKG-DFEIAEELFTE-------------------- 790 (1636)
T ss_pred ---------------------------------------HHHHhccch-hHHHHHHHHHh--------------------
Confidence 556666666 45544433331
Q ss_pred CCCcEEEEEEeCCChhHHHHHHHHHHHcCCCHHHHhhhcccCCccccccccccCCcccccCCCchHHHhhcchhhHHhcc
Q psy14927 485 LTDKVLGVHIIGPAAGELINEAVLAMEYGASCEDVARTCHAHPTVCVEKNDTLGGTCLNVGCIPSKALLNNSHYYHMAHS 564 (1074)
Q Consensus 485 ~~~~ilG~~iiG~~a~eli~~~a~a~~~~~~~~~l~~~~~~hPt~s~e~~~~~ggtc~n~GCvpkk~l~~aa~~~~~~~~ 564 (1074)
|.--.+.|.++..+-+|.. ..++...|+.+..+-+.++-.|.++.+++++
T Consensus 791 -----------~~~~~dai~my~k~~kw~d-------------------a~kla~e~~~~e~t~~~yiakaedldehgkf 840 (1636)
T KOG3616|consen 791 -----------ADLFKDAIDMYGKAGKWED-------------------AFKLAEECHGPEATISLYIAKAEDLDEHGKF 840 (1636)
T ss_pred -----------cchhHHHHHHHhccccHHH-------------------HHHHHHHhcCchhHHHHHHHhHHhHHhhcch
Confidence 2333445555555543332 4577888999999999999999999999999
Q ss_pred CccccCCeeccCcccCHHHHHHHH--HHHHHHHHHHHHHHhhhCccchhhHHHHHHHhhhhHHHHHHHHHHHHhhhcHHH
Q psy14927 565 GDMKARGIEVEGVKLNLETMMGTK--SAAVKALTGGIAHLFKSNKALKIITKQIILILIIYRVLLKWWAQYIESTEDMDL 642 (1074)
Q Consensus 565 ~~a~~~G~~~~~~~~~w~~~~~~~--~~~i~~l~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~l~~~~a~~~e~~~~~~~ 642 (1074)
.++++++|++++|+..+.||.+++ |+||+.+..+++++|.+++.+ +|.-++++|+.++
T Consensus 841 ~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~--------------------f~~e~e~~g~lka 900 (1636)
T KOG3616|consen 841 AEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKH--------------------FAKELEAEGDLKA 900 (1636)
T ss_pred hhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHH--------------------HHHHHHhccChhH
Confidence 999999999999999999999998 999999999999999998888 9999999999999
Q ss_pred HHHHHHHhhCHHHHHHHHHHcCCHHHHHHHHHhcCCcHHHHHH-------------------------------------
Q psy14927 643 AMKYYEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAAYHL------------------------------------- 685 (1074)
Q Consensus 643 A~~~y~~ag~~~~ai~~~~~~~~~~~a~~v~~~~~~~~~~~~~------------------------------------- 685 (1074)
|++||++||+|+.+|+||...+.|++|++|++..++....+++
T Consensus 901 ae~~flea~d~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd 980 (1636)
T KOG3616|consen 901 AEEHFLEAGDFKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFD 980 (1636)
T ss_pred HHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchh
Confidence 9999999999999999999999999999999877766665533
Q ss_pred ---------------------HHHHHhcCCHHHH-------------------------HHHHHHcC-CHHHHHHH---h
Q psy14927 686 ---------------------ARQYENSGQFDEA-------------------------IHFYSVAG-SCGNAVRL---C 715 (1074)
Q Consensus 686 ---------------------A~~~~~~g~~~~A-------------------------~~~~~kag-~~~~Av~m---a 715 (1074)
|.+|++.|.++.| ..-|+++| +|++||.| .
T Consensus 981 ~afdlari~~k~k~~~vhlk~a~~ledegk~edaskhyveaiklntynitwcqavpsrfd~e~ir~gnkpe~av~mfi~d 1060 (1636)
T KOG3616|consen 981 FAFDLARIAAKDKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLNTYNITWCQAVPSRFDAEFIRAGNKPEEAVEMFIHD 1060 (1636)
T ss_pred hHHHHHHHhhhccCccchhHHhhhhhhccchhhhhHhhHHHhhcccccchhhhcccchhhHHHHHcCCChHHHHHHhhhc
Confidence 9999999999999 55566777 99999999 6
Q ss_pred ccHHHHHHHHHHhCCcccHHHHHHHHHHH-------------HHcCCHHHHHHHHHHhCCHHHHHHHHHHcCCCCchhh-
Q psy14927 716 GQLDAVESIASELNVQSDQDLILKCASYF-------------ARREHHDRAVQMYAIARRYDQALSLIQTKHVPLSEEL- 781 (1074)
Q Consensus 716 ~~w~~a~~~A~~~~~~~~~~~~~~~a~~~-------------~~~~~~~~Ai~~y~~ag~~~~Ai~~~~~~~~~~~~~~- 781 (1074)
++|..|.|+|+.|+|...+++|+++|+.. +++++|+.+..+|..++.|.+|+|+|+.|.| .+-.
T Consensus 1061 ndwa~aervae~h~~~~l~dv~tgqar~aiee~d~~kae~fllrankp~i~l~yf~e~~lw~dalri~kdylp--~q~a~ 1138 (1636)
T KOG3616|consen 1061 NDWAAAERVAEAHCEDLLADVLTGQARGAIEEGDFLKAEGFLLRANKPDIALNYFIEAELWPDALRIAKDYLP--HQAAA 1138 (1636)
T ss_pred ccHHHHHHHHHhhChhhhHHHHhhhhhccccccchhhhhhheeecCCCchHHHHHHHhccChHHHHHHHhhCh--hHHHH
Confidence 99999999999999999999999999865 6788889999999999999999999999988 3333
Q ss_pred hhcCCCCCCCccchhhhhhccccchHHHHHHHhhhhhhhcc
Q psy14927 782 ADLLVPPESDDQRQVVLNTLGNCAAVQANYHLATKLFTQAG 822 (1074)
Q Consensus 782 ~~~~~~~~~~~~k~~VviiGgG~AGl~aA~~la~~l~e~~~ 822 (1074)
+|.+++ |. -+.-|..|...-...++ -++..+
T Consensus 1139 iqeeye------k~---~~k~gargvd~fvaqak-~weq~g 1169 (1636)
T KOG3616|consen 1139 IQEEYE------KE---ALKKGARGVDGFVAQAK-EWEQAG 1169 (1636)
T ss_pred HHHHHH------HH---HHhccccccHHHHHHHH-HHHhcc
Confidence 666662 22 23345566655555555 455544
No 3
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=100.00 E-value=7.3e-37 Score=353.19 Aligned_cols=210 Identities=40% Similarity=0.633 Sum_probs=179.6
Q ss_pred CeEEEeeeEEEecCCeEEEEeCCCCeeEEEcCeEEEccCCCCCCCCCCCCCCcceechhhHhcchH--------------
Q psy14927 856 KVTQLNGHGKITGPNTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGIEVDEETIVSSTGALSLKK-------------- 921 (1074)
Q Consensus 856 gV~~~~g~v~~id~~~~~v~~~~G~~~~i~~d~lIIATG~~p~~ipgi~~~~~~v~t~~~~~~~~~-------------- 921 (1074)
||+++.|++.+++++++.|... +.++++++++|||||++|..+|+.+.++..++++++.+...+
T Consensus 108 ~V~vi~G~a~f~~~~~v~V~~~--~~~~~~a~~iiIATGS~p~~~~~~~~~~~~~~~s~~~l~~~~lP~~lvIiGgG~IG 185 (454)
T COG1249 108 GVDVIRGEARFVDPHTVEVTGE--DKETITADNIIIATGSRPRIPPGPGIDGARILDSSDALFLLELPKSLVIVGGGYIG 185 (454)
T ss_pred CCEEEEEEEEECCCCEEEEcCC--CceEEEeCEEEEcCCCCCcCCCCCCCCCCeEEechhhcccccCCCEEEEECCCHHH
Confidence 3444455555555555555443 236899999999999999766655556667888888665555
Q ss_pred ---hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEEeeccCCCCceEEE
Q psy14927 922 ---GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELS 998 (1074)
Q Consensus 922 ---A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~ 998 (1074)
|..++++|.+|||+++.++++ |.+|+++++.+.+.|++.||++++++.+++++..++++.+++++ |.+.+++
T Consensus 186 lE~a~~~~~LG~~VTiie~~~~iL-p~~D~ei~~~~~~~l~~~gv~i~~~~~v~~~~~~~~~v~v~~~~----g~~~~~~ 260 (454)
T COG1249 186 LEFASVFAALGSKVTVVERGDRIL-PGEDPEISKELTKQLEKGGVKILLNTKVTAVEKKDDGVLVTLED----GEGGTIE 260 (454)
T ss_pred HHHHHHHHHcCCcEEEEecCCCCC-CcCCHHHHHHHHHHHHhCCeEEEccceEEEEEecCCeEEEEEec----CCCCEEE
Confidence 999999999999999999999 89999999999999999999999999999999876667777776 3334899
Q ss_pred cCEEEEccCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEEecccCCCCCcHHHHHHHHHHHHHHhhC
Q psy14927 999 CDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGPMLAHKAEDEGIVCVEGIAG 1072 (1074)
Q Consensus 999 ~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~~~~~~~~~A~~~G~~aA~~I~~ 1072 (1074)
+|.|++|+|++||++.+++++.|+++|++|+|.||..++|++|||||+|||+++|.+++.|..+|++||.||+|
T Consensus 261 ad~vLvAiGR~Pn~~~LgLe~~Gv~~~~rg~I~VD~~~~Tnvp~IyA~GDV~~~~~Lah~A~~eg~iaa~~i~g 334 (454)
T COG1249 261 ADAVLVAIGRKPNTDGLGLENAGVELDDRGFIKVDDQMTTNVPGIYAIGDVIGGPMLAHVAMAEGRIAAENIAG 334 (454)
T ss_pred eeEEEEccCCccCCCCCChhhcCceECCCCCEEeCCccccCCCCEEEeeccCCCcccHhHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999888889999999999999988999999999999999996
No 4
>KOG0405|consensus
Probab=100.00 E-value=7.2e-37 Score=320.87 Aligned_cols=311 Identities=26% Similarity=0.408 Sum_probs=259.2
Q ss_pred EEEEEeCCChhHHHHHHHHHHHcCCCHHHHhhhcccCCccccccccccCCcccccCCCchHHHhhcchhhHHhccCcccc
Q psy14927 490 LGVHIIGPAAGELINEAVLAMEYGASCEDVARTCHAHPTVCVEKNDTLGGTCLNVGCIPSKALLNNSHYYHMAHSGDMKA 569 (1074)
Q Consensus 490 lG~~iiG~~a~eli~~~a~a~~~~~~~~~l~~~~~~hPt~s~e~~~~~ggtc~n~GCvpkk~l~~aa~~~~~~~~~~a~~ 569 (1074)
...-+||.+++.+. .+..|..+|.++ .-+|+-..+||||+|+||||||+||+++.+.+..+ |+++
T Consensus 21 fDylvIGgGSGGva-sARrAa~~GAkv------------~l~E~~f~lGGTCVn~GCVPKKvm~~~a~~~~~~~--da~~ 85 (478)
T KOG0405|consen 21 FDYLVIGGGSGGVA-SARRAASHGAKV------------ALCELPFGLGGTCVNVGCVPKKVMWYAADYSEEME--DAKD 85 (478)
T ss_pred cceEEEcCCcchhH-HhHHHHhcCceE------------EEEecCCCcCceEEeeccccceeEEehhhhhHHhh--hhhh
Confidence 34567899999988 466777888754 33455458999999999999999999999988776 5899
Q ss_pred CCeecc-CcccCHHHHHHHHHHHHHHHHHHHHHHhhhCccchhhHHHHHHHhhhhHHHHHHHHHHHHhhhcHHHHHHHHH
Q psy14927 570 RGIEVE-GVKLNLETMMGTKSAAVKALTGGIAHLFKSNKALKIITKQIILILIIYRVLLKWWAQYIESTEDMDLAMKYYE 648 (1074)
Q Consensus 570 ~G~~~~-~~~~~w~~~~~~~~~~i~~l~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~l~~~~a~~~e~~~~~~~A~~~y~ 648 (1074)
|||..+ .++|||.++++.||++|.+||..|+++|.+.+|+ +++|||+|.
T Consensus 86 yG~~~~~~~~fdW~~ik~krdayi~RLngIY~~~L~k~~V~----------------~i~G~a~f~-------------- 135 (478)
T KOG0405|consen 86 YGFPINEEGSFDWKVIKQKRDAYILRLNGIYKRNLAKAAVK----------------LIEGRARFV-------------- 135 (478)
T ss_pred cCCccccccCCcHHHHHhhhhHHHHHHHHHHHhhcccccee----------------EEeeeEEEc--------------
Confidence 999985 5999999999999999999999999999888888 444444332
Q ss_pred HhhCHHHHHHHHHHcCCHHHHHHHHHhcCCcHHHHHHHHHHHhcCCHHHHHHHHHHcCCHHHHHHHhccHHHHHHHHHHh
Q psy14927 649 EARDYLSMVRVLCFLQDFSRAAELANASGDTAAAYHLARQYENSGQFDEAIHFYSVAGSCGNAVRLCGQLDAVESIASEL 728 (1074)
Q Consensus 649 ~ag~~~~ai~~~~~~~~~~~a~~v~~~~~~~~~~~~~A~~~~~~g~~~~A~~~~~kag~~~~Av~ma~~w~~a~~~A~~~ 728 (1074)
T Consensus 136 -------------------------------------------------------------------------------- 135 (478)
T KOG0405|consen 136 -------------------------------------------------------------------------------- 135 (478)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcccHHHHHHHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHcCCCCchhhhhcCCCCCCCccchhhhhhccccchHH
Q psy14927 729 NVQSDQDLILKCASYFARREHHDRAVQMYAIARRYDQALSLIQTKHVPLSEELADLLVPPESDDQRQVVLNTLGNCAAVQ 808 (1074)
Q Consensus 729 ~~~~~~~~~~~~a~~~~~~~~~~~Ai~~y~~ag~~~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~k~~VviiGgG~AGl~ 808 (1074)
T Consensus 136 -------------------------------------------------------------------------------- 135 (478)
T KOG0405|consen 136 -------------------------------------------------------------------------------- 135 (478)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhhhhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEeeeEEEecCCeEEEEeCCCCeeEEEcCe
Q psy14927 809 ANYHLATKLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEVKTKN 888 (1074)
Q Consensus 809 aA~~la~~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~v~~id~~~~~v~~~~G~~~~i~~d~ 888 (1074)
++..+.|...+|....+++.+
T Consensus 136 -----------------------------------------------------------~~~~v~V~~~d~~~~~Ytak~ 156 (478)
T KOG0405|consen 136 -----------------------------------------------------------SPGEVEVEVNDGTKIVYTAKH 156 (478)
T ss_pred -----------------------------------------------------------CCCceEEEecCCeeEEEecce
Confidence 222233333344334588999
Q ss_pred EEEccCCCCCCCCCCCCCCcceechhhHhcchH-----------------hhHHhhcCCcEEEEecCCccCCCCCCHHHH
Q psy14927 889 ILIATGSEVTPFPGIEVDEETIVSSTGALSLKK-----------------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVA 951 (1074)
Q Consensus 889 lIIATG~~p~~ipgi~~~~~~v~t~~~~~~~~~-----------------A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~ 951 (1074)
++||||++|. +|.+|+ .+..++++.++.+.+ |..++.+|.+++++-|.+.++ +.||+.++
T Consensus 157 iLIAtGg~p~-~PnIpG-~E~gidSDgff~Lee~Pkr~vvvGaGYIavE~Agi~~gLgsethlfiR~~kvL-R~FD~~i~ 233 (478)
T KOG0405|consen 157 ILIATGGRPI-IPNIPG-AELGIDSDGFFDLEEQPKRVVVVGAGYIAVEFAGIFAGLGSETHLFIRQEKVL-RGFDEMIS 233 (478)
T ss_pred EEEEeCCccC-CCCCCc-hhhccccccccchhhcCceEEEEccceEEEEhhhHHhhcCCeeEEEEecchhh-cchhHHHH
Confidence 9999999983 455554 356778888888877 888999999999999999999 89999999
Q ss_pred HHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccCCcccCCccCccccCcccCCCCCee
Q psy14927 952 KQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVP 1031 (1074)
Q Consensus 952 ~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~ 1031 (1074)
..+.+.|+..||+++.++.++++....++..+.... .+....+|.++||+|+.|++.-|++++.|+++|..|.|.
T Consensus 234 ~~v~~~~~~~ginvh~~s~~~~v~K~~~g~~~~i~~-----~~~i~~vd~llwAiGR~Pntk~L~le~vGVk~~~~g~Ii 308 (478)
T KOG0405|consen 234 DLVTEHLEGRGINVHKNSSVTKVIKTDDGLELVITS-----HGTIEDVDTLLWAIGRKPNTKGLNLENVGVKTDKNGAII 308 (478)
T ss_pred HHHHHHhhhcceeecccccceeeeecCCCceEEEEe-----ccccccccEEEEEecCCCCcccccchhcceeeCCCCCEE
Confidence 999999999999999999999998876663333222 134455999999999999999999999999999999999
Q ss_pred eCCCCCCCCCCEEEecccCCCCCcHHHHHHHHHHHHHHhhC
Q psy14927 1032 VNSRFQTVIPNIFAIGDCIHGPMLAHKAEDEGIVCVEGIAG 1072 (1074)
Q Consensus 1032 Vd~~~~ts~~~IyAiGD~~~~~~~~~~A~~~G~~aA~~I~~ 1072 (1074)
||++.+||+|+||++||+++.-.+...|+..|+..++.+++
T Consensus 309 vDeYq~Tnvp~I~avGDv~gk~~LTPVAiaagr~la~rlF~ 349 (478)
T KOG0405|consen 309 VDEYQNTNVPSIWAVGDVTGKINLTPVAIAAGRKLANRLFG 349 (478)
T ss_pred EeccccCCCCceEEeccccCcEecchHHHhhhhhHHHHhhc
Confidence 99999999999999999999888999999999999999987
No 5
>KOG1335|consensus
Probab=100.00 E-value=9.4e-36 Score=316.52 Aligned_cols=319 Identities=61% Similarity=0.984 Sum_probs=278.6
Q ss_pred EEEEeCCChhHHHHHHHHHHHcCCCHHHHhhhcccCCccccccccccCCcccccCCCchHHHhhcchhhHHhccCccccC
Q psy14927 491 GVHIIGPAAGELINEAVLAMEYGASCEDVARTCHAHPTVCVEKNDTLGGTCLNVGCIPSKALLNNSHYYHMAHSGDMKAR 570 (1074)
Q Consensus 491 G~~iiG~~a~eli~~~a~a~~~~~~~~~l~~~~~~hPt~s~e~~~~~ggtc~n~GCvpkk~l~~aa~~~~~~~~~~a~~~ 570 (1074)
.+.|||.+.+..+ .+..|.+.|+ -|..+|....+||||+|+||||+|.|++.+.+.+..++.+++..
T Consensus 41 DvvvIG~GpGGyv-AAikAaQlGl------------kTacvEkr~~LGGTcLnvGcIPSKALL~nSh~yh~~q~~~~~~r 107 (506)
T KOG1335|consen 41 DVVVIGGGPGGYV-AAIKAAQLGL------------KTACVEKRGTLGGTCLNVGCIPSKALLNNSHLYHEAQHEDFASR 107 (506)
T ss_pred CEEEECCCCchHH-HHHHHHHhcc------------eeEEEeccCccCceeeeccccccHHHhhhhHHHHHHhhhHHHhc
Confidence 4678899999998 4556668998 56889988999999999999999999999999998876588999
Q ss_pred CeeccCcccCHHHHHHHHHHHHHHHHHHHHHHhhhCccchhhHHHHHHHhhhhHHHHHHHHHHHHhhhcHHHHHHHHHHh
Q psy14927 571 GIEVEGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKALKIITKQIILILIIYRVLLKWWAQYIESTEDMDLAMKYYEEA 650 (1074)
Q Consensus 571 G~~~~~~~~~w~~~~~~~~~~i~~l~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a 650 (1074)
|+.+....+|.+.+++++++.|+.|.++++.++++++|+ ++.|
T Consensus 108 Gi~vs~~~~dl~~~~~~k~~~vk~Lt~gi~~lfkknkV~----------------~~kG--------------------- 150 (506)
T KOG1335|consen 108 GIDVSSVSLDLQAMMKAKDNAVKQLTGGIENLFKKNKVT----------------YVKG--------------------- 150 (506)
T ss_pred CccccceecCHHHHHHHHHHHHHHHhhHHHHHhhhcCeE----------------EEee---------------------
Confidence 999888888988888888888888888888777777777 2222
Q ss_pred hCHHHHHHHHHHcCCHHHHHHHHHhcCCcHHHHHHHHHHHhcCCHHHHHHHHHHcCCHHHHHHHhccHHHHHHHHHHhCC
Q psy14927 651 RDYLSMVRVLCFLQDFSRAAELANASGDTAAAYHLARQYENSGQFDEAIHFYSVAGSCGNAVRLCGQLDAVESIASELNV 730 (1074)
Q Consensus 651 g~~~~ai~~~~~~~~~~~a~~v~~~~~~~~~~~~~A~~~~~~g~~~~A~~~~~kag~~~~Av~ma~~w~~a~~~A~~~~~ 730 (1074)
T Consensus 151 -------------------------------------------------------------------------------- 150 (506)
T KOG1335|consen 151 -------------------------------------------------------------------------------- 150 (506)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHcCCCCchhhhhcCCCCCCCccchhhhhhccccchHHHH
Q psy14927 731 QSDQDLILKCASYFARREHHDRAVQMYAIARRYDQALSLIQTKHVPLSEELADLLVPPESDDQRQVVLNTLGNCAAVQAN 810 (1074)
Q Consensus 731 ~~~~~~~~~~a~~~~~~~~~~~Ai~~y~~ag~~~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~k~~VviiGgG~AGl~aA 810 (1074)
T Consensus 151 -------------------------------------------------------------------------------- 150 (506)
T KOG1335|consen 151 -------------------------------------------------------------------------------- 150 (506)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhhhhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEeeeEEEecCCeEEEEeCCCCeeEEEcCeEE
Q psy14927 811 YHLATKLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEVKTKNIL 890 (1074)
Q Consensus 811 ~~la~~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~v~~id~~~~~v~~~~G~~~~i~~d~lI 890 (1074)
...+++|..+++...||+...+.++++|
T Consensus 151 ----------------------------------------------------~gsf~~p~~V~v~k~dg~~~ii~aKnIi 178 (506)
T KOG1335|consen 151 ----------------------------------------------------FGSFLDPNKVSVKKIDGEDQIIKAKNII 178 (506)
T ss_pred ----------------------------------------------------eEeecCCceEEEeccCCCceEEeeeeEE
Confidence 2234444445555555555678899999
Q ss_pred EccCCCCCCCCCCCCCCcceechhhHhcchH-----------------hhHHhhcCCcEEEEecCCccCCCCCCHHHHHH
Q psy14927 891 IATGSEVTPFPGIEVDEETIVSSTGALSLKK-----------------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQ 953 (1074)
Q Consensus 891 IATG~~p~~ipgi~~~~~~v~t~~~~~~~~~-----------------A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~ 953 (1074)
|||||.-.++||+.-+...+++++..+.+.. +..+.++|.+||+++..+.+. +.+|++++..
T Consensus 179 iATGSeV~~~PGI~IDekkIVSStgALsL~~vPk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~-~~mD~Eisk~ 257 (506)
T KOG1335|consen 179 IATGSEVTPFPGITIDEKKIVSSTGALSLKEVPKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIG-GVMDGEISKA 257 (506)
T ss_pred EEeCCccCCCCCeEecCceEEecCCccchhhCcceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhc-cccCHHHHHH
Confidence 9999976689999989999999999998887 888899999999999999999 6799999999
Q ss_pred HHHHHHhCCCEEEeCceEEEEEecCC-eEEEEEeeccCCCCceEEEcCEEEEccCCcccCCccCccccCcccCCCCCeee
Q psy14927 954 FQRILGKQGMQFKLGTKVTGASKSGD-NITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPV 1032 (1074)
Q Consensus 954 ~~~~l~~~gV~i~~~~~v~~i~~~~~-~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~V 1032 (1074)
+.+.|.+.|++|.+++++..++.+++ .+.|++.+.. +++..+++||.+++++|++|.+..|++++.|++.|..|+|.|
T Consensus 258 ~qr~L~kQgikF~l~tkv~~a~~~~dg~v~i~ve~ak-~~k~~tle~DvlLVsiGRrP~t~GLgle~iGi~~D~r~rv~v 336 (506)
T KOG1335|consen 258 FQRVLQKQGIKFKLGTKVTSATRNGDGPVEIEVENAK-TGKKETLECDVLLVSIGRRPFTEGLGLEKIGIELDKRGRVIV 336 (506)
T ss_pred HHHHHHhcCceeEeccEEEEeeccCCCceEEEEEecC-CCceeEEEeeEEEEEccCcccccCCChhhcccccccccceec
Confidence 99999999999999999999998877 5888888877 788899999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCEEEecccCCCCCcHHHHHHHHHHHHHHhhCC
Q psy14927 1033 NSRFQTVIPNIFAIGDCIHGPMLAHKAEDEGIVCVEGIAGD 1073 (1074)
Q Consensus 1033 d~~~~ts~~~IyAiGD~~~~~~~~~~A~~~G~~aA~~I~~~ 1073 (1074)
|..++|.+|+||+|||++.+|++++.|..+|-.+...|.+.
T Consensus 337 ~~~f~t~vP~i~~IGDv~~gpMLAhkAeeegI~~VE~i~g~ 377 (506)
T KOG1335|consen 337 NTRFQTKVPHIYAIGDVTLGPMLAHKAEEEGIAAVEGIAGG 377 (506)
T ss_pred cccccccCCceEEecccCCcchhhhhhhhhchhheeeeccc
Confidence 99999999999999999999999999999999999888763
No 6
>KOG3616|consensus
Probab=100.00 E-value=1.2e-34 Score=323.96 Aligned_cols=561 Identities=17% Similarity=0.139 Sum_probs=395.4
Q ss_pred hhcCCHHHHHHHHHHcCcccchhhhHhhhcHHHHHHHhhcCCChHHHHHHHHHHHhccCHHHHHHHHHHhhChhhhhhHh
Q psy14927 7 MKNGDIDRAIRMFEKAETHQQHVPRMLLENTDKLEKYIIQSKDPVLLKWWAQYIESTEDMDLAMKYYEEARDYLSMVRVL 86 (1074)
Q Consensus 7 ~~~g~~~eA~~~Ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~~~~vr~l 86 (1074)
-+++..++|+-||+..+.||..+ . +.+-...+.-.+|.+-|-+|+..+||-+.|.+.-+.-||-.+++.+|
T Consensus 555 leqn~te~aigmy~~lhkwde~i-~--------lae~~~~p~~eklk~sy~q~l~dt~qd~ka~elk~sdgd~laaiqly 625 (1636)
T KOG3616|consen 555 LEQNATEEAIGMYQELHKWDEAI-A--------LAEAKGHPALEKLKRSYLQALMDTGQDEKAAELKESDGDGLAAIQLY 625 (1636)
T ss_pred HhcccHHHHHHHHHHHHhHHHHH-H--------HHHhcCChHHHHHHHHHHHHHHhcCchhhhhhhccccCccHHHHHHH
Confidence 34567888888888888777322 1 12222233336789999999999999999999999999999999999
Q ss_pred hccCCHHHHHHHHHh----cCChHHHHHHH-------------HHHHhcCChHHHHHHHHHhCChHHHHHHHHHhCchHH
Q psy14927 87 CFLQDFSRAAELANA----SGDTAAAYHLA-------------RQYENSGQFDEAIHFYSVAGSCGNAVRLCKEQALDDQ 149 (1074)
Q Consensus 87 ~~~~~~~~a~~i~~~----~~~~~~~~~la-------------~~~~~~g~~~~Ai~~y~~a~~~~~A~~la~~~~~~~~ 149 (1074)
.+.|.|.+|.+.+.. ..+.....+++ ..|++..|++.|+++|.+...|..||+||+-.
T Consensus 626 ika~~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydkagdlfeki~d~dkale~fkkgdaf~kaielarfa----- 700 (1636)
T KOG3616|consen 626 IKAGKPAKAARAALNDEELLADEEILEHIAAALIKGELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFA----- 700 (1636)
T ss_pred HHcCCchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhh-----
Confidence 999999999988863 23333333333 56666667789999999999999999888755
Q ss_pred HHHHhhhcCchhHHHHHHHHcc-CChhHHHHHHHHhCChHHHHHHHHhhccCCcchHHHHHHHHHHhcCCChhhHHHhhh
Q psy14927 150 LWNLALSAGPSEQIEAATYLET-IEPDKAVLLYHKAGALHKALDLAFKLTLSNSGLVFQIKAMKCLLKSGDTNKIIFFAG 228 (1074)
Q Consensus 150 ~~~l~~~~~~~~~~~~A~~~e~-~~~~~A~~ly~kaG~~~kAl~l~~~~~~~~~~~~~~~~a~k~l~~~~~~~~~i~~a~ 228 (1074)
.|.........|+.+++. ++++.|+++|..|+...||++.++. ...|.|+|-+..
T Consensus 701 ----fp~evv~lee~wg~hl~~~~q~daainhfiea~~~~kaieaai~--------------------akew~kai~ild 756 (1636)
T KOG3616|consen 701 ----FPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKAIEAAIG--------------------AKEWKKAISILD 756 (1636)
T ss_pred ----CcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHHHHHHhh--------------------hhhhhhhHhHHH
Confidence 233333444579999999 8899999999999999999999987 334444444443
Q ss_pred hcchHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHH--HhHHHHhhcCHHHHHHHHHHHHHHHHhc
Q psy14927 229 VSRMKEIYVMAANYLQSSDWKSQPELLKSIISFYSKGKAPHLLANFYVSC--AQVEIDEFGNYEKGLGALNEAKRCLLKH 306 (1074)
Q Consensus 229 ~~r~~~l~~~aa~yl~~~~~~~~~~~~~~i~~~Y~k~~~~~~aa~~~~~~--a~~ei~e~~~y~~a~~~l~~a~~~l~~~ 306 (1074)
...+ .....+.+-.|..+|.-.+.|+.|...|... -...|++||.-.+|.++.+-+-++....
T Consensus 757 niqd---------------qk~~s~yy~~iadhyan~~dfe~ae~lf~e~~~~~dai~my~k~~kw~da~kla~e~~~~e 821 (1636)
T KOG3616|consen 757 NIQD---------------QKTASGYYGEIADHYANKGDFEIAEELFTEADLFKDAIDMYGKAGKWEDAFKLAEECHGPE 821 (1636)
T ss_pred Hhhh---------------hccccccchHHHHHhccchhHHHHHHHHHhcchhHHHHHHHhccccHHHHHHHHHHhcCch
Confidence 3222 2223344444555555555555555555444 3446899999999999988877766543
Q ss_pred CC-----CchHHHHHHHHHHH-HHHHHhhcCChHHHhhHHHHHHHHHhhccCcchhHHHHHHHHHHHHHhhhhhcccccc
Q psy14927 307 ND-----SMYETLKSSVVEKL-AEVEIDEFGNYEKGLGALNEAKRCLLKHNDSMYETLKSSVVEKIAEVDKYLEMKRNQS 380 (1074)
Q Consensus 307 ~~-----~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 380 (1074)
.. ...++|........ +.+||. +|++++||.||.++... +.|+|++..+..+++
T Consensus 822 ~t~~~yiakaedldehgkf~eaeqlyit-i~~p~~aiqmydk~~~~-----ddmirlv~k~h~d~l-------------- 881 (1636)
T KOG3616|consen 822 ATISLYIAKAEDLDEHGKFAEAEQLYIT-IGEPDKAIQMYDKHGLD-----DDMIRLVEKHHGDHL-------------- 881 (1636)
T ss_pred hHHHHHHHhHHhHHhhcchhhhhheeEE-ccCchHHHHHHHhhCcc-----hHHHHHHHHhChhhh--------------
Confidence 22 55667777777765 899999 79999999999999999 999999999888888
Q ss_pred ccccCCceEEeccchhhccHHHHhccccccccccccccccccccccCCcceEEEEeccCCCcccccccccCCCcEEE---
Q psy14927 381 FRSSNTDIILPVEKWTLLSLARVLEGIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPGIEYKV--- 457 (1074)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~v--- 457 (1074)
.+||+.+|.++.+.| +...
T Consensus 882 ---------------------------------------------------------~dt~~~f~~e~e~~g-~lkaae~ 903 (1636)
T KOG3616|consen 882 ---------------------------------------------------------HDTHKHFAKELEAEG-DLKAAEE 903 (1636)
T ss_pred ---------------------------------------------------------hHHHHHHHHHHHhcc-ChhHHHH
Confidence 556666777777777 2222
Q ss_pred EeeccCccchhhhcCCCcceEEEEEECCCCcEEEEEEeCCChhHHHHHHHHHHHcCCCHHHHhhhcccCCcccccccccc
Q psy14927 458 GKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAMEYGASCEDVARTCHAHPTVCVEKNDTL 537 (1074)
Q Consensus 458 ~~~~~~~~~ra~~~~~~~G~~Kli~~~~~~~ilG~~iiG~~a~eli~~~a~a~~~~~~~~~l~~~~~~hPt~s~e~~~~~ 537 (1074)
+......+..++.|....++| -..+..| .+-
T Consensus 904 ~flea~d~kaavnmyk~s~lw------------------------~dayria-------------------------kte 934 (1636)
T KOG3616|consen 904 HFLEAGDFKAAVNMYKASELW------------------------EDAYRIA-------------------------KTE 934 (1636)
T ss_pred HHHhhhhHHHHHHHhhhhhhH------------------------HHHHHHH-------------------------hcc
Confidence 222233444444444322222 0011111 111
Q ss_pred CCcccccCCCchHHHhhcchhhHHhccCccccCCeeccCcccCHHHHHHHHHHHHHHHHHH--HHHHhhhCccchhhHHH
Q psy14927 538 GGTCLNVGCIPSKALLNNSHYYHMAHSGDMKARGIEVEGVKLNLETMMGTKSAAVKALTGG--IAHLFKSNKALKIITKQ 615 (1074)
Q Consensus 538 ggtc~n~GCvpkk~l~~aa~~~~~~~~~~a~~~G~~~~~~~~~w~~~~~~~~~~i~~l~~~--~~~~l~~~~i~~~~~~~ 615 (1074)
|| +.+..+.. +-|++-.. .+.-|+.||+. +....+-.-=.-+|.-|
T Consensus 935 gg----------------~n~~k~v~---------------flwaksig-gdaavkllnk~gll~~~id~a~d~~afd~a 982 (1636)
T KOG3616|consen 935 GG----------------ANAEKHVA---------------FLWAKSIG-GDAAVKLLNKHGLLEAAIDFAADNCAFDFA 982 (1636)
T ss_pred cc----------------ccHHHHHH---------------HHHHHhhC-cHHHHHHHHhhhhHHHHhhhhhcccchhhH
Confidence 11 11111111 23332111 14555566532 11111111111237778
Q ss_pred HHHHhhh----hHHHHHHHHHHHHhhhcHHHHHHHHHHh-------------------------h-CHHHHHHHHHHcCC
Q psy14927 616 IILILII----YRVLLKWWAQYIESTEDMDLAMKYYEEA-------------------------R-DYLSMVRVLCFLQD 665 (1074)
Q Consensus 616 ~~~~~~~----~~~l~~~~a~~~e~~~~~~~A~~~y~~a-------------------------g-~~~~ai~~~~~~~~ 665 (1074)
|+|+|+. -|+++..+|.|++++|+|++|-+||.+| | +|+.||+|++|.+|
T Consensus 983 fdlari~~k~k~~~vhlk~a~~ledegk~edaskhyveaiklntynitwcqavpsrfd~e~ir~gnkpe~av~mfi~dnd 1062 (1636)
T KOG3616|consen 983 FDLARIAAKDKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLNTYNITWCQAVPSRFDAEFIRAGNKPEEAVEMFIHDND 1062 (1636)
T ss_pred HHHHHHhhhccCccchhHHhhhhhhccchhhhhHhhHHHhhcccccchhhhcccchhhHHHHHcCCChHHHHHHhhhccc
Confidence 8888877 4589999999999999999997777654 5 99999999999999
Q ss_pred HHHHHHHHHhcCCcHHHHHH---HHHHHhcCCHHHHHHHHHHcCCHHHHHHH---hccHHHHHHHHHHhCCcccHHHHHH
Q psy14927 666 FSRAAELANASGDTAAAYHL---ARQYENSGQFDEAIHFYSVAGSCGNAVRL---CGQLDAVESIASELNVQSDQDLILK 739 (1074)
Q Consensus 666 ~~~a~~v~~~~~~~~~~~~~---A~~~~~~g~~~~A~~~~~kag~~~~Av~m---a~~w~~a~~~A~~~~~~~~~~~~~~ 739 (1074)
|..|.+|++.|.+...+..+ |+--...|+|..|+-++++|++|.-+++. ++.|.+|.|+|+.++|.....+.-.
T Consensus 1063 wa~aervae~h~~~~l~dv~tgqar~aiee~d~~kae~fllrankp~i~l~yf~e~~lw~dalri~kdylp~q~a~iqee 1142 (1636)
T KOG3616|consen 1063 WAAAERVAEAHCEDLLADVLTGQARGAIEEGDFLKAEGFLLRANKPDIALNYFIEAELWPDALRIAKDYLPHQAAAIQEE 1142 (1636)
T ss_pred HHHHHHHHHhhChhhhHHHHhhhhhccccccchhhhhhheeecCCCchHHHHHHHhccChHHHHHHHhhChhHHHHHHHH
Confidence 99999999999988877744 88888899999999999999999999998 8999999999999999877666555
Q ss_pred HHHHHHHcCC-----HHHHHHHHHHhCCHHHHHHHHHHcCCCCch
Q psy14927 740 CASYFARREH-----HDRAVQMYAIARRYDQALSLIQTKHVPLSE 779 (1074)
Q Consensus 740 ~a~~~~~~~~-----~~~Ai~~y~~ag~~~~Ai~~~~~~~~~~~~ 779 (1074)
+-+.-++.|- +..-.+-|+.+|+|..|+..+++...+.+.
T Consensus 1143 yek~~~k~gargvd~fvaqak~weq~gd~rkav~~~lkinrdst~ 1187 (1636)
T KOG3616|consen 1143 YEKEALKKGARGVDGFVAQAKEWEQAGDWRKAVDALLKINRDSTD 1187 (1636)
T ss_pred HHHHHHhccccccHHHHHHHHHHHhcccHHHHHHHHhhhccCCCC
Confidence 6555554443 234457788889999999888888776543
No 7
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=1.1e-32 Score=327.99 Aligned_cols=275 Identities=39% Similarity=0.528 Sum_probs=226.4
Q ss_pred hhhhhhccccchHHHHHHHhh-----hhhhhcccccccc------------------------------------chhhh
Q psy14927 795 QVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKL------------------------------------NLETM 833 (1074)
Q Consensus 795 ~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~------------------------------------~~~~~ 833 (1074)
.+|+||||||+|+.||..+++ +++|+.+..||.. +|..+
T Consensus 5 ~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c~n~gciP~K~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~ 84 (471)
T PRK06467 5 TQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCLNVGCIPSKALLHVAKVIEEAKALAEHGIVFGEPKIDIDKM 84 (471)
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCcccccccCCCcccHHHHHHHHHHHHHHhhhhhcCcccCCCCcCHHHH
Confidence 459999999999999999999 7888765555521 11222
Q ss_pred hhhhhHHHhhhhhhHHHHhhhCCeEEEeeeEEEecCCeEEEEeCCCCeeEEEcCeEEEccCCCCCCCCCCCCCCcceech
Q psy14927 834 MGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGIEVDEETIVSS 913 (1074)
Q Consensus 834 ~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~v~~id~~~~~v~~~~G~~~~i~~d~lIIATG~~p~~ipgi~~~~~~v~t~ 913 (1074)
..++....+.+...+...++..||+++.|++++++++.+.|...+|+..++.||+||||||++|..+|++++....++++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~a~~~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~~p~~~~~~~~v~~~ 164 (471)
T PRK06467 85 RARKEKVVKQLTGGLAGMAKGRKVTVVNGLGKFTGGNTLEVTGEDGKTTVIEFDNAIIAAGSRPIQLPFIPHDDPRIWDS 164 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEecCCCceEEEEcCEEEEeCCCCCCCCCCCCCCCCcEECh
Confidence 22222233333344556677889999999999999988888776764467999999999999997667776666678888
Q ss_pred hhHhcchH-----------------hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEe
Q psy14927 914 TGALSLKK-----------------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASK 976 (1074)
Q Consensus 914 ~~~~~~~~-----------------A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~ 976 (1074)
.+.+.+.. |..|.++|.+||++++.++++ +.+++++++.+.+.|++. |++++++.+++++.
T Consensus 165 ~~~~~~~~~~~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il-~~~d~~~~~~~~~~l~~~-v~i~~~~~v~~i~~ 242 (471)
T PRK06467 165 TDALELKEVPKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVI-PAADKDIVKVFTKRIKKQ-FNIMLETKVTAVEA 242 (471)
T ss_pred HHhhccccCCCeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCC-CcCCHHHHHHHHHHHhhc-eEEEcCCEEEEEEE
Confidence 88776654 888899999999999999999 789999999999999988 99999999999987
Q ss_pred cCCeEEEEEeeccCCCCceEEEcCEEEEccCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEEecccCCCCCcH
Q psy14927 977 SGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGPMLA 1056 (1074)
Q Consensus 977 ~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~~~~~~~ 1056 (1074)
.++++.+++.+. +++..++++|.||+++|++||++++.+...|++++++|+|.||++++|++|||||+|||++.|.++
T Consensus 243 ~~~~~~v~~~~~--~~~~~~i~~D~vi~a~G~~pn~~~l~~~~~gl~~~~~G~I~Vd~~~~t~~p~VyAiGDv~~~~~la 320 (471)
T PRK06467 243 KEDGIYVTMEGK--KAPAEPQRYDAVLVAVGRVPNGKLLDAEKAGVEVDERGFIRVDKQCRTNVPHIFAIGDIVGQPMLA 320 (471)
T ss_pred cCCEEEEEEEeC--CCcceEEEeCEEEEeecccccCCccChhhcCceECCCCcEeeCCCcccCCCCEEEehhhcCCcccH
Confidence 666666666541 133467999999999999999998767889999999999999999999999999999999988899
Q ss_pred HHHHHHHHHHHHHhhCC
Q psy14927 1057 HKAEDEGIVCVEGIAGD 1073 (1074)
Q Consensus 1057 ~~A~~~G~~aA~~I~~~ 1073 (1074)
+.|..+|+.+|.+|++.
T Consensus 321 ~~A~~eG~~aa~~i~g~ 337 (471)
T PRK06467 321 HKGVHEGHVAAEVIAGK 337 (471)
T ss_pred HHHHHHHHHHHHHHcCC
Confidence 99999999999999874
No 8
>KOG4716|consensus
Probab=100.00 E-value=1.9e-33 Score=293.64 Aligned_cols=323 Identities=24% Similarity=0.408 Sum_probs=262.8
Q ss_pred EEEEeCCChhHHHHHHHHHHHcCCCHHHHhhhcccCCccccccccccCCcccccCCCchHHHhhcchhhHHhccCccccC
Q psy14927 491 GVHIIGPAAGELINEAVLAMEYGASCEDVARTCHAHPTVCVEKNDTLGGTCLNVGCIPSKALLNNSHYYHMAHSGDMKAR 570 (1074)
Q Consensus 491 G~~iiG~~a~eli~~~a~a~~~~~~~~~l~~~~~~hPt~s~e~~~~~ggtc~n~GCvpkk~l~~aa~~~~~~~~~~a~~~ 570 (1074)
...++|.+++.|. .+..|...|.++.-|..+. ||..-- .|.+||||+|+||||||+|.+|+-+-+..+ |+..|
T Consensus 21 DLIviGgGSgGLa-caKeAa~~G~kV~~lDfV~---PtP~Gt-sWGlGGTCvNVGCIPKKLMHQAallG~al~--da~ky 93 (503)
T KOG4716|consen 21 DLIVIGGGSGGLA-CAKEAADLGAKVACLDFVK---PTPQGT-SWGLGGTCVNVGCIPKKLMHQAALLGEALH--DARKY 93 (503)
T ss_pred cEEEEcCCcchhh-HHHHHHhcCCcEEEEeecc---cCCCCC-ccccCceeeecccccHHHHHHHHHHHHHHH--HHHhh
Confidence 3567899999988 7888889999887665443 222222 489999999999999997777776555544 58999
Q ss_pred CeeccC--cccCHHHHHHHHHHHHHHHHHHHHHHhhhCccchhhHHHHHHHhhhhHHHHHHHHHHHHhhhcHHHHHHHHH
Q psy14927 571 GIEVEG--VKLNLETMMGTKSAAVKALTGGIAHLFKSNKALKIITKQIILILIIYRVLLKWWAQYIESTEDMDLAMKYYE 648 (1074)
Q Consensus 571 G~~~~~--~~~~w~~~~~~~~~~i~~l~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~l~~~~a~~~e~~~~~~~A~~~y~ 648 (1074)
||.+.+ +++||..|.+..+++|..+||+|+-.|+++.|. +++.+|+|.+
T Consensus 94 GW~~~e~~ikhdW~~l~~sVqnhI~s~NW~yRv~LreKkV~----------------Y~NsygeFv~------------- 144 (503)
T KOG4716|consen 94 GWNVDEQKIKHDWNKLVKSVQNHIKSLNWGYRVQLREKKVE----------------YINSYGEFVD------------- 144 (503)
T ss_pred CCCCccccccccHHHHHHHHHHHhhhccceEEEEeccceee----------------eeecceeecc-------------
Confidence 999886 789999999999999999999998777777777 3333333332
Q ss_pred HhhCHHHHHHHHHHcCCHHHHHHHHHhcCCcHHHHHHHHHHHhcCCHHHHHHHHHHcCCHHHHHHHhccHHHHHHHHHHh
Q psy14927 649 EARDYLSMVRVLCFLQDFSRAAELANASGDTAAAYHLARQYENSGQFDEAIHFYSVAGSCGNAVRLCGQLDAVESIASEL 728 (1074)
Q Consensus 649 ~ag~~~~ai~~~~~~~~~~~a~~v~~~~~~~~~~~~~A~~~~~~g~~~~A~~~~~kag~~~~Av~ma~~w~~a~~~A~~~ 728 (1074)
T Consensus 145 -------------------------------------------------------------------------------- 144 (503)
T KOG4716|consen 145 -------------------------------------------------------------------------------- 144 (503)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcccHHHHHHHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHcCCCCchhhhhcCCCCCCCccchhhhhhccccchHH
Q psy14927 729 NVQSDQDLILKCASYFARREHHDRAVQMYAIARRYDQALSLIQTKHVPLSEELADLLVPPESDDQRQVVLNTLGNCAAVQ 808 (1074)
Q Consensus 729 ~~~~~~~~~~~~a~~~~~~~~~~~Ai~~y~~ag~~~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~k~~VviiGgG~AGl~ 808 (1074)
T Consensus 145 -------------------------------------------------------------------------------- 144 (503)
T KOG4716|consen 145 -------------------------------------------------------------------------------- 144 (503)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhhhhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEeeeEEEecCCeEEEEeCCCCeeEEEcCe
Q psy14927 809 ANYHLATKLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEVKTKN 888 (1074)
Q Consensus 809 aA~~la~~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~v~~id~~~~~v~~~~G~~~~i~~d~ 888 (1074)
++.+..+..+|.++.++++.
T Consensus 145 ------------------------------------------------------------~h~I~at~~~gk~~~~ta~~ 164 (503)
T KOG4716|consen 145 ------------------------------------------------------------PHKIKATNKKGKERFLTAEN 164 (503)
T ss_pred ------------------------------------------------------------cceEEEecCCCceEEeecce
Confidence 22333333333335688999
Q ss_pred EEEccCCCCCCCCCCCCCCcceechhhHhcchH-----------------hhHHhhcCCcEEEEecCCccCCCCCCHHHH
Q psy14927 889 ILIATGSEVTPFPGIEVDEETIVSSTGALSLKK-----------------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVA 951 (1074)
Q Consensus 889 lIIATG~~p~~ipgi~~~~~~v~t~~~~~~~~~-----------------A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~ 951 (1074)
+|||||.+| ..|++|+..+..+|++|++.+.. |.+|.-+|.+||+..|+-.+ ++||.++.
T Consensus 165 fvIatG~RP-rYp~IpG~~Ey~ITSDDlFsl~~~PGkTLvVGa~YVaLECAgFL~gfg~~vtVmVRSI~L--rGFDqdma 241 (503)
T KOG4716|consen 165 FVIATGLRP-RYPDIPGAKEYGITSDDLFSLPYEPGKTLVVGAGYVALECAGFLKGFGYDVTVMVRSILL--RGFDQDMA 241 (503)
T ss_pred EEEEecCCC-CCCCCCCceeeeecccccccccCCCCceEEEccceeeeehhhhHhhcCCCcEEEEEEeec--ccccHHHH
Confidence 999999998 47788888999999999998776 89999999999999887544 68999999
Q ss_pred HHHHHHHHhCCCEEEeCceEEEEEecCCe-EEEEEeeccCCCCceEEEcCEEEEccCCcccCCccCccccCcccCC-CCC
Q psy14927 952 KQFQRILGKQGMQFKLGTKVTGASKSGDN-ITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDE-KGR 1029 (1074)
Q Consensus 952 ~~~~~~l~~~gV~i~~~~~v~~i~~~~~~-~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~-~G~ 1029 (1074)
+.+.+.|++.||+|...+.+..|+.-+++ ..|...++. ++++-+-++|+|+||+|+.+.++-++++..|++.|+ .|.
T Consensus 242 e~v~~~m~~~Gikf~~~~vp~~Veq~~~g~l~v~~k~t~-t~~~~~~~ydTVl~AiGR~~~~~~l~L~~~GVk~n~ks~K 320 (503)
T KOG4716|consen 242 ELVAEHMEERGIKFLRKTVPERVEQIDDGKLRVFYKNTN-TGEEGEEEYDTVLWAIGRKALTDDLNLDNAGVKTNEKSGK 320 (503)
T ss_pred HHHHHHHHHhCCceeecccceeeeeccCCcEEEEeeccc-ccccccchhhhhhhhhccccchhhcCCCccceeecccCCc
Confidence 99999999999999999888888865544 566666644 555667789999999999999999999999999965 689
Q ss_pred eeeCCCCCCCCCCEEEecccCC-CCCcHHHHHHHHHHHHHHhhCC
Q psy14927 1030 VPVNSRFQTVIPNIFAIGDCIH-GPMLAHKAEDEGIVCVEGIAGD 1073 (1074)
Q Consensus 1030 I~Vd~~~~ts~~~IyAiGD~~~-~~~~~~~A~~~G~~aA~~I~~~ 1073 (1074)
|.||+.-+|++|+|||+||+.. .|.+...|++.|+..|+.+++.
T Consensus 321 I~v~~~e~t~vp~vyAvGDIl~~kpELTPvAIqsGrlLa~Rlf~g 365 (503)
T KOG4716|consen 321 IPVDDEEATNVPYVYAVGDILEDKPELTPVAIQSGRLLARRLFAG 365 (503)
T ss_pred cccChHHhcCCCceEEecceecCCcccchhhhhhchHHHHHHhcC
Confidence 9999999999999999999986 5789999999999999999863
No 9
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=5.1e-32 Score=322.18 Aligned_cols=276 Identities=45% Similarity=0.737 Sum_probs=221.9
Q ss_pred hhhhhhccccchHHHHHHHhh-----hhhhhcccccccc-chhh------------------------------------
Q psy14927 795 QVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKL-NLET------------------------------------ 832 (1074)
Q Consensus 795 ~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~-~~~~------------------------------------ 832 (1074)
.+|+||||||||+.||+.+++ +++|+.+..||.. +..-
T Consensus 4 ~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c~~~gciPsK~l~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~ 83 (466)
T PRK06115 4 YDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTCLNVGCMPSKALLHASELYEAASGGEFAHLGIEVKPTLNLAQ 83 (466)
T ss_pred ccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeeeeccCcccccHHHHHHhHHHHHHhhhhhhhcCccccCccCHHH
Confidence 359999999999999999998 7888755666642 1110
Q ss_pred hhhhhhHHHhhhhhhHHHHhhhCCeEEEeeeEEEecCCeEEEEeCCCCeeEEEcCeEEEccCCCCCCCCCCCCCCcceec
Q psy14927 833 MMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGIEVDEETIVS 912 (1074)
Q Consensus 833 ~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~v~~id~~~~~v~~~~G~~~~i~~d~lIIATG~~p~~ipgi~~~~~~v~t 912 (1074)
+..+.......+...+...++..||+++.|++.+.+++.+.|.+.+|+..+++||+||||||++|+++||++.++..+++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~v~v~~~~g~~~~~~~d~lVIATGs~p~~ipg~~~~~~~~~~ 163 (466)
T PRK06115 84 MMKQKDESVEALTKGVEFLFRKNKVDWIKGWGRLDGVGKVVVKAEDGSETQLEAKDIVIATGSEPTPLPGVTIDNQRIID 163 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEEcCCCceEEEEeCEEEEeCCCCCCCCCCCCCCCCeEEC
Confidence 01111111222223345566677999999998888888888877777545799999999999999878887655667788
Q ss_pred hhhHhcchH-----------------hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEE
Q psy14927 913 STGALSLKK-----------------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGAS 975 (1074)
Q Consensus 913 ~~~~~~~~~-----------------A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~ 975 (1074)
+++++.+.. |..+.++|.+||++++.++++ +.+++++...+.+.|++.||++++++.+.+++
T Consensus 164 ~~~~~~~~~~~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il-~~~d~~~~~~l~~~l~~~gV~i~~~~~V~~i~ 242 (466)
T PRK06115 164 STGALSLPEVPKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRIC-PGTDTETAKTLQKALTKQGMKFKLGSKVTGAT 242 (466)
T ss_pred HHHHhCCccCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCC-CCCCHHHHHHHHHHHHhcCCEEEECcEEEEEE
Confidence 888776432 788899999999999999998 78999999999999999999999999999998
Q ss_pred ecCCeEEEEEeeccCCCCceEEEcCEEEEccCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEEecccCCCCCc
Q psy14927 976 KSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGPML 1055 (1074)
Q Consensus 976 ~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~~~~~~ 1055 (1074)
++++++.+++.+.. +|+++++++|.||+++|++||++.++++..|++++++| +.||++++|++|||||+|||++.|++
T Consensus 243 ~~~~~v~v~~~~~~-~g~~~~i~~D~vi~a~G~~pn~~~l~~~~~g~~~~~~G-~~vd~~~~Ts~~~IyA~GD~~~~~~l 320 (466)
T PRK06115 243 AGADGVSLTLEPAA-GGAAETLQADYVLVAIGRRPYTQGLGLETVGLETDKRG-MLANDHHRTSVPGVWVIGDVTSGPML 320 (466)
T ss_pred EcCCeEEEEEEEcC-CCceeEEEeCEEEEccCCccccccCCcccccceeCCCC-EEECCCeecCCCCEEEeeecCCCccc
Confidence 76566666655322 24467899999999999999999877778889888877 67899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhCC
Q psy14927 1056 AHKAEDEGIVCVEGIAGD 1073 (1074)
Q Consensus 1056 ~~~A~~~G~~aA~~I~~~ 1073 (1074)
++.|..+|+.+|+||++.
T Consensus 321 a~~A~~~g~~aa~~i~~~ 338 (466)
T PRK06115 321 AHKAEDEAVACIERIAGK 338 (466)
T ss_pred HHHHHHHHHHHHHHHcCC
Confidence 999999999999999874
No 10
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=1.3e-31 Score=319.70 Aligned_cols=272 Identities=41% Similarity=0.635 Sum_probs=222.2
Q ss_pred hhhhhhccccchHHHHHHHhh-----hhhhhcccccccc-c-----------------------------------hhhh
Q psy14927 795 QVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKL-N-----------------------------------LETM 833 (1074)
Q Consensus 795 ~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~-~-----------------------------------~~~~ 833 (1074)
.+|+||||||||++||..+++ .++|+.. .||.. + |..+
T Consensus 5 yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~~~gciP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 83 (462)
T PRK06416 5 YDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK-LGGTCLNRGCIPSKALLHAAERADEARHSEDFGIKAENVGIDFKKV 83 (462)
T ss_pred ccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc-cccceeecccCCcHHHHHhhhHHHHHHHHHhcCcccCCCccCHHHH
Confidence 459999999999999999998 6788765 55422 1 1122
Q ss_pred hhhhhHHHhhhhhhHHHHhhhCCeEEEeeeEEEecCCeEEEEeCCCCeeEEEcCeEEEccCCCCCCCCCCCCCCcceech
Q psy14927 834 MGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGIEVDEETIVSS 913 (1074)
Q Consensus 834 ~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~v~~id~~~~~v~~~~G~~~~i~~d~lIIATG~~p~~ipgi~~~~~~v~t~ 913 (1074)
..+.+...+.+...+...+++.||+++.|++++++++.+.|...+|. .++.||+||||||++|..+||++..+..++++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~~~v~~~~~~-~~~~~d~lViAtGs~p~~~pg~~~~~~~v~~~ 162 (462)
T PRK06416 84 QEWKNGVVNRLTGGVEGLLKKNKVDIIRGEAKLVDPNTVRVMTEDGE-QTYTAKNIILATGSRPRELPGIEIDGRVIWTS 162 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEecCCCc-EEEEeCEEEEeCCCCCCCCCCCCCCCCeEEcc
Confidence 22222222333334566777889999999999999988888754432 57999999999999997778876555567788
Q ss_pred hhHhcchH-----------------hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEe
Q psy14927 914 TGALSLKK-----------------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASK 976 (1074)
Q Consensus 914 ~~~~~~~~-----------------A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~ 976 (1074)
++.+.+.. |..|++.|.+||++++.++++ +.+++++...+.+.|++.||++++++.|.++++
T Consensus 163 ~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l-~~~~~~~~~~l~~~l~~~gV~i~~~~~V~~i~~ 241 (462)
T PRK06416 163 DEALNLDEVPKSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRIL-PGEDKEISKLAERALKKRGIKIKTGAKAKKVEQ 241 (462)
T ss_pred hHhhCccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcC-CcCCHHHHHHHHHHHHHcCCEEEeCCEEEEEEE
Confidence 87765443 788889999999999999998 789999999999999999999999999999998
Q ss_pred cCCeEEEEEeeccCCCCceEEEcCEEEEccCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEEecccCCCCCcH
Q psy14927 977 SGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGPMLA 1056 (1074)
Q Consensus 977 ~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~~~~~~~ 1056 (1074)
+++++.+.+.+ +++.+++++|.||+++|++|++.+++++..|++++ +|+|.||++++|+.|+|||+|||+..++++
T Consensus 242 ~~~~v~v~~~~---gg~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~~~-~g~i~vd~~~~t~~~~VyAiGD~~~~~~~~ 317 (462)
T PRK06416 242 TDDGVTVTLED---GGKEETLEADYVLVAVGRRPNTENLGLEELGVKTD-RGFIEVDEQLRTNVPNIYAIGDIVGGPMLA 317 (462)
T ss_pred eCCEEEEEEEe---CCeeEEEEeCEEEEeeCCccCCCCCCchhcCCeec-CCEEeECCCCccCCCCEEEeeecCCCcchH
Confidence 76666666554 23346799999999999999999877788899998 899999999999999999999999888899
Q ss_pred HHHHHHHHHHHHHhhCC
Q psy14927 1057 HKAEDEGIVCVEGIAGD 1073 (1074)
Q Consensus 1057 ~~A~~~G~~aA~~I~~~ 1073 (1074)
..|..||+.+|.||++.
T Consensus 318 ~~A~~~g~~aa~ni~~~ 334 (462)
T PRK06416 318 HKASAEGIIAAEAIAGN 334 (462)
T ss_pred HHHHHHHHHHHHHHcCC
Confidence 99999999999999874
No 11
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=100.00 E-value=5.2e-31 Score=312.05 Aligned_cols=207 Identities=29% Similarity=0.466 Sum_probs=173.6
Q ss_pred CCeEEEeeeEEEecCCeEEEEeCCCCeeEEEcCeEEEccCCCCCCCCCCCCCCcceechhhHhcchH-------------
Q psy14927 855 NKVTQLNGHGKITGPNTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGIEVDEETIVSSTGALSLKK------------- 921 (1074)
Q Consensus 855 ~gV~~~~g~v~~id~~~~~v~~~~G~~~~i~~d~lIIATG~~p~~ipgi~~~~~~v~t~~~~~~~~~------------- 921 (1074)
.||+++.|+++++++..+. +.+| .+++||+||||||++|..+|+++.....++++++++.+..
T Consensus 105 ~gv~~~~g~~~~~~~~~V~--~~~g--~~~~~d~lIiATGs~p~~p~~~~~~~~~~~~~~~~~~l~~~~k~vvVIGgG~i 180 (452)
T TIGR03452 105 PNIDVYDGHARFVGPRTLR--TGDG--EEITGDQIVIAAGSRPYIPPAIADSGVRYHTNEDIMRLPELPESLVIVGGGYI 180 (452)
T ss_pred CCeEEEEEEEEEecCCEEE--ECCC--cEEEeCEEEEEECCCCCCCCCCCCCCCEEEcHHHHHhhhhcCCcEEEECCCHH
Confidence 4888999988877765544 4566 5799999999999998644544444445778888876653
Q ss_pred ----hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEEeeccCCCCceEE
Q psy14927 922 ----GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEEL 997 (1074)
Q Consensus 922 ----A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i 997 (1074)
|..|.++|.+||++++.+.++ +.+++++...+.+.+ +.||++++++.|.+++.+++++.+++.+ ++++
T Consensus 181 g~E~A~~l~~~G~~Vtli~~~~~ll-~~~d~~~~~~l~~~~-~~gI~i~~~~~V~~i~~~~~~v~v~~~~------g~~i 252 (452)
T TIGR03452 181 AAEFAHVFSALGTRVTIVNRSTKLL-RHLDEDISDRFTEIA-KKKWDIRLGRNVTAVEQDGDGVTLTLDD------GSTV 252 (452)
T ss_pred HHHHHHHHHhCCCcEEEEEccCccc-cccCHHHHHHHHHHH-hcCCEEEeCCEEEEEEEcCCeEEEEEcC------CCEE
Confidence 888899999999999999988 778999988887655 4689999999999998766665565533 3479
Q ss_pred EcCEEEEccCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEEecccCCCCCcHHHHHHHHHHHHHHhhCC
Q psy14927 998 SCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGPMLAHKAEDEGIVCVEGIAGD 1073 (1074)
Q Consensus 998 ~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~~~~~~~~~A~~~G~~aA~~I~~~ 1073 (1074)
++|.|++++|++|++++++++..|++++++|+|.||++++|++|||||+|||++.+++++.|..||+++|+||++.
T Consensus 253 ~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd~~~~Ts~~~IyA~GD~~~~~~l~~~A~~~g~~~a~ni~~~ 328 (452)
T TIGR03452 253 TADVLLVATGRVPNGDLLDAEAAGVEVDEDGRIKVDEYGRTSARGVWALGDVSSPYQLKHVANAEARVVKHNLLHP 328 (452)
T ss_pred EcCEEEEeeccCcCCCCcCchhcCeeECCCCcEeeCCCcccCCCCEEEeecccCcccChhHHHHHHHHHHHHhcCC
Confidence 9999999999999999877788899999999999999999999999999999998889999999999999999874
No 12
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=100.00 E-value=2.4e-31 Score=317.44 Aligned_cols=272 Identities=25% Similarity=0.391 Sum_probs=221.6
Q ss_pred hhhhhhccccchHHHHHHHhh-----hhhhhccccccccchhh-hh----------------------------------
Q psy14927 795 QVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLET-MM---------------------------------- 834 (1074)
Q Consensus 795 ~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~~-~~---------------------------------- 834 (1074)
.+|+||||||+|+.||+.+++ +++|+.+..||...... +|
T Consensus 6 yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG~~~~~gcipsk~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (461)
T PRK05249 6 YDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGCTHTGTIPSKALREAVLRLIGFNQNPLYSSYRVKLRITFADL 85 (461)
T ss_pred ccEEEECCCHHHHHHHHHHHhCCCEEEEEeccccccccccccCCCCHHHHHHHHHHHHHHhhhhhhcccCCcCccCHHHH
Confidence 459999999999999999998 78888766666431111 11
Q ss_pred -hhhhHHHhhhhhhHHHHhhhCCeEEEeeeEEEecCCeEEEEeCCCCeeEEEcCeEEEccCCCCCCCCCCCCCCcceech
Q psy14927 835 -GTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGIEVDEETIVSS 913 (1074)
Q Consensus 835 -~~~~~~~~~l~~~~~~~l~~~gV~~~~g~v~~id~~~~~v~~~~G~~~~i~~d~lIIATG~~p~~ipgi~~~~~~v~t~ 913 (1074)
.+.....+.+...+..++.+.||+++.|++.+++++.++|...+|...++.||+||||||++|..+|..+.....++++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lviATGs~p~~p~~~~~~~~~v~~~ 165 (461)
T PRK05249 86 LARADHVINKQVEVRRGQYERNRVDLIQGRARFVDPHTVEVECPDGEVETLTADKIVIATGSRPYRPPDVDFDHPRIYDS 165 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEecCCEEEEEeCCCceEEEEcCEEEEcCCCCCCCCCCCCCCCCeEEcH
Confidence 0111111122233556677889999999999999999888887775457999999999999985444444445667888
Q ss_pred hhHhcchH-----------------hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEe
Q psy14927 914 TGALSLKK-----------------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASK 976 (1074)
Q Consensus 914 ~~~~~~~~-----------------A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~ 976 (1074)
++++.... |..|++.|.+||++++.++++ +.+++++...+.+.|++.||++++++.++++..
T Consensus 166 ~~~~~~~~~~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l-~~~d~~~~~~l~~~l~~~gI~v~~~~~v~~i~~ 244 (461)
T PRK05249 166 DSILSLDHLPRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLL-SFLDDEISDALSYHLRDSGVTIRHNEEVEKVEG 244 (461)
T ss_pred HHhhchhhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcC-CcCCHHHHHHHHHHHHHcCCEEEECCEEEEEEE
Confidence 77766543 888899999999999999998 789999999999999999999999999999987
Q ss_pred cCCeEEEEEeeccCCCCceEEEcCEEEEccCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEEecccCCCCCcH
Q psy14927 977 SGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGPMLA 1056 (1074)
Q Consensus 977 ~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~~~~~~~ 1056 (1074)
+++++.+++.+ +.++++|.||+|+|++||++.+.++..|++++++|+|.||++++|+.|||||+|||++.|+++
T Consensus 245 ~~~~~~v~~~~------g~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~~~IyAiGD~~~~~~~~ 318 (461)
T PRK05249 245 GDDGVIVHLKS------GKKIKADCLLYANGRTGNTDGLNLENAGLEADSRGQLKVNENYQTAVPHIYAVGDVIGFPSLA 318 (461)
T ss_pred eCCeEEEEECC------CCEEEeCEEEEeecCCccccCCCchhhCcEecCCCcEeeCCCcccCCCCEEEeeecCCCcccH
Confidence 66666565443 347999999999999999998767889999999999999999999999999999999988899
Q ss_pred HHHHHHHHHHHHHhhCC
Q psy14927 1057 HKAEDEGIVCVEGIAGD 1073 (1074)
Q Consensus 1057 ~~A~~~G~~aA~~I~~~ 1073 (1074)
+.|..+|+.||.||+|.
T Consensus 319 ~~A~~~g~~aa~~i~g~ 335 (461)
T PRK05249 319 SASMDQGRIAAQHAVGE 335 (461)
T ss_pred hHHHHHHHHHHHHHcCC
Confidence 99999999999999874
No 13
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=100.00 E-value=4e-31 Score=313.30 Aligned_cols=266 Identities=28% Similarity=0.423 Sum_probs=216.6
Q ss_pred hhhhhhccccchHHHHHHHhh-----hhhhhcccccccc------------------------------------chhhh
Q psy14927 795 QVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKL------------------------------------NLETM 833 (1074)
Q Consensus 795 ~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~------------------------------------~~~~~ 833 (1074)
.+|+||||||||++||+.+++ +++|+. ..||.. +|..+
T Consensus 3 yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~ 81 (446)
T TIGR01424 3 YDLFVIGAGSGGVRAARLAANHGAKVAIAEEP-RVGGTCVIRGCVPKKLMVYGSTFGGEFEDAAGYGWTVGKARFDWKKL 81 (446)
T ss_pred ccEEEECCCHHHHHHHHHHHhCCCcEEEEecC-ccCceeecCCcCchHHHHHHHHHHHHHhhhHhcCcCCCCCCcCHHHH
Confidence 359999999999999999999 677763 445432 22333
Q ss_pred hhhhhHHHhhhhhhHHHHhhhCCeEEEeeeEEEecCCeEEEEeCCCCeeEEEcCeEEEccCCCCCCCCCCCCCCcceech
Q psy14927 834 MGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGIEVDEETIVSS 913 (1074)
Q Consensus 834 ~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~v~~id~~~~~v~~~~G~~~~i~~d~lIIATG~~p~~ipgi~~~~~~v~t~ 913 (1074)
..+.......+...+...+.+.||+++.|+++.++++.+.+. .+| .++.||+||||||++|. .|.+++.. ..+++
T Consensus 82 ~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~~~~v~~~~v~v~-~~g--~~~~~d~lIiATGs~p~-~p~i~G~~-~~~~~ 156 (446)
T TIGR01424 82 LQKKDDEIARLSGLYKRLLANAGVELLEGRARLVGPNTVEVL-QDG--TTYTAKKILIAVGGRPQ-KPNLPGHE-LGITS 156 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEecCCEEEEe-cCC--eEEEcCEEEEecCCcCC-CCCCCCcc-ceech
Confidence 333344445566667788888999999999999999877764 345 57999999999999984 23343322 34566
Q ss_pred hhHhcchH-----------------hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEe
Q psy14927 914 TGALSLKK-----------------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASK 976 (1074)
Q Consensus 914 ~~~~~~~~-----------------A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~ 976 (1074)
++.+.+.. |..+.++|.+||++++.+.++ +.+++++...+.+.|++.||++++++.+.++..
T Consensus 157 ~~~~~l~~~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l-~~~d~~~~~~l~~~l~~~gV~i~~~~~v~~i~~ 235 (446)
T TIGR01424 157 NEAFHLPTLPKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELIL-RGFDDDMRALLARNMEGRGIRIHPQTSLTSITK 235 (446)
T ss_pred HHhhcccccCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCC-cccCHHHHHHHHHHHHHCCCEEEeCCEEEEEEE
Confidence 66665332 788889999999999999988 779999999999999999999999999999987
Q ss_pred cCCeEEEEEeeccCCCCceEEEcCEEEEccCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEEecccCCCCCcH
Q psy14927 977 SGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGPMLA 1056 (1074)
Q Consensus 977 ~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~~~~~~~ 1056 (1074)
.++++.+++.+ +.++++|.||+|+|++|+++.++++..|++++++|+|.||+++||++|||||+|||++.++++
T Consensus 236 ~~~~~~v~~~~------g~~i~~D~viva~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~~~Ts~~~IyA~GD~~~~~~l~ 309 (446)
T TIGR01424 236 TDDGLKVTLSH------GEEIVADVVLFATGRSPNTKGLGLEAAGVELNDAGAIAVDEYSRTSIPSIYAVGDVTDRINLT 309 (446)
T ss_pred cCCeEEEEEcC------CcEeecCEEEEeeCCCcCCCcCCccccCeEECCCCcEEeCCCCccCCCCEEEeeccCCCccch
Confidence 65565565543 457999999999999999998777889999999999999999999999999999999988899
Q ss_pred HHHHHHHHHHHHHhhCC
Q psy14927 1057 HKAEDEGIVCVEGIAGD 1073 (1074)
Q Consensus 1057 ~~A~~~G~~aA~~I~~~ 1073 (1074)
+.|..+|+++|.||++.
T Consensus 310 ~~A~~~g~~~a~~i~~~ 326 (446)
T TIGR01424 310 PVAIMEATCFANTEFGN 326 (446)
T ss_pred hHHHHHHHHHHHHHhcC
Confidence 99999999999999973
No 14
>PLN02507 glutathione reductase
Probab=99.98 E-value=5.3e-31 Score=314.65 Aligned_cols=271 Identities=31% Similarity=0.416 Sum_probs=217.1
Q ss_pred chhhhhhccccchHHHHHHHhh-----hhhhh---------cccccccc-c-----------------------------
Q psy14927 794 RQVVLNTLGNCAAVQANYHLAT-----KLFTQ---------AGDKGVKL-N----------------------------- 829 (1074)
Q Consensus 794 k~~VviiGgG~AGl~aA~~la~-----~l~e~---------~~~~g~~~-~----------------------------- 829 (1074)
+.+|+||||||+|+.||..+++ .++|+ .+..||.. +
T Consensus 25 ~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~~~~~~~~~~~~~GGtc~n~GciPsK~l~~~a~~~~~~~~~~~~G~~~ 104 (499)
T PLN02507 25 DFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSESIGGVGGTCVIRGCVPKKILVYGATFGGEFEDAKNYGWEI 104 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcccccccCCCccceeeccCchhHHHHHHHHHHHHHHHHHHhcCccc
Confidence 4569999999999999999998 67884 23344432 1
Q ss_pred -------hhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEeeeEEEecCCeEEEEeCCCCeeEEEcCeEEEccCCCCCCCCC
Q psy14927 830 -------LETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEVKTKNILIATGSEVTPFPG 902 (1074)
Q Consensus 830 -------~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~v~~id~~~~~v~~~~G~~~~i~~d~lIIATG~~p~~ipg 902 (1074)
|..+..........+...+...+...||+++.|+++++|++.+.|++.+|+..++.||+||||||++|.. |.
T Consensus 105 ~~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~i~g~a~~vd~~~v~V~~~~g~~~~~~~d~LIIATGs~p~~-p~ 183 (499)
T PLN02507 105 NEKVDFNWKKLLQKKTDEILRLNGIYKRLLANAGVKLYEGEGKIVGPNEVEVTQLDGTKLRYTAKHILIATGSRAQR-PN 183 (499)
T ss_pred CCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEecCCEEEEEeCCCcEEEEEcCEEEEecCCCCCC-CC
Confidence 1111222222223333445566777899999999999999999999888855579999999999999842 22
Q ss_pred CCCCCcceechhhHhcchH-----------------hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEE
Q psy14927 903 IEVDEETIVSSTGALSLKK-----------------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQF 965 (1074)
Q Consensus 903 i~~~~~~v~t~~~~~~~~~-----------------A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i 965 (1074)
+++. ...+++++++.+.. |..+..+|.+|||+++.++++ +.+++++...+.+.|++.||++
T Consensus 184 ipG~-~~~~~~~~~~~l~~~~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l-~~~d~~~~~~l~~~l~~~GI~i 261 (499)
T PLN02507 184 IPGK-ELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPL-RGFDDEMRAVVARNLEGRGINL 261 (499)
T ss_pred CCCc-cceechHHhhhhhhcCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcC-cccCHHHHHHHHHHHHhCCCEE
Confidence 3332 22456666655433 788889999999999999888 7799999999999999999999
Q ss_pred EeCceEEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEE
Q psy14927 966 KLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFA 1045 (1074)
Q Consensus 966 ~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyA 1045 (1074)
++++.|++++.+++++.+.+.+ +.++++|.||+++|++||+++++++..|++++++|+|.||+++||++|||||
T Consensus 262 ~~~~~V~~i~~~~~~~~v~~~~------g~~i~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~I~Vd~~~~Ts~p~IyA 335 (499)
T PLN02507 262 HPRTNLTQLTKTEGGIKVITDH------GEEFVADVVLFATGRAPNTKRLNLEAVGVELDKAGAVKVDEYSRTNIPSIWA 335 (499)
T ss_pred EeCCEEEEEEEeCCeEEEEECC------CcEEEcCEEEEeecCCCCCCCCCchhhCcEECCCCcEecCCCCcCCCCCEEE
Confidence 9999999998765665555433 4579999999999999999987778899999999999999999999999999
Q ss_pred ecccCCCCCcHHHHHHHHHHHHHHhhCC
Q psy14927 1046 IGDCIHGPMLAHKAEDEGIVCVEGIAGD 1073 (1074)
Q Consensus 1046 iGD~~~~~~~~~~A~~~G~~aA~~I~~~ 1073 (1074)
+|||++.+.+++.|..||+++|+||++.
T Consensus 336 iGDv~~~~~l~~~A~~qg~~aa~ni~g~ 363 (499)
T PLN02507 336 IGDVTNRINLTPVALMEGTCFAKTVFGG 363 (499)
T ss_pred eeEcCCCCccHHHHHHHHHHHHHHHcCC
Confidence 9999998889999999999999999863
No 15
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=99.98 E-value=6.1e-31 Score=311.28 Aligned_cols=265 Identities=26% Similarity=0.339 Sum_probs=214.2
Q ss_pred hhhhhhccccchHHHHHHHhh-----hhhhhccccccc-------------------------------------cchhh
Q psy14927 795 QVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVK-------------------------------------LNLET 832 (1074)
Q Consensus 795 ~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~-------------------------------------~~~~~ 832 (1074)
.+|+||||||+|+.||+.+++ +++|+.. .||. ++|..
T Consensus 3 yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~ 81 (450)
T TIGR01421 3 YDYLVIGGGSGGIASARRAAEHGAKALLVEAKK-LGGTCVNVGCVPKKVMWYASDLAERMHDAADYGFYQNLENTFNWPE 81 (450)
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCcEEEecccc-cccceeccCcCccHHHHHHHHHHHHHhHHhhcCcccCCcCccCHHH
Confidence 459999999999999999998 6778743 4442 22333
Q ss_pred hhhhhhHHHhhhhhhHHHHhhhCCeEEEeeeEEEecCCeEEEEeCCCCeeEEEcCeEEEccCCCCCCCCCCCCCCcceec
Q psy14927 833 MMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGIEVDEETIVS 912 (1074)
Q Consensus 833 ~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~v~~id~~~~~v~~~~G~~~~i~~d~lIIATG~~p~~ipgi~~~~~~v~t 912 (1074)
+..++....+.+...+...+.+.||+++.|++.+.+++.+.+ +| ..+.||+||||||++|..++++++.. ..++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~~~~~~v~v---~~--~~~~~d~vIiAtGs~p~~p~~i~g~~-~~~~ 155 (450)
T TIGR01421 82 LKEKRDAYVDRLNGIYQKNLEKNKVDVIFGHARFTKDGTVEV---NG--RDYTAPHILIATGGKPSFPENIPGAE-LGTD 155 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEE---CC--EEEEeCEEEEecCCCCCCCCCCCCCc-eeEc
Confidence 333344444455555777788889999999888777765544 44 57999999999999984332454432 3456
Q ss_pred hhhHhcchH-----------------hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEE
Q psy14927 913 STGALSLKK-----------------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGAS 975 (1074)
Q Consensus 913 ~~~~~~~~~-----------------A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~ 975 (1074)
+++++.+.. |..|.++|++||++++.++++ +.+++++.+.+.+.|++.||++++++.++++.
T Consensus 156 ~~~~~~~~~~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il-~~~d~~~~~~~~~~l~~~gI~i~~~~~v~~i~ 234 (450)
T TIGR01421 156 SDGFFALEELPKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVL-RSFDSMISETITEEYEKEGINVHKLSKPVKVE 234 (450)
T ss_pred HHHhhCccccCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCC-cccCHHHHHHHHHHHHHcCCEEEcCCEEEEEE
Confidence 777666543 888999999999999999998 78999999999999999999999999999998
Q ss_pred ecCCe-EEEEEeeccCCCCceEEEcCEEEEccCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEEecccCCCCC
Q psy14927 976 KSGDN-ITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGPM 1054 (1074)
Q Consensus 976 ~~~~~-~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~~~~~ 1054 (1074)
+++++ +.+.+.+ | ...+++|.||+++|++||++++.++..|++++++|+|.||++++|++|||||+|||++.+.
T Consensus 235 ~~~~~~~~v~~~~----g-~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~~~T~~p~IyAiGD~~~~~~ 309 (450)
T TIGR01421 235 KTVEGKLVIHFED----G-KSIDDVDELIWAIGRKPNTKGLGLENVGIKLNEKGQIIVDEYQNTNVPGIYALGDVVGKVE 309 (450)
T ss_pred EeCCceEEEEECC----C-cEEEEcCEEEEeeCCCcCcccCCccccCcEECCCCcEEeCCCCcCCCCCEEEEEecCCCcc
Confidence 75443 4555543 3 2579999999999999999987778899999999999999999999999999999999888
Q ss_pred cHHHHHHHHHHHHHHhhC
Q psy14927 1055 LAHKAEDEGIVCVEGIAG 1072 (1074)
Q Consensus 1055 ~~~~A~~~G~~aA~~I~~ 1072 (1074)
+++.|..+|+.+|.||++
T Consensus 310 ~~~~A~~~g~~aa~~i~~ 327 (450)
T TIGR01421 310 LTPVAIAAGRKLSERLFN 327 (450)
T ss_pred cHHHHHHHHHHHHHHHhc
Confidence 999999999999999986
No 16
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=99.98 E-value=6.1e-31 Score=312.94 Aligned_cols=270 Identities=26% Similarity=0.415 Sum_probs=219.5
Q ss_pred hhhhhccccchHHHHHHHhh-----hhhhhcccccccc---------------------------------------chh
Q psy14927 796 VVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKL---------------------------------------NLE 831 (1074)
Q Consensus 796 ~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~---------------------------------------~~~ 831 (1074)
+|+||||||+|+.+|..+++ +++++.. .||.. +|.
T Consensus 3 ~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~-~gG~c~~~gciPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~ 81 (466)
T PRK07845 3 RIVIIGGGPGGYEAALVAAQLGADVTVIERDG-LGGAAVLTDCVPSKTLIATAEVRTELRRAAELGIRFIDDGEARVDLP 81 (466)
T ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEEccC-CCCcccccCCcchHHHHHHHHHHHHHHHHHhCCcccccCcccccCHH
Confidence 49999999999999999998 6777654 33311 122
Q ss_pred hhhhhhhHHHhhhhhhHHHHhhhCCeEEEeeeEEE----ecCCeEEEEeCCCCeeEEEcCeEEEccCCCCCCCCCCCCCC
Q psy14927 832 TMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKI----TGPNTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGIEVDE 907 (1074)
Q Consensus 832 ~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~v~~----id~~~~~v~~~~G~~~~i~~d~lIIATG~~p~~ipgi~~~~ 907 (1074)
.+..+.....+.+...+.+.+.+.||+++.|++++ ++++.+.|.+.+|+..++.||+||||||++|..+|+.....
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~~~~~~~~~~~~~v~V~~~~g~~~~~~~d~lViATGs~p~~~p~~~~~~ 161 (466)
T PRK07845 82 AVNARVKALAAAQSADIRARLEREGVRVIAGRGRLIDPGLGPHRVKVTTADGGEETLDADVVLIATGASPRILPTAEPDG 161 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEeecccCCCEEEEEeCCCceEEEecCEEEEcCCCCCCCCCCCCCCC
Confidence 22223333333334456677888999999999988 67788888777774447999999999999986566533334
Q ss_pred cceechhhHhcchH-----------------hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCce
Q psy14927 908 ETIVSSTGALSLKK-----------------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTK 970 (1074)
Q Consensus 908 ~~v~t~~~~~~~~~-----------------A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~ 970 (1074)
..++++.++..... |..|+++|++||++++.++++ +.+++++...+.+.|++.||++++++.
T Consensus 162 ~~v~~~~~~~~~~~~~~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l-~~~d~~~~~~l~~~L~~~gV~i~~~~~ 240 (466)
T PRK07845 162 ERILTWRQLYDLDELPEHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVL-PGEDADAAEVLEEVFARRGMTVLKRSR 240 (466)
T ss_pred ceEEeehhhhcccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCC-CCCCHHHHHHHHHHHHHCCcEEEcCCE
Confidence 56777777765432 888899999999999999998 788999999999999999999999999
Q ss_pred EEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEEecccC
Q psy14927 971 VTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCI 1050 (1074)
Q Consensus 971 v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~ 1050 (1074)
+.+++.+++++.+.+.+ ++++++|.||+++|++||++.+.++.+|++++++|+|.||++++|++|||||+|||+
T Consensus 241 v~~v~~~~~~~~v~~~~------g~~l~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~i~Vd~~~~Ts~~~IyA~GD~~ 314 (466)
T PRK07845 241 AESVERTGDGVVVTLTD------GRTVEGSHALMAVGSVPNTAGLGLEEAGVELTPSGHITVDRVSRTSVPGIYAAGDCT 314 (466)
T ss_pred EEEEEEeCCEEEEEECC------CcEEEecEEEEeecCCcCCCCCCchhhCceECCCCcEeECCCcccCCCCEEEEeecc
Confidence 99998765666565543 357999999999999999998767889999999999999999999999999999999
Q ss_pred CCCCcHHHHHHHHHHHHHHhhCC
Q psy14927 1051 HGPMLAHKAEDEGIVCVEGIAGD 1073 (1074)
Q Consensus 1051 ~~~~~~~~A~~~G~~aA~~I~~~ 1073 (1074)
+.+++++.|..+|..|+.||++.
T Consensus 315 ~~~~l~~~A~~~g~~aa~~i~g~ 337 (466)
T PRK07845 315 GVLPLASVAAMQGRIAMYHALGE 337 (466)
T ss_pred CCccchhHHHHHHHHHHHHHcCC
Confidence 98889999999999999999974
No 17
>PRK06116 glutathione reductase; Validated
Probab=99.97 E-value=1.1e-30 Score=310.62 Aligned_cols=264 Identities=26% Similarity=0.403 Sum_probs=212.3
Q ss_pred hhhhhhccccchHHHHHHHhh-----hhhhhccccccc-------------------------------------cchhh
Q psy14927 795 QVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVK-------------------------------------LNLET 832 (1074)
Q Consensus 795 ~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~-------------------------------------~~~~~ 832 (1074)
.+|+||||||||++||+.+++ +++|+. ..||. ++|..
T Consensus 5 ~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~-~~GG~c~n~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 83 (450)
T PRK06116 5 YDLIVIGGGSGGIASANRAAMYGAKVALIEAK-RLGGTCVNVGCVPKKLMWYGAQIAEAFHDYAPGYGFDVTENKFDWAK 83 (450)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEecc-chhhhhhccCcchHHHHHHHHHHHHHHHhHHHhcCCCCCCCCcCHHH
Confidence 359999999999999999998 677764 44442 12222
Q ss_pred hhhhhhHHHhhhhhhHHHHhhhCCeEEEeeeEEEecCCeEEEEeCCCCeeEEEcCeEEEccCCCCCCCCCCCCCCcceec
Q psy14927 833 MMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGIEVDEETIVS 912 (1074)
Q Consensus 833 ~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~v~~id~~~~~v~~~~G~~~~i~~d~lIIATG~~p~~ipgi~~~~~~v~t 912 (1074)
+..+.......+...+...+.+.||+++.|+++++++..+++ +| .++.||+||||||++|. +|.+++. ..+++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~v~~~~v~~---~g--~~~~~d~lViATGs~p~-~p~i~g~-~~~~~ 156 (450)
T PRK06116 84 LIANRDAYIDRLHGSYRNGLENNGVDLIEGFARFVDAHTVEV---NG--ERYTADHILIATGGRPS-IPDIPGA-EYGIT 156 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEE---CC--EEEEeCEEEEecCCCCC-CCCCCCc-ceeEc
Confidence 222222333444455666777889999999999998876555 55 57999999999999984 3334432 24667
Q ss_pred hhhHhcchH-----------------hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEE
Q psy14927 913 STGALSLKK-----------------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGAS 975 (1074)
Q Consensus 913 ~~~~~~~~~-----------------A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~ 975 (1074)
+++++.... |..|.++|.+||++++++.++ +.+++++...+.+.|++.||++++++.|.+++
T Consensus 157 ~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l-~~~~~~~~~~l~~~L~~~GV~i~~~~~V~~i~ 235 (450)
T PRK06116 157 SDGFFALEELPKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPL-RGFDPDIRETLVEEMEKKGIRLHTNAVPKAVE 235 (450)
T ss_pred hhHhhCccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCc-cccCHHHHHHHHHHHHHCCcEEECCCEEEEEE
Confidence 776665442 888889999999999999888 78999999999999999999999999999998
Q ss_pred ecCCe-EEEEEeeccCCCCceEEEcCEEEEccCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEEecccCCCCC
Q psy14927 976 KSGDN-ITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGPM 1054 (1074)
Q Consensus 976 ~~~~~-~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~~~~~ 1054 (1074)
.++++ +.+.+.+ +.++++|.||+++|++|+++.+.+...|++++++|+|.||++++|++|||||+|||++.++
T Consensus 236 ~~~~g~~~v~~~~------g~~i~~D~Vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~Ts~~~IyA~GD~~~~~~ 309 (450)
T PRK06116 236 KNADGSLTLTLED------GETLTVDCLIWAIGREPNTDGLGLENAGVKLNEKGYIIVDEYQNTNVPGIYAVGDVTGRVE 309 (450)
T ss_pred EcCCceEEEEEcC------CcEEEeCEEEEeeCCCcCCCCCCchhcCceECCCCcEecCCCCCcCCCCEEEEeecCCCcC
Confidence 76444 5555443 3579999999999999999977678889999999999999999999999999999998888
Q ss_pred cHHHHHHHHHHHHHHhhCC
Q psy14927 1055 LAHKAEDEGIVCVEGIAGD 1073 (1074)
Q Consensus 1055 ~~~~A~~~G~~aA~~I~~~ 1073 (1074)
++..|..+|+.||.||+|.
T Consensus 310 ~~~~A~~~g~~aa~~i~g~ 328 (450)
T PRK06116 310 LTPVAIAAGRRLSERLFNN 328 (450)
T ss_pred cHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999873
No 18
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=99.97 E-value=2.7e-30 Score=308.57 Aligned_cols=273 Identities=34% Similarity=0.499 Sum_probs=218.7
Q ss_pred hhhhhhccccchHHHHHHHhh-----hhhhhcccccccc------------------------------------chhhh
Q psy14927 795 QVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKL------------------------------------NLETM 833 (1074)
Q Consensus 795 ~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~------------------------------------~~~~~ 833 (1074)
.+|+||||||||+.||+.+++ .++|+. ..||.. +|..+
T Consensus 5 ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~ 83 (472)
T PRK05976 5 YDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG-KLGGTCLHKGCIPSKALLHSAEVFQTAKKASPFGISVSGPALDFAKV 83 (472)
T ss_pred ccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCcceEcCCcCchHHHHHHHHHHHHHHHHHhcCccCCCCccCHHHH
Confidence 459999999999999999999 677764 344422 22222
Q ss_pred hhhhhHHHhhhhhhHHHHhhhCCeEEEeeeEEEecCC-------eEEEEeCCCCeeEEEcCeEEEccCCCCCCCCCCCCC
Q psy14927 834 MGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPN-------TVTVIKSDGSTEEVKTKNILIATGSEVTPFPGIEVD 906 (1074)
Q Consensus 834 ~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~v~~id~~-------~~~v~~~~G~~~~i~~d~lIIATG~~p~~ipgi~~~ 906 (1074)
..++....+.+...+...+++.||+++.|+++++|++ .+.|.+.+|+..++.||+||||||++|..+|+++..
T Consensus 84 ~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~a~~i~~~~~~~~~~~~~v~~~~g~~~~~~~d~lViATGs~p~~~p~~~~~ 163 (472)
T PRK05976 84 QERKDGIVDRLTKGVAALLKKGKIDVFHGIGRILGPSIFSPMPGTVSVETETGENEMIIPENLLIATGSRPVELPGLPFD 163 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeCCCCCcCCceEEEEEeCCCceEEEEcCEEEEeCCCCCCCCCCCCCC
Confidence 2333333344444456677788999999999999998 888888777546799999999999999767777655
Q ss_pred CcceechhhHhcchH-----------------hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCc
Q psy14927 907 EETIVSSTGALSLKK-----------------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGT 969 (1074)
Q Consensus 907 ~~~v~t~~~~~~~~~-----------------A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~ 969 (1074)
..+++++++++.+.. |..|+++|.+||++++.++++ +.+++++...+.+.|++.||++++++
T Consensus 164 ~~~~~~~~~~~~~~~~~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il-~~~~~~~~~~l~~~l~~~gI~i~~~~ 242 (472)
T PRK05976 164 GEYVISSDEALSLETLPKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRIL-PTEDAELSKEVARLLKKLGVRVVTGA 242 (472)
T ss_pred CceEEcchHhhCccccCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccC-CcCCHHHHHHHHHHHHhcCCEEEeCc
Confidence 666788888776543 888899999999999999998 78899999999999999999999999
Q ss_pred eEEEEEec-CCeEEEEEeeccCCCCceEEEcCEEEEccCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEEecc
Q psy14927 970 KVTGASKS-GDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGD 1048 (1074)
Q Consensus 970 ~v~~i~~~-~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD 1048 (1074)
.+.+++.. ++++.+.... +|+..++++|.||+++|++|+++.++++..++.. .+|+|.||++++|+.|+|||+||
T Consensus 243 ~v~~i~~~~~~~~~~~~~~---~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~-~~g~i~Vd~~l~ts~~~IyAiGD 318 (472)
T PRK05976 243 KVLGLTLKKDGGVLIVAEH---NGEEKTLEADKVLVSVGRRPNTEGIGLENTDIDV-EGGFIQIDDFCQTKERHIYAIGD 318 (472)
T ss_pred EEEEEEEecCCCEEEEEEe---CCceEEEEeCEEEEeeCCccCCCCCCchhcCcee-cCCEEEECCCcccCCCCEEEeee
Confidence 99999851 2333332222 2545689999999999999999876566677765 46899999999999999999999
Q ss_pred cCCCCCcHHHHHHHHHHHHHHhhCC
Q psy14927 1049 CIHGPMLAHKAEDEGIVCVEGIAGD 1073 (1074)
Q Consensus 1049 ~~~~~~~~~~A~~~G~~aA~~I~~~ 1073 (1074)
|++.++++..|..+|+.+|.||+|.
T Consensus 319 ~~~~~~~~~~A~~~g~~aa~~i~g~ 343 (472)
T PRK05976 319 VIGEPQLAHVAMAEGEMAAEHIAGK 343 (472)
T ss_pred cCCCcccHHHHHHHHHHHHHHHcCC
Confidence 9988889999999999999999874
No 19
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.97 E-value=3.5e-30 Score=307.15 Aligned_cols=275 Identities=31% Similarity=0.453 Sum_probs=215.1
Q ss_pred hhhhhhccccchHHHHHHHhh-----hhhhhccccccccchhhhhhh---------------------------------
Q psy14927 795 QVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLETMMGT--------------------------------- 836 (1074)
Q Consensus 795 ~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~~~~~~--------------------------------- 836 (1074)
.+|+||||||||+.||+.+++ +++|+....|..++..-+|..
T Consensus 5 ~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~~~GG~c~~~gciPsk~l~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~ 84 (466)
T PRK07818 5 YDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKKYWGGVCLNVGCIPSKALLRNAELAHIFTKEAKTFGISGEVTFDYGAAF 84 (466)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCceecCCccccHHHHhhHHHHHHHHHHHHhcCCCcCcccCHHHHH
Confidence 359999999999999999998 677765322222222111110
Q ss_pred --hhHHHhhhhhhHHHHhhhCCeEEEeeeEEEecCCeEEEEeCCCCeeEEEcCeEEEccCCCCCCCCCCCCCCcceechh
Q psy14927 837 --KSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGIEVDEETIVSST 914 (1074)
Q Consensus 837 --~~~~~~~l~~~~~~~l~~~gV~~~~g~v~~id~~~~~v~~~~G~~~~i~~d~lIIATG~~p~~ipgi~~~~~~v~t~~ 914 (1074)
.....+.+.......+...+|+++.|+++++++..+.|...+|+..++.||+||||||++|..+|+++.. ..+++++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~v~~i~g~~~~~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~~pg~~~~-~~v~~~~ 163 (466)
T PRK07818 85 DRSRKVAEGRVKGVHFLMKKNKITEIHGYGTFTDANTLEVDLNDGGTETVTFDNAIIATGSSTRLLPGTSLS-ENVVTYE 163 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEcCCCEEEEEecCCCeeEEEcCEEEEeCCCCCCCCCCCCCC-CcEEchH
Confidence 0001111111223344456999999999999999888887777556799999999999999767776422 3466666
Q ss_pred hHhcchH-----------------hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEec
Q psy14927 915 GALSLKK-----------------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKS 977 (1074)
Q Consensus 915 ~~~~~~~-----------------A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~ 977 (1074)
+.+.... |..++++|.+||++++.++++ +.+++++...+.+.|++.||++++++.|++++++
T Consensus 164 ~~~~~~~~~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l-~~~d~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~ 242 (466)
T PRK07818 164 EQILSRELPKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRAL-PNEDAEVSKEIAKQYKKLGVKILTGTKVESIDDN 242 (466)
T ss_pred HHhccccCCCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcC-CccCHHHHHHHHHHHHHCCCEEEECCEEEEEEEe
Confidence 5433221 888899999999999999998 7889999999999999999999999999999876
Q ss_pred CCeEEEEEeeccCCCCceEEEcCEEEEccCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEEecccCCCCCcHH
Q psy14927 978 GDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGPMLAH 1057 (1074)
Q Consensus 978 ~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~~~~~~~~ 1057 (1074)
++.+.+.+.+. +|+..++++|.||+++|++||+++++++..|++++++|+|.||++++|+.|||||+|||+..+++++
T Consensus 243 ~~~~~v~~~~~--~g~~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd~~~~Ts~p~IyAiGD~~~~~~l~~ 320 (466)
T PRK07818 243 GSKVTVTVSKK--DGKAQELEADKVLQAIGFAPRVEGYGLEKTGVALTDRGAIAIDDYMRTNVPHIYAIGDVTAKLQLAH 320 (466)
T ss_pred CCeEEEEEEec--CCCeEEEEeCEEEECcCcccCCCCCCchhcCcEECCCCcEeeCCCcccCCCCEEEEeecCCCcccHh
Confidence 65555665521 2444689999999999999999987778899999999999999999999999999999999888999
Q ss_pred HHHHHHHHHHHHhhCC
Q psy14927 1058 KAEDEGIVCVEGIAGD 1073 (1074)
Q Consensus 1058 ~A~~~G~~aA~~I~~~ 1073 (1074)
.|..+|+.||.||++.
T Consensus 321 ~A~~~g~~aa~~i~g~ 336 (466)
T PRK07818 321 VAEAQGVVAAETIAGA 336 (466)
T ss_pred HHHHHHHHHHHHHcCC
Confidence 9999999999999974
No 20
>PRK06370 mercuric reductase; Validated
Probab=99.97 E-value=3.7e-30 Score=306.96 Aligned_cols=268 Identities=28% Similarity=0.447 Sum_probs=212.7
Q ss_pred hhhhhhccccchHHHHHHHhh-----hhhhhccccccccch------------------------------------hhh
Q psy14927 795 QVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNL------------------------------------ETM 833 (1074)
Q Consensus 795 ~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~------------------------------------~~~ 833 (1074)
.+||||||||||++||+.+++ +++|+....|..+++ ..+
T Consensus 6 ~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~ 85 (463)
T PRK06370 6 YDAIVIGAGQAGPPLAARAAGLGMKVALIERGLLGGTCVNTGCVPTKTLIASARAAHLARRAAEYGVSVGGPVSVDFKAV 85 (463)
T ss_pred ccEEEECCCHHHHHHHHHHHhCCCeEEEEecCccCCceeccccCcHHHHHHHHHHHHHHHHHHhcCcccCccCccCHHHH
Confidence 459999999999999999998 678875433332222 222
Q ss_pred hhhhhHHHhhhhhhHHHHhhhC-CeEEEeeeEEEecCCeEEEEeCCCCeeEEEcCeEEEccCCCCC--CCCCCCCCCcce
Q psy14927 834 MGTKSAAVKALTGGIAHLFKSN-KVTQLNGHGKITGPNTVTVIKSDGSTEEVKTKNILIATGSEVT--PFPGIEVDEETI 910 (1074)
Q Consensus 834 ~~~~~~~~~~l~~~~~~~l~~~-gV~~~~g~v~~id~~~~~v~~~~G~~~~i~~d~lIIATG~~p~--~ipgi~~~~~~v 910 (1074)
..+.....+.+...+...+++. ||+++.|+++++++..+.+ +| .++.||+||||||++|. ++||+ +...+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~gv~v~~g~~~~~~~~~v~v---~~--~~~~~d~lViATGs~p~~p~i~G~--~~~~~ 158 (463)
T PRK06370 86 MARKRRIRARSRHGSEQWLRGLEGVDVFRGHARFESPNTVRV---GG--ETLRAKRIFINTGARAAIPPIPGL--DEVGY 158 (463)
T ss_pred HHHHHHHHHHHHHhHHHHHhcCCCcEEEEEEEEEccCCEEEE---Cc--EEEEeCEEEEcCCCCCCCCCCCCC--CcCce
Confidence 2222222233334456677777 9999999888888776655 34 57999999999999984 34443 23456
Q ss_pred echhhHhcchH-----------------hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEE
Q psy14927 911 VSSTGALSLKK-----------------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTG 973 (1074)
Q Consensus 911 ~t~~~~~~~~~-----------------A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~ 973 (1074)
+++++++.... |..|.+.|.+||++++.+.++ +.+++++.+.+.+.|++.||++++++.+.+
T Consensus 159 ~~~~~~~~~~~~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l-~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~ 237 (463)
T PRK06370 159 LTNETIFSLDELPEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLL-PREDEDVAAAVREILEREGIDVRLNAECIR 237 (463)
T ss_pred EcchHhhCccccCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCC-cccCHHHHHHHHHHHHhCCCEEEeCCEEEE
Confidence 77777765432 888899999999999999998 778999999999999999999999999999
Q ss_pred EEecCCeEEEEEeeccCCCCceEEEcCEEEEccCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEEecccCCCC
Q psy14927 974 ASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGP 1053 (1074)
Q Consensus 974 i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~~~~ 1053 (1074)
+++++++..+.+.. ++.+.++++|.||+|+|++|+++.++++..|++++++|+|.||+++||++|||||+|||++.+
T Consensus 238 i~~~~~~~~v~~~~---~~~~~~i~~D~Vi~A~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~l~t~~~~IyAiGD~~~~~ 314 (463)
T PRK06370 238 VERDGDGIAVGLDC---NGGAPEITGSHILVAVGRVPNTDDLGLEAAGVETDARGYIKVDDQLRTTNPGIYAAGDCNGRG 314 (463)
T ss_pred EEEcCCEEEEEEEe---CCCceEEEeCEEEECcCCCcCCCCcCchhhCceECCCCcEeECcCCcCCCCCEEEeeecCCCc
Confidence 98866665555543 233568999999999999999996667888999999999999999999999999999999988
Q ss_pred CcHHHHHHHHHHHHHHhhCC
Q psy14927 1054 MLAHKAEDEGIVCVEGIAGD 1073 (1074)
Q Consensus 1054 ~~~~~A~~~G~~aA~~I~~~ 1073 (1074)
.+++.|..||++||.||++.
T Consensus 315 ~~~~~A~~~g~~aa~ni~~~ 334 (463)
T PRK06370 315 AFTHTAYNDARIVAANLLDG 334 (463)
T ss_pred ccHHHHHHHHHHHHHHHhCC
Confidence 89999999999999999864
No 21
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=99.97 E-value=5e-30 Score=304.10 Aligned_cols=269 Identities=26% Similarity=0.385 Sum_probs=210.1
Q ss_pred hhhhhhccccchHHHHHHHhh-----hhhhhcc-ccccccc-hhhh------------------hhhhhHHHhhhhhhH-
Q psy14927 795 QVVLNTLGNCAAVQANYHLAT-----KLFTQAG-DKGVKLN-LETM------------------MGTKSAAVKALTGGI- 848 (1074)
Q Consensus 795 ~~VviiGgG~AGl~aA~~la~-----~l~e~~~-~~g~~~~-~~~~------------------~~~~~~~~~~l~~~~- 848 (1074)
.+||||||||||++||+.+++ +++|+.+ ..|+... ..-+ ..+.....+.+....
T Consensus 4 yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~~~GG~~~~~gcip~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (441)
T PRK08010 4 YQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCINIGCIPTKTLVHDAQQHTDFVRAIQRKNEVVNFLRNKNF 83 (441)
T ss_pred CCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCCccceeEeeccccchHHHHHHhccCCCHHHHHHHHHHHHHHHHHhHH
Confidence 359999999999999999998 7888765 3455431 1111 111111111121111
Q ss_pred HHHhhhCCeEEEeeeEEEecCCeEEEEeCCCCeeEEEcCeEEEccCCCCC--CCCCCCCCCcceechhhHhcchH-----
Q psy14927 849 AHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEVKTKNILIATGSEVT--PFPGIEVDEETIVSSTGALSLKK----- 921 (1074)
Q Consensus 849 ~~~l~~~gV~~~~g~v~~id~~~~~v~~~~G~~~~i~~d~lIIATG~~p~--~ipgi~~~~~~v~t~~~~~~~~~----- 921 (1074)
....+..||+++.|++++++++.+.|.+.+|. .++.||+||||||++|. ++||+.. ...++++.+++....
T Consensus 84 ~~~~~~~gv~~~~g~~~~i~~~~~~v~~~~g~-~~~~~d~lviATGs~p~~p~i~G~~~-~~~v~~~~~~~~~~~~~~~v 161 (441)
T PRK08010 84 HNLADMPNIDVIDGQAEFINNHSLRVHRPEGN-LEIHGEKIFINTGAQTVVPPIPGITT-TPGVYDSTGLLNLKELPGHL 161 (441)
T ss_pred HHHhhcCCcEEEEEEEEEecCCEEEEEeCCCe-EEEEeCEEEEcCCCcCCCCCCCCccC-CCCEEChhHhhcccccCCeE
Confidence 22233449999999999999998988877762 36999999999999983 3444421 234677777665433
Q ss_pred ------------hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEEeecc
Q psy14927 922 ------------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVK 989 (1074)
Q Consensus 922 ------------A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~ 989 (1074)
|..|.++|.+||++++++.++ +.+++++...+.+.|++.||++++++.+.+++.+++.+.+...+
T Consensus 162 ~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l-~~~~~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~~~v~v~~~~-- 238 (441)
T PRK08010 162 GILGGGYIGVEFASMFANFGSKVTILEAASLFL-PREDRDIADNIATILRDQGVDIILNAHVERISHHENQVQVHSEH-- 238 (441)
T ss_pred EEECCCHHHHHHHHHHHHCCCeEEEEecCCCCC-CCcCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEcC--
Confidence 788889999999999999988 77899999999999999999999999999998765555444221
Q ss_pred CCCCceEEEcCEEEEccCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEEecccCCCCCcHHHHHHHHHHHHHH
Q psy14927 990 DPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGPMLAHKAEDEGIVCVEG 1069 (1074)
Q Consensus 990 ~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~~~~~~~~~A~~~G~~aA~~ 1069 (1074)
.++++|.|++++|++||++++.+..+|++++++|+|.||++++|++|||||+|||++.+++++.|..+|+.++.|
T Consensus 239 -----g~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd~~~~Ts~~~IyA~GD~~~~~~~~~~a~~~~~~~~~~ 313 (441)
T PRK08010 239 -----AQLAVDALLIASGRQPATASLHPENAGIAVNERGAIVVDKYLHTTADNIWAMGDVTGGLQFTYISLDDYRIVRDE 313 (441)
T ss_pred -----CeEEeCEEEEeecCCcCCCCcCchhcCcEECCCCcEEECCCcccCCCCEEEeeecCCCccchhHHHHHHHHHHHH
Confidence 258999999999999999987677889999999999999999999999999999999989999999999999999
Q ss_pred hhCC
Q psy14927 1070 IAGD 1073 (1074)
Q Consensus 1070 I~~~ 1073 (1074)
|+|.
T Consensus 314 ~~g~ 317 (441)
T PRK08010 314 LLGE 317 (441)
T ss_pred HcCC
Confidence 9973
No 22
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=99.97 E-value=7.7e-30 Score=304.39 Aligned_cols=268 Identities=30% Similarity=0.470 Sum_probs=213.8
Q ss_pred hhhhhccccchHHHHHHHhh-----hhhhhccccccc-c----------------------------------chhhhhh
Q psy14927 796 VVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVK-L----------------------------------NLETMMG 835 (1074)
Q Consensus 796 ~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~-~----------------------------------~~~~~~~ 835 (1074)
+||||||||+|+.||..+++ +++|+.. .||. + +|..+..
T Consensus 2 DvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~-~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 80 (463)
T TIGR02053 2 DLVIIGSGAAAFAAAIKAAELGASVAMVERGP-LGGTCVNVGCVPSKMLLRAAEVAHYARKPPFGGLAATVAVDFGELLE 80 (463)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc-ccCCeeeecEEccHHHHHHHHHHHHhhccCcccccCCCccCHHHHHH
Confidence 48999999999999999999 6778754 3332 2 2222333
Q ss_pred hhhHHHhhhhh-hHHHHhhhCCeEEEeeeEEEecCCeEEEEeCCCCeeEEEcCeEEEccCCCCC--CCCCCCCCCcceec
Q psy14927 836 TKSAAVKALTG-GIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEVKTKNILIATGSEVT--PFPGIEVDEETIVS 912 (1074)
Q Consensus 836 ~~~~~~~~l~~-~~~~~l~~~gV~~~~g~v~~id~~~~~v~~~~G~~~~i~~d~lIIATG~~p~--~ipgi~~~~~~v~t 912 (1074)
+.+.....+.. .+...+++.||+++.|+++++++..+.+ .+| ...+.||+||||||++|. ++||++ ...+++
T Consensus 81 ~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~~~~~~v~v--~~g-~~~~~~~~lIiATGs~p~~p~i~G~~--~~~~~~ 155 (463)
T TIGR02053 81 GKREVVEELRHEKYEDVLSSYGVDYLRGRARFKDPKTVKV--DLG-REVRGAKRFLIATGARPAIPPIPGLK--EAGYLT 155 (463)
T ss_pred HHHHHHHHHhhhhHHHHHHhCCcEEEEEEEEEccCCEEEE--cCC-eEEEEeCEEEEcCCCCCCCCCCCCcc--cCceEC
Confidence 33333333432 2556778889999999998888765544 454 246899999999999984 344442 234677
Q ss_pred hhhHhcchH-----------------hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEE
Q psy14927 913 STGALSLKK-----------------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGAS 975 (1074)
Q Consensus 913 ~~~~~~~~~-----------------A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~ 975 (1074)
+++++.... |..|.++|.+||++++.++++ +.+++++...+.+.|++.||+++++++|+++.
T Consensus 156 ~~~~~~~~~~~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l-~~~d~~~~~~l~~~l~~~gV~i~~~~~V~~i~ 234 (463)
T TIGR02053 156 SEEALALDRIPESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLL-PREEPEISAAVEEALAEEGIEVVTSAQVKAVS 234 (463)
T ss_pred chhhhCcccCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCC-CccCHHHHHHHHHHHHHcCCEEEcCcEEEEEE
Confidence 777765432 888899999999999999998 78999999999999999999999999999998
Q ss_pred ecCCeEEEEEeeccCCCCceEEEcCEEEEccCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEEecccCCCCCc
Q psy14927 976 KSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGPML 1055 (1074)
Q Consensus 976 ~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~~~~~~ 1055 (1074)
.+++...+++.+ ++.+.++++|.||+|+|++|+++.+++...+++++++|+|.||+++||+.|||||+|||++.+.+
T Consensus 235 ~~~~~~~v~~~~---~~~~~~i~~D~ViiA~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~Ts~~~VyAiGD~~~~~~~ 311 (463)
T TIGR02053 235 VRGGGKIITVEK---PGGQGEVEADELLVATGRRPNTDGLGLEKAGVKLDERGGILVDETLRTSNPGIYAAGDVTGGLQL 311 (463)
T ss_pred EcCCEEEEEEEe---CCCceEEEeCEEEEeECCCcCCCCCCccccCCEECCCCcEeECCCccCCCCCEEEeeecCCCccc
Confidence 765555565543 23357899999999999999999666788899999999999999999999999999999999889
Q ss_pred HHHHHHHHHHHHHHhhCC
Q psy14927 1056 AHKAEDEGIVCVEGIAGD 1073 (1074)
Q Consensus 1056 ~~~A~~~G~~aA~~I~~~ 1073 (1074)
++.|..||++||.||++.
T Consensus 312 ~~~A~~~g~~aa~ni~~~ 329 (463)
T TIGR02053 312 EYVAAKEGVVAAENALGG 329 (463)
T ss_pred HhHHHHHHHHHHHHhcCC
Confidence 999999999999999874
No 23
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=99.97 E-value=6.7e-30 Score=304.03 Aligned_cols=272 Identities=21% Similarity=0.336 Sum_probs=217.9
Q ss_pred hhhhhccccchHHHHHHHhh-----hhhhhc-----c---ccccc-----------------------------------
Q psy14927 796 VVLNTLGNCAAVQANYHLAT-----KLFTQA-----G---DKGVK----------------------------------- 827 (1074)
Q Consensus 796 ~VviiGgG~AGl~aA~~la~-----~l~e~~-----~---~~g~~----------------------------------- 827 (1074)
+||||||||+|+.+|+.+++ .++++. . ..||.
T Consensus 4 DvvVIG~G~aG~~aA~~aa~~G~~v~lie~~~~~~~~~~~~~GGtc~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~ 83 (484)
T TIGR01438 4 DLIVIGGGSGGLAAAKEAADYGAKVMLLDFVTPTPLGTRWGIGGTCVNVGCIPKKLMHQAALLGQALKDSRNYGWNVEET 83 (484)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCcceeccccccccCcCchhHHHHHHHHHHHHhhhhhcCcccCCC
Confidence 49999999999999999998 567742 1 12331
Q ss_pred --cchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEeeeEEEecCCeEEEEeCCCCeeEEEcCeEEEccCCCCCCCCCCCC
Q psy14927 828 --LNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGIEV 905 (1074)
Q Consensus 828 --~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~v~~id~~~~~v~~~~G~~~~i~~d~lIIATG~~p~~ipgi~~ 905 (1074)
++|..+..++......+...+...++..||+++.|++.+++++.+.|...+|...+++||+||||||++|. +|.+++
T Consensus 84 ~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G~a~f~~~~~v~v~~~~g~~~~~~~d~lVIATGs~p~-~p~ipG 162 (484)
T TIGR01438 84 VKHDWNRLSEAVQNHIGSLNWGYRVALREKKVNYENAYAEFVDKHRIKATNKKGKEKIYSAERFLIATGERPR-YPGIPG 162 (484)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEcCCCEEEEeccCCCceEEEeCEEEEecCCCCC-CCCCCC
Confidence 12333344444455555556677788899999999999999998888765664467999999999999984 334554
Q ss_pred CCcceechhhHhcchH-----------------hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeC
Q psy14927 906 DEETIVSSTGALSLKK-----------------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLG 968 (1074)
Q Consensus 906 ~~~~v~t~~~~~~~~~-----------------A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~ 968 (1074)
.....+++++++.+.. |..|+++|.+||++.+ +.++ +.+++++.+.+.+.|++.||+++++
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~-~~~l-~~~d~~~~~~l~~~L~~~gV~i~~~ 240 (484)
T TIGR01438 163 AKELCITSDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVR-SILL-RGFDQDCANKVGEHMEEHGVKFKRQ 240 (484)
T ss_pred ccceeecHHHhhcccccCCCEEEECCCHHHHHHHHHHHHhCCcEEEEEe-cccc-cccCHHHHHHHHHHHHHcCCEEEeC
Confidence 4345567777765443 8888999999999987 5677 7899999999999999999999999
Q ss_pred ceEEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccCCcccCCccCccccCcccCC-CCCeeeCCCCCCCCCCEEEec
Q psy14927 969 TKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDE-KGRVPVNSRFQTVIPNIFAIG 1047 (1074)
Q Consensus 969 ~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~-~G~I~Vd~~~~ts~~~IyAiG 1047 (1074)
+.+.++...++.+.+++.+ ++++.++++|.||+++|++||+++++++..|+++++ +|+|.||++++|++|||||+|
T Consensus 241 ~~v~~v~~~~~~~~v~~~~---~~~~~~i~~D~vl~a~G~~pn~~~l~l~~~gv~~~~~~G~I~Vd~~~~Ts~p~IyA~G 317 (484)
T TIGR01438 241 FVPIKVEQIEAKVKVTFTD---STNGIEEEYDTVLLAIGRDACTRKLNLENVGVKINKKTGKIPADEEEQTNVPYIYAVG 317 (484)
T ss_pred ceEEEEEEcCCeEEEEEec---CCcceEEEeCEEEEEecCCcCCCcCCcccccceecCcCCeEecCCCcccCCCCEEEEE
Confidence 9999998765555666654 122357999999999999999998878899999876 599999999999999999999
Q ss_pred ccCC-CCCcHHHHHHHHHHHHHHhhCC
Q psy14927 1048 DCIH-GPMLAHKAEDEGIVCVEGIAGD 1073 (1074)
Q Consensus 1048 D~~~-~~~~~~~A~~~G~~aA~~I~~~ 1073 (1074)
||+. .+.+++.|..+|+.+|.||++.
T Consensus 318 Dv~~~~~~l~~~A~~~g~~aa~~i~~~ 344 (484)
T TIGR01438 318 DILEDKQELTPVAIQAGRLLAQRLFSG 344 (484)
T ss_pred EecCCCccchHHHHHHHHHHHHHHhcC
Confidence 9996 5778999999999999999863
No 24
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=99.97 E-value=8.6e-30 Score=304.11 Aligned_cols=274 Identities=38% Similarity=0.627 Sum_probs=215.5
Q ss_pred hhhhhhccccchHHHHHHHhh-----hhhhh------cccccccc-c---------------------------------
Q psy14927 795 QVVLNTLGNCAAVQANYHLAT-----KLFTQ------AGDKGVKL-N--------------------------------- 829 (1074)
Q Consensus 795 ~~VviiGgG~AGl~aA~~la~-----~l~e~------~~~~g~~~-~--------------------------------- 829 (1074)
.+|+||||||||+.||+++++ .++|+ ....|+.. +
T Consensus 5 ~DviIIG~G~aG~~aA~~~~~~g~~v~lie~~~~~~g~~~~Gg~c~n~gc~P~k~l~~~a~~~~~~~~~~~~~G~~~~~~ 84 (475)
T PRK06327 5 FDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKNPKGKPALGGTCLNVGCIPSKALLASSEEFENAGHHFADHGIHVDGV 84 (475)
T ss_pred eeEEEECCCHHHHHHHHHHHhCCCeEEEEecccCCCCCCCcCCccccccccHHHHHHHHHHHHHHHHhhHHhcCccCCCC
Confidence 359999999999999999999 67776 13333321 1
Q ss_pred ---hhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEeeeEEEec----CCeEEEEeCCCCeeEEEcCeEEEccCCCCCCCCC
Q psy14927 830 ---LETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITG----PNTVTVIKSDGSTEEVKTKNILIATGSEVTPFPG 902 (1074)
Q Consensus 830 ---~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~v~~id----~~~~~v~~~~G~~~~i~~d~lIIATG~~p~~ipg 902 (1074)
|..+..+.+...+.+...+...++..||+++.|++++++ +..+.+...++ .+++||+||||||++|..+|+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~v~v~~~~~--~~~~~d~lViATGs~p~~~p~ 162 (475)
T PRK06327 85 KIDVAKMIARKDKVVKKMTGGIEGLFKKNKITVLKGRGSFVGKTDAGYEIKVTGEDE--TVITAKHVIIATGSEPRHLPG 162 (475)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEecCCCCCCEEEEecCCC--eEEEeCEEEEeCCCCCCCCCC
Confidence 111111112222233334556677789999999998887 34444432333 579999999999999976777
Q ss_pred CCCCCcceechhhHhcchH-----------------hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEE
Q psy14927 903 IEVDEETIVSSTGALSLKK-----------------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQF 965 (1074)
Q Consensus 903 i~~~~~~v~t~~~~~~~~~-----------------A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i 965 (1074)
++.....++++++++.+.. |..+.++|.+||++++.+.++ +.+++++...+.+.|++.||++
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l-~~~d~~~~~~~~~~l~~~gi~i 241 (475)
T PRK06327 163 VPFDNKIILDNTGALNFTEVPKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFL-AAADEQVAKEAAKAFTKQGLDI 241 (475)
T ss_pred CCCCCceEECcHHHhcccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccC-CcCCHHHHHHHHHHHHHcCcEE
Confidence 7655566777777665432 788889999999999999998 6789999999999999999999
Q ss_pred EeCceEEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEE
Q psy14927 966 KLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFA 1045 (1074)
Q Consensus 966 ~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyA 1045 (1074)
++++.|.+++.+++++.+.+.+. +|+..++++|.||+++|++|+++++.++.+|++++++|+|.||++++|+.|||||
T Consensus 242 ~~~~~v~~i~~~~~~v~v~~~~~--~g~~~~i~~D~vl~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~~~Ts~~~VyA 319 (475)
T PRK06327 242 HLGVKIGEIKTGGKGVSVAYTDA--DGEAQTLEVDKLIVSIGRVPNTDGLGLEAVGLKLDERGFIPVDDHCRTNVPNVYA 319 (475)
T ss_pred EeCcEEEEEEEcCCEEEEEEEeC--CCceeEEEcCEEEEccCCccCCCCCCcHhhCceeCCCCeEeECCCCccCCCCEEE
Confidence 99999999988766666666542 2444689999999999999999976677889999999999999999999999999
Q ss_pred ecccCCCCCcHHHHHHHHHHHHHHhhCC
Q psy14927 1046 IGDCIHGPMLAHKAEDEGIVCVEGIAGD 1073 (1074)
Q Consensus 1046 iGD~~~~~~~~~~A~~~G~~aA~~I~~~ 1073 (1074)
+|||+..|++++.|..+|..||.||++.
T Consensus 320 ~GD~~~~~~~~~~A~~~G~~aa~~i~g~ 347 (475)
T PRK06327 320 IGDVVRGPMLAHKAEEEGVAVAERIAGQ 347 (475)
T ss_pred EEeccCCcchHHHHHHHHHHHHHHHcCC
Confidence 9999998889999999999999999874
No 25
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=99.97 E-value=8.6e-30 Score=302.25 Aligned_cols=270 Identities=27% Similarity=0.391 Sum_probs=213.8
Q ss_pred hhhhhhccccchHHHHHHHhh------hhhhhc--------cccccc---------------------------------
Q psy14927 795 QVVLNTLGNCAAVQANYHLAT------KLFTQA--------GDKGVK--------------------------------- 827 (1074)
Q Consensus 795 ~~VviiGgG~AGl~aA~~la~------~l~e~~--------~~~g~~--------------------------------- 827 (1074)
.+|+||||||+|..||+.+++ .++|+. ...||.
T Consensus 4 ~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~~~~~~~~~~~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~gi~~~ 83 (486)
T TIGR01423 4 FDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQTHHGPPHYAALGGTCVNVGCVPKKLMVTGAQYMDTLRESAGFGWEFD 83 (486)
T ss_pred cCEEEECCChHHHHHHHHHHHhcCCEEEEEecccCccccccCCccCeecCcCCccHHHHHHHHHHHHHHHHhhccCeecc
Confidence 459999999999999999987 466752 234431
Q ss_pred -----cchhhhhhhhhHHHhhhhhhHHHHhhh-CCeEEEeeeEEEecCCeEEEEeCC-C---CeeEEEcCeEEEccCCCC
Q psy14927 828 -----LNLETMMGTKSAAVKALTGGIAHLFKS-NKVTQLNGHGKITGPNTVTVIKSD-G---STEEVKTKNILIATGSEV 897 (1074)
Q Consensus 828 -----~~~~~~~~~~~~~~~~l~~~~~~~l~~-~gV~~~~g~v~~id~~~~~v~~~~-G---~~~~i~~d~lIIATG~~p 897 (1074)
++|..+..+++.....+...+...++. .||+++.|++++++++.+.|.... + ...++.||+||||||++|
T Consensus 84 ~~~~~~d~~~~~~~~~~~v~~~~~~~~~~l~~~~gv~~i~G~a~f~~~~~v~V~~~~~~~~~~~~~~~~d~lIIATGs~p 163 (486)
T TIGR01423 84 RSSVKANWKALIAAKNKAVLDINKSYEGMFADTEGLTFFLGWGALEDKNVVLVRESADPKSAVKERLQAEHILLATGSWP 163 (486)
T ss_pred CCccccCHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEEEEEccCCEEEEeeccCCCCCcceEEECCEEEEecCCCC
Confidence 133334444455555565666677776 499999999999999888886421 1 125799999999999998
Q ss_pred CCCCCCCCCCcceechhhHhcchH-----------------hhHHhhc---CCcEEEEecCCccCCCCCCHHHHHHHHHH
Q psy14927 898 TPFPGIEVDEETIVSSTGALSLKK-----------------GSVWGRL---GAEVTAIEFMNAIGGMGIDGEVAKQFQRI 957 (1074)
Q Consensus 898 ~~ipgi~~~~~~v~t~~~~~~~~~-----------------A~~l~~~---G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~ 957 (1074)
. .|.+++. ..++++++++.+.. |..+..+ |.+|||+++.++++ +.+++++.+.+.+.
T Consensus 164 ~-~p~i~G~-~~~~~~~~~~~~~~~~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il-~~~d~~~~~~l~~~ 240 (486)
T TIGR01423 164 Q-MLGIPGI-EHCISSNEAFYLDEPPRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMIL-RGFDSTLRKELTKQ 240 (486)
T ss_pred C-CCCCCCh-hheechhhhhccccCCCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCccc-cccCHHHHHHHHHH
Confidence 4 3334432 23567777665543 5555454 99999999999998 78999999999999
Q ss_pred HHhCCCEEEeCceEEEEEecCCe-EEEEEeeccCCCCceEEEcCEEEEccCCcccCCccCccccCcccCCCCCeeeCCCC
Q psy14927 958 LGKQGMQFKLGTKVTGASKSGDN-ITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRF 1036 (1074)
Q Consensus 958 l~~~gV~i~~~~~v~~i~~~~~~-~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~ 1036 (1074)
|++.||++++++.++++..++++ ..+.+.+ +.++++|.||+++|++|+++++.++..|++++++|+|.||+++
T Consensus 241 L~~~GI~i~~~~~v~~i~~~~~~~~~v~~~~------g~~i~~D~vl~a~G~~Pn~~~l~l~~~gl~~~~~G~I~Vd~~l 314 (486)
T TIGR01423 241 LRANGINIMTNENPAKVTLNADGSKHVTFES------GKTLDVDVVMMAIGRVPRTQTLQLDKVGVELTKKGAIQVDEFS 314 (486)
T ss_pred HHHcCCEEEcCCEEEEEEEcCCceEEEEEcC------CCEEEcCEEEEeeCCCcCcccCCchhhCceECCCCCEecCCCC
Confidence 99999999999999999865443 4555543 3479999999999999999987778899999999999999999
Q ss_pred CCCCCCEEEecccCCCCCcHHHHHHHHHHHHHHhhCC
Q psy14927 1037 QTVIPNIFAIGDCIHGPMLAHKAEDEGIVCVEGIAGD 1073 (1074)
Q Consensus 1037 ~ts~~~IyAiGD~~~~~~~~~~A~~~G~~aA~~I~~~ 1073 (1074)
||++|||||+|||++.+++++.|..||+++|.||++.
T Consensus 315 ~Ts~~~IyA~GDv~~~~~l~~~A~~qG~~aa~ni~g~ 351 (486)
T TIGR01423 315 RTNVPNIYAIGDVTDRVMLTPVAINEGAAFVDTVFGN 351 (486)
T ss_pred cCCCCCEEEeeecCCCcccHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999974
No 26
>PLN02546 glutathione reductase
Probab=99.97 E-value=7.3e-30 Score=305.79 Aligned_cols=266 Identities=28% Similarity=0.419 Sum_probs=216.7
Q ss_pred chhhhhhccccchHHHHHHHhh-----hhhhhc---------ccccc---------------------------------
Q psy14927 794 RQVVLNTLGNCAAVQANYHLAT-----KLFTQA---------GDKGV--------------------------------- 826 (1074)
Q Consensus 794 k~~VviiGgG~AGl~aA~~la~-----~l~e~~---------~~~g~--------------------------------- 826 (1074)
..+|+||||||+|+.||+.+++ .++|+. ...||
T Consensus 79 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~~~~~~~~~~~GGtC~n~GCiPsK~l~~aa~~~~~~~~~~~~g~~~ 158 (558)
T PLN02546 79 DFDLFTIGAGSGGVRASRFASNFGASAAVCELPFATISSDTLGGVGGTCVLRGCVPKKLLVYASKYSHEFEESRGFGWKY 158 (558)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCccCcccCcchHHHHHHHHHHHHHHHHHhhhhcCccc
Confidence 3469999999999999999998 677741 12222
Q ss_pred ----ccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEeeeEEEecCCeEEEEeCCCCeeEEEcCeEEEccCCCCCCCCC
Q psy14927 827 ----KLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEVKTKNILIATGSEVTPFPG 902 (1074)
Q Consensus 827 ----~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~v~~id~~~~~v~~~~G~~~~i~~d~lIIATG~~p~~ipg 902 (1074)
.++|..+..++......+..++...+++.||+++.|++++++++.+.+ +| .++.||+||||||++|. +|.
T Consensus 159 ~~~~~~d~~~~~~~k~~~~~~l~~~~~~~l~~~gV~~i~G~a~~vd~~~V~v---~G--~~~~~D~LVIATGs~p~-~P~ 232 (558)
T PLN02546 159 ETEPKHDWNTLIANKNAELQRLTGIYKNILKNAGVTLIEGRGKIVDPHTVDV---DG--KLYTARNILIAVGGRPF-IPD 232 (558)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEccCCEEEE---CC--EEEECCEEEEeCCCCCC-CCC
Confidence 235555555666666777777888899999999999999999986655 45 57999999999999984 333
Q ss_pred CCCCCcceechhhHhcchH-----------------hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEE
Q psy14927 903 IEVDEETIVSSTGALSLKK-----------------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQF 965 (1074)
Q Consensus 903 i~~~~~~v~t~~~~~~~~~-----------------A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i 965 (1074)
+++. ..++++++++.... |..|..+|.+||++++.+.++ +.++++++..+.+.|++.||++
T Consensus 233 IpG~-~~v~~~~~~l~~~~~~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il-~~~d~~~~~~l~~~L~~~GV~i 310 (558)
T PLN02546 233 IPGI-EHAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVL-RGFDEEVRDFVAEQMSLRGIEF 310 (558)
T ss_pred CCCh-hhccCHHHHHhccccCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeccccc-cccCHHHHHHHHHHHHHCCcEE
Confidence 4432 24677777765432 788889999999999999988 7899999999999999999999
Q ss_pred EeCceEEEEEecCCe-EEEEEeeccCCCCceEEEcCEEEEccCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEE
Q psy14927 966 KLGTKVTGASKSGDN-ITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIF 1044 (1074)
Q Consensus 966 ~~~~~v~~i~~~~~~-~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~Iy 1044 (1074)
++++.+.++...+++ +.+. . +.+..+.+|.||+++|++||++++.++.+|++++++|+|.||+++||++||||
T Consensus 311 ~~~~~v~~i~~~~~g~v~v~--~----~~g~~~~~D~Viva~G~~Pnt~~L~le~~gl~~d~~G~I~VD~~l~Ts~p~IY 384 (558)
T PLN02546 311 HTEESPQAIIKSADGSLSLK--T----NKGTVEGFSHVMFATGRKPNTKNLGLEEVGVKMDKNGAIEVDEYSRTSVPSIW 384 (558)
T ss_pred EeCCEEEEEEEcCCCEEEEE--E----CCeEEEecCEEEEeeccccCCCcCChhhcCCcCCCCCcEeECCCceeCCCCEE
Confidence 999999999864333 3333 2 12344569999999999999998767889999999999999999999999999
Q ss_pred EecccCCCCCcHHHHHHHHHHHHHHhhCC
Q psy14927 1045 AIGDCIHGPMLAHKAEDEGIVCVEGIAGD 1073 (1074)
Q Consensus 1045 AiGD~~~~~~~~~~A~~~G~~aA~~I~~~ 1073 (1074)
|+|||++.+++++.|..+|+.+|.||++.
T Consensus 385 AaGDv~~~~~l~~~A~~~g~~~a~~i~g~ 413 (558)
T PLN02546 385 AVGDVTDRINLTPVALMEGGALAKTLFGN 413 (558)
T ss_pred EeeccCCCcccHHHHHHHHHHHHHHHcCC
Confidence 99999999889999999999999999974
No 27
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=99.97 E-value=1.2e-29 Score=301.76 Aligned_cols=270 Identities=31% Similarity=0.442 Sum_probs=215.9
Q ss_pred hhhhhccccchHHHHHHHhh-----hhhhhccccccc-------------------------------------cchhhh
Q psy14927 796 VVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVK-------------------------------------LNLETM 833 (1074)
Q Consensus 796 ~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~-------------------------------------~~~~~~ 833 (1074)
+|+||||||||+.||..+++ +++|+....|.. ++|..+
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~~GG~c~n~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 81 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEADLGGTCLNEGCMPTKSLLESAEVHDKVKKANHFGITLPNGSISIDWKQM 81 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccccCCCCccccchHHHHHHHHHHHHHHHHhcCccccCCCCccCHHHH
Confidence 38999999999999999998 677764322211 123333
Q ss_pred hhhhhHHHhhhhhhHHHHhhhCCeEEEeeeEEEecCCeEEEEeCCCCeeEEEcCeEEEccCCCCCCCCCCCCCCcceech
Q psy14927 834 MGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGIEVDEETIVSS 913 (1074)
Q Consensus 834 ~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~v~~id~~~~~v~~~~G~~~~i~~d~lIIATG~~p~~ipgi~~~~~~v~t~ 913 (1074)
..+.+...+.+.......++..+|+++.|++.+++++.+.|..++| ..+++||+||||||++|..+|..+.....++++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~v~v~~~~~-~~~~~~d~lviATGs~p~~~p~~~~~~~~v~~~ 160 (458)
T PRK06912 82 QARKSQIVTQLVQGIQYLMKKNKIKVIQGKASFETDHRVRVEYGDK-EEVVDAEQFIIAAGSEPTELPFAPFDGKWIINS 160 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEccCCEEEEeeCCC-cEEEECCEEEEeCCCCCCCCCCCCCCCCeEEcc
Confidence 3333344444444556667778999999999999999988877555 247999999999999986555333344567788
Q ss_pred hhHhcchH-----------------hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEe
Q psy14927 914 TGALSLKK-----------------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASK 976 (1074)
Q Consensus 914 ~~~~~~~~-----------------A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~ 976 (1074)
.+++.+.. |..+.+.|.+||++++.++++ +.+++++.+.+.+.|++.||++++++.+.+++.
T Consensus 161 ~~~~~~~~~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll-~~~d~e~~~~l~~~L~~~GI~i~~~~~V~~i~~ 239 (458)
T PRK06912 161 KHAMSLPSIPSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLL-PGEDEDIAHILREKLENDGVKIFTGAALKGLNS 239 (458)
T ss_pred hHHhCccccCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcC-ccccHHHHHHHHHHHHHCCCEEEECCEEEEEEE
Confidence 77776543 778888999999999999998 788999999999999999999999999999987
Q ss_pred cCCeEEEEEeeccCCCCceEEEcCEEEEccCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEEecccCCCCCcH
Q psy14927 977 SGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGPMLA 1056 (1074)
Q Consensus 977 ~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~~~~~~~ 1056 (1074)
+++.+. +.+ +|+..++++|.||+++|++|+++.++++..|+.++++| |.||+++||+.|||||+|||+++++++
T Consensus 240 ~~~~v~--~~~---~g~~~~i~~D~vivA~G~~p~~~~l~l~~~gv~~~~~g-i~Vd~~~~ts~~~VyA~GD~~~~~~la 313 (458)
T PRK06912 240 YKKQAL--FEY---EGSIQEVNAEFVLVSVGRKPRVQQLNLEKAGVQFSNKG-ISVNEHMQTNVPHIYACGDVIGGIQLA 313 (458)
T ss_pred cCCEEE--EEE---CCceEEEEeCEEEEecCCccCCCCCCchhcCceecCCC-EEeCCCeecCCCCEEEEeecCCCcccH
Confidence 554333 333 24446799999999999999998766778889888777 999999999999999999999988899
Q ss_pred HHHHHHHHHHHHHhhCC
Q psy14927 1057 HKAEDEGIVCVEGIAGD 1073 (1074)
Q Consensus 1057 ~~A~~~G~~aA~~I~~~ 1073 (1074)
+.|..+|++||.+|+|.
T Consensus 314 ~~A~~~g~~aa~~~~g~ 330 (458)
T PRK06912 314 HVAFHEGTTAALHASGE 330 (458)
T ss_pred HHHHHHHHHHHHHHcCC
Confidence 99999999999999874
No 28
>PTZ00058 glutathione reductase; Provisional
Probab=99.97 E-value=1.8e-29 Score=302.20 Aligned_cols=268 Identities=24% Similarity=0.374 Sum_probs=215.9
Q ss_pred chhhhhhccccchHHHHHHHhh-----hhhhhcccccc-----------------------------------ccchhhh
Q psy14927 794 RQVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGV-----------------------------------KLNLETM 833 (1074)
Q Consensus 794 k~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~-----------------------------------~~~~~~~ 833 (1074)
+.+|+||||||||+.||+.+++ .++|+. ..|| .++|..+
T Consensus 48 ~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~-~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~Gi~~~~~~d~~~~ 126 (561)
T PTZ00058 48 VYDLIVIGGGSGGMAAARRAARNKAKVALVEKD-YLGGTCVNVGCVPKKIMFNAASIHDILENSRHYGFDTQFSFNLPLL 126 (561)
T ss_pred cccEEEECcCHHHHHHHHHHHHcCCeEEEEecc-cccccccccCCCCCchhhhhcccHHHHHHHHhcCCCccCccCHHHH
Confidence 4569999999999999999998 566764 2333 1344455
Q ss_pred hhhhhHHHhhhhhhHHHHhhhCCeEEEeeeEEEecCCeEEEE--------------------------eCCCCeeEEEcC
Q psy14927 834 MGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVI--------------------------KSDGSTEEVKTK 887 (1074)
Q Consensus 834 ~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~v~~id~~~~~v~--------------------------~~~G~~~~i~~d 887 (1074)
..+.......+...+...+++.||+++.|++.+++++++.|+ .++| .+++||
T Consensus 127 ~~~~~~~~~~~~~~~~~~l~~~gv~~~~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g--~~i~ad 204 (561)
T PTZ00058 127 VERRDKYIRRLNDIYRQNLKKDNVEYFEGKGSLLSENQVLIKKVSQVDGEADESDDDEVTIVSAGVSQLDDG--QVIEGK 204 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEecCCEEEeeccccccccccccccccceeeeccceecCCC--cEEECC
Confidence 555566666666667788888999999999999988877541 2355 579999
Q ss_pred eEEEccCCCCCCCCCCCCCCcceechhhHhcchH----------------hhHHhhcCCcEEEEecCCccCCCCCCHHHH
Q psy14927 888 NILIATGSEVTPFPGIEVDEETIVSSTGALSLKK----------------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVA 951 (1074)
Q Consensus 888 ~lIIATG~~p~~ipgi~~~~~~v~t~~~~~~~~~----------------A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~ 951 (1074)
+||||||++|. +|.+++. ..++++++++.+.. |..+.++|++||+++++++++ +.+++++.
T Consensus 205 ~lVIATGS~P~-~P~IpG~-~~v~ts~~~~~l~~pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il-~~~d~~i~ 281 (561)
T PTZ00058 205 NILIAVGNKPI-FPDVKGK-EFTISSDDFFKIKEAKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLL-RKFDETII 281 (561)
T ss_pred EEEEecCCCCC-CCCCCCc-eeEEEHHHHhhccCCCEEEEECCcHHHHHHHHHHHHcCCcEEEEEeccccc-ccCCHHHH
Confidence 99999999984 3445443 25778888776532 888899999999999999998 78999999
Q ss_pred HHHHHHHHhCCCEEEeCceEEEEEecCC-eEEEEEeeccCCCCceEEEcCEEEEccCCcccCCccCccccCcccCCCCCe
Q psy14927 952 KQFQRILGKQGMQFKLGTKVTGASKSGD-NITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRV 1030 (1074)
Q Consensus 952 ~~~~~~l~~~gV~i~~~~~v~~i~~~~~-~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I 1030 (1074)
+.+.+.|++.||+++++..+.+++++++ ++.+.+.+ .++++++|.|++++|++|+++++++...++. +++|+|
T Consensus 282 ~~l~~~L~~~GV~i~~~~~V~~I~~~~~~~v~v~~~~-----~~~~i~aD~VlvA~Gr~Pn~~~L~l~~~~~~-~~~G~I 355 (561)
T PTZ00058 282 NELENDMKKNNINIITHANVEEIEKVKEKNLTIYLSD-----GRKYEHFDYVIYCVGRSPNTEDLNLKALNIK-TPKGYI 355 (561)
T ss_pred HHHHHHHHHCCCEEEeCCEEEEEEecCCCcEEEEECC-----CCEEEECCEEEECcCCCCCccccCcccccee-cCCCeE
Confidence 9999999999999999999999987543 34444322 2367999999999999999998776666665 467999
Q ss_pred eeCCCCCCCCCCEEEecccCC----------------------------------CCCcHHHHHHHHHHHHHHhhCC
Q psy14927 1031 PVNSRFQTVIPNIFAIGDCIH----------------------------------GPMLAHKAEDEGIVCVEGIAGD 1073 (1074)
Q Consensus 1031 ~Vd~~~~ts~~~IyAiGD~~~----------------------------------~~~~~~~A~~~G~~aA~~I~~~ 1073 (1074)
.||+++||++|||||+|||++ .+++++.|..+|+++|.||+|.
T Consensus 356 ~VDe~lqTs~p~IYA~GDv~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~la~~A~~~g~~aa~ni~g~ 432 (561)
T PTZ00058 356 KVDDNQRTSVKHIYAVGDCCMVKKNQEIEDLNLLKLYNEEPYLKKKENTSGESYYNVQLTPVAINAGRLLADRLFGP 432 (561)
T ss_pred EECcCCccCCCCEEEeEeccCccccccccccccccccccccccccccccccccccCcCchHHHHHHHHHHHHHHhCC
Confidence 999999999999999999998 5778999999999999999874
No 29
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=99.97 E-value=4.4e-29 Score=298.19 Aligned_cols=271 Identities=41% Similarity=0.613 Sum_probs=215.7
Q ss_pred hhhhhccccchHHHHHHHhh-----hhhhhccccccccchh------------------------------------hhh
Q psy14927 796 VVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLE------------------------------------TMM 834 (1074)
Q Consensus 796 ~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~------------------------------------~~~ 834 (1074)
+|+||||||||+.||+.+++ +++|+ +..||..... .+.
T Consensus 3 DvvVIG~G~aGl~aA~~la~~G~~v~lie~-~~~GG~~~~~gc~Psk~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 81 (461)
T TIGR01350 3 DVVVIGGGPGGYVAAIRAAQLGLKVALVEK-EYLGGTCLNVGCIPTKALLHSAEVYDEIKHAKDYGIEVENVSVDWEKMQ 81 (461)
T ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCCceeecCccchHHHHHHhhHHHHHHHHHhcCCCCCCCcCCHHHHH
Confidence 49999999999999999999 78887 6666642110 000
Q ss_pred hhhhHHHhhhhhhHHHHhhhCCeEEEeeeEEEecCCeEEEEeCCCCeeEEEcCeEEEccCCCCCCCCC-CCCCCcceech
Q psy14927 835 GTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEVKTKNILIATGSEVTPFPG-IEVDEETIVSS 913 (1074)
Q Consensus 835 ~~~~~~~~~l~~~~~~~l~~~gV~~~~g~v~~id~~~~~v~~~~G~~~~i~~d~lIIATG~~p~~ipg-i~~~~~~v~t~ 913 (1074)
.+.......+...+...++..||+++.|+++++++..+.+...+|. .++.||+||||||++|..+|. ++.....++++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~-~~~~~d~lVlAtG~~p~~~~~~~~~~~~~~~~~ 160 (461)
T TIGR01350 82 KRKNKVVKKLVGGVKGLLKKNKVTVIKGEAKFLDPGTVLVTGENGE-ETLTAKNIIIATGSRPRSLPGPFDFDGEVVITS 160 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEecCCCc-EEEEeCEEEEcCCCCCCCCCCCCCCCCceEEcc
Confidence 1111111222223445666789999999999999988888766652 479999999999999854443 33344467788
Q ss_pred hhHhcchH-----------------hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEe
Q psy14927 914 TGALSLKK-----------------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASK 976 (1074)
Q Consensus 914 ~~~~~~~~-----------------A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~ 976 (1074)
++.+.... |..+.+.|.+||++++.+.++ +.+++++...+.+.|++.||++++++.+.+++.
T Consensus 161 ~~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l-~~~~~~~~~~~~~~l~~~gi~i~~~~~v~~i~~ 239 (461)
T TIGR01350 161 TGALNLKEVPESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRIL-PGEDAEVSKVVAKALKKKGVKILTNTKVTAVEK 239 (461)
T ss_pred hHHhccccCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCC-CCCCHHHHHHHHHHHHHcCCEEEeCCEEEEEEE
Confidence 87775433 778889999999999999998 789999999999999999999999999999987
Q ss_pred cCCeEEEEEeeccCCCCceEEEcCEEEEccCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEEecccCCCCCcH
Q psy14927 977 SGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGPMLA 1056 (1074)
Q Consensus 977 ~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~~~~~~~ 1056 (1074)
+++++.+.+.+ |+..++++|.||+|+|++|++..+.++..++.++.+|+|.||++++|+.|+|||+|||+..++++
T Consensus 240 ~~~~v~v~~~~----g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~IyaiGD~~~~~~~~ 315 (461)
T TIGR01350 240 NDDQVVYENKG----GETETLTGEKVLVAVGRKPNTEGLGLENLGVELDERGRIVVDEYMRTNVPGIYAIGDVIGGPMLA 315 (461)
T ss_pred eCCEEEEEEeC----CcEEEEEeCEEEEecCCcccCCCCCcHhhCceECCCCcEeeCCCcccCCCCEEEeeecCCCcccH
Confidence 66666555433 33467999999999999999985447888999999999999999999999999999999988899
Q ss_pred HHHHHHHHHHHHHhhCC
Q psy14927 1057 HKAEDEGIVCVEGIAGD 1073 (1074)
Q Consensus 1057 ~~A~~~G~~aA~~I~~~ 1073 (1074)
..|..+|+.+|.||++.
T Consensus 316 ~~A~~~g~~aa~~i~~~ 332 (461)
T TIGR01350 316 HVASHEGIVAAENIAGK 332 (461)
T ss_pred HHHHHHHHHHHHHHcCC
Confidence 99999999999999874
No 30
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=99.97 E-value=9.6e-29 Score=292.83 Aligned_cols=269 Identities=27% Similarity=0.416 Sum_probs=214.3
Q ss_pred hhhhhhccccchHHHHHHHhh-----hhhhhccc-cccc-c------------------chhhhhhhhhHHHhhhhhhHH
Q psy14927 795 QVVLNTLGNCAAVQANYHLAT-----KLFTQAGD-KGVK-L------------------NLETMMGTKSAAVKALTGGIA 849 (1074)
Q Consensus 795 ~~VviiGgG~AGl~aA~~la~-----~l~e~~~~-~g~~-~------------------~~~~~~~~~~~~~~~l~~~~~ 849 (1074)
.+||||||||||++||..+++ +++|+.+. .||. + +|..+..........+.....
T Consensus 4 ~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~~~GG~c~~~gciP~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (438)
T PRK07251 4 YDLIVIGFGKAGKTLAAKLASAGKKVALVEESKAMYGGTCINIGCIPTKTLLVAAEKNLSFEQVMATKNTVTSRLRGKNY 83 (438)
T ss_pred cCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCcccceeeecCccccchHhhhhhhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 359999999999999999998 78888753 4543 1 223333333333344444455
Q ss_pred HHhhhCCeEEEeeeEEEecCCeEEEEeCCCCeeEEEcCeEEEccCCCCC--CCCCCCCCCcceechhhHhcchH------
Q psy14927 850 HLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEVKTKNILIATGSEVT--PFPGIEVDEETIVSSTGALSLKK------ 921 (1074)
Q Consensus 850 ~~l~~~gV~~~~g~v~~id~~~~~v~~~~G~~~~i~~d~lIIATG~~p~--~ipgi~~~~~~v~t~~~~~~~~~------ 921 (1074)
+.+.+.||+++.+++.++++..+.+...++ ..++.||+||||||++|. ++||+. ....++++.+++.+..
T Consensus 84 ~~~~~~gV~~~~g~~~~~~~~~v~v~~~~~-~~~~~~d~vViATGs~~~~p~i~G~~-~~~~v~~~~~~~~~~~~~~~vv 161 (438)
T PRK07251 84 AMLAGSGVDLYDAEAHFVSNKVIEVQAGDE-KIELTAETIVINTGAVSNVLPIPGLA-DSKHVYDSTGIQSLETLPERLG 161 (438)
T ss_pred HHHHhCCCEEEEEEEEEccCCEEEEeeCCC-cEEEEcCEEEEeCCCCCCCCCCCCcC-CCCcEEchHHHhcchhcCCeEE
Confidence 677888999999999888877766653222 257999999999999984 445542 2345778877766543
Q ss_pred -----------hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEEeeccC
Q psy14927 922 -----------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKD 990 (1074)
Q Consensus 922 -----------A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~ 990 (1074)
|..+++.|.+||++++++.++ +..++++...+.+.|++.||+++++++++++..+++.+.+. .
T Consensus 162 IIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l-~~~~~~~~~~~~~~l~~~GI~i~~~~~V~~i~~~~~~v~v~--~--- 235 (438)
T PRK07251 162 IIGGGNIGLEFAGLYNKLGSKVTVLDAASTIL-PREEPSVAALAKQYMEEDGITFLLNAHTTEVKNDGDQVLVV--T--- 235 (438)
T ss_pred EECCCHHHHHHHHHHHHcCCeEEEEecCCccC-CCCCHHHHHHHHHHHHHcCCEEEcCCEEEEEEecCCEEEEE--E---
Confidence 788889999999999999998 77899999999999999999999999999998765544443 2
Q ss_pred CCCceEEEcCEEEEccCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEEecccCCCCCcHHHHHHHHHHHHHHh
Q psy14927 991 PTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGPMLAHKAEDEGIVCVEGI 1070 (1074)
Q Consensus 991 ~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~~~~~~~~~A~~~G~~aA~~I 1070 (1074)
+ +.++++|.||+|+|++|+++.++++..++.++++|+|.||+++||++|||||+|||++.+.+.+.|..+|+.++.+|
T Consensus 236 ~--g~~i~~D~viva~G~~p~~~~l~l~~~~~~~~~~g~i~vd~~~~t~~~~IyaiGD~~~~~~~~~~a~~~~~~~~~~~ 313 (438)
T PRK07251 236 E--DETYRFDALLYATGRKPNTEPLGLENTDIELTERGAIKVDDYCQTSVPGVFAVGDVNGGPQFTYISLDDFRIVFGYL 313 (438)
T ss_pred C--CeEEEcCEEEEeeCCCCCcccCCchhcCcEECCCCcEEECCCcccCCCCEEEeeecCCCcccHhHHHHHHHHHHHHH
Confidence 1 35799999999999999999876777888888899999999999999999999999999889999999999999999
Q ss_pred hCC
Q psy14927 1071 AGD 1073 (1074)
Q Consensus 1071 ~~~ 1073 (1074)
++.
T Consensus 314 ~~~ 316 (438)
T PRK07251 314 TGD 316 (438)
T ss_pred cCC
Confidence 864
No 31
>PRK07846 mycothione reductase; Reviewed
Probab=99.97 E-value=8.3e-29 Score=292.95 Aligned_cols=265 Identities=22% Similarity=0.367 Sum_probs=205.3
Q ss_pred hhhhhccccchHHHHHHHhh---hhhhhcccccc-----------------------------------ccchhhhhhhh
Q psy14927 796 VVLNTLGNCAAVQANYHLAT---KLFTQAGDKGV-----------------------------------KLNLETMMGTK 837 (1074)
Q Consensus 796 ~VviiGgG~AGl~aA~~la~---~l~e~~~~~g~-----------------------------------~~~~~~~~~~~ 837 (1074)
+|+||||||+|..||..++- .++|+....|. .++|..+..+.
T Consensus 3 D~vVIG~G~~g~~aa~~~~G~~V~lie~~~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 82 (451)
T PRK07846 3 DLIIIGTGSGNSILDERFADKRIAIVEKGTFGGTCLNVGCIPTKMFVYAADVARTIREAARLGVDAELDGVRWPDIVSRV 82 (451)
T ss_pred CEEEECCCHHHHHHHHHHCCCeEEEEeCCCCCCcccCcCcchhHHHHHHHHHHHHHHHHHhCCccCCCCcCCHHHHHHHH
Confidence 48999999999999877533 45554322221 12333334344
Q ss_pred hHHHhhhhhh-HHHH-hhhCCeEEEeeeEEEecCCeEEEEeCCCCeeEEEcCeEEEccCCCCCCCCCCCC-CCcceechh
Q psy14927 838 SAAVKALTGG-IAHL-FKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGIEV-DEETIVSST 914 (1074)
Q Consensus 838 ~~~~~~l~~~-~~~~-l~~~gV~~~~g~v~~id~~~~~v~~~~G~~~~i~~d~lIIATG~~p~~ipgi~~-~~~~v~t~~ 914 (1074)
....+.+... .... ++..||+++.|+++++++..+++ .+| .+++||+||||||++|.. |.+++ ....+++++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~V~v--~~g--~~~~~d~lViATGs~p~~-p~i~g~~~~~~~~~~ 157 (451)
T PRK07846 83 FGRIDPIAAGGEEYRGRDTPNIDVYRGHARFIGPKTLRT--GDG--EEITADQVVIAAGSRPVI-PPVIADSGVRYHTSD 157 (451)
T ss_pred HHHHHHHhccchhhhhhhhCCcEEEEEEEEEecCCEEEE--CCC--CEEEeCEEEEcCCCCCCC-CCCCCcCCccEEchH
Confidence 3333444322 2333 67789999999999987765554 566 479999999999999843 33333 234567777
Q ss_pred hHhcchH-----------------hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEec
Q psy14927 915 GALSLKK-----------------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKS 977 (1074)
Q Consensus 915 ~~~~~~~-----------------A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~ 977 (1074)
+++.+.. |..|.++|.+||+++++++++ +.+++++.+.+.+.+ +.||++++++++.+++++
T Consensus 158 ~~~~l~~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll-~~~d~~~~~~l~~l~-~~~v~i~~~~~v~~i~~~ 235 (451)
T PRK07846 158 TIMRLPELPESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLL-RHLDDDISERFTELA-SKRWDVRLGRNVVGVSQD 235 (451)
T ss_pred HHhhhhhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccc-cccCHHHHHHHHHHH-hcCeEEEeCCEEEEEEEc
Confidence 7765543 888899999999999999998 789999988877655 568999999999999876
Q ss_pred CCeEEEEEeeccCCCCceEEEcCEEEEccCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEEecccCCCCCcHH
Q psy14927 978 GDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGPMLAH 1057 (1074)
Q Consensus 978 ~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~~~~~~~~ 1057 (1074)
++++.+++.+ +.++++|.|++|+|++|++++++++..|++++++|+|.||+++||++|||||+|||++.+++++
T Consensus 236 ~~~v~v~~~~------g~~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~Vd~~~~Ts~p~IyA~GD~~~~~~l~~ 309 (451)
T PRK07846 236 GSGVTLRLDD------GSTVEADVLLVATGRVPNGDLLDAAAAGVDVDEDGRVVVDEYQRTSAEGVFALGDVSSPYQLKH 309 (451)
T ss_pred CCEEEEEECC------CcEeecCEEEEEECCccCccccCchhcCceECCCCcEeECCCcccCCCCEEEEeecCCCccChh
Confidence 5555565543 4579999999999999999987778899999999999999999999999999999999888999
Q ss_pred HHHHHHHHHHHHhhCC
Q psy14927 1058 KAEDEGIVCVEGIAGD 1073 (1074)
Q Consensus 1058 ~A~~~G~~aA~~I~~~ 1073 (1074)
.|..||+++|+||++.
T Consensus 310 ~A~~~g~~~a~ni~~~ 325 (451)
T PRK07846 310 VANHEARVVQHNLLHP 325 (451)
T ss_pred HHHHHHHHHHHHHcCC
Confidence 9999999999999864
No 32
>PRK14694 putative mercuric reductase; Provisional
Probab=99.97 E-value=1.4e-28 Score=293.44 Aligned_cols=267 Identities=25% Similarity=0.434 Sum_probs=205.6
Q ss_pred chhhhhhccccchHHHHHHHhh-----hhhhhcccccccc-------------------------------------chh
Q psy14927 794 RQVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKL-------------------------------------NLE 831 (1074)
Q Consensus 794 k~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~-------------------------------------~~~ 831 (1074)
+.+|+||||||||++||..+++ .++|+. ..||.. +|.
T Consensus 6 ~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~-~~GGtc~n~GciPsk~l~~~a~~~~~~~~~~~~~g~~~~~~~~~~~ 84 (468)
T PRK14694 6 NLHIAVIGSGGSAMAAALKATERGARVTLIERG-TIGGTCVNIGCVPSKIMIRAAHIAHLRRESPFDDGLSAQAPVVDRS 84 (468)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEEcc-ccccceecCCccccHHHHHHHHHHHHHhhccccCCcccCCCccCHH
Confidence 4569999999999999999999 677764 333311 111
Q ss_pred hhhhhhhHHHhhhhhh-HHHHhhh-CCeEEEeeeEEEecCCeEEEEeCCCCeeEEEcCeEEEccCCCCC--CCCCCCCCC
Q psy14927 832 TMMGTKSAAVKALTGG-IAHLFKS-NKVTQLNGHGKITGPNTVTVIKSDGSTEEVKTKNILIATGSEVT--PFPGIEVDE 907 (1074)
Q Consensus 832 ~~~~~~~~~~~~l~~~-~~~~l~~-~gV~~~~g~v~~id~~~~~v~~~~G~~~~i~~d~lIIATG~~p~--~ipgi~~~~ 907 (1074)
.+..+.+.....+... +...+.. .+|+++.|+++++|++.+.|++.+|+..+++||+||||||++|. ++||+. .
T Consensus 85 ~l~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~g~v~~id~~~~~V~~~~g~~~~~~~d~lViATGs~p~~p~i~G~~--~ 162 (468)
T PRK14694 85 ALLAQQQARVEELRESKYQSILRENAAITVLNGEARFVDERTLTVTLNDGGEQTVHFDRAFIGTGARPAEPPVPGLA--E 162 (468)
T ss_pred HHHHHHHHHHHHHhcccHHHHHhcCCCeEEEEEEEEEecCCEEEEEecCCCeEEEECCEEEEeCCCCCCCCCCCCCC--C
Confidence 2222222222222211 3333544 38999999999999999999988875557999999999999984 344442 2
Q ss_pred cceechhhHhcchH-----------------hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCce
Q psy14927 908 ETIVSSTGALSLKK-----------------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTK 970 (1074)
Q Consensus 908 ~~v~t~~~~~~~~~-----------------A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~ 970 (1074)
..++++.+.+.+.. |..|.++|.+||++++ ++++ +.+++++...+.+.|++.||++++++.
T Consensus 163 ~~~~~~~~~~~l~~~~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~-~~~l-~~~~~~~~~~l~~~l~~~GI~v~~~~~ 240 (468)
T PRK14694 163 TPYLTSTSALELDHIPERLLVIGASVVALELAQAFARLGSRVTVLAR-SRVL-SQEDPAVGEAIEAAFRREGIEVLKQTQ 240 (468)
T ss_pred CceEcchhhhchhcCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEC-CCCC-CCCCHHHHHHHHHHHHhCCCEEEeCCE
Confidence 23556555554432 8888999999999986 4666 678999999999999999999999999
Q ss_pred EEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEEecccC
Q psy14927 971 VTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCI 1050 (1074)
Q Consensus 971 v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~ 1050 (1074)
+.+++.+++.+.+... + .++++|.||+++|++|+++++.+..+|++. ++|+|.||++++|++|||||+|||+
T Consensus 241 v~~i~~~~~~~~v~~~-----~--~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~-~~G~i~vd~~~~Ts~~~IyA~GD~~ 312 (468)
T PRK14694 241 ASEVDYNGREFILETN-----A--GTLRAEQLLVATGRTPNTENLNLESIGVET-ERGAIRIDEHLQTTVSGIYAAGDCT 312 (468)
T ss_pred EEEEEEcCCEEEEEEC-----C--CEEEeCEEEEccCCCCCcCCCCchhcCccc-CCCeEeeCCCcccCCCCEEEEeecC
Confidence 9999876554444322 1 259999999999999999987667788886 5799999999999999999999999
Q ss_pred CCCCcHHHHHHHHHHHHHHhhCC
Q psy14927 1051 HGPMLAHKAEDEGIVCVEGIAGD 1073 (1074)
Q Consensus 1051 ~~~~~~~~A~~~G~~aA~~I~~~ 1073 (1074)
+.|.+++.|..+|+.||.||++.
T Consensus 313 ~~~~~~~~A~~~G~~aa~~i~~~ 335 (468)
T PRK14694 313 DQPQFVYVAAAGGSRAAINMTGG 335 (468)
T ss_pred CCcccHHHHHHHHHHHHHHhcCC
Confidence 99989999999999999999874
No 33
>PRK13748 putative mercuric reductase; Provisional
Probab=99.96 E-value=1e-28 Score=302.14 Aligned_cols=268 Identities=25% Similarity=0.388 Sum_probs=206.3
Q ss_pred chhhhhhccccchHHHHHHHhh-----hhhhhcccccccc-c------------------------------------hh
Q psy14927 794 RQVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKL-N------------------------------------LE 831 (1074)
Q Consensus 794 k~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~-~------------------------------------~~ 831 (1074)
+.+||||||||+|+.||+.+++ .++|+. ..||.. + +.
T Consensus 98 ~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~-~~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 176 (561)
T PRK13748 98 PLHVAVIGSGGAAMAAALKAVEQGARVTLIERG-TIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAATVPTIDRS 176 (561)
T ss_pred CCCEEEECcCHHHHHHHHHHHhCCCeEEEEecC-cceeeccccCccccHHHHHHHHHHHHHhcccccCCccCCCCccCHH
Confidence 4569999999999999999999 677765 444421 1 11
Q ss_pred hhhhhhhHHHhhhhh-hHHHHhhhC-CeEEEeeeEEEecCCeEEEEeCCCCeeEEEcCeEEEccCCCCC--CCCCCCCCC
Q psy14927 832 TMMGTKSAAVKALTG-GIAHLFKSN-KVTQLNGHGKITGPNTVTVIKSDGSTEEVKTKNILIATGSEVT--PFPGIEVDE 907 (1074)
Q Consensus 832 ~~~~~~~~~~~~l~~-~~~~~l~~~-gV~~~~g~v~~id~~~~~v~~~~G~~~~i~~d~lIIATG~~p~--~ipgi~~~~ 907 (1074)
.+..+.......+.. .+...+... +|+++.|+++++++..+.|.+.+|+..+++||+||||||++|. ++||+. .
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lviAtGs~p~~p~i~g~~--~ 254 (561)
T PRK13748 177 RLLAQQQARVDELRHAKYEGILDGNPAITVLHGEARFKDDQTLIVRLNDGGERVVAFDRCLIATGASPAVPPIPGLK--E 254 (561)
T ss_pred HHHHHHHHHHHHHhcccHHHHHhccCCeEEEEEEEEEecCCEEEEEeCCCceEEEEcCEEEEcCCCCCCCCCCCCCC--c
Confidence 111111111111111 133445555 8999999999999999988887774457999999999999984 344432 2
Q ss_pred cceechhhHhcchH-----------------hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCce
Q psy14927 908 ETIVSSTGALSLKK-----------------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTK 970 (1074)
Q Consensus 908 ~~v~t~~~~~~~~~-----------------A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~ 970 (1074)
..+++..+.+.... |..|.++|.+||++++. .++ +.+++++...+.+.|++.||++++++.
T Consensus 255 ~~~~~~~~~~~~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~-~~l-~~~d~~~~~~l~~~l~~~gI~i~~~~~ 332 (561)
T PRK13748 255 TPYWTSTEALVSDTIPERLAVIGSSVVALELAQAFARLGSKVTILARS-TLF-FREDPAIGEAVTAAFRAEGIEVLEHTQ 332 (561)
T ss_pred cceEccHHHhhcccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEecC-ccc-cccCHHHHHHHHHHHHHCCCEEEcCCE
Confidence 23455555443221 88889999999999985 455 568999999999999999999999999
Q ss_pred EEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEEecccC
Q psy14927 971 VTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCI 1050 (1074)
Q Consensus 971 v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~ 1050 (1074)
+++++.+++.+.+...+ .++++|.||+++|++||+.++.++..|++++++|+|.||+++||++|||||+|||+
T Consensus 333 v~~i~~~~~~~~v~~~~-------~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd~~~~Ts~~~IyA~GD~~ 405 (561)
T PRK13748 333 ASQVAHVDGEFVLTTGH-------GELRADKLLVATGRAPNTRSLALDAAGVTVNAQGAIVIDQGMRTSVPHIYAAGDCT 405 (561)
T ss_pred EEEEEecCCEEEEEecC-------CeEEeCEEEEccCCCcCCCCcCchhcCceECCCCCEeECCCcccCCCCEEEeeecC
Confidence 99998765554443322 25999999999999999998767889999999999999999999999999999999
Q ss_pred CCCCcHHHHHHHHHHHHHHhhCC
Q psy14927 1051 HGPMLAHKAEDEGIVCVEGIAGD 1073 (1074)
Q Consensus 1051 ~~~~~~~~A~~~G~~aA~~I~~~ 1073 (1074)
+.+.+++.|..+|++||.||++.
T Consensus 406 ~~~~~~~~A~~~g~~aa~~i~g~ 428 (561)
T PRK13748 406 DQPQFVYVAAAAGTRAAINMTGG 428 (561)
T ss_pred CCccchhHHHHHHHHHHHHHcCC
Confidence 99889999999999999999874
No 34
>PRK14727 putative mercuric reductase; Provisional
Probab=99.96 E-value=1.3e-28 Score=294.01 Aligned_cols=269 Identities=26% Similarity=0.363 Sum_probs=206.9
Q ss_pred chhhhhhccccchHHHHHHHhh-----hhhhhccccccccchh------------------------------------h
Q psy14927 794 RQVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLE------------------------------------T 832 (1074)
Q Consensus 794 k~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~------------------------------------~ 832 (1074)
+.+|+||||||+|+.+|..+++ +++|+.+..||..... .
T Consensus 16 ~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG~c~n~GciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~ 95 (479)
T PRK14727 16 QLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGGCCVNVGCVPSKILIRAAQLAHQQRSNPFDGVEAVAPSIDRGL 95 (479)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcceeEeccccccccHHHHHHHHHHHHHhhccccCcccCCCccCHHH
Confidence 3459999999999999999999 6777765555532111 0
Q ss_pred hhhhhhHHHhhhhh-hHHHHhhhC-CeEEEeeeEEEecCCeEEEEeCCCCeeEEEcCeEEEccCCCCC--CCCCCCCCCc
Q psy14927 833 MMGTKSAAVKALTG-GIAHLFKSN-KVTQLNGHGKITGPNTVTVIKSDGSTEEVKTKNILIATGSEVT--PFPGIEVDEE 908 (1074)
Q Consensus 833 ~~~~~~~~~~~l~~-~~~~~l~~~-gV~~~~g~v~~id~~~~~v~~~~G~~~~i~~d~lIIATG~~p~--~ipgi~~~~~ 908 (1074)
+..+.......+.. .+...+... ||+++.|++++++++.+.|.+.+|+..++.||+||||||++|. ++||+. ..
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~G~a~f~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~p~i~G~~--~~ 173 (479)
T PRK14727 96 LLHQQQARVEELRHAKYQSILDGNPALTLLKGYARFKDGNTLVVRLHDGGERVLAADRCLIATGSTPTIPPIPGLM--DT 173 (479)
T ss_pred HHHHHHHHHHHHhhhhHHHHHhhcCCeEEEEEEEEEecCCEEEEEeCCCceEEEEeCEEEEecCCCCCCCCCCCcC--cc
Confidence 11111111111211 133444444 8999999999999999999888875457999999999999984 334432 22
Q ss_pred ceechhhHhcchH-----------------hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceE
Q psy14927 909 TIVSSTGALSLKK-----------------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKV 971 (1074)
Q Consensus 909 ~v~t~~~~~~~~~-----------------A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v 971 (1074)
.+++..+.+.... |..+.++|.+||++++. .++ +.+++++...+.+.|++.||++++++++
T Consensus 174 ~~~~~~~~l~~~~~~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~-~~l-~~~d~~~~~~l~~~L~~~GV~i~~~~~V 251 (479)
T PRK14727 174 PYWTSTEALFSDELPASLTVIGSSVVAAEIAQAYARLGSRVTILARS-TLL-FREDPLLGETLTACFEKEGIEVLNNTQA 251 (479)
T ss_pred ceecchHHhccccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEEcC-CCC-CcchHHHHHHHHHHHHhCCCEEEcCcEE
Confidence 3455544443221 78888999999999875 566 6789999999999999999999999999
Q ss_pred EEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEEecccCC
Q psy14927 972 TGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIH 1051 (1074)
Q Consensus 972 ~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~~ 1051 (1074)
+++..+++.+.+...+ .++++|.||+++|++||+.++.++..|++++++|+|.||+++||++|||||+|||+.
T Consensus 252 ~~i~~~~~~~~v~~~~-------g~i~aD~VlvA~G~~pn~~~l~l~~~g~~~~~~G~i~Vd~~~~Ts~~~IyA~GD~~~ 324 (479)
T PRK14727 252 SLVEHDDNGFVLTTGH-------GELRAEKLLISTGRHANTHDLNLEAVGVTTDTSGAIVVNPAMETSAPDIYAAGDCSD 324 (479)
T ss_pred EEEEEeCCEEEEEEcC-------CeEEeCEEEEccCCCCCccCCCchhhCceecCCCCEEECCCeecCCCCEEEeeecCC
Confidence 9998765555444322 258999999999999999987678889999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHHhhCC
Q psy14927 1052 GPMLAHKAEDEGIVCVEGIAGD 1073 (1074)
Q Consensus 1052 ~~~~~~~A~~~G~~aA~~I~~~ 1073 (1074)
.|.+++.|..+|+.||.||++.
T Consensus 325 ~~~~~~~A~~~G~~aa~~i~g~ 346 (479)
T PRK14727 325 LPQFVYVAAAAGSRAGINMTGG 346 (479)
T ss_pred cchhhhHHHHHHHHHHHHHcCC
Confidence 8889999999999999999874
No 35
>PTZ00052 thioredoxin reductase; Provisional
Probab=99.96 E-value=1.7e-28 Score=293.37 Aligned_cols=268 Identities=25% Similarity=0.328 Sum_probs=206.3
Q ss_pred hhhhhccccchHHHHHHHhh-----hhhhhcc--------ccccc-cc--------------------------------
Q psy14927 796 VVLNTLGNCAAVQANYHLAT-----KLFTQAG--------DKGVK-LN-------------------------------- 829 (1074)
Q Consensus 796 ~VviiGgG~AGl~aA~~la~-----~l~e~~~--------~~g~~-~~-------------------------------- 829 (1074)
+|+||||||||+.||+.+++ .++|+.. ..||. ++
T Consensus 7 DviVIG~GpaG~~AA~~aa~~G~~V~lie~~~~~~~~~~~~~GG~C~n~gciPsK~l~~~a~~~~~~~~~~~~~g~~~~~ 86 (499)
T PTZ00052 7 DLVVIGGGSGGMAAAKEAAAHGKKVALFDYVKPSTQGTKWGLGGTCVNVGCVPKKLMHYAANIGSIFHHDSQMYGWKTSS 86 (499)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEeccCCCCccccccccceeccccccchHHHHHHHHHHHHHHhHHhcCCCCCCC
Confidence 49999999999999999998 6778521 24443 11
Q ss_pred ---hhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEeeeEEEecCCeEEEEeCCCCeeEEEcCeEEEccCCCCCCCCCCCCC
Q psy14927 830 ---LETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGIEVD 906 (1074)
Q Consensus 830 ---~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~v~~id~~~~~v~~~~G~~~~i~~d~lIIATG~~p~~ipgi~~~ 906 (1074)
+..+..+.......+...+...++..||+++.|++.+.++..+.+... +....+.||+||||||++|..++.+++.
T Consensus 87 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~a~~~~~~~v~v~~~-~~~~~i~~d~lIIATGs~p~~p~~i~G~ 165 (499)
T PTZ00052 87 SFNWGKLVTTVQNHIRSLNFSYRTGLRSSKVEYINGLAKLKDEHTVSYGDN-SQEETITAKYILIATGGRPSIPEDVPGA 165 (499)
T ss_pred CcCHHHHHHHHHHHHHHhhHHHHHHhhhcCcEEEEEEEEEccCCEEEEeeC-CCceEEECCEEEEecCCCCCCCCCCCCc
Confidence 111122222222233333444455679999999999988887776532 2235799999999999998533335544
Q ss_pred CcceechhhHhcchH-----------------hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCc
Q psy14927 907 EETIVSSTGALSLKK-----------------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGT 969 (1074)
Q Consensus 907 ~~~v~t~~~~~~~~~-----------------A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~ 969 (1074)
....+++++++.+.. |..|.++|.+||++++. .++ +.+++++.+.+.+.|++.||++++++
T Consensus 166 ~~~~~~~~~~~~~~~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~-~~l-~~~d~~~~~~l~~~l~~~GV~i~~~~ 243 (499)
T PTZ00052 166 KEYSITSDDIFSLSKDPGKTLIVGASYIGLETAGFLNELGFDVTVAVRS-IPL-RGFDRQCSEKVVEYMKEQGTLFLEGV 243 (499)
T ss_pred cceeecHHHHhhhhcCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcC-ccc-ccCCHHHHHHHHHHHHHcCCEEEcCC
Confidence 445678888776543 88889999999999874 566 78999999999999999999999999
Q ss_pred eEEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEEeccc
Q psy14927 970 KVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDC 1049 (1074)
Q Consensus 970 ~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~ 1049 (1074)
.+.++...++.+.+.+.+ +.++++|.||+++|++||++++.++.+|++++++|++.+++. +|+.|+|||+|||
T Consensus 244 ~v~~v~~~~~~~~v~~~~------g~~i~~D~vl~a~G~~pn~~~l~l~~~g~~~~~~G~ii~~~~-~Ts~p~IyAiGDv 316 (499)
T PTZ00052 244 VPINIEKMDDKIKVLFSD------GTTELFDTVLYATGRKPDIKGLNLNAIGVHVNKSNKIIAPND-CTNIPNIFAVGDV 316 (499)
T ss_pred eEEEEEEcCCeEEEEECC------CCEEEcCEEEEeeCCCCCccccCchhcCcEECCCCCEeeCCC-cCCCCCEEEEEEe
Confidence 999998755555565543 346899999999999999998777889999999999877766 9999999999999
Q ss_pred CC-CCCcHHHHHHHHHHHHHHhhCC
Q psy14927 1050 IH-GPMLAHKAEDEGIVCVEGIAGD 1073 (1074)
Q Consensus 1050 ~~-~~~~~~~A~~~G~~aA~~I~~~ 1073 (1074)
+. .|.+++.|..+|+++|.||++.
T Consensus 317 ~~~~~~l~~~A~~~g~~aa~ni~g~ 341 (499)
T PTZ00052 317 VEGRPELTPVAIKAGILLARRLFKQ 341 (499)
T ss_pred cCCCcccHHHHHHHHHHHHHHHhCC
Confidence 85 5779999999999999999874
No 36
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=99.96 E-value=2.4e-28 Score=291.67 Aligned_cols=264 Identities=39% Similarity=0.551 Sum_probs=206.8
Q ss_pred hhhhhccccchHHHHHHHhh-----hhhhhccccccccc------------------------------------hhhhh
Q psy14927 796 VVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLN------------------------------------LETMM 834 (1074)
Q Consensus 796 ~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~------------------------------------~~~~~ 834 (1074)
+||||||||+|+.||..+++ .++|+ +..|+... +..+.
T Consensus 5 DvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~GG~~~~~gc~psk~l~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~ 83 (460)
T PRK06292 5 DVIVIGAGPAGYVAARRAAKLGKKVALIEK-GPLGGTCLNVGCIPSKALIAAAEAFHEAKHAEEFGIHADGPKIDFKKVM 83 (460)
T ss_pred cEEEECCCHHHHHHHHHHHHCCCeEEEEeC-CccccceeccceeeHHHHHHHHHHHHHHHHHHhcCCCcCCCccCHHHHH
Confidence 59999999999999999998 67787 45555321 11111
Q ss_pred hhhhHHHhhhhhhH-HHHhhhCCeEEEeeeEEEecCCeEEEEeCCCCeeEEEcCeEEEccCCC-CCCCCCCCC-CCccee
Q psy14927 835 GTKSAAVKALTGGI-AHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEVKTKNILIATGSE-VTPFPGIEV-DEETIV 911 (1074)
Q Consensus 835 ~~~~~~~~~l~~~~-~~~l~~~gV~~~~g~v~~id~~~~~v~~~~G~~~~i~~d~lIIATG~~-p~~ipgi~~-~~~~v~ 911 (1074)
.........+...+ ...+...||+++.|++..+++..+.+ ++ .++.||+||||||++ | ++||... ....++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~v~v---~~--~~~~~d~lIiATGs~~p-~ipg~~~~~~~~~~ 157 (460)
T PRK06292 84 ARVRRERDRFVGGVVEGLEKKPKIDKIKGTARFVDPNTVEV---NG--ERIEAKNIVIATGSRVP-PIPGVWLILGDRLL 157 (460)
T ss_pred HHHHHHHHHHhcchHHHHHhhCCCEEEEEEEEEccCCEEEE---Cc--EEEEeCEEEEeCCCCCC-CCCCCcccCCCcEE
Confidence 11111111111222 33456679999999988888877665 45 679999999999999 5 4666532 234567
Q ss_pred chhhHhcchH-----------------hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEE
Q psy14927 912 SSTGALSLKK-----------------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGA 974 (1074)
Q Consensus 912 t~~~~~~~~~-----------------A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i 974 (1074)
++++.+.+.. |..|.++|.+||++++.++++ +.+++++...+.+.|++. |++++++.+.++
T Consensus 158 ~~~~~~~~~~~~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l-~~~d~~~~~~~~~~l~~~-I~i~~~~~v~~i 235 (460)
T PRK06292 158 TSDDAFELDKLPKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRIL-PLEDPEVSKQAQKILSKE-FKIKLGAKVTSV 235 (460)
T ss_pred CchHHhCccccCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcC-cchhHHHHHHHHHHHhhc-cEEEcCCEEEEE
Confidence 7777664332 788889999999999999998 789999999999999999 999999999999
Q ss_pred EecCC-eEEEEEeeccCCCCceEEEcCEEEEccCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEEecccCCCC
Q psy14927 975 SKSGD-NITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGP 1053 (1074)
Q Consensus 975 ~~~~~-~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~~~~ 1053 (1074)
+.+++ .+.++..+ +++.++++|.||+++|++|+++.+.++..|++++++|+|.||++++|++|||||+|||++.+
T Consensus 236 ~~~~~~~v~~~~~~----~~~~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~g~i~vd~~~~ts~~~IyA~GD~~~~~ 311 (460)
T PRK06292 236 EKSGDEKVEELEKG----GKTETIEADYVLVATGRRPNTDGLGLENTGIELDERGRPVVDEHTQTSVPGIYAAGDVNGKP 311 (460)
T ss_pred EEcCCceEEEEEcC----CceEEEEeCEEEEccCCccCCCCCCcHhhCCEecCCCcEeECCCcccCCCCEEEEEecCCCc
Confidence 87544 34443222 44578999999999999999998767889999999999999999999999999999999988
Q ss_pred CcHHHHHHHHHHHHHHhhC
Q psy14927 1054 MLAHKAEDEGIVCVEGIAG 1072 (1074)
Q Consensus 1054 ~~~~~A~~~G~~aA~~I~~ 1072 (1074)
++++.|..||+.||.||++
T Consensus 312 ~~~~~A~~qg~~aa~~i~~ 330 (460)
T PRK06292 312 PLLHEAADEGRIAAENAAG 330 (460)
T ss_pred cchhHHHHHHHHHHHHhcC
Confidence 8999999999999999987
No 37
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=99.96 E-value=3.6e-29 Score=281.70 Aligned_cols=263 Identities=24% Similarity=0.306 Sum_probs=211.8
Q ss_pred chhhhhhccccchHHHHHHHhh-------hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCC-eEEEeeeEE
Q psy14927 794 RQVVLNTLGNCAAVQANYHLAT-------KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNK-VTQLNGHGK 865 (1074)
Q Consensus 794 k~~VviiGgG~AGl~aA~~la~-------~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~g-V~~~~g~v~ 865 (1074)
+++|||||||++|+.+|..|.+ +++++...+...+.+..+..+.-.. ..+...+...++..+ |+|+.++|+
T Consensus 3 ~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl~~plL~eva~g~l~~-~~i~~p~~~~~~~~~~v~~~~~~V~ 81 (405)
T COG1252 3 KKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLFTPLLYEVATGTLSE-SEIAIPLRALLRKSGNVQFVQGEVT 81 (405)
T ss_pred CceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccccchhhhhhhcCCCCh-hheeccHHHHhcccCceEEEEEEEE
Confidence 4569999999999999999998 4667777777777777777665433 677788899998665 999999999
Q ss_pred EecCCeEEEEeCCCCeeEEEcCeEEEccCCCCC--CCCCCCCCCcceechhhHhcchH----------------------
Q psy14927 866 ITGPNTVTVIKSDGSTEEVKTKNILIATGSEVT--PFPGIEVDEETIVSSTGALSLKK---------------------- 921 (1074)
Q Consensus 866 ~id~~~~~v~~~~G~~~~i~~d~lIIATG~~p~--~ipgi~~~~~~v~t~~~~~~~~~---------------------- 921 (1074)
.||.+..+|++.++ .++.||+||||+|+.+. .+||+.......-+.++...++.
T Consensus 82 ~ID~~~k~V~~~~~--~~i~YD~LVvalGs~~~~fgi~G~~E~a~~lks~edA~~ir~~l~~~fe~a~~~~~~~~~lti~ 159 (405)
T COG1252 82 DIDRDAKKVTLADL--GEISYDYLVVALGSETNYFGIPGAAEYAFGLKTLEDALRLRRHLLEAFEKASQEEDDRALLTIV 159 (405)
T ss_pred EEcccCCEEEeCCC--ccccccEEEEecCCcCCcCCCCCHHHhCCCCCCHHHHHHHHHHHHHHHHHhhccccccceeEEE
Confidence 99999999999985 58999999999999973 34554333333335555543222
Q ss_pred -----------hhHHhhc-------------CCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEec
Q psy14927 922 -----------GSVWGRL-------------GAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKS 977 (1074)
Q Consensus 922 -----------A~~l~~~-------------G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~ 977 (1074)
|..|.++ ..+|+||+++++++ |.++++++.+..+.|++.||++++++.|++++++
T Consensus 160 IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~IL-p~~~~~l~~~a~~~L~~~GV~v~l~~~Vt~v~~~ 238 (405)
T COG1252 160 IVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRIL-PMFPPKLSKYAERALEKLGVEVLLGTPVTEVTPD 238 (405)
T ss_pred EECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhc-cCCCHHHHHHHHHHHHHCCCEEEcCCceEEECCC
Confidence 2222211 13899999999999 8999999999999999999999999999999985
Q ss_pred CCeEEEEEeeccCCCCceEEEcCEEEEccCCcccCCccCccc-cCcccCCCCCeeeCCCCCC-CCCCEEEecccCCC---
Q psy14927 978 GDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEE-IGIEKDEKGRVPVNSRFQT-VIPNIFAIGDCIHG--- 1052 (1074)
Q Consensus 978 ~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~-~gl~ld~~G~I~Vd~~~~t-s~~~IyAiGD~~~~--- 1052 (1074)
+ |++.+ |++ +|++|++||++|.+|++. ... .|++.|..|++.||+++++ ++|+|||+|||+..
T Consensus 239 ~----v~~~~----g~~-~I~~~tvvWaaGv~a~~~---~~~l~~~e~dr~Grl~V~~~L~~~~~~~IFa~GD~A~~~~~ 306 (405)
T COG1252 239 G----VTLKD----GEE-EIPADTVVWAAGVRASPL---LKDLSGLETDRRGRLVVNPTLQVPGHPDIFAAGDCAAVIDP 306 (405)
T ss_pred c----EEEcc----CCe-eEecCEEEEcCCCcCChh---hhhcChhhhccCCCEEeCCCcccCCCCCeEEEeccccCCCC
Confidence 3 55554 222 799999999999999886 355 4788899999999999995 99999999999862
Q ss_pred ---CCcHHHHHHHHHHHHHHhhC
Q psy14927 1053 ---PMLAHKAEDEGIVCVEGIAG 1072 (1074)
Q Consensus 1053 ---~~~~~~A~~~G~~aA~~I~~ 1072 (1074)
|+.++.|++||..+|+||..
T Consensus 307 ~p~P~tAQ~A~Qqg~~~a~ni~~ 329 (405)
T COG1252 307 RPVPPTAQAAHQQGEYAAKNIKA 329 (405)
T ss_pred CCCCChhHHHHHHHHHHHHHHHH
Confidence 57899999999999999873
No 38
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=99.96 E-value=3.7e-28 Score=294.20 Aligned_cols=274 Identities=29% Similarity=0.419 Sum_probs=214.7
Q ss_pred chhhhhhccccchHHHHHHHhh-----hhhhhc-ccccc-----------------------------------------
Q psy14927 794 RQVVLNTLGNCAAVQANYHLAT-----KLFTQA-GDKGV----------------------------------------- 826 (1074)
Q Consensus 794 k~~VviiGgG~AGl~aA~~la~-----~l~e~~-~~~g~----------------------------------------- 826 (1074)
+.+|+|||+||+|..||+.+++ .++|.. ...||
T Consensus 116 ~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~~~~lGGtCvn~GCiPsK~l~~~a~~~~~~~~~~~~~~~Gi~~~~~~~ 195 (659)
T PTZ00153 116 EYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDSIGGTCVNVGCIPSKALLYATGKYRELKNLAKLYTYGIYTNAFKN 195 (659)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCccccceeEeCCcchHHHHHHHHHHHHHHhccccccCCeeeccccc
Confidence 3469999999999999999998 566642 12222
Q ss_pred ----------------ccchhhhhhhhhHHHhhhhhhHHHHhhhCC-------eEEEeeeEEEecCCeEEEEeCCCCeeE
Q psy14927 827 ----------------KLNLETMMGTKSAAVKALTGGIAHLFKSNK-------VTQLNGHGKITGPNTVTVIKSDGSTEE 883 (1074)
Q Consensus 827 ----------------~~~~~~~~~~~~~~~~~l~~~~~~~l~~~g-------V~~~~g~v~~id~~~~~v~~~~G~~~~ 883 (1074)
.++|..+..+.+...+.+...+...++..+ |+++.|...+++++.+++. .+| .+
T Consensus 196 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~G~a~f~~~~~v~v~-~~g--~~ 272 (659)
T PTZ00153 196 GKNDPVERNQLVADTVQIDITKLKEYTQSVIDKLRGGIENGLKSKKFCKNSEHVQVIYERGHIVDKNTIKSE-KSG--KE 272 (659)
T ss_pred cccccccccccccccCccCHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCceEEEEeEEEEecCCeEEEc-cCC--EE
Confidence 123444444455555555555666777664 8999999999999887764 355 57
Q ss_pred EEcCeEEEccCCCCCCCCCCCCCCcceechhhHhcchH-----------------hhHHhhcCCcEEEEecCCccCCCCC
Q psy14927 884 VKTKNILIATGSEVTPFPGIEVDEETIVSSTGALSLKK-----------------GSVWGRLGAEVTAIEFMNAIGGMGI 946 (1074)
Q Consensus 884 i~~d~lIIATG~~p~~ipgi~~~~~~v~t~~~~~~~~~-----------------A~~l~~~G~~Vtlv~~~~~~~~~~~ 946 (1074)
+.||+||||||++|..+|+.+.+...++++++++.+.. |..|.++|++||++++.++++ +.+
T Consensus 273 i~ad~lIIATGS~P~~P~~~~~~~~~V~ts~d~~~l~~lpk~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll-~~~ 351 (659)
T PTZ00153 273 FKVKNIIIATGSTPNIPDNIEVDQKSVFTSDTAVKLEGLQNYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLL-PLL 351 (659)
T ss_pred EECCEEEEcCCCCCCCCCCCCCCCCcEEehHHhhhhhhcCCceEEECCCHHHHHHHHHHHhCCCeEEEEeccCccc-ccC
Confidence 99999999999998544434334556888888765543 788889999999999999999 789
Q ss_pred CHHHHHHHHHHH-HhCCCEEEeCceEEEEEecCCe--EEEEEeeccCCC----------CceEEEcCEEEEccCCcccCC
Q psy14927 947 DGEVAKQFQRIL-GKQGMQFKLGTKVTGASKSGDN--ITVTIENVKDPT----------KKEELSCDALLVCVGRRPYTH 1013 (1074)
Q Consensus 947 ~~~~~~~~~~~l-~~~gV~i~~~~~v~~i~~~~~~--~~v~~~~~~~~g----------~~~~i~~D~vi~a~G~~p~~~ 1013 (1074)
++++...+.+.+ ++.||++++++.|.+|++++++ +.+.+.+.. ++ +.+++++|.||+|+|++||++
T Consensus 352 d~eis~~l~~~ll~~~GV~I~~~~~V~~I~~~~~~~~v~v~~~~~~-~~~~~~~~~~~~~~~~i~aD~VlvAtGr~Pnt~ 430 (659)
T PTZ00153 352 DADVAKYFERVFLKSKPVRVHLNTLIEYVRAGKGNQPVIIGHSERQ-TGESDGPKKNMNDIKETYVDSCLVATGRKPNTN 430 (659)
T ss_pred CHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEEEeccc-cccccccccccccceEEEcCEEEEEECcccCCc
Confidence 999999998875 6799999999999999875443 445443210 01 124799999999999999999
Q ss_pred ccCccccCcccCCCCCeeeCCCCCCC------CCCEEEecccCCCCCcHHHHHHHHHHHHHHhhCC
Q psy14927 1014 NLGLEEIGIEKDEKGRVPVNSRFQTV------IPNIFAIGDCIHGPMLAHKAEDEGIVCVEGIAGD 1073 (1074)
Q Consensus 1014 ~l~l~~~gl~ld~~G~I~Vd~~~~ts------~~~IyAiGD~~~~~~~~~~A~~~G~~aA~~I~~~ 1073 (1074)
.++++..++++++ |+|.||+++||+ +|||||+|||++.+++++.|..||+.+|.||++.
T Consensus 431 ~L~l~~~gi~~~~-G~I~VDe~lqTs~~~~~~v~~IYAiGDv~g~~~La~~A~~qg~~aa~ni~g~ 495 (659)
T PTZ00153 431 NLGLDKLKIQMKR-GFVSVDEHLRVLREDQEVYDNIFCIGDANGKQMLAHTASHQALKVVDWIEGK 495 (659)
T ss_pred cCCchhcCCcccC-CEEeECCCCCcCCCCCCCCCCEEEEEecCCCccCHHHHHHHHHHHHHHHcCC
Confidence 8777888988874 999999999997 6999999999998889999999999999999874
No 39
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=99.96 E-value=1e-28 Score=308.31 Aligned_cols=267 Identities=18% Similarity=0.259 Sum_probs=212.3
Q ss_pred hhhhhhccccchHHHHHHHhh---------hhhhhccccc-cccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEee-e
Q psy14927 795 QVVLNTLGNCAAVQANYHLAT---------KLFTQAGDKG-VKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNG-H 863 (1074)
Q Consensus 795 ~~VviiGgG~AGl~aA~~la~---------~l~e~~~~~g-~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g-~ 863 (1074)
++|||||||+||+.+|..|.+ +++++.+.++ ..+.+..+.... ..+++......++...||+++.| .
T Consensus 4 ~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~Y~r~~L~~~~~~~--~~~~l~~~~~~~~~~~gI~~~~g~~ 81 (847)
T PRK14989 4 VRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIAYDRVHLSSYFSHH--TAEELSLVREGFYEKHGIKVLVGER 81 (847)
T ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCcccCCcchHhHcCC--CHHHccCCCHHHHHhCCCEEEcCCE
Confidence 359999999999999999864 6777766553 222233333322 23555555667788899999999 5
Q ss_pred EEEecCCeEEEEeCCCCeeEEEcCeEEEccCCCCC--CCCCCCCCCccee-chhhHhcchH-------------------
Q psy14927 864 GKITGPNTVTVIKSDGSTEEVKTKNILIATGSEVT--PFPGIEVDEETIV-SSTGALSLKK------------------- 921 (1074)
Q Consensus 864 v~~id~~~~~v~~~~G~~~~i~~d~lIIATG~~p~--~ipgi~~~~~~v~-t~~~~~~~~~------------------- 921 (1074)
|+.+|+....|++.+| .++.||+||||||++|. ++||.+....+++ +.++...+..
T Consensus 82 V~~Id~~~~~V~~~~G--~~i~yD~LVIATGs~p~~p~ipG~~~~~v~~~rt~~d~~~l~~~~~~~k~vvVIGgG~iGlE 159 (847)
T PRK14989 82 AITINRQEKVIHSSAG--RTVFYDKLIMATGSYPWIPPIKGSETQDCFVYRTIEDLNAIEACARRSKRGAVVGGGLLGLE 159 (847)
T ss_pred EEEEeCCCcEEEECCC--cEEECCEEEECCCCCcCCCCCCCCCCCCeEEECCHHHHHHHHHHHhcCCeEEEECCCHHHHH
Confidence 8899998888888888 67999999999999984 4556543333333 5555544321
Q ss_pred -hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCC--eEEEEEeeccCCCCceEEE
Q psy14927 922 -GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGD--NITVTIENVKDPTKKEELS 998 (1074)
Q Consensus 922 -A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~--~~~v~~~~~~~~g~~~~i~ 998 (1074)
|..|.++|.+||++++.+++++..++++....+.+.|++.||++++++.+++|.++++ ...+.+.+ +++++
T Consensus 160 ~A~~L~~~G~~VtvVe~~~~ll~~~ld~~~~~~l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~d------G~~i~ 233 (847)
T PRK14989 160 AAGALKNLGVETHVIEFAPMLMAEQLDQMGGEQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFAD------GSELE 233 (847)
T ss_pred HHHHHHHcCCeEEEEeccccchhhhcCHHHHHHHHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEECC------CCEEE
Confidence 8888999999999999999885578999999999999999999999999999976432 24455544 45899
Q ss_pred cCEEEEccCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEEecccCCCC----CcHHHHHHHHHHHHHHhhCC
Q psy14927 999 CDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGP----MLAHKAEDEGIVCVEGIAGD 1073 (1074)
Q Consensus 999 ~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~~~~----~~~~~A~~~G~~aA~~I~~~ 1073 (1074)
+|.||+++|.+||+++ +..+|++++++|+|.||++++|+.|+|||+|||+..+ .++..|..+|++||.||+|.
T Consensus 234 ~D~Vv~A~G~rPn~~L--~~~~Gl~~~~~G~I~VD~~l~Ts~p~IYAiGD~a~~~~~~~gl~~~a~~~a~vaa~~i~g~ 310 (847)
T PRK14989 234 VDFIVFSTGIRPQDKL--ATQCGLAVAPRGGIVINDSCQTSDPDIYAIGECASWNNRVFGLVAPGYKMAQVAVDHLLGS 310 (847)
T ss_pred cCEEEECCCcccCchH--HhhcCccCCCCCcEEECCCCcCCCCCEEEeecceeEcCcccccHHHHHHHHHHHHHHhcCC
Confidence 9999999999999986 6788999999999999999999999999999999753 26788999999999999985
No 40
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=99.96 E-value=2.1e-28 Score=285.86 Aligned_cols=264 Identities=20% Similarity=0.272 Sum_probs=197.7
Q ss_pred hhhhhhccccchHHHHHHHhh-------hhhhhcccccc-ccchh-hhhhhhhHHHhhhhhhHHHHhhhCCeEEEee-eE
Q psy14927 795 QVVLNTLGNCAAVQANYHLAT-------KLFTQAGDKGV-KLNLE-TMMGTKSAAVKALTGGIAHLFKSNKVTQLNG-HG 864 (1074)
Q Consensus 795 ~~VviiGgG~AGl~aA~~la~-------~l~e~~~~~g~-~~~~~-~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g-~v 864 (1074)
++||||||||||++||..|++ +++++.+.... .+.+. .+...... ........+.+...||+++.| .|
T Consensus 4 ~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~y~r~~l~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~~g~~V 81 (396)
T PRK09754 4 KTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLPYERPPLSKSMLLEDSP--QLQQVLPANWWQENNVHLHSGVTI 81 (396)
T ss_pred CcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCCCCCCCCCHHHHCCCCc--cccccCCHHHHHHCCCEEEcCCEE
Confidence 349999999999999999988 56665543322 11111 11111100 111111234566789999999 58
Q ss_pred EEecCCeEEEEeCCCCeeEEEcCeEEEccCCCCCCCCCCCCCCcceec---hhhHhcchH--------------------
Q psy14927 865 KITGPNTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGIEVDEETIVS---STGALSLKK-------------------- 921 (1074)
Q Consensus 865 ~~id~~~~~v~~~~G~~~~i~~d~lIIATG~~p~~ipgi~~~~~~v~t---~~~~~~~~~-------------------- 921 (1074)
+.+|+....|++++| .++.||+||||||++|..+|..+.....+++ .+++..+..
T Consensus 82 ~~id~~~~~v~~~~g--~~~~yd~LViATGs~~~~~p~~~~~~~~v~~~~~~~da~~l~~~~~~~~~vvViGgG~ig~E~ 159 (396)
T PRK09754 82 KTLGRDTRELVLTNG--ESWHWDQLFIATGAAARPLPLLDALGERCFTLRHAGDAARLREVLQPERSVVIVGAGTIGLEL 159 (396)
T ss_pred EEEECCCCEEEECCC--CEEEcCEEEEccCCCCCCCCCCCcCCCCEEecCCHHHHHHHHHHhhcCCeEEEECCCHHHHHH
Confidence 899998888888888 6799999999999998655544433444554 455433322
Q ss_pred hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEEeeccCCCCceEEEcCE
Q psy14927 922 GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDA 1001 (1074)
Q Consensus 922 A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~ 1001 (1074)
|..|.+.|.+||++++.+.++...+++.+...+.+.+++.||++++++.++++.. ++.+.+.+.+ ++++++|.
T Consensus 160 A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~-~~~~~v~l~~------g~~i~aD~ 232 (396)
T PRK09754 160 AASATQRRCKVTVIELAATVMGRNAPPPVQRYLLQRHQQAGVRILLNNAIEHVVD-GEKVELTLQS------GETLQADV 232 (396)
T ss_pred HHHHHHcCCeEEEEecCCcchhhhcCHHHHHHHHHHHHHCCCEEEeCCeeEEEEc-CCEEEEEECC------CCEEECCE
Confidence 7888889999999999999884457888889999999999999999999999986 3445555544 35799999
Q ss_pred EEEccCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEEecccCCC---------CCcHHHHHHHHHHHHHHhhC
Q psy14927 1002 LLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHG---------PMLAHKAEDEGIVCVEGIAG 1072 (1074)
Q Consensus 1002 vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~~~---------~~~~~~A~~~G~~aA~~I~~ 1072 (1074)
||+++|.+||+.+ +...|+..+ |.|.||++++|+.|||||+|||+.. ++.+..|..||++||.||+|
T Consensus 233 Vv~a~G~~pn~~l--~~~~gl~~~--~gi~vd~~~~ts~~~IyA~GD~a~~~~~~g~~~~~~~~~~A~~qg~~aa~ni~g 308 (396)
T PRK09754 233 VIYGIGISANDQL--AREANLDTA--NGIVIDEACRTCDPAIFAGGDVAITRLDNGALHRCESWENANNQAQIAAAAMLG 308 (396)
T ss_pred EEECCCCChhhHH--HHhcCCCcC--CCEEECCCCccCCCCEEEccceEeeeCCCCCEEEECcHHHHHHHHHHHHHHhcC
Confidence 9999999999886 466777654 5699999999999999999999852 13578999999999999997
Q ss_pred C
Q psy14927 1073 D 1073 (1074)
Q Consensus 1073 ~ 1073 (1074)
.
T Consensus 309 ~ 309 (396)
T PRK09754 309 L 309 (396)
T ss_pred C
Confidence 4
No 41
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=99.96 E-value=1.7e-28 Score=290.04 Aligned_cols=262 Identities=20% Similarity=0.268 Sum_probs=196.7
Q ss_pred hhhhhccccchHHHHHHHhh-------hhhhhcccccccc-chhhhhhhhhHHHhhhhhh-HHHHhhhCCeEEEee-eEE
Q psy14927 796 VVLNTLGNCAAVQANYHLAT-------KLFTQAGDKGVKL-NLETMMGTKSAAVKALTGG-IAHLFKSNKVTQLNG-HGK 865 (1074)
Q Consensus 796 ~VviiGgG~AGl~aA~~la~-------~l~e~~~~~g~~~-~~~~~~~~~~~~~~~l~~~-~~~~l~~~gV~~~~g-~v~ 865 (1074)
+|||||||+||+.||..+++ +++++.+..+... .++.+........+.+... ...+..+.||+++.+ +|+
T Consensus 3 ~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~V~ 82 (438)
T PRK13512 3 KIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANCALPYYIGEVVEDRKYALAYTPEKFYDRKQITVKTYHEVI 82 (438)
T ss_pred eEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcccccCCcchhhcCccCCHHHcccCCHHHHHHhCCCEEEeCCEEE
Confidence 49999999999999999987 6777766544321 1222221111111222221 233446679999875 899
Q ss_pred EecCCeEEEEeCCC---CeeEEEcCeEEEccCCCCCCCCCCCCCCcceech---hhHhcch---------H---------
Q psy14927 866 ITGPNTVTVIKSDG---STEEVKTKNILIATGSEVTPFPGIEVDEETIVSS---TGALSLK---------K--------- 921 (1074)
Q Consensus 866 ~id~~~~~v~~~~G---~~~~i~~d~lIIATG~~p~~ipgi~~~~~~v~t~---~~~~~~~---------~--------- 921 (1074)
.||++...|.+.++ +..++.||+||||||++|. +|+++. ..+++. .+...+. .
T Consensus 83 ~Id~~~~~v~~~~~~~~~~~~~~yd~lviAtGs~~~-~~~~~~--~~~~~~~~~~~~~~l~~~l~~~~~~~vvViGgG~i 159 (438)
T PRK13512 83 AINDERQTVTVLNRKTNEQFEESYDKLILSPGASAN-SLGFES--DITFTLRNLEDTDAIDQFIKANQVDKALVVGAGYI 159 (438)
T ss_pred EEECCCCEEEEEECCCCcEEeeecCEEEECCCCCCC-CCCCCC--CCeEEecCHHHHHHHHHHHhhcCCCEEEEECCCHH
Confidence 99988777776543 2335799999999999985 344543 233322 2221111 1
Q ss_pred ----hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEEeeccCCCCceEE
Q psy14927 922 ----GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEEL 997 (1074)
Q Consensus 922 ----A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i 997 (1074)
|..|+++|++||++++.++++ +.+++++.+.+.+.|++.||+++++++++++++ . .+++.+ +.++
T Consensus 160 g~E~A~~l~~~g~~Vtli~~~~~l~-~~~d~~~~~~l~~~l~~~gI~i~~~~~v~~i~~--~--~v~~~~------g~~~ 228 (438)
T PRK13512 160 SLEVLENLYERGLHPTLIHRSDKIN-KLMDADMNQPILDELDKREIPYRLNEEIDAING--N--EVTFKS------GKVE 228 (438)
T ss_pred HHHHHHHHHhCCCcEEEEecccccc-hhcCHHHHHHHHHHHHhcCCEEEECCeEEEEeC--C--EEEECC------CCEE
Confidence 888889999999999999988 789999999999999999999999999999965 2 355443 3478
Q ss_pred EcCEEEEccCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEEecccCC----------CCCcHHHHHHHHHHHH
Q psy14927 998 SCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIH----------GPMLAHKAEDEGIVCV 1067 (1074)
Q Consensus 998 ~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~~----------~~~~~~~A~~~G~~aA 1067 (1074)
++|.|++++|++||+++ ++..|++++++|+|.||+++||++|||||+|||+. .+++++.|..+|+++|
T Consensus 229 ~~D~vl~a~G~~pn~~~--l~~~gl~~~~~G~i~Vd~~~~t~~~~IyA~GD~~~~~~~~~~~~~~~~la~~A~~~a~~~a 306 (438)
T PRK13512 229 HYDMIIEGVGTHPNSKF--IESSNIKLDDKGFIPVNDKFETNVPNIYAIGDIITSHYRHVDLPASVPLAWGAHRAASIVA 306 (438)
T ss_pred EeCEEEECcCCCcChHH--HHhcCcccCCCCcEEECCCcccCCCCEEEeeeeEEeeeccCCCceecccchHHHHHHHHHH
Confidence 99999999999999997 67889999889999999999999999999999986 2357888999999999
Q ss_pred HHhhCC
Q psy14927 1068 EGIAGD 1073 (1074)
Q Consensus 1068 ~~I~~~ 1073 (1074)
+||+|.
T Consensus 307 ~ni~g~ 312 (438)
T PRK13512 307 EQIAGN 312 (438)
T ss_pred HHhcCC
Confidence 999974
No 42
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=99.96 E-value=3.8e-28 Score=285.79 Aligned_cols=263 Identities=17% Similarity=0.209 Sum_probs=199.8
Q ss_pred cchhhhhhccccchHHHHHHHhh-----hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEeeeEEEe
Q psy14927 793 QRQVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKIT 867 (1074)
Q Consensus 793 ~k~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~v~~i 867 (1074)
++++|||||||+||+.+|..|.+ +++++.+.+...+.++.+..+.... +.+...+...+...+++|+.++|+.|
T Consensus 9 ~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~~~~~~l~~~~~g~~~~-~~~~~~~~~~~~~~~~~~i~~~V~~I 87 (424)
T PTZ00318 9 KKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHMLFTPLLPQTTTGTLEF-RSICEPVRPALAKLPNRYLRAVVYDV 87 (424)
T ss_pred CCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCcchhhhHHHhcccCCCh-HHhHHHHHHHhccCCeEEEEEEEEEE
Confidence 36679999999999999999865 7888777655444444444333222 44555567777788999999999999
Q ss_pred cCCeEEEEe----------CCCCeeEEEcCeEEEccCCCCC--CCCCCCCCCcceechhhHhc-----------------
Q psy14927 868 GPNTVTVIK----------SDGSTEEVKTKNILIATGSEVT--PFPGIEVDEETIVSSTGALS----------------- 918 (1074)
Q Consensus 868 d~~~~~v~~----------~~G~~~~i~~d~lIIATG~~p~--~ipgi~~~~~~v~t~~~~~~----------------- 918 (1074)
|++...|++ .+| .++.||+||||||+.|. .+||.......+.+..+...
T Consensus 88 d~~~~~v~~~~~~~~~~~~~~g--~~i~yD~LViAtGs~~~~~~ipG~~e~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~ 165 (424)
T PTZ00318 88 DFEEKRVKCGVVSKSNNANVNT--FSVPYDKLVVAHGARPNTFNIPGVEERAFFLKEVNHARGIRKRIVQCIERASLPTT 165 (424)
T ss_pred EcCCCEEEEecccccccccCCc--eEecCCEEEECCCcccCCCCCCCHHHcCCCCCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence 987777766 344 57999999999999973 34554211111111111100
Q ss_pred -------chH-------------hhHHhh--------------cCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCE
Q psy14927 919 -------LKK-------------GSVWGR--------------LGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQ 964 (1074)
Q Consensus 919 -------~~~-------------A~~l~~--------------~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~ 964 (1074)
... |..+.. .+++||+++++++++ +.+++.+++.+.+.|++.||+
T Consensus 166 ~~~~~~~~~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll-~~~~~~~~~~~~~~L~~~gV~ 244 (424)
T PTZ00318 166 SVEERKRLLHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVL-GSFDQALRKYGQRRLRRLGVD 244 (424)
T ss_pred ChHHHhccCEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCccc-ccCCHHHHHHHHHHHHHCCCE
Confidence 001 444443 368999999999998 789999999999999999999
Q ss_pred EEeCceEEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccCCcccCCccCccccCcccCCCCCeeeCCCCC-CCCCCE
Q psy14927 965 FKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQ-TVIPNI 1043 (1074)
Q Consensus 965 i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~-ts~~~I 1043 (1074)
++++++|+++.++ . |.+.+ ++++++|++||++|.+|+. + +..++++++++|+|.||+++| |++|||
T Consensus 245 v~~~~~v~~v~~~--~--v~~~~------g~~i~~d~vi~~~G~~~~~-~--~~~~~l~~~~~G~I~Vd~~l~~~~~~~I 311 (424)
T PTZ00318 245 IRTKTAVKEVLDK--E--VVLKD------GEVIPTGLVVWSTGVGPGP-L--TKQLKVDKTSRGRISVDDHLRVKPIPNV 311 (424)
T ss_pred EEeCCeEEEEeCC--E--EEECC------CCEEEccEEEEccCCCCcc-h--hhhcCCcccCCCcEEeCCCcccCCCCCE
Confidence 9999999999763 2 44544 3589999999999999984 4 567788888899999999999 699999
Q ss_pred EEecccCCC-----CCcHHHHHHHHHHHHHHhhC
Q psy14927 1044 FAIGDCIHG-----PMLAHKAEDEGIVCVEGIAG 1072 (1074)
Q Consensus 1044 yAiGD~~~~-----~~~~~~A~~~G~~aA~~I~~ 1072 (1074)
||+|||+.. |+++..|+.||..+|+||.+
T Consensus 312 fAiGD~a~~~~~~~~~~~~~A~~qg~~~A~ni~~ 345 (424)
T PTZ00318 312 FALGDCAANEERPLPTLAQVASQQGVYLAKEFNN 345 (424)
T ss_pred EEEeccccCCCCCCCCchHHHHHHHHHHHHHHHH
Confidence 999999973 66889999999999999974
No 43
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=99.96 E-value=3.7e-28 Score=288.94 Aligned_cols=265 Identities=22% Similarity=0.290 Sum_probs=198.1
Q ss_pred hhhhhccccchHHHHHHHhh-------hhhhhcccccccc-chhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEee-eEEE
Q psy14927 796 VVLNTLGNCAAVQANYHLAT-------KLFTQAGDKGVKL-NLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNG-HGKI 866 (1074)
Q Consensus 796 ~VviiGgG~AGl~aA~~la~-------~l~e~~~~~g~~~-~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g-~v~~ 866 (1074)
+||||||||||+++|..|++ +++++.+..+... .++.+..........+.....+.+.+.||+++.+ .|+.
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~~ 81 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVSFGACGLPYFVGGFFDDPNTMIARTPEEFIKSGIDVKTEHEVVK 81 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcceeecCCCceEeccccCCHHHhhcCCHHHHHHCCCeEEecCEEEE
Confidence 49999999999999999987 6788777553221 1111111111112333444556677889999876 7888
Q ss_pred ecCCeEEEEeCC---CCeeEEE--cCeEEEccCCCCC--CCCCCCCCCcceec---hhhHhcch---------H------
Q psy14927 867 TGPNTVTVIKSD---GSTEEVK--TKNILIATGSEVT--PFPGIEVDEETIVS---STGALSLK---------K------ 921 (1074)
Q Consensus 867 id~~~~~v~~~~---G~~~~i~--~d~lIIATG~~p~--~ipgi~~~~~~v~t---~~~~~~~~---------~------ 921 (1074)
+|++...|.+.+ | .++. ||+||||||++|. ++||+.. .++++ ..+...+. .
T Consensus 82 id~~~~~v~~~~~~~~--~~~~~~yd~lviAtG~~~~~~~i~g~~~--~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvGg 157 (444)
T PRK09564 82 VDAKNKTITVKNLKTG--SIFNDTYDKLMIATGARPIIPPIKNINL--ENVYTLKSMEDGLALKELLKDEEIKNIVIIGA 157 (444)
T ss_pred EECCCCEEEEEECCCC--CEEEecCCEEEECCCCCCCCCCCCCcCC--CCEEEECCHHHHHHHHHHHhhcCCCEEEEECC
Confidence 887665665543 4 3455 9999999999983 4455432 23432 22222221 1
Q ss_pred -------hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEEeeccCCCCc
Q psy14927 922 -------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKK 994 (1074)
Q Consensus 922 -------A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~ 994 (1074)
|..+.+.|.+|+++++.++++++.+++++.+.+.+.+++.||++++++++.++.++++...+.. + +
T Consensus 158 G~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~-~------~ 230 (444)
T PRK09564 158 GFIGLEAVEAAKHLGKNVRIIQLEDRILPDSFDKEITDVMEEELRENGVELHLNEFVKSLIGEDKVEGVVT-D------K 230 (444)
T ss_pred CHHHHHHHHHHHhcCCcEEEEeCCcccCchhcCHHHHHHHHHHHHHCCCEEEcCCEEEEEecCCcEEEEEe-C------C
Confidence 7788889999999999998884468999999999999999999999999999976443333332 2 2
Q ss_pred eEEEcCEEEEccCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEEecccCCC----------CCcHHHHHHHHH
Q psy14927 995 EELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHG----------PMLAHKAEDEGI 1064 (1074)
Q Consensus 995 ~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~~~----------~~~~~~A~~~G~ 1064 (1074)
.++++|.+|+|+|++|++++ ++..|++++++|+|.||++++|++|||||+|||+.. +++++.|..||+
T Consensus 231 ~~i~~d~vi~a~G~~p~~~~--l~~~gl~~~~~g~i~vd~~~~t~~~~IyA~GD~~~~~~~~~~~~~~~~~~~~A~~qg~ 308 (444)
T PRK09564 231 GEYEADVVIVATGVKPNTEF--LEDTGLKTLKNGAIIVDEYGETSIENIYAAGDCATIYNIVSNKNVYVPLATTANKLGR 308 (444)
T ss_pred CEEEcCEEEECcCCCcCHHH--HHhcCccccCCCCEEECCCcccCCCCEEEeeeEEEEEeccCCCeeeccchHHHHHHHH
Confidence 36999999999999999987 678899988899999999999999999999999863 457899999999
Q ss_pred HHHHHhhCC
Q psy14927 1065 VCVEGIAGD 1073 (1074)
Q Consensus 1065 ~aA~~I~~~ 1073 (1074)
++|+||+|.
T Consensus 309 ~~a~ni~g~ 317 (444)
T PRK09564 309 MVGENLAGR 317 (444)
T ss_pred HHHHHhcCC
Confidence 999999974
No 44
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=99.95 E-value=2.4e-27 Score=275.47 Aligned_cols=263 Identities=19% Similarity=0.272 Sum_probs=197.2
Q ss_pred hhhhhhccccchHHHHHHHhh-------hhhhhcccc-ccccchhhhhhhhhHHHhhhhh-hHHHHhhhCCeEEEee-eE
Q psy14927 795 QVVLNTLGNCAAVQANYHLAT-------KLFTQAGDK-GVKLNLETMMGTKSAAVKALTG-GIAHLFKSNKVTQLNG-HG 864 (1074)
Q Consensus 795 ~~VviiGgG~AGl~aA~~la~-------~l~e~~~~~-g~~~~~~~~~~~~~~~~~~l~~-~~~~~l~~~gV~~~~g-~v 864 (1074)
++|||||||+||+.+|..+++ +++++.+.. ...+.+........ ...++.. ...+++.+.||+++.+ +|
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~~y~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~gv~~~~~~~V 81 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGDEYNKPDLSHVFSQGQ-RADDLTRQSAGEFAEQFNLRLFPHTWV 81 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCCCcCcCcCcHHHhCCC-CHHHhhcCCHHHHHHhCCCEEECCCEE
Confidence 359999999999999999987 567665532 22223333332221 1234333 3456677889999987 68
Q ss_pred EEecCCeEEEEeCCCCeeEEEcCeEEEccCCCCCCCCCCCCCCcceec---hhhHhcch-------H-------------
Q psy14927 865 KITGPNTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGIEVDEETIVS---STGALSLK-------K------------- 921 (1074)
Q Consensus 865 ~~id~~~~~v~~~~G~~~~i~~d~lIIATG~~p~~ipgi~~~~~~v~t---~~~~~~~~-------~------------- 921 (1074)
+.+|+....+++ +| ..+.||+||||||++|.. |.+++... +++ ..++.... .
T Consensus 82 ~~id~~~~~v~~-~~--~~~~yd~LVlATG~~~~~-p~i~G~~~-v~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~e~ 156 (377)
T PRK04965 82 TDIDAEAQVVKS-QG--NQWQYDKLVLATGASAFV-PPIPGREL-MLTLNSQQEYRAAETQLRDAQRVLVVGGGLIGTEL 156 (377)
T ss_pred EEEECCCCEEEE-CC--eEEeCCEEEECCCCCCCC-CCCCCCce-EEEECCHHHHHHHHHHhhcCCeEEEECCCHHHHHH
Confidence 899987777765 44 479999999999999842 23433222 333 23332111 1
Q ss_pred hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEEeeccCCCCceEEEcCE
Q psy14927 922 GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDA 1001 (1074)
Q Consensus 922 A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~ 1001 (1074)
|..|.+.|.+||++++.+.+++..+++.....+.+.+++.||++++++.+.++..+++...+.+.+ +.++++|.
T Consensus 157 A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~------g~~i~~D~ 230 (377)
T PRK04965 157 AMDLCRAGKAVTLVDNAASLLASLMPPEVSSRLQHRLTEMGVHLLLKSQLQGLEKTDSGIRATLDS------GRSIEVDA 230 (377)
T ss_pred HHHHHhcCCeEEEEecCCcccchhCCHHHHHHHHHHHHhCCCEEEECCeEEEEEccCCEEEEEEcC------CcEEECCE
Confidence 777888899999999999888445688899999999999999999999999998866666666544 45899999
Q ss_pred EEEccCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEEecccCCCC----CcHHHHHHHHHHHHHHhhCC
Q psy14927 1002 LLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGP----MLAHKAEDEGIVCVEGIAGD 1073 (1074)
Q Consensus 1002 vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~~~~----~~~~~A~~~G~~aA~~I~~~ 1073 (1074)
||+|+|.+|++.+ +...|++.+ +| |.||++++|+.|||||+|||+..+ +.+..|..||+.+|.||+|.
T Consensus 231 vI~a~G~~p~~~l--~~~~gl~~~-~g-i~vd~~l~ts~~~VyA~GD~a~~~~~~~~~~~~a~~~g~~~a~n~~g~ 302 (377)
T PRK04965 231 VIAAAGLRPNTAL--ARRAGLAVN-RG-IVVDSYLQTSAPDIYALGDCAEINGQVLPFLQPIQLSAMALAKNLLGQ 302 (377)
T ss_pred EEECcCCCcchHH--HHHCCCCcC-CC-EEECCCcccCCCCEEEeeecEeECCceeehHHHHHHHHHHHHHHhcCC
Confidence 9999999999987 567788875 35 999999999999999999998743 24667899999999999985
No 45
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=99.95 E-value=3e-27 Score=296.03 Aligned_cols=264 Identities=18% Similarity=0.284 Sum_probs=207.0
Q ss_pred hhhhccccchHHHHHHHhh--------hhhhhcccccc-ccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEee-eEEE
Q psy14927 797 VLNTLGNCAAVQANYHLAT--------KLFTQAGDKGV-KLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNG-HGKI 866 (1074)
Q Consensus 797 VviiGgG~AGl~aA~~la~--------~l~e~~~~~g~-~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g-~v~~ 866 (1074)
|||||||+||+.+|..+.+ +++++.+.++. .+.+..+..+.. ..+++.....+++.+.||+++.| +|+.
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~y~r~~L~~~l~g~~-~~~~l~~~~~~~~~~~gv~~~~g~~V~~ 79 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYNRILLSSVLQGEA-DLDDITLNSKDWYEKHGITLYTGETVIQ 79 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCCcccccccHHHCCCC-CHHHccCCCHHHHHHCCCEEEcCCeEEE
Confidence 6899999999999998866 67777776542 222333433322 22555555677788899999999 6999
Q ss_pred ecCCeEEEEeCCCCeeEEEcCeEEEccCCCCC--CCCCCCCCCccee-chhhHhcchH--------------------hh
Q psy14927 867 TGPNTVTVIKSDGSTEEVKTKNILIATGSEVT--PFPGIEVDEETIV-SSTGALSLKK--------------------GS 923 (1074)
Q Consensus 867 id~~~~~v~~~~G~~~~i~~d~lIIATG~~p~--~ipgi~~~~~~v~-t~~~~~~~~~--------------------A~ 923 (1074)
+|+....|++.+| .++.||+||||||+.|. ++||....+.+.+ +.++...+.. |.
T Consensus 80 Id~~~k~V~~~~g--~~~~yD~LVlATGs~p~~p~ipG~~~~~v~~~rt~~d~~~i~~~~~~~k~vvVVGgG~~GlE~A~ 157 (785)
T TIGR02374 80 IDTDQKQVITDAG--RTLSYDKLILATGSYPFILPIPGADKKGVYVFRTIEDLDAIMAMAQRFKKAAVIGGGLLGLEAAV 157 (785)
T ss_pred EECCCCEEEECCC--cEeeCCEEEECCCCCcCCCCCCCCCCCCEEEeCCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHH
Confidence 9998888988888 68999999999999984 4555433222222 3333332221 88
Q ss_pred HHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEEeeccCCCCceEEEcCEEE
Q psy14927 924 VWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALL 1003 (1074)
Q Consensus 924 ~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi 1003 (1074)
.|++.|.+||++++.+.++...+++.....+.+.+++.||++++++.++++.+++....|.+.+ ++++++|+||
T Consensus 158 ~L~~~G~~Vtvv~~~~~ll~~~ld~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~~~~v~~~d------G~~i~~D~Vi 231 (785)
T TIGR02374 158 GLQNLGMDVSVIHHAPGLMAKQLDQTAGRLLQRELEQKGLTFLLEKDTVEIVGATKADRIRFKD------GSSLEADLIV 231 (785)
T ss_pred HHHhcCCeEEEEccCCchhhhhcCHHHHHHHHHHHHHcCCEEEeCCceEEEEcCCceEEEEECC------CCEEEcCEEE
Confidence 8899999999999999988566899999999999999999999999999998765445566655 4589999999
Q ss_pred EccCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEEecccCCCC----CcHHHHHHHHHHHHHHhhCC
Q psy14927 1004 VCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGP----MLAHKAEDEGIVCVEGIAGD 1073 (1074)
Q Consensus 1004 ~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~~~~----~~~~~A~~~G~~aA~~I~~~ 1073 (1074)
+++|.+|++++ +..+|++++ |.|.||++++|+.|+|||+|||+..+ .++..|..||+++|.||+|.
T Consensus 232 ~a~G~~Pn~~l--a~~~gl~~~--ggI~Vd~~~~Ts~p~IyA~GD~a~~~~~~~gl~~~a~~qa~vaA~ni~g~ 301 (785)
T TIGR02374 232 MAAGIRPNDEL--AVSAGIKVN--RGIIVNDSMQTSDPDIYAVGECAEHNGRVYGLVAPLYEQAKVLADHICGV 301 (785)
T ss_pred ECCCCCcCcHH--HHhcCCccC--CCEEECCCcccCCCCEEEeeecceeCCcccccHHHHHHHHHHHHHHhcCC
Confidence 99999999987 567788775 66999999999999999999998743 25677899999999999975
No 46
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=99.95 E-value=9.8e-27 Score=269.44 Aligned_cols=257 Identities=19% Similarity=0.264 Sum_probs=194.7
Q ss_pred hhhhhccccchHHHHHHHhh--------hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEeeeEEEe
Q psy14927 796 VVLNTLGNCAAVQANYHLAT--------KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKIT 867 (1074)
Q Consensus 796 ~VviiGgG~AGl~aA~~la~--------~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~v~~i 867 (1074)
+|||||||+||+.+|..+++ +++++.+.......++.+..+.. ...++...+.++++..||+|+.++|+.+
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~gv~~~~~~v~~i 79 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYSGMLPGMIAGHY-SLDEIRIDLRRLARQAGARFVIAEATGI 79 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCcccchhhHHHheeC-CHHHhcccHHHHHHhcCCEEEEEEEEEE
Confidence 48999999999999999953 77877765544333333333322 1245666677888888999999999999
Q ss_pred cCCeEEEEeCCCCeeEEEcCeEEEccCCCCCCCCCCCCCCccee---chhhHhc-------------ch-H---------
Q psy14927 868 GPNTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGIEVDEETIV---SSTGALS-------------LK-K--------- 921 (1074)
Q Consensus 868 d~~~~~v~~~~G~~~~i~~d~lIIATG~~p~~ipgi~~~~~~v~---t~~~~~~-------------~~-~--------- 921 (1074)
|+....|.+.+| .++.||+||||||+.|. .|.+++...+++ +.+++.. .. .
T Consensus 80 d~~~~~V~~~~g--~~~~yD~LviAtG~~~~-~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~ 156 (364)
T TIGR03169 80 DPDRRKVLLANR--PPLSYDVLSLDVGSTTP-LSGVEGAADLAVPVKPIENFLARWEALLESADAPPGTKRLAVVGGGAA 156 (364)
T ss_pred ecccCEEEECCC--CcccccEEEEccCCCCC-CCCCCcccccccccCCHHHHHHHHHHHHHHHhcCCCCceEEEECCCHH
Confidence 998888999888 67999999999999984 233443333322 1111111 00 1
Q ss_pred ----hhHHhh----cC--CcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEEeeccCC
Q psy14927 922 ----GSVWGR----LG--AEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDP 991 (1074)
Q Consensus 922 ----A~~l~~----~G--~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~ 991 (1074)
|..+.+ .| .+||++ +.+.++ +.+++.+...+.+.|++.||++++++.++++.+ + .+.+.+
T Consensus 157 g~E~A~~l~~~~~~~g~~~~V~li-~~~~~l-~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~--~--~v~~~~---- 226 (364)
T TIGR03169 157 GVEIALALRRRLPKRGLRGQVTLI-AGASLL-PGFPAKVRRLVLRLLARRGIEVHEGAPVTRGPD--G--ALILAD---- 226 (364)
T ss_pred HHHHHHHHHHHHHhcCCCceEEEE-eCCccc-ccCCHHHHHHHHHHHHHCCCEEEeCCeeEEEcC--C--eEEeCC----
Confidence 444543 34 489999 566776 678899999999999999999999999999865 2 344443
Q ss_pred CCceEEEcCEEEEccCCcccCCccCccccCcccCCCCCeeeCCCCCC-CCCCEEEecccCCC-----CCcHHHHHHHHHH
Q psy14927 992 TKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQT-VIPNIFAIGDCIHG-----PMLAHKAEDEGIV 1065 (1074)
Q Consensus 992 g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~t-s~~~IyAiGD~~~~-----~~~~~~A~~~G~~ 1065 (1074)
+.++++|.||+++|.+|++. +...++.++++|+|.||++++| ++|||||+|||+.. |+.+..|+.||+.
T Consensus 227 --g~~i~~D~vi~a~G~~p~~~---l~~~gl~~~~~g~i~vd~~l~~~~~~~Iya~GD~~~~~~~~~~~~~~~A~~~g~~ 301 (364)
T TIGR03169 227 --GRTLPADAILWATGARAPPW---LAESGLPLDEDGFLRVDPTLQSLSHPHVFAAGDCAVITDAPRPKAGVYAVRQAPI 301 (364)
T ss_pred --CCEEecCEEEEccCCChhhH---HHHcCCCcCCCCeEEECCccccCCCCCEEEeeeeeecCCCCCCCchHHHHHhHHH
Confidence 45899999999999999864 4567888888999999999998 99999999999863 4467889999999
Q ss_pred HHHHhh
Q psy14927 1066 CVEGIA 1071 (1074)
Q Consensus 1066 aA~~I~ 1071 (1074)
+|+||.
T Consensus 302 ~a~ni~ 307 (364)
T TIGR03169 302 LAANLR 307 (364)
T ss_pred HHHHHH
Confidence 999986
No 47
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=99.95 E-value=1.2e-26 Score=261.41 Aligned_cols=263 Identities=21% Similarity=0.252 Sum_probs=190.7
Q ss_pred hhhhhccccchHHHHHHHhh-----hhhhhccccccccchh----hhhhhhh-HHHhhhhhhHHHHhhhCCeEEEeeeEE
Q psy14927 796 VVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLE----TMMGTKS-AAVKALTGGIAHLFKSNKVTQLNGHGK 865 (1074)
Q Consensus 796 ~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~----~~~~~~~-~~~~~l~~~~~~~l~~~gV~~~~g~v~ 865 (1074)
+|+||||||+|+++|..|++ +++|+.+ .|+.+... .++.... ....++...+.+.+.+.|++++.++|+
T Consensus 2 dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~~~v~ 80 (300)
T TIGR01292 2 DVIIIGAGPAGLTAAIYAARANLKTLIIEGME-PGGQLTTTTEVENYPGFPEGISGPELMEKMKEQAVKFGAEIIYEEVI 80 (300)
T ss_pred cEEEECCCHHHHHHHHHHHHCCCCEEEEeccC-CCcceeecccccccCCCCCCCChHHHHHHHHHHHHHcCCeEEEEEEE
Confidence 48999999999999999988 7888765 44433211 1121110 111355566778888899999998888
Q ss_pred EecCC--eEEEEeCCCCeeEEEcCeEEEccCCCCC--CCCCCCCC-Cccee---chhhHh-cchH-------------hh
Q psy14927 866 ITGPN--TVTVIKSDGSTEEVKTKNILIATGSEVT--PFPGIEVD-EETIV---SSTGAL-SLKK-------------GS 923 (1074)
Q Consensus 866 ~id~~--~~~v~~~~G~~~~i~~d~lIIATG~~p~--~ipgi~~~-~~~v~---t~~~~~-~~~~-------------A~ 923 (1074)
.+++. .+.+.+.+| .++.||+||+|||+.|. .+|+.... ...+. ..+... .... |.
T Consensus 81 ~v~~~~~~~~v~~~~~--~~~~~d~liiAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~ 158 (300)
T TIGR01292 81 KVDLSDRPFKVKTGDG--KEYTAKAVIIATGASARKLGIPGEDEFLGRGVSYCATCDGPFFKNKEVAVVGGGDSAIEEAL 158 (300)
T ss_pred EEEecCCeeEEEeCCC--CEEEeCEEEECCCCCcccCCCCChhhcCCccEEEeeecChhhcCCCEEEEECCChHHHHHHH
Confidence 88764 356666666 58999999999999874 24443211 01111 111111 1111 77
Q ss_pred HHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhC-CCEEEeCceEEEEEecCCeEEEEEeeccCCCCceEEEcCEE
Q psy14927 924 VWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQ-GMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDAL 1002 (1074)
Q Consensus 924 ~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~-gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~v 1002 (1074)
.+.+.+.+|+++++.+.+. . ...+.+.+++. ||++++++.++++.+++....+++.+.. ++++.++++|.|
T Consensus 159 ~l~~~~~~V~~v~~~~~~~---~----~~~~~~~l~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~-~g~~~~i~~D~v 230 (300)
T TIGR01292 159 YLTRIAKKVTLVHRRDKFR---A----EKILLDRLRKNPNIEFLWNSTVKEIVGDNKVEGVKIKNTV-TGEEEELKVDGV 230 (300)
T ss_pred HHHhhcCEEEEEEeCcccC---c----CHHHHHHHHhCCCeEEEeccEEEEEEccCcEEEEEEEecC-CCceEEEEccEE
Confidence 7788899999999987654 1 23455667777 9999999999999875533445555422 356688999999
Q ss_pred EEccCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEEecccCC-CCCcHHHHHHHHHHHHHHhhC
Q psy14927 1003 LVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIH-GPMLAHKAEDEGIVCVEGIAG 1072 (1074)
Q Consensus 1003 i~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~~-~~~~~~~A~~~G~~aA~~I~~ 1072 (1074)
|+|+|++|+.++ +... +.++++|+|.||++++|++||||++|||++ .++.+..|+.+|+.||.+|..
T Consensus 231 i~a~G~~~~~~~--l~~~-~~~~~~g~i~v~~~~~t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~~ 298 (300)
T TIGR01292 231 FIAIGHEPNTEL--LKGL-LELDEGGYIVTDEGMRTSVPGVFAAGDVRDKGYRQAVTAAGDGCIAALSAER 298 (300)
T ss_pred EEeeCCCCChHH--HHHh-heecCCCcEEECCCCccCCCCEEEeecccCcchhhhhhhhhhHHHHHHHHHh
Confidence 999999999987 4455 677888999999999999999999999998 577899999999999999864
No 48
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=2.1e-26 Score=254.51 Aligned_cols=261 Identities=21% Similarity=0.277 Sum_probs=200.8
Q ss_pred hhhhhhccccchHHHHHHHhh-----hhhhhccccccccc----hhhhhhhhh-HHHhhhhhhHHHHhhhCCeEEEeeeE
Q psy14927 795 QVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLN----LETMMGTKS-AAVKALTGGIAHLFKSNKVTQLNGHG 864 (1074)
Q Consensus 795 ~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~----~~~~~~~~~-~~~~~l~~~~~~~l~~~gV~~~~g~v 864 (1074)
.+|+|||||||||+||++++| +++......|+++. ..++|.... ....++...+.++....|+++....|
T Consensus 4 ~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~gg~~~~~~~venypg~~~~~~g~~L~~~~~~~a~~~~~~~~~~~v 83 (305)
T COG0492 4 YDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPGGQLTKTTDVENYPGFPGGILGPELMEQMKEQAEKFGVEIVEDEV 83 (305)
T ss_pred eeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCcCCccccceeecCCCCCccCCchHHHHHHHHHHHhhcCeEEEEEEE
Confidence 459999999999999999999 45555555554442 333444333 23466777788888899999999888
Q ss_pred EEecCC--eEEEEeCCCCeeEEEcCeEEEccCCCCC--CCCCCC---CCC-cceechhhHhcchH-------------hh
Q psy14927 865 KITGPN--TVTVIKSDGSTEEVKTKNILIATGSEVT--PFPGIE---VDE-ETIVSSTGALSLKK-------------GS 923 (1074)
Q Consensus 865 ~~id~~--~~~v~~~~G~~~~i~~d~lIIATG~~p~--~ipgi~---~~~-~~v~t~~~~~~~~~-------------A~ 923 (1074)
..++.. .+.|.+.+| ++++++||||||..+. .+|+-. +.+ .++.+++.++..+. |.
T Consensus 84 ~~v~~~~~~F~v~t~~~---~~~ak~vIiAtG~~~~~~~~~~e~e~~g~gv~yc~~cdg~~~~k~v~ViGgG~sAve~Al 160 (305)
T COG0492 84 EKVELEGGPFKVKTDKG---TYEAKAVIIATGAGARKLGVPGEEEFEGKGVSYCATCDGFFKGKDVVVIGGGDSAVEEAL 160 (305)
T ss_pred EEEeecCceEEEEECCC---eEEEeEEEECcCCcccCCCCCcchhhcCCceEEeeecCccccCCeEEEEcCCHHHHHHHH
Confidence 888765 688988888 4999999999999873 233211 111 13446666333333 89
Q ss_pred HHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhC-CCEEEeCceEEEEEecCCeEEEEEeeccCCCCceEEEcCEE
Q psy14927 924 VWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQ-GMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDAL 1002 (1074)
Q Consensus 924 ~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~-gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~v 1002 (1074)
+|.+.+++||+++|++.+.. . +.+.+.+++. +|++++++.+.++.+++ ...|++++.. ++..++++|.+
T Consensus 161 ~L~~~a~~Vtlv~r~~~~ra---~----~~~~~~l~~~~~i~~~~~~~i~ei~G~~-v~~v~l~~~~--~~~~~~~~~gv 230 (305)
T COG0492 161 YLSKIAKKVTLVHRRDEFRA---E----EILVERLKKNVKIEVLTNTVVKEILGDD-VEGVVLKNVK--GEEKELPVDGV 230 (305)
T ss_pred HHHHhcCeEEEEecCcccCc---C----HHHHHHHHhcCCeEEEeCCceeEEecCc-cceEEEEecC--CceEEEEeceE
Confidence 99999999999999998872 2 3344555555 89999999999999975 4456667632 56779999999
Q ss_pred EEccCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEEecccCCCCC-cHHHHHHHHHHHHHHhh
Q psy14927 1003 LVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGPM-LAHKAEDEGIVCVEGIA 1071 (1074)
Q Consensus 1003 i~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~~~~~-~~~~A~~~G~~aA~~I~ 1071 (1074)
++++|..|++++ +...++ ++++|+|.||+.++||+|||||+||++..+. ++..|..+|.+||.++.
T Consensus 231 f~~iG~~p~~~~--~~~~~~-~~~~g~I~v~~~~~TsvpGifAaGDv~~~~~rqi~ta~~~G~~Aa~~a~ 297 (305)
T COG0492 231 FIAIGHLPNTEL--LKGLGV-LDENGYIVVDEEMETSVPGIFAAGDVADKNGRQIATAAGDGAIAALSAE 297 (305)
T ss_pred EEecCCCCchHH--Hhhccc-cCCCCcEEcCCCcccCCCCEEEeEeeccCcccEEeehhhhHHHHHHHHH
Confidence 999999999988 566666 8999999999999999999999999998754 78899999999998764
No 49
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=99.94 E-value=4.4e-26 Score=281.47 Aligned_cols=260 Identities=19% Similarity=0.199 Sum_probs=189.1
Q ss_pred cchhhhhhccccchHHHHHHHhh-----hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEeeeEEEe
Q psy14927 793 QRQVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKIT 867 (1074)
Q Consensus 793 ~k~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~v~~i 867 (1074)
+.++|+||||||||++||++|++ ++|++.+..||.+... ++.++ ...++.....+.+...||+|+.|+.+.+
T Consensus 538 tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~~-IP~~R--lp~evL~~die~l~~~GVe~~~gt~Vdi 614 (1019)
T PRK09853 538 SRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKNI-IPQFR--IPAELIQHDIEFVKAHGVKFEFGCSPDL 614 (1019)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceeee-ccccc--ccHHHHHHHHHHHHHcCCEEEeCceeEE
Confidence 35669999999999999999999 8999988888876542 33222 1234445556777888999999954322
Q ss_pred cCCeEEEEeCCCCeeEEEcCeEEEccCCCCCCCCCCCCCCcceechhhHhcch----------H--------------hh
Q psy14927 868 GPNTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGIEVDEETIVSSTGALSLK----------K--------------GS 923 (1074)
Q Consensus 868 d~~~~~v~~~~G~~~~i~~d~lIIATG~~p~~ipgi~~~~~~v~t~~~~~~~~----------~--------------A~ 923 (1074)
.+++. ....||+||||||++++..+++++...++++..+++... + |.
T Consensus 615 -------~le~L--~~~gYDaVILATGA~~~~~l~IpG~~~gV~saldfL~~~k~~~~~~~~GKrVVVIGGGnVAmD~Ar 685 (1019)
T PRK09853 615 -------TVEQL--KNEGYDYVVVAIGADKNGGLKLEGGNQNVIKALPFLEEYKNKGTALKLGKHVVVVGGGNTAMDAAR 685 (1019)
T ss_pred -------Ehhhh--eeccCCEEEECcCCCCCCCCCCCCccCCceehHHHHHHHhhhcccccCCCEEEEECCChHHHHHHH
Confidence 22222 346699999999998644444555445566555544321 1 55
Q ss_pred HHhhc-C-CcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEE---Eeecc--------C
Q psy14927 924 VWGRL-G-AEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVT---IENVK--------D 990 (1074)
Q Consensus 924 ~l~~~-G-~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~---~~~~~--------~ 990 (1074)
.+.+. | .+||+++|++.-.+|..++++ .+.+ +.||++++++.+.++.+++ .+.+. +...+ .
T Consensus 686 ~a~RlgGakeVTLVyRr~~~~MPA~~eEl----e~Al-eeGVe~~~~~~p~~I~~dG-~l~~~~~~lg~~d~~Gr~~~v~ 759 (1019)
T PRK09853 686 AALRVPGVEKVTVVYRRTKQEMPAWREEY----EEAL-EDGVEFKELLNPESFDADG-TLTCRVMKLGEPDESGRRRPVE 759 (1019)
T ss_pred HHHhcCCCceEEEEEccCcccccccHHHH----HHHH-HcCCEEEeCCceEEEEcCC-cEEEEEEEeecccCCCceEEee
Confidence 56666 4 489999998743325544443 2333 4799999999999997532 22221 11000 0
Q ss_pred CCCceEEEcCEEEEccCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEEecccCCCCCcHHHHHHHHHHHHHHh
Q psy14927 991 PTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGPMLAHKAEDEGIVCVEGI 1070 (1074)
Q Consensus 991 ~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~~~~~~~~~A~~~G~~aA~~I 1070 (1074)
++++.++++|.||+|+|++|++++ +...|++++++|+|.||++++|+.|||||+|||+++|.++..|+.+|+.||.+|
T Consensus 760 tg~~~~I~aD~VIvAIG~~Pntel--le~~GL~ld~~G~I~VDetlqTs~pgVFAaGD~a~Gp~tvv~Ai~qGr~AA~nI 837 (1019)
T PRK09853 760 TGETVTLEADTVITAIGEQVDTEL--LKANGIPLDKKGWPVVDANGETSLTNVYMIGDVQRGPSTIVAAIADARRAADAI 837 (1019)
T ss_pred CCCeEEEEeCEEEECCCCcCChhH--HHhcCccccCCCCEEeCCCcccCCCCEEEEeccccCchHHHHHHHHHHHHHHHH
Confidence 245678999999999999999998 567889999999999999999999999999999998989999999999999999
Q ss_pred hC
Q psy14927 1071 AG 1072 (1074)
Q Consensus 1071 ~~ 1072 (1074)
++
T Consensus 838 ~~ 839 (1019)
T PRK09853 838 LS 839 (1019)
T ss_pred hh
Confidence 86
No 50
>PRK12831 putative oxidoreductase; Provisional
Probab=99.94 E-value=3e-26 Score=271.35 Aligned_cols=262 Identities=18% Similarity=0.139 Sum_probs=186.8
Q ss_pred cchhhhhhccccchHHHHHHHhh-----hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEeeeEEEe
Q psy14927 793 QRQVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKIT 867 (1074)
Q Consensus 793 ~k~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~v~~i 867 (1074)
+.++|+||||||||++||++|++ ++|++.+..||.+.+. ++.+.. ..+.+.....+.+...||+|+.++...
T Consensus 139 ~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~g-ip~~~l-~~~~~~~~~~~~~~~~gv~i~~~~~v~- 215 (464)
T PRK12831 139 KGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLVYG-IPEFRL-PKETVVKKEIENIKKLGVKIETNVVVG- 215 (464)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeeeec-CCCccC-CccHHHHHHHHHHHHcCCEEEcCCEEC-
Confidence 35669999999999999999999 8899888888776442 222110 112255555677888899999996431
Q ss_pred cCCeEEEEeCCCCeeEEEcCeEEEccCC-CCC--CCCCCCCCCcceechhhHhcc------------------hH-----
Q psy14927 868 GPNTVTVIKSDGSTEEVKTKNILIATGS-EVT--PFPGIEVDEETIVSSTGALSL------------------KK----- 921 (1074)
Q Consensus 868 d~~~~~v~~~~G~~~~i~~d~lIIATG~-~p~--~ipgi~~~~~~v~t~~~~~~~------------------~~----- 921 (1074)
..+++++. ...+.||+||||||+ .|+ ++||. +...+++..+++.. +.
T Consensus 216 ----~~v~~~~~-~~~~~~d~viiAtGa~~~~~l~ipG~--~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIG 288 (464)
T PRK12831 216 ----KTVTIDEL-LEEEGFDAVFIGSGAGLPKFMGIPGE--NLNGVFSANEFLTRVNLMKAYKPEYDTPIKVGKKVAVVG 288 (464)
T ss_pred ----CcCCHHHH-HhccCCCEEEEeCCCCCCCCCCCCCc--CCcCcEEHHHHHHHHHhcccccccccCcccCCCeEEEEC
Confidence 11222221 023579999999999 464 34443 23457776665422 11
Q ss_pred --------hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCe--EEEEEeec---
Q psy14927 922 --------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDN--ITVTIENV--- 988 (1074)
Q Consensus 922 --------A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~--~~v~~~~~--- 988 (1074)
|..+.++|.+||++++.+...++....++ +.+.+.||++++++.+.++..++++ ..|++...
T Consensus 289 gG~va~d~A~~l~r~Ga~Vtlv~r~~~~~m~a~~~e~-----~~a~~eGV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~ 363 (464)
T PRK12831 289 GGNVAMDAARTALRLGAEVHIVYRRSEEELPARVEEV-----HHAKEEGVIFDLLTNPVEILGDENGWVKGMKCIKMELG 363 (464)
T ss_pred CcHHHHHHHHHHHHcCCEEEEEeecCcccCCCCHHHH-----HHHHHcCCEEEecccceEEEecCCCeEEEEEEEEEEec
Confidence 78888999999999987643323322222 3456789999999999999764332 22333210
Q ss_pred --cC---------CCCceEEEcCEEEEccCCcccCCccCccc-cCcccCCCCCeeeCCC-CCCCCCCEEEecccCCCCCc
Q psy14927 989 --KD---------PTKKEELSCDALLVCVGRRPYTHNLGLEE-IGIEKDEKGRVPVNSR-FQTVIPNIFAIGDCIHGPML 1055 (1074)
Q Consensus 989 --~~---------~g~~~~i~~D~vi~a~G~~p~~~~l~l~~-~gl~ld~~G~I~Vd~~-~~ts~~~IyAiGD~~~~~~~ 1055 (1074)
+. +|+..++++|+||+++|+.|++.+ +.. .|++++++|+|.||++ ++||.|||||+|||+.++.+
T Consensus 364 ~~d~~Gr~~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~--~~~~~gl~~~~~G~i~vd~~~~~Ts~pgVfAaGD~~~g~~~ 441 (464)
T PRK12831 364 EPDASGRRRPVEIEGSEFVLEVDTVIMSLGTSPNPLI--SSTTKGLKINKRGCIVADEETGLTSKEGVFAGGDAVTGAAT 441 (464)
T ss_pred CcCCCCCccceecCCceEEEECCEEEECCCCCCChhh--hcccCCceECCCCcEEECCCCCccCCCCEEEeCCCCCCchH
Confidence 00 133457999999999999999986 344 6888999999999987 99999999999999998889
Q ss_pred HHHHHHHHHHHHHHhh
Q psy14927 1056 AHKAEDEGIVCVEGIA 1071 (1074)
Q Consensus 1056 ~~~A~~~G~~aA~~I~ 1071 (1074)
+..|+.+|+.||.+|.
T Consensus 442 v~~Ai~~G~~AA~~I~ 457 (464)
T PRK12831 442 VILAMGAGKKAAKAID 457 (464)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999999985
No 51
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=99.94 E-value=2.5e-26 Score=271.66 Aligned_cols=259 Identities=19% Similarity=0.169 Sum_probs=188.7
Q ss_pred chhhhhhccccchHHHHHHHhh-----hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEeeeEEEec
Q psy14927 794 RQVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITG 868 (1074)
Q Consensus 794 k~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~v~~id 868 (1074)
.++|+||||||+|+++|..|++ ++|++.+..|+.+.+. ++.+. ...++.....+.+.+.||+|+.++++.
T Consensus 133 ~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l~~g-ip~~~--~~~~~~~~~~~~l~~~gv~~~~~~~v~-- 207 (449)
T TIGR01316 133 HKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVTYG-IPEFR--LPKEIVVTEIKTLKKLGVTFRMNFLVG-- 207 (449)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEeeec-CCCcc--CCHHHHHHHHHHHHhCCcEEEeCCccC--
Confidence 5569999999999999999998 8999888888776543 22211 113444445566778899999996431
Q ss_pred CCeEEEEeCCCCeeEEEcCeEEEccCC-CCC--CCCCCCCCCcceechhhHhcc-------------------hH-----
Q psy14927 869 PNTVTVIKSDGSTEEVKTKNILIATGS-EVT--PFPGIEVDEETIVSSTGALSL-------------------KK----- 921 (1074)
Q Consensus 869 ~~~~~v~~~~G~~~~i~~d~lIIATG~-~p~--~ipgi~~~~~~v~t~~~~~~~-------------------~~----- 921 (1074)
..+++.++ ...||+||||||+ .|. ++||.+ ..++++..+++.. +.
T Consensus 208 ---~~v~~~~~---~~~yd~viiAtGa~~p~~~~ipG~~--~~gv~~~~~~l~~~~~~~~~~~~~~~~~~~~gk~VvVIG 279 (449)
T TIGR01316 208 ---KTATLEEL---FSQYDAVFIGTGAGLPKLMNIPGEE--LCGVYSANDFLTRANLMKAYEFPHADTPVYAGKSVVVIG 279 (449)
T ss_pred ---CcCCHHHH---HhhCCEEEEeCCCCCCCcCCCCCCC--CCCcEEHHHHHHHHhhcccccccccCCcccCCCeEEEEC
Confidence 22333332 3469999999998 453 344432 3346655544311 11
Q ss_pred --------hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCe--EEEEEeec---
Q psy14927 922 --------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDN--ITVTIENV--- 988 (1074)
Q Consensus 922 --------A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~--~~v~~~~~--- 988 (1074)
|..+.++|.+||+++++++..++.. ....+.+++.||++++++.++++.+++++ ..|++...
T Consensus 280 gG~~a~d~A~~l~~~G~~Vtlv~~~~~~~~~~~-----~~~~~~l~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~ 354 (449)
T TIGR01316 280 GGNTAVDSARTALRLGAEVHCLYRRTREDMTAR-----VEEIAHAEEEGVKFHFLCQPVEIIGDEEGNVRAVKFRKMDCQ 354 (449)
T ss_pred CCHHHHHHHHHHHHcCCEEEEEeecCcccCCCC-----HHHHHHHHhCCCEEEeccCcEEEEEcCCCeEEEEEEEEEEec
Confidence 8888899999999998875432222 12235678899999999999999864332 23444310
Q ss_pred ----cC-------CCCceEEEcCEEEEccCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEEecccCCCCCcHH
Q psy14927 989 ----KD-------PTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGPMLAH 1057 (1074)
Q Consensus 989 ----~~-------~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~~~~~~~~ 1057 (1074)
++ +++..++++|+||+++|+.|++.+ ++..|++++++|+|.||++++|+.|||||+|||++++.++.
T Consensus 355 ~~~~~g~~~~~~~~~~~~~i~~D~Vi~AiG~~p~~~~--l~~~gl~~~~~G~i~vd~~~~Ts~~~VfA~GD~~~g~~~v~ 432 (449)
T TIGR01316 355 EQIDSGERRFLPCGDAECKLEADAVIVAIGNGSNPIM--AETTRLKTSERGTIVVDEDQRTSIPGVFAGGDIILGAATVI 432 (449)
T ss_pred CcCCCCCeeeeecCCceEEEECCEEEECCCCCCCchh--hhccCcccCCCCeEEeCCCCccCCCCEEEecCCCCCcHHHH
Confidence 00 133457999999999999999876 57788999999999999999999999999999998888899
Q ss_pred HHHHHHHHHHHHhhC
Q psy14927 1058 KAEDEGIVCVEGIAG 1072 (1074)
Q Consensus 1058 ~A~~~G~~aA~~I~~ 1072 (1074)
.|+.+|+.||.+|..
T Consensus 433 ~Ai~~G~~AA~~I~~ 447 (449)
T TIGR01316 433 RAMGQGKRAAKSINE 447 (449)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999999863
No 52
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=99.93 E-value=1.5e-25 Score=278.61 Aligned_cols=260 Identities=22% Similarity=0.195 Sum_probs=186.2
Q ss_pred cchhhhhhccccchHHHHHHHhh-----hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEeeeEEEe
Q psy14927 793 QRQVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKIT 867 (1074)
Q Consensus 793 ~k~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~v~~i 867 (1074)
++++|+||||||||++||++|++ ++||+.+..||.+... ++.++ ...++.....+.+...||+|+.|....
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~~~-IP~~r--lp~e~l~~~ie~l~~~GVe~~~g~~~d- 611 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKNI-IPEFR--ISAESIQKDIELVKFHGVEFKYGCSPD- 611 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceeeec-ccccC--CCHHHHHHHHHHHHhcCcEEEEecccc-
Confidence 35669999999999999999999 8999998888887543 22221 113344445567777899999983211
Q ss_pred cCCeEEEEeCCCCeeEEEcCeEEEccCCCCCCCCCCCCCCcceechhhHhcc----------hH--------------hh
Q psy14927 868 GPNTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGIEVDEETIVSSTGALSL----------KK--------------GS 923 (1074)
Q Consensus 868 d~~~~~v~~~~G~~~~i~~d~lIIATG~~p~~ipgi~~~~~~v~t~~~~~~~----------~~--------------A~ 923 (1074)
.. +.+. ....||+||||||++++..+++++....+++..+++.. .+ |.
T Consensus 612 ----~~--ve~l--~~~gYDaVIIATGA~~~~~l~I~G~~~~v~~avefL~~~~~~~~~~~~GK~VVVIGGGnvAmD~Ar 683 (1012)
T TIGR03315 612 ----LT--VAEL--KNQGYKYVILAIGAWKHGPLRLEGGGERVLKSLEFLRAFKEGPTINPLGKHVVVVGGGNTAMDAAR 683 (1012)
T ss_pred ----eE--hhhh--hcccccEEEECCCCCCCCCCCcCCCCcceeeHHHHHHHhhccccccccCCeEEEECCCHHHHHHHH
Confidence 11 1222 34569999999999864444455545566665554431 11 55
Q ss_pred HHhhc-CC-cEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEEe---ecc--------C
Q psy14927 924 VWGRL-GA-EVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIE---NVK--------D 990 (1074)
Q Consensus 924 ~l~~~-G~-~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~---~~~--------~ 990 (1074)
.+.+. |. +||+++|++.-.++...+++ .+.+ +.||+++++..+.++.+ +.+.+... ..+ .
T Consensus 684 ~a~Rl~Ga~kVtLVyRr~~~~Mpa~~eEl----~~al-eeGVe~~~~~~p~~I~~--g~l~v~~~~l~~~d~sGr~~~v~ 756 (1012)
T TIGR03315 684 AALRVPGVEKVTVVYRRTKRYMPASREEL----EEAL-EDGVDFKELLSPESFED--GTLTCEVMKLGEPDASGRRRPVG 756 (1012)
T ss_pred HHHHhCCCceEEEEEccCccccccCHHHH----HHHH-HcCCEEEeCCceEEEEC--CeEEEEEEEeecccCCCceeeec
Confidence 55555 75 89999988743325554443 2333 57999999999988873 33332211 000 0
Q ss_pred CCCceEEEcCEEEEccCCcccCCccCccccCcccCCCCCeeeCCC-CCCCCCCEEEecccCCCCCcHHHHHHHHHHHHHH
Q psy14927 991 PTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSR-FQTVIPNIFAIGDCIHGPMLAHKAEDEGIVCVEG 1069 (1074)
Q Consensus 991 ~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~-~~ts~~~IyAiGD~~~~~~~~~~A~~~G~~aA~~ 1069 (1074)
+|++.++++|+||+|+|++|++++ +...|++++.+|+|.||+. ++|+.|||||+|||+.+|.++..|+.+|+.||.+
T Consensus 757 ~Gee~~I~aD~VIvAiG~~Pnt~l--le~~GL~ld~~G~I~VD~~~~~Ts~pgVFAaGD~a~GP~tVv~AIaqGr~AA~n 834 (1012)
T TIGR03315 757 TGETVDLPADTVIAAVGEQVDTDL--LQKNGIPLDEYGWPVVNQATGETNITNVFVIGDANRGPATIVEAIADGRKAANA 834 (1012)
T ss_pred CCCeEEEEeCEEEEecCCcCChHH--HHhcCcccCCCCCEEeCCCCCccCCCCEEEEeCcCCCccHHHHHHHHHHHHHHH
Confidence 355568999999999999999997 5678999999999999975 8999999999999998898999999999999999
Q ss_pred hhCC
Q psy14927 1070 IAGD 1073 (1074)
Q Consensus 1070 I~~~ 1073 (1074)
|++.
T Consensus 835 Il~~ 838 (1012)
T TIGR03315 835 ILSR 838 (1012)
T ss_pred Hhcc
Confidence 9853
No 53
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=99.93 E-value=1.8e-25 Score=269.03 Aligned_cols=263 Identities=20% Similarity=0.293 Sum_probs=190.7
Q ss_pred chhhhhhccccchHHHHHHHhh-----hhhhhccccccccc----hhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEee-e
Q psy14927 794 RQVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLN----LETMMGTKSAAVKALTGGIAHLFKSNKVTQLNG-H 863 (1074)
Q Consensus 794 k~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~----~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g-~ 863 (1074)
..+|+||||||||++||.++++ ++++. ..|+++. +..++........++...+.+.++..||+++.+ +
T Consensus 212 ~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~--~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~gv~i~~~~~ 289 (515)
T TIGR03140 212 PYDVLVVGGGPAGAAAAIYAARKGLRTAMVAE--RIGGQVKDTVGIENLISVPYTTGSQLAANLEEHIKQYPIDLMENQR 289 (515)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEec--CCCCccccCcCcccccccCCCCHHHHHHHHHHHHHHhCCeEEcCCE
Confidence 3459999999999999999999 55543 4555442 112211111122456666778888889999997 5
Q ss_pred EEEecC--CeEEEEeCCCCeeEEEcCeEEEccCCCCCCCCCCCCCC----ccee---chhhHhcch-H------------
Q psy14927 864 GKITGP--NTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGIEVDE----ETIV---SSTGALSLK-K------------ 921 (1074)
Q Consensus 864 v~~id~--~~~~v~~~~G~~~~i~~d~lIIATG~~p~~ipgi~~~~----~~v~---t~~~~~~~~-~------------ 921 (1074)
|+.++. +.+.+++++| ..+.||+||||||++|.. |++++.. ..+. .++...... +
T Consensus 290 V~~I~~~~~~~~v~~~~g--~~i~~d~lIlAtGa~~~~-~~ipG~~~~~~~~v~~~~~~~~~~~~~k~VvViGgG~~g~E 366 (515)
T TIGR03140 290 AKKIETEDGLIVVTLESG--EVLKAKSVIVATGARWRK-LGVPGEKEYIGKGVAYCPHCDGPFFKGKDVAVIGGGNSGIE 366 (515)
T ss_pred EEEEEecCCeEEEEECCC--CEEEeCEEEECCCCCcCC-CCCCCHHHcCCCeEEEeeccChhhcCCCEEEEECCcHHHHH
Confidence 777754 3567777777 579999999999998742 2333321 1122 122211111 1
Q ss_pred -hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHh-CCCEEEeCceEEEEEecCCeE-EEEEeeccCCCCceEEE
Q psy14927 922 -GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGK-QGMQFKLGTKVTGASKSGDNI-TVTIENVKDPTKKEELS 998 (1074)
Q Consensus 922 -A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~-~gV~i~~~~~v~~i~~~~~~~-~v~~~~~~~~g~~~~i~ 998 (1074)
|..|+..|.+||++++.+.+.. ...+.+.+++ .||++++++.++++.++++.+ .|++.+.. ++++++++
T Consensus 367 ~A~~L~~~g~~Vtli~~~~~l~~-------~~~l~~~l~~~~gV~i~~~~~v~~i~~~~~~v~~v~~~~~~-~~~~~~i~ 438 (515)
T TIGR03140 367 AAIDLAGIVRHVTVLEFADELKA-------DKVLQDKLKSLPNVDILTSAQTTEIVGDGDKVTGIRYQDRN-SGEEKQLD 438 (515)
T ss_pred HHHHHHhcCcEEEEEEeCCcCCh-------hHHHHHHHhcCCCCEEEECCeeEEEEcCCCEEEEEEEEECC-CCcEEEEE
Confidence 7888888999999998876651 2445667765 699999999999998764443 46666532 34557899
Q ss_pred cCEEEEccCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEEecccCCCC-CcHHHHHHHHHHHHHHhhC
Q psy14927 999 CDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGP-MLAHKAEDEGIVCVEGIAG 1072 (1074)
Q Consensus 999 ~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~~~~-~~~~~A~~~G~~aA~~I~~ 1072 (1074)
+|.||+++|++|+++++ ... ++++++|+|.||++++|++|||||+|||++.| .++..|+.+|..||.+|..
T Consensus 439 ~D~vi~a~G~~Pn~~~l--~~~-~~~~~~G~I~vd~~~~Ts~p~IyAaGDv~~~~~~~~~~A~~~G~~Aa~~i~~ 510 (515)
T TIGR03140 439 LDGVFVQIGLVPNTEWL--KDA-VELNRRGEIVIDERGRTSVPGIFAAGDVTTVPYKQIIIAMGEGAKAALSAFD 510 (515)
T ss_pred cCEEEEEeCCcCCchHH--hhh-cccCCCCeEEECCCCCCCCCCEEEcccccCCccceEEEEEccHHHHHHHHHH
Confidence 99999999999999984 444 78888899999999999999999999999865 4678899999999999864
No 54
>PRK10262 thioredoxin reductase; Provisional
Probab=99.93 E-value=3.7e-25 Score=251.60 Aligned_cols=266 Identities=18% Similarity=0.216 Sum_probs=185.0
Q ss_pred chhhhhhccccchHHHHHHHhh-----hhhhhccccccccchh----hhhhhhh-HHHhhhhhhHHHHhhhCCeEEEeee
Q psy14927 794 RQVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLE----TMMGTKS-AAVKALTGGIAHLFKSNKVTQLNGH 863 (1074)
Q Consensus 794 k~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~----~~~~~~~-~~~~~l~~~~~~~l~~~gV~~~~g~ 863 (1074)
+++|+||||||||++||..+++ ++++.. ..|+.+... .++.... .....+...+......++++++.++
T Consensus 6 ~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~-~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (321)
T PRK10262 6 HSKLLILGSGPAGYTAAVYAARANLQPVLITGM-EKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFDH 84 (321)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCCeEEEEee-cCCCceecCceECCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEeeE
Confidence 4459999999999999999988 566643 445443221 1111100 0112344556677777788888887
Q ss_pred EEEecC--CeEEEEeCCCCeeEEEcCeEEEccCCCCCCCCCCCCCC----cce---echhhHhcchH-------------
Q psy14927 864 GKITGP--NTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGIEVDE----ETI---VSSTGALSLKK------------- 921 (1074)
Q Consensus 864 v~~id~--~~~~v~~~~G~~~~i~~d~lIIATG~~p~~ipgi~~~~----~~v---~t~~~~~~~~~------------- 921 (1074)
++.++. ..++++.+++ .+.||+||||||+.|.. |++++.. ..+ ...+......+
T Consensus 85 v~~v~~~~~~~~v~~~~~---~~~~d~vilAtG~~~~~-~~i~g~~~~~~~~v~~~~~~~~~~~~g~~vvVvGgG~~g~e 160 (321)
T PRK10262 85 INKVDLQNRPFRLTGDSG---EYTCDALIIATGASARY-LGLPSEEAFKGRGVSACATCDGFFYRNQKVAVIGGGNTAVE 160 (321)
T ss_pred EEEEEecCCeEEEEecCC---EEEECEEEECCCCCCCC-CCCCCHHHcCCCcEEEeecCCHHHcCCCEEEEECCCHHHHH
Confidence 766654 3444544333 68999999999999742 2333321 111 12222221111
Q ss_pred -hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCe-EEEEEeeccCCCCceEEEc
Q psy14927 922 -GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDN-ITVTIENVKDPTKKEELSC 999 (1074)
Q Consensus 922 -A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~-~~v~~~~~~~~g~~~~i~~ 999 (1074)
|..|++.|++||++++.+.+. .++.+.+.+.+.|++.||++++++.++++.+++.+ ..|++.+...+++.+++++
T Consensus 161 ~A~~l~~~~~~Vtlv~~~~~~~---~~~~~~~~~~~~l~~~gV~i~~~~~v~~v~~~~~~~~~v~~~~~~~~~~~~~i~~ 237 (321)
T PRK10262 161 EALYLSNIASEVHLIHRRDGFR---AEKILIKRLMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDV 237 (321)
T ss_pred HHHHHHhhCCEEEEEEECCccC---CCHHHHHHHHhhccCCCeEEEeCCEEEEEEcCCccEEEEEEEEcCCCCeEEEEEC
Confidence 788888999999999987653 34667888889999999999999999999876433 3455554210133468999
Q ss_pred CEEEEccCCcccCCccCccccCcccCCCCCeeeCC-----CCCCCCCCEEEecccCCC-CCcHHHHHHHHHHHHHHhh
Q psy14927 1000 DALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNS-----RFQTVIPNIFAIGDCIHG-PMLAHKAEDEGIVCVEGIA 1071 (1074)
Q Consensus 1000 D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~-----~~~ts~~~IyAiGD~~~~-~~~~~~A~~~G~~aA~~I~ 1071 (1074)
|.||+++|++||+.++ . .++.++ +|+|.||+ +++|++|||||+|||++. +.++..|+.+|..||..|.
T Consensus 238 D~vv~a~G~~p~~~l~--~-~~l~~~-~g~i~vd~~~~~~~~~t~~~~VyA~GD~~~~~~~~~~~A~~~g~~Aa~~~~ 311 (321)
T PRK10262 238 AGLFVAIGHSPNTAIF--E-GQLELE-NGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIYRQAITSAGTGCMAALDAE 311 (321)
T ss_pred CEEEEEeCCccChhHh--h-cccccc-CCEEEECCCCcccccccCCCCEEECeeccCCCcceEEEEehhHHHHHHHHH
Confidence 9999999999999864 2 245554 58999997 678999999999999975 4567779999999999875
No 55
>KOG1336|consensus
Probab=99.93 E-value=4.6e-25 Score=245.20 Aligned_cols=262 Identities=22% Similarity=0.288 Sum_probs=199.9
Q ss_pred chhhhhhccccchHHHHHHHhh-------hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEee-eEE
Q psy14927 794 RQVVLNTLGNCAAVQANYHLAT-------KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNG-HGK 865 (1074)
Q Consensus 794 k~~VviiGgG~AGl~aA~~la~-------~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g-~v~ 865 (1074)
-++|+|+||||+|..|+.++.. +++.....+ ..+.+.++.........+.....++++..||+++++ .|+
T Consensus 74 ar~fvivGgG~~g~vaie~~r~~g~~~ri~l~~~~~~~--pydr~~Ls~~~~~~~~~~a~r~~e~Yke~gIe~~~~t~v~ 151 (478)
T KOG1336|consen 74 ARHFVIVGGGPGGAVAIETLRQVGFTERIALVKREYLL--PYDRARLSKFLLTVGEGLAKRTPEFYKEKGIELILGTSVV 151 (478)
T ss_pred cceEEEEcCCchhhhhHhhHHhhCCCcceEEEeccccC--cccchhcccceeeccccccccChhhHhhcCceEEEcceeE
Confidence 4459999999999999999988 222211111 112222222222223445555667888999999999 599
Q ss_pred EecCCeEEEEeCCCCeeEEEcCeEEEccCCCCC--CCCCCCCCCcceechhhHhcchH----------------------
Q psy14927 866 ITGPNTVTVIKSDGSTEEVKTKNILIATGSEVT--PFPGIEVDEETIVSSTGALSLKK---------------------- 921 (1074)
Q Consensus 866 ~id~~~~~v~~~~G~~~~i~~d~lIIATG~~p~--~ipgi~~~~~~v~t~~~~~~~~~---------------------- 921 (1074)
.+|-...+|++.+| +.+.|++||||||+.|. ++||.. ..++.+..++.+...
T Consensus 152 ~~D~~~K~l~~~~G--e~~kys~LilATGs~~~~l~~pG~~--~~nv~~ireieda~~l~~~~~~~~~vV~vG~G~ig~E 227 (478)
T KOG1336|consen 152 KADLASKTLVLGNG--ETLKYSKLIIATGSSAKTLDIPGVE--LKNVFYLREIEDANRLVAAIQLGGKVVCVGGGFIGME 227 (478)
T ss_pred EeeccccEEEeCCC--ceeecceEEEeecCccccCCCCCcc--ccceeeeccHHHHHHHHHHhccCceEEEECchHHHHH
Confidence 99999999999999 88999999999999764 556654 344443333333222
Q ss_pred -hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCe--EEEEEeeccCCCCceEEE
Q psy14927 922 -GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDN--ITVTIENVKDPTKKEELS 998 (1074)
Q Consensus 922 -A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~--~~v~~~~~~~~g~~~~i~ 998 (1074)
+..+...+.+||+|++.+.+++.-+.+.+.+.++..++++||++++++.+.+++...++ ..|.+.+ +.+++
T Consensus 228 vaa~l~~~~~~VT~V~~e~~~~~~lf~~~i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~d------g~~l~ 301 (478)
T KOG1336|consen 228 VAAALVSKAKSVTVVFPEPWLLPRLFGPSIGQFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLKD------GKTLE 301 (478)
T ss_pred HHHHHHhcCceEEEEccCccchhhhhhHHHHHHHHHHHHhcCeEEEEecceeecccCCCCcEEEEEecc------CCEec
Confidence 55556668899999999999966789999999999999999999999999999987755 4455544 67999
Q ss_pred cCEEEEccCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEEecccCCCCC----------cHHHHHHHHHHHHH
Q psy14927 999 CDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGPM----------LAHKAEDEGIVCVE 1068 (1074)
Q Consensus 999 ~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~~~~~----------~~~~A~~~G~~aA~ 1068 (1074)
+|.|++.+|.+|++.++ +. |..++..|+|.||+++||++|||||+||+++.|. -+..|..+|+.++.
T Consensus 302 adlvv~GiG~~p~t~~~--~~-g~~~~~~G~i~V~~~f~t~~~~VyAiGDva~fp~~~~~~~~~v~H~~~A~~~g~~av~ 378 (478)
T KOG1336|consen 302 ADLVVVGIGIKPNTSFL--EK-GILLDSKGGIKVDEFFQTSVPNVYAIGDVATFPLKGYGEDRRVEHVDHARASGRQAVK 378 (478)
T ss_pred cCeEEEeeccccccccc--cc-cceecccCCEeehhceeeccCCcccccceeecccccccccccchHHHHHHHHHHhhhh
Confidence 99999999999999984 44 8888999999999999999999999999998542 24567888886655
Q ss_pred Hh
Q psy14927 1069 GI 1070 (1074)
Q Consensus 1069 ~I 1070 (1074)
.|
T Consensus 379 ai 380 (478)
T KOG1336|consen 379 AI 380 (478)
T ss_pred hh
Confidence 54
No 56
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=99.92 E-value=9.1e-25 Score=263.24 Aligned_cols=263 Identities=21% Similarity=0.293 Sum_probs=191.8
Q ss_pred chhhhhhccccchHHHHHHHhh-----hhhhhccccccccc----hhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEee-e
Q psy14927 794 RQVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLN----LETMMGTKSAAVKALTGGIAHLFKSNKVTQLNG-H 863 (1074)
Q Consensus 794 k~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~----~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g-~ 863 (1074)
..+|+||||||||++||.++++ ++++. ..|+++. +..++........++...+...++++|++++.+ +
T Consensus 211 ~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~--~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~ 288 (517)
T PRK15317 211 PYDVLVVGGGPAGAAAAIYAARKGIRTGIVAE--RFGGQVLDTMGIENFISVPETEGPKLAAALEEHVKEYDVDIMNLQR 288 (517)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEec--CCCCeeeccCcccccCCCCCCCHHHHHHHHHHHHHHCCCEEEcCCE
Confidence 3459999999999999999999 45543 3555442 222222212223456677888888899999987 6
Q ss_pred EEEecCC--eEEEEeCCCCeeEEEcCeEEEccCCCCC--CCCCCCC-CCccee---chhhHh-cchH-------------
Q psy14927 864 GKITGPN--TVTVIKSDGSTEEVKTKNILIATGSEVT--PFPGIEV-DEETIV---SSTGAL-SLKK------------- 921 (1074)
Q Consensus 864 v~~id~~--~~~v~~~~G~~~~i~~d~lIIATG~~p~--~ipgi~~-~~~~v~---t~~~~~-~~~~------------- 921 (1074)
|+.++.. .+.|.+.+| .++.||.||+|||++|+ .+||... ....+. +++... ..+.
T Consensus 289 V~~I~~~~~~~~V~~~~g--~~i~a~~vViAtG~~~r~~~ipG~~~~~~~~v~~~~~~~~~~~~gk~VvVVGgG~~g~e~ 366 (517)
T PRK15317 289 ASKLEPAAGLIEVELANG--AVLKAKTVILATGARWRNMNVPGEDEYRNKGVAYCPHCDGPLFKGKRVAVIGGGNSGVEA 366 (517)
T ss_pred EEEEEecCCeEEEEECCC--CEEEcCEEEECCCCCcCCCCCCCHHHhcCceEEEeeccCchhcCCCEEEEECCCHHHHHH
Confidence 8887653 567777777 57999999999999874 2343211 111121 222221 1111
Q ss_pred hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHh-CCCEEEeCceEEEEEecCCe-EEEEEeeccCCCCceEEEc
Q psy14927 922 GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGK-QGMQFKLGTKVTGASKSGDN-ITVTIENVKDPTKKEELSC 999 (1074)
Q Consensus 922 A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~-~gV~i~~~~~v~~i~~~~~~-~~v~~~~~~~~g~~~~i~~ 999 (1074)
|..|+..|++||++++++.+. . ...+.+.+.+ .||++++++.++++.++++. ..+++.+.. +++.+++++
T Consensus 367 A~~L~~~~~~Vtlv~~~~~l~-~------~~~l~~~l~~~~gI~i~~~~~v~~i~~~~g~v~~v~~~~~~-~g~~~~i~~ 438 (517)
T PRK15317 367 AIDLAGIVKHVTVLEFAPELK-A------DQVLQDKLRSLPNVTIITNAQTTEVTGDGDKVTGLTYKDRT-TGEEHHLEL 438 (517)
T ss_pred HHHHHhcCCEEEEEEECcccc-c------cHHHHHHHhcCCCcEEEECcEEEEEEcCCCcEEEEEEEECC-CCcEEEEEc
Confidence 888888999999999988765 1 2344556665 69999999999999886444 346666533 355578999
Q ss_pred CEEEEccCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEEecccCCCC-CcHHHHHHHHHHHHHHhh
Q psy14927 1000 DALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGP-MLAHKAEDEGIVCVEGIA 1071 (1074)
Q Consensus 1000 D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~~~~-~~~~~A~~~G~~aA~~I~ 1071 (1074)
|.|++++|++|+++++ ... ++++++|+|.||++++|++|||||+|||++.+ +++..|+.+|..||.++.
T Consensus 439 D~v~~~~G~~p~~~~l--~~~-v~~~~~g~i~vd~~l~Ts~p~IyAaGDv~~~~~k~~~~A~~eG~~Aa~~~~ 508 (517)
T PRK15317 439 EGVFVQIGLVPNTEWL--KGT-VELNRRGEIIVDARGATSVPGVFAAGDCTTVPYKQIIIAMGEGAKAALSAF 508 (517)
T ss_pred CEEEEeECCccCchHH--hhh-eeeCCCCcEEECcCCCCCCCCEEECccccCCCCCEEEEhhhhHHHHHHHHH
Confidence 9999999999999984 444 78888999999999999999999999999864 678999999999999876
No 57
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=99.92 E-value=1.1e-24 Score=273.41 Aligned_cols=261 Identities=22% Similarity=0.180 Sum_probs=187.3
Q ss_pred chhhhhhccccchHHHHHHHhh-----hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEeeeEEEec
Q psy14927 794 RQVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITG 868 (1074)
Q Consensus 794 k~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~v~~id 868 (1074)
.++|+||||||||++||.+|++ ++|++.+..|+.+.+. ++.++ ....+.....+.+.+.||+|+.++.+.
T Consensus 431 ~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~g-ip~~r--lp~~~~~~~~~~l~~~gv~~~~~~~v~-- 505 (752)
T PRK12778 431 GKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLKYG-IPEFR--LPKKIVDVEIENLKKLGVKFETDVIVG-- 505 (752)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeec-CCCCC--CCHHHHHHHHHHHHHCCCEEECCCEEC--
Confidence 5569999999999999999999 8999988888877653 22221 113344555677788899999986431
Q ss_pred CCeEEEEeCCCCeeEEEcCeEEEccCCC-CCCCCCCCC-CCcceechhhHhcc------------------hH-------
Q psy14927 869 PNTVTVIKSDGSTEEVKTKNILIATGSE-VTPFPGIEV-DEETIVSSTGALSL------------------KK------- 921 (1074)
Q Consensus 869 ~~~~~v~~~~G~~~~i~~d~lIIATG~~-p~~ipgi~~-~~~~v~t~~~~~~~------------------~~------- 921 (1074)
..+++++. ....||+||||||+. |+. +++++ +...+++..+++.. +.
T Consensus 506 ---~~v~~~~l--~~~~ydavvlAtGa~~~~~-l~ipG~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG 579 (752)
T PRK12778 506 ---KTITIEEL--EEEGFKGIFIASGAGLPNF-MNIPGENSNGVMSSNEYLTRVNLMDAASPDSDTPIKFGKKVAVVGGG 579 (752)
T ss_pred ---CcCCHHHH--hhcCCCEEEEeCCCCCCCC-CCCCCCCCCCcEEHHHHHHHHhhcccccccccCcccCCCcEEEECCc
Confidence 12333332 346799999999994 532 22333 23456666655421 11
Q ss_pred ------hhHHhhcCCc-EEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCe--EEEEEeec----
Q psy14927 922 ------GSVWGRLGAE-VTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDN--ITVTIENV---- 988 (1074)
Q Consensus 922 ------A~~l~~~G~~-Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~--~~v~~~~~---- 988 (1074)
|..+.++|.+ ||++++++...++....++ +.+++.||++++++.+.++..++++ ..|++...
T Consensus 580 ~~a~d~A~~~~r~Ga~~Vtlv~r~~~~~~~~~~~e~-----~~~~~~GV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~ 654 (752)
T PRK12778 580 NTAMDSARTAKRLGAERVTIVYRRSEEEMPARLEEV-----KHAKEEGIEFLTLHNPIEYLADEKGWVKQVVLQKMELGE 654 (752)
T ss_pred HHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHH-----HHHHHcCCEEEecCcceEEEECCCCEEEEEEEEEEEecC
Confidence 7788889987 9999987653323332222 4567889999999999999764433 23443210
Q ss_pred ---c-------CCCCceEEEcCEEEEccCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEEecccCCCCCcHHH
Q psy14927 989 ---K-------DPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGPMLAHK 1058 (1074)
Q Consensus 989 ---~-------~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~~~~~~~~~ 1058 (1074)
+ .+|+..++++|.||+|+|++|++.++ ....|++++++|+|.||++++|+.|||||+|||++++.++..
T Consensus 655 ~~~~G~~~~~~~~g~~~~i~~D~Vi~A~G~~p~~~l~-~~~~gl~~~~~G~i~vd~~~~Ts~~gVfA~GD~~~g~~~vv~ 733 (752)
T PRK12778 655 PDASGRRRPVAIPGSTFTVDVDLVIVSVGVSPNPLVP-SSIPGLELNRKGTIVVDEEMQSSIPGIYAGGDIVRGGATVIL 733 (752)
T ss_pred cCCCCCCCceecCCCeEEEECCEEEECcCCCCCcccc-ccccCceECCCCCEEeCCCCCCCCCCEEEeCCccCCcHHHHH
Confidence 0 01344679999999999999998763 223478899999999999999999999999999998888999
Q ss_pred HHHHHHHHHHHhh
Q psy14927 1059 AEDEGIVCVEGIA 1071 (1074)
Q Consensus 1059 A~~~G~~aA~~I~ 1071 (1074)
|+.+|+.||.+|.
T Consensus 734 Av~~G~~AA~~I~ 746 (752)
T PRK12778 734 AMGDGKRAAAAID 746 (752)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999985
No 58
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=99.92 E-value=1.8e-24 Score=272.65 Aligned_cols=261 Identities=16% Similarity=0.137 Sum_probs=190.6
Q ss_pred chhhhhhccccchHHHHHHHhh-----hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEeeeEEEec
Q psy14927 794 RQVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITG 868 (1074)
Q Consensus 794 k~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~v~~id 868 (1074)
.++|+|||||||||+||.+|++ ++||+.+..||.+.+. ++.++ ...++.....+.+...||+|+.|+...
T Consensus 306 gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~yG-IP~~r--lp~~vi~~~i~~l~~~Gv~f~~n~~vG-- 380 (944)
T PRK12779 306 KPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLRYG-IPEFR--LPNQLIDDVVEKIKLLGGRFVKNFVVG-- 380 (944)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEEcc-CCCCc--ChHHHHHHHHHHHHhhcCeEEEeEEec--
Confidence 4559999999999999999999 8999999999988765 33332 235666667788888999999996442
Q ss_pred CCeEEEEeCCCCeeEEEcCeEEEccCCC-CCCCCCCCC-CCcceechhhHhcc--------------------hH-----
Q psy14927 869 PNTVTVIKSDGSTEEVKTKNILIATGSE-VTPFPGIEV-DEETIVSSTGALSL--------------------KK----- 921 (1074)
Q Consensus 869 ~~~~~v~~~~G~~~~i~~d~lIIATG~~-p~~ipgi~~-~~~~v~t~~~~~~~--------------------~~----- 921 (1074)
..+++++. ....||+||||||+. |+. +++++ +..++++..+++.. +.
T Consensus 381 ---~dit~~~l--~~~~yDAV~LAtGA~~pr~-l~IpG~dl~GV~~a~dfL~~~~~~~~~~~~~~~~~~~~~Gk~VvVIG 454 (944)
T PRK12779 381 ---KTATLEDL--KAAGFWKIFVGTGAGLPTF-MNVPGEHLLGVMSANEFLTRVNLMRGLDDDYETPLPEVKGKEVFVIG 454 (944)
T ss_pred ---cEEeHHHh--ccccCCEEEEeCCCCCCCc-CCCCCCcCcCcEEHHHHHHHHHhhccccccccccccccCCCEEEEEC
Confidence 23444444 345799999999996 532 23333 23456666655421 11
Q ss_pred --------hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCC--eE-EEEEe----
Q psy14927 922 --------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGD--NI-TVTIE---- 986 (1074)
Q Consensus 922 --------A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~--~~-~v~~~---- 986 (1074)
|..+.++|.+||++++++...+|....+ +.. ..+.||++++++.+++|.++++ .+ .+.+.
T Consensus 455 GG~tA~D~A~ta~R~Ga~Vtlv~rr~~~~mpa~~~e----~~~-a~eeGV~~~~~~~p~~i~~d~~~~~V~~v~~~~~~l 529 (944)
T PRK12779 455 GGNTAMDAARTAKRLGGNVTIVYRRTKSEMPARVEE----LHH-ALEEGINLAVLRAPREFIGDDHTHFVTHALLDVNEL 529 (944)
T ss_pred CCHHHHHHHHHHHHcCCEEEEEEecCcccccccHHH----HHH-HHHCCCEEEeCcceEEEEecCCCCEEEEEEEEEEEe
Confidence 7788889999999998864332333222 222 3467999999999999986532 22 22221
Q ss_pred -e--cc------CCCCceEEEcCEEEEccCCcccCCccCccccCcccCCCCCeeeCC-CCCCCCCCEEEecccCCCCCcH
Q psy14927 987 -N--VK------DPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNS-RFQTVIPNIFAIGDCIHGPMLA 1056 (1074)
Q Consensus 987 -~--~~------~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~-~~~ts~~~IyAiGD~~~~~~~~ 1056 (1074)
. .+ .+|+..++++|.||+|+|+.|++.+. ....|++++++|.|.||+ +++||.|||||+|||+.++.++
T Consensus 530 ~~~d~~Gr~~~~~~G~e~~i~aD~VI~AiG~~p~~~l~-~~~~gle~~~~G~I~vd~~~~~Ts~pgVFAaGD~~~G~~~v 608 (944)
T PRK12779 530 GEPDKSGRRSPKPTGEIERVPVDLVIMALGNTANPIMK-DAEPGLKTNKWGTIEVEKGSQRTSIKGVYSGGDAARGGSTA 608 (944)
T ss_pred ccccCcCceeeecCCceEEEECCEEEEcCCcCCChhhh-hcccCceECCCCCEEECCCCCccCCCCEEEEEcCCCChHHH
Confidence 0 00 02445689999999999999997642 345688899999999996 5899999999999999998899
Q ss_pred HHHHHHHHHHHHHhh
Q psy14927 1057 HKAEDEGIVCVEGIA 1071 (1074)
Q Consensus 1057 ~~A~~~G~~aA~~I~ 1071 (1074)
..|+.+|+.||.+|.
T Consensus 609 v~Ai~eGr~AA~~I~ 623 (944)
T PRK12779 609 IRAAGDGQAAAKEIV 623 (944)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999986
No 59
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=99.92 E-value=3e-24 Score=255.44 Aligned_cols=259 Identities=18% Similarity=0.155 Sum_probs=186.4
Q ss_pred chhhhhhccccchHHHHHHHhh-----hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEeeeEEEec
Q psy14927 794 RQVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITG 868 (1074)
Q Consensus 794 k~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~v~~id 868 (1074)
.++|+||||||+|+++|..|++ +++++.+..|+.+.+. ++... ...++.....+.+...||+|+.++.+.
T Consensus 140 ~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l~~g-ip~~~--~~~~~~~~~~~~l~~~gv~~~~~~~v~-- 214 (457)
T PRK11749 140 GKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLRYG-IPEFR--LPKDIVDREVERLLKLGVEIRTNTEVG-- 214 (457)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEeecc-CCCcc--CCHHHHHHHHHHHHHcCCEEEeCCEEC--
Confidence 4569999999999999999998 7899888887766542 22211 123455556677888899999996541
Q ss_pred CCeEEEEeCCCCeeEEEcCeEEEccCCC-CC--CCCCCCCCCcceechhhHhcc-------------hH-----------
Q psy14927 869 PNTVTVIKSDGSTEEVKTKNILIATGSE-VT--PFPGIEVDEETIVSSTGALSL-------------KK----------- 921 (1074)
Q Consensus 869 ~~~~~v~~~~G~~~~i~~d~lIIATG~~-p~--~ipgi~~~~~~v~t~~~~~~~-------------~~----------- 921 (1074)
..++++++ .+.||+||||||+. |. ++||.. ...+++..+++.. +.
T Consensus 215 ---~~v~~~~~---~~~~d~vvlAtGa~~~~~~~i~G~~--~~gv~~~~~~l~~~~~~~~~~~~~~g~~VvViGgG~~g~ 286 (457)
T PRK11749 215 ---RDITLDEL---RAGYDAVFIGTGAGLPRFLGIPGEN--LGGVYSAVDFLTRVNQAVADYDLPVGKRVVVIGGGNTAM 286 (457)
T ss_pred ---CccCHHHH---HhhCCEEEEccCCCCCCCCCCCCcc--CCCcEEHHHHHHHHhhccccccCCCCCeEEEECCCHHHH
Confidence 12222332 37899999999996 43 334432 2345544333221 11
Q ss_pred --hhHHhhcCC-cEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCe-EEEEEeec-------c-
Q psy14927 922 --GSVWGRLGA-EVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDN-ITVTIENV-------K- 989 (1074)
Q Consensus 922 --A~~l~~~G~-~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~-~~v~~~~~-------~- 989 (1074)
|..+.+.|. +||++++++...++.... ..+.+++.||++++++.+.++.+++++ ..|++... +
T Consensus 287 e~A~~l~~~G~~~Vtlv~~~~~~~~~~~~~-----~~~~~~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~g 361 (457)
T PRK11749 287 DAARTAKRLGAESVTIVYRRGREEMPASEE-----EVEHAKEEGVEFEWLAAPVEILGDEGRVTGVEFVRMELGEPDASG 361 (457)
T ss_pred HHHHHHHHcCCCeEEEeeecCcccCCCCHH-----HHHHHHHCCCEEEecCCcEEEEecCCceEEEEEEEEEecCcCCCC
Confidence 777888887 899999876533233322 246678899999999999999876543 22333211 0
Q ss_pred -----CCCCceEEEcCEEEEccCCcccCCccCccccCcccCCCCCeeeCC-CCCCCCCCEEEecccCCCCCcHHHHHHHH
Q psy14927 990 -----DPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNS-RFQTVIPNIFAIGDCIHGPMLAHKAEDEG 1063 (1074)
Q Consensus 990 -----~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~-~~~ts~~~IyAiGD~~~~~~~~~~A~~~G 1063 (1074)
.++++.++++|.||+++|++|++.++ ....++.++++|+|.||+ +++|++|+|||+|||+.+++++..|+.+|
T Consensus 362 ~~~~~~~g~~~~i~~D~vi~a~G~~p~~~l~-~~~~gl~~~~~g~i~vd~~~~~Ts~~~VfA~GD~~~~~~~~~~A~~~G 440 (457)
T PRK11749 362 RRRVPIEGSEFTLPADLVIKAIGQTPNPLIL-STTPGLELNRWGTIIADDETGRTSLPGVFAGGDIVTGAATVVWAVGDG 440 (457)
T ss_pred CcccCCCCceEEEECCEEEECccCCCCchhh-ccccCccCCCCCCEEeCCCCCccCCCCEEEeCCcCCCchHHHHHHHHH
Confidence 02345689999999999999998763 345678889999999998 88999999999999998878899999999
Q ss_pred HHHHHHhh
Q psy14927 1064 IVCVEGIA 1071 (1074)
Q Consensus 1064 ~~aA~~I~ 1071 (1074)
+.||.+|.
T Consensus 441 ~~aA~~I~ 448 (457)
T PRK11749 441 KDAAEAIH 448 (457)
T ss_pred HHHHHHHH
Confidence 99999986
No 60
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=99.92 E-value=3.5e-24 Score=263.62 Aligned_cols=260 Identities=18% Similarity=0.191 Sum_probs=187.0
Q ss_pred chhhhhhccccchHHHHHHHhh-----hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEeeeEEEec
Q psy14927 794 RQVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITG 868 (1074)
Q Consensus 794 k~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~v~~id 868 (1074)
.++|+||||||+|+++|..|++ ++|++.+..||.+.+. ++.+. ....+.....+.+...||+++.+++..++
T Consensus 193 ~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~~g-ip~~~--~~~~~~~~~~~~l~~~Gv~i~~~~~v~~d 269 (652)
T PRK12814 193 GKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMRYG-IPRFR--LPESVIDADIAPLRAMGAEFRFNTVFGRD 269 (652)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeec-CCCCC--CCHHHHHHHHHHHHHcCCEEEeCCcccCc
Confidence 5569999999999999999999 8999988888877653 22221 22444555667778889999999654322
Q ss_pred CCeEEEEeCCCCeeEEEcCeEEEccCCCCCCCCCCCC-CCcceechhhHhcc---------hH--------------hhH
Q psy14927 869 PNTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGIEV-DEETIVSSTGALSL---------KK--------------GSV 924 (1074)
Q Consensus 869 ~~~~~v~~~~G~~~~i~~d~lIIATG~~p~~ipgi~~-~~~~v~t~~~~~~~---------~~--------------A~~ 924 (1074)
+++.+. ...||+||||||+++...+++++ +...+++..+++.. .+ |..
T Consensus 270 -----v~~~~~---~~~~DaVilAtGa~~~~~~~ipG~~~~gv~~~~~~l~~~~~~~~~~~gk~VvVIGgG~~a~e~A~~ 341 (652)
T PRK12814 270 -----ITLEEL---QKEFDAVLLAVGAQKASKMGIPGEELPGVISGIDFLRNVALGTALHPGKKVVVIGGGNTAIDAART 341 (652)
T ss_pred -----cCHHHH---HhhcCEEEEEcCCCCCCCCCCCCcCcCCcEeHHHHHHHhhcCCcccCCCeEEEECCCHHHHHHHHH
Confidence 222222 23599999999998632223332 23345655554431 01 777
Q ss_pred HhhcCC-cEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEE---Eeec----c-------
Q psy14927 925 WGRLGA-EVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVT---IENV----K------- 989 (1074)
Q Consensus 925 l~~~G~-~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~---~~~~----~------- 989 (1074)
+.++|. +||++++++...++..+.++ .+. .+.||+|++++.+.+|.++++++.++ +... +
T Consensus 342 l~~~Ga~~Vtlv~r~~~~~mpa~~~ei----~~a-~~eGV~i~~~~~~~~i~~~~~~~~v~~~~~~~~~~d~~G~~~~~~ 416 (652)
T PRK12814 342 ALRLGAESVTILYRRTREEMPANRAEI----EEA-LAEGVSLRELAAPVSIERSEGGLELTAIKMQQGEPDESGRRRPVP 416 (652)
T ss_pred HHHcCCCeEEEeeecCcccCCCCHHHH----HHH-HHcCCcEEeccCcEEEEecCCeEEEEEEEEEecccCCCCCCccee
Confidence 778886 69999988753324444333 222 35799999999999998765554332 2210 0
Q ss_pred CCCCceEEEcCEEEEccCCcccCCccCccccCcccCCCCCeeeCC-CCCCCCCCEEEecccCCCCCcHHHHHHHHHHHHH
Q psy14927 990 DPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNS-RFQTVIPNIFAIGDCIHGPMLAHKAEDEGIVCVE 1068 (1074)
Q Consensus 990 ~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~-~~~ts~~~IyAiGD~~~~~~~~~~A~~~G~~aA~ 1068 (1074)
.+|+..++++|.||+++|+.|++++ +...|++++.+|+|.||+ +++|+.|||||+||++.++.++..|+.+|+.||.
T Consensus 417 ~~g~~~~i~~D~VI~AiG~~p~~~l--l~~~gl~~~~~G~I~vd~~~~~Ts~pgVfA~GDv~~g~~~v~~Ai~~G~~AA~ 494 (652)
T PRK12814 417 VEGSEFTLQADTVISAIGQQVDPPI--AEAAGIGTSRNGTVKVDPETLQTSVAGVFAGGDCVTGADIAINAVEQGKRAAH 494 (652)
T ss_pred cCCceEEEECCEEEECCCCcCCccc--ccccCccccCCCcEeeCCCCCcCCCCCEEEcCCcCCCchHHHHHHHHHHHHHH
Confidence 0133457999999999999999987 567889999899999996 6889999999999999988889999999999999
Q ss_pred Hhh
Q psy14927 1069 GIA 1071 (1074)
Q Consensus 1069 ~I~ 1071 (1074)
+|.
T Consensus 495 ~I~ 497 (652)
T PRK12814 495 AID 497 (652)
T ss_pred HHH
Confidence 985
No 61
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=99.92 E-value=3.7e-24 Score=259.44 Aligned_cols=263 Identities=19% Similarity=0.222 Sum_probs=182.4
Q ss_pred hhhhhhccccchHHHHHHHhh-----hhhhhccccccccchh----hhhhhhhHHHhhhhhhHHHHhhhCCeEEEeeeEE
Q psy14927 795 QVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLE----TMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGK 865 (1074)
Q Consensus 795 ~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~----~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~v~ 865 (1074)
.+|+||||||||++||+++++ +++|+. ..||.+... .++.........+...+...+...|++++.++|+
T Consensus 5 yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~-~~GG~~~~~~~i~~~pg~~~~~~~~l~~~l~~~~~~~gv~~~~~~V~ 83 (555)
T TIGR03143 5 YDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKD-DFGGQITITSEVVNYPGILNTTGPELMQEMRQQAQDFGVKFLQAEVL 83 (555)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEecC-CCCceEEeccccccCCCCcCCCHHHHHHHHHHHHHHcCCEEeccEEE
Confidence 359999999999999999998 788875 455554321 1111111112345566777788889999888888
Q ss_pred EecCCe--EEEEeCCCCeeEEEcCeEEEccCCCCC--CCCCCCC-CCccee---chhh-HhcchH-------------hh
Q psy14927 866 ITGPNT--VTVIKSDGSTEEVKTKNILIATGSEVT--PFPGIEV-DEETIV---SSTG-ALSLKK-------------GS 923 (1074)
Q Consensus 866 ~id~~~--~~v~~~~G~~~~i~~d~lIIATG~~p~--~ipgi~~-~~~~v~---t~~~-~~~~~~-------------A~ 923 (1074)
.++... +.+.+.+| ++.+++||||||++|. ++||... ....+. +++. ...... |.
T Consensus 84 ~i~~~~~~~~V~~~~g---~~~a~~lVlATGa~p~~~~ipG~~~~~~~~v~~~~~~~~~~~~g~~VvVIGgG~~g~E~A~ 160 (555)
T TIGR03143 84 DVDFDGDIKTIKTARG---DYKTLAVLIATGASPRKLGFPGEEEFTGRGVAYCATCDGEFFTGMDVFVIGGGFAAAEEAV 160 (555)
T ss_pred EEEecCCEEEEEecCC---EEEEeEEEECCCCccCCCCCCCHHHhCCceEEEEeecChhhcCCCEEEEECCCHHHHHHHH
Confidence 887543 45666555 5899999999999984 3444311 011121 2221 111111 77
Q ss_pred HHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEEeeccCCCCceEE--EcCE
Q psy14927 924 VWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEEL--SCDA 1001 (1074)
Q Consensus 924 ~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i--~~D~ 1001 (1074)
.|.+.|++||++++.+.+. ..+.. ..+.+...||++++++.|+++.+++....+.+.+.. +|+..++ ++|.
T Consensus 161 ~L~~~g~~Vtli~~~~~~~---~~~~~---~~~~~~~~gV~i~~~~~V~~i~~~~~v~~v~~~~~~-~G~~~~~~~~~D~ 233 (555)
T TIGR03143 161 FLTRYASKVTVIVREPDFT---CAKLI---AEKVKNHPKIEVKFNTELKEATGDDGLRYAKFVNNV-TGEITEYKAPKDA 233 (555)
T ss_pred HHHccCCEEEEEEeCCccc---cCHHH---HHHHHhCCCcEEEeCCEEEEEEcCCcEEEEEEEECC-CCCEEEEeccccc
Confidence 7888999999999988664 12222 223345579999999999999875433334444322 3444443 4776
Q ss_pred ----EEEccCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEEecccCC-CCCcHHHHHHHHHHHHHHhh
Q psy14927 1002 ----LLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIH-GPMLAHKAEDEGIVCVEGIA 1071 (1074)
Q Consensus 1002 ----vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~~-~~~~~~~A~~~G~~aA~~I~ 1071 (1074)
||+++|++|++.++ . .+++++++|+|.||++++|++|||||+|||+. .+..+..|+.+|+.||.+|.
T Consensus 234 ~~~~Vi~a~G~~Pn~~l~--~-~~l~l~~~G~I~vd~~~~Ts~p~IyAaGDv~~~~~~~v~~A~~~G~~Aa~~i~ 305 (555)
T TIGR03143 234 GTFGVFVFVGYAPSSELF--K-GVVELDKRGYIPTNEDMETNVPGVYAAGDLRPKELRQVVTAVADGAIAATSAE 305 (555)
T ss_pred cceEEEEEeCCCCChhHH--h-hhcccCCCCeEEeCCccccCCCCEEEceeccCCCcchheeHHhhHHHHHHHHH
Confidence 99999999999973 3 35788889999999999999999999999975 34567889999999999985
No 62
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=99.91 E-value=3.7e-24 Score=247.62 Aligned_cols=265 Identities=19% Similarity=0.266 Sum_probs=214.2
Q ss_pred hhhhhhccccchHHHHHHHhh--------hhhhhcccccc-ccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEee-eE
Q psy14927 795 QVVLNTLGNCAAVQANYHLAT--------KLFTQAGDKGV-KLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNG-HG 864 (1074)
Q Consensus 795 ~~VviiGgG~AGl~aA~~la~--------~l~e~~~~~g~-~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g-~v 864 (1074)
.++||||.|++|..+.-++.. |+|...++... .+.+..+.+.... .+++...-.+++.++||+++.| .|
T Consensus 4 ~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~nY~Ri~Ls~vl~~~~~-~edi~l~~~dwy~~~~i~L~~~~~v 82 (793)
T COG1251 4 QKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPNYNRILLSSVLAGEKT-AEDISLNRNDWYEENGITLYTGEKV 82 (793)
T ss_pred eeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCccccceeeccccCCCcc-HHHHhccchhhHHHcCcEEEcCCee
Confidence 348999999999988888777 55555543322 3334444444333 3666666778899999999999 69
Q ss_pred EEecCCeEEEEeCCCCeeEEEcCeEEEccCCCCCCCCCCCC-CCccee---chhhHhcchH-------------------
Q psy14927 865 KITGPNTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGIEV-DEETIV---SSTGALSLKK------------------- 921 (1074)
Q Consensus 865 ~~id~~~~~v~~~~G~~~~i~~d~lIIATG~~p~~ipgi~~-~~~~v~---t~~~~~~~~~------------------- 921 (1074)
+++|+....|+++.| .++.||.|||||||.|..+| +|+ +...++ +.++......
T Consensus 83 ~~idr~~k~V~t~~g--~~~~YDkLilATGS~pfi~P-iPG~~~~~v~~~R~i~D~~am~~~ar~~~~avVIGGGLLGlE 159 (793)
T COG1251 83 IQIDRANKVVTTDAG--RTVSYDKLIIATGSYPFILP-IPGSDLPGVFVYRTIDDVEAMLDCARNKKKAVVIGGGLLGLE 159 (793)
T ss_pred EEeccCcceEEccCC--cEeecceeEEecCccccccC-CCCCCCCCeeEEecHHHHHHHHHHHhccCCcEEEccchhhhH
Confidence 999999999999999 88999999999999996444 332 223344 4444433322
Q ss_pred -hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEEeeccCCCCceEEEcC
Q psy14927 922 -GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCD 1000 (1074)
Q Consensus 922 -A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D 1000 (1074)
|..|...|.+|++++..+.++-..+++.-...+...+++.||+++++....++.+.+....+.+.+ +..+++|
T Consensus 160 aA~~L~~~Gm~~~Vvh~~~~lMerQLD~~ag~lL~~~le~~Gi~~~l~~~t~ei~g~~~~~~vr~~D------G~~i~ad 233 (793)
T COG1251 160 AARGLKDLGMEVTVVHIAPTLMERQLDRTAGRLLRRKLEDLGIKVLLEKNTEEIVGEDKVEGVRFAD------GTEIPAD 233 (793)
T ss_pred HHHHHHhCCCceEEEeecchHHHHhhhhHHHHHHHHHHHhhcceeecccchhhhhcCcceeeEeecC------CCcccce
Confidence 778888999999999999998788999999999999999999999999999888855556777777 5689999
Q ss_pred EEEEccCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEEecccCCC----CCcHHHHHHHHHHHHHHhhCC
Q psy14927 1001 ALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHG----PMLAHKAEDEGIVCVEGIAGD 1073 (1074)
Q Consensus 1001 ~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~~~----~~~~~~A~~~G~~aA~~I~~~ 1073 (1074)
.|++++|.+||+++ ...+|+.+++ .|.||+++|||.|+|||+|+|+.. ..++.-+..|++++|+++++.
T Consensus 234 ~VV~a~GIrPn~el--a~~aGlavnr--GIvvnd~mqTsdpdIYAvGEcae~~g~~yGLVaP~yeq~~v~a~hl~~~ 306 (793)
T COG1251 234 LVVMAVGIRPNDEL--AKEAGLAVNR--GIVVNDYMQTSDPDIYAVGECAEHRGKVYGLVAPLYEQAKVLADHLCGG 306 (793)
T ss_pred eEEEecccccccHh--HHhcCcCcCC--CeeecccccccCCCeeehhhHHHhcCccceehhHHHHHHHHHHHHhccC
Confidence 99999999999998 7889999987 599999999999999999999863 446788999999999999874
No 63
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=99.91 E-value=1.4e-23 Score=249.02 Aligned_cols=259 Identities=21% Similarity=0.206 Sum_probs=184.1
Q ss_pred chhhhhhccccchHHHHHHHhh-----hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEeeeEEEec
Q psy14927 794 RQVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITG 868 (1074)
Q Consensus 794 k~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~v~~id 868 (1074)
.++|+||||||+|+++|..|++ ++|++.+..||.+.+. ++.+.. ..++.....+.+...||+++.++...
T Consensus 141 ~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~g-ip~~~~--~~~~~~~~~~~~~~~Gv~~~~~~~v~-- 215 (467)
T TIGR01318 141 GKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTFG-IPSFKL--DKAVLSRRREIFTAMGIEFHLNCEVG-- 215 (467)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeeec-CccccC--CHHHHHHHHHHHHHCCCEEECCCEeC--
Confidence 5569999999999999999998 7899998888877653 333221 24455556678888999999985321
Q ss_pred CCeEEEEeCCCCeeEEEcCeEEEccCCCCC---CCCCCCCCCcceechhhHh---------------------cchH---
Q psy14927 869 PNTVTVIKSDGSTEEVKTKNILIATGSEVT---PFPGIEVDEETIVSSTGAL---------------------SLKK--- 921 (1074)
Q Consensus 869 ~~~~~v~~~~G~~~~i~~d~lIIATG~~p~---~ipgi~~~~~~v~t~~~~~---------------------~~~~--- 921 (1074)
. .+.+++ ....||.||+|||+.+. ++||... ..+++..+++ ..++
T Consensus 216 ~---~~~~~~---~~~~~D~vilAtGa~~~~~~~i~g~~~--~gV~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvV 287 (467)
T TIGR01318 216 R---DISLDD---LLEDYDAVFLGVGTYRSMRGGLPGEDA--PGVLQALPFLIANTRQLMGLPESPEEPLIDVEGKRVVV 287 (467)
T ss_pred C---ccCHHH---HHhcCCEEEEEeCCCCCCcCCCCCcCC--CCcEEHHHHHHHHHHHhcCCCccccccccccCCCEEEE
Confidence 1 111111 12469999999999863 4555432 2344322111 0011
Q ss_pred ----------hhHHhhcCC-cEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCe--EEEEEeec
Q psy14927 922 ----------GSVWGRLGA-EVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDN--ITVTIENV 988 (1074)
Q Consensus 922 ----------A~~l~~~G~-~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~--~~v~~~~~ 988 (1074)
|..+.++|. +||++++++...++..+.++ +.+.+.||++++++.+.++..++++ ..|++...
T Consensus 288 IGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~~~~~~~~~~e~-----~~~~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~ 362 (467)
T TIGR01318 288 LGGGDTAMDCVRTAIRLGAASVTCAYRRDEANMPGSRREV-----ANAREEGVEFLFNVQPVYIECDEDGRVTGVGLVRT 362 (467)
T ss_pred ECCcHHHHHHHHHHHHcCCCeEEEEEecCcccCCCCHHHH-----HHHHhcCCEEEecCCcEEEEECCCCeEEEEEEEEE
Confidence 566677885 79999998765434444333 4567889999999999999764332 22333210
Q ss_pred -------c-------CCCCceEEEcCEEEEccCCcccCCccCccccCcccCCCCCeeeC----CCCCCCCCCEEEecccC
Q psy14927 989 -------K-------DPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVN----SRFQTVIPNIFAIGDCI 1050 (1074)
Q Consensus 989 -------~-------~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd----~~~~ts~~~IyAiGD~~ 1050 (1074)
+ .+|+..++++|.||+++|++|+...+ +...+++++++|+|.|| .+++|+.|+||++|||+
T Consensus 363 ~~~~~~~~g~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~~~-~~~~gl~~~~~g~i~vd~~~~~~~~T~~~gVfa~GD~~ 441 (467)
T TIGR01318 363 ALGEPDADGRRRPVPVAGSEFVLPADVVIMAFGFQPHAMPW-LAGHGITLDSWGRIITGDVSYLPYQTTNPKIFAGGDAV 441 (467)
T ss_pred EecccCCCCCccceecCCceEEEECCEEEECCcCCCCcccc-ccccCccCCCCCCEEeCCccccCccCCCCCEEEECCcC
Confidence 0 01345689999999999999986432 56778899999999999 67899999999999999
Q ss_pred CCCCcHHHHHHHHHHHHHHhh
Q psy14927 1051 HGPMLAHKAEDEGIVCVEGIA 1071 (1074)
Q Consensus 1051 ~~~~~~~~A~~~G~~aA~~I~ 1071 (1074)
+++.++..|+.+|+.||.+|.
T Consensus 442 ~~~~~~~~Ai~~G~~aA~~i~ 462 (467)
T TIGR01318 442 RGADLVVTAVAEGRQAAQGIL 462 (467)
T ss_pred CCccHHHHHHHHHHHHHHHHH
Confidence 988888999999999999986
No 64
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=99.91 E-value=1.9e-23 Score=240.17 Aligned_cols=267 Identities=21% Similarity=0.168 Sum_probs=180.7
Q ss_pred chhhhhhccccchHHHHHHHhh-----hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEeeeEEEec
Q psy14927 794 RQVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITG 868 (1074)
Q Consensus 794 k~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~v~~id 868 (1074)
.++|+||||||+|+++|..+++ +++++.+..++.+... .+.... ..+.+. ...+.+.+.||+++.++....+
T Consensus 18 ~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~-~~~~~~-~~~~~~-~~~~~l~~~~i~~~~~~~v~~~ 94 (352)
T PRK12770 18 GKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLMLFG-IPEFRI-PIERVR-EGVKELEEAGVVFHTRTKVCCG 94 (352)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeeec-Cccccc-CHHHHH-HHHHHHHhCCeEEecCcEEeec
Confidence 3459999999999999999998 7899888877765332 111110 112222 2334455669999999544322
Q ss_pred CC-------eEEEEeCCCCeeEEEcCeEEEccCCC-CC--CCCCCCCCCcceechhhHh--------------c-----c
Q psy14927 869 PN-------TVTVIKSDGSTEEVKTKNILIATGSE-VT--PFPGIEVDEETIVSSTGAL--------------S-----L 919 (1074)
Q Consensus 869 ~~-------~~~v~~~~G~~~~i~~d~lIIATG~~-p~--~ipgi~~~~~~v~t~~~~~--------------~-----~ 919 (1074)
.. .+.......+...+.||+||||||+. |. ++||. +...+++..+.. . .
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtGs~~~~~~~ipg~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~g 172 (352)
T PRK12770 95 EPLHEEEGDEFVERIVSLEELVKKYDAVLIATGTWKSRKLGIPGE--DLPGVYSALEYLFRIRAAKLGYLPWEKVPPVEG 172 (352)
T ss_pred cccccccccccccccCCHHHHHhhCCEEEEEeCCCCCCcCCCCCc--cccCceeHHHHHHHhhhccccccccccccccCC
Confidence 11 11111111111247899999999995 42 34443 223344432211 0 0
Q ss_pred hH-------------hhHHhhcCCc-EEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEE
Q psy14927 920 KK-------------GSVWGRLGAE-VTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTI 985 (1074)
Q Consensus 920 ~~-------------A~~l~~~G~~-Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~ 985 (1074)
.. |..+...|.+ ||++++.+... .... ....+.|+++||++++++.+.++++++....|++
T Consensus 173 ~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~~~~-~~~~----~~~~~~l~~~gi~i~~~~~v~~i~~~~~~~~v~~ 247 (352)
T PRK12770 173 KKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRTINE-APAG----KYEIERLIARGVEFLELVTPVRIIGEGRVEGVEL 247 (352)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecchhh-CCCC----HHHHHHHHHcCCEEeeccCceeeecCCcEeEEEE
Confidence 11 7777778987 99998876432 1111 2344668999999999999999987543334444
Q ss_pred eecc--------------CCCCceEEEcCEEEEccCCcccCCccCccc-cCcccCCCCCeeeCCCCCCCCCCEEEecccC
Q psy14927 986 ENVK--------------DPTKKEELSCDALLVCVGRRPYTHNLGLEE-IGIEKDEKGRVPVNSRFQTVIPNIFAIGDCI 1050 (1074)
Q Consensus 986 ~~~~--------------~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~-~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~ 1050 (1074)
.+.. .++++.++++|.||+++|++|++.+ ... .|+.++++|+|.||++++|+.|+||++|||+
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vi~a~G~~p~~~l--~~~~~g~~~~~~g~i~vd~~~~t~~~~vyaiGD~~ 325 (352)
T PRK12770 248 AKMRLGEPDESGRPRPVPIPGSEFVLEADTVVFAIGEIPTPPF--AKECLGIELNRKGEIVVDEKHMTSREGVFAAGDVV 325 (352)
T ss_pred EEEEecCcCcccCcCceecCCCeEEEECCEEEECcccCCCchh--hhcccCceecCCCcEeeCCCcccCCCCEEEEcccc
Confidence 3210 0245678999999999999999876 334 7888888999999999999999999999999
Q ss_pred CCCCcHHHHHHHHHHHHHHhhC
Q psy14927 1051 HGPMLAHKAEDEGIVCVEGIAG 1072 (1074)
Q Consensus 1051 ~~~~~~~~A~~~G~~aA~~I~~ 1072 (1074)
.+|..+..|+.+|+.||.+|..
T Consensus 326 ~~~~~~~~A~~~g~~aa~~i~~ 347 (352)
T PRK12770 326 TGPSKIGKAIKSGLRAAQSIHE 347 (352)
T ss_pred cCcchHHHHHHHHHHHHHHHHH
Confidence 9888999999999999999863
No 65
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=99.90 E-value=2.5e-23 Score=264.77 Aligned_cols=261 Identities=17% Similarity=0.163 Sum_probs=185.8
Q ss_pred chhhhhhccccchHHHHHHHhh-----hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEeeeEEEec
Q psy14927 794 RQVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITG 868 (1074)
Q Consensus 794 k~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~v~~id 868 (1074)
.++|+|||||||||+||.+|++ ++|++.+..|+.+.+. ++.+. ...++.....+.+.+.||+|+.|+++..+
T Consensus 430 ~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~~g-ip~~r--l~~e~~~~~~~~l~~~Gv~~~~~~~vg~~ 506 (1006)
T PRK12775 430 LGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQYG-IPSFR--LPRDIIDREVQRLVDIGVKIETNKVIGKT 506 (1006)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcceeecc-CCccC--CCHHHHHHHHHHHHHCCCEEEeCCccCCc
Confidence 4569999999999999999999 8999988888877653 33332 12456666778888899999999654221
Q ss_pred CCeEEEEeCCCCeeEEEcCeEEEccCCC-CC--CCCCCCCCCcceechhhHhcc------------------hH------
Q psy14927 869 PNTVTVIKSDGSTEEVKTKNILIATGSE-VT--PFPGIEVDEETIVSSTGALSL------------------KK------ 921 (1074)
Q Consensus 869 ~~~~~v~~~~G~~~~i~~d~lIIATG~~-p~--~ipgi~~~~~~v~t~~~~~~~------------------~~------ 921 (1074)
+++ ++- .....||+||||||+. |+ ++||. +...+++..+++.. .+
T Consensus 507 ---~~~--~~l-~~~~~yDaViIATGa~~pr~l~IpG~--~l~gV~~a~~fL~~~~~~~~~~~~~~~~~~~~Gk~VvVIG 578 (1006)
T PRK12775 507 ---FTV--PQL-MNDKGFDAVFLGVGAGAPTFLGIPGE--FAGQVYSANEFLTRVNLMGGDKFPFLDTPISLGKSVVVIG 578 (1006)
T ss_pred ---cCH--HHH-hhccCCCEEEEecCCCCCCCCCCCCc--CCCCcEEHHHHHHHHHhcCccccccccCCccCCCEEEEEC
Confidence 211 110 0024699999999995 43 34443 23456666655421 11
Q ss_pred --------hhHHhhcCC-cEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCe--EEEEEeec--
Q psy14927 922 --------GSVWGRLGA-EVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDN--ITVTIENV-- 988 (1074)
Q Consensus 922 --------A~~l~~~G~-~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~--~~v~~~~~-- 988 (1074)
|..+.++|. .|+++.++....++....+ .+.+++.||++++++.+.++..++++ ..|++...
T Consensus 579 gG~tA~D~A~~a~rlGa~~Vtiv~rr~~~em~a~~~e-----~~~a~eeGI~~~~~~~p~~i~~~~~G~v~~v~~~~~~l 653 (1006)
T PRK12775 579 AGNTAMDCLRVAKRLGAPTVRCVYRRSEAEAPARIEE-----IRHAKEEGIDFFFLHSPVEIYVDAEGSVRGMKVEEMEL 653 (1006)
T ss_pred CcHHHHHHHHHHHHcCCCEEEEEeecCcccCCCCHHH-----HHHHHhCCCEEEecCCcEEEEeCCCCeEEEEEEEEEEe
Confidence 667778887 5888887755443332222 24567889999999999999754332 23433210
Q ss_pred ---cC--------CCCceEEEcCEEEEccCCcccCCccCccccCcccCCCCCeeeCC-----CCCCCCCCEEEecccCCC
Q psy14927 989 ---KD--------PTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNS-----RFQTVIPNIFAIGDCIHG 1052 (1074)
Q Consensus 989 ---~~--------~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~-----~~~ts~~~IyAiGD~~~~ 1052 (1074)
+. +|+..++++|.||+++|+.|++.++ ....|+.++.+|.|.||+ +++||+|||||+||++.+
T Consensus 654 ~~~d~~Gr~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~-~~~~gl~l~~~G~I~vd~~~v~~~~~Ts~pgVFAaGDv~~G 732 (1006)
T PRK12775 654 GEPDEKGRRKPMPTGEFKDLECDTVIYALGTKANPIIT-QSTPGLALNKWGNIAADDGKLESTQSTNLPGVFAGGDIVTG 732 (1006)
T ss_pred cccCCCCCccccCCCceEEEEcCEEEECCCcCCChhhh-hccCCcccCCCCcEEeCCCccccCcCCCCCCEEEecCcCCC
Confidence 00 2334579999999999999998763 233478888899999996 789999999999999999
Q ss_pred CCcHHHHHHHHHHHHHHhh
Q psy14927 1053 PMLAHKAEDEGIVCVEGIA 1071 (1074)
Q Consensus 1053 ~~~~~~A~~~G~~aA~~I~ 1071 (1074)
+.++..|+.+|+.||.+|.
T Consensus 733 ~~~vv~Ai~~Gr~AA~~I~ 751 (1006)
T PRK12775 733 GATVILAMGAGRRAARSIA 751 (1006)
T ss_pred ccHHHHHHHHHHHHHHHHH
Confidence 9899999999999999985
No 66
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=99.90 E-value=4.5e-23 Score=243.85 Aligned_cols=253 Identities=19% Similarity=0.281 Sum_probs=183.0
Q ss_pred HHHHHhh-------hhhhhcccccccc-chhhhhhhhhHHHhhhhhh-HHHHhhhCCeEEEee-eEEEecCCeEEEEeCC
Q psy14927 809 ANYHLAT-------KLFTQAGDKGVKL-NLETMMGTKSAAVKALTGG-IAHLFKSNKVTQLNG-HGKITGPNTVTVIKSD 878 (1074)
Q Consensus 809 aA~~la~-------~l~e~~~~~g~~~-~~~~~~~~~~~~~~~l~~~-~~~~l~~~gV~~~~g-~v~~id~~~~~v~~~~ 878 (1074)
||.+|++ +++++.+.....+ .++.+..+.....+.+... ....+.+.||+++.+ +|+.+|+....+.+.+
T Consensus 2 aA~~l~~~~~~~~Vtlid~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~~id~~~~~v~~~~ 81 (427)
T TIGR03385 2 AASRVRRLDKESDIIVFEKTEDVSFANCGLPYVIGGVIDDRNKLLAYTPEVFIKKRGIDVKTNHEVIEVNDERQTVVVRN 81 (427)
T ss_pred HHHHHHhhCCCCcEEEEEcCCceeEEcCCCCeEeccccCCHHHcccCCHHHHHHhcCCeEEecCEEEEEECCCCEEEEEE
Confidence 5666665 6777777554433 2333322211111222222 344557889999866 7888987655555532
Q ss_pred C-CeeEEE--cCeEEEccCCCCC--CCCCCCCCCcceechh---hHhcc---------hH-------------hhHHhhc
Q psy14927 879 G-STEEVK--TKNILIATGSEVT--PFPGIEVDEETIVSST---GALSL---------KK-------------GSVWGRL 928 (1074)
Q Consensus 879 G-~~~~i~--~d~lIIATG~~p~--~ipgi~~~~~~v~t~~---~~~~~---------~~-------------A~~l~~~ 928 (1074)
+ ...++. ||+||||||++|. ++||++. ..+++.. +...+ +. |..|++.
T Consensus 82 ~~~~~~~~~~yd~lIiATG~~p~~~~i~G~~~--~~v~~~~~~~~~~~~~~~l~~~~~~~vvViGgG~~g~e~A~~l~~~ 159 (427)
T TIGR03385 82 NKTNETYEESYDYLILSPGASPIVPNIEGINL--DIVFTLRNLEDTDAIKQYIDKNKVENVVIIGGGYIGIEMAEALRER 159 (427)
T ss_pred CCCCCEEecCCCEEEECCCCCCCCCCCCCcCC--CCEEEECCHHHHHHHHHHHhhcCCCeEEEECCCHHHHHHHHHHHhC
Confidence 1 124567 9999999999984 3444321 3343322 22110 11 7788889
Q ss_pred CCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccCC
Q psy14927 929 GAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGR 1008 (1074)
Q Consensus 929 G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~ 1008 (1074)
|.+||++++++.++.+.+++++...+.+.|++.||++++++.+.++.+++. + +.+.+ +.++++|.||+++|+
T Consensus 160 g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~-~-v~~~~------g~~i~~D~vi~a~G~ 231 (427)
T TIGR03385 160 GKNVTLIHRSERILNKLFDEEMNQIVEEELKKHEINLRLNEEVDSIEGEER-V-KVFTS------GGVYQADMVILATGI 231 (427)
T ss_pred CCcEEEEECCcccCccccCHHHHHHHHHHHHHcCCEEEeCCEEEEEecCCC-E-EEEcC------CCEEEeCEEEECCCc
Confidence 999999999998854678899999999999999999999999999987543 2 33333 357999999999999
Q ss_pred cccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEEecccCCC----------CCcHHHHHHHHHHHHHHhhCC
Q psy14927 1009 RPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHG----------PMLAHKAEDEGIVCVEGIAGD 1073 (1074)
Q Consensus 1009 ~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~~~----------~~~~~~A~~~G~~aA~~I~~~ 1073 (1074)
+|++++ +..+|++++++|+|.||++++|+.|+|||+|||+.. ++++..|..||+++|+||+|.
T Consensus 232 ~p~~~~--l~~~gl~~~~~G~i~vd~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~~a~ni~g~ 304 (427)
T TIGR03385 232 KPNSEL--AKDSGLKLGETGAIWVNEKFQTSVPNIYAAGDVAESHNIITKKPAWVPLAWGANKMGRIAGENIAGN 304 (427)
T ss_pred cCCHHH--HHhcCcccCCCCCEEECCCcEeCCCCEEEeeeeEEeeeccCCCceeeechHHHHHHHHHHHHHhcCC
Confidence 999987 678899999999999999999999999999999863 347899999999999999874
No 67
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.90 E-value=6.3e-23 Score=253.78 Aligned_cols=259 Identities=19% Similarity=0.202 Sum_probs=182.2
Q ss_pred chhhhhhccccchHHHHHHHhh-----hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEeeeEEEec
Q psy14927 794 RQVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITG 868 (1074)
Q Consensus 794 k~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~v~~id 868 (1074)
.++|+||||||||+++|..|++ ++||+.+..||.+.+. ++.+. ...++.....+.+...||+|+.++.+..+
T Consensus 327 ~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~g-ip~~~--l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~ 403 (654)
T PRK12769 327 DKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTFG-IPAFK--LDKSLLARRREIFSAMGIEFELNCEVGKD 403 (654)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeeec-CCCcc--CCHHHHHHHHHHHHHCCeEEECCCEeCCc
Confidence 4569999999999999999999 8899988888877654 23221 12344455567778889999998533211
Q ss_pred CCeEEEEeCCCCeeEEEcCeEEEccCCCCC---CCCCCCCCCcceechhhHh---------------------cchH---
Q psy14927 869 PNTVTVIKSDGSTEEVKTKNILIATGSEVT---PFPGIEVDEETIVSSTGAL---------------------SLKK--- 921 (1074)
Q Consensus 869 ~~~~~v~~~~G~~~~i~~d~lIIATG~~p~---~ipgi~~~~~~v~t~~~~~---------------------~~~~--- 921 (1074)
+...+ ....||+||+|||+.+. .+|+... ..+++..+++ ..++
T Consensus 404 -----i~~~~---~~~~~DavilAtGa~~~~~l~i~g~~~--~Gv~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvV 473 (654)
T PRK12769 404 -----ISLES---LLEDYDAVFVGVGTYRSMKAGLPNEDA--PGVYDALPFLIANTKQVMGLEELPEEPFINTAGLNVVV 473 (654)
T ss_pred -----CCHHH---HHhcCCEEEEeCCCCCCCCCCCCCCCC--CCeEEhHHHHHHHHhhhccCccccccccccCCCCeEEE
Confidence 11111 12469999999999753 3454322 2333221111 0011
Q ss_pred ----------hhHHhhcCC-cEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEecC-Ce-EEEEEeec
Q psy14927 922 ----------GSVWGRLGA-EVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSG-DN-ITVTIENV 988 (1074)
Q Consensus 922 ----------A~~l~~~G~-~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~-~~-~~v~~~~~ 988 (1074)
|..+.++|. +||++++++...++..+.+ .+.+++.||++++++.++++..++ +. ..|++...
T Consensus 474 IGgG~~a~d~A~~a~r~ga~~Vt~i~~~~~~~~~~~~~e-----~~~~~~~Gv~~~~~~~~~~i~~~~~g~v~~v~~~~~ 548 (654)
T PRK12769 474 LGGGDTAMDCVRTALRHGASNVTCAYRRDEANMPGSKKE-----VKNAREEGANFEFNVQPVALELNEQGHVCGIRFLRT 548 (654)
T ss_pred ECCcHHHHHHHHHHHHcCCCeEEEeEecCCCCCCCCHHH-----HHHHHHcCCeEEeccCcEEEEECCCCeEEEEEEEEE
Confidence 556677886 7999998876543544333 356788999999999999997533 22 23443210
Q ss_pred -----cC---------CCCceEEEcCEEEEccCCcccCCccCccccCcccCCCCCeeeCC----CCCCCCCCEEEecccC
Q psy14927 989 -----KD---------PTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNS----RFQTVIPNIFAIGDCI 1050 (1074)
Q Consensus 989 -----~~---------~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~----~~~ts~~~IyAiGD~~ 1050 (1074)
+. +|+..++++|+||+++|+.|++..+ +...+++++++|.|.||+ +++||.|||||+||++
T Consensus 549 ~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~-~~~~gl~~~~~G~i~vd~~~~~~~~Ts~~gVfAaGD~~ 627 (654)
T PRK12769 549 RLGEPDAQGRRRPVPIPGSEFVMPADAVIMAFGFNPHGMPW-LESHGVTVDKWGRIIADVESQYRYQTSNPKIFAGGDAV 627 (654)
T ss_pred EecCcCCCCCCcceeCCCceEEEECCEEEECccCCCCcccc-ccccCCcCCCCCCEEeCCCcccCcccCCCCEEEcCCcC
Confidence 00 1334579999999999999986432 677899999999999985 4899999999999999
Q ss_pred CCCCcHHHHHHHHHHHHHHhh
Q psy14927 1051 HGPMLAHKAEDEGIVCVEGIA 1071 (1074)
Q Consensus 1051 ~~~~~~~~A~~~G~~aA~~I~ 1071 (1074)
.++.++..|+.+|+.||.+|.
T Consensus 628 ~g~~~vv~Ai~~Gr~AA~~I~ 648 (654)
T PRK12769 628 RGADLVVTAMAEGRHAAQGII 648 (654)
T ss_pred CCCcHHHHHHHHHHHHHHHHH
Confidence 998899999999999999986
No 68
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=99.89 E-value=1.2e-22 Score=242.21 Aligned_cols=264 Identities=20% Similarity=0.182 Sum_probs=181.6
Q ss_pred chhhhhhccccchHHHHHHHhh-----hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEeeeEEEec
Q psy14927 794 RQVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITG 868 (1074)
Q Consensus 794 k~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~v~~id 868 (1074)
.++|+||||||+|+++|..|++ ++|++.+..|+.+.+. ++.+.. ...+.....+.+...||+++.++.+..+
T Consensus 143 ~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~~g-ip~~~~--~~~~~~~~~~~~~~~gv~~~~~~~v~~~ 219 (471)
T PRK12810 143 GKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLRYG-IPDFKL--EKEVIDRRIELMEAEGIEFRTNVEVGKD 219 (471)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceeeec-CCcccC--CHHHHHHHHHHHHhCCcEEEeCCEECCc
Confidence 4569999999999999999999 7899988888776543 222211 1334444566778889999999654332
Q ss_pred CCeEEEEeCCCCeeEEEcCeEEEccCCC-CC--CCCCCCCCCcceechhhHhc------------------chH------
Q psy14927 869 PNTVTVIKSDGSTEEVKTKNILIATGSE-VT--PFPGIEVDEETIVSSTGALS------------------LKK------ 921 (1074)
Q Consensus 869 ~~~~~v~~~~G~~~~i~~d~lIIATG~~-p~--~ipgi~~~~~~v~t~~~~~~------------------~~~------ 921 (1074)
.. .. . ....||+||||||+. |. .+||.. ..++++..+++. .+.
T Consensus 220 ~~-----~~-~--~~~~~d~vvlAtGa~~~~~l~ipG~~--~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGg 289 (471)
T PRK12810 220 IT-----AE-E--LLAEYDAVFLGTGAYKPRDLGIPGRD--LDGVHFAMDFLIQNTRRVLGDETEPFISAKGKHVVVIGG 289 (471)
T ss_pred CC-----HH-H--HHhhCCEEEEecCCCCCCcCCCCCcc--CCCcEEHHHHHHHHHhhhccccccccccCCCCEEEEECC
Confidence 11 01 1 135799999999997 43 345432 234554332221 011
Q ss_pred -------hhHHhhcCC-cEEEEecCCccCCCCCCH----HHH-HHHHHHHHhCCCEEEeCceEEEEEecCCeE-EEEEee
Q psy14927 922 -------GSVWGRLGA-EVTAIEFMNAIGGMGIDG----EVA-KQFQRILGKQGMQFKLGTKVTGASKSGDNI-TVTIEN 987 (1074)
Q Consensus 922 -------A~~l~~~G~-~Vtlv~~~~~~~~~~~~~----~~~-~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~-~v~~~~ 987 (1074)
|..+.+.|. +||++++.+......++. ... ....+.+.+.||++++++.+++|.++++.+ .|++..
T Consensus 290 G~~g~e~A~~~~~~ga~~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GV~i~~~~~~~~i~~~~g~v~~V~~~~ 369 (471)
T PRK12810 290 GDTGMDCVGTAIRQGAKSVTQRDIMPMPPSRRNKNNPWPYWPMKLEVSNAHEEGVEREFNVQTKEFEGENGKVTGVKVVR 369 (471)
T ss_pred cHHHHHHHHHHHHcCCCeEEEccccCCCccccccccCCcccchHHHHHHHHHcCCeEEeccCceEEEccCCEEEEEEEEE
Confidence 556667775 799776554332111000 000 113456778899999999999998644443 344331
Q ss_pred cc--------CCCCceEEEcCEEEEccCCcccCCccCccccCcccCCCCCeeeC-CCCCCCCCCEEEecccCCCCCcHHH
Q psy14927 988 VK--------DPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVN-SRFQTVIPNIFAIGDCIHGPMLAHK 1058 (1074)
Q Consensus 988 ~~--------~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd-~~~~ts~~~IyAiGD~~~~~~~~~~ 1058 (1074)
.. .+|+..++++|.||+++|++|+...+ +...|++++++|+|.+| ++++|+.|||||+|||++++.++..
T Consensus 370 ~~~~~g~~~~~~g~~~~i~~D~VI~A~G~~p~~~~l-~~~~gl~~~~~g~i~vd~~~~~Ts~~gVfa~GD~~~g~~~~~~ 448 (471)
T PRK12810 370 TELGEGDFEPVEGSEFVLPADLVLLAMGFTGPEAGL-LAQFGVELDERGRVAAPDNAYQTSNPKVFAAGDMRRGQSLVVW 448 (471)
T ss_pred EEecCCCccccCCceEEEECCEEEECcCcCCCchhh-ccccCcccCCCCCEEeCCCcccCCCCCEEEccccCCCchhHHH
Confidence 10 02445789999999999999986433 67888999999999998 7999999999999999998888999
Q ss_pred HHHHHHHHHHHhh
Q psy14927 1059 AEDEGIVCVEGIA 1071 (1074)
Q Consensus 1059 A~~~G~~aA~~I~ 1071 (1074)
|+.+|+.||.+|.
T Consensus 449 Av~~G~~AA~~i~ 461 (471)
T PRK12810 449 AIAEGRQAARAID 461 (471)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999985
No 69
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.89 E-value=1.6e-22 Score=249.05 Aligned_cols=259 Identities=19% Similarity=0.185 Sum_probs=181.7
Q ss_pred chhhhhhccccchHHHHHHHhh-----hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEeeeEEEec
Q psy14927 794 RQVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITG 868 (1074)
Q Consensus 794 k~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~v~~id 868 (1074)
.++|+||||||+|+++|..|++ ++|++.+..|+.+.+.. ++++ ....+.....+.+...||+|+.++....+
T Consensus 310 ~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~gi-p~~~--l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~ 386 (639)
T PRK12809 310 SEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFGI-PPFK--LDKTVLSQRREIFTAMGIDFHLNCEIGRD 386 (639)
T ss_pred CCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeeccC-Cccc--CCHHHHHHHHHHHHHCCeEEEcCCccCCc
Confidence 4559999999999999999999 89999999888876643 3322 11344445567788899999999532111
Q ss_pred CCeEEEEeCCCCeeEEEcCeEEEccCCCCC---CCCCCCCCCcceechhhHh--------c-------------chH---
Q psy14927 869 PNTVTVIKSDGSTEEVKTKNILIATGSEVT---PFPGIEVDEETIVSSTGAL--------S-------------LKK--- 921 (1074)
Q Consensus 869 ~~~~~v~~~~G~~~~i~~d~lIIATG~~p~---~ipgi~~~~~~v~t~~~~~--------~-------------~~~--- 921 (1074)
+.+++ ....||+||+|||+.++ .+|+.. ...+++..+++ . .++
T Consensus 387 -----~~~~~---l~~~~DaV~latGa~~~~~~~i~g~~--~~gv~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~vvV 456 (639)
T PRK12809 387 -----ITFSD---LTSEYDAVFIGVGTYGMMRADLPHED--APGVIQALPFLTAHTRQLMGLPESEEYPLTDVEGKRVVV 456 (639)
T ss_pred -----CCHHH---HHhcCCEEEEeCCCCCCCCCCCCCCc--cCCcEeHHHHHHHHHHhhccCccccccccccCCCCeEEE
Confidence 11111 13469999999999753 344432 22333321111 0 011
Q ss_pred ----------hhHHhhcCC-cEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCe-E-EEEEeec
Q psy14927 922 ----------GSVWGRLGA-EVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDN-I-TVTIENV 988 (1074)
Q Consensus 922 ----------A~~l~~~G~-~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~-~-~v~~~~~ 988 (1074)
|..+.++|. +||++++++...++..+.++ ..+++.||++++++.+++|..++++ + .+.+...
T Consensus 457 iGgG~~a~d~a~~~~~~Ga~~Vt~v~rr~~~~~~~~~~e~-----~~a~~eGv~~~~~~~~~~i~~~~~g~v~~v~~~~~ 531 (639)
T PRK12809 457 LGGGDTTMDCLRTSIRLNAASVTCAYRRDEVSMPGSRKEV-----VNAREEGVEFQFNVQPQYIACDEDGRLTAVGLIRT 531 (639)
T ss_pred ECCcHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHH-----HHHHHcCCeEEeccCCEEEEECCCCeEEEEEEEEE
Confidence 555667784 89999998766445544433 2356889999999999999754332 2 2332110
Q ss_pred -----cC---------CCCceEEEcCEEEEccCCcccCCccCccccCcccCCCCCeeeCC----CCCCCCCCEEEecccC
Q psy14927 989 -----KD---------PTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNS----RFQTVIPNIFAIGDCI 1050 (1074)
Q Consensus 989 -----~~---------~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~----~~~ts~~~IyAiGD~~ 1050 (1074)
++ .|+..++++|.||+++|++|+...+ +...+++++++|+|.||+ +++|+.|+|||+||++
T Consensus 532 ~~~~~~~~g~~~~~~~~g~~~~i~aD~Vi~AiG~~p~~~~~-~~~~gl~~~~~G~i~vd~~~~~~~~Ts~~gVfA~GD~~ 610 (639)
T PRK12809 532 AMGEPGPDGRRRPRPVAGSEFELPADVLIMAFGFQAHAMPW-LQGSGIKLDKWGLIQTGDVGYLPTQTHLKKVFAGGDAV 610 (639)
T ss_pred EecCcCCCCCccceecCCceEEEECCEEEECcCCCCCcccc-ccccCcccCCCCCEEeCCCcccCcccCCCCEEEcCCCC
Confidence 00 1345689999999999999976433 577889999999999985 4789999999999999
Q ss_pred CCCCcHHHHHHHHHHHHHHhh
Q psy14927 1051 HGPMLAHKAEDEGIVCVEGIA 1071 (1074)
Q Consensus 1051 ~~~~~~~~A~~~G~~aA~~I~ 1071 (1074)
.++.++..|+.+|+.||.+|.
T Consensus 611 ~g~~~vv~Ai~~Gr~AA~~i~ 631 (639)
T PRK12809 611 HGADLVVTAMAAGRQAARDML 631 (639)
T ss_pred CCchHHHHHHHHHHHHHHHHH
Confidence 988889999999999999986
No 70
>KOG0404|consensus
Probab=99.89 E-value=4.6e-23 Score=204.83 Aligned_cols=258 Identities=20% Similarity=0.209 Sum_probs=191.4
Q ss_pred hhhhhccccchHHHHHHHhh-----hhhhhcc----cccccc-------chhhhhhhhhHHHhhhhhhHHHHhhhCCeEE
Q psy14927 796 VVLNTLGNCAAVQANYHLAT-----KLFTQAG----DKGVKL-------NLETMMGTKSAAVKALTGGIAHLFKSNKVTQ 859 (1074)
Q Consensus 796 ~VviiGgG~AGl~aA~~la~-----~l~e~~~----~~g~~~-------~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~ 859 (1074)
+|+|||.|||+..||++++| .+||..- .+|+++ +++.+|.+... .++.+.++++..++|.++
T Consensus 10 ~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtTTT~veNfPGFPdgi~G--~~l~d~mrkqs~r~Gt~i 87 (322)
T KOG0404|consen 10 NVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTTTTDVENFPGFPDGITG--PELMDKMRKQSERFGTEI 87 (322)
T ss_pred eEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeeeeeccccCCCCCccccc--HHHHHHHHHHHHhhccee
Confidence 59999999999999999999 5777633 345554 34444444332 466778899999999999
Q ss_pred EeeeEEEecC--CeEEEEeCCCCeeEEEcCeEEEccCCCCC--CCCCCCCCCc---ceech----hhHh---cch-----
Q psy14927 860 LNGHGKITGP--NTVTVIKSDGSTEEVKTKNILIATGSEVT--PFPGIEVDEE---TIVSS----TGAL---SLK----- 920 (1074)
Q Consensus 860 ~~g~v~~id~--~~~~v~~~~G~~~~i~~d~lIIATG~~p~--~ipgi~~~~~---~v~t~----~~~~---~~~----- 920 (1074)
+..+|..+|. .-+++.++.+ .+.+|.||+|||+... .+||-. +.. ..++. +.+. .-+
T Consensus 88 ~tEtVskv~~sskpF~l~td~~---~v~~~avI~atGAsAkRl~~pg~g-e~~fWqrGiSaCAVCDGaapifrnk~laVI 163 (322)
T KOG0404|consen 88 ITETVSKVDLSSKPFKLWTDAR---PVTADAVILATGASAKRLHLPGEG-EGEFWQRGISACAVCDGAAPIFRNKPLAVI 163 (322)
T ss_pred eeeehhhccccCCCeEEEecCC---ceeeeeEEEecccceeeeecCCCC-cchHHhcccchhhcccCcchhhcCCeeEEE
Confidence 9999988874 4566666554 7999999999999864 456531 111 11122 2111 100
Q ss_pred --------HhhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCe-EEEEEeeccCC
Q psy14927 921 --------KGSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDN-ITVTIENVKDP 991 (1074)
Q Consensus 921 --------~A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~-~~v~~~~~~~~ 991 (1074)
+|.+|.+.+.+|.+++|++.+.. ...+.++..+..+|++++++.+.+..++++. -.+.+++.. +
T Consensus 164 GGGDsA~EEA~fLtkyaskVyii~Rrd~fRA------s~~Mq~ra~~npnI~v~~nt~~~ea~gd~~~l~~l~ikn~~-t 236 (322)
T KOG0404|consen 164 GGGDSAMEEALFLTKYASKVYIIHRRDHFRA------SKIMQQRAEKNPNIEVLYNTVAVEALGDGKLLNGLRIKNVK-T 236 (322)
T ss_pred cCcHHHHHHHHHHHhhccEEEEEEEhhhhhH------HHHHHHHHhcCCCeEEEechhhhhhccCcccccceEEEecc-c
Confidence 08999999999999999998862 1223345567789999999999888876433 345666665 7
Q ss_pred CCceEEEcCEEEEccCCcccCCccCccccCcccCCCCCeeeC-CCCCCCCCCEEEecccCCC-CCcHHHHHHHHHHHHHH
Q psy14927 992 TKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVN-SRFQTVIPNIFAIGDCIHG-PMLAHKAEDEGIVCVEG 1069 (1074)
Q Consensus 992 g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd-~~~~ts~~~IyAiGD~~~~-~~~~~~A~~~G~~aA~~ 1069 (1074)
|+...++.+-+++++|..|++.++ +. .+++|.+|+|.+- ..-.||+||+||+||+.+. ..++.+|...|.++|..
T Consensus 237 ge~~dl~v~GlFf~IGH~Pat~~l--~g-qve~d~~GYi~t~pgts~TsvpG~FAAGDVqD~kyRQAvTaAgsGciaald 313 (322)
T KOG0404|consen 237 GEETDLPVSGLFFAIGHSPATKFL--KG-QVELDEDGYIVTRPGTSLTSVPGVFAAGDVQDKKYRQAVTAAGSGCIAALD 313 (322)
T ss_pred CcccccccceeEEEecCCchhhHh--cC-ceeeccCceEEeccCcccccccceeeccccchHHHHHHHhhhccchhhhhh
Confidence 888899999999999999999984 44 8999999999988 5667999999999999874 44678888888887754
No 71
>KOG2495|consensus
Probab=99.86 E-value=3.6e-21 Score=209.66 Aligned_cols=268 Identities=18% Similarity=0.250 Sum_probs=189.8
Q ss_pred cchhhhhhccccchHHHHHHHhh-----hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhC--CeEEEeeeEE
Q psy14927 793 QRQVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSN--KVTQLNGHGK 865 (1074)
Q Consensus 793 ~k~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~--gV~~~~g~v~ 865 (1074)
.|++|||+|.|++|.+.+..+-. +++......-..+-++..+-+.-+. ..+........+.. ++.++....+
T Consensus 54 kKk~vVVLGsGW~a~S~lk~ldts~YdV~vVSPRnyFlFTPLLpS~~vGTve~-rSIvEPIr~i~r~k~~~~~y~eAec~ 132 (491)
T KOG2495|consen 54 KKKRVVVLGSGWGAISLLKKLDTSLYDVTVVSPRNYFLFTPLLPSTTVGTVEL-RSIVEPIRAIARKKNGEVKYLEAECT 132 (491)
T ss_pred CCceEEEEcCchHHHHHHHhccccccceEEeccccceEEeeccCCccccceee-hhhhhhHHHHhhccCCCceEEecccE
Confidence 37779999999999999888877 3333333333333333333332221 33344444444433 7889999999
Q ss_pred EecCCeEEEEeC----CC--CeeEEEcCeEEEccCCCCC--CCCCCCCCCcceechhhHhcchH----------------
Q psy14927 866 ITGPNTVTVIKS----DG--STEEVKTKNILIATGSEVT--PFPGIEVDEETIVSSTGALSLKK---------------- 921 (1074)
Q Consensus 866 ~id~~~~~v~~~----~G--~~~~i~~d~lIIATG~~p~--~ipgi~~~~~~v~t~~~~~~~~~---------------- 921 (1074)
.+|++..+|++. ++ .+..+.|||||||+|+.|. .+||+.....+.-...+..+.+.
T Consensus 133 ~iDp~~k~V~~~s~t~~~~~~e~~i~YDyLViA~GA~~~TFgipGV~e~~~FLKEv~dAqeIR~~~~~~le~a~~~~l~~ 212 (491)
T KOG2495|consen 133 KIDPDNKKVHCRSLTADSSDKEFVIGYDYLVIAVGAEPNTFGIPGVEENAHFLKEVEDAQEIRRKVIDNLEKAELPGLSD 212 (491)
T ss_pred eecccccEEEEeeeccCCCcceeeecccEEEEeccCCCCCCCCCchhhchhhhhhhhHHHHHHHHHHHHHHHhhcCCCCh
Confidence 999987777652 22 2357999999999999983 46665332222112222222211
Q ss_pred ---------------------hhHHhhc--------------CCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEE
Q psy14927 922 ---------------------GSVWGRL--------------GAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFK 966 (1074)
Q Consensus 922 ---------------------A~~l~~~--------------G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~ 966 (1074)
|..|... -.+||+++..+.++ +.|+..+.++.++.+.+.||.+.
T Consensus 213 eerkRlLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~iL-~mFdkrl~~yae~~f~~~~I~~~ 291 (491)
T KOG2495|consen 213 EERKRLLHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHIL-NMFDKRLVEYAENQFVRDGIDLD 291 (491)
T ss_pred HHhhheEEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhHH-HHHHHHHHHHHHHHhhhccceee
Confidence 3333221 24899999999999 89999999999999999999999
Q ss_pred eCceEEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccCCcccCCccCccccCcccCCCC--CeeeCCCCCC-CCCCE
Q psy14927 967 LGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKG--RVPVNSRFQT-VIPNI 1043 (1074)
Q Consensus 967 ~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G--~I~Vd~~~~t-s~~~I 1043 (1074)
.++.|..+++. . +..+.. +|+.++|++-+++|+||..|..- ...+.-.+++.| .+.||+++|. +.+||
T Consensus 292 ~~t~Vk~V~~~--~--I~~~~~--~g~~~~iPYG~lVWatG~~~rp~---~k~lm~~i~e~~rr~L~vDE~LrV~G~~nv 362 (491)
T KOG2495|consen 292 TGTMVKKVTEK--T--IHAKTK--DGEIEEIPYGLLVWATGNGPRPV---IKDLMKQIDEQGRRGLAVDEWLRVKGVKNV 362 (491)
T ss_pred cccEEEeecCc--E--EEEEcC--CCceeeecceEEEecCCCCCchh---hhhHhhcCCccCceeeeeeceeeccCcCce
Confidence 99999999873 3 443332 37778999999999999988654 345555566777 8999999995 89999
Q ss_pred EEecccCC---CCCcHHHHHHHHHHHHHHhh
Q psy14927 1044 FAIGDCIH---GPMLAHKAEDEGIVCVEGIA 1071 (1074)
Q Consensus 1044 yAiGD~~~---~~~~~~~A~~~G~~aA~~I~ 1071 (1074)
||+|||+. .+++++.|.+||..+|.++-
T Consensus 363 fAiGDca~~~~~~~tAQVA~QqG~yLAk~fn 393 (491)
T KOG2495|consen 363 FAIGDCADQRGLKPTAQVAEQQGAYLAKNFN 393 (491)
T ss_pred EEeccccccccCccHHHHHHHHHHHHHHHHH
Confidence 99999994 35589999999999999863
No 72
>KOG2247|consensus
Probab=99.85 E-value=4.9e-24 Score=232.80 Aligned_cols=316 Identities=12% Similarity=0.029 Sum_probs=276.5
Q ss_pred HHhhhcCCHHHHHHHHHHcCcccchhhhHh--hhcHHHHHHHhhcCCChHHHHHHHHHHHhccCHHHHHHHHHHhhChhh
Q psy14927 4 EETMKNGDIDRAIRMFEKAETHQQHVPRML--LENTDKLEKYIIQSKDPVLLKWWAQYIESTEDMDLAMKYYEEARDYLS 81 (1074)
Q Consensus 4 ~~~~~~g~~~eA~~~Ye~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~~~ 81 (1074)
+-|+.+++..||+++||..+.++ ++.-.| .++|.++.+.+.++.+++++..||++.|-.+ ..|+ +|...+|++.
T Consensus 180 ~~L~v~~qegeta~ltevggepd-nm~~~y~k~n~w~kage~m~sVvsgKkhl~yak~nE~D~--pval-~fq~~~gni~ 255 (615)
T KOG2247|consen 180 NTLSVTTQEGETASLTEVGGEPD-NMDFFYGKVNGWGKAGETMVSVVSGKKHLMYAKYNELDE--PVAL-QFQEKYGNIH 255 (615)
T ss_pred HHHHHhhhccceeeeeeccCccc-hhhhheeeeeccccccceeeeeeecHHHHHHHhhcCCCC--ccce-EeeecCCcee
Confidence 45788899999999999999998 665444 4689999999999999999999999999988 7777 9999999999
Q ss_pred hhhH-hh-ccCCHHHHHHHHHhcCChHHHHHHHHHHHhcCChHHHHHHHHHhCChHHHHHHHHHhCchHHHHHHhhhcCc
Q psy14927 82 MVRV-LC-FLQDFSRAAELANASGDTAAAYHLARQYENSGQFDEAIHFYSVAGSCGNAVRLCKEQALDDQLWNLALSAGP 159 (1074)
Q Consensus 82 ~vr~-l~-~~~~~~~a~~i~~~~~~~~~~~~la~~~~~~g~~~~Ai~~y~~a~~~~~A~~la~~~~~~~~~~~l~~~~~~ 159 (1074)
.+|+ +. ++.++..|..++.+| ...+...|.+|.+. |+++|++|.+.++|+++||.|+..++...++.++.....-
T Consensus 256 cyrwylDg~i~igf~ag~iV~iS--~h~aeLgaeffqkl-dy~~aLqsiavsqcvnkaftlgdn~nkvRdl~el~e~y~n 332 (615)
T KOG2247|consen 256 CYRWYLDGYILIGFDAGYIVSIS--AHNAELGAEFFQKL-DYRGALQSIAVSQCVNKAFTLGDNMNKVRDLDELTEVYMN 332 (615)
T ss_pred EEEEeccccccccccceeEEEEe--ccchHHHHHHHHHh-hHHhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 9999 66 799999999999987 77888999999999 9999999999999999999999999999998887644322
Q ss_pred hhHHHHHHHHcc-CChhHHHHHHHHhCChHHHHHHHHhhccCCcchHHHHHHHHHHhcCCChhhHHHhhhhcchHHHHHH
Q psy14927 160 SEQIEAATYLET-IEPDKAVLLYHKAGALHKALDLAFKLTLSNSGLVFQIKAMKCLLKSGDTNKIIFFAGVSRMKEIYVM 238 (1074)
Q Consensus 160 ~~~~~~A~~~e~-~~~~~A~~ly~kaG~~~kAl~l~~~~~~~~~~~~~~~~a~k~l~~~~~~~~~i~~a~~~r~~~l~~~ 238 (1074)
. +..|+|++. ..+..|+++|..++++..|..+++|++ |..+..+.+..+-..
T Consensus 333 ~--L~eaek~lge~~~t~dgqlyals~Q~g~l~~fLtKLp-------------------------ilc~a~Sn~i~ylt~ 385 (615)
T KOG2247|consen 333 T--LIEAEKNLGEIEVTEDGQLYALSSQSGVLSIFLTKLP-------------------------ILCAAYSNSICYLTN 385 (615)
T ss_pred H--HHHHHhccCceeeeeccceeeehhccchHHHHHHhhh-------------------------hhhhhhcchHHHHhh
Confidence 2 678899988 678999999999999999999999953 444455566555566
Q ss_pred HHHHHhcCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHhHHHHhhcCHHHHHHHHHHHHHHHHhcCCCchHHHHHHH
Q psy14927 239 AANYLQSSDWKSQPELLKSIISFYSKGKAPHLLANFYVSCAQVEIDEFGNYEKGLGALNEAKRCLLKHNDSMYETLKSSV 318 (1074)
Q Consensus 239 aa~yl~~~~~~~~~~~~~~i~~~Y~k~~~~~~aa~~~~~~a~~ei~e~~~y~~a~~~l~~a~~~l~~~~~~~~~~~~~~~ 318 (1074)
+.+++.++ .|++++..+++|. .++.+++.+++.+ +.-|| ..+.+.|+.+.+.+++...+++-+|..++
T Consensus 386 L~evtvge----~~vep~~lftLyv------DaepTaV~vg~~h-lavGN-~nnRdlfY~mhQ~areK~~rveylmtv~~ 453 (615)
T KOG2247|consen 386 LTEVTVGE----PEVEPKGLFTLYV------DAEPTAVGVGPLH-LAVGN-MNNRDLFYDMHQSAREKINRVEYLMTVTN 453 (615)
T ss_pred hheeeecC----cccCCccceEEEE------ecccceEEEehHH-Hhhcc-chhHHHHHHHHHHHHHHhhccchhhhhhH
Confidence 66666665 4477788888898 7889999999999 99999 99999999999999999999999999998
Q ss_pred HHHHH----HHHHhhcCChHHHhhHHHHHHHHHhhccCcchhHHHHHHHHHH
Q psy14927 319 VEKLA----EVEIDEFGNYEKGLGALNEAKRCLLKHNDSMYETLKSSVVEKI 366 (1074)
Q Consensus 319 ~~~~~----~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 366 (1074)
+.++. ++++. ++++..|+++|.+.+.++++||.|..++++|++++|.
T Consensus 454 I~LHsyyaa~~f~~-r~~lhLaAksl~~t~nvi~~Fpe~~~~~l~sya~~~~ 504 (615)
T KOG2247|consen 454 IQLHSYYAAVNFGS-RLRLHLAAKSLMLTDNVIIEFPEARNATLYSYALTEN 504 (615)
T ss_pred HHHHHHHHHHHHHh-HHHHHHHHHHHHhhhchhhcCcHhhhhhhheeeeecc
Confidence 88764 45555 6999999999999999999999999999999999998
No 73
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=99.85 E-value=7.8e-21 Score=226.54 Aligned_cols=263 Identities=20% Similarity=0.223 Sum_probs=174.2
Q ss_pred chhhhhhccccchHHHHHHHhh-----hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEeeeEEEec
Q psy14927 794 RQVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITG 868 (1074)
Q Consensus 794 k~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~v~~id 868 (1074)
.++|+||||||+|+++|..|++ ++|++.+..|+.+.+. ++.+. ....+.....+.+...||+++.++....+
T Consensus 143 ~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~~g-ip~~~--~~~~~~~~~~~~~~~~Gv~~~~~~~v~~~ 219 (485)
T TIGR01317 143 GKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLMYG-IPNMK--LDKAIVDRRIDLLSAEGIDFVTNTEIGVD 219 (485)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceeecc-CCCcc--CCHHHHHHHHHHHHhCCCEEECCCEeCCc
Confidence 4569999999999999999998 8899888887766543 22211 11233444556778889999999644221
Q ss_pred CCeEEEEeCCCCeeEEEcCeEEEccCCC-CC--CCCCCCCCCcceechhhHh--------------------cchH----
Q psy14927 869 PNTVTVIKSDGSTEEVKTKNILIATGSE-VT--PFPGIEVDEETIVSSTGAL--------------------SLKK---- 921 (1074)
Q Consensus 869 ~~~~~v~~~~G~~~~i~~d~lIIATG~~-p~--~ipgi~~~~~~v~t~~~~~--------------------~~~~---- 921 (1074)
. .. ++ ....||.||||||++ |. ++||.. ...+++..+++ ..++
T Consensus 220 ~-----~~-~~--~~~~~d~VilAtGa~~~~~l~i~G~~--~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~~~gk~VvVi 289 (485)
T TIGR01317 220 I-----SA-DE--LKEQFDAVVLAGGATKPRDLPIPGRE--LKGIHYAMEFLPSATKALLGKDFKDIIFIKAKGKKVVVI 289 (485)
T ss_pred c-----CH-HH--HHhhCCEEEEccCCCCCCcCCCCCcC--CCCcEeHHHHHHHHhhhhccccccccccccCCCCEEEEE
Confidence 1 11 11 235799999999998 53 344432 23444432221 0111
Q ss_pred ---------hhHHhhcC-CcEEEEecCCccCCCC--------CCH--HHHHHHHHHHHhCCCEE-EeCceEEEEEecC-C
Q psy14927 922 ---------GSVWGRLG-AEVTAIEFMNAIGGMG--------IDG--EVAKQFQRILGKQGMQF-KLGTKVTGASKSG-D 979 (1074)
Q Consensus 922 ---------A~~l~~~G-~~Vtlv~~~~~~~~~~--------~~~--~~~~~~~~~l~~~gV~i-~~~~~v~~i~~~~-~ 979 (1074)
|..+.++| .+|+++++.+..+... ++. ++.....+..+..||.+ ++++.+.+|.+++ +
T Consensus 290 GgG~~g~d~a~~a~~~ga~~V~vv~~~~~~~~~~~~~~~~~~~~~~~e~~~a~~e~~~~~gv~~~~~~~~~~~i~~~~~g 369 (485)
T TIGR01317 290 GGGDTGADCVGTSLRHGAASVHQFEIMPKPPEARAKDNPWPEWPRVYRVDYAHEEAAAHYGRDPREYSILTKEFIGDDEG 369 (485)
T ss_pred CCcHHHHHHHHHHHHcCCCEEEEEEecCCChhhcccccCCCccchhhhhHHHHHhhhhhcCccceEEecCcEEEEEcCCC
Confidence 34455565 5799998877654111 111 12223344444567654 5678888887653 2
Q ss_pred e-EEEEEee---c---c-------CCCCceEEEcCEEEEccCCc-ccCCccCccccCcccCCCCCeee-CCCCCCCCCCE
Q psy14927 980 N-ITVTIEN---V---K-------DPTKKEELSCDALLVCVGRR-PYTHNLGLEEIGIEKDEKGRVPV-NSRFQTVIPNI 1043 (1074)
Q Consensus 980 ~-~~v~~~~---~---~-------~~g~~~~i~~D~vi~a~G~~-p~~~~l~l~~~gl~ld~~G~I~V-d~~~~ts~~~I 1043 (1074)
. ..+++.. . + ..|+..++++|+||+++|+. |++.+ +...|++++++|+|.+ |++++|+.|||
T Consensus 370 ~v~~v~~~~~~~~~~~~Gr~~p~~~~g~~~~i~~D~Vi~AiG~~~p~~~~--~~~~gl~~~~~G~i~~~~~~~~Ts~~gV 447 (485)
T TIGR01317 370 KVTALRTVRVEWKKSQDGKWQFVEIPGSEEVFEADLVLLAMGFVGPEQIL--LDDFGVKKTRRGNISAGYDDYSTSIPGV 447 (485)
T ss_pred eEEEEEEEEEEeccCCCCCccceecCCceEEEECCEEEEccCcCCCcccc--ccccCcccCCCCCEEecCCCceECCCCE
Confidence 2 2333211 0 0 01334689999999999996 88886 5678898888999954 57899999999
Q ss_pred EEecccCCCCCcHHHHHHHHHHHHHHhh
Q psy14927 1044 FAIGDCIHGPMLAHKAEDEGIVCVEGIA 1071 (1074)
Q Consensus 1044 yAiGD~~~~~~~~~~A~~~G~~aA~~I~ 1071 (1074)
||+|||++++.++..|+.+|+.||.+|.
T Consensus 448 fAaGD~~~g~~~~~~Av~~G~~AA~~i~ 475 (485)
T TIGR01317 448 FAAGDCRRGQSLIVWAINEGRKAAAAVD 475 (485)
T ss_pred EEeeccCCCcHHHHHHHHHHHHHHHHHH
Confidence 9999999988889999999999999985
No 74
>KOG1538|consensus
Probab=99.84 E-value=1.4e-20 Score=210.31 Aligned_cols=198 Identities=14% Similarity=0.229 Sum_probs=178.5
Q ss_pred hhhcCCHHHHHHHHHHcCcccchhhhHhhh--cHHHHHHHhhcCCC---hHHHHHHHHHHHhccCHHHHHHHHHHhhChh
Q psy14927 6 TMKNGDIDRAIRMFEKAETHQQHVPRMLLE--NTDKLEKYIIQSKD---PVLLKWWAQYIESTEDMDLAMKYYEEARDYL 80 (1074)
Q Consensus 6 ~~~~g~~~eA~~~Ye~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~---~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~~ 80 (1074)
+.=.|+|.||+++|.++| ++.++..||++ +|+.+++++.+.++ +.|.+..|.|+.+..+++.|+++...+||..
T Consensus 642 ~Ay~gKF~EAAklFk~~G-~enRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~ 720 (1081)
T KOG1538|consen 642 FAYQGKFHEAAKLFKRSG-HENRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPKAAAEMLISAGEHV 720 (1081)
T ss_pred HHhhhhHHHHHHHHHHcC-chhhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcHHHHHHhhcccchh
Confidence 455799999999999999 55599999986 89999999999754 4488999999999999999999999999999
Q ss_pred hhhhHhhccCCHHHHHHHHHh--cCChHHHHH-------------HHHHHHhcCChHHHHHHHHHhCChHHHHHHHHHhC
Q psy14927 81 SMVRVLCFLQDFSRAAELANA--SGDTAAAYH-------------LARQYENSGQFDEAIHFYSVAGSCGNAVRLCKEQA 145 (1074)
Q Consensus 81 ~~vr~l~~~~~~~~a~~i~~~--~~~~~~~~~-------------la~~~~~~g~~~~Ai~~y~~a~~~~~A~~la~~~~ 145 (1074)
.++.+....||.+.+.+|.+. ..+.+.... .|++|.+.||..+-+++.+..+.|++||+||++|
T Consensus 721 KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~ksiVqlHve~~~W~eAFalAe~h- 799 (1081)
T KOG1538|consen 721 KAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDLKSLVQLHVETQRWDEAFALAEKH- 799 (1081)
T ss_pred hhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccHHHHhhheeecccchHhHhhhhhC-
Confidence 999999999999999999984 234444333 3488889999999999999999999999999999
Q ss_pred chHHHHHHhhhcCchhHHHHHHHHccCC-hhHHHHHHHHhCChHHHHHHHHhhc--------cCCcchHHHHHHHHHH
Q psy14927 146 LDDQLWNLALSAGPSEQIEAATYLETIE-PDKAVLLYHKAGALHKALDLAFKLT--------LSNSGLVFQIKAMKCL 214 (1074)
Q Consensus 146 ~~~~~~~l~~~~~~~~~~~~A~~~e~~~-~~~A~~ly~kaG~~~kAl~l~~~~~--------~~~~~~~~~~~a~k~l 214 (1074)
|+..++.+.+.|+|+.+++ |++|.+.|||||+-.+|..++-+++ +.|++|+||+++|++|
T Consensus 800 ---------Pe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnnav~E~Rf~DA~y~yw~L~~q~L 868 (1081)
T KOG1538|consen 800 ---------PEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTNNAVAESRFNDAAYYYWMLSMQCL 868 (1081)
T ss_pred ---------ccccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhhhhhhhhhhccchhHHHHhhhhhh
Confidence 9999999999999999965 9999999999999999999999986 4678999999999999
No 75
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=99.84 E-value=3.4e-20 Score=225.99 Aligned_cols=257 Identities=20% Similarity=0.240 Sum_probs=175.3
Q ss_pred chhhhhhccccchHHHHHHHhh-----hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEeeeEEEec
Q psy14927 794 RQVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITG 868 (1074)
Q Consensus 794 k~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~v~~id 868 (1074)
.++|+|||+||+||++|..|++ +++++.+..|+.+.+. ++.+. ...++.....+.+.+.|+++..++....+
T Consensus 137 g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~g-ip~~~--~~~~~~~~~l~~~~~~Gv~~~~~~~~~~~ 213 (564)
T PRK12771 137 GKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYG-IPAYR--LPREVLDAEIQRILDLGVEVRLGVRVGED 213 (564)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeec-CCCcc--CCHHHHHHHHHHHHHCCCEEEeCCEECCc
Confidence 4559999999999999999988 7899988888877554 22221 11333333455667789999888432112
Q ss_pred CCeEEEEeCCCCeeEEEcCeEEEccCCCCC---CCCCCCCCCcceechhhHhc----------chH-------------h
Q psy14927 869 PNTVTVIKSDGSTEEVKTKNILIATGSEVT---PFPGIEVDEETIVSSTGALS----------LKK-------------G 922 (1074)
Q Consensus 869 ~~~~~v~~~~G~~~~i~~d~lIIATG~~p~---~ipgi~~~~~~v~t~~~~~~----------~~~-------------A 922 (1074)
..... ....||+||+|||+.+. .+|+.. ...+++..+++. .++ +
T Consensus 214 ~~~~~--------~~~~~D~Vi~AtG~~~~~~~~i~g~~--~~gv~~~~~~l~~~~~~~~~~~gk~v~ViGgg~~a~d~a 283 (564)
T PRK12771 214 ITLEQ--------LEGEFDAVFVAIGAQLGKRLPIPGED--AAGVLDAVDFLRAVGEGEPPFLGKRVVVIGGGNTAMDAA 283 (564)
T ss_pred CCHHH--------HHhhCCEEEEeeCCCCCCcCCCCCCc--cCCcEEHHHHHHHhhccCCcCCCCCEEEECChHHHHHHH
Confidence 11000 11248999999999753 344422 122333222221 111 5
Q ss_pred hHHhhcC-CcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCe-EEEEE---ee----ccC---
Q psy14927 923 SVWGRLG-AEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDN-ITVTI---EN----VKD--- 990 (1074)
Q Consensus 923 ~~l~~~G-~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~-~~v~~---~~----~~~--- 990 (1074)
..+.++| .+|+++++.+....+.....+ +...+.||++++++.+.++.+++++ +.+++ .. .++
T Consensus 284 ~~a~~lga~~v~ii~r~~~~~~~~~~~~~-----~~a~~~GVki~~~~~~~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~ 358 (564)
T PRK12771 284 RTARRLGAEEVTIVYRRTREDMPAHDEEI-----EEALREGVEINWLRTPVEIEGDENGATGLRVITVEKMELDEDGRPS 358 (564)
T ss_pred HHHHHcCCCEEEEEEecCcccCCCCHHHH-----HHHHHcCCEEEecCCcEEEEcCCCCEEEEEEEEEEecccCCCCCee
Confidence 5566777 679999988754334443333 3345689999999999999875443 22222 11 000
Q ss_pred --CCCceEEEcCEEEEccCCcccCCccCccc-cCcccCCCCCeeeCC-CCCCCCCCEEEecccCCCCCcHHHHHHHHHHH
Q psy14927 991 --PTKKEELSCDALLVCVGRRPYTHNLGLEE-IGIEKDEKGRVPVNS-RFQTVIPNIFAIGDCIHGPMLAHKAEDEGIVC 1066 (1074)
Q Consensus 991 --~g~~~~i~~D~vi~a~G~~p~~~~l~l~~-~gl~ld~~G~I~Vd~-~~~ts~~~IyAiGD~~~~~~~~~~A~~~G~~a 1066 (1074)
+|+..++++|+||+++|+.|++.++ .. .++. +++|+|.||+ +++|++||||++|||+.+|.++..|+.+|+.|
T Consensus 359 ~~~g~~~~i~~D~Vi~A~G~~p~~~~~--~~~~gl~-~~~G~i~vd~~~~~ts~~~Vfa~GD~~~g~~~v~~Av~~G~~a 435 (564)
T PRK12771 359 PVTGEEETLEADLVVLAIGQDIDSAGL--ESVPGVE-VGRGVVQVDPNFMMTGRPGVFAGGDMVPGPRTVTTAIGHGKKA 435 (564)
T ss_pred ecCCceEEEECCEEEECcCCCCchhhh--hhccCcc-cCCCCEEeCCCCccCCCCCEEeccCcCCCchHHHHHHHHHHHH
Confidence 2445689999999999999998874 43 5777 7889999997 78899999999999999888999999999999
Q ss_pred HHHhh
Q psy14927 1067 VEGIA 1071 (1074)
Q Consensus 1067 A~~I~ 1071 (1074)
|.+|.
T Consensus 436 A~~i~ 440 (564)
T PRK12771 436 ARNID 440 (564)
T ss_pred HHHHH
Confidence 99984
No 76
>PLN02852 ferredoxin-NADP+ reductase
Probab=99.84 E-value=4.4e-20 Score=216.38 Aligned_cols=269 Identities=15% Similarity=0.111 Sum_probs=181.4
Q ss_pred chhhhhhccccchHHHHHHHhh-------hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEeeeEEE
Q psy14927 794 RQVVLNTLGNCAAVQANYHLAT-------KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKI 866 (1074)
Q Consensus 794 k~~VviiGgG~AGl~aA~~la~-------~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~v~~ 866 (1074)
+++|+||||||||++||..|++ ++||+.+.+||.+.+...+.+. ....+...+...+...+|+|+.+....
T Consensus 26 ~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~gvaP~~~--~~k~v~~~~~~~~~~~~v~~~~nv~vg 103 (491)
T PLN02852 26 PLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRSGVAPDHP--ETKNVTNQFSRVATDDRVSFFGNVTLG 103 (491)
T ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEeeccCCCcc--hhHHHHHHHHHHHHHCCeEEEcCEEEC
Confidence 5569999999999999999974 8999999999988775434332 235566667777888899998873221
Q ss_pred ecCCeEEEEeCCCCeeEEEcCeEEEccCCCCCCCCCCCC-CCcceechhhHhc----------------chH--------
Q psy14927 867 TGPNTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGIEV-DEETIVSSTGALS----------------LKK-------- 921 (1074)
Q Consensus 867 id~~~~~v~~~~G~~~~i~~d~lIIATG~~p~~ipgi~~-~~~~v~t~~~~~~----------------~~~-------- 921 (1074)
..+++++- ...||+||||||+.+...+++++ +...+++..++.. ..+
T Consensus 104 -----~dvtl~~L---~~~yDaVIlAtGa~~~~~l~IpG~d~~gV~~a~~fl~~~ng~~d~~~~~~~~~~gk~VvVIGgG 175 (491)
T PLN02852 104 -----RDVSLSEL---RDLYHVVVLAYGAESDRRLGIPGEDLPGVLSAREFVWWYNGHPDCVHLPPDLKSSDTAVVLGQG 175 (491)
T ss_pred -----ccccHHHH---hhhCCEEEEecCCCCCCCCCCCCCCCCCeEEHHHHHHHhhcchhhhhhhhcccCCCEEEEECCC
Confidence 12233332 24699999999998632223333 2345666655531 011
Q ss_pred ------hhHHhhc--------------------CC-cEEEEecCCccCCCCCCHHHHH----------------------
Q psy14927 922 ------GSVWGRL--------------------GA-EVTAIEFMNAIGGMGIDGEVAK---------------------- 952 (1074)
Q Consensus 922 ------A~~l~~~--------------------G~-~Vtlv~~~~~~~~~~~~~~~~~---------------------- 952 (1074)
|..+.+. |. +|+|+.|+...-.+...+++++
T Consensus 176 nvAlD~Ar~L~~~~~~l~~tdi~~~~l~~l~~~~~~~V~iv~RRg~~~~~ft~~Elrel~~l~~~~~~~~~~~~~~~~~~ 255 (491)
T PLN02852 176 NVALDCARILLRPTDELASTDIAEHALEALRGSSVRKVYLVGRRGPVQAACTAKELRELLGLKNVRVRIKEADLTLSPED 255 (491)
T ss_pred HHHHHHHHHHHhCccccccccccHHHHHHHhhCCCCEEEEEEcCChHhCCCCHHHHHHHhccCCCceeechhhhccccch
Confidence 5555443 54 6999999885432222223222
Q ss_pred ---------------HHHHHHHh---------CCCEEEeCceEEEEEec--C-C-eEEEEEeecc-------------CC
Q psy14927 953 ---------------QFQRILGK---------QGMQFKLGTKVTGASKS--G-D-NITVTIENVK-------------DP 991 (1074)
Q Consensus 953 ---------------~~~~~l~~---------~gV~i~~~~~v~~i~~~--~-~-~~~v~~~~~~-------------~~ 991 (1074)
.+.+...+ ++|.|++...+.+|.++ + + ...+++.... ++
T Consensus 256 ~~~~~~~r~~~r~~~~l~~~a~~~~~~~~~~~~~v~~~f~~sP~ei~~~~~~~~~v~~l~~~~~~l~~~~~~g~~~~~~t 335 (491)
T PLN02852 256 EEELKASRPKRRVYELLSKAAAAGKCAPSGGQRELHFVFFRNPTRFLDSGDGNGHVAGVKLERTVLEGAAGSGKQVAVGT 335 (491)
T ss_pred hhhhccchhhHHHHHHHHHHHhhcccccCCCCceEEEEccCCCeEEEccCCCCCcEEEEEEEEeecCCCcccCCcccCCC
Confidence 11112112 57999999999999842 1 2 2334443110 13
Q ss_pred CCceEEEcCEEEEccCCc--ccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEEecccCCCCC-cHHHHHHHHHHHHH
Q psy14927 992 TKKEELSCDALLVCVGRR--PYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGPM-LAHKAEDEGIVCVE 1068 (1074)
Q Consensus 992 g~~~~i~~D~vi~a~G~~--p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~~~~~-~~~~A~~~G~~aA~ 1068 (1074)
|+.++++||.||.++|++ |.+.+......++..+.+|+|.+|+.++|+.|||||+|||..+|. .+..++.+|..++.
T Consensus 336 ge~~~i~~D~Vi~aIG~~~~p~~~l~f~~~~gv~~n~~G~V~~d~~~~T~ipGvyAaGDi~~Gp~gvI~t~~~dA~~ta~ 415 (491)
T PLN02852 336 GEFEDLPCGLVLKSIGYKSLPVDGLPFDHKRGVVPNVHGRVLSSASGADTEPGLYVVGWLKRGPTGIIGTNLTCAEETVA 415 (491)
T ss_pred CCEEEEECCEEEEeecCCCCCCCCCccccCcCeeECCCceEEeCCCCccCCCCEEEeeeEecCCCCeeeecHhhHHHHHH
Confidence 556789999999999998 555531023446777889999999888999999999999999876 78889999999999
Q ss_pred HhhC
Q psy14927 1069 GIAG 1072 (1074)
Q Consensus 1069 ~I~~ 1072 (1074)
+|+.
T Consensus 416 ~i~~ 419 (491)
T PLN02852 416 SIAE 419 (491)
T ss_pred HHHH
Confidence 8863
No 77
>PRK13984 putative oxidoreductase; Provisional
Probab=99.83 E-value=3.5e-20 Score=228.10 Aligned_cols=257 Identities=19% Similarity=0.211 Sum_probs=171.2
Q ss_pred chhhhhhccccchHHHHHHHhh-----hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEeeeEEEec
Q psy14927 794 RQVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITG 868 (1074)
Q Consensus 794 k~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~v~~id 868 (1074)
.++|+|||+||+|+++|..|++ ++|++.+..|+.+.+. ++... ...++.....+.+...||+++.++.+..+
T Consensus 283 ~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~~~-i~~~~--~~~~~~~~~~~~~~~~gv~~~~~~~v~~~ 359 (604)
T PRK13984 283 NKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMRYG-IPSYR--LPDEALDKDIAFIEALGVKIHLNTRVGKD 359 (604)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEeec-CCccc--CCHHHHHHHHHHHHHCCcEEECCCEeCCc
Confidence 5569999999999999999999 7888888887766543 22111 12334444566788899999999543222
Q ss_pred CCeEEEEeCCCCeeEEEcCeEEEccCCCC---CCCCCCCCCCcceechhhHhc---------------chH---------
Q psy14927 869 PNTVTVIKSDGSTEEVKTKNILIATGSEV---TPFPGIEVDEETIVSSTGALS---------------LKK--------- 921 (1074)
Q Consensus 869 ~~~~~v~~~~G~~~~i~~d~lIIATG~~p---~~ipgi~~~~~~v~t~~~~~~---------------~~~--------- 921 (1074)
+..++ ....||+||||||+.+ +++||.. ...+++..+++. .+.
T Consensus 360 -----~~~~~---~~~~yD~vilAtGa~~~r~l~i~G~~--~~gv~~a~~~l~~~~~~~~~~~~~~~~~k~VvVIGGG~~ 429 (604)
T PRK13984 360 -----IPLEE---LREKHDAVFLSTGFTLGRSTRIPGTD--HPDVIQALPLLREIRDYLRGEGPKPKIPRSLVVIGGGNV 429 (604)
T ss_pred -----CCHHH---HHhcCCEEEEEcCcCCCccCCCCCcC--CcCeEeHHHHHHHHHhhhccCCCcCCCCCcEEEECCchH
Confidence 11111 1357999999999874 2445542 234554444332 011
Q ss_pred ----hhHHhhcC------CcEEEEecCC--ccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCe-EEEEEeec
Q psy14927 922 ----GSVWGRLG------AEVTAIEFMN--AIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDN-ITVTIENV 988 (1074)
Q Consensus 922 ----A~~l~~~G------~~Vtlv~~~~--~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~-~~v~~~~~ 988 (1074)
|..+.++| .+|+++.... ..+ +....+ +.+ +.+.||++++++.+.++..+++. ..|++...
T Consensus 430 g~e~A~~l~r~~~~~~g~~~V~v~~~~r~~~~~-~~~~~e----~~~-~~~~GV~i~~~~~~~~i~~~~g~v~~v~~~~~ 503 (604)
T PRK13984 430 AMDIARSMARLQKMEYGEVNVKVTSLERTFEEM-PADMEE----IEE-GLEEGVVIYPGWGPMEVVIENDKVKGVKFKKC 503 (604)
T ss_pred HHHHHHHHHhccccccCceEEEEeccccCcccC-CCCHHH----HHH-HHHcCCEEEeCCCCEEEEccCCEEEEEEEEEE
Confidence 66777664 3788874321 122 222222 222 34679999999999888754443 23433210
Q ss_pred ------c-------CCCCceEEEcCEEEEccCCcccCCccCcc-ccCcccCCCCCeeeCCCCCCCCCCEEEecccCCCCC
Q psy14927 989 ------K-------DPTKKEELSCDALLVCVGRRPYTHNLGLE-EIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGPM 1054 (1074)
Q Consensus 989 ------~-------~~g~~~~i~~D~vi~a~G~~p~~~~l~l~-~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~~~~~ 1054 (1074)
+ .+|.+.++++|.||+++|++|+++++... ..++++ ++|+|.||++++|++|||||+|||+.++.
T Consensus 504 ~~~~~~~G~~~~~~~~g~~~~i~aD~Vi~aiG~~p~~~~l~~~~~~~l~~-~~G~i~vd~~~~Ts~~gVfAaGD~~~~~~ 582 (604)
T PRK13984 504 VEVFDEEGRFNPKFDESDQIIVEADMVVEAIGQAPDYSYLPEELKSKLEF-VRGRILTNEYGQTSIPWLFAGGDIVHGPD 582 (604)
T ss_pred eeccCCCCCccceecCCceEEEECCEEEEeeCCCCChhhhhhhhccCccc-cCCeEEeCCCCccCCCCEEEecCcCCchH
Confidence 0 01345689999999999999999875311 124555 46889999999999999999999998874
Q ss_pred cHHHHHHHHHHHHHHhh
Q psy14927 1055 LAHKAEDEGIVCVEGIA 1071 (1074)
Q Consensus 1055 ~~~~A~~~G~~aA~~I~ 1071 (1074)
...|+.+|+.||.+|.
T Consensus 583 -~v~Ai~~G~~AA~~I~ 598 (604)
T PRK13984 583 -IIHGVADGYWAAEGID 598 (604)
T ss_pred -HHHHHHHHHHHHHHHH
Confidence 5789999999999985
No 78
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=1.2e-20 Score=198.97 Aligned_cols=262 Identities=21% Similarity=0.258 Sum_probs=190.3
Q ss_pred hhhhhhccccchHHHHHHHhh----hhhhhcccccccc----chhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEee-eEE
Q psy14927 795 QVVLNTLGNCAAVQANYHLAT----KLFTQAGDKGVKL----NLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNG-HGK 865 (1074)
Q Consensus 795 ~~VviiGgG~AGl~aA~~la~----~l~e~~~~~g~~~----~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g-~v~ 865 (1074)
.+|+|+||||||-+||++.+| |-+- ..+.||++ ...++.+-....-..+...+.+..+.+.|+++.. +++
T Consensus 212 yDVLvVGgGPAgaaAAiYaARKGiRTGl~-aerfGGQvldT~~IENfIsv~~teGpkl~~ale~Hv~~Y~vDimn~qra~ 290 (520)
T COG3634 212 YDVLVVGGGPAGAAAAIYAARKGIRTGLV-AERFGGQVLDTMGIENFISVPETEGPKLAAALEAHVKQYDVDVMNLQRAS 290 (520)
T ss_pred ceEEEEcCCcchhHHHHHHHhhcchhhhh-hhhhCCeeccccchhheeccccccchHHHHHHHHHHhhcCchhhhhhhhh
Confidence 349999999999999999999 2111 23445543 3444444333333456666788888889998877 555
Q ss_pred EecC-----CeEEEEeCCCCeeEEEcCeEEEccCCCCC--CCCCCCCC---Cc-ceechhhHhcchH-------------
Q psy14927 866 ITGP-----NTVTVIKSDGSTEEVKTKNILIATGSEVT--PFPGIEVD---EE-TIVSSTGALSLKK------------- 921 (1074)
Q Consensus 866 ~id~-----~~~~v~~~~G~~~~i~~d~lIIATG~~p~--~ipgi~~~---~~-~v~t~~~~~~~~~------------- 921 (1074)
.+.+ +..+|++++| -.+.++.+|||||++-+ .+||-... +. +|-+|+.-+...+
T Consensus 291 ~l~~a~~~~~l~ev~l~nG--avLkaktvIlstGArWRn~nvPGE~e~rnKGVayCPHCDGPLF~gK~VAVIGGGNSGvE 368 (520)
T COG3634 291 KLEPAAVEGGLIEVELANG--AVLKARTVILATGARWRNMNVPGEDEYRNKGVAYCPHCDGPLFKGKRVAVIGGGNSGVE 368 (520)
T ss_pred cceecCCCCccEEEEecCC--ceeccceEEEecCcchhcCCCCchHHHhhCCeeeCCCCCCcccCCceEEEECCCcchHH
Confidence 5544 4688999999 68999999999999754 45653211 11 2335555443333
Q ss_pred -hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHH-hCCCEEEeCceEEEEEecCCe-EEEEEeeccCCCCceEEE
Q psy14927 922 -GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILG-KQGMQFKLGTKVTGASKSGDN-ITVTIENVKDPTKKEELS 998 (1074)
Q Consensus 922 -A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~-~~gV~i~~~~~v~~i~~~~~~-~~v~~~~~~~~g~~~~i~ 998 (1074)
|..|+-.-..||+++-.+.+. ....+++.|. -.+|.++++...++|.++++. ..+.+.+.. +|+...++
T Consensus 369 AAIDLAGiv~hVtllEF~~eLk-------AD~VLq~kl~sl~Nv~ii~na~Ttei~Gdg~kV~Gl~Y~dr~-sge~~~l~ 440 (520)
T COG3634 369 AAIDLAGIVEHVTLLEFAPELK-------ADAVLQDKLRSLPNVTIITNAQTTEVKGDGDKVTGLEYRDRV-SGEEHHLE 440 (520)
T ss_pred HHHhHHhhhheeeeeecchhhh-------hHHHHHHHHhcCCCcEEEecceeeEEecCCceecceEEEecc-CCceeEEE
Confidence 555555556899998766654 2334455554 358999999999999998655 456777665 78888899
Q ss_pred cCEEEEccCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEEecccCCCC-CcHHHHHHHHHHHHHHh
Q psy14927 999 CDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGP-MLAHKAEDEGIVCVEGI 1070 (1074)
Q Consensus 999 ~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~~~~-~~~~~A~~~G~~aA~~I 1070 (1074)
-+-|++-+|..||++| ++.. +++++.|-|.||....||+|||||+|||+..| +++..|+.+|..|+-+.
T Consensus 441 LeGvFVqIGL~PNT~W--Lkg~-vel~~rGEIivD~~g~TsvpGvFAAGD~T~~~yKQIIIamG~GA~AaL~A 510 (520)
T COG3634 441 LEGVFVQIGLLPNTEW--LKGA-VELNRRGEIIVDARGETNVPGVFAAGDCTTVPYKQIIIAMGEGAKASLSA 510 (520)
T ss_pred eeeeEEEEecccChhH--hhch-hhcCcCccEEEecCCCcCCCceeecCcccCCccceEEEEecCcchhhhhh
Confidence 9999999999999999 4555 89999999999999999999999999999864 46777788877777654
No 79
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.80 E-value=1.5e-18 Score=223.01 Aligned_cols=254 Identities=17% Similarity=0.117 Sum_probs=172.1
Q ss_pred hhhhhhccccchHHHHHHHhh-----hhhhhccccccccchhhh-hhhhhHHHhhhhhhHHHHhhhC-CeEEEee-eEEE
Q psy14927 795 QVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLETM-MGTKSAAVKALTGGIAHLFKSN-KVTQLNG-HGKI 866 (1074)
Q Consensus 795 ~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~~~-~~~~~~~~~~l~~~~~~~l~~~-gV~~~~g-~v~~ 866 (1074)
.+|+|||||||||+||+++++ +++|+.+..|+++..... ..... ..++.....+.+... +|+++.+ +|..
T Consensus 164 ~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~~~~~~~g~~--~~~~~~~~~~~l~~~~~v~v~~~t~V~~ 241 (985)
T TIGR01372 164 CDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLSEAETIDGKP--AADWAAATVAELTAMPEVTLLPRTTAFG 241 (985)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeeccccccCCcc--HHHHHHHHHHHHhcCCCcEEEcCCEEEE
Confidence 459999999999999999999 899998888887754321 11111 123333455556555 5999987 5666
Q ss_pred ecCCeEEEEe---C-------C----CCeeEEEcCeEEEccCCCCC--CCCCCCCCCcceechhhHh---cc------hH
Q psy14927 867 TGPNTVTVIK---S-------D----GSTEEVKTKNILIATGSEVT--PFPGIEVDEETIVSSTGAL---SL------KK 921 (1074)
Q Consensus 867 id~~~~~v~~---~-------~----G~~~~i~~d~lIIATG~~p~--~ipgi~~~~~~v~t~~~~~---~~------~~ 921 (1074)
+......... . + +...++.||+||||||+.|. ++||+ +.+.+++..... .. +.
T Consensus 242 i~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILATGa~~r~~pipG~--~~pgV~~~~~~~~~l~~~~~~~gk~ 319 (985)
T TIGR01372 242 YYDHNTVGALERVTDHLDAPPKGVPRERLWRIRAKRVVLATGAHERPLVFANN--DRPGVMLAGAARTYLNRYGVAPGKR 319 (985)
T ss_pred EecCCeEEEEEEeeeccccccCCccccceEEEEcCEEEEcCCCCCcCCCCCCC--CCCCcEEchHHHHHHHhhCcCCCCe
Confidence 6543211111 0 1 11136899999999999874 34554 334455442222 11 11
Q ss_pred -------------hhHHhhcCC-cEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEEee
Q psy14927 922 -------------GSVWGRLGA-EVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIEN 987 (1074)
Q Consensus 922 -------------A~~l~~~G~-~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~ 987 (1074)
|..|.+.|. .|+|+++.+.+. ..+.+.|++.||++++++.+.++.+++....|++..
T Consensus 320 VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~~~~---------~~l~~~L~~~GV~i~~~~~v~~i~g~~~v~~V~l~~ 390 (985)
T TIGR01372 320 IVVATNNDSAYRAAADLLAAGIAVVAIIDARADVS---------PEARAEARELGIEVLTGHVVAATEGGKRVSGVAVAR 390 (985)
T ss_pred EEEECCCHHHHHHHHHHHHcCCceEEEEccCcchh---------HHHHHHHHHcCCEEEcCCeEEEEecCCcEEEEEEEe
Confidence 788888995 578887664332 345677899999999999999998765444555553
Q ss_pred ccCCCCceEEEcCEEEEccCCcccCCccCccccCcc--cCCC--CCeeeCCCCCCCCCCEEEecccCCCCCcHHHHHHHH
Q psy14927 988 VKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIE--KDEK--GRVPVNSRFQTVIPNIFAIGDCIHGPMLAHKAEDEG 1063 (1074)
Q Consensus 988 ~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~--ld~~--G~I~Vd~~~~ts~~~IyAiGD~~~~~~~~~~A~~~G 1063 (1074)
. ++.+++++||.|++++|++||+++ +..+|++ +++. +++. .|++|+||++||+++.. .+..|+.+|
T Consensus 391 ~--~g~~~~i~~D~V~va~G~~Pnt~L--~~~lg~~~~~~~~~~~~~~-----~t~v~gVyaaGD~~g~~-~~~~A~~eG 460 (985)
T TIGR01372 391 N--GGAGQRLEADALAVSGGWTPVVHL--FSQRGGKLAWDAAIAAFLP-----GDAVQGCILAGAANGLF-GLAAALADG 460 (985)
T ss_pred c--CCceEEEECCEEEEcCCcCchhHH--HHhcCCCeeeccccCceec-----CCCCCCeEEeeccCCcc-CHHHHHHHH
Confidence 1 245678999999999999999997 4444443 3332 2221 37899999999988655 677899999
Q ss_pred HHHHHHhh
Q psy14927 1064 IVCVEGIA 1071 (1074)
Q Consensus 1064 ~~aA~~I~ 1071 (1074)
..||..|+
T Consensus 461 ~~Aa~~i~ 468 (985)
T TIGR01372 461 AAAGAAAA 468 (985)
T ss_pred HHHHHHHH
Confidence 99999885
No 80
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=99.75 E-value=3e-17 Score=193.53 Aligned_cols=262 Identities=24% Similarity=0.288 Sum_probs=186.1
Q ss_pred hhhhccccchHHHHHHHhh-------hhhhhccccc--cccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEee-eEEE
Q psy14927 797 VLNTLGNCAAVQANYHLAT-------KLFTQAGDKG--VKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNG-HGKI 866 (1074)
Q Consensus 797 VviiGgG~AGl~aA~~la~-------~l~e~~~~~g--~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g-~v~~ 866 (1074)
++|+|+|++|+++|..+.+ +++....... .......+..... ....+..... .....++++..+ +|+.
T Consensus 1 ivivG~g~aG~~aa~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~i~~~~~~~v~~ 78 (415)
T COG0446 1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPKYSYYRCPLSLYVGGGIA-SLEDLRYPPR-FNRATGIDVRTGTEVTS 78 (415)
T ss_pred CEEECCcHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCCCCccchHHhcccC-CHHHhcccch-hHHhhCCEEeeCCEEEE
Confidence 5789999999999999887 2222222111 1111111111111 1122222222 224668999888 5999
Q ss_pred ecCCeEEEEeCCCCeeEEEcCeEEEccCCCCCCCCCCCCCCccee-chhhHhcchH--------------------hhHH
Q psy14927 867 TGPNTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGIEVDEETIV-SSTGALSLKK--------------------GSVW 925 (1074)
Q Consensus 867 id~~~~~v~~~~G~~~~i~~d~lIIATG~~p~~ipgi~~~~~~v~-t~~~~~~~~~--------------------A~~l 925 (1074)
+|+....+.+.+| ++.||+||||||++|...|+......+.. +..+...... |..+
T Consensus 79 id~~~~~v~~~~g---~~~yd~LvlatGa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vvG~G~~gle~A~~~ 155 (415)
T COG0446 79 IDPENKVVLLDDG---EIEYDYLVLATGARPRPPPISDWEGVVTLRLREDAEALKGGAEPPKDVVVVGAGPIGLEAAEAA 155 (415)
T ss_pred ecCCCCEEEECCC---cccccEEEEcCCCcccCCCccccCceEEECCHHHHHHHHHHHhccCeEEEECCcHHHHHHHHHH
Confidence 9999999999888 89999999999999865552221212221 3333332221 8888
Q ss_pred hhcCCcEEEEecCCccCCCCCC-HHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEE---EEEeeccCCCCceEEEcCE
Q psy14927 926 GRLGAEVTAIEFMNAIGGMGID-GEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNIT---VTIENVKDPTKKEELSCDA 1001 (1074)
Q Consensus 926 ~~~G~~Vtlv~~~~~~~~~~~~-~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~---v~~~~~~~~g~~~~i~~D~ 1001 (1074)
++.|++||+++..++++ +.+. +++.+.+.+.+++.||+++++..+.+|+..++... +... .+..+++|.
T Consensus 156 ~~~G~~v~l~e~~~~~~-~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~------~~~~~~~d~ 228 (415)
T COG0446 156 AKRGKKVTLIEAADRLG-GQLLDPEVAEELAELLEKYGVELLLGTKVVGVEGKGNTLVVERVVGI------DGEEIKADL 228 (415)
T ss_pred HHcCCeEEEEEcccccc-hhhhhHHHHHHHHHHHHHCCcEEEeCCceEEEEcccCcceeeEEEEe------CCcEEEeeE
Confidence 99999999999999998 5565 88999999999999999999999999998655432 2222 257899999
Q ss_pred EEEccCCcccCCccCccccC-cccCCCCCeeeCCCCCCC-CCCEEEecccCCCC----------CcHHHHHHHHHHHHHH
Q psy14927 1002 LLVCVGRRPYTHNLGLEEIG-IEKDEKGRVPVNSRFQTV-IPNIFAIGDCIHGP----------MLAHKAEDEGIVCVEG 1069 (1074)
Q Consensus 1002 vi~a~G~~p~~~~l~l~~~g-l~ld~~G~I~Vd~~~~ts-~~~IyAiGD~~~~~----------~~~~~A~~~G~~aA~~ 1069 (1074)
+++++|.+||+.+ ....+ .....+|+|.||+.++|+ .++||++|||+..+ ..+..|..++++++.+
T Consensus 229 ~~~~~g~~p~~~l--~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~GD~~~~~~~~~~~~~~~~~~~~a~~~~~i~~~~ 306 (415)
T COG0446 229 VIIGPGERPNVVL--ANDALPGLALAGGAVLVDERGGTSKDPDVYAAGDVAEIPAAETGKGGRIALWAIAVAAGRIAAEN 306 (415)
T ss_pred EEEeecccccHHH--HhhCccceeccCCCEEEccccccCCCCCEEeccceEeeecccCCceeeeechhhHhhhhHHHHHH
Confidence 9999999999765 33433 245677899999999997 99999999987632 2467889999999999
Q ss_pred hhC
Q psy14927 1070 IAG 1072 (1074)
Q Consensus 1070 I~~ 1072 (1074)
+.+
T Consensus 307 ~~~ 309 (415)
T COG0446 307 IAG 309 (415)
T ss_pred hcc
Confidence 875
No 81
>KOG1335|consensus
Probab=99.74 E-value=3.3e-18 Score=183.34 Aligned_cols=157 Identities=49% Similarity=0.668 Sum_probs=136.7
Q ss_pred HhhhhhccccccccccCCceEEeccchhhccHHHH--hcccc------ccccccccccccccccccCCcceEEEEeccCC
Q psy14927 369 VDKYLEMKRNQSFRSSNTDIILPVEKWTLLSLARV--LEGIE------YKVGKFPFAANSRAKTNNDTDGFVKVLGDKLT 440 (1074)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (1074)
.|+-+.+-.+..|+|-=.+||.+||+.-|.-.+-. ++||. ..-+.--+.-+|-+++.+|+.+.|+.++-.
T Consensus 328 ~D~r~rv~v~~~f~t~vP~i~~IGDv~~gpMLAhkAeeegI~~VE~i~g~~~hv~ynciP~v~ythPEvawVG~TEeq-- 405 (506)
T KOG1335|consen 328 LDKRGRVIVNTRFQTKVPHIYAIGDVTLGPMLAHKAEEEGIAAVEGIAGGHGHVDYNCIPSVVYTHPEVAWVGKTEEQ-- 405 (506)
T ss_pred cccccceeccccccccCCceEEecccCCcchhhhhhhhhchhheeeecccCcccccCCCCceeecccceeeeccchhh--
Confidence 46667777888899999999999999877654433 44443 222233455589999999999999988654
Q ss_pred CcccccccccCCCcEEEEeeccCccchhhhcCCCcceEEEEEECCCCcEEEEEEeCCChhHHHHHHHHHHHcCCCHHHHh
Q psy14927 441 DKVLGVHIIGPGIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAMEYGASCEDVA 520 (1074)
Q Consensus 441 ~~~lg~~~~~~g~~~~v~~~~~~~~~ra~~~~~~~G~~Kli~~~~~~~ilG~~iiG~~a~eli~~~a~a~~~~~~~~~l~ 520 (1074)
++++|++|.++++||.++.||.+..+++||+|++.|++|++|||+||+||+|+|||+++.+|+..|.+.+|+.
T Consensus 406 -------lkeegi~y~vgkfpF~aNsRaktn~d~eg~vKvl~d~~tdkiLGvHiigp~AgEli~EA~lAieyGasaeDva 478 (506)
T KOG1335|consen 406 -------LKEEGIKYKVGKFPFSANSRAKTNNDTEGFVKVLADKETDKILGVHIIGPNAGELIHEASLAIEYGASAEDVA 478 (506)
T ss_pred -------HHhcCcceEeeeccccccchhhccCCccceeEEEecCCCCcEEEEEEecCCHHHHHHHHHHHHHhCccHHHHh
Confidence 8889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccCCccccccc
Q psy14927 521 RTCHAHPTVCVEKN 534 (1074)
Q Consensus 521 ~~~~~hPt~s~e~~ 534 (1074)
+..|+|||+||.+.
T Consensus 479 rvchaHPTlSEa~k 492 (506)
T KOG1335|consen 479 RVCHAHPTLSEAFK 492 (506)
T ss_pred hccCCCCcHHHHHH
Confidence 99999999998763
No 82
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=99.72 E-value=8.3e-18 Score=195.13 Aligned_cols=156 Identities=39% Similarity=0.524 Sum_probs=138.0
Q ss_pred HHhhhhhccccccccccC-CceEEeccch-----hhccHHH---Hhccccc-cccccccccccccccccCCcceEEEEec
Q psy14927 368 EVDKYLEMKRNQSFRSSN-TDIILPVEKW-----TLLSLAR---VLEGIEY-KVGKFPFAANSRAKTNNDTDGFVKVLGD 437 (1074)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-----~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (1074)
++++.+.++.| +++||| .+||..||.. .-....| |++++.. ......+..+|.+++.+|+.+.|++++.
T Consensus 285 ~~~~rg~I~VD-~~~~Tnvp~IyA~GDV~~~~~Lah~A~~eg~iaa~~i~g~~~~~~d~~~iP~~ift~Peia~VGlte~ 363 (454)
T COG1249 285 ELDDRGFIKVD-DQMTTNVPGIYAIGDVIGGPMLAHVAMAEGRIAAENIAGGKRTPIDYRLIPSVVFTDPEIASVGLTEE 363 (454)
T ss_pred eECCCCCEEeC-CccccCCCCEEEeeccCCCcccHhHHHHHHHHHHHHHhCCCCCcCcccCCCEEEECCCcceeeeCCHH
Confidence 46677788999 888888 9999999992 2223333 3666664 4445568899999999999999999988
Q ss_pred cCCCcccccccccCCCcEEEEeeccCccchhhhcCCCcceEEEEEECCCCcEEEEEEeCCChhHHHHHHHHHHHcCCCHH
Q psy14927 438 KLTDKVLGVHIIGPGIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAMEYGASCE 517 (1074)
Q Consensus 438 ~~~~~~lg~~~~~~g~~~~v~~~~~~~~~ra~~~~~~~G~~Kli~~~~~~~ilG~~iiG~~a~eli~~~a~a~~~~~~~~ 517 (1074)
. ++++|+++++.+++|..++|+..+++++||+|+++|++|++|||+|++|++|+|||+.+++||++|.++.
T Consensus 364 e---------a~~~g~~~~~~~~~f~~~~ra~~~~~~~G~~Klv~d~~t~~IlGahivg~~A~ElI~~~~~a~~~g~t~~ 434 (454)
T COG1249 364 E---------AKEAGIDYKVGKFPFAANGRAITMGETDGFVKLVVDKETGRILGAHIVGPGASELINEIALAIEMGATAE 434 (454)
T ss_pred H---------HHhcCCceEEEEeecccchhHHhccCCceEEEEEEECCCCeEEEEEEECCCHHHHHHHHHHHHHCCCcHH
Confidence 7 8899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcccCCcccccc
Q psy14927 518 DVARTCHAHPTVCVEK 533 (1074)
Q Consensus 518 ~l~~~~~~hPt~s~e~ 533 (1074)
++..++|+|||++|.+
T Consensus 435 ~~~~~i~~HPT~sE~~ 450 (454)
T COG1249 435 DLALTIHAHPTLSEAL 450 (454)
T ss_pred HHhcCCCCCCChHHHH
Confidence 9999999999999876
No 83
>KOG2041|consensus
Probab=99.70 E-value=3e-15 Score=169.29 Aligned_cols=281 Identities=18% Similarity=0.193 Sum_probs=214.9
Q ss_pred CCHHHHHHHHHHcCcccchh-hhHhhhcHHHHHHHhhcC----CChH---HHHHHHHHHHhccCHHHHHHHHHHhhChhh
Q psy14927 10 GDIDRAIRMFEKAETHQQHV-PRMLLENTDKLEKYIIQS----KDPV---LLKWWAQYIESTEDMDLAMKYYEEARDYLS 81 (1074)
Q Consensus 10 g~~~eA~~~Ye~~~~~~~~~-~~~~~~~~~~~~~~~~~~----~~~~---l~~~~a~~~e~~~~~~~A~~~y~~a~d~~~ 81 (1074)
|+|+||.++|-.+++.|..| .||.+++|+.+-+++... +|.. -|+..|++.-....|++|.++|..++|-.+
T Consensus 748 g~feeaek~yld~drrDLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~ 827 (1189)
T KOG2041|consen 748 GEFEEAEKLYLDADRRDLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTEN 827 (1189)
T ss_pred cchhHhhhhhhccchhhhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHh
Confidence 89999999999999999888 888889999999999983 2322 566779999999999999999999999999
Q ss_pred hhhHhhccCCHHHHHHHHH-hcCChHHHHHHHHHHHhcCChHHHHHHHHHhCChHHHHHHHHHhCchHHHHHHhhhcC--
Q psy14927 82 MVRVLCFLQDFSRAAELAN-ASGDTAAAYHLARQYENSGQFDEAIHFYSVAGSCGNAVRLCKEQALDDQLWNLALSAG-- 158 (1074)
Q Consensus 82 ~vr~l~~~~~~~~a~~i~~-~~~~~~~~~~la~~~~~~g~~~~Ai~~y~~a~~~~~A~~la~~~~~~~~~~~l~~~~~-- 158 (1074)
.+.+|.+++++++.+.+++ -+.+....-.+|.+|...|.+++|++.|.+.+.-..|+.-|+..|+|.+.+.|+....
T Consensus 828 ~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pkaAv~tCv~LnQW~~avelaq~~~l~ 907 (1189)
T KOG2041|consen 828 QIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPKAAVHTCVELNQWGEAVELAQRFQLP 907 (1189)
T ss_pred HHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 9999999999999999998 5778888899999999999999999999999999999999999999999999986633
Q ss_pred c--hhHH-HHHHHHccCChhHHHHHHHHhCChHHHHHHHHhhccCCcchHHHHHHHHHHhcCCChhhHHHhhhhcchHHH
Q psy14927 159 P--SEQI-EAATYLETIEPDKAVLLYHKAGALHKALDLAFKLTLSNSGLVFQIKAMKCLLKSGDTNKIIFFAGVSRMKEI 235 (1074)
Q Consensus 159 ~--~~~~-~~A~~~e~~~~~~A~~ly~kaG~~~kAl~l~~~~~~~~~~~~~~~~a~k~l~~~~~~~~~i~~a~~~r~~~l 235 (1074)
+ .... .+|++++.++..+|+++|.|||++-.|.+|+++.. .+..-+.+..+|-+++
T Consensus 908 qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qma---------------------e~e~~K~~p~lr~Kkl 966 (1189)
T KOG2041|consen 908 QVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMA---------------------EREQEKYVPYLRLKKL 966 (1189)
T ss_pred hHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHh---------------------HHHhhccCCHHHHHHH
Confidence 2 2233 37888899999999999999999999999999953 2234566778999999
Q ss_pred HHHHHHHHhcCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHh-----HHHHhhcCHHHHHHHHHHHHHHHHhcCCCc
Q psy14927 236 YVMAANYLQSSDWKSQPELLKSIISFYSKGKAPHLLANFYVSCAQ-----VEIDEFGNYEKGLGALNEAKRCLLKHNDSM 310 (1074)
Q Consensus 236 ~~~aa~yl~~~~~~~~~~~~~~i~~~Y~k~~~~~~aa~~~~~~a~-----~ei~e~~~y~~a~~~l~~a~~~l~~~~~~~ 310 (1074)
|+++|=..+.- .+.++.+-+-|.+++. ++|....++.+- .+=.-|+-.+ |-..+--|-++|.+. .+
T Consensus 967 YVL~AlLvE~h-----~~~ik~~~~~~~~g~~-~dat~lles~~l~~~~ri~~n~WrgAE-AyHFmilAQrql~eg--~v 1037 (1189)
T KOG2041|consen 967 YVLGALLVENH-----RQTIKELRKIDKHGFL-EDATDLLESGLLAEQSRILENTWRGAE-AYHFMILAQRQLFEG--RV 1037 (1189)
T ss_pred HHHHHHHHHHH-----HHHHHHhhhhhhcCcc-hhhhhhhhhhhhhhHHHHHHhhhhhHH-HHHHHHHHHHHHHhc--hH
Confidence 99988555432 2444555555555444 222222222211 1102333332 233334445555543 45
Q ss_pred hHHHHHHHHH
Q psy14927 311 YETLKSSVVE 320 (1074)
Q Consensus 311 ~~~~~~~~~~ 320 (1074)
+..+.++|.+
T Consensus 1038 ~~Al~Tal~L 1047 (1189)
T KOG2041|consen 1038 KDALQTALIL 1047 (1189)
T ss_pred HHHHHHHhhh
Confidence 5556666665
No 84
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=99.67 E-value=1.1e-16 Score=185.96 Aligned_cols=266 Identities=20% Similarity=0.164 Sum_probs=186.4
Q ss_pred cchhhhhhccccchHHHHHHHhh-----hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEeeeEEEe
Q psy14927 793 QRQVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKIT 867 (1074)
Q Consensus 793 ~k~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~v~~i 867 (1074)
+.++|.|||+||||+++|..|++ ++|+..+..|+.+.+. ++.++. .+++.+...+.+...||+|+.|.....
T Consensus 122 tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~yG-IP~~kl--~k~i~d~~i~~l~~~Gv~~~~~~~vG~ 198 (457)
T COG0493 122 TGKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLYG-IPDFKL--PKDILDRRLELLERSGVEFKLNVRVGR 198 (457)
T ss_pred CCCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEec-Cchhhc--cchHHHHHHHHHHHcCeEEEEcceECC
Confidence 35679999999999999999999 8999999999998777 444432 267788888999999999999954432
Q ss_pred cCCeEEEEeCCCCeeEEEcCeEEEccCCCCC---CCCCCCCCCcceechhhHhcchH-----------------------
Q psy14927 868 GPNTVTVIKSDGSTEEVKTKNILIATGSEVT---PFPGIEVDEETIVSSTGALSLKK----------------------- 921 (1074)
Q Consensus 868 d~~~~~v~~~~G~~~~i~~d~lIIATG~~p~---~ipgi~~~~~~v~t~~~~~~~~~----------------------- 921 (1074)
+.. ++. ..-.||+++++||+.-+ .+||.+ ...+....+++....
T Consensus 199 ~it-----~~~---L~~e~Dav~l~~G~~~~~~l~i~g~d--~~gv~~A~dfL~~~~~~~~~~~~~~~~~~~~gk~vvVI 268 (457)
T COG0493 199 DIT-----LEE---LLKEYDAVFLATGAGKPRPLDIPGED--AKGVAFALDFLTRLNKEVLGDFAEDRTPPAKGKRVVVI 268 (457)
T ss_pred cCC-----HHH---HHHhhCEEEEeccccCCCCCCCCCcC--CCcchHHHHHHHHHHHHHhcccccccCCCCCCCeEEEE
Confidence 211 111 12357999999999632 344432 344554444443222
Q ss_pred ---------hhHHhhcCC-cEEEEecCCcc-CCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCe--EEEEEeec
Q psy14927 922 ---------GSVWGRLGA-EVTAIEFMNAI-GGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDN--ITVTIENV 988 (1074)
Q Consensus 922 ---------A~~l~~~G~-~Vtlv~~~~~~-~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~--~~v~~~~~ 988 (1074)
+....++|. +|+.+.+...- .....+..-.....+.....|+++.+.....++.+++++ ..+.+...
T Consensus 269 GgG~Ta~D~~~t~~r~Ga~~v~~~~~~~~~~~~~~~~~~~~~~~~~~a~eeg~~~~~~~~~~~~~~~e~GrV~~~~~~~~ 348 (457)
T COG0493 269 GGGDTAMDCAGTALRLGAKSVTCFYREDRDDETNEWPTWAAQLEVRSAGEEGVERLPFVQPKAFIGNEGGRVTGVKFGRV 348 (457)
T ss_pred CCCCCHHHHHHHHhhcCCeEEEEeccccccccCCcccccchhhhhhhhhhcCCcccccCCceeEeecCCCcEeeeecccc
Confidence 444455676 67777532222 111111112334456677889999999999999875444 22222110
Q ss_pred ------c---------CCCCceEEEcCEEEEccCCcccCCccCccccCcccCCCCCeeeCCCC-CCCCCCEEEecccCCC
Q psy14927 989 ------K---------DPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRF-QTVIPNIFAIGDCIHG 1052 (1074)
Q Consensus 989 ------~---------~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~-~ts~~~IyAiGD~~~~ 1052 (1074)
+ ..|+...+++|+|+.++|+.|+.........++..+..|.|.+++.+ +||.|+|||.||+.++
T Consensus 349 ~~~~~~~~~~r~~p~~v~gs~~~~~aD~v~~aig~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~ts~~~vfa~gD~~~g 428 (457)
T COG0493 349 EPGEYVDGWGRRGPVGVIGTEKTDAADTVILAIGFEGDATDGLLLEFGLKLDKRGRIKVDENLQQTSIPGVFAGGDAVRG 428 (457)
T ss_pred cccCcccccccccCccccCceEEehHHHHHHHhccCCCcccccccccccccCCCCceecccccccccCCCeeeCceeccc
Confidence 0 03566789999999999999886653233447888999999999988 8999999999999998
Q ss_pred CCcHHHHHHHHHHHHHHhh
Q psy14927 1053 PMLAHKAEDEGIVCVEGIA 1071 (1074)
Q Consensus 1053 ~~~~~~A~~~G~~aA~~I~ 1071 (1074)
..++..|+.+|+.+|..|-
T Consensus 429 ~~~vv~ai~eGr~aak~i~ 447 (457)
T COG0493 429 AALVVWAIAEGREAAKAID 447 (457)
T ss_pred hhhhhhHHhhchHHHHhhh
Confidence 8899999999999998874
No 85
>KOG3851|consensus
Probab=99.67 E-value=1e-16 Score=167.86 Aligned_cols=264 Identities=20% Similarity=0.261 Sum_probs=171.2
Q ss_pred chhhhhhccccchHHHHHHHhh-------hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEeeeEEE
Q psy14927 794 RQVVLNTLGNCAAVQANYHLAT-------KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKI 866 (1074)
Q Consensus 794 k~~VviiGgG~AGl~aA~~la~-------~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~v~~ 866 (1074)
+..|+|+|||.+|+..|..+.+ .++|..+.+..++-|.-+-.+.... +.-.....+ +-..|.+++...|..
T Consensus 39 h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~HyYQPgfTLvGgGl~~l-~~srr~~a~-liP~~a~wi~ekv~~ 116 (446)
T KOG3851|consen 39 HFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAEDHYYQPGFTLVGGGLKSL-DSSRRKQAS-LIPKGATWIKEKVKE 116 (446)
T ss_pred ceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhhcccCcceEEeccchhhh-hhccCcccc-cccCCcHHHHHHHHh
Confidence 4559999999999999999988 4566655555555443222222111 111111111 222366667777888
Q ss_pred ecCCeEEEEeCCCCeeEEEcCeEEEccCCCC--CCCCCCCC--CCccee---c-------hhhHhcchH-----------
Q psy14927 867 TGPNTVTVIKSDGSTEEVKTKNILIATGSEV--TPFPGIEV--DEETIV---S-------STGALSLKK----------- 921 (1074)
Q Consensus 867 id~~~~~v~~~~G~~~~i~~d~lIIATG~~p--~~ipgi~~--~~~~v~---t-------~~~~~~~~~----------- 921 (1074)
.+|+...|.+.+| ++|.||++|||+|... -.|+|+.. +.+.+. + ...+++.++
T Consensus 117 f~P~~N~v~t~gg--~eIsYdylviA~Giql~y~~IkGl~Eal~tP~VcSnYSpkyvdk~y~~~~~fk~GNAIfTfPntp 194 (446)
T KOG3851|consen 117 FNPDKNTVVTRGG--EEISYDYLVIAMGIQLDYGKIKGLVEALDTPGVCSNYSPKYVDKVYKELMNFKKGNAIFTFPNTP 194 (446)
T ss_pred cCCCcCeEEccCC--cEEeeeeEeeeeeceeccchhcChHhhccCCCcccccChHHHHHHHHHHHhccCCceEEecCCCc
Confidence 8999999999999 7899999999999864 24555421 112222 1 111222111
Q ss_pred --------------hhHHhhcCC--cEEEE--ecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEE
Q psy14927 922 --------------GSVWGRLGA--EVTAI--EFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITV 983 (1074)
Q Consensus 922 --------------A~~l~~~G~--~Vtlv--~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v 983 (1074)
-.++++.|+ ++.++ +.-+.++ --....+.+++..++++|++.+...+.+|..++...
T Consensus 195 iKCAGAPQKi~yise~y~Rk~gvRd~a~iiy~Tsl~~iF---gVk~Y~~AL~k~~~~rni~vn~krnLiEV~~~~~~A-- 269 (446)
T KOG3851|consen 195 IKCAGAPQKIMYISESYFRKRGVRDNANIIYNTSLPTIF---GVKHYADALEKVIQERNITVNYKRNLIEVRTNDRKA-- 269 (446)
T ss_pred cccCCCchhhhhhhHHHHHHhCccccccEEEecCcccee---cHHHHHHHHHHHHHhcceEeeeccceEEEeccchhh--
Confidence 455677775 34444 3334443 125577888888899999999999999998765432
Q ss_pred EEeeccCCCCceEEEcCEEEEccCCcccCCccCccccCcccCCCCCeeeC-CCCC-CCCCCEEEecccCCCCCc--HHHH
Q psy14927 984 TIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVN-SRFQ-TVIPNIFAIGDCIHGPML--AHKA 1059 (1074)
Q Consensus 984 ~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd-~~~~-ts~~~IyAiGD~~~~~~~--~~~A 1059 (1074)
.+++.+..|..++++++++-+.+..+++.. +..+.+ .|..||+.|| .++| +.+||||+||||.+.|.. +..+
T Consensus 270 vFe~L~kPG~t~ei~yslLHv~Ppms~pe~---l~~s~~-adktGfvdVD~~TlQs~kypNVFgiGDc~n~PnsKTaAAv 345 (446)
T KOG3851|consen 270 VFENLDKPGVTEEIEYSLLHVTPPMSTPEV---LANSDL-ADKTGFVDVDQSTLQSKKYPNVFGIGDCMNLPNSKTAAAV 345 (446)
T ss_pred HHHhcCCCCceeEEeeeeeeccCCCCChhh---hhcCcc-cCcccceecChhhhccccCCCceeeccccCCCchhhHHHH
Confidence 233332148889999999999888776544 345553 3788999999 5677 589999999999998753 3334
Q ss_pred HHHHHHHHHHh
Q psy14927 1060 EDEGIVCVEGI 1070 (1074)
Q Consensus 1060 ~~~G~~aA~~I 1070 (1074)
..|..++-+|+
T Consensus 346 aaq~~vv~~nl 356 (446)
T KOG3851|consen 346 AAQSPVVDKNL 356 (446)
T ss_pred HhcCchhhhhH
Confidence 45555555554
No 86
>KOG0399|consensus
Probab=99.63 E-value=7.2e-16 Score=181.57 Aligned_cols=267 Identities=16% Similarity=0.147 Sum_probs=168.8
Q ss_pred ccchhhhhhccccchHHHHHHHhh-----hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEeeeEEE
Q psy14927 792 DQRQVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKI 866 (1074)
Q Consensus 792 ~~k~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~v~~ 866 (1074)
.|.++|.|||.|||||+||-.|-+ ++||+.++.||.+.+..+-...+ +.+...-.+++.+.||+|++++-.
T Consensus 1783 rtg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~ygipnmkld---k~vv~rrv~ll~~egi~f~tn~ei- 1858 (2142)
T KOG0399|consen 1783 RTGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMYGIPNMKLD---KFVVQRRVDLLEQEGIRFVTNTEI- 1858 (2142)
T ss_pred ccCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeeecCCccchh---HHHHHHHHHHHHhhCceEEeeccc-
Confidence 357779999999999999999999 89999999999887764443333 235555678888899999999422
Q ss_pred ecCCeEEEEeCCCCeeEEEcCeEEEccCCC-CCCCCCCCCCCcceechhhHhcchH---------hhHHhhcCCcEEEEe
Q psy14927 867 TGPNTVTVIKSDGSTEEVKTKNILIATGSE-VTPFPGIEVDEETIVSSTGALSLKK---------GSVWGRLGAEVTAIE 936 (1074)
Q Consensus 867 id~~~~~v~~~~G~~~~i~~d~lIIATG~~-p~~ipgi~~~~~~v~t~~~~~~~~~---------A~~l~~~G~~Vtlv~ 936 (1074)
..+ +.+ |+ ..-.+|+||+|||++ |+++|.-+.+...+....+++.... ...+...|++|.++.
T Consensus 1859 -gk~---vs~-d~--l~~~~daiv~a~gst~prdlpv~grd~kgv~fame~l~~ntk~lld~~~d~~~~~~~gkkvivig 1931 (2142)
T KOG0399|consen 1859 -GKH---VSL-DE--LKKENDAIVLATGSTTPRDLPVPGRDLKGVHFAMEFLEKNTKSLLDSVLDGNYISAKGKKVIVIG 1931 (2142)
T ss_pred -ccc---ccH-HH--HhhccCeEEEEeCCCCCcCCCCCCccccccHHHHHHHHHhHHhhhccccccceeccCCCeEEEEC
Confidence 211 111 11 234689999999996 5555532234445555555554333 333444577777765
Q ss_pred cCCc--------------------cCC------------CCCCHHHH-HHH-HHHHHhCCCEEEeCce-EEEEEecCCe-
Q psy14927 937 FMNA--------------------IGG------------MGIDGEVA-KQF-QRILGKQGMQFKLGTK-VTGASKSGDN- 980 (1074)
Q Consensus 937 ~~~~--------------------~~~------------~~~~~~~~-~~~-~~~l~~~gV~i~~~~~-v~~i~~~~~~- 980 (1074)
.++. +++ |..+.-++ ++= .+.-+..|-..++-+- .+++.+++++
T Consensus 1932 ggdtg~dcigtsvrhg~~sv~n~ellp~pp~~ra~~npwpqwprvfrvdygh~e~~~~~g~dpr~y~vltk~f~~~~~g~ 2011 (2142)
T KOG0399|consen 1932 GGDTGTDCIGTSVRHGCKSVGNFELLPQPPPERAPDNPWPQWPRVFRVDYGHAEAKEHYGSDPRTYSVLTKRFIGDDNGN 2011 (2142)
T ss_pred CCCccccccccchhhccceecceeecCCCCcccCCCCCCccCceEEEeecchHHHHHHhCCCcceeeeeeeeeeccCCCc
Confidence 4332 110 00000000 000 0111122222221111 1233333222
Q ss_pred ------EEEEEeecc--------CCCCceEEEcCEEEEccCCcccCCccCccccCcccCCCCCeeeC-CCCCCCCCCEEE
Q psy14927 981 ------ITVTIENVK--------DPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVN-SRFQTVIPNIFA 1045 (1074)
Q Consensus 981 ------~~v~~~~~~--------~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd-~~~~ts~~~IyA 1045 (1074)
+.|+++..+ -.+..+.++||+||++.|+..+.... .+..+++.|+++.|.+- +.+.|++++|||
T Consensus 2012 v~gl~~vrvew~k~~~g~w~~~ei~~see~~eadlv~lamgf~gpe~~~-~~~~~~~~d~rsni~t~~~~y~t~v~~vfa 2090 (2142)
T KOG0399|consen 2012 VTGLETVRVEWEKDDKGRWQMKEINNSEEIIEADLVILAMGFVGPEKSV-IEQLNLKTDPRSNILTPKDSYSTDVAKVFA 2090 (2142)
T ss_pred eeeEEEEEEEEEecCCCceEEEEcCCcceeeecceeeeeccccCcchhh-hhhcCcccCccccccCCCccccccccceee
Confidence 334443311 02446789999999999998554443 67889999999888664 678999999999
Q ss_pred ecccCCCCCcHHHHHHHHHHHHHHh
Q psy14927 1046 IGDCIHGPMLAHKAEDEGIVCVEGI 1070 (1074)
Q Consensus 1046 iGD~~~~~~~~~~A~~~G~~aA~~I 1070 (1074)
+|||..+..++.+|+++|+.+|+.+
T Consensus 2091 agdcrrgqslvvwai~egrq~a~~v 2115 (2142)
T KOG0399|consen 2091 AGDCRRGQSLVVWAIQEGRQAARQV 2115 (2142)
T ss_pred cccccCCceEEEEEehhhhHHHHHH
Confidence 9999999889999999999999875
No 87
>PRK14727 putative mercuric reductase; Provisional
Probab=99.63 E-value=6.1e-16 Score=185.17 Aligned_cols=156 Identities=22% Similarity=0.210 Sum_probs=137.4
Q ss_pred HhhhhhccccccccccCCceEEeccchh--------hccHHHHhccccccccccccccccccccccCCcceEEEEeccCC
Q psy14927 369 VDKYLEMKRNQSFRSSNTDIILPVEKWT--------LLSLARVLEGIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLT 440 (1074)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (1074)
+++.+.+..|+++|||..+||..||..- ......|..++......++....|.++..+++.++|++++.+
T Consensus 297 ~~~~G~i~Vd~~~~Ts~~~IyA~GD~~~~~~~~~~A~~~G~~aa~~i~g~~~~~~~~~~p~~~~~~p~ia~vGlte~~-- 374 (479)
T PRK14727 297 TDTSGAIVVNPAMETSAPDIYAAGDCSDLPQFVYVAAAAGSRAGINMTGGNATLDLSAMPAVIFTDPQVATVGLSEAK-- 374 (479)
T ss_pred ecCCCCEEECCCeecCCCCEEEeeecCCcchhhhHHHHHHHHHHHHHcCCCcccccccCCcEEEecCceeeeeCCHHH--
Confidence 5667778999999999999999999842 222333455555545567788899999999999999998777
Q ss_pred CcccccccccCCCcEEEEeeccCccchhhhcCCCcceEEEEEECCCCcEEEEEEeCCChhHHHHHHHHHHHcCCCHHHHh
Q psy14927 441 DKVLGVHIIGPGIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAMEYGASCEDVA 520 (1074)
Q Consensus 441 ~~~lg~~~~~~g~~~~v~~~~~~~~~ra~~~~~~~G~~Kli~~~~~~~ilG~~iiG~~a~eli~~~a~a~~~~~~~~~l~ 520 (1074)
++..|+++.+..+++..++|+...+.+.||+||++|++|++|||+|++|++++|+|+.+++||+.+.|+++|.
T Consensus 375 -------a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~ 447 (479)
T PRK14727 375 -------AHLSGIETISRVLTMENVPRALANFETDGFIKLVAEEGTRKLIGAQILAHEGGELIQSAALAIHNRMTVEELA 447 (479)
T ss_pred -------HHHcCCceEEEEEEcccCchhhhcCCCCeEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHh
Confidence 7788999999999999999999988899999999999999999999999999999999999999999999999
Q ss_pred hhcccCCcccccc
Q psy14927 521 RTCHAHPTVCVEK 533 (1074)
Q Consensus 521 ~~~~~hPt~s~e~ 533 (1074)
+++|+|||++|.+
T Consensus 448 ~~~~~hPt~~E~~ 460 (479)
T PRK14727 448 DQLFPYLTMVEGL 460 (479)
T ss_pred cCCccCCChHHHH
Confidence 9999999999865
No 88
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.62 E-value=9e-16 Score=183.17 Aligned_cols=156 Identities=31% Similarity=0.366 Sum_probs=136.2
Q ss_pred HhhhhhccccccccccCCceEEeccchhh-cc-------HHHHhccccccccccccccccccccccCCcceEEEEeccCC
Q psy14927 369 VDKYLEMKRNQSFRSSNTDIILPVEKWTL-LS-------LARVLEGIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLT 440 (1074)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (1074)
+++.+.+..|+++||++.+||..||..-+ +. ...|..++......++....|.++..+++.++|++++.+
T Consensus 288 ~~~~G~I~Vd~~~~t~~p~VyAiGDv~~~~~la~~A~~eG~~aa~~i~g~~~~~~~~~~p~~~~~~p~ia~vGlte~e-- 365 (471)
T PRK06467 288 VDERGFIRVDKQCRTNVPHIFAIGDIVGQPMLAHKGVHEGHVAAEVIAGKKHYFDPKVIPSIAYTEPEVAWVGLTEKE-- 365 (471)
T ss_pred ECCCCcEeeCCCcccCCCCEEEehhhcCCcccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEECCCceeEEECCHHH--
Confidence 55667788999999999999999997321 11 122345555555567788999999999999999998777
Q ss_pred CcccccccccCCCcEEEEeeccCccchhhhcCCCcceEEEEEECCCCcEEEEEEeCCChhHHHHHHHHHHHcCCCHHHHh
Q psy14927 441 DKVLGVHIIGPGIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAMEYGASCEDVA 520 (1074)
Q Consensus 441 ~~~lg~~~~~~g~~~~v~~~~~~~~~ra~~~~~~~G~~Kli~~~~~~~ilG~~iiG~~a~eli~~~a~a~~~~~~~~~l~ 520 (1074)
++..|+++.+..+++..++|+...+.++||+|+++|++|++|||+|++|++++|+|+.+++||+.+.|+.+|.
T Consensus 366 -------a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~t~~ilG~~~vg~~a~e~i~~~a~ai~~~~t~~~l~ 438 (471)
T PRK06467 366 -------AKEEGIEYETATFPWAASGRAIASDCADGMTKLIFDKETHRVLGGAIVGTNAGELLGEIGLAIEMGCDAEDIA 438 (471)
T ss_pred -------HHhcCCCeEEEEEecCcchhhhhCCCCceEEEEEEECCCCeEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHh
Confidence 7778999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccCCcccccc
Q psy14927 521 RTCHAHPTVCVEK 533 (1074)
Q Consensus 521 ~~~~~hPt~s~e~ 533 (1074)
+++++|||+++.+
T Consensus 439 ~~~~~hPt~~e~~ 451 (471)
T PRK06467 439 LTIHAHPTLHESV 451 (471)
T ss_pred hcccCCCChHHHH
Confidence 9999999999765
No 89
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=99.62 E-value=6.9e-16 Score=184.55 Aligned_cols=156 Identities=19% Similarity=0.181 Sum_probs=135.9
Q ss_pred HhhhhhccccccccccCCceEEeccchhh--------ccHHHHhccccccccccccccccccccccCCcceEEEEeccCC
Q psy14927 369 VDKYLEMKRNQSFRSSNTDIILPVEKWTL--------LSLARVLEGIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLT 440 (1074)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (1074)
+++++.+..|..+||+..+||..||..-+ .....|..++.......++..+|.+++..|+.++|++++.+
T Consensus 286 ~~~~G~i~vd~~~~t~~~~IyAiGD~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~i~~~p~ia~vG~te~~-- 363 (461)
T PRK05249 286 ADSRGQLKVNENYQTAVPHIYAVGDVIGFPSLASASMDQGRIAAQHAVGEATAHLIEDIPTGIYTIPEISSVGKTEQE-- 363 (461)
T ss_pred ecCCCcEeeCCCcccCCCCEEEeeecCCCcccHhHHHHHHHHHHHHHcCCCcccccCCCCeEEECCCcceEecCCHHH--
Confidence 56778889999999999999999997421 12223355555444456778899999999999999998877
Q ss_pred CcccccccccCCCcEEEEeeccCccchhhhcCCCcceEEEEEECCCCcEEEEEEeCCChhHHHHHHHHHHHcCCCHHHHh
Q psy14927 441 DKVLGVHIIGPGIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAMEYGASCEDVA 520 (1074)
Q Consensus 441 ~~~lg~~~~~~g~~~~v~~~~~~~~~ra~~~~~~~G~~Kli~~~~~~~ilG~~iiG~~a~eli~~~a~a~~~~~~~~~l~ 520 (1074)
++..|+++.+...+|..++|+...+.+.||+|+++|++|++|||+|++|++|+|+|+.+++||+.+.|+.+|.
T Consensus 364 -------a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~ 436 (461)
T PRK05249 364 -------LTAAKVPYEVGRARFKELARAQIAGDNVGMLKILFHRETLEILGVHCFGERATEIIHIGQAIMEQKGTIEYFV 436 (461)
T ss_pred -------HHHcCCCeEEEEEccccccceeecCCCCcEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHh
Confidence 7778999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccCCcccccc
Q psy14927 521 RTCHAHPTVCVEK 533 (1074)
Q Consensus 521 ~~~~~hPt~s~e~ 533 (1074)
+++|+|||+++..
T Consensus 437 ~~~~~~Pt~~e~~ 449 (461)
T PRK05249 437 NTTFNYPTMAEAY 449 (461)
T ss_pred cCccCCCCHHHHH
Confidence 9999999999765
No 90
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=99.62 E-value=7.9e-15 Score=173.08 Aligned_cols=250 Identities=14% Similarity=0.125 Sum_probs=160.2
Q ss_pred chhhhhhccccchHHHHHHHhh-----hhhhhccccccccchhh------------------------------------
Q psy14927 794 RQVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLET------------------------------------ 832 (1074)
Q Consensus 794 k~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~~------------------------------------ 832 (1074)
.++|+||||||+||.||.+|.+ ++||+.+..||.+.+..
T Consensus 10 ~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~~m~f~ 89 (461)
T PLN02172 10 SQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPRECMGYR 89 (461)
T ss_pred CCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHhhccCC
Confidence 4559999999999999999998 89999998888764421
Q ss_pred -hhhhh-----------hHHHhhhhhhHHHHhhhCCeE--EEee-eEEEecC--CeEEEEeCCC--CeeEEEcCeEEEcc
Q psy14927 833 -MMGTK-----------SAAVKALTGGIAHLFKSNKVT--QLNG-HGKITGP--NTVTVIKSDG--STEEVKTKNILIAT 893 (1074)
Q Consensus 833 -~~~~~-----------~~~~~~l~~~~~~~l~~~gV~--~~~g-~v~~id~--~~~~v~~~~G--~~~~i~~d~lIIAT 893 (1074)
++... .....++..++..+...+|+. +.++ +|+.+++ +.++|++.++ ...+..||+|||||
T Consensus 90 dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~w~V~~~~~~~~~~~~~~d~VIvAt 169 (461)
T PLN02172 90 DFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVDGKWRVQSKNSGGFSKDEIFDAVVVCN 169 (461)
T ss_pred CCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecCCeEEEEEEcCCCceEEEEcCEEEEec
Confidence 00000 001245667788888888987 7777 6877764 4567766543 22357899999999
Q ss_pred C--CCC--CCCCCCCCCCcceechhhHhc-----chH-------------hhHHhhcCCcEEEEecCCccCCCCCCHHHH
Q psy14927 894 G--SEV--TPFPGIEVDEETIVSSTGALS-----LKK-------------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVA 951 (1074)
Q Consensus 894 G--~~p--~~ipgi~~~~~~v~t~~~~~~-----~~~-------------A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~ 951 (1074)
| +.| +.+||+......++++.++.. .+. |..|...+++|++++|+..+. . .
T Consensus 170 G~~~~P~~P~ipG~~~f~G~~iHs~~yr~~~~~~gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~~~~-~-~----- 242 (461)
T PLN02172 170 GHYTEPNVAHIPGIKSWPGKQIHSHNYRVPDPFKNEVVVVIGNFASGADISRDIAKVAKEVHIASRASESD-T-Y----- 242 (461)
T ss_pred cCCCCCcCCCCCCcccCCceEEEecccCCccccCCCEEEEECCCcCHHHHHHHHHHhCCeEEEEEeecccc-c-c-----
Confidence 9 455 244554321222333333322 111 778888899999999876432 0 0
Q ss_pred HHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccCCcccCCccCccccCcccCCCCCee
Q psy14927 952 KQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVP 1031 (1074)
Q Consensus 952 ~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~ 1031 (1074)
..+.....++..+..|..+.+++ .|.+.| | +.+++|.||+|||++|+.+++ .. .|.|.
T Consensus 243 ----~~~~~~~~~v~~~~~I~~~~~~g---~V~f~D----G--~~~~~D~Ii~~TGy~~~~pfL--~~-------~~~i~ 300 (461)
T PLN02172 243 ----EKLPVPQNNLWMHSEIDTAHEDG---SIVFKN----G--KVVYADTIVHCTGYKYHFPFL--ET-------NGYMR 300 (461)
T ss_pred ----ccCcCCCCceEECCcccceecCC---eEEECC----C--CCccCCEEEECCcCCcccccc--Cc-------cccee
Confidence 11112234455566677665432 366666 3 468899999999999999984 32 23344
Q ss_pred eCCC---------CCCC-CCCEEEecccCCCCCcHHHHHHHHHHHHHHhhCC
Q psy14927 1032 VNSR---------FQTV-IPNIFAIGDCIHGPMLAHKAEDEGIVCVEGIAGD 1073 (1074)
Q Consensus 1032 Vd~~---------~~ts-~~~IyAiGD~~~~~~~~~~A~~~G~~aA~~I~~~ 1073 (1074)
+|++ +-.. .|+++.+|=...+. ....+..|++.+|.-+.|.
T Consensus 301 v~~~~v~~Ly~~~f~~~~~p~LafiG~~~~~~-~f~~~E~Qa~~~a~v~sG~ 351 (461)
T PLN02172 301 IDENRVEPLYKHVFPPALAPGLSFIGLPAMGI-QFVMFEIQSKWVAAVLSGR 351 (461)
T ss_pred eCCCcchhhHHhhcCCCCCCcEEEEecccccc-CchhHHHHHHHHHHHHcCC
Confidence 4422 1233 48999999653333 3566788888888877653
No 91
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.62 E-value=9.1e-16 Score=183.38 Aligned_cols=156 Identities=26% Similarity=0.361 Sum_probs=134.8
Q ss_pred HhhhhhccccccccccCCceEEeccchhhc--------cHHHHhcccccccc-cc-ccccccccccccCCcceEEEEecc
Q psy14927 369 VDKYLEMKRNQSFRSSNTDIILPVEKWTLL--------SLARVLEGIEYKVG-KF-PFAANSRAKTNNDTDGFVKVLGDK 438 (1074)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~ 438 (1074)
+++.+.++.|+++|||+.+||..||...+. ....|..++..... .+ ++..+|.++..+|+.++|++++.+
T Consensus 287 ~~~~g~i~vd~~~~Ts~p~IyAiGD~~~~~~l~~~A~~~g~~aa~~i~g~~~~~~~~~~~~p~~~~~~p~~a~vGlte~~ 366 (466)
T PRK07818 287 LTDRGAIAIDDYMRTNVPHIYAIGDVTAKLQLAHVAEAQGVVAAETIAGAETLELGDYRMMPRATFCQPQVASFGLTEEQ 366 (466)
T ss_pred ECCCCcEeeCCCcccCCCCEEEEeecCCCcccHhHHHHHHHHHHHHHcCCCCCccCccCCCCeEEECCCCeEEEeCCHHH
Confidence 456677889999999999999999984332 22233555543322 23 567899999999999999998887
Q ss_pred CCCcccccccccCCCcEEEEeeccCccchhhhcCCCcceEEEEEECCCCcEEEEEEeCCChhHHHHHHHHHHHcCCCHHH
Q psy14927 439 LTDKVLGVHIIGPGIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAMEYGASCED 518 (1074)
Q Consensus 439 ~~~~~lg~~~~~~g~~~~v~~~~~~~~~ra~~~~~~~G~~Kli~~~~~~~ilG~~iiG~~a~eli~~~a~a~~~~~~~~~ 518 (1074)
++..|+++.+..++|..++|+...+.+.||+|+++|++|++|||+|++|++++|+|+.+++|++.+.|+.+
T Consensus 367 ---------a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~Klv~~~~~~~ilG~~~vg~~a~e~i~~~~~ai~~~~t~~~ 437 (466)
T PRK07818 367 ---------AREEGYDVKVAKFPFTANGKAHGLGDPTGFVKLVADAKYGELLGGHLIGPDVSELLPELTLAQKWDLTAEE 437 (466)
T ss_pred ---------HHhCCCcEEEEEEECCccchhhhcCCCCeEEEEEEECCCCeEEEEEEECCCHHHHHHHHHHHHHcCCCHHH
Confidence 77789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcccCCcccccc
Q psy14927 519 VARTCHAHPTVCVEK 533 (1074)
Q Consensus 519 l~~~~~~hPt~s~e~ 533 (1074)
|.+++|+|||++|.+
T Consensus 438 l~~~~~~hPt~~e~~ 452 (466)
T PRK07818 438 LARNVHTHPTLSEAL 452 (466)
T ss_pred HhcCccCCCchHHHH
Confidence 999999999999865
No 92
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=99.62 E-value=5.6e-15 Score=163.21 Aligned_cols=268 Identities=15% Similarity=0.203 Sum_probs=172.2
Q ss_pred hhhhhhccccchHHHHHHHhh-----hhhhhcccccccc-chhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEee-eEEEe
Q psy14927 795 QVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKL-NLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNG-HGKIT 867 (1074)
Q Consensus 795 ~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~-~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g-~v~~i 867 (1074)
+.|+|||||+||++||+.|+. .++|+.+..||.+ .+....+..+-..--+...+.+.-...+|++++. +|..+
T Consensus 125 ~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGrmak~~k~FP~~dcs~C~LaP~m~~v~~hp~i~l~TyaeV~ev 204 (622)
T COG1148 125 KSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRMAKLNKTFPTNDCSICILAPKMVEVSNHPNIELITYAEVEEV 204 (622)
T ss_pred cceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccccHHhhhccCCCcccchhhccchhhhhccCCceeeeeeeeeeee
Confidence 349999999999999999999 7999999999875 2333333322221222233344444445555554 33332
Q ss_pred cC--CeEEE-----------------------------------------------------------------------
Q psy14927 868 GP--NTVTV----------------------------------------------------------------------- 874 (1074)
Q Consensus 868 d~--~~~~v----------------------------------------------------------------------- 874 (1074)
+. ++++|
T Consensus 205 ~G~vGnF~vki~kkpryVdd~CtgCg~C~~vCPve~~nefn~Gl~~~kAiy~p~~qaVp~~~~Id~~~c~~c~~C~~ac~ 284 (622)
T COG1148 205 SGSVGNFTVKIEKKPRYVDDKCTGCGACSEVCPVEVPNEFNEGLGKRKAIYIPFPQAVPLNYNIDPKHCIECGLCEKACP 284 (622)
T ss_pred cccccceEEEEecccccccccccccccccccCCcccCcccccccccceeeeccchhhcccccccChhhhccchhhhhcCC
Confidence 21 11111
Q ss_pred ----Ee-CCCCeeEEEcCeEEEccCCCCCCC---CCCC-CCCcceechhhHhcchH------------------------
Q psy14927 875 ----IK-SDGSTEEVKTKNILIATGSEVTPF---PGIE-VDEETIVSSTGALSLKK------------------------ 921 (1074)
Q Consensus 875 ----~~-~~G~~~~i~~d~lIIATG~~p~~i---pgi~-~~~~~v~t~~~~~~~~~------------------------ 921 (1074)
.+ .+++..+++...+|+|||-.+.+. +..+ +..++++|..++..+..
T Consensus 285 ~~av~~~q~~e~ve~~vGaIIvAtGy~~~Da~~k~EyGYG~~~nVIT~lElErml~~~GPT~GkvlrpSdg~~pKrVaFI 364 (622)
T COG1148 285 NEAVDLNQEPEEVELEVGAIIVATGYKPFDATRKEEYGYGKYPNVITNLELERMLNPNGPTGGKVLRPSDGKPPKRVAFI 364 (622)
T ss_pred ccccccCCCCcEEEEEeceEEEEccccccCcchhhhcCCCCCcchhhHHHHHHHhccCCCCCceEEecCCCCCCceEEEE
Confidence 11 123445789999999999876321 1110 11233444444433221
Q ss_pred --------------------------hhHHhhc--CCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEE
Q psy14927 922 --------------------------GSVWGRL--GAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTG 973 (1074)
Q Consensus 922 --------------------------A~~l~~~--G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~ 973 (1074)
|...++. ..+|++.+.+-+- ++....+...+.-++.||+++.+ ++.+
T Consensus 365 qCVGSRD~~~~n~YCSrvCCm~slKqA~~Ike~~Pd~~v~I~YmDiRa----fG~~yEefY~~~Q~~~gV~fIRG-rvae 439 (622)
T COG1148 365 QCVGSRDFQVGNPYCSRVCCMVSLKQAQLIKERYPDTDVTIYYMDIRA----FGKDYEEFYVRSQEDYGVRFIRG-RVAE 439 (622)
T ss_pred EEecCcCcccCChhhHHHHHHHHHhhhhhhhhcCCCcceeEEEEEeec----cCccHHHHHHhhhhhhchhhhcC-ChHH
Confidence 4444444 3578888766443 33334455555555889999987 5777
Q ss_pred EEecCCe-EEEEEeeccCCCCceEEEcCEEEEccCCcccCCccC-ccccCcccCCCCCeeeC-CCCC---CCCCCEEEec
Q psy14927 974 ASKSGDN-ITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLG-LEEIGIEKDEKGRVPVN-SRFQ---TVIPNIFAIG 1047 (1074)
Q Consensus 974 i~~~~~~-~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~-l~~~gl~ld~~G~I~Vd-~~~~---ts~~~IyAiG 1047 (1074)
|...+++ +.|..+|+. .|+..++++|+|++++|..|....-. ...+|+..+++||+... +.++ |+.+|||.+|
T Consensus 440 i~e~p~~~l~V~~EdTl-~g~~~e~~~DLVVLa~Gmep~~g~~kia~iLgL~~~~~gF~k~~hPkl~pv~s~~~GIflAG 518 (622)
T COG1148 440 IAEFPKKKLIVRVEDTL-TGEVKEIEADLVVLATGMEPSEGAKKIAKILGLSQDEDGFLKEAHPKLRPVDSNRDGIFLAG 518 (622)
T ss_pred heeCCCCeeEEEEEecc-CccceecccceEEEeeccccCcchHHHHHhcCcccCCCCccccCCCCcccccccCCcEEEee
Confidence 7765554 577778766 67788999999999999998554211 45678999999999876 5555 7899999999
Q ss_pred ccCCCCCcHHHHHHHHHHHHHH
Q psy14927 1048 DCIHGPMLAHKAEDEGIVCVEG 1069 (1074)
Q Consensus 1048 D~~~~~~~~~~A~~~G~~aA~~ 1069 (1074)
++.+|+-+..++.||..||..
T Consensus 519 -~aqgPkdI~~siaqa~aAA~k 539 (622)
T COG1148 519 -AAQGPKDIADSIAQAKAAAAK 539 (622)
T ss_pred -cccCCccHHHHHHHhHHHHHH
Confidence 566788888888888877754
No 93
>PRK06370 mercuric reductase; Validated
Probab=99.62 E-value=9.9e-16 Score=183.03 Aligned_cols=156 Identities=26% Similarity=0.250 Sum_probs=135.9
Q ss_pred HhhhhhccccccccccCCceEEeccchhhc--------cHHHHhcccccc-ccccccccccccccccCCcceEEEEeccC
Q psy14927 369 VDKYLEMKRNQSFRSSNTDIILPVEKWTLL--------SLARVLEGIEYK-VGKFPFAANSRAKTNNDTDGFVKVLGDKL 439 (1074)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (1074)
+++.+.++.++.+||+..+||..||..-+. ....|.+++... ...++...+|.++..+++.+++++++.+
T Consensus 285 ~~~~G~i~vd~~l~t~~~~IyAiGD~~~~~~~~~~A~~~g~~aa~ni~~~~~~~~~~~~~p~~~~~~p~ia~vG~te~~- 363 (463)
T PRK06370 285 TDARGYIKVDDQLRTTNPGIYAAGDCNGRGAFTHTAYNDARIVAANLLDGGRRKVSDRIVPYATYTDPPLARVGMTEAE- 363 (463)
T ss_pred ECCCCcEeECcCCcCCCCCEEEeeecCCCcccHHHHHHHHHHHHHHHhCCCCCCcccccCCeEEEcCCCcEeeeCCHHH-
Confidence 566677889999999999999999984322 222335555432 4456677889999999999999998877
Q ss_pred CCcccccccccCCCcEEEEeeccCccchhhhcCCCcceEEEEEECCCCcEEEEEEeCCChhHHHHHHHHHHHcCCCHHHH
Q psy14927 440 TDKVLGVHIIGPGIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAMEYGASCEDV 519 (1074)
Q Consensus 440 ~~~~lg~~~~~~g~~~~v~~~~~~~~~ra~~~~~~~G~~Kli~~~~~~~ilG~~iiG~~a~eli~~~a~a~~~~~~~~~l 519 (1074)
++..|+++.+.+.++..++|+...+.++||+|+++|++|++|||+|++|++++|+|+.+++|++.+.|+++|
T Consensus 364 --------a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l 435 (463)
T PRK06370 364 --------ARKSGRRVLVGTRPMTRVGRAVEKGETQGFMKVVVDADTDRILGATILGVHGDEMIHEILDAMYAGAPYTTL 435 (463)
T ss_pred --------HHHcCCCeEEEEEecCcchhHHhcCCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHH
Confidence 777899999999999999999988999999999999999999999999999999999999999999999999
Q ss_pred hhhcccCCcccccc
Q psy14927 520 ARTCHAHPTVCVEK 533 (1074)
Q Consensus 520 ~~~~~~hPt~s~e~ 533 (1074)
.+++|+|||++|.+
T Consensus 436 ~~~~~~hPt~~e~~ 449 (463)
T PRK06370 436 SRAIHIHPTVSELI 449 (463)
T ss_pred hcCcccCCChHHHH
Confidence 99999999999865
No 94
>PRK14694 putative mercuric reductase; Provisional
Probab=99.61 E-value=1.3e-15 Score=182.01 Aligned_cols=154 Identities=17% Similarity=0.215 Sum_probs=135.1
Q ss_pred hhhhccccccccccCCceEEeccch--------hhccHHHHhccccccccccccccccccccccCCcceEEEEeccCCCc
Q psy14927 371 KYLEMKRNQSFRSSNTDIILPVEKW--------TLLSLARVLEGIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDK 442 (1074)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (1074)
+++.+..|+++|||..+||..||.. +......|..++......+++..+|.++..+++.+.|++++.+
T Consensus 288 ~~G~i~vd~~~~Ts~~~IyA~GD~~~~~~~~~~A~~~G~~aa~~i~~~~~~~~~~~~p~~~~~~p~~a~vGlte~~---- 363 (468)
T PRK14694 288 ERGAIRIDEHLQTTVSGIYAAGDCTDQPQFVYVAAAGGSRAAINMTGGDASLDLSAMPEVIFTDPQVATVGLSEAE---- 363 (468)
T ss_pred CCCeEeeCCCcccCCCCEEEEeecCCCcccHHHHHHHHHHHHHHhcCCCcccccCCCCeEEECCCCeEEeeCCHHH----
Confidence 3566889999999999999999982 2222333455555444556777899999999999999998877
Q ss_pred ccccccccCCCcEEEEeeccCccchhhhcCCCcceEEEEEECCCCcEEEEEEeCCChhHHHHHHHHHHHcCCCHHHHhhh
Q psy14927 443 VLGVHIIGPGIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAMEYGASCEDVART 522 (1074)
Q Consensus 443 ~lg~~~~~~g~~~~v~~~~~~~~~ra~~~~~~~G~~Kli~~~~~~~ilG~~iiG~~a~eli~~~a~a~~~~~~~~~l~~~ 522 (1074)
++..|+++.+..+++..++|++..+.+.||+||++|++|++|||+|++|++++|+|+.+++||+.+.|+++|.++
T Consensus 364 -----a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~ 438 (468)
T PRK14694 364 -----AQAQGYDTDSRTLDLENVPRALVNFDTGGFIKMVAERGSGRLLGVQVVAGEAGELIQTAVMALRARMTVNEIADE 438 (468)
T ss_pred -----HHHcCCceEEEEEecccchhhhhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcc
Confidence 888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCcccccc
Q psy14927 523 CHAHPTVCVEK 533 (1074)
Q Consensus 523 ~~~hPt~s~e~ 533 (1074)
+|+|||++|.+
T Consensus 439 ~~~hPt~~e~~ 449 (468)
T PRK14694 439 LFPYLTMVEGL 449 (468)
T ss_pred ccCCCchHHHH
Confidence 99999999865
No 95
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=99.61 E-value=1.2e-15 Score=182.63 Aligned_cols=156 Identities=37% Similarity=0.531 Sum_probs=135.6
Q ss_pred HhhhhhccccccccccCCceEEeccchhhc--------cHHHHhccccccccccccccccccccccCCcceEEEEeccCC
Q psy14927 369 VDKYLEMKRNQSFRSSNTDIILPVEKWTLL--------SLARVLEGIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLT 440 (1074)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (1074)
+++.+.++.++++||+..+||..||..-+. ....|..++.......++..+|.++..+++.+.|++++.+
T Consensus 298 ~~~~G~i~vd~~~~Ts~~~VyA~GD~~~~~~~~~~A~~~G~~aa~~i~g~~~~~~~~~~p~~~~~~pe~a~vGlte~~-- 375 (475)
T PRK06327 298 LDERGFIPVDDHCRTNVPNVYAIGDVVRGPMLAHKAEEEGVAVAERIAGQKGHIDYNTIPWVIYTSPEIAWVGKTEQQ-- 375 (475)
T ss_pred eCCCCeEeECCCCccCCCCEEEEEeccCCcchHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEeCCcceEEEeCCHHH--
Confidence 566777889999999999999999984321 1223344454433445778899999999999999998776
Q ss_pred CcccccccccCCCcEEEEeeccCccchhhhcCCCcceEEEEEECCCCcEEEEEEeCCChhHHHHHHHHHHHcCCCHHHHh
Q psy14927 441 DKVLGVHIIGPGIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAMEYGASCEDVA 520 (1074)
Q Consensus 441 ~~~lg~~~~~~g~~~~v~~~~~~~~~ra~~~~~~~G~~Kli~~~~~~~ilG~~iiG~~a~eli~~~a~a~~~~~~~~~l~ 520 (1074)
++..|+++.+..+++..++|+..++.+.||+|+++|++|++|||+|++|++++|+|+.+++||+.+.|+++|.
T Consensus 376 -------a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~klv~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~ 448 (475)
T PRK06327 376 -------LKAEGVEYKAGKFPFMANGRALAMGEPDGFVKIIADAKTDEILGVHVIGPNASELIAEAVVAMEFKASSEDIA 448 (475)
T ss_pred -------HHHcCCCEEEEEEcccccchhhhcCCCCeEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHh
Confidence 7788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccCCcccccc
Q psy14927 521 RTCHAHPTVCVEK 533 (1074)
Q Consensus 521 ~~~~~hPt~s~e~ 533 (1074)
+++|+|||+++.+
T Consensus 449 ~~~~~hPt~~e~~ 461 (475)
T PRK06327 449 RICHAHPTLSEVW 461 (475)
T ss_pred cCCcCCCChHHHH
Confidence 9999999999765
No 96
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=99.60 E-value=1.5e-15 Score=180.39 Aligned_cols=156 Identities=20% Similarity=0.197 Sum_probs=133.5
Q ss_pred HhhhhhccccccccccCCceEEeccchhh--------ccHHHHhcccccc-ccccccccccccccccCCcceEEEEeccC
Q psy14927 369 VDKYLEMKRNQSFRSSNTDIILPVEKWTL--------LSLARVLEGIEYK-VGKFPFAANSRAKTNNDTDGFVKVLGDKL 439 (1074)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (1074)
+++++.+..|+++|||+.+||..||..-+ .....|..++... ...+++..+|.+++..|+.++|++++.+
T Consensus 277 ~~~~G~i~vd~~~~Ts~~~IyA~GD~~~~~~l~~~A~~~g~~~a~~i~~~~~~~~~~~~~p~~if~~p~ia~vG~te~~- 355 (446)
T TIGR01424 277 LNDAGAIAVDEYSRTSIPSIYAVGDVTDRINLTPVAIMEATCFANTEFGNNPTKFDHDLIATAVFSQPPLGTVGLTEEE- 355 (446)
T ss_pred ECCCCcEEeCCCCccCCCCEEEeeccCCCccchhHHHHHHHHHHHHHhcCCCCccCcCCCCeEEeCCchhEEEECCHHH-
Confidence 45667788999999999999999998422 1222234455432 2346677999999999999999998877
Q ss_pred CCcccccccccC-CCcEEEEeeccCccchhhhcCCCcceEEEEEECCCCcEEEEEEeCCChhHHHHHHHHHHHcCCCHHH
Q psy14927 440 TDKVLGVHIIGP-GIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAMEYGASCED 518 (1074)
Q Consensus 440 ~~~~lg~~~~~~-g~~~~v~~~~~~~~~ra~~~~~~~G~~Kli~~~~~~~ilG~~iiG~~a~eli~~~a~a~~~~~~~~~ 518 (1074)
++.. ++++.+.+.++..++++...+.++||+||++|++|++|||+|++|++++|+|+.+++||+.+.|+.+
T Consensus 356 --------a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~ 427 (446)
T TIGR01424 356 --------AREKFTGDILVYRAGFRPMKNTFSGRQEKTLMKLVVDEKDDKVLGAHMVGPDAAEIIQGIAIALKMGATKAD 427 (446)
T ss_pred --------HHhhcCCCEEEEEEecCchHhHhhcCCCceEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHH
Confidence 7776 4889999999999999998999999999999999999999999999999999999999999999999
Q ss_pred HhhhcccCCcccccc
Q psy14927 519 VARTCHAHPTVCVEK 533 (1074)
Q Consensus 519 l~~~~~~hPt~s~e~ 533 (1074)
|.+++|+|||++|.+
T Consensus 428 l~~~~~~hPt~~e~~ 442 (446)
T TIGR01424 428 FDSTVGIHPSSAEEF 442 (446)
T ss_pred HhhccccCCChHHHH
Confidence 999999999999765
No 97
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=99.60 E-value=1.7e-15 Score=179.91 Aligned_cols=156 Identities=24% Similarity=0.282 Sum_probs=134.5
Q ss_pred HhhhhhccccccccccCCceEEeccchhh-----ccHHH---Hhccccccc--cccccccccccccccCCcceEEEEecc
Q psy14927 369 VDKYLEMKRNQSFRSSNTDIILPVEKWTL-----LSLAR---VLEGIEYKV--GKFPFAANSRAKTNNDTDGFVKVLGDK 438 (1074)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~---~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (1074)
+++.+.++.|+++|||+.+||..||..-. .-..| |.+++.... ..+++..+|.+++.+++.++|++++.+
T Consensus 279 ~~~~G~i~vd~~~~Ts~~~IyA~GD~~~~~~l~~~A~~~g~~~a~ni~~~~~~~~~~~~~~p~~i~t~p~ia~vGlte~e 358 (452)
T TIGR03452 279 VDEDGRIKVDEYGRTSARGVWALGDVSSPYQLKHVANAEARVVKHNLLHPNDLRKMPHDFVPSAVFTHPQIATVGLTEQE 358 (452)
T ss_pred ECCCCcEeeCCCcccCCCCEEEeecccCcccChhHHHHHHHHHHHHhcCCCCcccCCCCCCCeEEECCCCeeeeeCCHHH
Confidence 56677789999999999999999998422 12222 355554332 246677899999999999999998877
Q ss_pred CCCcccccccccCCCcEEEEeeccCccchhhhcCCCcceEEEEEECCCCcEEEEEEeCCChhHHHHHHHHHHHcCCCHHH
Q psy14927 439 LTDKVLGVHIIGPGIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAMEYGASCED 518 (1074)
Q Consensus 439 ~~~~~lg~~~~~~g~~~~v~~~~~~~~~ra~~~~~~~G~~Kli~~~~~~~ilG~~iiG~~a~eli~~~a~a~~~~~~~~~ 518 (1074)
++..|+++.+...++..+++++.++++.||+||++|++|++|||+|++|++++|+|+.+++||+.+.|+++
T Consensus 359 ---------a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~Klv~d~~t~~ilG~~~vg~~a~e~i~~~~~ai~~~~t~~~ 429 (452)
T TIGR03452 359 ---------AREAGHDITVKIQNYGDVAYGWAMEDTTGFCKLIADRDTGKLLGAHIIGPQASSLIQPLITAMAFGLDARE 429 (452)
T ss_pred ---------HHhcCCCeEEEEecCCchhhHhhcCCCCeEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHH
Confidence 77789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhhh-cccCCcccccc
Q psy14927 519 VART-CHAHPTVCVEK 533 (1074)
Q Consensus 519 l~~~-~~~hPt~s~e~ 533 (1074)
|..+ +++|||+++.+
T Consensus 430 l~~~~~~~hPt~~e~~ 445 (452)
T TIGR03452 430 MARKQYWIHPALPEVV 445 (452)
T ss_pred HhhCCcccCCchHHHH
Confidence 9986 78999999765
No 98
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=99.60 E-value=1.7e-15 Score=179.86 Aligned_cols=156 Identities=18% Similarity=0.173 Sum_probs=135.0
Q ss_pred HhhhhhccccccccccCCceEEeccch-------hhccH-HHHhcccccc-cc-ccccccccccccccCCcceEEEEecc
Q psy14927 369 VDKYLEMKRNQSFRSSNTDIILPVEKW-------TLLSL-ARVLEGIEYK-VG-KFPFAANSRAKTNNDTDGFVKVLGDK 438 (1074)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~-~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (1074)
+++.+.+..|+++|||..+||..||.. +.+-+ ..|..++... .. ...+..+|.++..+|+.++|++++.+
T Consensus 268 ~~~~G~i~vd~~~~Ts~~~IyA~GD~~~~~~~~~~a~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~~~p~ia~vGlte~~ 347 (441)
T PRK08010 268 VNERGAIVVDKYLHTTADNIWAMGDVTGGLQFTYISLDDYRIVRDELLGEGKRSTDDRKNVPYSVFMTPPLSRVGMTEEQ 347 (441)
T ss_pred ECCCCcEEECCCcccCCCCEEEeeecCCCccchhHHHHHHHHHHHHHcCCCCcccCccCCCCEEEECCCCceeeeCCHHH
Confidence 566777999999999999999999983 22222 2345666532 11 23456889999999999999998887
Q ss_pred CCCcccccccccCCCcEEEEeeccCccchhhhcCCCcceEEEEEECCCCcEEEEEEeCCChhHHHHHHHHHHHcCCCHHH
Q psy14927 439 LTDKVLGVHIIGPGIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAMEYGASCED 518 (1074)
Q Consensus 439 ~~~~~lg~~~~~~g~~~~v~~~~~~~~~ra~~~~~~~G~~Kli~~~~~~~ilG~~iiG~~a~eli~~~a~a~~~~~~~~~ 518 (1074)
++..|+++.+...++..++|+..++.++||+|+++|++|++|||+|++|++++|+|+.+++||+.+.|+++
T Consensus 348 ---------a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~ 418 (441)
T PRK08010 348 ---------ARESGADIQVVTLPVAAIPRARVMNDTRGVLKAIVDNKTQRILGASLLCVDSHEMINIVKMVMDAGLPYSI 418 (441)
T ss_pred ---------HHHcCCCeEEEEEecCcChhhhhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHH
Confidence 77889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcccCCcccccc
Q psy14927 519 VARTCHAHPTVCVEK 533 (1074)
Q Consensus 519 l~~~~~~hPt~s~e~ 533 (1074)
|..++|+|||+++.+
T Consensus 419 l~~~~~~hPt~~e~~ 433 (441)
T PRK08010 419 LRDQIFTHPSMSESL 433 (441)
T ss_pred HhhccccCCchHHHH
Confidence 999999999999765
No 99
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=99.60 E-value=1.9e-15 Score=180.17 Aligned_cols=155 Identities=20% Similarity=0.235 Sum_probs=133.9
Q ss_pred HhhhhhccccccccccCCceEEeccchhhccH--------HHHhccccccccccccccccccccccCCcceEEEEeccCC
Q psy14927 369 VDKYLEMKRNQSFRSSNTDIILPVEKWTLLSL--------ARVLEGIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLT 440 (1074)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (1074)
+++.+ +..|+++|||..|||..||..-+... ..|...+..+...+++..+|+.+..+++.+.|++++.+
T Consensus 282 ~~~~g-i~Vd~~~~ts~~~VyA~GD~~~~~~la~~A~~~g~~aa~~~~g~~~~~~~~~~p~~v~~~p~~a~vGlte~~-- 358 (458)
T PRK06912 282 FSNKG-ISVNEHMQTNVPHIYACGDVIGGIQLAHVAFHEGTTAALHASGEDVKVNYHAVPRCIYTSPEIASVGLTEKQ-- 358 (458)
T ss_pred ecCCC-EEeCCCeecCCCCEEEEeecCCCcccHHHHHHHHHHHHHHHcCCCCCCCcCCCCeEEecCchhEEeeCCHHH--
Confidence 34556 88899999999999999998644322 22344444333445678899999999999999998887
Q ss_pred CcccccccccCCCcEEEEeeccCccchhhhcCCCcceEEEEEECCCCcEEEEEEeCCChhHHHHHHHHHHHcCCCHHHHh
Q psy14927 441 DKVLGVHIIGPGIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAMEYGASCEDVA 520 (1074)
Q Consensus 441 ~~~lg~~~~~~g~~~~v~~~~~~~~~ra~~~~~~~G~~Kli~~~~~~~ilG~~iiG~~a~eli~~~a~a~~~~~~~~~l~ 520 (1074)
++..|+++.+...+|..++|++.++.+.||+||++|++|++|||+|++|++++|+|+.+++||+.++|+++|.
T Consensus 359 -------a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~ 431 (458)
T PRK06912 359 -------AREQYGDIRIGEFPFTANGKALIIGEQTGKVKVIVEPKYQEIVGISIIGPRATELIGQGTVMIHTEVTADIME 431 (458)
T ss_pred -------HHHCCCCeEEEEEecCcchhHhhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHh
Confidence 7777889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccCCcccccc
Q psy14927 521 RTCHAHPTVCVEK 533 (1074)
Q Consensus 521 ~~~~~hPt~s~e~ 533 (1074)
+++++|||+++.+
T Consensus 432 ~~~~~hPt~~e~~ 444 (458)
T PRK06912 432 DFIAAHPTLSEAI 444 (458)
T ss_pred hCcccCCCHHHHH
Confidence 9999999999865
No 100
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.60 E-value=2e-15 Score=180.00 Aligned_cols=155 Identities=38% Similarity=0.543 Sum_probs=132.1
Q ss_pred HhhhhhccccccccccCCceEEeccchhhc--------cHHHHhccccccccccccccccccccccCCcceEEEEeccCC
Q psy14927 369 VDKYLEMKRNQSFRSSNTDIILPVEKWTLL--------SLARVLEGIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLT 440 (1074)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (1074)
+++.+ +..+.++|||+.+||..||..-+. ....|..+|.......++..+|.++..+|+.+.|++++.+
T Consensus 290 ~~~~G-~~vd~~~~Ts~~~IyA~GD~~~~~~la~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~t~p~ia~vGlte~~-- 366 (466)
T PRK06115 290 TDKRG-MLANDHHRTSVPGVWVIGDVTSGPMLAHKAEDEAVACIERIAGKAGEVNYGLIPGVIYTRPEVATVGKTEEQ-- 366 (466)
T ss_pred eCCCC-EEECCCeecCCCCEEEeeecCCCcccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEECCcccEEeeCCHHH--
Confidence 44555 556788999999999999985332 1222244554433345567889999999999999998877
Q ss_pred CcccccccccCCCcEEEEeeccCccchhhhcCCCcceEEEEEECCCCcEEEEEEeCCChhHHHHHHHHHHHcCCCHHHHh
Q psy14927 441 DKVLGVHIIGPGIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAMEYGASCEDVA 520 (1074)
Q Consensus 441 ~~~lg~~~~~~g~~~~v~~~~~~~~~ra~~~~~~~G~~Kli~~~~~~~ilG~~iiG~~a~eli~~~a~a~~~~~~~~~l~ 520 (1074)
++..|+++.+.+++|.+++|+...+.++||+||++|++|++|||+|++|++++|+|+.+++||+.+.|+.+|.
T Consensus 367 -------a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~dl~ 439 (466)
T PRK06115 367 -------LKAEGRAYKVGKFPFTANSRAKINHETEGFAKILADARTDEVLGVHMVGPSVSEMIGEFCVAMEFSASAEDIA 439 (466)
T ss_pred -------HHHCCCCEEEEEEecccChhhHhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHh
Confidence 7778999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccCCcccccc
Q psy14927 521 RTCHAHPTVCVEK 533 (1074)
Q Consensus 521 ~~~~~hPt~s~e~ 533 (1074)
.++|+|||++|.+
T Consensus 440 ~~~~~hPt~~e~~ 452 (466)
T PRK06115 440 LTCHPHPTRSEAL 452 (466)
T ss_pred hCccCCCChHHHH
Confidence 9999999999865
No 101
>PF02852 Pyr_redox_dim: Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain; InterPro: IPR004099 This entry represents a dimerisation domain that is usually found at the C-terminal of both class I and class II oxidoreductases, as well as in NADH oxidases and peroxidases [, , ].; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0045454 cell redox homeostasis, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3II4_B 2A8X_A 2BC0_B 2BC1_B 2W0H_A 2X50_B 2JK6_A 2YAU_A 2EQ9_E 2EQ6_B ....
Probab=99.59 E-value=1.5e-15 Score=143.71 Aligned_cols=106 Identities=36% Similarity=0.541 Sum_probs=97.7
Q ss_pred ccccccccCCcceEEEEeccCCCcccccccccCCCcEEEEeeccCccchhhhcCCCcceEEEEEECCCCcEEEEEEeCCC
Q psy14927 419 NSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPGIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPA 498 (1074)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~v~~~~~~~~~ra~~~~~~~G~~Kli~~~~~~~ilG~~iiG~~ 498 (1074)
+|.++..+++.+.|++++.. ++..|+++++.+.++..+.|+...+++.|++|+++|++|++|||+|++|++
T Consensus 1 vP~~vft~p~ia~vGlte~~---------a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~d~~t~~IlGa~~vg~~ 71 (110)
T PF02852_consen 1 VPTVVFTDPEIASVGLTEEE---------ARKQGIDYEVVTVPFKSNDRARYYPETEGFVKLIFDKKTGRILGAQIVGPN 71 (110)
T ss_dssp CEEEEESSSEEEEEES-HHH---------HHHHTSGEEEEEEEEGGEHHHHHTTTTEEEEEEEEETTTTBEEEEEEEETT
T ss_pred CCEEEECCCceEEEccCHHH---------HHhccCceeeeeecccccchhcccCCcceeeEEEEEeeccceeeeeeecCc
Confidence 46677777888888877777 888899999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHcCCCHHHHhhhcccCCcccccc
Q psy14927 499 AGELINEAVLAMEYGASCEDVARTCHAHPTVCVEK 533 (1074)
Q Consensus 499 a~eli~~~a~a~~~~~~~~~l~~~~~~hPt~s~e~ 533 (1074)
++|+|+.++++++.+.|++++...+++|||+++.+
T Consensus 72 a~e~I~~~~~ai~~~~t~~~l~~~~~~~Pt~se~~ 106 (110)
T PF02852_consen 72 ASELINELALAIQNGLTVEDLADDIFYHPTFSEAI 106 (110)
T ss_dssp HHHHHHHHHHHHHTTSBHHHHHTSBSSSTSTGHHH
T ss_pred hHHHHHHHHHHHHcCCCHHHHhCCeeeCCChhHHH
Confidence 99999999999999999999999999999999875
No 102
>PRK07846 mycothione reductase; Reviewed
Probab=99.59 E-value=2.4e-15 Score=178.42 Aligned_cols=157 Identities=22% Similarity=0.248 Sum_probs=134.6
Q ss_pred HHhhhhhccccccccccCCceEEeccchhh--------ccHHHHhcccccc--ccccccccccccccccCCcceEEEEec
Q psy14927 368 EVDKYLEMKRNQSFRSSNTDIILPVEKWTL--------LSLARVLEGIEYK--VGKFPFAANSRAKTNNDTDGFVKVLGD 437 (1074)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (1074)
++++.+.+..|+++|||+.+||..||..-+ .....|..++... ....++..+|.++..+++.+.|++++.
T Consensus 275 ~~~~~G~i~Vd~~~~Ts~p~IyA~GD~~~~~~l~~~A~~~g~~~a~ni~~~~~~~~~~~~~~p~~if~~p~ia~vGlte~ 354 (451)
T PRK07846 275 DVDEDGRVVVDEYQRTSAEGVFALGDVSSPYQLKHVANHEARVVQHNLLHPDDLIASDHRFVPAAVFTHPQIASVGLTEN 354 (451)
T ss_pred eECCCCcEeECCCcccCCCCEEEEeecCCCccChhHHHHHHHHHHHHHcCCCCccccCCCCCCeEEECCCCcEeEeCCHH
Confidence 356778899999999999999999998422 1222235555432 224567789999999999999999887
Q ss_pred cCCCcccccccccCCCcEEEEeeccCccchhhhcCCCcceEEEEEECCCCcEEEEEEeCCChhHHHHHHHHHHHcCCCHH
Q psy14927 438 KLTDKVLGVHIIGPGIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAMEYGASCE 517 (1074)
Q Consensus 438 ~~~~~~lg~~~~~~g~~~~v~~~~~~~~~ra~~~~~~~G~~Kli~~~~~~~ilG~~iiG~~a~eli~~~a~a~~~~~~~~ 517 (1074)
+ ++..|+++.+...++..++++...+.++||+||++|++|++|||+|++|++++|+|+.+++||+.+.|++
T Consensus 355 ~---------a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~ 425 (451)
T PRK07846 355 E---------ARAAGLDITVKVQNYGDVAYGWAMEDTTGFVKLIADRDTGRLLGAHIIGPQASTLIQPLIQAMSFGLDAR 425 (451)
T ss_pred H---------HHhcCCCEEEEEEecCcchhhhhCCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHH
Confidence 7 7788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhc-ccCCcccccc
Q psy14927 518 DVARTC-HAHPTVCVEK 533 (1074)
Q Consensus 518 ~l~~~~-~~hPt~s~e~ 533 (1074)
+|..++ ++|||+++.+
T Consensus 426 ~l~~~~~~~hPt~~e~~ 442 (451)
T PRK07846 426 EMARGQYWIHPALPEVV 442 (451)
T ss_pred HHhhCCCccCCcHHHHH
Confidence 999875 7999999765
No 103
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=99.59 E-value=2.3e-15 Score=178.57 Aligned_cols=156 Identities=18% Similarity=0.191 Sum_probs=131.1
Q ss_pred HhhhhhccccccccccCCceEEeccch--------hhccHHHHhccccccc--cccccccccccccccCCcceEEEEecc
Q psy14927 369 VDKYLEMKRNQSFRSSNTDIILPVEKW--------TLLSLARVLEGIEYKV--GKFPFAANSRAKTNNDTDGFVKVLGDK 438 (1074)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (1074)
+++.+.+..|++++|++.+||..||.. +......|.+++.... ..+.+..+|.+++.+|+.++|++++.+
T Consensus 279 ~~~~G~i~vd~~~~T~~p~IyAiGD~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~p~~~f~~p~ia~vGlte~~ 358 (450)
T TIGR01421 279 LNEKGQIIVDEYQNTNVPGIYALGDVVGKVELTPVAIAAGRKLSERLFNGKTDDKLDYNNVPTVVFSHPPIGTIGLTEKE 358 (450)
T ss_pred ECCCCcEEeCCCCcCCCCCEEEEEecCCCcccHHHHHHHHHHHHHHHhcCCCCCccCcccCCeEEeCCCceEEEeCCHHH
Confidence 566677889999999999999999963 2222233344444222 234567899999999999999998876
Q ss_pred CCCcccccccccC-CC-cEEEEeeccCccchhhhcCCCcceEEEEEECCCCcEEEEEEeCCChhHHHHHHHHHHHcCCCH
Q psy14927 439 LTDKVLGVHIIGP-GI-EYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAMEYGASC 516 (1074)
Q Consensus 439 ~~~~~lg~~~~~~-g~-~~~v~~~~~~~~~ra~~~~~~~G~~Kli~~~~~~~ilG~~iiG~~a~eli~~~a~a~~~~~~~ 516 (1074)
++.. |. .+.+...++..+.+++..+.+.||+|++++++|++|||+|++|++|+|+|+.+++||+.+.|+
T Consensus 359 ---------a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~ 429 (450)
T TIGR01421 359 ---------AIEKYGKENIKVYNSSFTPMYYAMTSEKQKCRMKLVCAGKEEKVVGLHGIGDGVDEMLQGFAVAIKMGATK 429 (450)
T ss_pred ---------HHhhcCCCCEEEEEEEcChhHHHHhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCH
Confidence 5544 54 488889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcccCCcccccc
Q psy14927 517 EDVARTCHAHPTVCVEK 533 (1074)
Q Consensus 517 ~~l~~~~~~hPt~s~e~ 533 (1074)
++|.+++|+|||++|.+
T Consensus 430 ~~l~~~~~~hPt~~e~~ 446 (450)
T TIGR01421 430 ADFDNTVAIHPTSSEEL 446 (450)
T ss_pred HHHhhcccCCCChHHHH
Confidence 99999999999999865
No 104
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=99.59 E-value=2.9e-15 Score=178.72 Aligned_cols=156 Identities=21% Similarity=0.180 Sum_probs=132.5
Q ss_pred HhhhhhccccccccccCCceEEeccchhhc--------cHHHHhccccccc-cccccccccccccccCCcceEEEEeccC
Q psy14927 369 VDKYLEMKRNQSFRSSNTDIILPVEKWTLL--------SLARVLEGIEYKV-GKFPFAANSRAKTNNDTDGFVKVLGDKL 439 (1074)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (1074)
+++.+.++.|+++|||+.+||..||..-++ ....|..++.... ..+.+..+|..+..+++.++|++++..
T Consensus 288 ~~~~G~i~Vd~~~~Ts~~~IyA~GD~~~~~~l~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~vf~~p~~a~vGlte~~- 366 (466)
T PRK07845 288 LTPSGHITVDRVSRTSVPGIYAAGDCTGVLPLASVAAMQGRIAMYHALGEAVSPLRLKTVASNVFTRPEIATVGVSQAA- 366 (466)
T ss_pred ECCCCcEeECCCcccCCCCEEEEeeccCCccchhHHHHHHHHHHHHHcCCCCCcCCCCCCCEEEeCCCcceeecCCHHH-
Confidence 566777899999999999999999985332 2222233333221 223456889999999999999998876
Q ss_pred CCcccccccccCCCcEEEEeeccCccchhhhcCCCcceEEEEEECCCCcEEEEEEeCCChhHHHHHHHHHHHcCCCHHHH
Q psy14927 440 TDKVLGVHIIGPGIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAMEYGASCEDV 519 (1074)
Q Consensus 440 ~~~~lg~~~~~~g~~~~v~~~~~~~~~ra~~~~~~~G~~Kli~~~~~~~ilG~~iiG~~a~eli~~~a~a~~~~~~~~~l 519 (1074)
++..|+++.+...++..++|+...+.++||+|+++|++|++|||+|++|++++|+|+.+++||+.+.|+++|
T Consensus 367 --------a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l 438 (466)
T PRK07845 367 --------IDSGEVPARTVMLPLATNPRAKMSGLRDGFVKLFCRPGTGVVIGGVVVAPRASELILPIALAVQNRLTVDDL 438 (466)
T ss_pred --------HHhCCCceEEEEEecccCchhhhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHH
Confidence 777789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccCCcccccc
Q psy14927 520 ARTCHAHPTVCVEK 533 (1074)
Q Consensus 520 ~~~~~~hPt~s~e~ 533 (1074)
.+++|+|||+++.+
T Consensus 439 ~~~~~~hPt~~e~~ 452 (466)
T PRK07845 439 AQTFTVYPSLSGSI 452 (466)
T ss_pred hcCcCCCCCHHHHH
Confidence 99999999999754
No 105
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=99.59 E-value=3e-15 Score=178.98 Aligned_cols=157 Identities=28% Similarity=0.355 Sum_probs=134.5
Q ss_pred HhhhhhccccccccccCCceEEeccchhhc--------cHHHHhccccc-cccccccccccccccccCCcceEEEEeccC
Q psy14927 369 VDKYLEMKRNQSFRSSNTDIILPVEKWTLL--------SLARVLEGIEY-KVGKFPFAANSRAKTNNDTDGFVKVLGDKL 439 (1074)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (1074)
+++.+.+..|+++|||+.+||..||...+. ....|..++.. ....+.+..+|..+..+++.+.|++++..
T Consensus 282 ~~~~g~i~vd~~~~ts~~~IyA~GD~~~~~~~~~~A~~qg~~aa~~i~~~~~~~~~~~~~p~~~~~~~~~a~vG~te~~- 360 (460)
T PRK06292 282 LDERGRPVVDEHTQTSVPGIYAAGDVNGKPPLLHEAADEGRIAAENAAGDVAGGVRYHPIPSVVFTDPQIASVGLTEEE- 360 (460)
T ss_pred ecCCCcEeECCCcccCCCCEEEEEecCCCccchhHHHHHHHHHHHHhcCCCCCCcCCCCCCeEEECCCccEEeECCHHH-
Confidence 556777889999999999999999984321 12223444443 23334566788899999999999998777
Q ss_pred CCcccccccccCCCcEEEEeeccCccchhhhcCCCcceEEEEEECCCCcEEEEEEeCCChhHHHHHHHHHHHcCCCHHHH
Q psy14927 440 TDKVLGVHIIGPGIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAMEYGASCEDV 519 (1074)
Q Consensus 440 ~~~~lg~~~~~~g~~~~v~~~~~~~~~ra~~~~~~~G~~Kli~~~~~~~ilG~~iiG~~a~eli~~~a~a~~~~~~~~~l 519 (1074)
+++.|+++.+...+++.++|+...+.+.||+|+++|++|++|||+|++|++++|+|+.+++||+.+.|+++|
T Consensus 361 --------a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~klv~d~~~~~ilG~~~vg~~a~e~i~~~~~ai~~~~t~~~l 432 (460)
T PRK06292 361 --------LKAAGIDYVVGEVPFEAQGRARVMGKNDGFVKVYADKKTGRLLGAHIIGPDAEHLIHLLAWAMQQGLTVEDL 432 (460)
T ss_pred --------HHhcCCCeEEEEEecccchHHHhcCCCCeEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHH
Confidence 777899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccCCccccccc
Q psy14927 520 ARTCHAHPTVCVEKN 534 (1074)
Q Consensus 520 ~~~~~~hPt~s~e~~ 534 (1074)
.+++|+|||+++.+.
T Consensus 433 ~~~~~~hPt~~e~~~ 447 (460)
T PRK06292 433 LRMPFYHPTLSEGLR 447 (460)
T ss_pred hhCccCCCCHHHHHH
Confidence 999999999998763
No 106
>PRK06116 glutathione reductase; Validated
Probab=99.59 E-value=2.9e-15 Score=178.45 Aligned_cols=156 Identities=20% Similarity=0.157 Sum_probs=132.5
Q ss_pred HhhhhhccccccccccCCceEEeccchhhc--c------HHHHhccccccc--cccccccccccccccCCcceEEEEecc
Q psy14927 369 VDKYLEMKRNQSFRSSNTDIILPVEKWTLL--S------LARVLEGIEYKV--GKFPFAANSRAKTNNDTDGFVKVLGDK 438 (1074)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~------~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (1074)
+++.+.++.|+.+|||+.+||..||..-+. + ...|+.++.... ....+..+|..+...|+.++|++++.+
T Consensus 279 ~~~~G~i~vd~~~~Ts~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~p~~if~~p~~a~vGlte~~ 358 (450)
T PRK06116 279 LNEKGYIIVDEYQNTNVPGIYAVGDVTGRVELTPVAIAAGRRLSERLFNNKPDEKLDYSNIPTVVFSHPPIGTVGLTEEE 358 (450)
T ss_pred ECCCCcEecCCCCCcCCCCEEEEeecCCCcCcHHHHHHHHHHHHHHHhCCCCCCcCCcCCCCeEEeCCCccEEeeCCHHH
Confidence 567777999999999999999999984221 1 112234443321 233557899999999999999998877
Q ss_pred CCCcccccccccCCCc--EEEEeeccCccchhhhcCCCcceEEEEEECCCCcEEEEEEeCCChhHHHHHHHHHHHcCCCH
Q psy14927 439 LTDKVLGVHIIGPGIE--YKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAMEYGASC 516 (1074)
Q Consensus 439 ~~~~~lg~~~~~~g~~--~~v~~~~~~~~~ra~~~~~~~G~~Kli~~~~~~~ilG~~iiG~~a~eli~~~a~a~~~~~~~ 516 (1074)
+++.|.+ +.+...++..+.+++..+.++||+|+++|++|++|||+|++|++++|+|+.+++||+.+.|+
T Consensus 359 ---------a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~ 429 (450)
T PRK06116 359 ---------AREQYGEDNVKVYRSSFTPMYTALTGHRQPCLMKLVVVGKEEKVVGLHGIGFGADEMIQGFAVAIKMGATK 429 (450)
T ss_pred ---------HHHhCCCCcEEEEEEecchhHHHHhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCH
Confidence 7777766 89999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcccCCcccccc
Q psy14927 517 EDVARTCHAHPTVCVEK 533 (1074)
Q Consensus 517 ~~l~~~~~~hPt~s~e~ 533 (1074)
++|.+++|+|||++|..
T Consensus 430 ~~l~~~~~~hPt~~e~~ 446 (450)
T PRK06116 430 ADFDNTVAIHPTAAEEF 446 (450)
T ss_pred HHHhcccccCCChHHHH
Confidence 99999999999999765
No 107
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=99.58 E-value=3.2e-15 Score=178.77 Aligned_cols=156 Identities=27% Similarity=0.340 Sum_probs=136.4
Q ss_pred HhhhhhccccccccccCCceEEeccchhh--------ccHHHHhcccccc-ccccccccccccccccCCcceEEEEeccC
Q psy14927 369 VDKYLEMKRNQSFRSSNTDIILPVEKWTL--------LSLARVLEGIEYK-VGKFPFAANSRAKTNNDTDGFVKVLGDKL 439 (1074)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (1074)
+++.+.++.|+++|||..+||..||...+ .....|..++... ...++...+|.++..+++.+.|++++..
T Consensus 280 ~~~~G~i~vd~~~~Ts~~~VyAiGD~~~~~~~~~~A~~~g~~aa~ni~~~~~~~~~~~~~p~~~~~~p~~a~vGlte~~- 358 (463)
T TIGR02053 280 LDERGGILVDETLRTSNPGIYAAGDVTGGLQLEYVAAKEGVVAAENALGGANAKLDLLVIPRVVFTDPAVASVGLTEAE- 358 (463)
T ss_pred ECCCCcEeECCCccCCCCCEEEeeecCCCcccHhHHHHHHHHHHHHhcCCCCCccCcCCCCeEEeccCceEEEeCCHHH-
Confidence 56677789999999999999999997432 2233345555543 4567778899999999999999998877
Q ss_pred CCcccccccccCCCcEEEEeeccCccchhhhcCCCcceEEEEEECCCCcEEEEEEeCCChhHHHHHHHHHHHcCCCHHHH
Q psy14927 440 TDKVLGVHIIGPGIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAMEYGASCEDV 519 (1074)
Q Consensus 440 ~~~~lg~~~~~~g~~~~v~~~~~~~~~ra~~~~~~~G~~Kli~~~~~~~ilG~~iiG~~a~eli~~~a~a~~~~~~~~~l 519 (1074)
++..|+++.+...++..++|+...+.+.||+|+++|++|++|||+|++|++++|+|+.+++|++.+.|+.+|
T Consensus 359 --------a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l 430 (463)
T TIGR02053 359 --------AQKAGIECDCRTLPLTNVPRARINRDTRGFIKLVAEPGTGKVLGVQVVAPEAAEVINEAALAIRAGMTVDDL 430 (463)
T ss_pred --------HHhcCCCeEEEEEecccchHHHhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHH
Confidence 777899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccCCcccccc
Q psy14927 520 ARTCHAHPTVCVEK 533 (1074)
Q Consensus 520 ~~~~~~hPt~s~e~ 533 (1074)
.++++||||+++.+
T Consensus 431 ~~~~~~~pt~~e~~ 444 (463)
T TIGR02053 431 IDTLHPFPTMAEGL 444 (463)
T ss_pred hhCcccCCChHHHH
Confidence 99999999999765
No 108
>PLN02546 glutathione reductase
Probab=99.57 E-value=4e-15 Score=179.05 Aligned_cols=160 Identities=21% Similarity=0.146 Sum_probs=134.7
Q ss_pred HhhhhhccccccccccCCceEEeccchhhc--------cHHHHhccccccc-cccccccccccccccCCcceEEEEeccC
Q psy14927 369 VDKYLEMKRNQSFRSSNTDIILPVEKWTLL--------SLARVLEGIEYKV-GKFPFAANSRAKTNNDTDGFVKVLGDKL 439 (1074)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (1074)
+++.+.+..|+++|||+.+||..||..-+. ....+..++.... ....+..+|.+++.+|+.++|++++..
T Consensus 364 ~d~~G~I~VD~~l~Ts~p~IYAaGDv~~~~~l~~~A~~~g~~~a~~i~g~~~~~~~~~~vp~~vft~Peia~VGlte~e- 442 (558)
T PLN02546 364 MDKNGAIEVDEYSRTSVPSIWAVGDVTDRINLTPVALMEGGALAKTLFGNEPTKPDYRAVPSAVFSQPPIGQVGLTEEQ- 442 (558)
T ss_pred CCCCCcEeECCCceeCCCCEEEeeccCCCcccHHHHHHHHHHHHHHHcCCCCCcCCCCCCCEEEeCCchHhhccCCHHH-
Confidence 567778999999999999999999994322 1222344443321 123467889999999999999998887
Q ss_pred CCcccccccccCCCcEEEEeeccCccchhhhcCCCcceEEEEEECCCCcEEEEEEeCCChhHHHHHHHHHHHcCCCHHHH
Q psy14927 440 TDKVLGVHIIGPGIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAMEYGASCEDV 519 (1074)
Q Consensus 440 ~~~~lg~~~~~~g~~~~v~~~~~~~~~ra~~~~~~~G~~Kli~~~~~~~ilG~~iiG~~a~eli~~~a~a~~~~~~~~~l 519 (1074)
++..|+++.+.+.+|..+.+++..+.+.||+||+++++|++|||+|++|++++|+|+.+++||+.++|+++|
T Consensus 443 --------A~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~Klv~d~~t~~ILGa~ivG~~a~elI~~~a~ai~~~~t~~dl 514 (558)
T PLN02546 443 --------AIEEYGDVDVFTANFRPLKATLSGLPDRVFMKLIVCAKTNKVLGVHMCGEDAPEIIQGFAVAVKAGLTKADF 514 (558)
T ss_pred --------HHHcCCCeEEEEEecccchhhhhCCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHH
Confidence 777888899999999999988877788999999999999999999999999999999999999999999999
Q ss_pred hhhcccCCcccccccccc
Q psy14927 520 ARTCHAHPTVCVEKNDTL 537 (1074)
Q Consensus 520 ~~~~~~hPt~s~e~~~~~ 537 (1074)
.+++|+|||+++.+....
T Consensus 515 ~~~~~~hPT~~E~~~~~~ 532 (558)
T PLN02546 515 DATVGIHPTAAEEFVTMR 532 (558)
T ss_pred hhcccCCCChHHHHHHHh
Confidence 999999999998874443
No 109
>KOG1346|consensus
Probab=99.56 E-value=6e-15 Score=159.23 Aligned_cols=208 Identities=23% Similarity=0.257 Sum_probs=158.4
Q ss_pred hCCeEEEee-eEEEecCCeEEEEeCCCCeeEEEcCeEEEccCCCCCCCCCCCCCCc-------ceechhhHhcchH----
Q psy14927 854 SNKVTQLNG-HGKITGPNTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGIEVDEE-------TIVSSTGALSLKK---- 921 (1074)
Q Consensus 854 ~~gV~~~~g-~v~~id~~~~~v~~~~G~~~~i~~d~lIIATG~~p~~ipgi~~~~~-------~v~t~~~~~~~~~---- 921 (1074)
+-||-+..| .|+.+|.....|++.|| .+|.||.++||||.+|..++-++.... .+.+..||..+.+
T Consensus 269 nGGvAvl~G~kvvkid~~d~~V~LnDG--~~I~YdkcLIATG~~Pk~l~~~~~A~~evk~kit~fr~p~DF~rlek~~ae 346 (659)
T KOG1346|consen 269 NGGVAVLRGRKVVKIDEEDKKVILNDG--TTIGYDKCLIATGVRPKKLQVFEEASEEVKQKITYFRYPADFKRLEKGLAE 346 (659)
T ss_pred cCceEEEeccceEEeecccCeEEecCC--cEeehhheeeecCcCcccchhhhhcCHHhhhheeEEecchHHHHHHHhhhh
Confidence 348999999 69999999999999999 899999999999999977665543222 1225666666555
Q ss_pred ----------------hhHH----hhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeE
Q psy14927 922 ----------------GSVW----GRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNI 981 (1074)
Q Consensus 922 ----------------A~~l----~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~ 981 (1074)
|..| +..|.+|+-+......+..-++.-+++.-.+.+++.||.++.+..|.++......+
T Consensus 347 k~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~nm~kiLPeyls~wt~ekir~~GV~V~pna~v~sv~~~~~nl 426 (659)
T KOG1346|consen 347 KQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKYNMEKILPEYLSQWTIEKIRKGGVDVRPNAKVESVRKCCKNL 426 (659)
T ss_pred cceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeecccCChhhhhHHHHHHHHHHHHHhcCceeccchhhhhhhhhccce
Confidence 2223 33577777554443333233455566667788999999999999999988776667
Q ss_pred EEEEeeccCCCCceEEEcCEEEEccCCcccCCccCccccCcccCCC-CCeeeCCCCCCCCCCEEEecccCCCC-------
Q psy14927 982 TVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEK-GRVPVNSRFQTVIPNIFAIGDCIHGP------- 1053 (1074)
Q Consensus 982 ~v~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~-G~I~Vd~~~~ts~~~IyAiGD~~~~~------- 1053 (1074)
.+.+.| +.++..|+|++|+|-.||+++ ....|+++|++ |.+.||..++.. .|||++||++...
T Consensus 427 ~lkL~d------G~~l~tD~vVvavG~ePN~el--a~~sgLeiD~~lGGfrvnaeL~ar-~NvwvAGdaacF~D~~LGrR 497 (659)
T KOG1346|consen 427 VLKLSD------GSELRTDLVVVAVGEEPNSEL--AEASGLEIDEKLGGFRVNAELKAR-ENVWVAGDAACFEDGVLGRR 497 (659)
T ss_pred EEEecC------CCeeeeeeEEEEecCCCchhh--cccccceeecccCcEEeeheeecc-cceeeecchhhhhcccccce
Confidence 888877 679999999999999999998 67888998875 778899877754 6899999988631
Q ss_pred --CcHHHHHHHHHHHHHHhhC
Q psy14927 1054 --MLAHKAEDEGIVCVEGIAG 1072 (1074)
Q Consensus 1054 --~~~~~A~~~G~~aA~~I~~ 1072 (1074)
.....|.-.|+.|+.|+.|
T Consensus 498 RVehhdhavvSGRLAGENMtg 518 (659)
T KOG1346|consen 498 RVEHHDHAVVSGRLAGENMTG 518 (659)
T ss_pred eccccccceeeceeccccccc
Confidence 1244678889999998875
No 110
>PRK13748 putative mercuric reductase; Provisional
Probab=99.56 E-value=6.5e-15 Score=180.52 Aligned_cols=156 Identities=21% Similarity=0.208 Sum_probs=136.5
Q ss_pred HhhhhhccccccccccCCceEEeccchhh--------ccHHHHhccccccccccccccccccccccCCcceEEEEeccCC
Q psy14927 369 VDKYLEMKRNQSFRSSNTDIILPVEKWTL--------LSLARVLEGIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLT 440 (1074)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (1074)
+++++.+..|+++|||..|||..||..-+ .....|..++......++...+|.++..+++.++|++++..
T Consensus 379 ~~~~g~i~vd~~~~Ts~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~p~~a~vGlte~~-- 456 (561)
T PRK13748 379 VNAQGAIVIDQGMRTSVPHIYAAGDCTDQPQFVYVAAAAGTRAAINMTGGDAALDLTAMPAVVFTDPQVATVGYSEAE-- 456 (561)
T ss_pred ECCCCCEeECCCcccCCCCEEEeeecCCCccchhHHHHHHHHHHHHHcCCCcccCCCCCCeEEEccCCceeeeCCHHH--
Confidence 56677799999999999999999998322 22233355555444567788899999999999999998777
Q ss_pred CcccccccccCCCcEEEEeeccCccchhhhcCCCcceEEEEEECCCCcEEEEEEeCCChhHHHHHHHHHHHcCCCHHHHh
Q psy14927 441 DKVLGVHIIGPGIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAMEYGASCEDVA 520 (1074)
Q Consensus 441 ~~~lg~~~~~~g~~~~v~~~~~~~~~ra~~~~~~~G~~Kli~~~~~~~ilG~~iiG~~a~eli~~~a~a~~~~~~~~~l~ 520 (1074)
++..|+++.+..+++..++++...+.++||+||++|++|++|||+|++|++++|+|+.+++|++.+.|+.+|.
T Consensus 457 -------a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~ 529 (561)
T PRK13748 457 -------AHHDGIETDSRTLTLDNVPRALANFDTRGFIKLVIEEGSGRLIGVQAVAPEAGELIQTAALAIRNRMTVQELA 529 (561)
T ss_pred -------HHHcCCCeEEEEEecccCchhhhcCCCCeEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHh
Confidence 7778999999999999999999988899999999999999999999999999999999999999999999999
Q ss_pred hhcccCCcccccc
Q psy14927 521 RTCHAHPTVCVEK 533 (1074)
Q Consensus 521 ~~~~~hPt~s~e~ 533 (1074)
.++|+|||++|.+
T Consensus 530 ~~~~~~Pt~~e~~ 542 (561)
T PRK13748 530 DQLFPYLTMVEGL 542 (561)
T ss_pred cccccCCchHHHH
Confidence 9999999999765
No 111
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=99.56 E-value=6.5e-15 Score=174.83 Aligned_cols=157 Identities=20% Similarity=0.189 Sum_probs=131.5
Q ss_pred HhhhhhccccccccccCCceEEeccch-------hhccHHH-Hhcccccccc--ccccccccccccccCCcceEEEEecc
Q psy14927 369 VDKYLEMKRNQSFRSSNTDIILPVEKW-------TLLSLAR-VLEGIEYKVG--KFPFAANSRAKTNNDTDGFVKVLGDK 438 (1074)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (1074)
+++.+.++.|+++||+..+||..||.. +++-+.. |...+..... ..+...+|..++.+++.+++++++.+
T Consensus 267 ~~~~g~i~vd~~~~t~~~~IyaiGD~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~p~ia~vGlte~~ 346 (438)
T PRK07251 267 LTERGAIKVDDYCQTSVPGVFAVGDVNGGPQFTYISLDDFRIVFGYLTGDGSYTLEDRGNVPTTMFITPPLSQVGLTEKE 346 (438)
T ss_pred ECCCCcEEECCCcccCCCCEEEeeecCCCcccHhHHHHHHHHHHHHHcCCCCccccccCCCCEEEECCCceEeeeCCHHH
Confidence 456677889999999999999999963 2222222 2332322211 23445788889999999999997777
Q ss_pred CCCcccccccccCCCcEEEEeeccCccchhhhcCCCcceEEEEEECCCCcEEEEEEeCCChhHHHHHHHHHHHcCCCHHH
Q psy14927 439 LTDKVLGVHIIGPGIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAMEYGASCED 518 (1074)
Q Consensus 439 ~~~~~lg~~~~~~g~~~~v~~~~~~~~~ra~~~~~~~G~~Kli~~~~~~~ilG~~iiG~~a~eli~~~a~a~~~~~~~~~ 518 (1074)
++..|+++.+.+.++..++++...++++|++||++|++|++|||+|++|++++|+|+.+++||+.+.|+++
T Consensus 347 ---------a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~ 417 (438)
T PRK07251 347 ---------AKEAGLPYAVKELLVAAMPRAHVNNDLRGAFKVVVNTETKEILGATLFGEGSQEIINLITMAMDNKIPYTY 417 (438)
T ss_pred ---------HHhcCCCeEEEEEECCcchhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHH
Confidence 77889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcccCCccccccc
Q psy14927 519 VARTCHAHPTVCVEKN 534 (1074)
Q Consensus 519 l~~~~~~hPt~s~e~~ 534 (1074)
|.+++|+|||++|.+.
T Consensus 418 l~~~~~~hPt~~e~~~ 433 (438)
T PRK07251 418 FKKQIFTHPTMAENLN 433 (438)
T ss_pred HhcccccCCChHHHHH
Confidence 9999999999998763
No 112
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=99.54 E-value=1.4e-14 Score=173.44 Aligned_cols=153 Identities=33% Similarity=0.389 Sum_probs=131.7
Q ss_pred hhhccccccccccCCceEEeccchhhcc--------HHHHhccccccc-cccccccccccccccCCcceEEEEeccCCCc
Q psy14927 372 YLEMKRNQSFRSSNTDIILPVEKWTLLS--------LARVLEGIEYKV-GKFPFAANSRAKTNNDTDGFVKVLGDKLTDK 442 (1074)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (1074)
.+.+..+++++|+..+||..||...+.. ...|...+.... ..++....|.+++.+++.+.+++++..
T Consensus 297 ~g~i~Vd~~l~ts~~~IyAiGD~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~p~~a~vG~te~~---- 372 (472)
T PRK05976 297 GGFIQIDDFCQTKERHIYAIGDVIGEPQLAHVAMAEGEMAAEHIAGKKPRPFDYAAIPACCYTDPEVASVGLTEEE---- 372 (472)
T ss_pred CCEEEECCCcccCCCCEEEeeecCCCcccHHHHHHHHHHHHHHHcCCCCCCCCCCCCCEEEECcCceEEEeCCHHH----
Confidence 4557888999999999999999954431 122333443332 445666788999999999999998877
Q ss_pred ccccccccCCCcEEEEeeccCccchhhhcCCCcceEEEEEECCCCcEEEEEEeCCChhHHHHHHHHHHHcCCCHHHHhhh
Q psy14927 443 VLGVHIIGPGIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAMEYGASCEDVART 522 (1074)
Q Consensus 443 ~lg~~~~~~g~~~~v~~~~~~~~~ra~~~~~~~G~~Kli~~~~~~~ilG~~iiG~~a~eli~~~a~a~~~~~~~~~l~~~ 522 (1074)
++..|+++.+...+|..++|+..++.++||+|+++|++|++|||+|++|++++|+|+.+++||+.++|+++|.++
T Consensus 373 -----a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~ 447 (472)
T PRK05976 373 -----AKEAGYDVKVGKFPFAANGKALTYGESDGFVKVVADRDTHDILGVQAVGPHVTELISEFALALELGARLWEVAGT 447 (472)
T ss_pred -----HHHcCCCEEEEEEECCcchhhhhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhC
Confidence 778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCcccccc
Q psy14927 523 CHAHPTVCVEK 533 (1074)
Q Consensus 523 ~~~hPt~s~e~ 533 (1074)
+|+|||+++.+
T Consensus 448 ~~~hPt~~e~~ 458 (472)
T PRK05976 448 IHPHPTLSEAI 458 (472)
T ss_pred cccCCChHHHH
Confidence 99999999865
No 113
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=99.54 E-value=1.4e-14 Score=172.62 Aligned_cols=158 Identities=16% Similarity=0.152 Sum_probs=127.7
Q ss_pred HHhhhhhccccccccccCCceEEeccchhh-----ccH---HHHhccccccc-cccccccccccccccCCcceEEEEecc
Q psy14927 368 EVDKYLEMKRNQSFRSSNTDIILPVEKWTL-----LSL---ARVLEGIEYKV-GKFPFAANSRAKTNNDTDGFVKVLGDK 438 (1074)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~---~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (1074)
++++.+.++.|+.+|||+.|||..||..-+ +.. ..|..++.... ..+....+|.+++..|+.++|++++.+
T Consensus 301 ~~~~~G~I~Vd~~l~Ts~~~IyA~GDv~~~~~l~~~A~~qG~~aa~ni~g~~~~~~~~~~vp~~vft~peia~vGlte~e 380 (486)
T TIGR01423 301 ELTKKGAIQVDEFSRTNVPNIYAIGDVTDRVMLTPVAINEGAAFVDTVFGNKPRKTDHTRVASAVFSIPPIGTCGLVEED 380 (486)
T ss_pred eECCCCCEecCCCCcCCCCCEEEeeecCCCcccHHHHHHHHHHHHHHHhCCCCcccCCCCCCEEEeCCCceEEeeCCHHH
Confidence 356778899999999999999999998322 112 22344444322 234556799999999999999998877
Q ss_pred CCCcccccccccCCCcEEEEeeccCccchhhhcCC-CcceEEEEEECCCCcEEEEEEeCCChhHHHHHHHHHHHcCCCHH
Q psy14927 439 LTDKVLGVHIIGPGIEYKVGKFPFAANSRAKTNND-TDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAMEYGASCE 517 (1074)
Q Consensus 439 ~~~~~lg~~~~~~g~~~~v~~~~~~~~~ra~~~~~-~~G~~Kli~~~~~~~ilG~~iiG~~a~eli~~~a~a~~~~~~~~ 517 (1074)
++..+.++.+...++..+.++..... ..||+||++|++|++|||+|++|++++|+|+.+++||+.++|+.
T Consensus 381 ---------A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Klv~d~~~~~iLGa~ivg~~a~elI~~~~~ai~~~~t~~ 451 (486)
T TIGR01423 381 ---------AAKKFEKVAVYESSFTPLMHNISGSKYKKFVAKIVTNHADGTVLGVHLLGDSSPEIIQAVGICLKLNAKIS 451 (486)
T ss_pred ---------HHhcCCceEEEEEeeCchhhhhccCccCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHH
Confidence 55556677888888887777655222 37999999999999999999999999999999999999999999
Q ss_pred HHhhhcccCCccccccc
Q psy14927 518 DVARTCHAHPTVCVEKN 534 (1074)
Q Consensus 518 ~l~~~~~~hPt~s~e~~ 534 (1074)
+|.+++|+|||++|.+.
T Consensus 452 dl~~~~~~hPt~sE~~~ 468 (486)
T TIGR01423 452 DFYNTIGVHPTSAEELC 468 (486)
T ss_pred HHhhcccCCCCcHHHHH
Confidence 99999999999998763
No 114
>KOG2041|consensus
Probab=99.53 E-value=4.4e-13 Score=152.01 Aligned_cols=237 Identities=16% Similarity=0.153 Sum_probs=197.0
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHhccCHHHHHHHHHHhhChhhh----------------------------------
Q psy14927 37 TDKLEKYIIQSKDPVLLKWWAQYIESTEDMDLAMKYYEEARDYLSM---------------------------------- 82 (1074)
Q Consensus 37 ~~~~~~~~~~~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~~~~---------------------------------- 82 (1074)
...+.+|+..+.+|.||+.+|.++...-.++.|+.+|.++|||..+
T Consensus 679 ledA~qfiEdnPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yl 758 (1189)
T KOG2041|consen 679 LEDAIQFIEDNPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYL 758 (1189)
T ss_pred hHHHHHHHhcCCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhh
Confidence 3577889999999999999999999999999999999999999654
Q ss_pred --------hhHhhccCCHHHHHHHHHhcCC--h-----HHHHHHHHHHHhcCChHHHHHHHHHhCChHHHHHHHHHhCch
Q psy14927 83 --------VRVLCFLQDFSRAAELANASGD--T-----AAAYHLARQYENSGQFDEAIHFYSVAGSCGNAVRLCKEQALD 147 (1074)
Q Consensus 83 --------vr~l~~~~~~~~a~~i~~~~~~--~-----~~~~~la~~~~~~g~~~~Ai~~y~~a~~~~~A~~la~~~~~~ 147 (1074)
|.+...+|||-+..++.|.-++ + .+...+|.+|.+.-.|++|.++|..+|.-+.-++.--..++.
T Consensus 759 d~drrDLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ecly~le~f 838 (1189)
T KOG2041|consen 759 DADRRDLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTENQIECLYRLELF 838 (1189)
T ss_pred ccchhhhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHHHHHhh
Confidence 4445567777777777774221 1 356689999999999999999999999999999988888899
Q ss_pred HHHHHHhhhcCc--hhHHHHHHHHccCC-hhHHHHHHHHhCChHHHHHHHHhhccCCcchHHHHHHHHHHhcCCChhhHH
Q psy14927 148 DQLWNLALSAGP--SEQIEAATYLETIE-PDKAVLLYHKAGALHKALDLAFKLTLSNSGLVFQIKAMKCLLKSGDTNKII 224 (1074)
Q Consensus 148 ~~~~~l~~~~~~--~~~~~~A~~~e~~~-~~~A~~ly~kaG~~~kAl~l~~~~~~~~~~~~~~~~a~k~l~~~~~~~~~i 224 (1074)
+++..++...+. +.+...|+.|.+.+ -++||+.|.|++.+.+|+..|.. ..+|.+++
T Consensus 839 ~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pkaAv~tCv~--------------------LnQW~~av 898 (1189)
T KOG2041|consen 839 GELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPKAAVHTCVE--------------------LNQWGEAV 898 (1189)
T ss_pred hhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhccCcHHHHHHHHH--------------------HHHHHHHH
Confidence 999888866554 66777999999955 59999999999999999999999 67899999
Q ss_pred HhhhhcchHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHhHHHHhhcCHHHHHHHH
Q psy14927 225 FFAGVSRMKEIYVMAANYLQSSDWKSQPELLKSIISFYSKGKAPHLLANFYVSCAQVEIDEFGNYEKGLGAL 296 (1074)
Q Consensus 225 ~~a~~~r~~~l~~~aa~yl~~~~~~~~~~~~~~i~~~Y~k~~~~~~aa~~~~~~a~~ei~e~~~y~~a~~~l 296 (1074)
++|.....+++-.+.|.|--.+..++ .....++.|+|++.+-.||+....+|..|-+-+--|..-.+.+
T Consensus 899 elaq~~~l~qv~tliak~aaqll~~~---~~~eaIe~~Rka~~~~daarll~qmae~e~~K~~p~lr~KklY 967 (1189)
T KOG2041|consen 899 ELAQRFQLPQVQTLIAKQAAQLLADA---NHMEAIEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRLKKLY 967 (1189)
T ss_pred HHHHhccchhHHHHHHHHHHHHHhhc---chHHHHHHhhhcccchhHHHHHHHHhHHHhhccCCHHHHHHHH
Confidence 99999999999998777665542222 2345688999999999999999999999955566676654443
No 115
>PLN02507 glutathione reductase
Probab=99.53 E-value=1.7e-14 Score=173.01 Aligned_cols=158 Identities=18% Similarity=0.133 Sum_probs=131.5
Q ss_pred HhhhhhccccccccccCCceEEeccchhhc--------cHHHHhccccccccc-cccccccccccccCCcceEEEEeccC
Q psy14927 369 VDKYLEMKRNQSFRSSNTDIILPVEKWTLL--------SLARVLEGIEYKVGK-FPFAANSRAKTNNDTDGFVKVLGDKL 439 (1074)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (1074)
+++.+.++.|+++||+..|||..||..-+. ....|..++...... ..+..+|..+...|+.++|++++.+
T Consensus 314 ~~~~G~I~Vd~~~~Ts~p~IyAiGDv~~~~~l~~~A~~qg~~aa~ni~g~~~~~~~~~~~p~~if~~p~ia~vGlte~e- 392 (499)
T PLN02507 314 LDKAGAVKVDEYSRTNIPSIWAIGDVTNRINLTPVALMEGTCFAKTVFGGQPTKPDYENVACAVFCIPPLSVVGLSEEE- 392 (499)
T ss_pred ECCCCcEecCCCCcCCCCCEEEeeEcCCCCccHHHHHHHHHHHHHHHcCCCCCcCCCCCCCeEEECCCccEEEeCCHHH-
Confidence 567777999999999999999999984322 122224444332222 2356779999999999999998887
Q ss_pred CCcccccccccC-CCcEEEEeeccCccchhhhcCCCcceEEEEEECCCCcEEEEEEeCCChhHHHHHHHHHHHcCCCHHH
Q psy14927 440 TDKVLGVHIIGP-GIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAMEYGASCED 518 (1074)
Q Consensus 440 ~~~~lg~~~~~~-g~~~~v~~~~~~~~~ra~~~~~~~G~~Kli~~~~~~~ilG~~iiG~~a~eli~~~a~a~~~~~~~~~ 518 (1074)
++.. +.++.+...++..++++...+.+.||+||++|++|++|||+|++|++++|+|+.+++||+.+.|+++
T Consensus 393 --------a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~d~~t~~ilG~~~vg~~a~e~i~~~~~ai~~~~t~~~ 464 (499)
T PLN02507 393 --------AVEQAKGDILVFTSSFNPMKNTISGRQEKTVMKLIVDAETDKVLGASMCGPDAPEIMQGIAVALKCGATKAQ 464 (499)
T ss_pred --------HHhccCCCEEEEEeecCccccccccCCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHH
Confidence 6655 5778899999999999888778899999999999999999999999999999999999999999999
Q ss_pred HhhhcccCCcccccccc
Q psy14927 519 VARTCHAHPTVCVEKND 535 (1074)
Q Consensus 519 l~~~~~~hPt~s~e~~~ 535 (1074)
|.+++|+|||++|....
T Consensus 465 l~~~~~~hPt~~E~~~~ 481 (499)
T PLN02507 465 FDSTVGIHPSAAEEFVT 481 (499)
T ss_pred HhhcCcCCCChHHHHHH
Confidence 99999999999987643
No 116
>KOG3617|consensus
Probab=99.53 E-value=1.8e-12 Score=149.51 Aligned_cols=279 Identities=19% Similarity=0.226 Sum_probs=211.0
Q ss_pred hcCCHHHHHHHHHHcCcccchhhhHhh--hcHHHHHHHhhcC---CChHHHHHHHHHHHhccCHHHHHHHHHHhhCh-hh
Q psy14927 8 KNGDIDRAIRMFEKAETHQQHVPRMLL--ENTDKLEKYIIQS---KDPVLLKWWAQYIESTEDMDLAMKYYEEARDY-LS 81 (1074)
Q Consensus 8 ~~g~~~eA~~~Ye~~~~~~~~~~~~~~--~~~~~~~~~~~~~---~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~-~~ 81 (1074)
+.|-++||..+|.++.++| =.-.+|- ++|+.+.++-... .-+.-+-+||+++|++++.+.|+++|++++.. .+
T Consensus 812 eLgMlEeA~~lYr~ckR~D-LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafe 890 (1416)
T KOG3617|consen 812 ELGMLEEALILYRQCKRYD-LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFE 890 (1416)
T ss_pred HHhhHHHHHHHHHHHHHHH-HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHH
Confidence 4689999999999999998 3334442 5898877776653 34556778899999999999999999999986 45
Q ss_pred hhhHhhccCCHHHHHHHHHhcCChHHHHHHHHHHHhcCChHHHHHHHHHhCChHHHHHHHHHhCchHHHHHHhhhcCchh
Q psy14927 82 MVRVLCFLQDFSRAAELANASGDTAAAYHLARQYENSGQFDEAIHFYSVAGSCGNAVRLCKEQALDDQLWNLALSAGPSE 161 (1074)
Q Consensus 82 ~vr~l~~~~~~~~a~~i~~~~~~~~~~~~la~~~~~~g~~~~Ai~~y~~a~~~~~A~~la~~~~~~~~~~~l~~~~~~~~ 161 (1074)
+-|+|. .+|..-...++.+++.....--|.|+|.+|+.+.|+.||-.|..|=.-+++--=.|..+....+|.+++...
T Consensus 891 v~rmL~--e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~A 968 (1416)
T KOG3617|consen 891 VFRMLK--EYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKA 968 (1416)
T ss_pred HHHHHH--hChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHH
Confidence 566653 356667788999999999999999999999999999999999988777766666778888888887766643
Q ss_pred H-HHHHHHHcc-CChhHHHHHHHHhCChHHHHHHHHhhccCCcchHHHHHHHHHHhcCCChhhHHHhhhhcchHHHHHHH
Q psy14927 162 Q-IEAATYLET-IEPDKAVLLYHKAGALHKALDLAFKLTLSNSGLVFQIKAMKCLLKSGDTNKIIFFAGVSRMKEIYVMA 239 (1074)
Q Consensus 162 ~-~~~A~~~e~-~~~~~A~~ly~kaG~~~kAl~l~~~~~~~~~~~~~~~~a~k~l~~~~~~~~~i~~a~~~r~~~l~~~a 239 (1074)
. .-+|+.||+ +++.+||++|-+|--++-|+++|-... -.+....++-.++..++ +-|
T Consensus 969 AcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd--------------------~~d~L~nlal~s~~~d~-v~a 1027 (1416)
T KOG3617|consen 969 ACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKEND--------------------MKDRLANLALMSGGSDL-VSA 1027 (1416)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcC--------------------HHHHHHHHHhhcCchhH-HHH
Confidence 2 348999999 789999999999999999999998733 33445555555555554 456
Q ss_pred HHHHhcCCCCCChhHHHHHHHHHHccCCHHHHH-------------------------HHHHHHHhHHHHhhcCHHHHHH
Q psy14927 240 ANYLQSSDWKSQPELLKSIISFYSKGKAPHLLA-------------------------NFYVSCAQVEIDEFGNYEKGLG 294 (1074)
Q Consensus 240 a~yl~~~~~~~~~~~~~~i~~~Y~k~~~~~~aa-------------------------~~~~~~a~~ei~e~~~y~~a~~ 294 (1074)
|.|++.. |..+++++.+|-|+|.+.+|- +....||.-- .+..+|+||..
T Consensus 1028 ArYyEe~-----g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF-~~~~qyekAV~ 1101 (1416)
T KOG3617|consen 1028 ARYYEEL-----GGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFF-ENNQQYEKAVN 1101 (1416)
T ss_pred HHHHHHc-----chhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHH-HhHHHHHHHHH
Confidence 6777766 357788888888888877643 3444556654 77788888887
Q ss_pred HHHHH------HHHHHhcCCCchHHHHH
Q psy14927 295 ALNEA------KRCLLKHNDSMYETLKS 316 (1074)
Q Consensus 295 ~l~~a------~~~l~~~~~~~~~~~~~ 316 (1074)
+|-.| ++.-...|.++.++|..
T Consensus 1102 lL~~ar~~~~AlqlC~~~nv~vtee~aE 1129 (1416)
T KOG3617|consen 1102 LLCLAREFSGALQLCKNRNVRVTEEFAE 1129 (1416)
T ss_pred HHHHHHHHHHHHHHHhcCCCchhHHHHH
Confidence 76543 33444456677777543
No 117
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.53 E-value=2.1e-14 Score=171.70 Aligned_cols=153 Identities=31% Similarity=0.364 Sum_probs=133.2
Q ss_pred hhhccccccccccCCceEEeccchhhc-c----HHH---HhccccccccccccccccccccccCCcceEEEEeccCCCcc
Q psy14927 372 YLEMKRNQSFRSSNTDIILPVEKWTLL-S----LAR---VLEGIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKV 443 (1074)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (1074)
.+.+..+++++||+.+||..||+.-+. . ..| |+.++......+++..+|..+..+++.+.+++++.+
T Consensus 288 ~g~i~vd~~~~t~~~~VyAiGD~~~~~~~~~~A~~~g~~aa~ni~~~~~~~~~~~~~~~~~~~~~~a~vG~te~~----- 362 (462)
T PRK06416 288 RGFIEVDEQLRTNVPNIYAIGDIVGGPMLAHKASAEGIIAAEAIAGNPHPIDYRGIPAVTYTHPEVASVGLTEAK----- 362 (462)
T ss_pred CCEEeECCCCccCCCCEEEeeecCCCcchHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEECCCceEEEeCCHHH-----
Confidence 566788999999999999999985322 1 112 244454445567777889999999999999998877
Q ss_pred cccccccCCCcEEEEeeccCccchhhhcCCCcceEEEEEECCCCcEEEEEEeCCChhHHHHHHHHHHHcCCCHHHHhhhc
Q psy14927 444 LGVHIIGPGIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAMEYGASCEDVARTC 523 (1074)
Q Consensus 444 lg~~~~~~g~~~~v~~~~~~~~~ra~~~~~~~G~~Kli~~~~~~~ilG~~iiG~~a~eli~~~a~a~~~~~~~~~l~~~~ 523 (1074)
++..|+++.+...++..++|+...+.++|++||+++++|++|||+|++|++++|+|+.+++||+.+.|+++|.+++
T Consensus 363 ----a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kli~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~ 438 (462)
T PRK06416 363 ----AKEEGFDVKVVKFPFAGNGKALALGETDGFVKLIFDKKDGEVLGAHMVGARASELIQEAQLAINWEATPEDLALTI 438 (462)
T ss_pred ----HHhcCCCeEEEEEecCcChHhHhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCc
Confidence 7888999999999999999999989999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcccccc
Q psy14927 524 HAHPTVCVEK 533 (1074)
Q Consensus 524 ~~hPt~s~e~ 533 (1074)
++|||+++.+
T Consensus 439 ~~hPt~~e~~ 448 (462)
T PRK06416 439 HPHPTLSEAL 448 (462)
T ss_pred cCCCCHHHHH
Confidence 9999999765
No 118
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=99.52 E-value=2.6e-14 Score=174.06 Aligned_cols=152 Identities=23% Similarity=0.228 Sum_probs=125.6
Q ss_pred hhcccccccccc------CCceEEeccchh-----hccHHHH---hcccccc-------------ccccccccccccccc
Q psy14927 373 LEMKRNQSFRSS------NTDIILPVEKWT-----LLSLARV---LEGIEYK-------------VGKFPFAANSRAKTN 425 (1074)
Q Consensus 373 ~~~~~~~~~~~~------~~~~~~~~~~~~-----~~~~~~~---~~~~~~~-------------~~~~~~~~~~~~~~~ 425 (1074)
+.+..|+++||+ ..+||..||..- .....|+ .+.+... ...+.+..+|.+++.
T Consensus 444 G~I~VDe~lqTs~~~~~~v~~IYAiGDv~g~~~La~~A~~qg~~aa~ni~g~~~~~~~~~~~~~~~~~~~~~~iP~~ift 523 (659)
T PTZ00153 444 GFVSVDEHLRVLREDQEVYDNIFCIGDANGKQMLAHTASHQALKVVDWIEGKGKENVNINVENWASKPIIYKNIPSVCYT 523 (659)
T ss_pred CEEeECCCCCcCCCCCCCCCCEEEEEecCCCccCHHHHHHHHHHHHHHHcCCCccccccccccccccccccCcCCEEEEC
Confidence 668899999997 579999999832 1222333 3344322 122345688999999
Q ss_pred cCCcceEEEEeccCCCcccccccccCCC--cEEEEeeccCccchhhhcCC----------------------CcceEEEE
Q psy14927 426 NDTDGFVKVLGDKLTDKVLGVHIIGPGI--EYKVGKFPFAANSRAKTNND----------------------TDGFVKVL 481 (1074)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~--~~~v~~~~~~~~~ra~~~~~----------------------~~G~~Kli 481 (1074)
+|+.++|++++.+ ++..|. ++.+...+|..+.|++.+++ ++||+||+
T Consensus 524 ~PeiA~VGlTE~e---------A~~~g~~~~v~v~~~~~~~~~ra~~~~~~~~p~~~~~~~y~~g~~~~~~~~~G~vKli 594 (659)
T PTZ00153 524 TPELAFIGLTEKE---------AKELYPPDNVGVEISFYKANSKVLCENNISFPNNSKNNSYNKGKYNTVDNTEGMVKIV 594 (659)
T ss_pred cCceEEeeCCHHH---------HHhcCCCcceEEEEEEecccchhhhccccccccccccccccccccccccCCceEEEEE
Confidence 9999999998887 666663 57788889999999987766 89999999
Q ss_pred EECCCCcEEEEEEeCCChhHHHHHHHHHHHcCCCHHHHhhhcccCCcccccc
Q psy14927 482 GDKLTDKVLGVHIIGPAAGELINEAVLAMEYGASCEDVARTCHAHPTVCVEK 533 (1074)
Q Consensus 482 ~~~~~~~ilG~~iiG~~a~eli~~~a~a~~~~~~~~~l~~~~~~hPt~s~e~ 533 (1074)
++++|++|||+|++|++|+|+|+.+++||+.++|+++|..++|+|||+++.+
T Consensus 595 ~d~~t~rILGa~ivG~~A~elI~~~a~aI~~~~tv~dl~~~~~~hPT~sE~~ 646 (659)
T PTZ00153 595 YLKDTKEILGMFIVGSYASILIHEGVLAINLKLSVKDLAHMVHSHPTISEVL 646 (659)
T ss_pred EECCCCeEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCcCCCCChHHHH
Confidence 9999999999999999999999999999999999999999999999999875
No 119
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=99.48 E-value=8e-14 Score=166.83 Aligned_cols=156 Identities=34% Similarity=0.446 Sum_probs=134.4
Q ss_pred HhhhhhccccccccccCCceEEeccchhh--------ccHHHHhcccccccc-ccccccccccccccCCcceEEEEeccC
Q psy14927 369 VDKYLEMKRNQSFRSSNTDIILPVEKWTL--------LSLARVLEGIEYKVG-KFPFAANSRAKTNNDTDGFVKVLGDKL 439 (1074)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (1074)
+++.+.++.|+++||++.+||..||+..+ .....|..++..... .+++...|..+..+++.+.+++++..
T Consensus 283 ~~~~g~i~vd~~l~t~~~~IyaiGD~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~a~vG~~~~~- 361 (461)
T TIGR01350 283 LDERGRIVVDEYMRTNVPGIYAIGDVIGGPMLAHVASHEGIVAAENIAGKEPAPIDYDAVPSCIYTDPEVASVGLTEEQ- 361 (461)
T ss_pred ECCCCcEeeCCCcccCCCCEEEeeecCCCcccHHHHHHHHHHHHHHHcCCCCCCCCCCCCCeEEecCCceEEEeCCHHH-
Confidence 45667788899999999999999998433 222333455543333 66778889999999999999988777
Q ss_pred CCcccccccccCCCcEEEEeeccCccchhhhcCCCcceEEEEEECCCCcEEEEEEeCCChhHHHHHHHHHHHcCCCHHHH
Q psy14927 440 TDKVLGVHIIGPGIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAMEYGASCEDV 519 (1074)
Q Consensus 440 ~~~~lg~~~~~~g~~~~v~~~~~~~~~ra~~~~~~~G~~Kli~~~~~~~ilG~~iiG~~a~eli~~~a~a~~~~~~~~~l 519 (1074)
++..|+++.+.+.++...+|+...+.+.||+|+++|+++++|||+|++|++++|+|+.+++|++.++|+.+|
T Consensus 362 --------a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kl~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l 433 (461)
T TIGR01350 362 --------AKEAGYDVKIGKFPFAANGKALALGETDGFVKIIADKKTGEILGAHIIGPHATELISEAVLAMELELTVEEL 433 (461)
T ss_pred --------HHhCCCCeEEEEEeCccchHHHhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHH
Confidence 777899999999999999999998999999999999999999999999999999999999999999999999
Q ss_pred hhhcccCCcccccc
Q psy14927 520 ARTCHAHPTVCVEK 533 (1074)
Q Consensus 520 ~~~~~~hPt~s~e~ 533 (1074)
.+++++|||+++.+
T Consensus 434 ~~~~~~~P~~~e~~ 447 (461)
T TIGR01350 434 AKTIHPHPTLSEAI 447 (461)
T ss_pred hcCcccCCCHHHHH
Confidence 99999999998764
No 120
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=99.48 E-value=4.6e-14 Score=149.04 Aligned_cols=175 Identities=23% Similarity=0.287 Sum_probs=103.8
Q ss_pred hhhhhccccchHHHHHHHhh-----hhhhhccccccc---cchhhhhhhhhHHHhhhh----hhHHHHhhhCCeEEEee-
Q psy14927 796 VVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVK---LNLETMMGTKSAAVKALT----GGIAHLFKSNKVTQLNG- 862 (1074)
Q Consensus 796 ~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~---~~~~~~~~~~~~~~~~l~----~~~~~~l~~~gV~~~~g- 862 (1074)
+||||||||||+.||.+|++ +++++.+..... +........ ........ ..+.+.+...++++..+
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 79 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPGTPYNSGCIPSPLLVEI-APHRHEFLPARLFKLVDQLKNRGVEIRLNA 79 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSHHHHHHSHHHHHHHHHH-HHHHHHHHHHHHGHHHHHHHHHTHEEEHHH
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEecccccccccccccccccccc-cccccccccccccccccccccceEEEeecc
Confidence 38999999999999999998 566554432221 111111111 11111111 13455556789999665
Q ss_pred eEEEecCCeEE-------EE-eCCCCeeEEEcCeEEEccCCCCC--CCCCCCC--CCcceechhhHhcchHhhHHhhcCC
Q psy14927 863 HGKITGPNTVT-------VI-KSDGSTEEVKTKNILIATGSEVT--PFPGIEV--DEETIVSSTGALSLKKGSVWGRLGA 930 (1074)
Q Consensus 863 ~v~~id~~~~~-------v~-~~~G~~~~i~~d~lIIATG~~p~--~ipgi~~--~~~~v~t~~~~~~~~~A~~l~~~G~ 930 (1074)
.+..++..... +. ...++..++.||+||||||+.|. .+||.+. ....+.++..+.... ....
T Consensus 80 ~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~------~~~~ 153 (201)
T PF07992_consen 80 KVVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSRPRTPNIPGEEVAYFLRGVDDAQRFLELL------ESPK 153 (201)
T ss_dssp TEEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTEEEEEESSTTTTTECBTTSEEHHHHHHTHS------STTS
T ss_pred ccccccccccccccCcccceeeccCCceEecCCeeeecCccccceeecCCCccccccccccccccccccc------cccc
Confidence 67777754332 21 12334478999999999999873 4454310 001222333332211 1111
Q ss_pred cEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccCCcc
Q psy14927 931 EVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRP 1010 (1074)
Q Consensus 931 ~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p 1010 (1074)
+|.++-
T Consensus 154 ~v~VvG-------------------------------------------------------------------------- 159 (201)
T PF07992_consen 154 RVAVVG-------------------------------------------------------------------------- 159 (201)
T ss_dssp EEEEES--------------------------------------------------------------------------
T ss_pred cccccc--------------------------------------------------------------------------
Confidence 333331
Q ss_pred cCCccCccccCcccCCCCCeeeCCCCCCCCCCEEEecccCCCC
Q psy14927 1011 YTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGP 1053 (1074)
Q Consensus 1011 ~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~~~~ 1053 (1074)
+.++. ...+++++++|+|.||+++||++||||++|||++.+
T Consensus 160 -~~~l~-~~~~~~~~~~g~i~vd~~~~t~~~~Iya~GD~a~~~ 200 (201)
T PF07992_consen 160 -TEFLA-EKLGVELDENGFIKVDENLQTSVPGIYAAGDCAGIY 200 (201)
T ss_dssp -TTTST-HHTTSTBTTTSSBEEBTTSBBSSTTEEE-GGGBEES
T ss_pred -ccccc-cccccccccccccccccccccccccccccccccccC
Confidence 44432 678899999999999999999999999999998754
No 121
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=99.47 E-value=1e-13 Score=165.55 Aligned_cols=154 Identities=15% Similarity=0.140 Sum_probs=125.7
Q ss_pred hhhccccccccccCCceEEeccchh--hccH-------HHHhccccc-cccccccccccccccccCCcceEEEEeccCCC
Q psy14927 372 YLEMKRNQSFRSSNTDIILPVEKWT--LLSL-------ARVLEGIEY-KVGKFPFAANSRAKTNNDTDGFVKVLGDKLTD 441 (1074)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (1074)
++.++.++++|||..+||..||... .+.. ..|..++.. .....++..+|..+..+|+.+.|++++.+
T Consensus 297 ~G~I~Vd~~~~Ts~p~IyA~GDv~~~~~~l~~~A~~~g~~aa~~i~~~~~~~~~~~~~p~~i~~~p~ia~vGlte~~--- 373 (484)
T TIGR01438 297 TGKIPADEEEQTNVPYIYAVGDILEDKQELTPVAIQAGRLLAQRLFSGSTVICDYENVPTTVFTPLEYGACGLSEEK--- 373 (484)
T ss_pred CCeEecCCCcccCCCCEEEEEEecCCCccchHHHHHHHHHHHHHHhcCCCcccccccCCeEEeCCCceeeecCCHHH---
Confidence 4668889999999999999999742 1112 222333332 22235677899999999999999998777
Q ss_pred cccccccccC-CC-cEEEEeeccCccchhhhcCC--CcceEEEEEE-CCCCcEEEEEEeCCChhHHHHHHHHHHHcCCCH
Q psy14927 442 KVLGVHIIGP-GI-EYKVGKFPFAANSRAKTNND--TDGFVKVLGD-KLTDKVLGVHIIGPAAGELINEAVLAMEYGASC 516 (1074)
Q Consensus 442 ~~lg~~~~~~-g~-~~~v~~~~~~~~~ra~~~~~--~~G~~Kli~~-~~~~~ilG~~iiG~~a~eli~~~a~a~~~~~~~ 516 (1074)
+++. |. .+.+...++..++++...++ +.||+|++++ ++|++|||+|++|++|+|+|+.+++||+.+.|+
T Consensus 374 ------a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~t~~ILG~~ivg~~a~e~I~~~a~ai~~~~t~ 447 (484)
T TIGR01438 374 ------AVEKFGEENIEVFHSYFWPLEWTIPSRDNSNKCYAKAVCNRKENERVVGFHVVGPNAGEVTQGFAAALRCGLTK 447 (484)
T ss_pred ------HHHhcCCCcEEEEEeecchhhhHhhCCCccCCcEEEEEEecCCCCeEEEEEEECCCHHHHHHHHHHHHHcCCCH
Confidence 6655 44 68888899999999888765 7899999985 579999999999999999999999999999999
Q ss_pred HHHhhhcccCCccccccc
Q psy14927 517 EDVARTCHAHPTVCVEKN 534 (1074)
Q Consensus 517 ~~l~~~~~~hPt~s~e~~ 534 (1074)
++|.+++|+|||+++.+.
T Consensus 448 ~dl~~~~~~hPt~sE~~~ 465 (484)
T TIGR01438 448 KDLDNTIGIHPVCAEVFT 465 (484)
T ss_pred HHHhhhhcCCCChHHHHH
Confidence 999999999999997653
No 122
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=99.46 E-value=6e-13 Score=163.28 Aligned_cols=112 Identities=13% Similarity=0.030 Sum_probs=76.9
Q ss_pred EEEEecCCccCCCCC---CHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCe--EEEEEeec-------c----CCC---
Q psy14927 932 VTAIEFMNAIGGMGI---DGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDN--ITVTIENV-------K----DPT--- 992 (1074)
Q Consensus 932 Vtlv~~~~~~~~~~~---~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~--~~v~~~~~-------~----~~g--- 992 (1074)
||+++|+..--+|.. ..++ +...+.||.|+.+..+.+|..++++ ..+++..- . .++
T Consensus 626 VtIvYRr~~~empA~~~~~eEv-----~~A~eEGV~f~~~~~P~~i~~d~~g~v~~l~~~~~~~~~~~~~~~~~~~~~~~ 700 (1028)
T PRK06567 626 ATVYYRGRLQDSPAYKLNHEEL-----IYALALGVDFKENMQPLRINVDKYGHVESVEFENRNRHCEQSKTAWQSHEFGL 700 (1028)
T ss_pred eEEEecCChhhCCCCCCCHHHH-----HHHHHcCcEEEecCCcEEEEecCCCeEEEEEEEEEeccccccccccccccccc
Confidence 999999887665554 2333 2335679999999999999765332 33333310 0 011
Q ss_pred ----------CceEEEcCEEEEccCCcccCCccCccccCcccCCCCCeeeCCCCCCCCCCEEEecccCCCCCcHHHHHHH
Q psy14927 993 ----------KKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGPMLAHKAEDE 1062 (1074)
Q Consensus 993 ----------~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyAiGD~~~~~~~~~~A~~~ 1062 (1074)
+..+++||.||+|+|+.||+.+.. .+..+-++.+++|+. ++..|+.+
T Consensus 701 ~~~~~~~~~~~~~~i~~~~vi~A~G~~~~~~~~~---------------~~~s~~~d~~~~f~G--------tvv~A~as 757 (1028)
T PRK06567 701 TRLPRQCYAFPRNDIKTKTVIMAIGIENNTQFDE---------------DKYSYFGDCNPKYSG--------SVVKALAS 757 (1028)
T ss_pred CCcCcccCCCccccccCCEEEEecccCCcccccc---------------cccccccCCCCcccc--------HHHHHHHH
Confidence 457899999999999999998620 112333556667765 78899999
Q ss_pred HHHHHHHhh
Q psy14927 1063 GIVCVEGIA 1071 (1074)
Q Consensus 1063 G~~aA~~I~ 1071 (1074)
|+.++.+|.
T Consensus 758 ~k~~~~~i~ 766 (1028)
T PRK06567 758 SKEGYDAIN 766 (1028)
T ss_pred HHhHHHHHH
Confidence 999999984
No 123
>KOG1538|consensus
Probab=99.46 E-value=3e-13 Score=152.37 Aligned_cols=161 Identities=12% Similarity=0.126 Sum_probs=146.9
Q ss_pred HHHH--HHhhh------hHHHHHHHHHHHHhhhcHHHHHHHHHHhhCHHHHHHHHHHcCCHHHHHHHHHhcCCcHHH--H
Q psy14927 614 KQII--LILII------YRVLLKWWAQYIESTEDMDLAMKYYEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAA--Y 683 (1074)
Q Consensus 614 ~~~~--~~~~~------~~~l~~~~a~~~e~~~~~~~A~~~y~~ag~~~~ai~~~~~~~~~~~a~~v~~~~~~~~~~--~ 683 (1074)
|||| ++.++ .++++++.|+|.-+-.+++.|++..+.||+.++||++...+++.+-++++.+..+.++.. +
T Consensus 672 RMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~ 751 (1081)
T KOG1538|consen 672 RMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLL 751 (1081)
T ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHH
Confidence 5666 44444 448999999999999999999999999999999999999999999999999866654443 3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHcCCHHHHHHH---hccHHHHHHHHHHhCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy14927 684 HLARQYENSGQFDEAIHFYSVAGSCGNAVRL---CGQLDAVESIASELNVQSDQDLILKCASYFARREHHDRAVQMYAIA 760 (1074)
Q Consensus 684 ~~A~~~~~~g~~~~A~~~~~kag~~~~Av~m---a~~w~~a~~~A~~~~~~~~~~~~~~~a~~~~~~~~~~~Ai~~y~~a 760 (1074)
.+|.+|.....+.-|.+.|.+-|+.+..|+| +++|.+|+++|+.| |+..+++|.++|+||...+++++|.+.|.++
T Consensus 752 ~~a~ylk~l~~~gLAaeIF~k~gD~ksiVqlHve~~~W~eAFalAe~h-Pe~~~dVy~pyaqwLAE~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 752 LCATYLKKLDSPGLAAEIFLKMGDLKSLVQLHVETQRWDEAFALAEKH-PEFKDDVYMPYAQWLAENDRFEEAQKAFHKA 830 (1081)
T ss_pred HHHHHHhhccccchHHHHHHHhccHHHHhhheeecccchHhHhhhhhC-ccccccccchHHHHhhhhhhHHHHHHHHHHh
Confidence 8999999999999999999999999999999 89999999999999 9999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHcCC
Q psy14927 761 RRYDQALSLIQTKHV 775 (1074)
Q Consensus 761 g~~~~Ai~~~~~~~~ 775 (1074)
|+-.+|+++++....
T Consensus 831 Gr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 831 GRQREAVQVLEQLTN 845 (1081)
T ss_pred cchHHHHHHHHHhhh
Confidence 999999999887644
No 124
>PTZ00058 glutathione reductase; Provisional
Probab=99.44 E-value=2.2e-13 Score=163.96 Aligned_cols=154 Identities=16% Similarity=0.125 Sum_probs=125.8
Q ss_pred hhhhccccccccccCCceEEeccchh----------------------------------hcc--------HHHHhcccc
Q psy14927 371 KYLEMKRNQSFRSSNTDIILPVEKWT----------------------------------LLS--------LARVLEGIE 408 (1074)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------~~~--------~~~~~~~~~ 408 (1074)
+.+.++.|+++|||+.+||..||... ++. ...|..++.
T Consensus 351 ~~G~I~VDe~lqTs~p~IYA~GDv~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~la~~A~~~g~~aa~ni~ 430 (561)
T PTZ00058 351 PKGYIKVDDNQRTSVKHIYAVGDCCMVKKNQEIEDLNLLKLYNEEPYLKKKENTSGESYYNVQLTPVAINAGRLLADRLF 430 (561)
T ss_pred CCCeEEECcCCccCCCCEEEeEeccCccccccccccccccccccccccccccccccccccCcCchHHHHHHHHHHHHHHh
Confidence 45678899999999999999999954 111 112233333
Q ss_pred cc-ccccccccccccccccCCcceEEEEeccCCCcccccccccC-CC-cEEEEeeccCccchhhhc----CCCcceEEEE
Q psy14927 409 YK-VGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGP-GI-EYKVGKFPFAANSRAKTN----NDTDGFVKVL 481 (1074)
Q Consensus 409 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~-g~-~~~v~~~~~~~~~ra~~~----~~~~G~~Kli 481 (1074)
.. ....++..+|.+++.+|+.+.|++++.+ ++.. |+ ++.+...++..+.+++.. +.++|++|++
T Consensus 431 g~~~~~~~~~~ip~~vft~peiA~vGlte~e---------A~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli 501 (561)
T PTZ00058 431 GPFSRTTNYKLIPSVIFSHPPIGTIGLSEQE---------AIDIYGKENVKIYESRFTNLFFSVYDMDPAQKEKTYLKLV 501 (561)
T ss_pred CCCCcccCCCCCCeEEeCCchheeeeCCHHH---------HHHhcCCCcEEEEEeecchhhhhhhcccccCCCCeEEEEE
Confidence 21 2223466899999999999999998877 6555 54 588888899988888754 3578999999
Q ss_pred EECCCCcEEEEEEeCCChhHHHHHHHHHHHcCCCHHHHhhhcccCCcccccc
Q psy14927 482 GDKLTDKVLGVHIIGPAAGELINEAVLAMEYGASCEDVARTCHAHPTVCVEK 533 (1074)
Q Consensus 482 ~~~~~~~ilG~~iiG~~a~eli~~~a~a~~~~~~~~~l~~~~~~hPt~s~e~ 533 (1074)
++++|++|||+|++|++|+|+|+.+++|++.+.|+++|.+++|+|||+++..
T Consensus 502 ~~~~t~~ILG~~ivG~~a~elI~~~a~ai~~~~t~~dl~~~~~~hPt~~e~~ 553 (561)
T PTZ00058 502 CVGKEELIKGLHIVGLNADEILQGFAVALKMNATKADFDETIPIHPTAAEEF 553 (561)
T ss_pred EECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhcccCCCChHHHH
Confidence 9999999999999999999999999999999999999999999999999875
No 125
>PTZ00052 thioredoxin reductase; Provisional
Probab=99.43 E-value=2.6e-13 Score=162.82 Aligned_cols=155 Identities=17% Similarity=0.138 Sum_probs=120.0
Q ss_pred HhhhhhccccccccccCCceEEeccchhh--ccHHH-------Hhccccccc-cccccccccccccccCCcceEEEEecc
Q psy14927 369 VDKYLEMKRNQSFRSSNTDIILPVEKWTL--LSLAR-------VLEGIEYKV-GKFPFAANSRAKTNNDTDGFVKVLGDK 438 (1074)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (1074)
+++.+.+..++. +||+.+||..||...+ ..... |..++.... ...++..+|.+++.+|+.++|++++..
T Consensus 292 ~~~~G~ii~~~~-~Ts~p~IyAiGDv~~~~~~l~~~A~~~g~~aa~ni~g~~~~~~~~~~~p~~ift~p~ia~vGlte~~ 370 (499)
T PTZ00052 292 VNKSNKIIAPND-CTNIPNIFAVGDVVEGRPELTPVAIKAGILLARRLFKQSNEFIDYTFIPTTIFTPIEYGACGYSSEA 370 (499)
T ss_pred ECCCCCEeeCCC-cCCCCCEEEEEEecCCCcccHHHHHHHHHHHHHHHhCCCCCcCccccCCeEEecCCcceeecCCHHH
Confidence 455555444555 9999999999996432 22222 233443222 224567789999999999999998887
Q ss_pred CCCcccccccccC-C-CcEEEEeeccCccchhhhcC---------------CCcceEEEEEECC-CCcEEEEEEeCCChh
Q psy14927 439 LTDKVLGVHIIGP-G-IEYKVGKFPFAANSRAKTNN---------------DTDGFVKVLGDKL-TDKVLGVHIIGPAAG 500 (1074)
Q Consensus 439 ~~~~~lg~~~~~~-g-~~~~v~~~~~~~~~ra~~~~---------------~~~G~~Kli~~~~-~~~ilG~~iiG~~a~ 500 (1074)
++.. | .++.+...+|..++++.... .++||+|++++++ |++|||+|++|++|+
T Consensus 371 ---------A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~~~~IlG~~ivg~~A~ 441 (499)
T PTZ00052 371 ---------AIAKYGEDDIEEYLQEFNTLEIAAVHREKHERARKDEYDFDVSSNCLAKLVCVKSEDNKVVGFHFVGPNAG 441 (499)
T ss_pred ---------HHHhcCCCCEEEEEeecccchhhccccccccccccccccccccCCceEEEEEecCCCCEEEEEEEECCCHH
Confidence 6655 4 46888888887766554322 2789999999984 899999999999999
Q ss_pred HHHHHHHHHHHcCCCHHHHhhhcccCCcccccc
Q psy14927 501 ELINEAVLAMEYGASCEDVARTCHAHPTVCVEK 533 (1074)
Q Consensus 501 eli~~~a~a~~~~~~~~~l~~~~~~hPt~s~e~ 533 (1074)
|+|+.+++||+.+.|+.+|.+++|+|||++|.+
T Consensus 442 elI~~~~~ai~~~~t~~~l~~~~~~hPt~sE~~ 474 (499)
T PTZ00052 442 EITQGFSLALKLGAKKSDFDSMIGIHPTDAEVF 474 (499)
T ss_pred HHHHHHHHHHHCCCCHHHHhcccccCCCCchhh
Confidence 999999999999999999999999999999865
No 126
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.40 E-value=2.2e-08 Score=129.68 Aligned_cols=138 Identities=17% Similarity=0.162 Sum_probs=95.4
Q ss_pred hHHHHHHHHHHHHhhhcHHHHHHHHHHhh-------CHHHHHHHHHHcCCHHHHHHHHH----hc-CCcHHHHHHHHHHH
Q psy14927 623 YRVLLKWWAQYIESTEDMDLAMKYYEEAR-------DYLSMVRVLCFLQDFSRAAELAN----AS-GDTAAAYHLARQYE 690 (1074)
Q Consensus 623 ~~~l~~~~a~~~e~~~~~~~A~~~y~~ag-------~~~~ai~~~~~~~~~~~a~~v~~----~~-~~~~~~~~~A~~~~ 690 (1074)
++......|......|+|++|.+.|.++- .+-....+|...+++++|.+..+ .. ++......+|..+.
T Consensus 702 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~ 781 (899)
T TIGR02917 702 AALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYL 781 (899)
T ss_pred ChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 45667777888888999999999998873 23456677899999999997773 22 33334448899999
Q ss_pred hcCCHHHHHHHHHHcC--CHHHHHHH---------hccHHHHHHHHHHhC--CcccHHHHHHHHHHHHHcCCHHHHHHHH
Q psy14927 691 NSGQFDEAIHFYSVAG--SCGNAVRL---------CGQLDAVESIASELN--VQSDQDLILKCASYFARREHHDRAVQMY 757 (1074)
Q Consensus 691 ~~g~~~~A~~~~~kag--~~~~Av~m---------a~~w~~a~~~A~~~~--~~~~~~~~~~~a~~~~~~~~~~~Ai~~y 757 (1074)
..|+++.|+++|-++- .|....-+ .++ .+|..+.++.. .+..+..+..+|..+...|+++.|+++|
T Consensus 782 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 860 (899)
T TIGR02917 782 AQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLL 860 (899)
T ss_pred HCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999998762 23222211 355 66666666642 2344466667777777777777777776
Q ss_pred HHhC
Q psy14927 758 AIAR 761 (1074)
Q Consensus 758 ~~ag 761 (1074)
.++-
T Consensus 861 ~~a~ 864 (899)
T TIGR02917 861 RKAV 864 (899)
T ss_pred HHHH
Confidence 6553
No 127
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.35 E-value=1.2e-07 Score=122.63 Aligned_cols=134 Identities=19% Similarity=0.157 Sum_probs=73.6
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHHHhh--------CHHHHHHHHHHcCCHHHHHHHHHh----c-CCcHHHHHHHHHHHhc
Q psy14927 626 LLKWWAQYIESTEDMDLAMKYYEEAR--------DYLSMVRVLCFLQDFSRAAELANA----S-GDTAAAYHLARQYENS 692 (1074)
Q Consensus 626 l~~~~a~~~e~~~~~~~A~~~y~~ag--------~~~~ai~~~~~~~~~~~a~~v~~~----~-~~~~~~~~~A~~~~~~ 692 (1074)
.....+......|++++|...|.++- -|....++|...+++++|.+..+. . ........+|..+...
T Consensus 569 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 648 (899)
T TIGR02917 569 PALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVM 648 (899)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc
Confidence 44455666666667777776666542 133444556666777777665531 1 2222333667777777
Q ss_pred CCHHHHHHHHHHcCCH--H--HHH-HH------hccHHHHHHHHHHhCC--cccHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy14927 693 GQFDEAIHFYSVAGSC--G--NAV-RL------CGQLDAVESIASELNV--QSDQDLILKCASYFARREHHDRAVQMYAI 759 (1074)
Q Consensus 693 g~~~~A~~~~~kag~~--~--~Av-~m------a~~w~~a~~~A~~~~~--~~~~~~~~~~a~~~~~~~~~~~Ai~~y~~ 759 (1074)
|++++|..+|.++-.. . .+. .+ .+++++|.++.+.... +..+..+..++..+...|+++.|+++|.+
T Consensus 649 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 728 (899)
T TIGR02917 649 KNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRK 728 (899)
T ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 7777777777665221 1 111 11 4666666666655422 22335555666666666666666665554
No 128
>KOG2755|consensus
Probab=99.31 E-value=2.5e-12 Score=132.15 Aligned_cols=180 Identities=19% Similarity=0.230 Sum_probs=108.4
Q ss_pred EEEecCCeEEEEeCCCCeeEEEcCeEEEccCCCCCCC-CCCCCCCccee---chhhHhcchH----------------hh
Q psy14927 864 GKITGPNTVTVIKSDGSTEEVKTKNILIATGSEVTPF-PGIEVDEETIV---SSTGALSLKK----------------GS 923 (1074)
Q Consensus 864 v~~id~~~~~v~~~~G~~~~i~~d~lIIATG~~p~~i-pgi~~~~~~v~---t~~~~~~~~~----------------A~ 923 (1074)
|..++....-+++.+| ..+.|++|+++||++|... .++ .+.++ ..+....++. |.
T Consensus 73 v~~~~s~ehci~t~~g--~~~ky~kKOG~tg~kPklq~E~~---n~~Iv~irDtDsaQllq~kl~kaK~VlilgnGgia~ 147 (334)
T KOG2755|consen 73 VVTWDSSEHCIHTQNG--EKLKYFKLCLCTGYKPKLQVEGI---NPKIVGIRDTDSAQLLQCKLVKAKIVLILGNGGIAM 147 (334)
T ss_pred hhhhccccceEEecCC--ceeeEEEEEEecCCCcceeecCC---CceEEEEecCcHHHHHHHHHhhcceEEEEecCchhH
Confidence 5566667777888999 7899999999999999432 222 22222 3333333222 33
Q ss_pred HH--hhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCC------------CEEEeCce-------------------
Q psy14927 924 VW--GRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQG------------MQFKLGTK------------------- 970 (1074)
Q Consensus 924 ~l--~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~g------------V~i~~~~~------------------- 970 (1074)
.+ --.+.+|+.....+.+...-++|.+.+.+...|...+ ++.+.+..
T Consensus 148 El~yElk~~nv~w~ikd~~IsaTFfdpGaaef~~i~l~a~~s~~~iaiKh~q~iea~pk~~~n~vg~algpDw~s~~dl~ 227 (334)
T KOG2755|consen 148 ELTYELKILNVTWKIKDEGISATFFDPGAAEFYDINLRADRSTRIIAIKHFQYIEAFPKCEENNVGPALGPDWHSQIDLQ 227 (334)
T ss_pred HHHHHhhcceeEEEecchhhhhcccCccHHHHhHhhhhcccccchhhhhhhhhhhhcCcccccCcccccCcchhhhcccc
Confidence 22 2235678877777776644566666666654441110 11111100
Q ss_pred ----------------EEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccCCcccCCccCccccCcccCCCCCeeeCC
Q psy14927 971 ----------------VTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNS 1034 (1074)
Q Consensus 971 ----------------v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~ 1034 (1074)
+..+....+...++..+. ..+.-..+.||.+++++|..||.++ .-...+.+.++|.+.||+
T Consensus 228 g~~eseer~l~~l~~~~~~~~d~~d~~sv~~~~~-ek~~~~qlt~d~ivSatgvtpn~e~--~~~~~lq~~edggikvdd 304 (334)
T KOG2755|consen 228 GISESENRSLTYLRNCVITSTDTSDNLSVHYMDK-EKMADNQLTCDFIVSATGVTPNSEW--AMNKMLQITEDGGIKVDD 304 (334)
T ss_pred cchhhhhhhhHHhhhheeeeccchhhcccccccc-cccccceeeeeEEEeccccCcCceE--EecChhhhccccCeeehh
Confidence 000000000000110000 0122346789999999999999996 556667778899999999
Q ss_pred CCCCCCCCEEEecccCC
Q psy14927 1035 RFQTVIPNIFAIGDCIH 1051 (1074)
Q Consensus 1035 ~~~ts~~~IyAiGD~~~ 1051 (1074)
.++|+.|+|||+||+++
T Consensus 305 ~m~tslpdvFa~gDvct 321 (334)
T KOG2755|consen 305 AMETSLPDVFAAGDVCT 321 (334)
T ss_pred hccccccceeeecceec
Confidence 99999999999999876
No 129
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=99.27 E-value=1.1e-11 Score=147.06 Aligned_cols=152 Identities=19% Similarity=0.146 Sum_probs=119.4
Q ss_pred HhhhhhccccccccccCCceEEeccchhh------c---------cHHH---Hhccccccc-ccc-ccccccccccccCC
Q psy14927 369 VDKYLEMKRNQSFRSSNTDIILPVEKWTL------L---------SLAR---VLEGIEYKV-GKF-PFAANSRAKTNNDT 428 (1074)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~---------~~~~---~~~~~~~~~-~~~-~~~~~~~~~~~~~~ 428 (1074)
+++++.+..|+++||++.+||..||.... + ...| +..++.... ..| ....+|.++..+++
T Consensus 253 ~~~~G~i~Vd~~~~t~~~~IyA~GD~~~~~~~~~~~~~~~~la~~A~~~a~~~a~ni~g~~~~~~~~~~~~~~~~~~~~~ 332 (438)
T PRK13512 253 LDDKGFIPVNDKFETNVPNIYAIGDIITSHYRHVDLPASVPLAWGAHRAASIVAEQIAGNDTIEFKGFLGNNIVKFFDYT 332 (438)
T ss_pred cCCCCcEEECCCcccCCCCEEEeeeeEEeeeccCCCceecccchHHHHHHHHHHHHhcCCCccccCCcccceEEEEcCce
Confidence 56677788999999999999999999531 1 1223 244454322 123 24567888999999
Q ss_pred cceEEEEeccCCCcccccccccCCCcEEEEeeccCccchhhhcCCCcceEEEEEECCCCcEEEEEEeCCC-hhHHHHHHH
Q psy14927 429 DGFVKVLGDKLTDKVLGVHIIGPGIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPA-AGELINEAV 507 (1074)
Q Consensus 429 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~v~~~~~~~~~ra~~~~~~~G~~Kli~~~~~~~ilG~~iiG~~-a~eli~~~a 507 (1074)
.+.+++++.+ ++.. ++.+...++....+.. .+.+.||+|+++|++|++|||+|++|++ ++|+|+.++
T Consensus 333 ia~vGlte~~---------a~~~--~~~~~~~~~~~~~~~~-~~~~~g~~klv~d~~~~~ilGa~~~g~~~a~e~i~~~~ 400 (438)
T PRK13512 333 FASVGVKPNE---------LKQF--DYKMVEVTQGAHANYY-PGNSPLHLRVYYDTSNRKILRAAAVGKEGADKRIDVLS 400 (438)
T ss_pred EEeecCCHHH---------HccC--CcEEEEEecCCcCCCc-CCCceEEEEEEEECCCCeEEEEEEEccccHHHHHHHHH
Confidence 9999987776 3333 4677777777776665 7889999999999999999999999997 899999999
Q ss_pred HHHHcCCCHHHHhhh-cccCCccccc
Q psy14927 508 LAMEYGASCEDVART-CHAHPTVCVE 532 (1074)
Q Consensus 508 ~a~~~~~~~~~l~~~-~~~hPt~s~e 532 (1074)
++++.+.|+++|..+ +++||+++..
T Consensus 401 ~ai~~~~t~~~l~~~~~~~~P~~~~~ 426 (438)
T PRK13512 401 MAMMNQLTVDELTEFEVAYAPPYSHP 426 (438)
T ss_pred HHHHcCCcHHHHhhcccccCCCCCcc
Confidence 999999999999996 8899998744
No 130
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=99.26 E-value=4.8e-11 Score=142.92 Aligned_cols=264 Identities=16% Similarity=0.106 Sum_probs=135.5
Q ss_pred hhhhhhccccchHHHHHHHhh-----hhhhhccccccccchhhh----------------------------hhhhh--H
Q psy14927 795 QVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLETM----------------------------MGTKS--A 839 (1074)
Q Consensus 795 ~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~~~----------------------------~~~~~--~ 839 (1074)
|+|+||||||+||.+|..+.. ++||+.+..||.+.+..- +...+ .
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~p~~~p~f~ 81 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPFPEDYPDFP 81 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-HCCCCSSSE
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCCCCCCCCCC
Confidence 459999999999999999988 899999999998764310 00000 0
Q ss_pred HHhhhhhhHHHHhhhCCeE--EEee-eEEEecC-------CeEEEEeC-CCCeeEEEcCeEEEccCCC--CC----CCCC
Q psy14927 840 AVKALTGGIAHLFKSNKVT--QLNG-HGKITGP-------NTVTVIKS-DGSTEEVKTKNILIATGSE--VT----PFPG 902 (1074)
Q Consensus 840 ~~~~l~~~~~~~l~~~gV~--~~~g-~v~~id~-------~~~~v~~~-~G~~~~i~~d~lIIATG~~--p~----~ipg 902 (1074)
...++..++..+.+.+++. +.++ +|+.+.. ...+|++. +|...+-.||+||||||-. |. .+||
T Consensus 82 ~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~~~P~~P~~~~~G 161 (531)
T PF00743_consen 82 SHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATGHFSKPNIPEPSFPG 161 (531)
T ss_dssp BHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-SSSCESB-----CT
T ss_pred CHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCCCcCCCCCChhhhhh
Confidence 1145666778888877763 6666 4665532 34667664 4444567799999999974 31 2566
Q ss_pred CCCCCcceechhhHhcchH------------------hhHHhhcCCcEEEEecCCccCCCCCCH----------------
Q psy14927 903 IEVDEETIVSSTGALSLKK------------------GSVWGRLGAEVTAIEFMNAIGGMGIDG---------------- 948 (1074)
Q Consensus 903 i~~~~~~v~t~~~~~~~~~------------------A~~l~~~G~~Vtlv~~~~~~~~~~~~~---------------- 948 (1074)
++.....++++.++..... |..+...+++|++..|++....|....
T Consensus 162 ~e~F~G~i~HS~~yr~~~~f~gKrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~~~wv~pr~~~~G~P~D~~~~~R~~~~ 241 (531)
T PF00743_consen 162 LEKFKGEIIHSKDYRDPEPFKGKRVLVVGGGNSGADIAVELSRVAKKVYLSTRRGAWVLPRYWDNGYPFDMVFSTRFSSF 241 (531)
T ss_dssp GGGHCSEEEEGGG--TGGGGTTSEEEEESSSHHHHHHHHHHTTTSCCEEEECC---------------------------
T ss_pred hhcCCeeEEccccCcChhhcCCCEEEEEeCCHhHHHHHHHHHHhcCCeEEEEeccccccccccccccccccccccccccc
Confidence 5444446777777655433 666777788899888776432222110
Q ss_pred -------HHHHHH-HHHHH--------------------------------hCCCEEEeCceEEEEEecCCeEEEEEeec
Q psy14927 949 -------EVAKQF-QRILG--------------------------------KQGMQFKLGTKVTGASKSGDNITVTIENV 988 (1074)
Q Consensus 949 -------~~~~~~-~~~l~--------------------------------~~gV~i~~~~~v~~i~~~~~~~~v~~~~~ 988 (1074)
.+...+ .+.+. ...|.+.. .|.++.+ + .|.+.|
T Consensus 242 l~~~lp~~~~~~~~~~~l~~~~~~~~~gl~p~~~~~~~~~~ind~l~~~i~~G~i~vk~--~I~~~~~--~--~v~F~D- 314 (531)
T PF00743_consen 242 LQKNLPESLSNWLLEKKLNKRFDHENYGLKPKHRFFSQHPTINDELPNRIRSGRIKVKP--DIKRFTE--N--SVIFED- 314 (531)
T ss_dssp ---------------------------------------------------------EE---EEEE-S--S--EEEETT-
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--ccccccc--c--cccccc-
Confidence 000000 00000 00111111 1222221 1 233443
Q ss_pred cCCCCceE-EEcCEEEEccCCcccCCccCccccCcccCCCCCeeeCCC-CCC--CCCCEEEecccCCCCCcHHHHHHHHH
Q psy14927 989 KDPTKKEE-LSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSR-FQT--VIPNIFAIGDCIHGPMLAHKAEDEGI 1064 (1074)
Q Consensus 989 ~~~g~~~~-i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~~G~I~Vd~~-~~t--s~~~IyAiGD~~~~~~~~~~A~~~G~ 1064 (1074)
+++ .++|.||+|||++...+++. ..-+..+ ++.+..-.+ +-. ..|++..+|=+.........+..|++
T Consensus 315 -----Gs~~e~vD~II~~TGY~~~fpFL~--~~~~~~~-~~~~~LYk~vfp~~~~~ptLafIG~~~~~g~~fp~~ElQAr 386 (531)
T PF00743_consen 315 -----GSTEEDVDVIIFCTGYKFSFPFLD--ESLIKVD-DNRVRLYKHVFPPNLDHPTLAFIGLVQPFGSIFPIFELQAR 386 (531)
T ss_dssp -----SEEEEE-SEEEE---EE---TTB---TTTT-S--SSSSSEETTTEETETTSTTEEESS-SBSSS-HHHHHHHHHH
T ss_pred -----cccccccccccccccccccccccc--ccccccc-ccccccccccccccccccccccccccccccccccccccccc
Confidence 344 47999999999999888853 3223322 222221111 112 45889999976433334567889999
Q ss_pred HHHHHhhCC
Q psy14927 1065 VCVEGIAGD 1073 (1074)
Q Consensus 1065 ~aA~~I~~~ 1073 (1074)
.+|.-+.|.
T Consensus 387 w~a~v~sG~ 395 (531)
T PF00743_consen 387 WAARVFSGR 395 (531)
T ss_dssp HHHHHHTTS
T ss_pred ccccccccc
Confidence 999877663
No 131
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=99.23 E-value=2.7e-10 Score=132.36 Aligned_cols=143 Identities=20% Similarity=0.242 Sum_probs=105.8
Q ss_pred hHHh----hcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEEeeccCCCCceEEE
Q psy14927 923 SVWG----RLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELS 998 (1074)
Q Consensus 923 ~~l~----~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~ 998 (1074)
..+. ++|.+|+++.+.+..+ +. .++.+.+.+.+++.|++++.++.|.+++.+++++.+.... +++...+.
T Consensus 233 ~v~~~L~~~LG~~V~~vp~~ppsl-pG--~rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~~~~V~~v~~~---~g~~~~i~ 306 (422)
T PRK05329 233 AVLAELEEALGCPVFELPTLPPSV-PG--LRLQNALRRAFERLGGRIMPGDEVLGAEFEGGRVTAVWTR---NHGDIPLR 306 (422)
T ss_pred HHHHHHHHHHCCCEEEeCCCCCCC-ch--HHHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCEEEEEEee---CCceEEEE
Confidence 5554 5699999998888877 44 3688889999999999999999999998766655443332 35556899
Q ss_pred cCEEEEccCCcccCCcc---------------------------------CccccCcccCCCCCeeeCCCCCCCCCCEEE
Q psy14927 999 CDALLVCVGRRPYTHNL---------------------------------GLEEIGIEKDEKGRVPVNSRFQTVIPNIFA 1045 (1074)
Q Consensus 999 ~D~vi~a~G~~p~~~~l---------------------------------~l~~~gl~ld~~G~I~Vd~~~~ts~~~IyA 1045 (1074)
+|.||+|+|+.+...+. ++...|+.+|+. +..+|...++.++|+||
T Consensus 307 AD~VVLAtGrf~s~GL~a~~~~i~Epif~l~v~~~~~r~~w~~~~~~~~~p~~~~GV~~d~~-~~p~~~~g~~~~~nl~a 385 (422)
T PRK05329 307 ARHFVLATGSFFSGGLVAERDGIREPIFGLDVLQPADRADWYQRDFFAPHPFLQFGVATDAT-LRPLDSQGGPVIENLYA 385 (422)
T ss_pred CCEEEEeCCCcccCceeccCCccccccCCCCCCCCCchhhhhhhhhccCCchhhcCceECCC-cCcccCCCCeeccceEE
Confidence 99999999987665431 123445555443 44455556677899999
Q ss_pred ecccCCCCCcH------HHHHHHHHHHHHHhhC
Q psy14927 1046 IGDCIHGPMLA------HKAEDEGIVCVEGIAG 1072 (1074)
Q Consensus 1046 iGD~~~~~~~~------~~A~~~G~~aA~~I~~ 1072 (1074)
+|++.+++..+ -.|+..|..||++|+.
T Consensus 386 ~G~vl~g~d~~~~~~g~Gva~~ta~~a~~~~~~ 418 (422)
T PRK05329 386 AGAVLGGYDPIREGCGSGVALATALHAAEQIAE 418 (422)
T ss_pred eeehhcCCchHHhCCCchhHHHHHHHHHHHHHH
Confidence 99999876543 4788899999988874
No 132
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=99.23 E-value=2e-11 Score=145.47 Aligned_cols=155 Identities=17% Similarity=0.061 Sum_probs=125.8
Q ss_pred HhhhhhccccccccccCCceEEeccchhh---------------ccHHH---Hhccccccccccccccccccc-cccCCc
Q psy14927 369 VDKYLEMKRNQSFRSSNTDIILPVEKWTL---------------LSLAR---VLEGIEYKVGKFPFAANSRAK-TNNDTD 429 (1074)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~---~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 429 (1074)
+++.+.+..|+++||+..|||..||.... ....| |+.++......+|...++-++ ..+++.
T Consensus 258 ~~~~g~i~vd~~~~t~~~~IyA~GD~~~~~~~~~~~~~~~~~~~~A~~qg~~~a~ni~g~~~~~~~~~~~~~~~~~~~~~ 337 (444)
T PRK09564 258 TLKNGAIIVDEYGETSIENIYAAGDCATIYNIVSNKNVYVPLATTANKLGRMVGENLAGRHVSFKGTLGSACIKVLDLEA 337 (444)
T ss_pred ccCCCCEEECCCcccCCCCEEEeeeEEEEEeccCCCeeeccchHHHHHHHHHHHHHhcCCCCCCCCcccceEEEECCEEE
Confidence 45667788999999999999999999532 11223 355565544456655555544 689999
Q ss_pred ceEEEEeccCCCcccccccccCCCcEEEEeeccCccchhhhcCCCcceEEEEEECCCCcEEEEEEeCCC-hhHHHHHHHH
Q psy14927 430 GFVKVLGDKLTDKVLGVHIIGPGIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPA-AGELINEAVL 508 (1074)
Q Consensus 430 ~~~~~~~~~~~~~~lg~~~~~~g~~~~v~~~~~~~~~ra~~~~~~~G~~Kli~~~~~~~ilG~~iiG~~-a~eli~~~a~ 508 (1074)
++++++..+ ++..|+++.+.+++.. ..++...+.+.||+|+++|++|++|||+|++|+. ++++|+.+++
T Consensus 338 a~vG~t~~~---------a~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~klv~~~~~~~ilG~~~~g~~~~~~~i~~~~~ 407 (444)
T PRK09564 338 ARTGLTEEE---------AKKLGIDYKTVFIKDK-NHTNYYPGQEDLYVKLIYEADTKVILGGQIIGKKGAVLRIDALAV 407 (444)
T ss_pred EEecCCHHH---------HHHCCCCeEEEEEecC-CCCCcCCCCceEEEEEEEECCCCeEEeEEEEcCccHHHHHHHHHH
Confidence 999998776 7777889999888764 4566778889999999999999999999999996 8899999999
Q ss_pred HHHcCCCHHHHhhhcccC-Ccccccc
Q psy14927 509 AMEYGASCEDVARTCHAH-PTVCVEK 533 (1074)
Q Consensus 509 a~~~~~~~~~l~~~~~~h-Pt~s~e~ 533 (1074)
|++.+.|+++|..+.++| |++++..
T Consensus 408 ~i~~~~~~~~~~~~~~~~~p~~~~~~ 433 (444)
T PRK09564 408 AIYAKLTTQELGMMDFCYAPPFARTW 433 (444)
T ss_pred HHHCCCCHHHHhhcccccCCCCCCCc
Confidence 999999999999999988 9998654
No 133
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=99.12 E-value=1.5e-10 Score=137.15 Aligned_cols=152 Identities=16% Similarity=0.083 Sum_probs=122.6
Q ss_pred HhhhhhccccccccccCCceEEeccchhh-----------cc----HHH---Hhccccccccccc-cccccccccccCCc
Q psy14927 369 VDKYLEMKRNQSFRSSNTDIILPVEKWTL-----------LS----LAR---VLEGIEYKVGKFP-FAANSRAKTNNDTD 429 (1074)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~----~~~---~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 429 (1074)
+++.+.+..++.+||++.+||..||+... .+ ..| |++++......++ ...++..+..+++.
T Consensus 245 ~~~~G~i~vd~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~~a~ni~g~~~~~~~~~~~~~~~~~~~~~ 324 (427)
T TIGR03385 245 LGETGAIWVNEKFQTSVPNIYAAGDVAESHNIITKKPAWVPLAWGANKMGRIAGENIAGNDIEFKGVLGTNITKFFDLTI 324 (427)
T ss_pred cCCCCCEEECCCcEeCCCCEEEeeeeEEeeeccCCCceeeechHHHHHHHHHHHHHhcCCCCCCCCcceeeEEEEcCeEE
Confidence 45667788899999999999999999531 11 122 2555554333332 22567888999999
Q ss_pred ceEEEEeccCCCcccccccccCCCcEEEEeeccCccchhhhcCCCcceEEEEEECCCCcEEEEEEeCCC-hhHHHHHHHH
Q psy14927 430 GFVKVLGDKLTDKVLGVHIIGPGIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPA-AGELINEAVL 508 (1074)
Q Consensus 430 ~~~~~~~~~~~~~~lg~~~~~~g~~~~v~~~~~~~~~ra~~~~~~~G~~Kli~~~~~~~ilG~~iiG~~-a~eli~~~a~ 508 (1074)
++++++..+ ++..|+++.+..+++...+++. .+.+.|++|++++++|++|||+|++|++ ++|+|+.+++
T Consensus 325 a~vG~t~~~---------a~~~g~~~~~~~~~~~~~~~~~-~~~~~g~~kli~~~~~~~ilG~~~~g~~~a~e~i~~~~~ 394 (427)
T TIGR03385 325 ASTGVTENE---------AKKLNIDYKTVFVKAKTHANYY-PGNSPLHLKLIYEKDTRRILGAQAVGKEGADKRIDVLAA 394 (427)
T ss_pred EEecCCHHH---------HHHCCCCeEEEEEecCCCCCcC-CCCceEEEEEEEECCCCeEEEEEEEccccHHHHHHHHHH
Confidence 999998877 7777889999888887766655 5788999999999999999999999999 9999999999
Q ss_pred HHHcCCCHHHHhhhcc-cCCccc
Q psy14927 509 AMEYGASCEDVARTCH-AHPTVC 530 (1074)
Q Consensus 509 a~~~~~~~~~l~~~~~-~hPt~s 530 (1074)
|++.+.|+++|.+++| .||.+.
T Consensus 395 ai~~~~t~~~l~~~~~~~~p~~~ 417 (427)
T TIGR03385 395 AIMAGLTVKDLFFFELAYAPPYS 417 (427)
T ss_pred HHHCCCCHHHHhhcccccCCCCC
Confidence 9999999999999986 678775
No 134
>PTZ00188 adrenodoxin reductase; Provisional
Probab=99.11 E-value=5e-10 Score=129.66 Aligned_cols=98 Identities=12% Similarity=0.055 Sum_probs=69.7
Q ss_pred chhhhhhccccchHHHHHHHhh------hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEeeeEEEe
Q psy14927 794 RQVVLNTLGNCAAVQANYHLAT------KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKIT 867 (1074)
Q Consensus 794 k~~VviiGgG~AGl~aA~~la~------~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~v~~i 867 (1074)
.++|+||||||||+.||.++.+ ++||+.+.+||.+++...+.+ . ..+.+...+...+...+++|+.+. .+
T Consensus 39 ~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~GVaPdh-~-~~k~v~~~f~~~~~~~~v~f~gnv--~V 114 (506)
T PTZ00188 39 PFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRYGVAPDH-I-HVKNTYKTFDPVFLSPNYRFFGNV--HV 114 (506)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEEeCCCCC-c-cHHHHHHHHHHHHhhCCeEEEeee--Ee
Confidence 4559999999999999998653 899999999999988755544 2 335666667777777889988542 12
Q ss_pred cCCeEEEEeCCCCeeEEEcCeEEEccCCCCCCCC
Q psy14927 868 GPNTVTVIKSDGSTEEVKTKNILIATGSEVTPFP 901 (1074)
Q Consensus 868 d~~~~~v~~~~G~~~~i~~d~lIIATG~~p~~ip 901 (1074)
.. .++.++ ..-.||+||+|||+.+..+|
T Consensus 115 G~---Dvt~ee---L~~~YDAVIlAtGA~~l~ip 142 (506)
T PTZ00188 115 GV---DLKMEE---LRNHYNCVIFCCGASEVSIP 142 (506)
T ss_pred cC---ccCHHH---HHhcCCEEEEEcCCCCCCCC
Confidence 11 111111 12379999999999976666
No 135
>KOG0405|consensus
Probab=99.05 E-value=2.4e-10 Score=121.98 Aligned_cols=159 Identities=20% Similarity=0.211 Sum_probs=136.2
Q ss_pred HHhhhhhccccccccccCCceEEeccc--hhhccHHHHhcccc--------ccccccccccccccccccCCcceEEEEec
Q psy14927 368 EVDKYLEMKRNQSFRSSNTDIILPVEK--WTLLSLARVLEGIE--------YKVGKFPFAANSRAKTNNDTDGFVKVLGD 437 (1074)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (1074)
++++++.+..+.|.+|+=.+||.+||. =+-||.=-.++|-. .+--+.-+..+|-++..+|..|.|++++.
T Consensus 300 k~~~~g~IivDeYq~Tnvp~I~avGDv~gk~~LTPVAiaagr~la~rlF~~~~~~kldY~nVp~vVFshP~igtVGLtE~ 379 (478)
T KOG0405|consen 300 KTDKNGAIIVDEYQNTNVPSIWAVGDVTGKINLTPVAIAAGRKLANRLFGGGKDTKLDYENVPCVVFSHPPIGTVGLTEE 379 (478)
T ss_pred eeCCCCCEEEeccccCCCCceEEeccccCcEecchHHHhhhhhHHHHhhcCCCCCccccccCceEEEecCCcccccCCHH
Confidence 689999999999999999999999999 34444322233332 23336678899999999999999999998
Q ss_pred cCCCcccccccccC-C-CcEEEEeeccCccchhhhcCCCcceEEEEEECCCCcEEEEEEeCCChhHHHHHHHHHHHcCCC
Q psy14927 438 KLTDKVLGVHIIGP-G-IEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAMEYGAS 515 (1074)
Q Consensus 438 ~~~~~~lg~~~~~~-g-~~~~v~~~~~~~~~ra~~~~~~~G~~Kli~~~~~~~ilG~~iiG~~a~eli~~~a~a~~~~~~ 515 (1074)
+ +.++ | -++.+....|.....++......-++||+++..+.+++|+|+.|+++.|+++.++.|+++|.|
T Consensus 380 E---------Aiekyg~~~i~vy~s~F~pm~~a~~~~k~kt~mKlvc~~~~eKVvG~hm~G~~s~EilQGf~VAvKmGaT 450 (478)
T KOG0405|consen 380 E---------AIEKYGKGDIKVYTSKFNPMKYAMSGRKEKTLMKLVCAGKSEKVVGVHMCGDDSAEILQGFAVAVKMGAT 450 (478)
T ss_pred H---------HHHHhCccceEEEecCCchhHhHhhcCCcceEEEEEEecCCCcEEEEEEecCCcHHHHhhhhhheecCcc
Confidence 8 4433 3 478888889998888888889999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcccCCcccccccc
Q psy14927 516 CEDVARTCHAHPTVCVEKND 535 (1074)
Q Consensus 516 ~~~l~~~~~~hPt~s~e~~~ 535 (1074)
-.|+..++..|||.++|+..
T Consensus 451 KadFD~tVaIHPTSAEElVT 470 (478)
T KOG0405|consen 451 KADFDSTVAIHPTSAEELVT 470 (478)
T ss_pred hhhhccceeecCCCHHHhee
Confidence 99999999999999999853
No 136
>KOG1800|consensus
Probab=99.01 E-value=1.3e-09 Score=118.26 Aligned_cols=112 Identities=13% Similarity=0.103 Sum_probs=75.7
Q ss_pred chhhhhhccccchHHHHHHHhh-------hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEeeeEEE
Q psy14927 794 RQVVLNTLGNCAAVQANYHLAT-------KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKI 866 (1074)
Q Consensus 794 k~~VviiGgG~AGl~aA~~la~-------~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~v~~ 866 (1074)
+++|.|||+||||+.+|..|-+ ++||+.+.+.|.+++.-.|.+.. +..+...+...++.....|+-|. .
T Consensus 20 ~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLvRyGVAPDHpE--vKnvintFt~~aE~~rfsf~gNv--~ 95 (468)
T KOG1800|consen 20 TPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLVRYGVAPDHPE--VKNVINTFTKTAEHERFSFFGNV--K 95 (468)
T ss_pred CceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccceeeeccCCCCcc--hhhHHHHHHHHhhccceEEEecc--e
Confidence 4469999999999999999877 79999999999988887666543 24555567777777777877772 2
Q ss_pred ecCCeEEEEeCCCCeeEEEcCeEEEccCCCC---CCCCCCCCCCcceechhhHh
Q psy14927 867 TGPNTVTVIKSDGSTEEVKTKNILIATGSEV---TPFPGIEVDEETIVSSTGAL 917 (1074)
Q Consensus 867 id~~~~~v~~~~G~~~~i~~d~lIIATG~~p---~~ipgi~~~~~~v~t~~~~~ 917 (1074)
+.. .+.+++ .+-.||.||||+|+.- ..|||-. ...+++...+.
T Consensus 96 vG~---dvsl~e---L~~~ydavvLaYGa~~dR~L~IPGe~--l~~V~Sarefv 141 (468)
T KOG1800|consen 96 VGR---DVSLKE---LTDNYDAVVLAYGADGDRRLDIPGEE--LSGVISAREFV 141 (468)
T ss_pred ecc---cccHHH---HhhcccEEEEEecCCCCcccCCCCcc--cccceehhhhh
Confidence 211 111111 1346999999999964 2455532 24455554443
No 137
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.87 E-value=8.4e-05 Score=99.06 Aligned_cols=127 Identities=15% Similarity=0.122 Sum_probs=90.9
Q ss_pred hhhcCCHHHHHHHHHHcCcccchhhhHhh---------hcHHHHHHHhhc-----CCChHHH----------------HH
Q psy14927 6 TMKNGDIDRAIRMFEKAETHQQHVPRMLL---------ENTDKLEKYIIQ-----SKDPVLL----------------KW 55 (1074)
Q Consensus 6 ~~~~g~~~eA~~~Ye~~~~~~~~~~~~~~---------~~~~~~~~~~~~-----~~~~~l~----------------~~ 55 (1074)
.+.+++.+.|.+.++|.-..+..-|..+. ++.+++.+++.+ ++++..+ ..
T Consensus 38 ~~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~ 117 (1157)
T PRK11447 38 GEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQ 117 (1157)
T ss_pred HHhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHH
Confidence 36778899999999988777655444442 356666666555 3555543 45
Q ss_pred HHHHHHhccCHHHHHHHHHHhhCh--h--hhh----hH-hhccCCHHHHHHHHH-----hcCChHHHHHHHHHHHhcCCh
Q psy14927 56 WAQYIESTEDMDLAMKYYEEARDY--L--SMV----RV-LCFLQDFSRAAELAN-----ASGDTAAAYHLARQYENSGQF 121 (1074)
Q Consensus 56 ~a~~~e~~~~~~~A~~~y~~a~d~--~--~~v----r~-l~~~~~~~~a~~i~~-----~~~~~~~~~~la~~~~~~g~~ 121 (1074)
.|+.+...|++++|+++|.++=.- . .+. +. ....|++++|.+..+ .+++......+|+.+...|++
T Consensus 118 ~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~ 197 (1157)
T PRK11447 118 QARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRR 197 (1157)
T ss_pred HHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCH
Confidence 577888999999999999985322 1 211 11 123488999988765 367778899999999999999
Q ss_pred HHHHHHHHHhC
Q psy14927 122 DEAIHFYSVAG 132 (1074)
Q Consensus 122 ~~Ai~~y~~a~ 132 (1074)
++|++.|.++-
T Consensus 198 ~eAl~~l~~~~ 208 (1157)
T PRK11447 198 DEGFAVLEQMA 208 (1157)
T ss_pred HHHHHHHHHHh
Confidence 99999998863
No 138
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=98.86 E-value=5e-09 Score=110.80 Aligned_cols=140 Identities=14% Similarity=0.082 Sum_probs=85.7
Q ss_pred hhhccccchHHHHHHHhh------hhhhhccccccccchh---------h-------------hhh---------hhhHH
Q psy14927 798 LNTLGNCAAVQANYHLAT------KLFTQAGDKGVKLNLE---------T-------------MMG---------TKSAA 840 (1074)
Q Consensus 798 viiGgG~AGl~aA~~la~------~l~e~~~~~g~~~~~~---------~-------------~~~---------~~~~~ 840 (1074)
+||||||+|+++|..|.+ +++|+.+..|+.+... . +.. .....
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHDFPS 80 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBSSEB
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEEeCCCCccccCccccccccCCcccccccccCCCCCCCcccCC
Confidence 589999999999999998 6888877776644210 0 000 00011
Q ss_pred HhhhhhhHHHHhhhCCeEEEee-eEEEec--CCeEEEEeCCCCeeEEEcCeEEEccCCC-CCCCCCCCC-CCcceechhh
Q psy14927 841 VKALTGGIAHLFKSNKVTQLNG-HGKITG--PNTVTVIKSDGSTEEVKTKNILIATGSE-VTPFPGIEV-DEETIVSSTG 915 (1074)
Q Consensus 841 ~~~l~~~~~~~l~~~gV~~~~g-~v~~id--~~~~~v~~~~G~~~~i~~d~lIIATG~~-p~~ipgi~~-~~~~v~t~~~ 915 (1074)
..++..++....+++++++.++ +|+.+. .+.+.|+++++ .++.+|+||+|||.. .+.+|.+++ .....+++.+
T Consensus 81 ~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~~~~--~~~~a~~VVlAtG~~~~p~~p~~~g~~~~~~~h~~~ 158 (203)
T PF13738_consen 81 GEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDGWTVTTRDG--RTIRADRVVLATGHYSHPRIPDIPGSAFRPIIHSAD 158 (203)
T ss_dssp HHHHHHHHHHHHHHTTGGEETS--EEEEEEETTTEEEEETTS---EEEEEEEEE---SSCSB---S-TTGGCSEEEEGGG
T ss_pred HHHHHHHHHHHHhhcCcccccCCEEEEEEEeccEEEEEEEec--ceeeeeeEEEeeeccCCCCccccccccccceEehhh
Confidence 2445667888888899998887 466664 34588999888 789999999999973 233455555 3335666655
Q ss_pred HhcchH------------------hhHHhhcCCcEEEEecCC
Q psy14927 916 ALSLKK------------------GSVWGRLGAEVTAIEFMN 939 (1074)
Q Consensus 916 ~~~~~~------------------A~~l~~~G~~Vtlv~~~~ 939 (1074)
+..... +..|.+.|.+||++.|++
T Consensus 159 ~~~~~~~~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~ 200 (203)
T PF13738_consen 159 WRDPEDFKGKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSP 200 (203)
T ss_dssp -STTGGCTTSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS-
T ss_pred cCChhhcCCCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCC
Confidence 544322 666677788888888775
No 139
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.83 E-value=2.3e-07 Score=102.82 Aligned_cols=211 Identities=18% Similarity=0.255 Sum_probs=134.2
Q ss_pred EEEee-eEE---EecCCe-EE--EEeCCCCeeEEEcCeEEEccCCCCCCCCCCC-CCCcceechhhHhcchH--------
Q psy14927 858 TQLNG-HGK---ITGPNT-VT--VIKSDGSTEEVKTKNILIATGSEVTPFPGIE-VDEETIVSSTGALSLKK-------- 921 (1074)
Q Consensus 858 ~~~~g-~v~---~id~~~-~~--v~~~~G~~~~i~~d~lIIATG~~p~~ipgi~-~~~~~v~t~~~~~~~~~-------- 921 (1074)
.+++| .|+ .++.+. .. +.+.++ ..+.++.|||+||.+|..+|.+. ..+..++++.+++....
T Consensus 113 ~~rfg~~V~~i~~~~~d~~~~~~~~t~~~--~~y~ar~lVlg~G~~P~IP~~f~~l~~~~vfHss~~~~~~~~~~~~~~V 190 (436)
T COG3486 113 SLRFGEEVTDISSLDGDAVVRLFVVTANG--TVYRARNLVLGVGTQPYIPPCFRSLIGERVFHSSEYLERHPELLQKRSV 190 (436)
T ss_pred ccccCCeeccccccCCcceeEEEEEcCCC--cEEEeeeEEEccCCCcCCChHHhCcCccceeehHHHHHhhHHhhcCceE
Confidence 35556 455 444332 22 444555 58999999999999985333322 12356888777774333
Q ss_pred ---------hhHHhhc-------CCcEEEEecCCccCCCC--------CCHHHHHHH-----------------------
Q psy14927 922 ---------GSVWGRL-------GAEVTAIEFMNAIGGMG--------IDGEVAKQF----------------------- 954 (1074)
Q Consensus 922 ---------A~~l~~~-------G~~Vtlv~~~~~~~~~~--------~~~~~~~~~----------------------- 954 (1074)
|+.+..+ ..++..+.|+..+.+.. |.|+..+.+
T Consensus 191 ~ViG~GQSAAEi~~~Ll~~~~~~~~~l~witR~~gf~p~d~Skf~~e~F~P~y~dyfy~l~~~~r~~ll~~~~~~YkgI~ 270 (436)
T COG3486 191 TVIGSGQSAAEIFLDLLNSQPPQDYQLNWITRSSGFLPMDYSKFGLEYFSPEYTDYFYGLPPEARDELLRKQRLLYKGIS 270 (436)
T ss_pred EEEcCCccHHHHHHHHHhCCCCcCccceeeeccCCCCccccchhhhhhcCchhHHHHhcCCHHHHHHHHhhcCccccccC
Confidence 4444332 23577888888776311 233333222
Q ss_pred ------------HHHH--HhCCCEEEeCceEEEEEecCCe-EEEEEeeccCCCCceEEEcCEEEEccCCcccCC-ccCcc
Q psy14927 955 ------------QRIL--GKQGMQFKLGTKVTGASKSGDN-ITVTIENVKDPTKKEELSCDALLVCVGRRPYTH-NLGLE 1018 (1074)
Q Consensus 955 ------------~~~l--~~~gV~i~~~~~v~~i~~~~~~-~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~-~l~l~ 1018 (1074)
++.+ .+.+|.++.++.+..++..+++ +.+.+.... +|+.+++++|.||+|||++.... ++..-
T Consensus 271 ~~ti~~Iy~~lY~~~l~~~~~~v~l~~~~ev~~~~~~G~g~~~l~~~~~~-~~~~~t~~~D~vIlATGY~~~~P~fL~~l 349 (436)
T COG3486 271 FDTIEEIYDLLYEQSLGGRKPDVRLLSLSEVQSVEPAGDGRYRLTLRHHE-TGELETVETDAVILATGYRRAVPSFLEGL 349 (436)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCeeeccccceeeeecCCCceEEEEEeecc-CCCceEEEeeEEEEecccccCCchhhhhH
Confidence 1111 2357999999999999998877 677766644 68889999999999999985444 53222
Q ss_pred ccCcccCCCCCeeeCCCCCCCC-----CCEEEecccCCC-----CCcHHHHHHHHHHHHHHhhC
Q psy14927 1019 EIGIEKDEKGRVPVNSRFQTVI-----PNIFAIGDCIHG-----PMLAHKAEDEGIVCVEGIAG 1072 (1074)
Q Consensus 1019 ~~gl~ld~~G~I~Vd~~~~ts~-----~~IyAiGD~~~~-----~~~~~~A~~~G~~aA~~I~~ 1072 (1074)
...+.+|++|...|+..++... -.||+-|-+.+. |.+...|.+.+.++ +.|+|
T Consensus 350 ~d~l~~d~~g~l~I~~dY~v~~~~~~~~~ifvqn~e~htHGig~pdLsl~a~Raa~I~-~~L~g 412 (436)
T COG3486 350 ADRLQWDDDGRLVIGRDYRVLWDGPGKGRIFVQNAELHTHGIGAPDLSLGAWRAAVIL-NSLLG 412 (436)
T ss_pred HHhhcccccCCeEecCceeeecCCCCcceEEEecccccccccCCccchHHHHHHHHHH-HHHhC
Confidence 2346789999999998776321 249999977552 55555566555543 44444
No 140
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=98.76 E-value=6.4e-08 Score=110.18 Aligned_cols=149 Identities=25% Similarity=0.313 Sum_probs=86.6
Q ss_pred EEee-eEEEecCC------eEEEEe--CCCCeeEEEcCeEEEccCCCCCCCCC-CCC-C-CcceechhhHhcchH-----
Q psy14927 859 QLNG-HGKITGPN------TVTVIK--SDGSTEEVKTKNILIATGSEVTPFPG-IEV-D-EETIVSSTGALSLKK----- 921 (1074)
Q Consensus 859 ~~~g-~v~~id~~------~~~v~~--~~G~~~~i~~d~lIIATG~~p~~ipg-i~~-~-~~~v~t~~~~~~~~~----- 921 (1074)
+.+| +|+.|++. .++|.+ .+|...++.++.||||||..|. +|. ... . ...++++.+++....
T Consensus 112 v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~ar~vVla~G~~P~-iP~~~~~~~~~~~v~Hss~~~~~~~~~~~~ 190 (341)
T PF13434_consen 112 VRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRARNVVLATGGQPR-IPEWFQDLPGSPRVFHSSEYLSRIDQSLAG 190 (341)
T ss_dssp EEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEESEEEE----EE----GGGGGGTT-TTEEEGGGHHHHHT-----
T ss_pred eEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEeCeEEECcCCCCC-CCcchhhcCCCCCEEEehHhhhccccccCC
Confidence 5555 67776542 367766 3555579999999999998874 343 221 1 367888877766542
Q ss_pred ---------------hhHHhhcC--CcEEEEecCCccCC--------CCCCHHHHHHH-----------H----------
Q psy14927 922 ---------------GSVWGRLG--AEVTAIEFMNAIGG--------MGIDGEVAKQF-----------Q---------- 955 (1074)
Q Consensus 922 ---------------A~~l~~~G--~~Vtlv~~~~~~~~--------~~~~~~~~~~~-----------~---------- 955 (1074)
+..|.+.+ .+|+++.|++.+.+ ..++|+..+.+ .
T Consensus 191 ~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~~~~d~s~f~ne~f~P~~v~~f~~l~~~~R~~~l~~~~~~ny~~ 270 (341)
T PF13434_consen 191 KRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGFFPMDDSPFVNEIFSPEYVDYFYSLPDEERRELLREQRHTNYGG 270 (341)
T ss_dssp EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-EB----CCHHGGGSHHHHHHHHTS-HHHHHHHHHHTGGGTSSE
T ss_pred CeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCccCCCccccchhhhcCchhhhhhhcCCHHHHHHHHHHhHhhcCCC
Confidence 23333344 48999999987652 11334332222 1
Q ss_pred ---------------H-HHHhCCCEEEeCceEEEEEecCC-eEEEEEeeccCCCCceEEEcCEEEEccCCc
Q psy14927 956 ---------------R-ILGKQGMQFKLGTKVTGASKSGD-NITVTIENVKDPTKKEELSCDALLVCVGRR 1009 (1074)
Q Consensus 956 ---------------~-~l~~~gV~i~~~~~v~~i~~~~~-~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~ 1009 (1074)
+ ...+..+.++.++.|..++..++ ++.+.+.+.. +++..++++|.||+|||++
T Consensus 271 i~~~~l~~iy~~lY~~~v~g~~~~~l~~~~~v~~~~~~~~~~~~l~~~~~~-~~~~~~~~~D~VilATGy~ 340 (341)
T PF13434_consen 271 IDPDLLEAIYDRLYEQRVSGRGRLRLLPNTEVTSAEQDGDGGVRLTLRHRQ-TGEEETLEVDAVILATGYR 340 (341)
T ss_dssp B-HHHHHHHHHHHHHHHHHT---SEEETTEEEEEEEEES-SSEEEEEEETT-T--EEEEEESEEEE---EE
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCeEEeCCCEEEEEEECCCCEEEEEEEECC-CCCeEEEecCEEEEcCCcc
Confidence 1 11233589999999999998874 7888888755 6778899999999999975
No 141
>PLN03077 Protein ECB2; Provisional
Probab=98.60 E-value=0.0012 Score=85.77 Aligned_cols=135 Identities=13% Similarity=0.131 Sum_probs=80.0
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHHHhh---------CHHHHHHHHHHcCCHHHHHHHHHh------cCCcHHHH-HHHHHH
Q psy14927 626 LLKWWAQYIESTEDMDLAMKYYEEAR---------DYLSMVRVLCFLQDFSRAAELANA------SGDTAAAY-HLARQY 689 (1074)
Q Consensus 626 l~~~~a~~~e~~~~~~~A~~~y~~ag---------~~~~ai~~~~~~~~~~~a~~v~~~------~~~~~~~~-~~A~~~ 689 (1074)
.+.....-+-.+|+.++|.++|.+-- -+...+..+.+.+++++|.++.+. ..+....+ -+...|
T Consensus 556 s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l 635 (857)
T PLN03077 556 SWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLL 635 (857)
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence 33334444556788999999997542 234467778999999999887732 12333444 678888
Q ss_pred HhcCCHHHHHHHHHHcC-CHHHHH--------HHhccHHHHHHHHHHhC--CcccHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy14927 690 ENSGQFDEAIHFYSVAG-SCGNAV--------RLCGQLDAVESIASELN--VQSDQDLILKCASYFARREHHDRAVQMYA 758 (1074)
Q Consensus 690 ~~~g~~~~A~~~~~kag-~~~~Av--------~ma~~w~~a~~~A~~~~--~~~~~~~~~~~a~~~~~~~~~~~Ai~~y~ 758 (1074)
...|++++|++++-+.. .|...+ .+.++.+.+.+.+++.. .+..... +..-...|.
T Consensus 636 ~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~-------------y~ll~n~ya 702 (857)
T PLN03077 636 GRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGY-------------YILLCNLYA 702 (857)
T ss_pred HhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcch-------------HHHHHHHHH
Confidence 89999999999988763 333222 01233333333333321 1112222 334445677
Q ss_pred HhCCHHHHHHHHHHc
Q psy14927 759 IARRYDQALSLIQTK 773 (1074)
Q Consensus 759 ~ag~~~~Ai~~~~~~ 773 (1074)
.+|+|+++.++-...
T Consensus 703 ~~g~~~~a~~vr~~M 717 (857)
T PLN03077 703 DAGKWDEVARVRKTM 717 (857)
T ss_pred HCCChHHHHHHHHHH
Confidence 888888887765444
No 142
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.59 E-value=1.8e-05 Score=105.32 Aligned_cols=314 Identities=16% Similarity=0.121 Sum_probs=161.9
Q ss_pred hhhcCCHHHHHHHHHHcCcccchhhh---------------------Hhh--hcHHHHHHHhhc-----CCChHHHHHHH
Q psy14927 6 TMKNGDIDRAIRMFEKAETHQQHVPR---------------------MLL--ENTDKLEKYIIQ-----SKDPVLLKWWA 57 (1074)
Q Consensus 6 ~~~~g~~~eA~~~Ye~~~~~~~~~~~---------------------~~~--~~~~~~~~~~~~-----~~~~~l~~~~a 57 (1074)
+..+|++++|+..|+++-..+..-+. .++ ++++++..+..+ ++++..+..+|
T Consensus 313 ~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg 392 (1157)
T PRK11447 313 YSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLG 392 (1157)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 45678888888888877654322110 111 245444444443 35566777778
Q ss_pred HHHHhccCHHHHHHHHHHhhCh--------hhhhhHhhccCCHHHHHHHHHhcCC--------------hHHHHHHHHHH
Q psy14927 58 QYIESTEDMDLAMKYYEEARDY--------LSMVRVLCFLQDFSRAAELANASGD--------------TAAAYHLARQY 115 (1074)
Q Consensus 58 ~~~e~~~~~~~A~~~y~~a~d~--------~~~vr~l~~~~~~~~a~~i~~~~~~--------------~~~~~~la~~~ 115 (1074)
..+...|++++|+++|.++-.. ..+.+++ ..+++++|....+.-.. ......+|+.+
T Consensus 393 ~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~-~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~ 471 (1157)
T PRK11447 393 DVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLY-RQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEAL 471 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 8888888888888888876432 1223333 23456666655442110 11233566777
Q ss_pred HhcCChHHHHHHHHHhCChH--------HHHHHHHHhCchHHHHHHh---hh-c--CchhHHHHHHHHcc-CChhHHHHH
Q psy14927 116 ENSGQFDEAIHFYSVAGSCG--------NAVRLCKEQALDDQLWNLA---LS-A--GPSEQIEAATYLET-IEPDKAVLL 180 (1074)
Q Consensus 116 ~~~g~~~~Ai~~y~~a~~~~--------~A~~la~~~~~~~~~~~l~---~~-~--~~~~~~~~A~~~e~-~~~~~A~~l 180 (1074)
...|++++|++.|.++-..+ .-..+..+.|..++..... .. . .++.....+.++.. +++++|..+
T Consensus 472 ~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~ 551 (1157)
T PRK11447 472 ENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAH 551 (1157)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 77888888877766652210 0111223333333333321 11 1 11223334455544 445555555
Q ss_pred HH-------------------------------HhCChHHHHHHHHhhccCCcchHHHHHHHHHHhcCCChhhHHHhhhh
Q psy14927 181 YH-------------------------------KAGALHKALDLAFKLTLSNSGLVFQIKAMKCLLKSGDTNKIIFFAGV 229 (1074)
Q Consensus 181 y~-------------------------------kaG~~~kAl~l~~~~~~~~~~~~~~~~a~k~l~~~~~~~~~i~~a~~ 229 (1074)
+. ..|++.+|+.++.+.+. +.. .++.-..++.+.|+.++++.+
T Consensus 552 l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~-~~~--~~~~La~~~~~~g~~~~A~~~--- 625 (1157)
T PRK11447 552 LNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPP-STR--IDLTLADWAQQRGDYAAARAA--- 625 (1157)
T ss_pred HHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCC-Cch--HHHHHHHHHHHcCCHHHHHHH---
Confidence 44 44555555554432111 000 011112223344444333332
Q ss_pred cchHHHHHHHHHHHhcC--CCCCChhHHHHHHHHHHccCCHHHHHHHHHHH--------------HhHHHHhhcCHHHHH
Q psy14927 230 SRMKEIYVMAANYLQSS--DWKSQPELLKSIISFYSKGKAPHLLANFYVSC--------------AQVEIDEFGNYEKGL 293 (1074)
Q Consensus 230 ~r~~~l~~~aa~yl~~~--~~~~~~~~~~~i~~~Y~k~~~~~~aa~~~~~~--------------a~~ei~e~~~y~~a~ 293 (1074)
++.. ....++.....+..+|...|.+++|...+..+ +... ..-|+|++|.
T Consensus 626 -------------y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~-~~~g~~~eA~ 691 (1157)
T PRK11447 626 -------------YQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAW-AALGDTAAAQ 691 (1157)
T ss_pred -------------HHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHH-HhCCCHHHHH
Confidence 2221 12334566666777788888888877655544 3333 4567777777
Q ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHH-HHHHHHHhhcCChHHHhhHHHHHHH
Q psy14927 294 GALNEAKRCLLKHNDSMYETLKSSVVE-KLAEVEIDEFGNYEKGLGALNEAKR 345 (1074)
Q Consensus 294 ~~l~~a~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~ 345 (1074)
..+..++....+. +..+...+.+ ....++.+ .|+++.|+..|+++-.
T Consensus 692 ~~~~~al~~~~~~----~~~~~~a~~~~~~a~~~~~-~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 692 RTFNRLIPQAKSQ----PPSMESALVLRDAARFEAQ-TGQPQQALETYKDAMV 739 (1157)
T ss_pred HHHHHHhhhCccC----CcchhhHHHHHHHHHHHHH-cCCHHHHHHHHHHHHh
Confidence 7766655433221 1122233333 23566667 6999999999988843
No 143
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=98.58 E-value=1.5e-07 Score=111.19 Aligned_cols=149 Identities=18% Similarity=0.132 Sum_probs=96.3
Q ss_pred chhhhhhccccchHHHHHHHhh------hhhhhccccccccchhhh-----------------hh---hhhHHHhhhhhh
Q psy14927 794 RQVVLNTLGNCAAVQANYHLAT------KLFTQAGDKGVKLNLETM-----------------MG---TKSAAVKALTGG 847 (1074)
Q Consensus 794 k~~VviiGgG~AGl~aA~~la~------~l~e~~~~~g~~~~~~~~-----------------~~---~~~~~~~~l~~~ 847 (1074)
+.+|+|||||++|+.+|+.|.+ .+||+.+..|+.+++... +. ........+..+
T Consensus 8 ~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~~~~~~~~~~~~~~y 87 (443)
T COG2072 8 HTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFRWDEAFAPFAEIKDY 87 (443)
T ss_pred cccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhccCCceEECCchheeccCCCccCCcccCCCcccHHHH
Confidence 5569999999999999999999 689999888886533211 10 000001124445
Q ss_pred HHHHhhhCCeE----EEee-eEEEec--CCeEEEEeCCCCeeEEEcCeEEEccCCC--C--CCCCCCCCCCcceechhhH
Q psy14927 848 IAHLFKSNKVT----QLNG-HGKITG--PNTVTVIKSDGSTEEVKTKNILIATGSE--V--TPFPGIEVDEETIVSSTGA 916 (1074)
Q Consensus 848 ~~~~l~~~gV~----~~~g-~v~~id--~~~~~v~~~~G~~~~i~~d~lIIATG~~--p--~~ipgi~~~~~~v~t~~~~ 916 (1074)
+...+..++++ |... ++...+ ....+|++++|...++.+|.||+|||-. | +.++|.......++++.++
T Consensus 88 ~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~~~P~iP~~~G~~~f~g~~~HS~~~ 167 (443)
T COG2072 88 IKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGHLSEPYIPDFAGLDEFKGRILHSADW 167 (443)
T ss_pred HHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecCCCCCCCCCCCCccCCCceEEchhcC
Confidence 56666666544 3333 222222 2467888888744347799999999973 3 3455555444456666665
Q ss_pred hcchH------------------hhHHhhcCCcEEEEecCCccC
Q psy14927 917 LSLKK------------------GSVWGRLGAEVTAIEFMNAIG 942 (1074)
Q Consensus 917 ~~~~~------------------A~~l~~~G~~Vtlv~~~~~~~ 942 (1074)
.+... +..|.+.|.+||++.|++...
T Consensus 168 ~~~~~~~GKrV~VIG~GaSA~di~~~l~~~ga~vt~~qRs~~~~ 211 (443)
T COG2072 168 PNPEDLRGKRVLVIGAGASAVDIAPELAEVGASVTLSQRSPPHI 211 (443)
T ss_pred CCccccCCCeEEEECCCccHHHHHHHHHhcCCeeEEEecCCCce
Confidence 54433 667788899999999987543
No 144
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=98.52 E-value=6.5e-05 Score=93.54 Aligned_cols=72 Identities=15% Similarity=0.157 Sum_probs=51.9
Q ss_pred HhhhcCCHHHHHHHHHHcCcccchh------hhHh--hhcHHHHHHHhhc-----CCChHHHHHHHHHHHhccCHHHHHH
Q psy14927 5 ETMKNGDIDRAIRMFEKAETHQQHV------PRML--LENTDKLEKYIIQ-----SKDPVLLKWWAQYIESTEDMDLAMK 71 (1074)
Q Consensus 5 ~~~~~g~~~eA~~~Ye~~~~~~~~~------~~~~--~~~~~~~~~~~~~-----~~~~~l~~~~a~~~e~~~~~~~A~~ 71 (1074)
.+...|+|++|+..|+++-...... ...| +++|.++.+...+ ++..+.|...|..+...|++++|..
T Consensus 136 ~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~ 215 (615)
T TIGR00990 136 KAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALL 215 (615)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 3456799999999999987654331 1122 2577766665544 5667788889999999999999988
Q ss_pred HHHHh
Q psy14927 72 YYEEA 76 (1074)
Q Consensus 72 ~y~~a 76 (1074)
.|..+
T Consensus 216 ~~~~~ 220 (615)
T TIGR00990 216 DLTAS 220 (615)
T ss_pred HHHHH
Confidence 76543
No 145
>KOG1399|consensus
Probab=98.45 E-value=8.2e-07 Score=103.48 Aligned_cols=125 Identities=17% Similarity=0.108 Sum_probs=79.9
Q ss_pred chhhhhhccccchHHHHHHHhh-----hhhhhccccccccchh--------hh------------------h--hhhh--
Q psy14927 794 RQVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLE--------TM------------------M--GTKS-- 838 (1074)
Q Consensus 794 k~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~--------~~------------------~--~~~~-- 838 (1074)
.++|+|||+|||||.+|..|.+ ++||+.+..||.+.+. .+ + ....
T Consensus 6 ~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~~~~~~ 85 (448)
T KOG1399|consen 6 SKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPERDPRY 85 (448)
T ss_pred CCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCCCcccCccc
Confidence 4559999999999999999999 8999999888866444 10 0 0000
Q ss_pred -HHHhhhhhhHHHHhhhCCe--EEEee-eEEEecC---CeEEEEeCCCCe--eEEEcCeEEEccCCCC-CCCCCCCCC--
Q psy14927 839 -AAVKALTGGIAHLFKSNKV--TQLNG-HGKITGP---NTVTVIKSDGST--EEVKTKNILIATGSEV-TPFPGIEVD-- 906 (1074)
Q Consensus 839 -~~~~~l~~~~~~~l~~~gV--~~~~g-~v~~id~---~~~~v~~~~G~~--~~i~~d~lIIATG~~p-~~ipgi~~~-- 906 (1074)
....++..++..+++.+++ .+.++ .|..++. +...|.+.++.. .+.-||.|++|||-.. +.+|-+++.
T Consensus 86 ~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~~~~~~ifd~VvVctGh~~~P~~P~~~g~~~ 165 (448)
T KOG1399|consen 86 FPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDNGTQIEEEIFDAVVVCTGHYVEPRIPQIPGPGI 165 (448)
T ss_pred CCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCceeEEEecCCcceeEEEeeEEEEcccCcCCCCCCcCCCCch
Confidence 0113566677788887775 34444 3444443 356676655432 5788999999999874 334444331
Q ss_pred ---CcceechhhHhc
Q psy14927 907 ---EETIVSSTGALS 918 (1074)
Q Consensus 907 ---~~~v~t~~~~~~ 918 (1074)
...++++.++..
T Consensus 166 ~~f~G~~iHS~~Yk~ 180 (448)
T KOG1399|consen 166 ESFKGKIIHSHDYKS 180 (448)
T ss_pred hhcCCcceehhhccC
Confidence 123556666553
No 146
>KOG4716|consensus
Probab=98.44 E-value=7.8e-07 Score=95.19 Aligned_cols=153 Identities=19% Similarity=0.195 Sum_probs=99.2
Q ss_pred hhccccccccccCCceEEeccchhh---ccHHHHhcc-------ccccccccccccccccccccCCcceEEEEeccCCCc
Q psy14927 373 LEMKRNQSFRSSNTDIILPVEKWTL---LSLARVLEG-------IEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDK 442 (1074)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (1074)
+.+..+..=+|+...||.+||-.-+ ||.=-.+.| .....-..-|+-++-.+..-=+-|-+++++.+.
T Consensus 319 ~KI~v~~~e~t~vp~vyAvGDIl~~kpELTPvAIqsGrlLa~Rlf~gs~q~~dy~~V~TTVFTPLEy~c~GlsEE~A--- 395 (503)
T KOG4716|consen 319 GKIPVDDEEATNVPYVYAVGDILEDKPELTPVAIQSGRLLARRLFAGSTQLMDYDDVATTVFTPLEYGCVGLSEEDA--- 395 (503)
T ss_pred CccccChHHhcCCCceEEecceecCCcccchhhhhhchHHHHHHhcCcceeeeccCCceeeecchhccccCCCHHHH---
Confidence 3444555668899999999997222 222111222 222222333444444444444555555554441
Q ss_pred ccccccccCC-CcEEEEeeccCccchhhhcC-CCcceEEEEEECC-CCcEEEEEEeCCChhHHHHHHHHHHHcCCCHHHH
Q psy14927 443 VLGVHIIGPG-IEYKVGKFPFAANSRAKTNN-DTDGFVKVLGDKL-TDKVLGVHIIGPAAGELINEAVLAMEYGASCEDV 519 (1074)
Q Consensus 443 ~lg~~~~~~g-~~~~v~~~~~~~~~ra~~~~-~~~G~~Kli~~~~-~~~ilG~~iiG~~a~eli~~~a~a~~~~~~~~~l 519 (1074)
+..-| .++++....|....-.+... ...-++|+++.++ +.+|+|.|++||+|+|+|+.++.|++.|+|..+|
T Consensus 396 -----i~k~g~dnievfH~~f~P~E~~ipqrd~~~CY~K~vc~r~~~qkv~G~H~lgPnAgEV~QGfaaAlk~glt~~~l 470 (503)
T KOG4716|consen 396 -----IEKYGEDNIEVFHSYFKPLEYTIPQRDVRHCYLKAVCERDEDQKVLGLHILGPNAGEVIQGFAAALKCGLTKKDL 470 (503)
T ss_pred -----HHHhCcccEEEeeccccceEEEcccccCCceEEEEeecccCCceEEEEEEecCchhHHHHHHHHHHHhcccHHHH
Confidence 11112 23555555555444433333 3446779999886 6799999999999999999999999999999999
Q ss_pred hhhcccCCcccccc
Q psy14927 520 ARTCHAHPTVCVEK 533 (1074)
Q Consensus 520 ~~~~~~hPt~s~e~ 533 (1074)
.++|.+|||.+++.
T Consensus 471 ~ntigIHPt~aE~F 484 (503)
T KOG4716|consen 471 DNTIGIHPTTAEEF 484 (503)
T ss_pred hhcccccccchhhe
Confidence 99999999999886
No 147
>KOG4626|consensus
Probab=98.41 E-value=1.7e-05 Score=90.90 Aligned_cols=82 Identities=16% Similarity=0.086 Sum_probs=65.3
Q ss_pred hHHHHHHHHHHHhccCHHHHHHHHHHhhC--------hhhhhhHhhccCCHHHHHHHHH-----hcCChHHHHHHHHHHH
Q psy14927 50 PVLLKWWAQYIESTEDMDLAMKYYEEARD--------YLSMVRVLCFLQDFSRAAELAN-----ASGDTAAAYHLARQYE 116 (1074)
Q Consensus 50 ~~l~~~~a~~~e~~~~~~~A~~~y~~a~d--------~~~~vr~l~~~~~~~~a~~i~~-----~~~~~~~~~~la~~~~ 116 (1074)
+.-...+|..+.+.+.|+.|..||.+|-. +.++.-+|.+.|++|.|..-.+ .++=..+.+.+|.-+.
T Consensus 252 ~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALk 331 (966)
T KOG4626|consen 252 LDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALK 331 (966)
T ss_pred hHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHH
Confidence 33455668888999999999999999644 3555666889999999987655 3455678889999999
Q ss_pred hcCChHHHHHHHHHh
Q psy14927 117 NSGQFDEAIHFYSVA 131 (1074)
Q Consensus 117 ~~g~~~~Ai~~y~~a 131 (1074)
..|++.+|+.+|-++
T Consensus 332 d~G~V~ea~~cYnka 346 (966)
T KOG4626|consen 332 DKGSVTEAVDCYNKA 346 (966)
T ss_pred hccchHHHHHHHHHH
Confidence 999999999988653
No 148
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=98.38 E-value=3.1e-06 Score=94.38 Aligned_cols=79 Identities=15% Similarity=0.277 Sum_probs=59.0
Q ss_pred HHhhcCCcEEEEecCCccCCC-CCCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEEeeccCCCCceEEEcCEE
Q psy14927 924 VWGRLGAEVTAIEFMNAIGGM-GIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDAL 1002 (1074)
Q Consensus 924 ~l~~~G~~Vtlv~~~~~~~~~-~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~v 1002 (1074)
++.++|.+-. .....++++. .-...+.+.+...+++.||+++++++|.+|+.++.+..+.+.+ +.++.||.+
T Consensus 87 ~~e~~Gi~~~-e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~~------g~~i~~d~l 159 (408)
T COG2081 87 WVEGLGIALK-EEDLGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDTSS------GETVKCDSL 159 (408)
T ss_pred HHHhcCCeeE-EccCceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCceEEEEcCC------CCEEEccEE
Confidence 5567776533 3344556522 3346788999999999999999999999999976566665444 448999999
Q ss_pred EEccCCc
Q psy14927 1003 LVCVGRR 1009 (1074)
Q Consensus 1003 i~a~G~~ 1009 (1074)
|+|+|-.
T Consensus 160 ilAtGG~ 166 (408)
T COG2081 160 ILATGGK 166 (408)
T ss_pred EEecCCc
Confidence 9999943
No 149
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.37 E-value=0.00012 Score=85.76 Aligned_cols=105 Identities=16% Similarity=0.107 Sum_probs=60.8
Q ss_pred hhcCCHHHHHHHHHHcCcccchhhhHhhhcHHHHHHHhhcCCChHHHHHHHHHHHhccCHHHHHHHHHHhhCh-------
Q psy14927 7 MKNGDIDRAIRMFEKAETHQQHVPRMLLENTDKLEKYIIQSKDPVLLKWWAQYIESTEDMDLAMKYYEEARDY------- 79 (1074)
Q Consensus 7 ~~~g~~~eA~~~Ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~------- 79 (1074)
...|++++|+.+|+++-..+. ++...+..+|..+...|++++|.+.|.++-..
T Consensus 46 ~~~~~~~~A~~~~~~al~~~p--------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~ 105 (389)
T PRK11788 46 LLNEQPDKAIDLFIEMLKVDP--------------------ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQ 105 (389)
T ss_pred HhcCChHHHHHHHHHHHhcCc--------------------ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHH
Confidence 345777777777777764442 23445556666666666666666666554321
Q ss_pred -----hhhhhHhhccCCHHHHHHHHHhc-----CChHHHHHHHHHHHhcCChHHHHHHHHHh
Q psy14927 80 -----LSMVRVLCFLQDFSRAAELANAS-----GDTAAAYHLARQYENSGQFDEAIHFYSVA 131 (1074)
Q Consensus 80 -----~~~vr~l~~~~~~~~a~~i~~~~-----~~~~~~~~la~~~~~~g~~~~Ai~~y~~a 131 (1074)
..+..+|...|++++|.++..+. .+..+...++..|.+.|++++|++.|.+.
T Consensus 106 ~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 167 (389)
T PRK11788 106 RLLALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERL 167 (389)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHH
Confidence 22244566666666666654421 23445556666666666666666665543
No 150
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.35 E-value=6.2e-06 Score=91.95 Aligned_cols=147 Identities=22% Similarity=0.254 Sum_probs=115.3
Q ss_pred hhHHHHHHHHhCChHHHHHHHHhhccCCcchHHHHHHHHHHhcCCChhhHHHhhhhcchHHHHHHHHHHHhcCCCCCChh
Q psy14927 174 PDKAVLLYHKAGALHKALDLAFKLTLSNSGLVFQIKAMKCLLKSGDTNKIIFFAGVSRMKEIYVMAANYLQSSDWKSQPE 253 (1074)
Q Consensus 174 ~~~A~~ly~kaG~~~kAl~l~~~~~~~~~~~~~~~~a~k~l~~~~~~~~~i~~a~~~r~~~l~~~aa~yl~~~~~~~~~~ 253 (1074)
|.+|++.|..+|++.+|.+.+.+ |.+|..+.++.. .....|..|++.+...+++.-..
T Consensus 38 y~~Aa~~fk~~~~~~~A~~ay~k-------------Aa~~~~~~~~~~---------~Aa~~~~~Aa~~~k~~~~~~Ai~ 95 (282)
T PF14938_consen 38 YEKAANCFKLAKDWEKAAEAYEK-------------AADCYEKLGDKF---------EAAKAYEEAANCYKKGDPDEAIE 95 (282)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHH-------------HHHHHHHTT-HH---------HHHHHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHhccchhHHHHHH-------------HHHHHHHcCCHH---------HHHHHHHHHHHHHHhhCHHHHHH
Confidence 46788889999999999999887 577777777653 33455788888888876666667
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhHHHHhh-cCHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhhcCC
Q psy14927 254 LLKSIISFYSKGKAPHLLANFYVSCAQVEIDEF-GNYEKGLGALNEAKRCLLKHNDSMYETLKSSVVEKLAEVEIDEFGN 332 (1074)
Q Consensus 254 ~~~~i~~~Y~k~~~~~~aa~~~~~~a~~ei~e~-~~y~~a~~~l~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (1074)
.+.+++.+|+..|.+..+++.+..+|..- ++. |+|++|+..|..|...++..+.. ............+++. .|+
T Consensus 96 ~~~~A~~~y~~~G~~~~aA~~~~~lA~~y-e~~~~d~e~Ai~~Y~~A~~~y~~e~~~---~~a~~~~~~~A~l~~~-l~~ 170 (282)
T PF14938_consen 96 CYEKAIEIYREAGRFSQAAKCLKELAEIY-EEQLGDYEKAIEYYQKAAELYEQEGSP---HSAAECLLKAADLYAR-LGR 170 (282)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH-CCTT--HHHHHHHHHHHHHHHHHTT-H---HHHHHHHHHHHHHHHH-TT-
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHHHHHCCCh---hhHHHHHHHHHHHHHH-hCC
Confidence 88889999999999999999999999998 777 99999999999999999998832 2234445566788888 699
Q ss_pred hHHHhhHHHHHHHHH
Q psy14927 333 YEKGLGALNEAKRCL 347 (1074)
Q Consensus 333 ~~~a~~~~~~~~~~~ 347 (1074)
|+.|+.+|.+++...
T Consensus 171 y~~A~~~~e~~~~~~ 185 (282)
T PF14938_consen 171 YEEAIEIYEEVAKKC 185 (282)
T ss_dssp HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999998854
No 151
>PLN03218 maturation of RBCL 1; Provisional
Probab=98.30 E-value=0.0008 Score=87.21 Aligned_cols=317 Identities=15% Similarity=0.128 Sum_probs=180.0
Q ss_pred hhhcCCHHHHHHHHHHcCcccchh---------hhHhh--hcHHHHHHHhhcC--CChHHHHHHHHHHHhccCHHHHHHH
Q psy14927 6 TMKNGDIDRAIRMFEKAETHQQHV---------PRMLL--ENTDKLEKYIIQS--KDPVLLKWWAQYIESTEDMDLAMKY 72 (1074)
Q Consensus 6 ~~~~g~~~eA~~~Ye~~~~~~~~~---------~~~~~--~~~~~~~~~~~~~--~~~~l~~~~a~~~e~~~~~~~A~~~ 72 (1074)
|-..|++++|.++++.+...+.-- .+.+. +....+..+.... .+...+..+-..+-..|+++.|.+.
T Consensus 380 l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k~g~~e~A~~l 459 (1060)
T PLN03218 380 LLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGALRV 459 (1060)
T ss_pred HHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHhCcCHHHHHHH
Confidence 456799999999999887554211 11111 2344444443332 3444555666777788999999999
Q ss_pred HHHhhC---------hhhhhhHhhccCCHHHHHHHHHhc------CChHHHHHHHHHHHhcCChHHHHHHHHHhC-----
Q psy14927 73 YEEARD---------YLSMVRVLCFLQDFSRAAELANAS------GDTAAAYHLARQYENSGQFDEAIHFYSVAG----- 132 (1074)
Q Consensus 73 y~~a~d---------~~~~vr~l~~~~~~~~a~~i~~~~------~~~~~~~~la~~~~~~g~~~~Ai~~y~~a~----- 132 (1074)
|..... |..++..|+..|++++|.++..+- .+......+-+.|.+.|++++|+++|....
T Consensus 460 f~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~ 539 (1060)
T PLN03218 460 LRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVK 539 (1060)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCC
Confidence 887643 467888899999999999887742 356677788888888999988887775542
Q ss_pred ----ChHHHHHHHHHhCchHHHHHHhhhc-------Cchh--HH-------------HHHHHHcc----C-----C-hhH
Q psy14927 133 ----SCGNAVRLCKEQALDDQLWNLALSA-------GPSE--QI-------------EAATYLET----I-----E-PDK 176 (1074)
Q Consensus 133 ----~~~~A~~la~~~~~~~~~~~l~~~~-------~~~~--~~-------------~~A~~~e~----~-----~-~~~ 176 (1074)
.|..-|..+-+.|.++....+.... .|+. +. ++-+.|+. + . +-.
T Consensus 540 PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tyns 619 (1060)
T PLN03218 540 PDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTI 619 (1060)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHH
Confidence 2444555555555555555443211 1111 00 11111110 0 0 122
Q ss_pred HHHHHHHhCChHHHHHHHHhhccCC--cchHHHHHHHHHHhcCCChhhHHHhhhhcchHHHHHHHHHHHhcCCCCCChhH
Q psy14927 177 AVLLYHKAGALHKALDLAFKLTLSN--SGLVFQIKAMKCLLKSGDTNKIIFFAGVSRMKEIYVMAANYLQSSDWKSQPEL 254 (1074)
Q Consensus 177 A~~ly~kaG~~~kAl~l~~~~~~~~--~~~~~~~~a~k~l~~~~~~~~~i~~a~~~r~~~l~~~aa~yl~~~~~~~~~~~ 254 (1074)
.+..|.++|++.+|++++-+....+ .....+-.-+..+.+.|+.+++..+-... ...+...+...
T Consensus 620 LI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM-------------~k~G~~pd~~t 686 (1060)
T PLN03218 620 AVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDA-------------RKQGIKLGTVS 686 (1060)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH-------------HHcCCCCCHHH
Confidence 3344455555555555554432100 00011112223334444444443332221 12234556677
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHh---------------HHHHhhcCHHHHHHHHHHHHHHHHhcCCCchHHHHHHHH
Q psy14927 255 LKSIISFYSKGKAPHLLANFYVSCAQ---------------VEIDEFGNYEKGLGALNEAKRCLLKHNDSMYETLKSSVV 319 (1074)
Q Consensus 255 ~~~i~~~Y~k~~~~~~aa~~~~~~a~---------------~ei~e~~~y~~a~~~l~~a~~~l~~~~~~~~~~~~~~~~ 319 (1074)
+..++..|.+.|.+++|..+|..+-. -- -..|++++|..++.++. +.+......--..
T Consensus 687 ynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy-~k~G~~eeAlelf~eM~----~~Gi~Pd~~Ty~s-- 759 (1060)
T PLN03218 687 YSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITAL-CEGNQLPKALEVLSEMK----RLGLCPNTITYSI-- 759 (1060)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HHCCCHHHHHHHHHHHH----HcCCCCCHHHHHH--
Confidence 88889999999999999888876622 11 24578888888866653 3344322111111
Q ss_pred HHHHHHHHhhcCChHHHhhHHHHHHH
Q psy14927 320 EKLAEVEIDEFGNYEKGLGALNEAKR 345 (1074)
Q Consensus 320 ~~~~~~~~~~~~~~~~a~~~~~~~~~ 345 (1074)
+...+.+ .|+.+.|..++.++-.
T Consensus 760 --LL~a~~k-~G~le~A~~l~~~M~k 782 (1060)
T PLN03218 760 --LLVASER-KDDADVGLDLLSQAKE 782 (1060)
T ss_pred --HHHHHHH-CCCHHHHHHHHHHHHH
Confidence 1245556 6999999998887754
No 152
>KOG4626|consensus
Probab=98.28 E-value=3.2e-05 Score=88.83 Aligned_cols=84 Identities=13% Similarity=0.214 Sum_probs=49.7
Q ss_pred hhHHHHHHHHHHccCCHHHHHHHHHH--------------HHhHHHHhhcCHHHHHHHHHHHHHHHHhcCCCchHHHHHH
Q psy14927 252 PELLKSIISFYSKGKAPHLLANFYVS--------------CAQVEIDEFGNYEKGLGALNEAKRCLLKHNDSMYETLKSS 317 (1074)
Q Consensus 252 ~~~~~~i~~~Y~k~~~~~~aa~~~~~--------------~a~~ei~e~~~y~~a~~~l~~a~~~l~~~~~~~~~~~~~~ 317 (1074)
++-+-++...|+-.+.++.|.++|.. .|..- +..|||++|..-+++|++.- ....+.+.+-
T Consensus 354 adam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~-kqqgnl~~Ai~~YkealrI~----P~fAda~~Nm 428 (966)
T KOG4626|consen 354 ADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIY-KQQGNLDDAIMCYKEALRIK----PTFADALSNM 428 (966)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHH-HhcccHHHHHHHHHHHHhcC----chHHHHHHhc
Confidence 44455555556666666666555543 35565 78899999988888887631 1111111111
Q ss_pred HHHHHHHHHHhhcCChHHHhhHHHHHHHH
Q psy14927 318 VVEKLAEVEIDEFGNYEKGLGALNEAKRC 346 (1074)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 346 (1074)
.. .|-. +|+.+.|+.||.|+-+.
T Consensus 429 Gn-----t~ke-~g~v~~A~q~y~rAI~~ 451 (966)
T KOG4626|consen 429 GN-----TYKE-MGDVSAAIQCYTRAIQI 451 (966)
T ss_pred ch-----HHHH-hhhHHHHHHHHHHHHhc
Confidence 11 1113 78889999988887554
No 153
>PF02852 Pyr_redox_dim: Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain; InterPro: IPR004099 This entry represents a dimerisation domain that is usually found at the C-terminal of both class I and class II oxidoreductases, as well as in NADH oxidases and peroxidases [, , ].; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0045454 cell redox homeostasis, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3II4_B 2A8X_A 2BC0_B 2BC1_B 2W0H_A 2X50_B 2JK6_A 2YAU_A 2EQ9_E 2EQ6_B ....
Probab=98.27 E-value=3.1e-07 Score=86.88 Aligned_cols=65 Identities=37% Similarity=0.596 Sum_probs=60.4
Q ss_pred EeccchhhccHHHH-hccccccccccccccccccccccCCcceEEEEeccCCCcccccccccCCCc
Q psy14927 390 LPVEKWTLLSLARV-LEGIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPGIE 454 (1074)
Q Consensus 390 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~ 454 (1074)
-|..|+|||||++| ++|+++++...|+..++|+...+.+.|++|++.+++|+++||.|+.+.+..
T Consensus 8 ~p~ia~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~d~~t~~IlGa~~vg~~a~ 73 (110)
T PF02852_consen 8 DPEIASVGLTEEEARKQGIDYEVVTVPFKSNDRARYYPETEGFVKLIFDKKTGRILGAQIVGPNAS 73 (110)
T ss_dssp SSEEEEEES-HHHHHHHTSGEEEEEEEEGGEHHHHHTTTTEEEEEEEEETTTTBEEEEEEEETTHH
T ss_pred CCceEEEccCHHHHHhccCceeeeeecccccchhcccCCcceeeEEEEEeeccceeeeeeecCchH
Confidence 38999999999999 999999999999999999999999999999999999999999999987643
No 154
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=98.23 E-value=0.00016 Score=90.17 Aligned_cols=106 Identities=22% Similarity=0.196 Sum_probs=71.9
Q ss_pred cCCHHHHHHHHHHcCcccchhhhHhhhcHHHHHHHhhcCCChHHHHHHHHHHHhccCHHHHHHHHHHhhC--------hh
Q psy14927 9 NGDIDRAIRMFEKAETHQQHVPRMLLENTDKLEKYIIQSKDPVLLKWWAQYIESTEDMDLAMKYYEEARD--------YL 80 (1074)
Q Consensus 9 ~g~~~eA~~~Ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d--------~~ 80 (1074)
.+++++|++.|+++-..... .......+..+|..+...|++++|..+|.++-. |.
T Consensus 307 ~~~y~~A~~~~~~al~~~~~-----------------~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~ 369 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKL-----------------GEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYI 369 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCC-----------------ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHH
Confidence 35677777777766533200 012234566677777888888888888887532 23
Q ss_pred hhhhHhhccCCHHHHHHHHH-----hcCChHHHHHHHHHHHhcCChHHHHHHHHHh
Q psy14927 81 SMVRVLCFLQDFSRAAELAN-----ASGDTAAAYHLARQYENSGQFDEAIHFYSVA 131 (1074)
Q Consensus 81 ~~vr~l~~~~~~~~a~~i~~-----~~~~~~~~~~la~~~~~~g~~~~Ai~~y~~a 131 (1074)
.+..++..+|++++|....+ .+.+....+++|..|...|++++|++.|.++
T Consensus 370 ~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ka 425 (615)
T TIGR00990 370 KRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKS 425 (615)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45555777888888877654 3456677888888888888888888888766
No 155
>KOG2003|consensus
Probab=98.22 E-value=0.00013 Score=80.83 Aligned_cols=263 Identities=17% Similarity=0.173 Sum_probs=159.2
Q ss_pred hHHhhhcCCHHHHHHHHHHcCcccchhhhHhhhcHHHHHHHhhcCCChHHHHHHHHHHHhccCHHHHHHHHHHhhChhhh
Q psy14927 3 EEETMKNGDIDRAIRMFEKAETHQQHVPRMLLENTDKLEKYIIQSKDPVLLKWWAQYIESTEDMDLAMKYYEEARDYLSM 82 (1074)
Q Consensus 3 ~~~~~~~g~~~eA~~~Ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~~~~ 82 (1074)
--||..+|+++.|++...--...|.++...--.+.. +-.|++...+-.=-.+||..+.+...|..|+.. +.
T Consensus 426 a~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~-~l~flqggk~~~~aqqyad~aln~dryn~~a~~--------nk 496 (840)
T KOG2003|consen 426 AGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLC-ALRFLQGGKDFADAQQYADIALNIDRYNAAALT--------NK 496 (840)
T ss_pred HHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhH-HHHHHhcccchhHHHHHHHHHhcccccCHHHhh--------cC
Confidence 357889999999998876666555554322111211 123344444444445566666666666655431 23
Q ss_pred hhHhhccCCHHHHHHHHHhc-----CChHHHHHHHHHHHhcCChHHHHHHHHHhCChHHHHHHHHHhCchHHHHHHhhhc
Q psy14927 83 VRVLCFLQDFSRAAELANAS-----GDTAAAYHLARQYENSGQFDEAIHFYSVAGSCGNAVRLCKEQALDDQLWNLALSA 157 (1074)
Q Consensus 83 vr~l~~~~~~~~a~~i~~~~-----~~~~~~~~la~~~~~~g~~~~Ai~~y~~a~~~~~A~~la~~~~~~~~~~~l~~~~ 157 (1074)
-.+-...|++++|.+..++. ...++.+.++--++.+|+.++|+++|.+.|. | +..
T Consensus 497 gn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~----i----------------l~n 556 (840)
T KOG2003|consen 497 GNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHA----I----------------LLN 556 (840)
T ss_pred CceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHH----H----------------HHh
Confidence 33344677777777776642 3446788999999999999999999988753 2 223
Q ss_pred CchhHHHHHHHHcc-CChhHHHHHHHHhCChHHHHHHHHhhccCCcchHHHHHHHHHHhcCCChhhHHHhhhhcchHHHH
Q psy14927 158 GPSEQIEAATYLET-IEPDKAVLLYHKAGALHKALDLAFKLTLSNSGLVFQIKAMKCLLKSGDTNKIIFFAGVSRMKEIY 236 (1074)
Q Consensus 158 ~~~~~~~~A~~~e~-~~~~~A~~ly~kaG~~~kAl~l~~~~~~~~~~~~~~~~a~k~l~~~~~~~~~i~~a~~~r~~~l~ 236 (1074)
+.+++.++|..||. .+.-+|+++|+.+..+ .-.++.+-
T Consensus 557 n~evl~qianiye~led~aqaie~~~q~~sl-----------------------------------------ip~dp~il 595 (840)
T KOG2003|consen 557 NAEVLVQIANIYELLEDPAQAIELLMQANSL-----------------------------------------IPNDPAIL 595 (840)
T ss_pred hHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-----------------------------------------CCCCHHHH
Confidence 44666778888888 6677777776654310 01223344
Q ss_pred HHHHHHHhcCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHhHHHHhhcCHHHHHHHHHHHHHHHHhcCCCchHHHHH
Q psy14927 237 VMAANYLQSSDWKSQPELLKSIISFYSKGKAPHLLANFYVSCAQVEIDEFGNYEKGLGALNEAKRCLLKHNDSMYETLKS 316 (1074)
Q Consensus 237 ~~aa~yl~~~~~~~~~~~~~~i~~~Y~k~~~~~~aa~~~~~~a~~ei~e~~~y~~a~~~l~~a~~~l~~~~~~~~~~~~~ 316 (1074)
..++++...+ .+-+++|++|-. .---|+..+-.. +=.+.|----..-..++++|+++..-+|....=
T Consensus 596 skl~dlydqe------gdksqafq~~yd-----syryfp~nie~i--ewl~ayyidtqf~ekai~y~ekaaliqp~~~kw 662 (840)
T KOG2003|consen 596 SKLADLYDQE------GDKSQAFQCHYD-----SYRYFPCNIETI--EWLAAYYIDTQFSEKAINYFEKAALIQPNQSKW 662 (840)
T ss_pred HHHHHHhhcc------cchhhhhhhhhh-----cccccCcchHHH--HHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHH
Confidence 4444444433 223444444422 111233333222 234666666677788999999998888877665
Q ss_pred HHHHHHHHHHHhhcCChHHHhhHHHHHHHHHhhccCcc
Q psy14927 317 SVVEKLAEVEIDEFGNYEKGLGALNEAKRCLLKHNDSM 354 (1074)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 354 (1074)
.||.. .-+-+ .|+|.+|..+|+..- ++||..+
T Consensus 663 qlmia--sc~rr-sgnyqka~d~yk~~h---rkfpedl 694 (840)
T KOG2003|consen 663 QLMIA--SCFRR-SGNYQKAFDLYKDIH---RKFPEDL 694 (840)
T ss_pred HHHHH--HHHHh-cccHHHHHHHHHHHH---HhCccch
Confidence 56632 22223 499999999998764 5699764
No 156
>PLN03218 maturation of RBCL 1; Provisional
Probab=98.22 E-value=0.0013 Score=85.37 Aligned_cols=268 Identities=14% Similarity=0.096 Sum_probs=153.1
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHhhC-----hhhhhhHhhccCCHHHHHHHHHh---c---CChHHHHHHHHHHHhcCCh
Q psy14927 53 LKWWAQYIESTEDMDLAMKYYEEARD-----YLSMVRVLCFLQDFSRAAELANA---S---GDTAAAYHLARQYENSGQF 121 (1074)
Q Consensus 53 ~~~~a~~~e~~~~~~~A~~~y~~a~d-----~~~~vr~l~~~~~~~~a~~i~~~---~---~~~~~~~~la~~~~~~g~~ 121 (1074)
+..+-+.+...|.+++|.++|..-.. |..+++.++..|++++|.++.++ . .+......+-..|.+.|++
T Consensus 409 ~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~v 488 (1060)
T PLN03218 409 HAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKV 488 (1060)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCH
Confidence 33445667788999999999977544 56778889999999999998873 2 2556667777888888887
Q ss_pred HHHHHH----------------------HHHhCChHHHHHHHHHh---Cc------hHHHHHHhhhcCchhHHHHHHHHc
Q psy14927 122 DEAIHF----------------------YSVAGSCGNAVRLCKEQ---AL------DDQLWNLALSAGPSEQIEAATYLE 170 (1074)
Q Consensus 122 ~~Ai~~----------------------y~~a~~~~~A~~la~~~---~~------~~~~~~l~~~~~~~~~~~~A~~~e 170 (1074)
++|.++ |.+.|++++|+++-.+. |. +..++........ +..+-++|+
T Consensus 489 d~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~--~deA~~lf~ 566 (1060)
T PLN03218 489 DAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGA--VDRAFDVLA 566 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCC--HHHHHHHHH
Confidence 776554 45555566665554332 10 0011111111111 111222221
Q ss_pred c------C---C---hhHHHHHHHHhCChHHHHHHHHhhccCC--cchHHHHHHHHHHhcCCChhhHHHhhhhcchHHHH
Q psy14927 171 T------I---E---PDKAVLLYHKAGALHKALDLAFKLTLSN--SGLVFQIKAMKCLLKSGDTNKIIFFAGVSRMKEIY 236 (1074)
Q Consensus 171 ~------~---~---~~~A~~ly~kaG~~~kAl~l~~~~~~~~--~~~~~~~~a~k~l~~~~~~~~~i~~a~~~r~~~l~ 236 (1074)
+ + + +-.-+..|.++|++.+|.+++......+ .....|-..+..+.+.|+.++++.+-...+.
T Consensus 567 eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~---- 642 (1060)
T PLN03218 567 EMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKK---- 642 (1060)
T ss_pred HHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH----
Confidence 1 0 1 2234556777777777777766543211 0112234445556667776666655443332
Q ss_pred HHHHHHHhcCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHH---------------hHHHHhhcCHHHHHHHHHHHHH
Q psy14927 237 VMAANYLQSSDWKSQPELLKSIISFYSKGKAPHLLANFYVSCA---------------QVEIDEFGNYEKGLGALNEAKR 301 (1074)
Q Consensus 237 ~~aa~yl~~~~~~~~~~~~~~i~~~Y~k~~~~~~aa~~~~~~a---------------~~ei~e~~~y~~a~~~l~~a~~ 301 (1074)
.....+...+..++..|.+.+.+++|-.++..+- ..- -..|++++|...+.++.
T Consensus 643 ---------~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay-~k~G~~eeA~~lf~eM~- 711 (1060)
T PLN03218 643 ---------KGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGAC-SNAKNWKKALELYEDIK- 711 (1060)
T ss_pred ---------cCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HhCCCHHHHHHHHHHHH-
Confidence 1223444566677788888888887765555442 222 34577788877765543
Q ss_pred HHHhcCCCchHHHHHHHHHHHHHHHHhhcCChHHHhhHHHHHHH
Q psy14927 302 CLLKHNDSMYETLKSSVVEKLAEVEIDEFGNYEKGLGALNEAKR 345 (1074)
Q Consensus 302 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 345 (1074)
+.+......... .+...|.+ .|+.+.|.+++.+...
T Consensus 712 ---~~g~~PdvvtyN----~LI~gy~k-~G~~eeAlelf~eM~~ 747 (1060)
T PLN03218 712 ---SIKLRPTVSTMN----ALITALCE-GNQLPKALEVLSEMKR 747 (1060)
T ss_pred ---HcCCCCCHHHHH----HHHHHHHH-CCCHHHHHHHHHHHHH
Confidence 333322211111 23455667 6999999998888754
No 157
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=98.18 E-value=0.00038 Score=88.06 Aligned_cols=316 Identities=13% Similarity=0.061 Sum_probs=157.7
Q ss_pred hhhcCCHHHHHHHHHHcCcccc--------hhhhHhh--hcHHHHHHHhhcCCC--hHHHHHHHHHHHhccCHHHHHHHH
Q psy14927 6 TMKNGDIDRAIRMFEKAETHQQ--------HVPRMLL--ENTDKLEKYIIQSKD--PVLLKWWAQYIESTEDMDLAMKYY 73 (1074)
Q Consensus 6 ~~~~g~~~eA~~~Ye~~~~~~~--------~~~~~~~--~~~~~~~~~~~~~~~--~~l~~~~a~~~e~~~~~~~A~~~y 73 (1074)
+-..++++.|.+++........ .+..+|. ++++.+.++...... ...|...-..+-..|++++|.+.|
T Consensus 133 ~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf 212 (697)
T PLN03081 133 CIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALF 212 (697)
T ss_pred HHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHH
Confidence 3455677777777766543221 1123332 356666666666433 335555566666778888888888
Q ss_pred HHhhC---------h-----------------------------------hhhhhHhhccCCHHHHHHHHHh--cCChHH
Q psy14927 74 EEARD---------Y-----------------------------------LSMVRVLCFLQDFSRAAELANA--SGDTAA 107 (1074)
Q Consensus 74 ~~a~d---------~-----------------------------------~~~vr~l~~~~~~~~a~~i~~~--~~~~~~ 107 (1074)
..... | .+++..|++.|++++|.++..+ ..+...
T Consensus 213 ~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt 292 (697)
T PLN03081 213 REMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVA 292 (697)
T ss_pred HHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhH
Confidence 76421 2 2344455555555555555542 233344
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhCC---------hHHHHHHHHHhCchHHHHHHhhhcCchhHHHHHHHHccC---C--
Q psy14927 108 AYHLARQYENSGQFDEAIHFYSVAGS---------CGNAVRLCKEQALDDQLWNLALSAGPSEQIEAATYLETI---E-- 173 (1074)
Q Consensus 108 ~~~la~~~~~~g~~~~Ai~~y~~a~~---------~~~A~~la~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~~---~-- 173 (1074)
...+..-|.+.|++++|+++|.+... |...+..|-+.|..+....+ .....+.+ +
T Consensus 293 ~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i-----------~~~m~~~g~~~d~~ 361 (697)
T PLN03081 293 WNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQA-----------HAGLIRTGFPLDIV 361 (697)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHH-----------HHHHHHhCCCCCee
Confidence 44555555555555555555533210 11111111111111111111 11111222 1
Q ss_pred -hhHHHHHHHHhCChHHHHHHHHhhccCCcchHHHHHHHHHHhcCCChhhHHHhhhhcchH-------------------
Q psy14927 174 -PDKAVLLYHKAGALHKALDLAFKLTLSNSGLVFQIKAMKCLLKSGDTNKIIFFAGVSRMK------------------- 233 (1074)
Q Consensus 174 -~~~A~~ly~kaG~~~kAl~l~~~~~~~~~~~~~~~~a~k~l~~~~~~~~~i~~a~~~r~~------------------- 233 (1074)
+-.-+..|.|+|++++|.+++-+....| ..-|-.-+..+.+.|+.++++.+-......
T Consensus 362 ~~~~Li~~y~k~G~~~~A~~vf~~m~~~d--~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~ 439 (697)
T PLN03081 362 ANTALVDLYSKWGRMEDARNVFDRMPRKN--LISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYS 439 (697)
T ss_pred ehHHHHHHHHHCCCHHHHHHHHHhCCCCC--eeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcC
Confidence 2446778888888888888887754322 122323344445555555555444433221
Q ss_pred HHHHHHHHHHhcC----CCCCChhHHHHHHHHHHccCCHHHHHHHHHHHH------------hHHHHhhcCHHHHHHHHH
Q psy14927 234 EIYVMAANYLQSS----DWKSQPELLKSIISFYSKGKAPHLLANFYVSCA------------QVEIDEFGNYEKGLGALN 297 (1074)
Q Consensus 234 ~l~~~aa~yl~~~----~~~~~~~~~~~i~~~Y~k~~~~~~aa~~~~~~a------------~~ei~e~~~y~~a~~~l~ 297 (1074)
.....+-++++.. .+..+...+..++..|.++|.+++|-.++.... ... ...||++.|..++.
T Consensus 440 g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~-~~~g~~~~a~~~~~ 518 (697)
T PLN03081 440 GLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTAC-RIHKNLELGRLAAE 518 (697)
T ss_pred CcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHH-HHcCCcHHHHHHHH
Confidence 1112233333322 233333456678888889999888887765431 122 34566666665544
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHHHHHHHHhhcCChHHHhhHHHHHHH
Q psy14927 298 EAKRCLLKHNDSMYETLKSSVVEKLAEVEIDEFGNYEKGLGALNEAKR 345 (1074)
Q Consensus 298 ~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 345 (1074)
.. .+.+.... . .-..+..+|.+ .|+.+.|.+++.+...
T Consensus 519 ~l----~~~~p~~~---~--~y~~L~~~y~~-~G~~~~A~~v~~~m~~ 556 (697)
T PLN03081 519 KL----YGMGPEKL---N--NYVVLLNLYNS-SGRQAEAAKVVETLKR 556 (697)
T ss_pred HH----hCCCCCCC---c--chHHHHHHHHh-CCCHHHHHHHHHHHHH
Confidence 33 22221111 0 01133567777 6888888887776654
No 158
>KOG1920|consensus
Probab=98.17 E-value=2.5e-05 Score=96.12 Aligned_cols=154 Identities=15% Similarity=0.110 Sum_probs=113.1
Q ss_pred ccCHHHHHHHHHHHHHHHHH----HHHHHhhhCccchhhHHHHHHHhhh---hHHHHHHHHHHHHhhhcHHHHHHHHHHh
Q psy14927 578 KLNLETMMGTKSAAVKALTG----GIAHLFKSNKALKIITKQIILILII---YRVLLKWWAQYIESTEDMDLAMKYYEEA 650 (1074)
Q Consensus 578 ~~~w~~~~~~~~~~i~~l~~----~~~~~l~~~~i~~~~~~~~~~~~~~---~~~l~~~~a~~~e~~~~~~~A~~~y~~a 650 (1074)
+|.+..+.++..+-+..|.. +++..++=-.-++-|+.+..|-+.. ...++..||.++.+...|++|.-.|..+
T Consensus 886 kF~ID~~L~ry~~AL~hLs~~~~~~~~e~~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~ 965 (1265)
T KOG1920|consen 886 KFKIDDYLKRYEDALSHLSECGETYFPECKNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERC 965 (1265)
T ss_pred heeHHHHHHHHHHHHHHHHHcCccccHHHHHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHh
Confidence 47777777777666666652 3333332222223356666654444 3378899999999999999999999999
Q ss_pred hCHHHHHHHHHHcCCHHHHHHHHHhcCCcHHH-----HHHHHHHHhcCCHHH-HHHHHHHcCCHHHHHHH---hccHHHH
Q psy14927 651 RDYLSMVRVLCFLQDFSRAAELANASGDTAAA-----YHLARQYENSGQFDE-AIHFYSVAGSCGNAVRL---CGQLDAV 721 (1074)
Q Consensus 651 g~~~~ai~~~~~~~~~~~a~~v~~~~~~~~~~-----~~~A~~~~~~g~~~~-A~~~~~kag~~~~Av~m---a~~w~~a 721 (1074)
|+.++|+.+|.+.++|++|+.++......... ..++.-|...|.+-+ |.-...-+++|++||.+ +..|++|
T Consensus 966 GklekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd~~~av~ll~ka~~~~eA 1045 (1265)
T KOG1920|consen 966 GKLEKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLSDPEEAVALLCKAKEWEEA 1045 (1265)
T ss_pred ccHHHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcCHHHHHHHHhhHhHHHHH
Confidence 99999999999999999999999744332222 245666666666555 45555667999999988 8999999
Q ss_pred HHHHHHhCCc
Q psy14927 722 ESIASELNVQ 731 (1074)
Q Consensus 722 ~~~A~~~~~~ 731 (1074)
.|+|..+...
T Consensus 1046 lrva~~~~~~ 1055 (1265)
T KOG1920|consen 1046 LRVASKAKRD 1055 (1265)
T ss_pred HHHHHhcccc
Confidence 9999999543
No 159
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.13 E-value=0.0002 Score=82.68 Aligned_cols=123 Identities=17% Similarity=0.231 Sum_probs=82.0
Q ss_pred CCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccCCc-cc-----CCccCccc
Q psy14927 946 IDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRR-PY-----THNLGLEE 1019 (1074)
Q Consensus 946 ~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~-p~-----~~~l~l~~ 1019 (1074)
.+..+.+.+.+.+++.|+.++.+..|.++..+++.+.....+ ++....+.+|.+|+|+|.- .. .+-+...-
T Consensus 261 ~G~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~~~~v~~V~t~---~g~~~~l~AD~vVLAaGaw~S~gL~a~l~~i~Epi 337 (419)
T TIGR03378 261 LGIRLEEALKHRFEQLGGVMLPGDRVLRAEFEGNRVTRIHTR---NHRDIPLRADHFVLASGSFFSNGLVAEFDKIYEPI 337 (419)
T ss_pred cHHHHHHHHHHHHHHCCCEEEECcEEEEEEeeCCeEEEEEec---CCccceEECCEEEEccCCCcCHHHHhhcCceeeec
Confidence 346777888899999999999999999998766654433222 2323579999999999976 21 11110111
Q ss_pred cCccc----C-----CC----------CCeeeCCCCCC-----CCCCEEEecccCCCCC------cHHHHHHHHHHHHHH
Q psy14927 1020 IGIEK----D-----EK----------GRVPVNSRFQT-----VIPNIFAIGDCIHGPM------LAHKAEDEGIVCVEG 1069 (1074)
Q Consensus 1020 ~gl~l----d-----~~----------G~I~Vd~~~~t-----s~~~IyAiGD~~~~~~------~~~~A~~~G~~aA~~ 1069 (1074)
.++.+ + .. =.|.||+.+|. .++|+|++|-+.++.. -.-.|+..|..||.+
T Consensus 338 f~L~v~~~~~r~~W~~~~ff~~~p~~~~GV~~d~~lrp~~~g~~~~Nl~a~G~vL~G~d~~~~gcG~GVai~Ta~~aa~~ 417 (419)
T TIGR03378 338 FGLDVLQLPDRDQWYQHRFFAPHPFMQFGVKTDAQLRPSRGGQTIENLYAIGAVLGGYDPIFEGCGSGVAVSTALHAAEQ 417 (419)
T ss_pred cCCCcCCCcchhhhcchhhcCCChhhhcCceEccccCccCCCcccccceEechhhcCCChHhcCCCchhHHHHHHHHHHh
Confidence 12221 0 00 12678888883 3899999999887532 234788999999988
Q ss_pred hh
Q psy14927 1070 IA 1071 (1074)
Q Consensus 1070 I~ 1071 (1074)
|+
T Consensus 418 i~ 419 (419)
T TIGR03378 418 II 419 (419)
T ss_pred hC
Confidence 74
No 160
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.13 E-value=0.0004 Score=86.76 Aligned_cols=126 Identities=11% Similarity=0.117 Sum_probs=87.5
Q ss_pred HhhhcCCHHHHHHHHHHcCccc---chhhhHh------hhcHHHHHHHhhc-----CCChHHHHHHHHHHHhccCHHHHH
Q psy14927 5 ETMKNGDIDRAIRMFEKAETHQ---QHVPRML------LENTDKLEKYIIQ-----SKDPVLLKWWAQYIESTEDMDLAM 70 (1074)
Q Consensus 5 ~~~~~g~~~eA~~~Ye~~~~~~---~~~~~~~------~~~~~~~~~~~~~-----~~~~~l~~~~a~~~e~~~~~~~A~ 70 (1074)
++...|++++|..+|+..-... ..+..++ .++++.+.+.+.+ ++++..+..+|..+...|++++|.
T Consensus 51 ~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai 130 (656)
T PRK15174 51 ACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVA 130 (656)
T ss_pred HHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHH
Confidence 5677899999999988774322 1222222 3566666665555 577888888999999999999999
Q ss_pred HHHHHhhC--------hhhhhhHhhccCCHHHHHHHHHh-----cCChHHHHHHHHHHHhcCChHHHHHHHHHh
Q psy14927 71 KYYEEARD--------YLSMVRVLCFLQDFSRAAELANA-----SGDTAAAYHLARQYENSGQFDEAIHFYSVA 131 (1074)
Q Consensus 71 ~~y~~a~d--------~~~~vr~l~~~~~~~~a~~i~~~-----~~~~~~~~~la~~~~~~g~~~~Ai~~y~~a 131 (1074)
..|.++=. +..+.+++...|++++|....+. +++......++ .+...|++++|++.|...
T Consensus 131 ~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~-~l~~~g~~~eA~~~~~~~ 203 (656)
T PRK15174 131 DLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCL-SFLNKSRLPEDHDLARAL 203 (656)
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHcCCHHHHHHHHHHH
Confidence 99988643 24466778889999988876652 23444443433 467788999898888763
No 161
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.12 E-value=0.00011 Score=84.31 Aligned_cols=101 Identities=20% Similarity=0.259 Sum_probs=55.3
Q ss_pred eEEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccCCcccCCccC------ccccCccc-CC-CCCeeeCCCCC----
Q psy14927 970 KVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLG------LEEIGIEK-DE-KGRVPVNSRFQ---- 1037 (1074)
Q Consensus 970 ~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~------l~~~gl~l-d~-~G~I~Vd~~~~---- 1037 (1074)
++..|...+.+..|.+.... ....+++++|.||.|+|..+....-. +...|+.. |. ...|.|+++.+
T Consensus 341 ~~~~i~~~~eg~~v~~r~rg-~~~~~~l~~~~VIn~~g~~~~~~~~s~~~L~sl~~~Gl~rpd~~~lGl~v~~~~~v~~~ 419 (474)
T COG4529 341 RVVSIDREGEGRAVTYRERG-KQHEEELDVDAVINTTGPAHDNSLSSDPFLRSLGENGLARPDPPGLGLDVSDDSEVLGE 419 (474)
T ss_pred ceeecccccCCceEEeeccc-cCccceeeeeEEEEcCCcCcCCCccchHHHHHHHhCCccccCCCCCceeeCCCCcccCC
Confidence 45566555444444444311 33457889999999999877554311 11223221 11 23456666555
Q ss_pred --CCCCCEEEecccCCCCC----cHHHHHHHHHHHHHHhh
Q psy14927 1038 --TVIPNIFAIGDCIHGPM----LAHKAEDEGIVCVEGIA 1071 (1074)
Q Consensus 1038 --ts~~~IyAiGD~~~~~~----~~~~A~~~G~~aA~~I~ 1071 (1074)
+..++.|++|-.+.+.. .+..-..++..+|..|+
T Consensus 420 ~g~~~~~~fa~Gplt~G~f~ei~~vP~v~~qa~~~A~~l~ 459 (474)
T COG4529 420 DGERVTGLFAAGPLTRGTFWEIDGVPDVRVQAARLAAQLA 459 (474)
T ss_pred CCccccCceeeccccCCchhhhccChHHHHHHHHHHHHHh
Confidence 35788999999887531 12233344444444443
No 162
>KOG1920|consensus
Probab=98.05 E-value=7.2e-05 Score=92.19 Aligned_cols=171 Identities=18% Similarity=0.227 Sum_probs=131.3
Q ss_pred ccCHHHHHHHH-----HHHHHHHHH--HHHHHhhhCccchhhHHHHHHHhhhhHHHHHHHHHHHHhhhcHHHHHHHHHHh
Q psy14927 578 KLNLETMMGTK-----SAAVKALTG--GIAHLFKSNKALKIITKQIILILIIYRVLLKWWAQYIESTEDMDLAMKYYEEA 650 (1074)
Q Consensus 578 ~~~w~~~~~~~-----~~~i~~l~~--~~~~~l~~~~i~~~~~~~~~~~~~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a 650 (1074)
+++...++..+ ..++--|+. ..+.++++-.|| +--++|..|..|..++
T Consensus 852 Dl~Lal~VAq~SqkDPkEyLP~L~el~~m~~~~rkF~ID-------------------------~~L~ry~~AL~hLs~~ 906 (1265)
T KOG1920|consen 852 DLDLALLVAQKSQKDPKEYLPFLNELKKMETLLRKFKID-------------------------DYLKRYEDALSHLSEC 906 (1265)
T ss_pred chHHHHHHHHHhccChHHHHHHHHHHhhchhhhhheeHH-------------------------HHHHHHHHHHHHHHHc
Confidence 56777666666 455555553 345566666777 3346999999999999
Q ss_pred h--CHHHHHHHHHHcCCHHHHHHHHHhcCC-cHHHH-HHHHHHHhcCCHHHHHHHHHHcCCHHHHHHH---hccHHHHHH
Q psy14927 651 R--DYLSMVRVLCFLQDFSRAAELANASGD-TAAAY-HLARQYENSGQFDEAIHFYSVAGSCGNAVRL---CGQLDAVES 723 (1074)
Q Consensus 651 g--~~~~ai~~~~~~~~~~~a~~v~~~~~~-~~~~~-~~A~~~~~~g~~~~A~~~~~kag~~~~Av~m---a~~w~~a~~ 723 (1074)
| -|+...+...+.+.+.+|..+.+-+.. ....+ ..|.||.+.+.++.|.-+|.++|+.++|+.. |++|+++..
T Consensus 907 ~~~~~~e~~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~GklekAl~a~~~~~dWr~~l~ 986 (1265)
T KOG1920|consen 907 GETYFPECKNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKLEKALKAYKECGDWREALS 986 (1265)
T ss_pred CccccHHHHHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccHHHHHHHHHHhccHHHHHH
Confidence 9 799999999999999999988864433 22222 4599999999999999999999999999977 999999999
Q ss_pred HHHHhCCcccHHHHHHHHHHH------------------HHcCCHHHHHHHHHHhCCHHHHHHHHHHcCC
Q psy14927 724 IASELNVQSDQDLILKCASYF------------------ARREHHDRAVQMYAIARRYDQALSLIQTKHV 775 (1074)
Q Consensus 724 ~A~~~~~~~~~~~~~~~a~~~------------------~~~~~~~~Ai~~y~~ag~~~~Ai~~~~~~~~ 775 (1074)
+|.+..+.. +.++.+|+.+ +--+++.+|+..|+++..|.+|+|.+.....
T Consensus 987 ~a~ql~~~~--de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd~~~av~ll~ka~~~~eAlrva~~~~~ 1054 (1265)
T KOG1920|consen 987 LAAQLSEGK--DELVILAEELVSRLVEQRKHYEAAKILLEYLSDPEEAVALLCKAKEWEEALRVASKAKR 1054 (1265)
T ss_pred HHHhhcCCH--HHHHHHHHHHHHHHHHcccchhHHHHHHHHhcCHHHHHHHHhhHhHHHHHHHHHHhccc
Confidence 999874432 2233333333 3446777999999999999999999988754
No 163
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=98.04 E-value=3.8e-06 Score=97.68 Aligned_cols=54 Identities=17% Similarity=0.201 Sum_probs=34.8
Q ss_pred hhhhhhHHHHhhhCCeEEEee-eEEEec--CCe-EEEEeCCCCeeEEEcCeEEEccCCCC
Q psy14927 842 KALTGGIAHLFKSNKVTQLNG-HGKITG--PNT-VTVIKSDGSTEEVKTKNILIATGSEV 897 (1074)
Q Consensus 842 ~~l~~~~~~~l~~~gV~~~~g-~v~~id--~~~-~~v~~~~G~~~~i~~d~lIIATG~~p 897 (1074)
.++...+...+++.||+++++ +|..+. .+. +.|.++++ .++.+|.||||||+..
T Consensus 109 ~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~~~--~~~~a~~vILAtGG~S 166 (409)
T PF03486_consen 109 SSVVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTKNG--GEYEADAVILATGGKS 166 (409)
T ss_dssp HHHHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEETTT--EEEEESEEEE----SS
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeeccCc--ccccCCEEEEecCCCC
Confidence 345555777788889999999 577763 344 77777555 6899999999999864
No 164
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.00 E-value=0.14 Score=66.29 Aligned_cols=87 Identities=20% Similarity=0.121 Sum_probs=58.0
Q ss_pred hcCCHHHHHHHHHHcCcccchhhhHhhhcHHHHHHHhhcCCChHHHHHHHHHHHhccCHHHHHHHHHHhhChhh----hh
Q psy14927 8 KNGDIDRAIRMFEKAETHQQHVPRMLLENTDKLEKYIIQSKDPVLLKWWAQYIESTEDMDLAMKYYEEARDYLS----MV 83 (1074)
Q Consensus 8 ~~g~~~eA~~~Ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~~~----~v 83 (1074)
..|++++|+..|+++-..+ ++++.++..+|+++...|++++|+.+.+++-..+. .-
T Consensus 56 ~~Gd~~~A~~~l~~Al~~d--------------------P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~ 115 (987)
T PRK09782 56 KNNDEATAIREFEYIHQQV--------------------PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLE 115 (987)
T ss_pred hCCCHHHHHHHHHHHHHhC--------------------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHH
Confidence 3478888888888777555 44577888888988899999999888887655432 11
Q ss_pred hHhhccCCHHHHHHHHH-----hcCChHHHHHHHHH
Q psy14927 84 RVLCFLQDFSRAAELAN-----ASGDTAAAYHLARQ 114 (1074)
Q Consensus 84 r~l~~~~~~~~a~~i~~-----~~~~~~~~~~la~~ 114 (1074)
..|..++++++|.++++ .+++.+...++|..
T Consensus 116 ~~La~i~~~~kA~~~ye~l~~~~P~n~~~~~~la~~ 151 (987)
T PRK09782 116 RSLAAIPVEVKSVTTVEELLAQQKACDAVPTLRCRS 151 (987)
T ss_pred HHHHHhccChhHHHHHHHHHHhCCCChhHHHHHHHH
Confidence 11344466666766655 24555666666665
No 165
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.00 E-value=0.0007 Score=84.58 Aligned_cols=276 Identities=13% Similarity=0.047 Sum_probs=149.0
Q ss_pred hhcCCHHHHHHHHHHcCcccchhhh-------Hhh--hcHHHHHHHhhc-----CCChHHHHHHHHHHHhccCHHHHHHH
Q psy14927 7 MKNGDIDRAIRMFEKAETHQQHVPR-------MLL--ENTDKLEKYIIQ-----SKDPVLLKWWAQYIESTEDMDLAMKY 72 (1074)
Q Consensus 7 ~~~g~~~eA~~~Ye~~~~~~~~~~~-------~~~--~~~~~~~~~~~~-----~~~~~l~~~~a~~~e~~~~~~~A~~~ 72 (1074)
...|++++|+..|+++-..+..-++ ++. +++..+...+.+ ++++..+...++.+...|++++|..+
T Consensus 87 l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~ 166 (656)
T PRK15174 87 LASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISL 166 (656)
T ss_pred hhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHH
Confidence 3579999999999998765433322 222 366655554444 67788999999999999999999999
Q ss_pred HHHhh----Chhh---hhhHhhccCCHHHHHHHHHh-----c-CChHHHHHHHHHHHhcCChHHHHHHHHHhCChHHHHH
Q psy14927 73 YEEAR----DYLS---MVRVLCFLQDFSRAAELANA-----S-GDTAAAYHLARQYENSGQFDEAIHFYSVAGSCGNAVR 139 (1074)
Q Consensus 73 y~~a~----d~~~---~vr~l~~~~~~~~a~~i~~~-----~-~~~~~~~~la~~~~~~g~~~~Ai~~y~~a~~~~~A~~ 139 (1074)
|.+.- +... ....+...|++++|....+. . .+......++..+.+.|++++|++.|.++-...
T Consensus 167 ~~~~~~~~P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~---- 242 (656)
T PRK15174 167 ARTQAQEVPPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG---- 242 (656)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC----
Confidence 97652 1111 11237788999999988774 1 222334456788889999999999887753221
Q ss_pred HHHHhCchHHHHHHh---hhcCc-hh-HHHHHHHHcc------CC---hhHHHHHHHHhCChHHHHHHHHhhcc--CCcc
Q psy14927 140 LCKEQALDDQLWNLA---LSAGP-SE-QIEAATYLET------IE---PDKAVLLYHKAGALHKALDLAFKLTL--SNSG 203 (1074)
Q Consensus 140 la~~~~~~~~~~~l~---~~~~~-~~-~~~~A~~~e~------~~---~~~A~~ly~kaG~~~kAl~l~~~~~~--~~~~ 203 (1074)
.+..+.+..++ ...+. ++ ...+-.+|++ .+ +..-+.+|.+.|++.+|+..+.+.-. +++.
T Consensus 243 ----p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~ 318 (656)
T PRK15174 243 ----LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLP 318 (656)
T ss_pred ----CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 00001111111 00000 00 0001111111 00 12224455555666666655544221 1111
Q ss_pred hHHHHHHHHHHhcCCChhhHHHhhhhcchHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHhHHH
Q psy14927 204 LVFQIKAMKCLLKSGDTNKIIFFAGVSRMKEIYVMAANYLQSSDWKSQPELLKSIISFYSKGKAPHLLANFYVSCAQVEI 283 (1074)
Q Consensus 204 ~~~~~~a~k~l~~~~~~~~~i~~a~~~r~~~l~~~aa~yl~~~~~~~~~~~~~~i~~~Y~k~~~~~~aa~~~~~~a~~ei 283 (1074)
. .+..-..++.+.|+.+.++..... +.. . ...++.........|...|.+++|...|.......=
T Consensus 319 ~-a~~~La~~l~~~G~~~eA~~~l~~---------al~----~-~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P 383 (656)
T PRK15174 319 Y-VRAMYARALRQVGQYTAASDEFVQ---------LAR----E-KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARA 383 (656)
T ss_pred H-HHHHHHHHHHHCCCHHHHHHHHHH---------HHH----h-CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCh
Confidence 0 111123444556666554443211 110 0 011222223345567788888888888777644310
Q ss_pred -HhhcCHHHHHHHHHHHHHHHHh
Q psy14927 284 -DEFGNYEKGLGALNEAKRCLLK 305 (1074)
Q Consensus 284 -~e~~~y~~a~~~l~~a~~~l~~ 305 (1074)
.-..+|..|..+|.+++..+..
T Consensus 384 ~~~~~~~~ea~~~~~~~~~~~~~ 406 (656)
T PRK15174 384 SHLPQSFEEGLLALDGQISAVNL 406 (656)
T ss_pred hhchhhHHHHHHHHHHHHHhcCC
Confidence 2345666777777777765533
No 166
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=97.99 E-value=3.3e-05 Score=68.34 Aligned_cols=65 Identities=35% Similarity=0.508 Sum_probs=59.9
Q ss_pred hhHHhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEEee
Q psy14927 922 GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIEN 987 (1074)
Q Consensus 922 A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~ 987 (1074)
|..|.++|++||++++++.++ +.++++....+.+.|++.||++++++.+++++++++++.|+++|
T Consensus 15 A~~l~~~g~~vtli~~~~~~~-~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~~~V~~~~ 79 (80)
T PF00070_consen 15 AEALAELGKEVTLIERSDRLL-PGFDPDAAKILEEYLRKRGVEVHTNTKVKEIEKDGDGVEVTLED 79 (80)
T ss_dssp HHHHHHTTSEEEEEESSSSSS-TTSSHHHHHHHHHHHHHTTEEEEESEEEEEEEEETTSEEEEEET
T ss_pred HHHHHHhCcEEEEEeccchhh-hhcCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCEEEEEEec
Confidence 778889999999999999999 89999999999999999999999999999999988776677765
No 167
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=97.95 E-value=0.0012 Score=84.33 Aligned_cols=126 Identities=10% Similarity=-0.010 Sum_probs=98.8
Q ss_pred hcCCHHHHHHHHHHcCcccchhh-------hHhh--hcHHHHHHHhhc-----CCChHHHHHHHHHHHhccCHHHHHHHH
Q psy14927 8 KNGDIDRAIRMFEKAETHQQHVP-------RMLL--ENTDKLEKYIIQ-----SKDPVLLKWWAQYIESTEDMDLAMKYY 73 (1074)
Q Consensus 8 ~~g~~~eA~~~Ye~~~~~~~~~~-------~~~~--~~~~~~~~~~~~-----~~~~~l~~~~a~~~e~~~~~~~A~~~y 73 (1074)
-.|++++|+++|+++...+..-+ ..+. +++.++.++..+ +.++..+..++..+...|++++|..++
T Consensus 27 ~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l 106 (765)
T PRK10049 27 WAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKA 106 (765)
T ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 46999999999999885331222 2222 477777776666 677889999999999999999999999
Q ss_pred HHhhC-------hhhhhhHhhccCCHHHHHHHHH-----hcCChHHHHHHHHHHHhcCChHHHHHHHHHhCC
Q psy14927 74 EEARD-------YLSMVRVLCFLQDFSRAAELAN-----ASGDTAAAYHLARQYENSGQFDEAIHFYSVAGS 133 (1074)
Q Consensus 74 ~~a~d-------~~~~vr~l~~~~~~~~a~~i~~-----~~~~~~~~~~la~~~~~~g~~~~Ai~~y~~a~~ 133 (1074)
.++-. +..+..+|...|++++|....+ .+++..+...+|..+...|..+.|++.+.++-.
T Consensus 107 ~~~l~~~P~~~~~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~ 178 (765)
T PRK10049 107 KQLVSGAPDKANLLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANL 178 (765)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC
Confidence 98522 5566777889999999988775 466777888899999999999999999886665
No 168
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.95 E-value=4.7e-05 Score=89.19 Aligned_cols=108 Identities=19% Similarity=0.262 Sum_probs=89.2
Q ss_pred hcHHHHHHHhhcCCChHHHHHHHHHHHhccCHHHHHHHHHHhhChhhhhhHhhccCCHHHHHHHHHh---cCChHHHHHH
Q psy14927 35 ENTDKLEKYIIQSKDPVLLKWWAQYIESTEDMDLAMKYYEEARDYLSMVRVLCFLQDFSRAAELANA---SGDTAAAYHL 111 (1074)
Q Consensus 35 ~~~~~~~~~~~~~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~~~~vr~l~~~~~~~~a~~i~~~---~~~~~~~~~l 111 (1074)
++.+.+.+...+.+++..|+++|+.+..+|+++.|++||.+++|+.++.-+|.-.|+.++..+++.. .++...+++.
T Consensus 332 g~L~~A~~~a~~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~~~L~lLy~~~g~~~~L~kl~~~a~~~~~~n~af~~ 411 (443)
T PF04053_consen 332 GNLDIALEIAKELDDPEKWKQLGDEALRQGNIELAEECYQKAKDFSGLLLLYSSTGDREKLSKLAKIAEERGDINIAFQA 411 (443)
T ss_dssp T-HHHHHHHCCCCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-HHHHHHHHHHCT-HHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CCHHHHHHHHHhcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCccccHHHHHHhCCHHHHHHHHHHHHHccCHHHHHHH
Confidence 5788999999999999999999999999999999999999999999999999999999988888763 4454444444
Q ss_pred HHHHHhcCChHHHHHHHHHhCChHHHHHHHHHhC
Q psy14927 112 ARQYENSGQFDEAIHFYSVAGSCGNAVRLCKEQA 145 (1074)
Q Consensus 112 a~~~~~~g~~~~Ai~~y~~a~~~~~A~~la~~~~ 145 (1074)
+- -.||+++.++.+..+|++.+|.=+|+.|+
T Consensus 412 ~~---~lgd~~~cv~lL~~~~~~~~A~~~A~ty~ 442 (443)
T PF04053_consen 412 AL---LLGDVEECVDLLIETGRLPEAALFARTYG 442 (443)
T ss_dssp HH---HHT-HHHHHHHHHHTT-HHHHHHHHHHTT
T ss_pred HH---HcCCHHHHHHHHHHcCCchHHHHHHHhcC
Confidence 33 35999999999999999999999999885
No 169
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=97.94 E-value=0.00095 Score=84.51 Aligned_cols=80 Identities=19% Similarity=0.209 Sum_probs=46.1
Q ss_pred hHHHHHHHHHHHhccCHHHHHHHHHHhh---------ChhhhhhHhhccCCHHHHHHHHHh---c---CChHHHHHHHHH
Q psy14927 50 PVLLKWWAQYIESTEDMDLAMKYYEEAR---------DYLSMVRVLCFLQDFSRAAELANA---S---GDTAAAYHLARQ 114 (1074)
Q Consensus 50 ~~l~~~~a~~~e~~~~~~~A~~~y~~a~---------d~~~~vr~l~~~~~~~~a~~i~~~---~---~~~~~~~~la~~ 114 (1074)
...|......+-..|++++|.+.|.... -|.++++.++.+|++++|.++... . .+......|...
T Consensus 290 ~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~ 369 (697)
T PLN03081 290 TVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDL 369 (697)
T ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHH
Confidence 3455555666666677777777765532 234555666667777666666542 1 233445566666
Q ss_pred HHhcCChHHHHHHHH
Q psy14927 115 YENSGQFDEAIHFYS 129 (1074)
Q Consensus 115 ~~~~g~~~~Ai~~y~ 129 (1074)
|.+.|++++|.+.|.
T Consensus 370 y~k~G~~~~A~~vf~ 384 (697)
T PLN03081 370 YSKWGRMEDARNVFD 384 (697)
T ss_pred HHHCCCHHHHHHHHH
Confidence 666666666655543
No 170
>KOG0985|consensus
Probab=97.93 E-value=0.017 Score=70.40 Aligned_cols=318 Identities=15% Similarity=0.143 Sum_probs=202.8
Q ss_pred hhhcCCHHHHHHHHHHcCcccchh-------hhHhh-----hcHHHHHHHhhcC---CChHHHHHHHHHHHhccCHHHHH
Q psy14927 6 TMKNGDIDRAIRMFEKAETHQQHV-------PRMLL-----ENTDKLEKYIIQS---KDPVLLKWWAQYIESTEDMDLAM 70 (1074)
Q Consensus 6 ~~~~g~~~eA~~~Ye~~~~~~~~~-------~~~~~-----~~~~~~~~~~~~~---~~~~l~~~~a~~~e~~~~~~~A~ 70 (1074)
+|..+-..|=|++.||.= .+..+ -.+++ .+..++-+||.+- +.|. .|..+-+.+-|++|-
T Consensus 994 fMtadLp~eLIELLEKIv-L~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~----ia~iai~~~LyEEAF 1068 (1666)
T KOG0985|consen 994 FMTADLPNELIELLEKIV-LDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPD----IAEIAIENQLYEEAF 1068 (1666)
T ss_pred HHhcCCcHHHHHHHHHHh-cCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchh----HHHHHhhhhHHHHHH
Confidence 455666677788888753 11111 11221 2677888888873 2333 377888999999999
Q ss_pred HHHHHhhChhhhhhH-hhccCCHHHHHHHHHhcCChHHHHHHHHHHHhcCChHHHHHHHHHhCC---hHHHHHHHHHhCc
Q psy14927 71 KYYEEARDYLSMVRV-LCFLQDFSRAAELANASGDTAAAYHLARQYENSGQFDEAIHFYSVAGS---CGNAVRLCKEQAL 146 (1074)
Q Consensus 71 ~~y~~a~d~~~~vr~-l~~~~~~~~a~~i~~~~~~~~~~~~la~~~~~~g~~~~Ai~~y~~a~~---~~~A~~la~~~~~ 146 (1074)
..|.+-.-..+++.+ +.+.++.++|.+.+...+.++...++|+--.+.|.+++||+-|+++.. |.+-++.|.+.|.
T Consensus 1069 ~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyikadDps~y~eVi~~a~~~~~ 1148 (1666)
T KOG0985|consen 1069 AIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKADDPSNYLEVIDVASRTGK 1148 (1666)
T ss_pred HHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhcCCcHHHHHHHHHHHhcCc
Confidence 999999999999999 788999999999999999999999999999999999999999999975 8899999999999
Q ss_pred hHHHHHHhhhcCc---hhHHH------HH---------HHHcc-C--ChhHHHHHHHHhCChHHHHHHHHhhccCCcchH
Q psy14927 147 DDQLWNLALSAGP---SEQIE------AA---------TYLET-I--EPDKAVLLYHKAGALHKALDLAFKLTLSNSGLV 205 (1074)
Q Consensus 147 ~~~~~~l~~~~~~---~~~~~------~A---------~~~e~-~--~~~~A~~ly~kaG~~~kAl~l~~~~~~~~~~~~ 205 (1074)
|++++...+.+.. +-+.. +| +++.. + +..+-+.-...-|.|+ |.+++... +.
T Consensus 1149 ~edLv~yL~MaRkk~~E~~id~eLi~AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~-aAkl~y~~------vS 1221 (1666)
T KOG0985|consen 1149 YEDLVKYLLMARKKVREPYIDSELIFAYAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYE-AAKLLYSN------VS 1221 (1666)
T ss_pred HHHHHHHHHHHHHhhcCccchHHHHHHHHHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhH-HHHHHHHH------hh
Confidence 9999887544221 11111 11 01111 0 0111111111112221 12222221 11
Q ss_pred HHHHHHHHHhcCCChhhHHHhhhhcchHHHHHHHH-------HH--Hh--cCCCCCChhHHHHHHHHHHccCCHHHHHHH
Q psy14927 206 FQIKAMKCLLKSGDTNKIIFFAGVSRMKEIYVMAA-------NY--LQ--SSDWKSQPELLKSIISFYSKGKAPHLLANF 274 (1074)
Q Consensus 206 ~~~~a~k~l~~~~~~~~~i~~a~~~r~~~l~~~aa-------~y--l~--~~~~~~~~~~~~~i~~~Y~k~~~~~~aa~~ 274 (1074)
.|.+-.--|...|+..-+++-|..+.....|.... +| .| +++.-........++.+|...|-|+++...
T Consensus 1222 N~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl 1301 (1666)
T KOG0985|consen 1222 NFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISL 1301 (1666)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHH
Confidence 13233334555777777888887777777676422 11 11 233333456778889999999999999888
Q ss_pred HHHHHhHHHHhhcCHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhhcCChHHHhhHHHHHHHHHhhccCcc
Q psy14927 275 YVSCAQVEIDEFGNYEKGLGALNEAKRCLLKHNDSMYETLKSSVVEKLAEVEIDEFGNYEKGLGALNEAKRCLLKHNDSM 354 (1074)
Q Consensus 275 ~~~~a~~ei~e~~~y~~a~~~l~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 354 (1074)
.+.---.| .||=-++--+-.|= ..-.|++|...|.+--+++-|- =.+|++..+.-|..-+
T Consensus 1302 ~Ea~LGLE--------RAHMgmfTELaiLY--skykp~km~EHl~LFwsRvNip----------KviRA~eqahlW~Elv 1361 (1666)
T KOG0985|consen 1302 LEAGLGLE--------RAHMGMFTELAILY--SKYKPEKMMEHLKLFWSRVNIP----------KVIRAAEQAHLWSELV 1361 (1666)
T ss_pred HHhhhchh--------HHHHHHHHHHHHHH--HhcCHHHHHHHHHHHHHhcchH----------HHHHHHHHHHHHHHHH
Confidence 77666666 44444333222222 1245677777666654444444 1247888877776554
Q ss_pred h
Q psy14927 355 Y 355 (1074)
Q Consensus 355 ~ 355 (1074)
-
T Consensus 1362 f 1362 (1666)
T KOG0985|consen 1362 F 1362 (1666)
T ss_pred H
Confidence 3
No 171
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=97.91 E-value=0.0078 Score=70.33 Aligned_cols=77 Identities=18% Similarity=0.197 Sum_probs=57.9
Q ss_pred HHHHHhccCHHHHHHHHHHhhCh--------hhhhhHhhccCCHHHHHHHHHh---cCC------hHHHHHHHHHHHhcC
Q psy14927 57 AQYIESTEDMDLAMKYYEEARDY--------LSMVRVLCFLQDFSRAAELANA---SGD------TAAAYHLARQYENSG 119 (1074)
Q Consensus 57 a~~~e~~~~~~~A~~~y~~a~d~--------~~~vr~l~~~~~~~~a~~i~~~---~~~------~~~~~~la~~~~~~g 119 (1074)
|..+...|++++|+..|.++-.. ..+..++...|++++|.++.+. ..+ ......+|..|...|
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 66667889999999999997533 3345568889999999888763 111 134568899999999
Q ss_pred ChHHHHHHHHHhCC
Q psy14927 120 QFDEAIHFYSVAGS 133 (1074)
Q Consensus 120 ~~~~Ai~~y~~a~~ 133 (1074)
++++|+++|.++-.
T Consensus 122 ~~~~A~~~~~~~l~ 135 (389)
T PRK11788 122 LLDRAEELFLQLVD 135 (389)
T ss_pred CHHHHHHHHHHHHc
Confidence 99999998887643
No 172
>KOG2002|consensus
Probab=97.89 E-value=0.013 Score=71.79 Aligned_cols=204 Identities=19% Similarity=0.169 Sum_probs=118.5
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHhCChHHHH-HHHHHhCchHHHHHHhhhcCchhHHHHHHHHccCChhHHHHHHHH
Q psy14927 105 TAAAYHLARQYENSGQFDEAIHFYSVAGSCGNAV-RLCKEQALDDQLWNLALSAGPSEQIEAATYLETIEPDKAVLLYHK 183 (1074)
Q Consensus 105 ~~~~~~la~~~~~~g~~~~Ai~~y~~a~~~~~A~-~la~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~~~~~~A~~ly~k 183 (1074)
..++|.+||.|=.+||+++|-.||..|-+.+... -| .+.--++.|++
T Consensus 307 aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l--------------------------------~~~GlgQm~i~ 354 (1018)
T KOG2002|consen 307 AESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVL--------------------------------PLVGLGQMYIK 354 (1018)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccc--------------------------------cccchhHHHHH
Confidence 4578999999999999999999998877665332 10 01123556666
Q ss_pred hCChHHHHHHHHhhccCCcchHHHHHHHHHH----hcCC----ChhhHHHhhhh-----cchHHHHHHHHHHHhcCCCCC
Q psy14927 184 AGALHKALDLAFKLTLSNSGLVFQIKAMKCL----LKSG----DTNKIIFFAGV-----SRMKEIYVMAANYLQSSDWKS 250 (1074)
Q Consensus 184 aG~~~kAl~l~~~~~~~~~~~~~~~~a~k~l----~~~~----~~~~~i~~a~~-----~r~~~l~~~aa~yl~~~~~~~ 250 (1074)
-|.+..|.-.+.+.-....+. ...|+.| +..+ ..+++..+.+. .++.+.|+..+..++..|...
T Consensus 355 ~~dle~s~~~fEkv~k~~p~~---~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~ 431 (1018)
T KOG2002|consen 355 RGDLEESKFCFEKVLKQLPNN---YETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWA 431 (1018)
T ss_pred hchHHHHHHHHHHHHHhCcch---HHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHH
Confidence 666666665555421111111 1223333 1111 12444444443 345568888998888876555
Q ss_pred ChhHHHHHHHHHHccCCHHHHHHHHHHHHhHHHHhhcCHHHHHHHHHHHHHHHH-hcCCCchHHHHHHHHHHHHHHHHhh
Q psy14927 251 QPELLKSIISFYSKGKAPHLLANFYVSCAQVEIDEFGNYEKGLGALNEAKRCLL-KHNDSMYETLKSSVVEKLAEVEIDE 329 (1074)
Q Consensus 251 ~~~~~~~i~~~Y~k~~~~~~aa~~~~~~a~~ei~e~~~y~~a~~~l~~a~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (1074)
.-..+.++..+++..+..-. .--...+|-.. -..|++.+|++.+.+|...+. ..+........-++.+-+..++=.
T Consensus 432 sL~~~~~A~d~L~~~~~~ip-~E~LNNvaslh-f~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~- 508 (1018)
T KOG2002|consen 432 SLDAYGNALDILESKGKQIP-PEVLNNVASLH-FRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEE- 508 (1018)
T ss_pred HHHHHHHHHHHHHHcCCCCC-HHHHHhHHHHH-HHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHh-
Confidence 56667777766655554421 12234456666 678999999999999998855 333333212222222223333333
Q ss_pred cCChHHHhhHHHHHHHH
Q psy14927 330 FGNYEKGLGALNEAKRC 346 (1074)
Q Consensus 330 ~~~~~~a~~~~~~~~~~ 346 (1074)
+++.+.|..||..+-..
T Consensus 509 l~~~~~A~e~Yk~Ilke 525 (1018)
T KOG2002|consen 509 LHDTEVAEEMYKSILKE 525 (1018)
T ss_pred hhhhhHHHHHHHHHHHH
Confidence 47888888888876544
No 173
>PLN03077 Protein ECB2; Provisional
Probab=97.88 E-value=0.0084 Score=77.87 Aligned_cols=158 Identities=10% Similarity=0.075 Sum_probs=87.6
Q ss_pred HHHHHHHhCChHHHHHHHHhhccCCcchHHHHHHHHHHhcCCChhhHHHhhhhcch-----HHHHHH-------------
Q psy14927 177 AVLLYHKAGALHKALDLAFKLTLSNSGLVFQIKAMKCLLKSGDTNKIIFFAGVSRM-----KEIYVM------------- 238 (1074)
Q Consensus 177 A~~ly~kaG~~~kAl~l~~~~~~~~~~~~~~~~a~k~l~~~~~~~~~i~~a~~~r~-----~~l~~~------------- 238 (1074)
=+..|.|+|++.+|.+++-+....| ..-|-.=+..+.+.|+.+.++.+-...+. ...|..
T Consensus 430 Li~~y~k~g~~~~A~~vf~~m~~~d--~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~ 507 (857)
T PLN03077 430 LIEMYSKCKCIDKALEVFHNIPEKD--VISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMC 507 (857)
T ss_pred HHHHHHHcCCHHHHHHHHHhCCCCC--eeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHH
Confidence 4578999999999999988765322 11232333444555555554444333221 000110
Q ss_pred ---HHHHHhcCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHH----------HhHHHHhhcCHHHHHHHHHHHHHHHHh
Q psy14927 239 ---AANYLQSSDWKSQPELLKSIISFYSKGKAPHLLANFYVSC----------AQVEIDEFGNYEKGLGALNEAKRCLLK 305 (1074)
Q Consensus 239 ---aa~yl~~~~~~~~~~~~~~i~~~Y~k~~~~~~aa~~~~~~----------a~~ei~e~~~y~~a~~~l~~a~~~l~~ 305 (1074)
.-.+.....+..+.-.+..++..|.|.|..++|-..+..+ ..-- -..|++++|..++.++.+
T Consensus 508 ~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~-~~~G~~~~A~~lf~~M~~---- 582 (857)
T PLN03077 508 GKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGY-VAHGKGSMAVELFNRMVE---- 582 (857)
T ss_pred hHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHH-HHcCCHHHHHHHHHHHHH----
Confidence 1112222334555566778899999999999997765544 2222 356888888888766543
Q ss_pred cCCCchHHHHHHHHHHHHHHHHhhcCChHHHhhHHHHHHHH
Q psy14927 306 HNDSMYETLKSSVVEKLAEVEIDEFGNYEKGLGALNEAKRC 346 (1074)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 346 (1074)
.+.. |+..- ...+ ...+.+ .|+.+.|.+++.+....
T Consensus 583 ~g~~-Pd~~T--~~~l-l~a~~~-~g~v~ea~~~f~~M~~~ 618 (857)
T PLN03077 583 SGVN-PDEVT--FISL-LCACSR-SGMVTQGLEYFHSMEEK 618 (857)
T ss_pred cCCC-CCccc--HHHH-HHHHhh-cChHHHHHHHHHHHHHH
Confidence 3432 21110 1111 122344 47788888777776633
No 174
>PRK08275 putative oxidoreductase; Provisional
Probab=97.87 E-value=0.00013 Score=89.35 Aligned_cols=44 Identities=27% Similarity=0.265 Sum_probs=35.3
Q ss_pred CCeeeCCCCCCCCCCEEEecccCC-CCCcHHHHHHHHHHHHHHhh
Q psy14927 1028 GRVPVNSRFQTVIPNIFAIGDCIH-GPMLAHKAEDEGIVCVEGIA 1071 (1074)
Q Consensus 1028 G~I~Vd~~~~ts~~~IyAiGD~~~-~~~~~~~A~~~G~~aA~~I~ 1071 (1074)
|.|.||..++|++||+||+|||+. +......|.-.|+.|+.+++
T Consensus 357 Ggi~~d~~~~t~i~gl~a~Ge~~~~~~~~~~~~~~~G~~a~~~~~ 401 (554)
T PRK08275 357 SGVWVNEKAETTVPGLYAAGDMASVPHNYMLGAFTYGWFAGENAA 401 (554)
T ss_pred CcEEECCCCccCCCCEEECcccCCchhHHHHHHHHHHHHHHHHHH
Confidence 569999999999999999999875 33345567788888887764
No 175
>PRK08401 L-aspartate oxidase; Provisional
Probab=97.85 E-value=4.1e-05 Score=91.66 Aligned_cols=46 Identities=24% Similarity=0.392 Sum_probs=35.3
Q ss_pred CCCeeeCCCCCCCCCCEEEecccCC-C--------CCcHHHHHHHHHHHHHHhhC
Q psy14927 1027 KGRVPVNSRFQTVIPNIFAIGDCIH-G--------PMLAHKAEDEGIVCVEGIAG 1072 (1074)
Q Consensus 1027 ~G~I~Vd~~~~ts~~~IyAiGD~~~-~--------~~~~~~A~~~G~~aA~~I~~ 1072 (1074)
-|.|.||...+|++||+||+|+|+. + ......++-.|++|+.+++.
T Consensus 310 ~GGi~vd~~~~t~IpGLyAaGE~a~~G~hG~nrl~gnsl~~~~v~G~~ag~~aa~ 364 (466)
T PRK08401 310 IGGISVDTFYRTGIKNLYAIGEAASNGFHGANRLASNSLLECIVSGLEVARTISR 364 (466)
T ss_pred CCCEEECCCCcccCCCEEECccccccCCCCCCcchhHHHHHHHHHHHHHHHHHhh
Confidence 4778999999999999999999973 2 11244567778888888753
No 176
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=97.79 E-value=8.5e-05 Score=84.96 Aligned_cols=45 Identities=31% Similarity=0.419 Sum_probs=34.8
Q ss_pred CCeeeCCCCCCCCCCEEEecccCCC-----CCc----HHHHHHHHHHHHHHhhC
Q psy14927 1028 GRVPVNSRFQTVIPNIFAIGDCIHG-----PML----AHKAEDEGIVCVEGIAG 1072 (1074)
Q Consensus 1028 G~I~Vd~~~~ts~~~IyAiGD~~~~-----~~~----~~~A~~~G~~aA~~I~~ 1072 (1074)
|.|.||.+.+|++||+||||.|+.. ..+ .-.++--|..+|.+|.+
T Consensus 342 GGI~vD~~GrTsi~gLYAiGEvA~TGlHGANRLASNSLLE~vV~g~~aA~~i~~ 395 (518)
T COG0029 342 GGIAVDANGRTSIPGLYAIGEVACTGLHGANRLASNSLLECLVFGKRAAEDIAG 395 (518)
T ss_pred ccEEECCCCcccCcccEEeeeecccccccchhhhhhhHHHHHHHHHHHHHHhhc
Confidence 7799999999999999999999863 112 33456667777777775
No 177
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.78 E-value=0.00055 Score=76.34 Aligned_cols=110 Identities=21% Similarity=0.288 Sum_probs=63.5
Q ss_pred hHHHHHHHHHHccCCHHHHHHHHHHHHhHHHHhhcCHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhhcCC
Q psy14927 253 ELLKSIISFYSKGKAPHLLANFYVSCAQVEIDEFGNYEKGLGALNEAKRCLLKHNDSMYETLKSSVVEKLAEVEIDEFGN 332 (1074)
Q Consensus 253 ~~~~~i~~~Y~k~~~~~~aa~~~~~~a~~ei~e~~~y~~a~~~l~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (1074)
..++++..+|..-+....+..++..+|... -..|+|++|...+.+..+...+.+.... ... ...+..+-.++. .||
T Consensus 136 ~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~-~~l~~y~~A~~~~e~~~~~~l~~~l~~~-~~~-~~~l~a~l~~L~-~~D 211 (282)
T PF14938_consen 136 EYYQKAAELYEQEGSPHSAAECLLKAADLY-ARLGRYEEAIEIYEEVAKKCLENNLLKY-SAK-EYFLKAILCHLA-MGD 211 (282)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHH-HHTT-HHHHHHHHHHHHHTCCCHCTTGH-HHH-HHHHHHHHHHHH-TT-
T ss_pred HHHHHHHHHHHHCCChhhHHHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHhhcccccch-hHH-HHHHHHHHHHHH-cCC
Confidence 444556666777777777778888888887 7778888888888776665444333222 111 111222234445 699
Q ss_pred hHHHhhHHHHHHHHHhhccCc-chhHHHHHHHHHHH
Q psy14927 333 YEKGLGALNEAKRCLLKHNDS-MYETLKSSVVEKIA 367 (1074)
Q Consensus 333 ~~~a~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~ 367 (1074)
+..|-+.|.+....-..|.+. -...+ ..+++.++
T Consensus 212 ~v~A~~~~~~~~~~~~~F~~s~E~~~~-~~l~~A~~ 246 (282)
T PF14938_consen 212 YVAARKALERYCSQDPSFASSREYKFL-EDLLEAYE 246 (282)
T ss_dssp HHHHHHHHHHHGTTSTTSTTSHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCCCCCcHHHHHH-HHHHHHHH
Confidence 988888777766655555542 22233 33666664
No 178
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=97.78 E-value=0.00017 Score=88.98 Aligned_cols=38 Identities=18% Similarity=0.275 Sum_probs=32.1
Q ss_pred CCCCCCCCCEEEecccCC--CCCcHHHHHHHHHHHHHHhh
Q psy14927 1034 SRFQTVIPNIFAIGDCIH--GPMLAHKAEDEGIVCVEGIA 1071 (1074)
Q Consensus 1034 ~~~~ts~~~IyAiGD~~~--~~~~~~~A~~~G~~aA~~I~ 1071 (1074)
.+++|++||+||+|||+. ...++..+..+|.+++.+++
T Consensus 389 ~~~~T~v~glyA~Ge~~~~~~~~l~~~s~~~g~~ag~~~~ 428 (608)
T PRK06854 389 YNRMTTVEGLFAAGDVVGGSPHKFSSGSFAEGRIAAKAAV 428 (608)
T ss_pred cccccCCCCEEEeeecCCCCcchhHHHHHHHHHHHHHHHH
Confidence 889999999999999975 34567788889999988875
No 179
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.77 E-value=0.00029 Score=86.08 Aligned_cols=45 Identities=24% Similarity=0.367 Sum_probs=35.7
Q ss_pred CCCeeeCCCCCCCCCCEEEecccCCCC--------CcHHHHHHHHHHHHHHhh
Q psy14927 1027 KGRVPVNSRFQTVIPNIFAIGDCIHGP--------MLAHKAEDEGIVCVEGIA 1071 (1074)
Q Consensus 1027 ~G~I~Vd~~~~ts~~~IyAiGD~~~~~--------~~~~~A~~~G~~aA~~I~ 1071 (1074)
.|.|.||...+|++||+||+|+++++. .....|+-.|++|+.+++
T Consensus 348 ~GGi~vd~~~~t~IpGLyAaGE~~gg~hG~~rlgG~sl~~a~v~Gr~Ag~~aa 400 (543)
T PRK06263 348 MGGIRINEDCETNIPGLFACGEVAGGVHGANRLGGNALADTQVFGAIAGKSAA 400 (543)
T ss_pred cCCEEECCCCcccCCCeEeccccccCCCCCCccchhhhhhhHHHHHHHHHHHH
Confidence 367999999999999999999987531 124467888888888875
No 180
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=97.76 E-value=0.00015 Score=87.18 Aligned_cols=49 Identities=16% Similarity=0.316 Sum_probs=35.6
Q ss_pred hHHHHhhhC-CeEEEeeeEEEec----CCeEEEEeCCCCeeEEEcCeEEEccCCCC
Q psy14927 847 GIAHLFKSN-KVTQLNGHGKITG----PNTVTVIKSDGSTEEVKTKNILIATGSEV 897 (1074)
Q Consensus 847 ~~~~~l~~~-gV~~~~g~v~~id----~~~~~v~~~~G~~~~i~~d~lIIATG~~p 897 (1074)
.+.+.+.+. |++++.+.|+.+. .....|.+.+| ..+.++.||+|||...
T Consensus 101 ~L~e~Le~~pgV~Ile~~Vv~li~e~~g~V~GV~t~~G--~~I~Ad~VILATGtfL 154 (617)
T TIGR00136 101 AMRNALENQPNLSLFQGEVEDLILEDNDEIKGVVTQDG--LKFRAKAVIITTGTFL 154 (617)
T ss_pred HHHHHHHcCCCcEEEEeEEEEEEEecCCcEEEEEECCC--CEEECCEEEEccCccc
Confidence 344555555 8999999877652 23345677777 5899999999999974
No 181
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=97.74 E-value=4e-05 Score=85.50 Aligned_cols=210 Identities=20% Similarity=0.197 Sum_probs=50.7
Q ss_pred CCChHHHHHHHHHHHhccCHHHHHHHHHH--------hhChhhhhhHhhccCCHHHHHHHHHhc----CChHHHHHHHHH
Q psy14927 47 SKDPVLLKWWAQYIESTEDMDLAMKYYEE--------ARDYLSMVRVLCFLQDFSRAAELANAS----GDTAAAYHLARQ 114 (1074)
Q Consensus 47 ~~~~~l~~~~a~~~e~~~~~~~A~~~y~~--------a~d~~~~vr~l~~~~~~~~a~~i~~~~----~~~~~~~~la~~ 114 (1074)
.+++..|..+|+.+++.++++.|.++|.+ ..|+..++.+ ...+++++|.+++... ++...
T Consensus 41 ~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~~~------- 112 (280)
T PF13429_consen 41 PDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDPEEALKLAEKAYERDGDPRY------- 112 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccch-------
Confidence 46788999999999999999999999987 4455566666 6788888888876532 22222
Q ss_pred HHhcCChHHHHHHHHHhCChHHHHHHHHHhCchHHHHHHh-hhcCchhHHHHHHHHccCChhHHHHHHHHhCChHHHHHH
Q psy14927 115 YENSGQFDEAIHFYSVAGSCGNAVRLCKEQALDDQLWNLA-LSAGPSEQIEAATYLETIEPDKAVLLYHKAGALHKALDL 193 (1074)
Q Consensus 115 ~~~~g~~~~Ai~~y~~a~~~~~A~~la~~~~~~~~~~~l~-~~~~~~~~~~~A~~~e~~~~~~A~~ly~kaG~~~kAl~l 193 (1074)
+..+++.|...+.|+++.++-++. .... ....+..+...|.++ .+.|++.+|+++
T Consensus 113 ------l~~~l~~~~~~~~~~~~~~~l~~~------~~~~~~~~~~~~~~~~a~~~------------~~~G~~~~A~~~ 168 (280)
T PF13429_consen 113 ------LLSALQLYYRLGDYDEAEELLEKL------EELPAAPDSARFWLALAEIY------------EQLGDPDKALRD 168 (280)
T ss_dssp -----------H-HHHTT-HHHHHHHHHHH------HH-T---T-HHHHHHHHHHH------------HHCCHHHHHHHH
T ss_pred ------hhHHHHHHHHHhHHHHHHHHHHHH------HhccCCCCCHHHHHHHHHHH------------HHcCCHHHHHHH
Confidence 244555555556665555443332 0000 011123333444444 444444444444
Q ss_pred HHhhc--cCCcchHHHHHHHHHHhcCCChhhHHHhhhhcchHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHccCCHHHH
Q psy14927 194 AFKLT--LSNSGLVFQIKAMKCLLKSGDTNKIIFFAGVSRMKEIYVMAANYLQSSDWKSQPELLKSIISFYSKGKAPHLL 271 (1074)
Q Consensus 194 ~~~~~--~~~~~~~~~~~a~k~l~~~~~~~~~i~~a~~~r~~~l~~~aa~yl~~~~~~~~~~~~~~i~~~Y~k~~~~~~a 271 (1074)
+.+.- .+++. -.+..-+-.|+..|+.+++.. ....|.... ..+|.....+...|...|++++|
T Consensus 169 ~~~al~~~P~~~-~~~~~l~~~li~~~~~~~~~~------------~l~~~~~~~--~~~~~~~~~la~~~~~lg~~~~A 233 (280)
T PF13429_consen 169 YRKALELDPDDP-DARNALAWLLIDMGDYDEARE------------ALKRLLKAA--PDDPDLWDALAAAYLQLGRYEEA 233 (280)
T ss_dssp HHHHHHH-TT-H-HHHHHHHHHHCTTCHHHHHHH------------HHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHH
T ss_pred HHHHHHcCCCCH-HHHHHHHHHHHHCCChHHHHH------------HHHHHHHHC--cCHHHHHHHHHHHhccccccccc
Confidence 43310 00000 000011122334444433222 222222222 45666777778888888888887
Q ss_pred HHHHHHH--------------HhHHHHhhcCHHHHHHHHHHHHHHHH
Q psy14927 272 ANFYVSC--------------AQVEIDEFGNYEKGLGALNEAKRCLL 304 (1074)
Q Consensus 272 a~~~~~~--------------a~~ei~e~~~y~~a~~~l~~a~~~l~ 304 (1074)
-..+... |..= ...|++++|..+++.+.+.|.
T Consensus 234 l~~~~~~~~~~p~d~~~~~~~a~~l-~~~g~~~~A~~~~~~~~~~l~ 279 (280)
T PF13429_consen 234 LEYLEKALKLNPDDPLWLLAYADAL-EQAGRKDEALRLRRQALRLLR 279 (280)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHH-T--------------------
T ss_pred ccccccccccccccccccccccccc-ccccccccccccccccccccC
Confidence 7666554 3332 456777777777776666554
No 182
>KOG1840|consensus
Probab=97.74 E-value=0.0026 Score=75.22 Aligned_cols=113 Identities=18% Similarity=0.167 Sum_probs=74.3
Q ss_pred HhhhcCCHHHHHHHHHHcCcccchhhhHhhhcHHHHHHHhhcCCChHHHHHHHHHHHhccCHHHHHHHHHHhhCh-----
Q psy14927 5 ETMKNGDIDRAIRMFEKAETHQQHVPRMLLENTDKLEKYIIQSKDPVLLKWWAQYIESTEDMDLAMKYYEEARDY----- 79 (1074)
Q Consensus 5 ~~~~~g~~~eA~~~Ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~----- 79 (1074)
-...+|+|++|+.+++.+-+. ...-.+ .....=..+..++|.++.+.+++.+|+..|..|=++
T Consensus 208 ~y~~~g~~e~A~~l~k~Al~~----l~k~~G--------~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~ 275 (508)
T KOG1840|consen 208 MYAVQGRLEKAEPLCKQALRI----LEKTSG--------LKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVF 275 (508)
T ss_pred HHHHhccHHHHHHHHHHHHHH----HHHccC--------ccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhc
Confidence 456789999999999988743 111111 000000235558999999999999999999997655
Q ss_pred -----------hhhhhHhhccCCHHHHHHHHHhc----------CCh---HHHHHHHHHHHhcCChHHHHHHHH
Q psy14927 80 -----------LSMVRVLCFLQDFSRAAELANAS----------GDT---AAAYHLARQYENSGQFDEAIHFYS 129 (1074)
Q Consensus 80 -----------~~~vr~l~~~~~~~~a~~i~~~~----------~~~---~~~~~la~~~~~~g~~~~Ai~~y~ 129 (1074)
.++.-+|+..|++++|...+... ... .....++..|+..|++++|+.+|.
T Consensus 276 G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q 349 (508)
T KOG1840|consen 276 GEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQ 349 (508)
T ss_pred CCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHH
Confidence 23334477778877777665421 111 124467777778888888888877
No 183
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=97.72 E-value=0.00017 Score=87.07 Aligned_cols=46 Identities=24% Similarity=0.332 Sum_probs=35.7
Q ss_pred CCCeeeCCCCCCCCCCEEEecccCC-CC--------CcHHHHHHHHHHHHHHhhC
Q psy14927 1027 KGRVPVNSRFQTVIPNIFAIGDCIH-GP--------MLAHKAEDEGIVCVEGIAG 1072 (1074)
Q Consensus 1027 ~G~I~Vd~~~~ts~~~IyAiGD~~~-~~--------~~~~~A~~~G~~aA~~I~~ 1072 (1074)
-|.|.||.+.+|++||+||+|+|+. +. .....|.-.|++|+.+++.
T Consensus 333 ~GGi~vd~~~~t~I~GLyAaGE~a~~g~hGanrl~g~sl~~~~v~G~~Ag~~aa~ 387 (488)
T TIGR00551 333 CGGISVDDHGRTTVPGLYAIGEVACTGLHGANRLASNSLLECLVFGWSAAEDISR 387 (488)
T ss_pred cCCEEECCCCcccCCCEEECccccccccCcccccchhHHHHHHHHHHHHHHHHHh
Confidence 3679999999999999999999963 21 1345677888888888763
No 184
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=97.71 E-value=0.00028 Score=86.83 Aligned_cols=45 Identities=22% Similarity=0.318 Sum_probs=34.9
Q ss_pred CCCeeeCCCCC----CCCCCEEEecccCC-C--------CCcHHHHHHHHHHHHHHhh
Q psy14927 1027 KGRVPVNSRFQ----TVIPNIFAIGDCIH-G--------PMLAHKAEDEGIVCVEGIA 1071 (1074)
Q Consensus 1027 ~G~I~Vd~~~~----ts~~~IyAiGD~~~-~--------~~~~~~A~~~G~~aA~~I~ 1071 (1074)
-|.|.||...+ |++||+||+|+|+. + ......|+-.|++|+.+++
T Consensus 342 ~GGi~id~~~~v~~~t~I~GLyAaGe~a~~g~hGa~rl~g~sl~~a~v~G~~Ag~~aa 399 (566)
T TIGR01812 342 MGGIPTDYTGRVICETIVKGLFAAGECACVSVHGANRLGGNSLLELVVFGRIAGEAAA 399 (566)
T ss_pred CCCeEECcCcccccCcccCCeeecccccccCcCcccccchhhHHHHHHHHHHHHHHHH
Confidence 36788888888 99999999999874 2 1245667888888888775
No 185
>KOG2495|consensus
Probab=97.67 E-value=6.1e-05 Score=84.07 Aligned_cols=102 Identities=20% Similarity=0.183 Sum_probs=74.3
Q ss_pred hhhhhccccchHHHHHHHhh-------hhhhhccccccccchhhhhh-hhhHHHhhhhhhHHHHhhhCCeEEEee-eEEE
Q psy14927 796 VVLNTLGNCAAVQANYHLAT-------KLFTQAGDKGVKLNLETMMG-TKSAAVKALTGGIAHLFKSNKVTQLNG-HGKI 866 (1074)
Q Consensus 796 ~VviiGgG~AGl~aA~~la~-------~l~e~~~~~g~~~~~~~~~~-~~~~~~~~l~~~~~~~l~~~gV~~~~g-~v~~ 866 (1074)
++|||||||.|+..|-+|+. .++...... ..+.+-...+ -...+-+.+..+..+++.+.||++..| .|..
T Consensus 220 h~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~-i~vtLiEA~d~iL~mFdkrl~~yae~~f~~~~I~~~~~t~Vk~ 298 (491)
T KOG2495|consen 220 HFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKD-IKVTLIEAADHILNMFDKRLVEYAENQFVRDGIDLDTGTMVKK 298 (491)
T ss_pred EEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhh-eEEEeeccchhHHHHHHHHHHHHHHHHhhhccceeecccEEEe
Confidence 58999999999999999998 111111111 1111111111 122233667777889999999999999 5788
Q ss_pred ecCCeEEEEeCCCCeeEEEcCeEEEccCCCCC
Q psy14927 867 TGPNTVTVIKSDGSTEEVKTKNILIATGSEVT 898 (1074)
Q Consensus 867 id~~~~~v~~~~G~~~~i~~d~lIIATG~~p~ 898 (1074)
+++.++.+.+.+|+..++.|--||-|||..|+
T Consensus 299 V~~~~I~~~~~~g~~~~iPYG~lVWatG~~~r 330 (491)
T KOG2495|consen 299 VTEKTIHAKTKDGEIEEIPYGLLVWATGNGPR 330 (491)
T ss_pred ecCcEEEEEcCCCceeeecceEEEecCCCCCc
Confidence 99999999888998889999999999999874
No 186
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=97.61 E-value=0.025 Score=66.49 Aligned_cols=246 Identities=11% Similarity=0.080 Sum_probs=147.2
Q ss_pred hcHHHHHHHhhcC----CChHHHHHH-HHHHHhccCHHHHHHHHHHhhChh---------hhhhHhhccCCHHHHHHHHH
Q psy14927 35 ENTDKLEKYIIQS----KDPVLLKWW-AQYIESTEDMDLAMKYYEEARDYL---------SMVRVLCFLQDFSRAAELAN 100 (1074)
Q Consensus 35 ~~~~~~~~~~~~~----~~~~l~~~~-a~~~e~~~~~~~A~~~y~~a~d~~---------~~vr~l~~~~~~~~a~~i~~ 100 (1074)
+||.+++..+.+. +.|.+..-. |+++...|+++.|.++|.++.... ...+++...|+++.|.+..+
T Consensus 98 Gd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~ 177 (398)
T PRK10747 98 GDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVD 177 (398)
T ss_pred CCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 6888888777763 235555544 788899999999999999866531 12567888999999999776
Q ss_pred -----hcCChHHHHHHHHHHHhcCChHHHHHHHHHhCCh---HHH-HH-HHHHhCchHHHHHHh-hhcCchhHHHHHHHH
Q psy14927 101 -----ASGDTAAAYHLARQYENSGQFDEAIHFYSVAGSC---GNA-VR-LCKEQALDDQLWNLA-LSAGPSEQIEAATYL 169 (1074)
Q Consensus 101 -----~~~~~~~~~~la~~~~~~g~~~~Ai~~y~~a~~~---~~A-~~-la~~~~~~~~~~~l~-~~~~~~~~~~~A~~~ 169 (1074)
.+++..+...++..|...|++++|++++-...+. +.+ .. +-..- +-.+...+ .....+....+-+-+
T Consensus 178 ~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a--~~~l~~~~~~~~~~~~l~~~w~~l 255 (398)
T PRK10747 178 KLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQA--WIGLMDQAMADQGSEGLKRWWKNQ 255 (398)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHH--HHHHHHHHHHhcCHHHHHHHHHhC
Confidence 4678889999999999999999999776665543 211 11 11000 00001111 111111211111111
Q ss_pred -cc--CC---hhHHHHHHHHhCChHHHHHHHHhhccCCcchHHHHHHHHHHhcCCChhhHHHhhhhc--chHHHHHHHHH
Q psy14927 170 -ET--IE---PDKAVLLYHKAGALHKALDLAFKLTLSNSGLVFQIKAMKCLLKSGDTNKIIFFAGVS--RMKEIYVMAAN 241 (1074)
Q Consensus 170 -e~--~~---~~~A~~ly~kaG~~~kAl~l~~~~~~~~~~~~~~~~a~k~l~~~~~~~~~i~~a~~~--r~~~l~~~aa~ 241 (1074)
.. .+ ....+..+..+|++.+|.+++.+. |-+..|.+.+..++... +..+.-..+-.
T Consensus 256 p~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~----------------l~~~~~~~l~~l~~~l~~~~~~~al~~~e~ 319 (398)
T PRK10747 256 SRKTRHQVALQVAMAEHLIECDDHDTAQQIILDG----------------LKRQYDERLVLLIPRLKTNNPEQLEKVLRQ 319 (398)
T ss_pred CHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHH----------------HhcCCCHHHHHHHhhccCCChHHHHHHHHH
Confidence 11 12 245788899999999999998663 11233333333333221 11112222233
Q ss_pred HHhcCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHH-------------HhHHHHhhcCHHHHHHHHHHHHH
Q psy14927 242 YLQSSDWKSQPELLKSIISFYSKGKAPHLLANFYVSC-------------AQVEIDEFGNYEKGLGALNEAKR 301 (1074)
Q Consensus 242 yl~~~~~~~~~~~~~~i~~~Y~k~~~~~~aa~~~~~~-------------a~~ei~e~~~y~~a~~~l~~a~~ 301 (1074)
++... ..+|.....+.+++...+.|.+|-..+... ++.. +.-|+.++|.+.+.++..
T Consensus 320 ~lk~~--P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~-~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 320 QIKQH--GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADAL-DRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHhhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHH-HHcCCHHHHHHHHHHHHh
Confidence 33322 455666667788888888888877555443 5555 667777777777766654
No 187
>KOG1840|consensus
Probab=97.60 E-value=0.00076 Score=79.71 Aligned_cols=156 Identities=19% Similarity=0.231 Sum_probs=99.9
Q ss_pred hhhcCCHHHHHHHHHHcCcccchhhhHhhh--cHHHHHHHhhcCCChHHHHHHHHHHHhccCHHHHHHHHHHhhCh----
Q psy14927 6 TMKNGDIDRAIRMFEKAETHQQHVPRMLLE--NTDKLEKYIIQSKDPVLLKWWAQYIESTEDMDLAMKYYEEARDY---- 79 (1074)
Q Consensus 6 ~~~~g~~~eA~~~Ye~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~---- 79 (1074)
+.++++|++|+.+|+++-+.. .-.++ ++.. -..+..+|..+-.+|++++|..++.+|=++
T Consensus 251 y~~~~k~~eAv~ly~~AL~i~----e~~~G~~h~~v----------a~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~ 316 (508)
T KOG1840|consen 251 YRSLGKYDEAVNLYEEALTIR----EEVFGEDHPAV----------AATLNNLAVLYYKQGKFAEAEEYCERALEIYEKL 316 (508)
T ss_pred HHHhccHHHHHHHHHHHHHHH----HHhcCCCCHHH----------HHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHh
Confidence 467899999999999998433 33222 1111 336667888889999999999999887655
Q ss_pred ------------hhhhhHhhccCCHHHHHHHHHhcC----------ChH---HHHHHHHHHHhcCChHHHHHHHHHhCCh
Q psy14927 80 ------------LSMVRVLCFLQDFSRAAELANASG----------DTA---AAYHLARQYENSGQFDEAIHFYSVAGSC 134 (1074)
Q Consensus 80 ------------~~~vr~l~~~~~~~~a~~i~~~~~----------~~~---~~~~la~~~~~~g~~~~Ai~~y~~a~~~ 134 (1074)
.++.-+++..+.+++|..+.+..- ++. --..+|..|..+|.+++|.+||.
T Consensus 317 ~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k----- 391 (508)
T KOG1840|consen 317 LGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYK----- 391 (508)
T ss_pred hccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHH-----
Confidence 344556888899999988877421 111 12377888888999999999875
Q ss_pred HHHHHHHHHhCch-HHHHHHhhhcCchhHHHH-HHHHccCChhHHHHHHHHhCChH
Q psy14927 135 GNAVRLCKEQALD-DQLWNLALSAGPSEQIEA-ATYLETIEPDKAVLLYHKAGALH 188 (1074)
Q Consensus 135 ~~A~~la~~~~~~-~~~~~l~~~~~~~~~~~~-A~~~e~~~~~~A~~ly~kaG~~~ 188 (1074)
+|+...++.+-- +..++.. +-.. ..|.+.+++..|..+|..++...
T Consensus 392 -~ai~~~~~~~~~~~~~~~~~-------l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 392 -KAIQILRELLGKKDYGVGKP-------LNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred -HHHHHHHhcccCcChhhhHH-------HHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 455555544211 1111111 1122 34444466777888877665444
No 188
>KOG0985|consensus
Probab=97.58 E-value=0.01 Score=72.15 Aligned_cols=91 Identities=18% Similarity=0.259 Sum_probs=78.8
Q ss_pred hcCCHHHHHHHHHHcCcccchhhhHhhh---cHHHHHHHhhcCCChHHHHHHHHHHHhccCHHHHHHHHHHhhC---hhh
Q psy14927 8 KNGDIDRAIRMFEKAETHQQHVPRMLLE---NTDKLEKYIIQSKDPVLLKWWAQYIESTEDMDLAMKYYEEARD---YLS 81 (1074)
Q Consensus 8 ~~g~~~eA~~~Ye~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d---~~~ 81 (1074)
+.+-++||-..|.|-+-+. .+..++++ +.+++.+|-.+.+.|.+|.++|+.-...|...+|.+.|.+|.| |..
T Consensus 1060 ~~~LyEEAF~ifkkf~~n~-~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyikadDps~y~e 1138 (1666)
T KOG0985|consen 1060 ENQLYEEAFAIFKKFDMNV-SAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKADDPSNYLE 1138 (1666)
T ss_pred hhhHHHHHHHHHHHhcccH-HHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhcCCcHHHHH
Confidence 4566899999999998777 77888875 6789999999999999999999999999999999999999987 466
Q ss_pred hhhHhhccCCHHHHHHHH
Q psy14927 82 MVRVLCFLQDFSRAAELA 99 (1074)
Q Consensus 82 ~vr~l~~~~~~~~a~~i~ 99 (1074)
+|++-...|.|++..+..
T Consensus 1139 Vi~~a~~~~~~edLv~yL 1156 (1666)
T KOG0985|consen 1139 VIDVASRTGKYEDLVKYL 1156 (1666)
T ss_pred HHHHHHhcCcHHHHHHHH
Confidence 777788888888877653
No 189
>PLN02463 lycopene beta cyclase
Probab=97.57 E-value=0.0002 Score=84.70 Aligned_cols=102 Identities=16% Similarity=0.043 Sum_probs=65.4
Q ss_pred chhhhhhccccchHHHHHHHhh-----hhhhhccccc-----ccc-------chhhhhhh--------------------
Q psy14927 794 RQVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKG-----VKL-------NLETMMGT-------------------- 836 (1074)
Q Consensus 794 k~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g-----~~~-------~~~~~~~~-------------------- 836 (1074)
..+|+||||||||+++|..+++ .++|+.+... +.+ .+......
T Consensus 28 ~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~p~~~g~w~~~l~~lgl~~~l~~~w~~~~v~~~~~~~~~~~~~ 107 (447)
T PLN02463 28 VVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIWPNNYGVWVDEFEALGLLDCLDTTWPGAVVYIDDGKKKDLDRP 107 (447)
T ss_pred CceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchhccccchHHHHHHHCCcHHHHHhhCCCcEEEEeCCCCccccCc
Confidence 5579999999999999999998 5777644211 110 00000000
Q ss_pred -hhHHHhhhhhhHHHHhhhCCeEEEeeeEEEecC--CeEEEEeCCCCeeEEEcCeEEEccCCCC
Q psy14927 837 -KSAAVKALTGGIAHLFKSNKVTQLNGHGKITGP--NTVTVIKSDGSTEEVKTKNILIATGSEV 897 (1074)
Q Consensus 837 -~~~~~~~l~~~~~~~l~~~gV~~~~g~v~~id~--~~~~v~~~~G~~~~i~~d~lIIATG~~p 897 (1074)
..-....+...+.+.+...||+++.++|+.++. +...|++++| .++.+|.||.|+|..+
T Consensus 108 y~~V~R~~L~~~Ll~~~~~~GV~~~~~~V~~I~~~~~~~~V~~~dG--~~i~A~lVI~AdG~~s 169 (447)
T PLN02463 108 YGRVNRKKLKSKMLERCIANGVQFHQAKVKKVVHEESKSLVVCDDG--VKIQASLVLDATGFSR 169 (447)
T ss_pred ceeEEHHHHHHHHHHHHhhcCCEEEeeEEEEEEEcCCeEEEEECCC--CEEEcCEEEECcCCCc
Confidence 000011222334555566799998777777753 4567778888 6899999999999875
No 190
>PRK09077 L-aspartate oxidase; Provisional
Probab=97.55 E-value=0.00051 Score=83.72 Aligned_cols=46 Identities=24% Similarity=0.216 Sum_probs=35.9
Q ss_pred CCCeeeCCCCCCCCCCEEEecccCC-C--------CCcHHHHHHHHHHHHHHhhC
Q psy14927 1027 KGRVPVNSRFQTVIPNIFAIGDCIH-G--------PMLAHKAEDEGIVCVEGIAG 1072 (1074)
Q Consensus 1027 ~G~I~Vd~~~~ts~~~IyAiGD~~~-~--------~~~~~~A~~~G~~aA~~I~~ 1072 (1074)
-|.|.||.+.+|++||+||+|+|+. + ......|.-.|++|+.+++.
T Consensus 353 ~GGi~vd~~~~t~I~GLyAaGE~a~~g~hGanrl~gnsl~~~~vfG~~Ag~~aa~ 407 (536)
T PRK09077 353 CGGVMVDLHGRTDLDGLYAIGEVSYTGLHGANRMASNSLLECLVYGRSAAEDILS 407 (536)
T ss_pred cCCeeECCCCccccCCEEecccccccccCCCccchhhhHHHHHHHHHHHHHHHHH
Confidence 3678999999999999999999873 2 12355677788888888753
No 191
>KOG1586|consensus
Probab=97.55 E-value=0.011 Score=61.18 Aligned_cols=104 Identities=26% Similarity=0.356 Sum_probs=64.4
Q ss_pred ccCHHHHHHHHHHhhChhhhhhHhhccCC-HHHHHHHHHhcC---ChHHHHHHHHHHHhcCChH-------HHHHHHHHh
Q psy14927 63 TEDMDLAMKYYEEARDYLSMVRVLCFLQD-FSRAAELANASG---DTAAAYHLARQYENSGQFD-------EAIHFYSVA 131 (1074)
Q Consensus 63 ~~~~~~A~~~y~~a~d~~~~vr~l~~~~~-~~~a~~i~~~~~---~~~~~~~la~~~~~~g~~~-------~Ai~~y~~a 131 (1074)
.+.+++|.++|.+|++...+..=...-|+ +-+|.++...++ |.+.+|.-|-.|-+.++.. .||+.|+.-
T Consensus 27 ~~k~eeAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk~~~~eAv~cL~~aieIyt~~ 106 (288)
T KOG1586|consen 27 SNKYEEAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKKVDPEEAVNCLEKAIEIYTDM 106 (288)
T ss_pred CcchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHhh
Confidence 34677888888887777665544333333 344555544444 3556666665555555654 445556666
Q ss_pred CChHHHHHHHHHhCchHHHHHHhhhcCchhHHHHHHHHcc--CChhHHHHHHHHhCCh
Q psy14927 132 GSCGNAVRLCKEQALDDQLWNLALSAGPSEQIEAATYLET--IEPDKAVLLYHKAGAL 187 (1074)
Q Consensus 132 ~~~~~A~~la~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~--~~~~~A~~ly~kaG~~ 187 (1074)
|+|..|-+ - ..++|++||+ .++++|+.+|..||.+
T Consensus 107 Grf~~aAk---~------------------~~~iaEiyEsdl~d~ekaI~~YE~Aae~ 143 (288)
T KOG1586|consen 107 GRFTMAAK---H------------------HIEIAEIYESDLQDFEKAIAHYEQAAEY 143 (288)
T ss_pred hHHHHHHh---h------------------hhhHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 66554331 1 2368999999 4689999999888765
No 192
>KOG1126|consensus
Probab=97.55 E-value=0.003 Score=74.43 Aligned_cols=254 Identities=17% Similarity=0.042 Sum_probs=160.5
Q ss_pred hHHHHHHHHHHHhccCHHHHHHHHHHhhChhh--------hhhHhhccCCHHHHHHHHHh-----cCChHHHHHHHHHHH
Q psy14927 50 PVLLKWWAQYIESTEDMDLAMKYYEEARDYLS--------MVRVLCFLQDFSRAAELANA-----SGDTAAAYHLARQYE 116 (1074)
Q Consensus 50 ~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~~~--------~vr~l~~~~~~~~a~~i~~~-----~~~~~~~~~la~~~~ 116 (1074)
.=.+-+.|+.+-+.++|++|.++|....+... ---+|.|+-+--+..-++++ ..++++.+-+|+.|-
T Consensus 353 ~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfS 432 (638)
T KOG1126|consen 353 GWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFS 432 (638)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhh
Confidence 34667789999999999999999999877522 12237777777777777763 468899999999999
Q ss_pred hcCChHHHHHHHHHhCChHHHHHHHHHhCchHHHHHHhhh-cCchhHHHHHHHHcc--C---C----hhHHHHHHHHhCC
Q psy14927 117 NSGQFDEAIHFYSVAGSCGNAVRLCKEQALDDQLWNLALS-AGPSEQIEAATYLET--I---E----PDKAVLLYHKAGA 186 (1074)
Q Consensus 117 ~~g~~~~Ai~~y~~a~~~~~A~~la~~~~~~~~~~~l~~~-~~~~~~~~~A~~~e~--~---~----~~~A~~ly~kaG~ 186 (1074)
-|+|.+.||++|.+|-+.|.-|..|-.. +.-+ ...+++-.+..+|-. + + +--=+..|.|.++
T Consensus 433 LQkdh~~Aik~f~RAiQldp~faYayTL--------lGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek 504 (638)
T KOG1126|consen 433 LQKDHDTAIKCFKRAIQLDPRFAYAYTL--------LGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEK 504 (638)
T ss_pred hhhHHHHHHHHHHHhhccCCccchhhhh--------cCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccch
Confidence 9999999999999999999877655433 1222 333555566666643 1 1 2334666777777
Q ss_pred hHHHHHHHHhhccCCcchHHHHHHHHHHhcCCChhhHHHhhhhcchHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHccC
Q psy14927 187 LHKALDLAFKLTLSNSGLVFQIKAMKCLLKSGDTNKIIFFAGVSRMKEIYVMAANYLQSSDWKSQPELLKSIISFYSKGK 266 (1074)
Q Consensus 187 ~~kAl~l~~~~~~~~~~~~~~~~a~k~l~~~~~~~~~i~~a~~~r~~~l~~~aa~yl~~~~~~~~~~~~~~i~~~Y~k~~ 266 (1074)
++-|.-.+.+.-.. -..+.-.+-++-.+|.+.|
T Consensus 505 ~e~Ae~~fqkA~~I-----------------------------------------------NP~nsvi~~~~g~~~~~~k 537 (638)
T KOG1126|consen 505 LEFAEFHFQKAVEI-----------------------------------------------NPSNSVILCHIGRIQHQLK 537 (638)
T ss_pred hhHHHHHHHhhhcC-----------------------------------------------CccchhHHhhhhHHHHHhh
Confidence 77776554442110 0111234445555555555
Q ss_pred CHHHHHHHHHHHHhHH------HHhhcCHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhhcCChHHHhhHH
Q psy14927 267 APHLLANFYVSCAQVE------IDEFGNYEKGLGALNEAKRCLLKHNDSMYETLKSSVVEKLAEVEIDEFGNYEKGLGAL 340 (1074)
Q Consensus 267 ~~~~aa~~~~~~a~~e------i~e~~~y~~a~~~l~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 340 (1074)
..++|-.+|+.....+ +-.-+.-.....-+.+|+..|++-+.-+|+| .+.-..+.++|.+ +|.++.|..
T Consensus 538 ~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~e--s~v~~llgki~k~-~~~~~~Al~-- 612 (638)
T KOG1126|consen 538 RKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQE--SSVFALLGKIYKR-LGNTDLALL-- 612 (638)
T ss_pred hhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcch--HHHHHHHHHHHHH-HccchHHHH--
Confidence 5555555555443221 0111222233344556666677777777765 2333466899999 899999988
Q ss_pred HHHHHHHhhccCcchhHHHHHHHHH
Q psy14927 341 NEAKRCLLKHNDSMYETLKSSVVEK 365 (1074)
Q Consensus 341 ~~~~~~~~~~~~~~~~i~~~~~~~~ 365 (1074)
.=..-...-|+... |-.+.+++.
T Consensus 613 -~f~~A~~ldpkg~~-i~~k~~~~~ 635 (638)
T KOG1126|consen 613 -HFSWALDLDPKGAQ-IQIKAAIER 635 (638)
T ss_pred -hhHHHhcCCCccch-hhHHHHhhh
Confidence 33444455677665 555545543
No 193
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=97.54 E-value=0.00097 Score=86.19 Aligned_cols=45 Identities=22% Similarity=0.127 Sum_probs=36.8
Q ss_pred CCCeeeCCCCCCCCCCEEEecccCCC-CCcHHHHHHHHHHHHHHhh
Q psy14927 1027 KGRVPVNSRFQTVIPNIFAIGDCIHG-PMLAHKAEDEGIVCVEGIA 1071 (1074)
Q Consensus 1027 ~G~I~Vd~~~~ts~~~IyAiGD~~~~-~~~~~~A~~~G~~aA~~I~ 1071 (1074)
.|.|.||.+++|++||+||+|||+.. ......+.-.|+.|+.+++
T Consensus 361 ~GGi~vd~~~~T~v~GLfAaGE~a~~~~nsl~~a~v~G~~Ag~~a~ 406 (897)
T PRK13800 361 ASGVWVDEHARTTVPGLYAAGDLACVPHNYMIGAFVFGDLAGAHAA 406 (897)
T ss_pred cceEEecCCCcccCCCeEechhccCcchhhhhhHHHhHHHHHHHHH
Confidence 47899999999999999999999764 3345567888888888764
No 194
>PRK07804 L-aspartate oxidase; Provisional
Probab=97.54 E-value=0.0005 Score=83.86 Aligned_cols=45 Identities=22% Similarity=0.221 Sum_probs=33.1
Q ss_pred CCCeeeCCCCCCCCCCEEEecccCC-C----CCc----HHHHHHHHHHHHHHhh
Q psy14927 1027 KGRVPVNSRFQTVIPNIFAIGDCIH-G----PML----AHKAEDEGIVCVEGIA 1071 (1074)
Q Consensus 1027 ~G~I~Vd~~~~ts~~~IyAiGD~~~-~----~~~----~~~A~~~G~~aA~~I~ 1071 (1074)
-|.|.||..++|++||+||+|||+. + ..+ ...+.-.|+.++.+++
T Consensus 357 ~GGi~vd~~~~t~i~GLyAaGe~~~~g~hGa~~l~~~sl~~~~v~G~~ag~~aa 410 (541)
T PRK07804 357 CGGVVTDVYGRTSVPGLYAAGEVACTGVHGANRLASNSLLEGLVVGERAGAAAA 410 (541)
T ss_pred CCCEEECCCCcccCCCeEEcccccccccCCCcccHHHHHHHHHHHHHHHHHHHH
Confidence 4778999999999999999999864 1 122 2345556777777765
No 195
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=97.53 E-value=0.00024 Score=81.60 Aligned_cols=59 Identities=17% Similarity=0.403 Sum_probs=47.1
Q ss_pred HHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccCCc
Q psy14927 950 VAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRR 1009 (1074)
Q Consensus 950 ~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~ 1009 (1074)
+.+.+.+.+++.|+++++++++..+..+++++.+.+.+.. +|+.+++.+|+||-|-|..
T Consensus 113 l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~~~~~~~~~~~-~g~~~~i~adlvVgADG~~ 171 (356)
T PF01494_consen 113 LDRALREEAEERGVDIRFGTRVVSIEQDDDGVTVVVRDGE-DGEEETIEADLVVGADGAH 171 (356)
T ss_dssp HHHHHHHHHHHHTEEEEESEEEEEEEEETTEEEEEEEETC-TCEEEEEEESEEEE-SGTT
T ss_pred HHHhhhhhhhhhhhhheeeeeccccccccccccccccccc-CCceeEEEEeeeecccCcc
Confidence 5567778888889999999999999988888777776643 4556689999999998865
No 196
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=97.51 E-value=0.00077 Score=80.50 Aligned_cols=65 Identities=20% Similarity=0.316 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHhCCCEEEeCceEEEEEec--CC-e--EEEEEeeccCCCCc---eEEEcCEEEEccCCcccCCcc
Q psy14927 948 GEVAKQFQRILGKQGMQFKLGTKVTGASKS--GD-N--ITVTIENVKDPTKK---EELSCDALLVCVGRRPYTHNL 1015 (1074)
Q Consensus 948 ~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~--~~-~--~~v~~~~~~~~g~~---~~i~~D~vi~a~G~~p~~~~l 1015 (1074)
+.+...+.+.|+++||+|+++++|+++..+ ++ + ..|.+.. +|++ ...+.|.||+++|.-....-+
T Consensus 226 eSLV~PL~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~---~~~~~~I~l~~~DlVivTnGs~t~ns~~ 298 (576)
T PRK13977 226 ESLVLPLIKYLEDHGVDFQYGTKVTDIDFDITGGKKTATAIHLTR---NGKEETIDLTEDDLVFVTNGSITESSTY 298 (576)
T ss_pred hHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCCceEEEEEEEEe---CCceeEEEecCCCEEEEeCCcCcccccc
Confidence 678888999999999999999999998864 22 2 3444443 2333 345799999999976544433
No 197
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=97.50 E-value=0.047 Score=64.45 Aligned_cols=259 Identities=14% Similarity=0.087 Sum_probs=141.9
Q ss_pred hcHHHHHHHhhc----CCChHHH-HHHHHHHHhccCHHHHHHHHHHh----hChhh-----hhhHhhccCCHHHHHHHHH
Q psy14927 35 ENTDKLEKYIIQ----SKDPVLL-KWWAQYIESTEDMDLAMKYYEEA----RDYLS-----MVRVLCFLQDFSRAAELAN 100 (1074)
Q Consensus 35 ~~~~~~~~~~~~----~~~~~l~-~~~a~~~e~~~~~~~A~~~y~~a----~d~~~-----~vr~l~~~~~~~~a~~i~~ 100 (1074)
++|..++..+.+ ..+|.+. ...|+.+...|+++.|.++|.++ ++..- .++++...|+++.|.+..+
T Consensus 98 g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~ 177 (409)
T TIGR00540 98 GDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVD 177 (409)
T ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 577766666655 2334444 34499999999999999999985 33321 3666777999998887765
Q ss_pred -----hcCChHHHHHHHHHHHhcCChHHHHHHHHHhCCh----HHHHHHHHHhCchHHHHHHhhh-cCchhHHHHHHHHc
Q psy14927 101 -----ASGDTAAAYHLARQYENSGQFDEAIHFYSVAGSC----GNAVRLCKEQALDDQLWNLALS-AGPSEQIEAATYLE 170 (1074)
Q Consensus 101 -----~~~~~~~~~~la~~~~~~g~~~~Ai~~y~~a~~~----~~A~~la~~~~~~~~~~~l~~~-~~~~~~~~~A~~~e 170 (1074)
.+++..+...++..+..+||+++|++.+....+. ++.+.-.+.. .+..++.-+.. ...+....+-+-+-
T Consensus 178 ~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~-a~~~~l~~~~~~~~~~~L~~~~~~~p 256 (409)
T TIGR00540 178 KLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQK-AEIGLLDEAMADEGIDGLLNWWKNQP 256 (409)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHH-HHHHHHHHHHHhcCHHHHHHHHHHCC
Confidence 3678888999999999999999999887766533 1112111110 01111111111 11112222222221
Q ss_pred c---CC---hhHHHHHHHHhCChHHHHHHHHhhcc--CCcc-hHHHHHHHHHHhcCCChhhHHHhhhhcchHHHHHHHHH
Q psy14927 171 T---IE---PDKAVLLYHKAGALHKALDLAFKLTL--SNSG-LVFQIKAMKCLLKSGDTNKIIFFAGVSRMKEIYVMAAN 241 (1074)
Q Consensus 171 ~---~~---~~~A~~ly~kaG~~~kAl~l~~~~~~--~~~~-~~~~~~a~k~l~~~~~~~~~i~~a~~~r~~~l~~~aa~ 241 (1074)
. ++ ...-+.+|...|++.+|++++.+.-. .|+. ..+.+...-..+..+|.+ .....+-.
T Consensus 257 ~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~------------~~~~~~e~ 324 (409)
T TIGR00540 257 RHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNE------------KLEKLIEK 324 (409)
T ss_pred HHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChH------------HHHHHHHH
Confidence 1 12 23455789999999999998877421 1110 000000000001122221 11222222
Q ss_pred HHhcCCCCCCh--hHHHHHHHHHHccCCHHHHHHHHHHH---------------HhHHHHhhcCHHHHHHHHHHHHHHHH
Q psy14927 242 YLQSSDWKSQP--ELLKSIISFYSKGKAPHLLANFYVSC---------------AQVEIDEFGNYEKGLGALNEAKRCLL 304 (1074)
Q Consensus 242 yl~~~~~~~~~--~~~~~i~~~Y~k~~~~~~aa~~~~~~---------------a~~ei~e~~~y~~a~~~l~~a~~~l~ 304 (1074)
.+.. ...+| .....+..+|.+.|.|++|-.+++.. +..- ...|+.+.|...++++...+-
T Consensus 325 ~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll-~~~g~~~~A~~~~~~~l~~~~ 401 (409)
T TIGR00540 325 QAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAF-DQAGDKAEAAAMRQDSLGLML 401 (409)
T ss_pred HHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHh
Confidence 2222 24555 56666777788888888777766631 2222 455666666666666655554
Q ss_pred hcCCC
Q psy14927 305 KHNDS 309 (1074)
Q Consensus 305 ~~~~~ 309 (1074)
..+.+
T Consensus 402 ~~~~~ 406 (409)
T TIGR00540 402 AIQDN 406 (409)
T ss_pred ccccc
Confidence 44433
No 198
>PRK08071 L-aspartate oxidase; Provisional
Probab=97.48 E-value=0.00061 Score=82.50 Aligned_cols=45 Identities=29% Similarity=0.282 Sum_probs=34.9
Q ss_pred CCeeeCCCCCCCCCCEEEecccCC-CC--------CcHHHHHHHHHHHHHHhhC
Q psy14927 1028 GRVPVNSRFQTVIPNIFAIGDCIH-GP--------MLAHKAEDEGIVCVEGIAG 1072 (1074)
Q Consensus 1028 G~I~Vd~~~~ts~~~IyAiGD~~~-~~--------~~~~~A~~~G~~aA~~I~~ 1072 (1074)
|.|.||.+.+|++||+||+|+|+. +. .....+.-.|++|+.++..
T Consensus 333 GGi~vd~~~~t~I~GLyAaGE~a~~g~hGanrl~g~sl~~~~v~G~~Ag~~aa~ 386 (510)
T PRK08071 333 GGVKTNLDGETSIPGLYAIGEVACTGVHGANRLASNSLLEGLVFGKRAAEHILT 386 (510)
T ss_pred CCEEECCCCcccCCCeEEcccccccccCCCcccchHHHHHHHHHHHHHHHHHHh
Confidence 679999999999999999999974 21 1345667778888888753
No 199
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.47 E-value=0.00028 Score=86.84 Aligned_cols=44 Identities=25% Similarity=0.357 Sum_probs=32.7
Q ss_pred CCeeeCCCCCC------CCCCEEEecccCC-C--------CCcHHHHHHHHHHHHHHhh
Q psy14927 1028 GRVPVNSRFQT------VIPNIFAIGDCIH-G--------PMLAHKAEDEGIVCVEGIA 1071 (1074)
Q Consensus 1028 G~I~Vd~~~~t------s~~~IyAiGD~~~-~--------~~~~~~A~~~G~~aA~~I~ 1071 (1074)
|.|.||...+| ++||+||+|+|+. + ......|+-.|++|+.+++
T Consensus 352 GGi~vd~~~~~~~~~~t~I~GLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~Ag~~aa 410 (575)
T PRK05945 352 GGIPVNTDGRVRRSADGLVEGFFAAGECACVSVHGANRLGSNSLLECVVYGRRTGAAIA 410 (575)
T ss_pred CCeeECCCceeccCCCCccCCeEeeeccccccccccccccchhHHHHHHHHHHHHHHHH
Confidence 55777776665 7999999999875 2 1234667788888888875
No 200
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=97.47 E-value=0.00018 Score=84.27 Aligned_cols=100 Identities=13% Similarity=0.068 Sum_probs=64.8
Q ss_pred hhhhhccccchHHHHHHHhh-----hhhhhccccccccchh------------hhh------------hhhh--------
Q psy14927 796 VVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLE------------TMM------------GTKS-------- 838 (1074)
Q Consensus 796 ~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~------------~~~------------~~~~-------- 838 (1074)
+|+||||||||+++|+.|++ +++|+.+..++...+. ... +...
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGNHTYGVWDDDLSDLGLADCVEHVWPDVYEYRFPKQPRKLGTAYG 80 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCCccccccHhhhhhhchhhHHhhcCCCceEEecCCcchhcCCcee
Confidence 38999999999999999988 7788765443321110 000 0000
Q ss_pred -HHHhhhhhhHHHHhhhCCeEEEeeeEEEecC---CeEEEEeCCCCeeEEEcCeEEEccCCCC
Q psy14927 839 -AAVKALTGGIAHLFKSNKVTQLNGHGKITGP---NTVTVIKSDGSTEEVKTKNILIATGSEV 897 (1074)
Q Consensus 839 -~~~~~l~~~~~~~l~~~gV~~~~g~v~~id~---~~~~v~~~~G~~~~i~~d~lIIATG~~p 897 (1074)
-....+...+.+.+...|++++.++|+.+.. ....|++.+| .+++++.||+|+|..+
T Consensus 81 ~i~~~~l~~~l~~~~~~~gv~~~~~~v~~i~~~~~~~~~v~~~~g--~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 81 SVDSTRLHEELLQKCPEGGVLWLERKAIHAEADGVALSTVYCAGG--QRIQARLVIDARGFGP 141 (388)
T ss_pred EEcHHHHHHHHHHHHHhcCcEEEccEEEEEEecCCceeEEEeCCC--CEEEeCEEEECCCCch
Confidence 0002223335555566799998887777653 3456667777 6899999999999876
No 201
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=97.45 E-value=0.00066 Score=83.46 Aligned_cols=45 Identities=27% Similarity=0.370 Sum_probs=35.7
Q ss_pred CCCeeeCCCCCCCCCCEEEecccCC-C--------CCcHHHHHHHHHHHHHHhh
Q psy14927 1027 KGRVPVNSRFQTVIPNIFAIGDCIH-G--------PMLAHKAEDEGIVCVEGIA 1071 (1074)
Q Consensus 1027 ~G~I~Vd~~~~ts~~~IyAiGD~~~-~--------~~~~~~A~~~G~~aA~~I~ 1071 (1074)
.|.|.||.+.+|++||+||+|+|+. + ......|+-.|++|+.+++
T Consensus 358 ~GGi~vd~~~~t~i~GLyAaGe~~~~g~hGanrlggnsl~~a~v~Gr~Ag~~aa 411 (582)
T PRK09231 358 MGGIETDQNCETRIKGLFAVGECSSVGLHGANRLGSNSLAELVVFGRVAGEQAA 411 (582)
T ss_pred CCCEEECCCCccccCCEEecccccccccCCCCCcchhHHHHHHHHHHHHHHHHH
Confidence 4779999999999999999999864 2 1234567778888888875
No 202
>PLN02697 lycopene epsilon cyclase
Probab=97.44 E-value=0.0005 Score=82.70 Aligned_cols=140 Identities=14% Similarity=0.056 Sum_probs=78.1
Q ss_pred HHHHhCCHHHHHHHHHHcCCCCchhhhhcCCCCC-CCccchhhhhhccccchHHHHHHHhh-----hhhhhccccc---c
Q psy14927 756 MYAIARRYDQALSLIQTKHVPLSEELADLLVPPE-SDDQRQVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKG---V 826 (1074)
Q Consensus 756 ~y~~ag~~~~Ai~~~~~~~~~~~~~~~~~~~~~~-~~~~k~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g---~ 826 (1074)
.|.+.|......--+++..+...++.+....++- +++...+|+||||||||+++|..+++ .++++..... +
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~~n~G 148 (529)
T PLN02697 69 DYIKAGGSELLFVQMQANKSMDEQSKIADKLPPISIGDGTLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYG 148 (529)
T ss_pred hhhhccccchhHHHHHhcCCccccccccccCCCCCcccCcccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCCCccc
Confidence 4566666554433344554443333333323322 33335679999999999999999999 5665532211 1
Q ss_pred ccc-------hhhhhh------------hhh---------HHHhhhhhhHHHHhhhCCeEEEeeeEEEecC--CeEE-EE
Q psy14927 827 KLN-------LETMMG------------TKS---------AAVKALTGGIAHLFKSNKVTQLNGHGKITGP--NTVT-VI 875 (1074)
Q Consensus 827 ~~~-------~~~~~~------------~~~---------~~~~~l~~~~~~~l~~~gV~~~~g~v~~id~--~~~~-v~ 875 (1074)
.+. +..... ... -....+...+.+.+...||+++.++|+.+.. +... ++
T Consensus 149 vW~~~l~~lgl~~~i~~~w~~~~v~~~~~~~~~~~~~Yg~V~R~~L~~~Ll~~a~~~GV~~~~~~V~~I~~~~~~~~vv~ 228 (529)
T PLN02697 149 VWEDEFKDLGLEDCIEHVWRDTIVYLDDDKPIMIGRAYGRVSRTLLHEELLRRCVESGVSYLSSKVDRITEASDGLRLVA 228 (529)
T ss_pred cchhHHHhcCcHHHHHhhcCCcEEEecCCceeeccCcccEEcHHHHHHHHHHHHHhcCCEEEeeEEEEEEEcCCcEEEEE
Confidence 100 000000 000 0001222334555566799997778877752 3333 34
Q ss_pred eCCCCeeEEEcCeEEEccCCCC
Q psy14927 876 KSDGSTEEVKTKNILIATGSEV 897 (1074)
Q Consensus 876 ~~~G~~~~i~~d~lIIATG~~p 897 (1074)
+.+| .++.++.||+|+|..+
T Consensus 229 ~~dG--~~i~A~lVI~AdG~~S 248 (529)
T PLN02697 229 CEDG--RVIPCRLATVASGAAS 248 (529)
T ss_pred EcCC--cEEECCEEEECCCcCh
Confidence 5666 5799999999999875
No 203
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=97.44 E-value=0.00035 Score=77.93 Aligned_cols=158 Identities=22% Similarity=0.275 Sum_probs=78.4
Q ss_pred hhcCCHHHHHHHHHHcCcccc--h----hhhHhh--hcHHHHHHHhhc-------CCChHHHHHHHHHHHhccCHHHHHH
Q psy14927 7 MKNGDIDRAIRMFEKAETHQQ--H----VPRMLL--ENTDKLEKYIIQ-------SKDPVLLKWWAQYIESTEDMDLAMK 71 (1074)
Q Consensus 7 ~~~g~~~eA~~~Ye~~~~~~~--~----~~~~~~--~~~~~~~~~~~~-------~~~~~l~~~~a~~~e~~~~~~~A~~ 71 (1074)
-..+++++|+++++++=.... . ...++. ++|.++.+++.+ ..++.+|..+|.++...|++++|++
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~ 167 (280)
T PF13429_consen 88 LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALR 167 (280)
T ss_dssp ------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHH
T ss_pred cccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 356778888877776522221 1 122222 467776666666 4567788888999999999999998
Q ss_pred HHHHhhCh--------hhhhhHhhccCCHHHHHHHHHh-----cCChHHHHHHHHHHHhcCChHHHHHHHHHhCChHHHH
Q psy14927 72 YYEEARDY--------LSMVRVLCFLQDFSRAAELANA-----SGDTAAAYHLARQYENSGQFDEAIHFYSVAGSCGNAV 138 (1074)
Q Consensus 72 ~y~~a~d~--------~~~vr~l~~~~~~~~a~~i~~~-----~~~~~~~~~la~~~~~~g~~~~Ai~~y~~a~~~~~A~ 138 (1074)
+|.++=.. .+.+.+|...|+.+++.++++. ..++.....+|..|...|+.++|+.+|.++..
T Consensus 168 ~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~----- 242 (280)
T PF13429_consen 168 DYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALK----- 242 (280)
T ss_dssp HHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHH-----
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccc-----
Confidence 88875332 3345567778888886666542 34556667788888888888888887765321
Q ss_pred HHHHHhCchHHHHHHhhhcCchhHHHHHHHHcc-CChhHHHHHHHHh
Q psy14927 139 RLCKEQALDDQLWNLALSAGPSEQIEAATYLET-IEPDKAVLLYHKA 184 (1074)
Q Consensus 139 ~la~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~-~~~~~A~~ly~ka 184 (1074)
. ....+..+...|+.++. |++++|..+|.++
T Consensus 243 -----~----------~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 243 -----L----------NPDDPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp -----H----------STT-HHHHHHHHHHHT---------------
T ss_pred -----c----------ccccccccccccccccccccccccccccccc
Confidence 1 12334556678888888 7788888888764
No 204
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.44 E-value=0.0014 Score=80.72 Aligned_cols=44 Identities=23% Similarity=0.326 Sum_probs=30.6
Q ss_pred CCeeeCCCCC------CCCCCEEEecccCC-C--------CCcHHHHHHHHHHHHHHhh
Q psy14927 1028 GRVPVNSRFQ------TVIPNIFAIGDCIH-G--------PMLAHKAEDEGIVCVEGIA 1071 (1074)
Q Consensus 1028 G~I~Vd~~~~------ts~~~IyAiGD~~~-~--------~~~~~~A~~~G~~aA~~I~ 1071 (1074)
|.|.+|...+ |++||+||+|+|+. + ......|.-.|++|+.+++
T Consensus 357 GGi~id~~~~v~~~~~t~IpGLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~Ag~~aa 415 (583)
T PRK08205 357 GGIPTTVDGEVLRDNTTVVPGLYAAGECACVSVHGANRLGTNSLLDINVFGRRAGIAAA 415 (583)
T ss_pred CCeeECCCceEecCCCCCcCCeeeccccccCCCCCCcCCchhhHHHHHHHHHHHHHHHH
Confidence 4555665555 68999999999875 2 1134557778888888765
No 205
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=97.44 E-value=0.00063 Score=79.87 Aligned_cols=81 Identities=17% Similarity=0.199 Sum_probs=59.6
Q ss_pred hhHHhhcCCcEEEEecCCccC-CCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEEeeccCCCCceEEEcC
Q psy14927 922 GSVWGRLGAEVTAIEFMNAIG-GMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCD 1000 (1074)
Q Consensus 922 A~~l~~~G~~Vtlv~~~~~~~-~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D 1000 (1074)
..++...|.+++....+ ++. .......+.+.+.+.+++.||++++++.+.++..+++.+.+++ + +.++.+|
T Consensus 79 ~~~~~~~Gv~~~~~~~g-~~~p~~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~~v~~-~------~~~i~ad 150 (400)
T TIGR00275 79 IDFFESLGLELKVEEDG-RVFPCSDSAADVLDALLNELKELGVEILTNSKVKSIKKDDNGFGVET-S------GGEYEAD 150 (400)
T ss_pred HHHHHHcCCeeEEecCC-EeECCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCeEEEEE-C------CcEEEcC
Confidence 45667889888876533 333 1224477888889999999999999999999987655555543 2 2468999
Q ss_pred EEEEccCCcc
Q psy14927 1001 ALLVCVGRRP 1010 (1074)
Q Consensus 1001 ~vi~a~G~~p 1010 (1074)
.||+|+|...
T Consensus 151 ~VIlAtG~~s 160 (400)
T TIGR00275 151 KVILATGGLS 160 (400)
T ss_pred EEEECCCCcc
Confidence 9999999754
No 206
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=97.43 E-value=0.00021 Score=80.01 Aligned_cols=101 Identities=20% Similarity=0.099 Sum_probs=63.3
Q ss_pred hhhhhccccchHHHHHHHhh-----hhhhhccccccccc-------------------------------------hhhh
Q psy14927 796 VVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLN-------------------------------------LETM 833 (1074)
Q Consensus 796 ~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~-------------------------------------~~~~ 833 (1074)
+|+||||||+|+++|+.|++ +++|+.+..+.... ....
T Consensus 2 dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (295)
T TIGR02032 2 DVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYKPCGGALSPRVLEELDLPLELIVNLVRGARFFSPNGDSVEIPIE 81 (295)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccCccCHhHHHHhcCCchhhhhheeeEEEEcCCCcEEEeccC
Confidence 48999999999999999998 77887654322100 0000
Q ss_pred hh-hhhHHHhhhhhhHHHHhhhCCeEEEee-eEEEe--cCCeEEEEeCCCCeeEEEcCeEEEccCCCC
Q psy14927 834 MG-TKSAAVKALTGGIAHLFKSNKVTQLNG-HGKIT--GPNTVTVIKSDGSTEEVKTKNILIATGSEV 897 (1074)
Q Consensus 834 ~~-~~~~~~~~l~~~~~~~l~~~gV~~~~g-~v~~i--d~~~~~v~~~~G~~~~i~~d~lIIATG~~p 897 (1074)
.. ...-....+...+.+.+.+.|++++.+ +++.+ +++.+.+.+.++ ..++++|+||+|+|...
T Consensus 82 ~~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~a~~vv~a~G~~s 148 (295)
T TIGR02032 82 TELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHDDRVVVIVRGG-EGTVTAKIVIGADGSRS 148 (295)
T ss_pred CCcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeCCEEEEEEcCc-cEEEEeCEEEECCCcch
Confidence 00 000001233344666677789999888 45553 345555555443 25799999999999864
No 207
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=97.42 E-value=0.075 Score=68.88 Aligned_cols=125 Identities=11% Similarity=0.043 Sum_probs=69.2
Q ss_pred hhhcCCHHHHHHHHHHcCcccc-h-hhh--------Hhhh-----cHHHHHHHhhcCCChHHHHHHHHHHHhccCHHHHH
Q psy14927 6 TMKNGDIDRAIRMFEKAETHQQ-H-VPR--------MLLE-----NTDKLEKYIIQSKDPVLLKWWAQYIESTEDMDLAM 70 (1074)
Q Consensus 6 ~~~~g~~~eA~~~Ye~~~~~~~-~-~~~--------~~~~-----~~~~~~~~~~~~~~~~l~~~~a~~~e~~~~~~~A~ 70 (1074)
+.++|++++|.++|+.+-.... . ++. +|.. ...++..+.+....+..-.|.++..+.+..++.+.
T Consensus 386 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (987)
T PRK09782 386 LMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIV 465 (987)
T ss_pred HHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHH
Confidence 4678999999999999876321 2 211 1222 24566666555555555566666666666555555
Q ss_pred HHHHHhhC------hhhhhhHhhccCCHHHHHHHHH----hcCChHHHHHHHHHHHhcCChHHHHHHHHHh
Q psy14927 71 KYYEEARD------YLSMVRVLCFLQDFSRAAELAN----ASGDTAAAYHLARQYENSGQFDEAIHFYSVA 131 (1074)
Q Consensus 71 ~~y~~a~d------~~~~vr~l~~~~~~~~a~~i~~----~~~~~~~~~~la~~~~~~g~~~~Ai~~y~~a 131 (1074)
+.....-+ +.++..++.. +++++|....+ ...+......+|..+...|++++|+..|.++
T Consensus 466 ~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka 535 (987)
T PRK09782 466 RLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQHRAVAYQAYQVEDYATALAAWQKI 535 (987)
T ss_pred HhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 55543222 2334444443 56666666332 1222223334456666777777777766543
No 208
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=97.42 E-value=0.057 Score=69.08 Aligned_cols=115 Identities=13% Similarity=-0.008 Sum_probs=64.9
Q ss_pred HHHHHHHHhcCCCCC--ChhHHHH-HHHHHHccCCHHHHHHHHHHHHhHH-----------------HHhhcCHHHHHHH
Q psy14927 236 YVMAANYLQSSDWKS--QPELLKS-IISFYSKGKAPHLLANFYVSCAQVE-----------------IDEFGNYEKGLGA 295 (1074)
Q Consensus 236 ~~~aa~yl~~~~~~~--~~~~~~~-i~~~Y~k~~~~~~aa~~~~~~a~~e-----------------i~e~~~y~~a~~~ 295 (1074)
+..|...++.+.... .|..... +...|...+++++|...|..+.+.. ..+-|+|++|...
T Consensus 253 ~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~ 332 (765)
T PRK10049 253 YKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTV 332 (765)
T ss_pred HHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHH
Confidence 445555565542222 3544333 5778889999999988887763321 0133667777776
Q ss_pred HHHHHHHHHh------cCCCchHHHHHHHHHHHHHHHHhhcCChHHHhhHHHHHHHHHhhccCcc
Q psy14927 296 LNEAKRCLLK------HNDSMYETLKSSVVEKLAEVEIDEFGNYEKGLGALNEAKRCLLKHNDSM 354 (1074)
Q Consensus 296 l~~a~~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 354 (1074)
|..+...-.. .....|++-..........+++. .|+.+.|+..|.++.. ..|++.
T Consensus 333 l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~-~g~~~eA~~~l~~al~---~~P~n~ 393 (765)
T PRK10049 333 TAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKY-SNDLPQAEMRARELAY---NAPGNQ 393 (765)
T ss_pred HHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHH---hCCCCH
Confidence 6655543211 01122332222233344566667 6999999998777644 366663
No 209
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.40 E-value=0.0041 Score=73.09 Aligned_cols=154 Identities=18% Similarity=0.126 Sum_probs=108.0
Q ss_pred hcHHH------HHHHhhcCCChHHHHHHHHHHHhccCHHHHHHHHHHhhChhhhhhHhhccCCHHHHHHHHHhcCChHHH
Q psy14927 35 ENTDK------LEKYIIQSKDPVLLKWWAQYIESTEDMDLAMKYYEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAA 108 (1074)
Q Consensus 35 ~~~~~------~~~~~~~~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~~~~vr~l~~~~~~~~a~~i~~~~~~~~~~ 108 (1074)
++++. ..+++++.. +......+.++++.|-++.|+++ +.|-+..-.+-..+|+++.|.+++++..+..-.
T Consensus 275 ~d~~~v~~~i~~~~ll~~i~-~~~~~~i~~fL~~~G~~e~AL~~---~~D~~~rFeLAl~lg~L~~A~~~a~~~~~~~~W 350 (443)
T PF04053_consen 275 GDFEEVLRMIAASNLLPNIP-KDQGQSIARFLEKKGYPELALQF---VTDPDHRFELALQLGNLDIALEIAKELDDPEKW 350 (443)
T ss_dssp T-HHH-----HHHHTGGG---HHHHHHHHHHHHHTT-HHHHHHH---SS-HHHHHHHHHHCT-HHHHHHHCCCCSTHHHH
T ss_pred CChhhhhhhhhhhhhcccCC-hhHHHHHHHHHHHCCCHHHHHhh---cCChHHHhHHHHhcCCHHHHHHHHHhcCcHHHH
Confidence 35666 356666555 77888999999999999999976 677776667788999999999999999999999
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhCChHHHHHHHHHhCchHHHHHHhhhcCc--hhHHHHHHHHccCChhHHHHHHHHhCC
Q psy14927 109 YHLARQYENSGQFDEAIHFYSVAGSCGNAVRLCKEQALDDQLWNLALSAGP--SEQIEAATYLETIEPDKAVLLYHKAGA 186 (1074)
Q Consensus 109 ~~la~~~~~~g~~~~Ai~~y~~a~~~~~A~~la~~~~~~~~~~~l~~~~~~--~~~~~~A~~~e~~~~~~A~~ly~kaG~ 186 (1074)
.+||....++|+++-|.+.|.+++.|+.-.=|.-..|..+.+-.++..+.. ......-.+|-.|+.++-+++..++|+
T Consensus 351 ~~Lg~~AL~~g~~~lAe~c~~k~~d~~~L~lLy~~~g~~~~L~kl~~~a~~~~~~n~af~~~~~lgd~~~cv~lL~~~~~ 430 (443)
T PF04053_consen 351 KQLGDEALRQGNIELAEECYQKAKDFSGLLLLYSSTGDREKLSKLAKIAEERGDINIAFQAALLLGDVEECVDLLIETGR 430 (443)
T ss_dssp HHHHHHHHHTTBHHHHHHHHHHCT-HHHHHHHHHHCT-HHHHHHHHHHHHHTT-HHHHHHHHHHHT-HHHHHHHHHHTT-
T ss_pred HHHHHHHHHcCCHHHHHHHHHhhcCccccHHHHHHhCCHHHHHHHHHHHHHccCHHHHHHHHHHcCCHHHHHHHHHHcCC
Confidence 999999999999999999999999999988888877766666555433221 112222233333555555555555555
Q ss_pred hHHHHH
Q psy14927 187 LHKALD 192 (1074)
Q Consensus 187 ~~kAl~ 192 (1074)
+..|.=
T Consensus 431 ~~~A~~ 436 (443)
T PF04053_consen 431 LPEAAL 436 (443)
T ss_dssp HHHHHH
T ss_pred chHHHH
Confidence 555543
No 210
>PRK06847 hypothetical protein; Provisional
Probab=97.39 E-value=0.0011 Score=77.30 Aligned_cols=57 Identities=23% Similarity=0.294 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccCCcc
Q psy14927 948 GEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRP 1010 (1074)
Q Consensus 948 ~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p 1010 (1074)
+.+.+.+.+.+.+.|++++.++++++++.+++++.+.+.+ +.++.+|.||.|.|..+
T Consensus 107 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~------g~~~~ad~vI~AdG~~s 163 (375)
T PRK06847 107 PALARILADAARAAGADVRLGTTVTAIEQDDDGVTVTFSD------GTTGRYDLVVGADGLYS 163 (375)
T ss_pred HHHHHHHHHHHHHhCCEEEeCCEEEEEEEcCCEEEEEEcC------CCEEEcCEEEECcCCCc
Confidence 4566777777888899999999999998876776676654 35799999999999754
No 211
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=97.35 E-value=0.0012 Score=81.06 Aligned_cols=45 Identities=24% Similarity=0.334 Sum_probs=35.4
Q ss_pred CCCeeeCCCCCCCCCCEEEecccCC-C--------CCcHHHHHHHHHHHHHHhh
Q psy14927 1027 KGRVPVNSRFQTVIPNIFAIGDCIH-G--------PMLAHKAEDEGIVCVEGIA 1071 (1074)
Q Consensus 1027 ~G~I~Vd~~~~ts~~~IyAiGD~~~-~--------~~~~~~A~~~G~~aA~~I~ 1071 (1074)
.|.|.+|...+|++||+||+|+|+. + ......|+-.|++|+.+++
T Consensus 357 ~GGi~~d~~~~t~i~GLyAaGe~a~~G~hGanrl~g~sl~~~~v~G~~ag~~aa 410 (580)
T TIGR01176 357 MGGIETDINCETRIKGLFAVGECASVGLHGANRLGSNSLAELVVFGRRAGEAAA 410 (580)
T ss_pred CCCeeECcCcccccCCeEeeecccccCcCCCccccchhHHHHHHHHHHHHHHHH
Confidence 3668999999999999999999864 2 1245567888888888875
No 212
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=97.35 E-value=0.016 Score=62.96 Aligned_cols=219 Identities=22% Similarity=0.221 Sum_probs=129.3
Q ss_pred hChhhhhhHhhccCCHHHHHHHHH-----hcCChHHHHHHHHHHHhcCChHHHHHHHHHhCChHHHHHHHHHhCchHHHH
Q psy14927 77 RDYLSMVRVLCFLQDFSRAAELAN-----ASGDTAAAYHLARQYENSGQFDEAIHFYSVAGSCGNAVRLCKEQALDDQLW 151 (1074)
Q Consensus 77 ~d~~~~vr~l~~~~~~~~a~~i~~-----~~~~~~~~~~la~~~~~~g~~~~Ai~~y~~a~~~~~A~~la~~~~~~~~~~ 151 (1074)
.||..=+.+| -.+++++|.++-. ++...++..-+++.|.+.|+++.||.+..-.
T Consensus 37 r~Yv~GlNfL-Ls~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L-------------------- 95 (389)
T COG2956 37 RDYVKGLNFL-LSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTL-------------------- 95 (389)
T ss_pred HHHHhHHHHH-hhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHH--------------------
Confidence 3443334433 3457788876543 4567788889999999999999999864321
Q ss_pred HHhhhcCchhHHHHHHHHccCC--hhHHHHHHHHhCChHHHHHHHHhhccCCcchHHHHHHHHHHh----cCCChhhHHH
Q psy14927 152 NLALSAGPSEQIEAATYLETIE--PDKAVLLYHKAGALHKALDLAFKLTLSNSGLVFQIKAMKCLL----KSGDTNKIIF 225 (1074)
Q Consensus 152 ~l~~~~~~~~~~~~A~~~e~~~--~~~A~~ly~kaG~~~kAl~l~~~~~~~~~~~~~~~~a~k~l~----~~~~~~~~i~ 225 (1074)
.+++.-. |+++. ..+=++=|+.+|-+.+|-+++..+...+ -|...|.+-|+ +..+|+|+|+
T Consensus 96 ---~~spdlT-------~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~---efa~~AlqqLl~IYQ~treW~KAId 162 (389)
T COG2956 96 ---LESPDLT-------FEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEG---EFAEGALQQLLNIYQATREWEKAID 162 (389)
T ss_pred ---hcCCCCc-------hHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcch---hhhHHHHHHHHHHHHHhhHHHHHHH
Confidence 1111100 11111 2344566889999999999988864210 12233444442 2455555555
Q ss_pred hhhhcchHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHhHHHHhhcCHHHHHHHHHHHHHHHHh
Q psy14927 226 FAGVSRMKEIYVMAANYLQSSDWKSQPELLKSIISFYSKGKAPHLLANFYVSCAQVEIDEFGNYEKGLGALNEAKRCLLK 305 (1074)
Q Consensus 226 ~a~~~r~~~l~~~aa~yl~~~~~~~~~~~~~~i~~~Y~k~~~~~~aa~~~~~~a~~ei~e~~~y~~a~~~l~~a~~~l~~ 305 (1074)
.|..+- +.+ +. + .--+.|.||...|+.. .--.|.++|...|..|++.=.+
T Consensus 163 ~A~~L~-------------k~~--~q-~-------------~~~eIAqfyCELAq~~-~~~~~~d~A~~~l~kAlqa~~~ 212 (389)
T COG2956 163 VAERLV-------------KLG--GQ-T-------------YRVEIAQFYCELAQQA-LASSDVDRARELLKKALQADKK 212 (389)
T ss_pred HHHHHH-------------HcC--Cc-c-------------chhHHHHHHHHHHHHH-hhhhhHHHHHHHHHHHHhhCcc
Confidence 443221 111 11 1 1124567778888888 6777888888888777654332
Q ss_pred cCCCchHHHHHHHHHHHHHHHHhhcCChHHHhhHHHHHHHHHhhccCcchhHHHHHHHHHHHHHhhhh
Q psy14927 306 HNDSMYETLKSSVVEKLAEVEIDEFGNYEKGLGALNEAKRCLLKHNDSMYETLKSSVVEKIAEVDKYL 373 (1074)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 373 (1074)
+ .+.+ +++.++++. -|+|.+|++-|.++.+- -|+ .++.+-....+|+.++.+--
T Consensus 213 c-------vRAs--i~lG~v~~~-~g~y~~AV~~~e~v~eQ---n~~-yl~evl~~L~~~Y~~lg~~~ 266 (389)
T COG2956 213 C-------VRAS--IILGRVELA-KGDYQKAVEALERVLEQ---NPE-YLSEVLEMLYECYAQLGKPA 266 (389)
T ss_pred c-------eehh--hhhhHHHHh-ccchHHHHHHHHHHHHh---ChH-HHHHHHHHHHHHHHHhCCHH
Confidence 2 1222 234566667 69999999988877543 343 34444456888997665543
No 213
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=97.34 E-value=0.0016 Score=81.08 Aligned_cols=44 Identities=14% Similarity=0.181 Sum_probs=33.7
Q ss_pred CCeeeCCCCCC-CCCCEEEecccCCC---------CCcHHHHHHHHHHHHHHhh
Q psy14927 1028 GRVPVNSRFQT-VIPNIFAIGDCIHG---------PMLAHKAEDEGIVCVEGIA 1071 (1074)
Q Consensus 1028 G~I~Vd~~~~t-s~~~IyAiGD~~~~---------~~~~~~A~~~G~~aA~~I~ 1071 (1074)
|.|.||.+.+| ++||+||+|+|+.. ......++-.|++|+.+++
T Consensus 373 GGi~vd~~~~t~~I~GLyAaGE~a~~g~hGanrlggnsl~~~~v~G~iAg~~aa 426 (657)
T PRK08626 373 GGIRTNPTGESYGLKGLFSAGEAACWDMHGFNRLGGNSLAETVVAGMIVGKYVA 426 (657)
T ss_pred CCceECCCCCCcccCCEEecccccccCCCCCCccchHHHHHHHHHHHHHHHHHH
Confidence 66899999999 59999999999741 1134567778888887765
No 214
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=97.34 E-value=0.0004 Score=88.38 Aligned_cols=136 Identities=20% Similarity=0.246 Sum_probs=85.9
Q ss_pred HhhhhhccccccccccCCceEEeccchh------hcc------HHHHhccccccccccccccccccccccCCcceEEEEe
Q psy14927 369 VDKYLEMKRNQSFRSSNTDIILPVEKWT------LLS------LARVLEGIEYKVGKFPFAANSRAKTNNDTDGFVKVLG 436 (1074)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (1074)
+++.+.+..|+.+|||..|||.+||..- |+. ...|+.++......|+....+
T Consensus 257 ~~~~G~I~VD~~l~Ts~p~IYAiGD~a~~~~~~~gl~~~a~~~a~vaa~~i~g~~~~~~g~~~~---------------- 320 (847)
T PRK14989 257 VAPRGGIVINDSCQTSDPDIYAIGECASWNNRVFGLVAPGYKMAQVAVDHLLGSENAFEGADLS---------------- 320 (847)
T ss_pred CCCCCcEEECCCCcCCCCCEEEeecceeEcCcccccHHHHHHHHHHHHHHhcCCCcCCCCcccc----------------
Confidence 5677789999999999999999999831 121 222344444332223322222
Q ss_pred ccCCCcccccccccCCCcEEEEeeccCccc-----hhh--hcCCCcceEEEEEECCCCcEEEEEEeCCCh--hHHHHHHH
Q psy14927 437 DKLTDKVLGVHIIGPGIEYKVGKFPFAANS-----RAK--TNNDTDGFVKVLGDKLTDKVLGVHIIGPAA--GELINEAV 507 (1074)
Q Consensus 437 ~~~~~~~lg~~~~~~g~~~~v~~~~~~~~~-----ra~--~~~~~~G~~Kli~~~~~~~ilG~~iiG~~a--~eli~~~a 507 (1074)
..++..|++ +..+. ...+ .+. ....+.++.|+++++++++|||++++|+.+ +++++.+.
T Consensus 321 ---------~~lk~~G~~--v~s~G-~~~~~~~~~~~~~~~~~~~~~y~Klv~~~~~~~LlGa~lvGd~~~~~~l~~~~~ 388 (847)
T PRK14989 321 ---------AKLKLLGVD--VGGIG-DAHGRTPGARSYVYLDESKEIYKRLIVSEDNKTLLGAVLVGDTSDYGNLLQLVL 388 (847)
T ss_pred ---------eEEEECCcc--eEecc-cccCCCCCceeEEEEcCCCCEEEEEEEECCCCEEEEEEEECCHHHHHHHHHHHH
Confidence 111112221 11111 0011 122 123457899999999999999999999965 99998888
Q ss_pred HHHHcCCCHHHHhhhccc---CCccccc
Q psy14927 508 LAMEYGASCEDVARTCHA---HPTVCVE 532 (1074)
Q Consensus 508 ~a~~~~~~~~~l~~~~~~---hPt~s~e 532 (1074)
.++..+.+.++|....++ ||+.+.+
T Consensus 389 ~~~~l~~~~~~l~~~~~~~~~~~~~~~~ 416 (847)
T PRK14989 389 NAIELPENPDSLILPAHAGSGKPSIGVD 416 (847)
T ss_pred cCCCCccchhheecCCCCCCCCCccccc
Confidence 888888888888777765 8887443
No 215
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=97.31 E-value=0.00034 Score=79.93 Aligned_cols=48 Identities=23% Similarity=0.365 Sum_probs=34.7
Q ss_pred hhHHHHhhh-CCeEEEeeeEEEecC---CeEEEEeCCCCeeEEEcCeEEEccCC
Q psy14927 846 GGIAHLFKS-NKVTQLNGHGKITGP---NTVTVIKSDGSTEEVKTKNILIATGS 895 (1074)
Q Consensus 846 ~~~~~~l~~-~gV~~~~g~v~~id~---~~~~v~~~~G~~~~i~~d~lIIATG~ 895 (1074)
..+.+.+.. .+++++.++|+.+.. .-..|.+.+| ..+.+|.||||||+
T Consensus 99 ~~~~~~l~~~~nl~i~~~~V~~l~~e~~~v~GV~~~~g--~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 99 RAMREKLESHPNLTIIQGEVTDLIVENGKVKGVVTKDG--EEIEADAVVLATGT 150 (392)
T ss_dssp HHHHHHHHTSTTEEEEES-EEEEEECTTEEEEEEETTS--EEEEECEEEE-TTT
T ss_pred HHHHHHHhcCCCeEEEEcccceEEecCCeEEEEEeCCC--CEEecCEEEEeccc
Confidence 335555555 689999998888753 2345667888 78999999999998
No 216
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=97.28 E-value=0.00025 Score=77.68 Aligned_cols=102 Identities=18% Similarity=0.133 Sum_probs=62.2
Q ss_pred hhhhhccccchHHHHHHHhh-----hhhhhccccccccch-----hhhh--------------------hh-hhHHHhhh
Q psy14927 796 VVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNL-----ETMM--------------------GT-KSAAVKAL 844 (1074)
Q Consensus 796 ~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~-----~~~~--------------------~~-~~~~~~~l 844 (1074)
+|+||||||+|+.||+.+++ .++|+....|+.+.- +... .. .......+
T Consensus 27 DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~~~~l~~~gv~~~~~~~g~~~vd~~~l 106 (257)
T PRK04176 27 DVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGMWGGGMLFNKIVVQEEADEILDEFGIRYKEVEDGLYVADSVEA 106 (257)
T ss_pred CEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCccccCccccccccchHHHHHHHHHCCCCceeecCcceeccHHHH
Confidence 49999999999999999998 788887765543210 0000 00 00011233
Q ss_pred hhhHHHHhhhCCeEEEee-eEEEec--CC-eE-EEEeC------CC---CeeEEEcCeEEEccCCCC
Q psy14927 845 TGGIAHLFKSNKVTQLNG-HGKITG--PN-TV-TVIKS------DG---STEEVKTKNILIATGSEV 897 (1074)
Q Consensus 845 ~~~~~~~l~~~gV~~~~g-~v~~id--~~-~~-~v~~~------~G---~~~~i~~d~lIIATG~~p 897 (1074)
...+.+...+.|++++.+ +|+.+. ++ .+ -+... +| +..++.++.||+|||...
T Consensus 107 ~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a 173 (257)
T PRK04176 107 AAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDA 173 (257)
T ss_pred HHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCc
Confidence 444666667789999998 455542 22 11 11111 11 235799999999999753
No 217
>KOG0547|consensus
Probab=97.26 E-value=0.02 Score=65.25 Aligned_cols=331 Identities=18% Similarity=0.145 Sum_probs=160.8
Q ss_pred hhcCCHHHHHHHHHHcCcccchh-------hhHh--hhcHHHHHHHhhc-----CCChHHHHHHHHHHHhccCHHHHHHH
Q psy14927 7 MKNGDIDRAIRMFEKAETHQQHV-------PRML--LENTDKLEKYIIQ-----SKDPVLLKWWAQYIESTEDMDLAMKY 72 (1074)
Q Consensus 7 ~~~g~~~eA~~~Ye~~~~~~~~~-------~~~~--~~~~~~~~~~~~~-----~~~~~l~~~~a~~~e~~~~~~~A~~~ 72 (1074)
-.+|+|++||++|.++-..+..= ...| +++|.++.+...+ ++-.+-+...|...|..|++.+|+.
T Consensus 126 f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~~eal~- 204 (606)
T KOG0547|consen 126 FRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLGKFDEALF- 204 (606)
T ss_pred hhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccHHHHHH-
Confidence 35789999999999987655441 2223 4789888887776 3444566667889999999999872
Q ss_pred HHHhhChhhhhhHhhccCCHH------HHHHHHHhc--------------CChHHHHHHHHHHHh-----------cC--
Q psy14927 73 YEEARDYLSMVRVLCFLQDFS------RAAELANAS--------------GDTAAAYHLARQYEN-----------SG-- 119 (1074)
Q Consensus 73 y~~a~d~~~~vr~l~~~~~~~------~a~~i~~~~--------------~~~~~~~~la~~~~~-----------~g-- 119 (1074)
| +-++|.++.++ .++++.++. .-..++..++.||-. .+
T Consensus 205 -----D----~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~k 275 (606)
T KOG0547|consen 205 -----D----VTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDK 275 (606)
T ss_pred -----h----hhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCcc
Confidence 1 12233333322 223332211 122456667766651 11
Q ss_pred ---ChHHHHHHHHHh--CChHHHHHHHHHhCchHHH-------------HHHhhhcCchhHHHHHHHHcc-CChhHHHHH
Q psy14927 120 ---QFDEAIHFYSVA--GSCGNAVRLCKEQALDDQL-------------WNLALSAGPSEQIEAATYLET-IEPDKAVLL 180 (1074)
Q Consensus 120 ---~~~~Ai~~y~~a--~~~~~A~~la~~~~~~~~~-------------~~l~~~~~~~~~~~~A~~~e~-~~~~~A~~l 180 (1074)
...++.+.+-.. ..|..|.+.|.+-..+.+- +..++..+-.-.+-.+.++.. .++++||+|
T Consensus 276 sDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l 355 (606)
T KOG0547|consen 276 SDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKL 355 (606)
T ss_pred chhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhc
Confidence 124555544433 2467777777665322211 111111111111112222233 235666665
Q ss_pred HHHhCC-hHHHHHHHHhhc----------------cCCcchHHHHHHHHHHhc-----CCChhhHHHhhhhcchHHHHHH
Q psy14927 181 YHKAGA-LHKALDLAFKLT----------------LSNSGLVFQIKAMKCLLK-----SGDTNKIIFFAGVSRMKEIYVM 238 (1074)
Q Consensus 181 y~kaG~-~~kAl~l~~~~~----------------~~~~~~~~~~~a~k~l~~-----~~~~~~~i~~a~~~r~~~l~~~ 238 (1074)
..+-.+ |-+=.-++.+.. ..++.+||+=.=|+.|+. ..|.+|+|.+.-..--+-+---
T Consensus 356 ~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~ 435 (606)
T KOG0547|consen 356 DPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLC 435 (606)
T ss_pred CcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHH
Confidence 544444 111111111111 122345554444444432 2233333322211111111001
Q ss_pred HHHHHhc-------------CCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHhHHHHhhcCHHH-------------H
Q psy14927 239 AANYLQS-------------SDWKSQPELLKSIISFYSKGKAPHLLANFYVSCAQVEIDEFGNYEK-------------G 292 (1074)
Q Consensus 239 aa~yl~~-------------~~~~~~~~~~~~i~~~Y~k~~~~~~aa~~~~~~a~~ei~e~~~y~~-------------a 292 (1074)
.+.|=++ .-...-|..+....+..+--++|++|.+.|+.+-.+|=.+.+-|-. |
T Consensus 436 ~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qw 515 (606)
T KOG0547|consen 436 CALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQW 515 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhch
Confidence 1111111 1234456666777777778888888888888887776332222211 2
Q ss_pred HHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHHHHHhhcCChHHHhhHHHHHHHHHhhcc
Q psy14927 293 LGALNEAKRCLLKHND-SMYETLKSSVVEKLAEVEIDEFGNYEKGLGALNEAKRCLLKHN 351 (1074)
Q Consensus 293 ~~~l~~a~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 351 (1074)
..=+..|.+.|.++-. ..+.++--. .+.-+.+. +|+.+.||.|..++++.++.-.
T Consensus 516 k~d~~~a~~Ll~KA~e~Dpkce~A~~---tlaq~~lQ-~~~i~eAielFEksa~lArt~~ 571 (606)
T KOG0547|consen 516 KEDINQAENLLRKAIELDPKCEQAYE---TLAQFELQ-RGKIDEAIELFEKSAQLARTES 571 (606)
T ss_pred hhhHHHHHHHHHHHHccCchHHHHHH---HHHHHHHH-HhhHHHHHHHHHHHHHHHHhHH
Confidence 2223344444444311 222121110 12445556 7999999999999999876654
No 218
>PRK08163 salicylate hydroxylase; Provisional
Probab=97.25 E-value=0.0016 Score=76.39 Aligned_cols=54 Identities=24% Similarity=0.398 Sum_probs=40.2
Q ss_pred HHHHHHHHHHhC-CCEEEeCceEEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccCCc
Q psy14927 950 VAKQFQRILGKQ-GMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRR 1009 (1074)
Q Consensus 950 ~~~~~~~~l~~~-gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~ 1009 (1074)
+.+.+.+.+.+. +|+++.++.++++..+++++.+++.+ +.++.+|.||.|.|..
T Consensus 111 l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~------g~~~~ad~vV~AdG~~ 165 (396)
T PRK08163 111 IHLSLLEAVLDHPLVEFRTSTHVVGIEQDGDGVTVFDQQ------GNRWTGDALIGCDGVK 165 (396)
T ss_pred HHHHHHHHHHhcCCcEEEeCCEEEEEecCCCceEEEEcC------CCEEecCEEEECCCcC
Confidence 344555666555 59999999999998766666666544 3579999999999864
No 219
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=97.24 E-value=0.0068 Score=64.26 Aligned_cols=123 Identities=19% Similarity=0.253 Sum_probs=56.2
Q ss_pred hhhcCCHHHHHHHHHHcCcccchhhhH-------h--hhcHHHHHHHhhc-----CCChHHHHHHHHHHHhccCHHHHHH
Q psy14927 6 TMKNGDIDRAIRMFEKAETHQQHVPRM-------L--LENTDKLEKYIIQ-----SKDPVLLKWWAQYIESTEDMDLAMK 71 (1074)
Q Consensus 6 ~~~~g~~~eA~~~Ye~~~~~~~~~~~~-------~--~~~~~~~~~~~~~-----~~~~~l~~~~a~~~e~~~~~~~A~~ 71 (1074)
+...|++++|+..|+++-..+...+.. + .++++.+..+..+ +.++..+..++..+...|++++|.+
T Consensus 41 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~ 120 (234)
T TIGR02521 41 YLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQ 120 (234)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHH
Confidence 446778888888887764332111111 1 1233333333322 2334445555555555555555555
Q ss_pred HHHHhhC----------hhhhhhHhhccCCHHHHHHHHHh-----cCChHHHHHHHHHHHhcCChHHHHHHH
Q psy14927 72 YYEEARD----------YLSMVRVLCFLQDFSRAAELANA-----SGDTAAAYHLARQYENSGQFDEAIHFY 128 (1074)
Q Consensus 72 ~y~~a~d----------~~~~vr~l~~~~~~~~a~~i~~~-----~~~~~~~~~la~~~~~~g~~~~Ai~~y 128 (1074)
+|.++-+ +..+..++...|++++|.+...+ +.+......+|..+...|++++|+++|
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 192 (234)
T TIGR02521 121 QFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYL 192 (234)
T ss_pred HHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHH
Confidence 5555422 11223334444555555444331 122334444455555555555554443
No 220
>PRK06184 hypothetical protein; Provisional
Probab=97.23 E-value=0.0026 Score=77.23 Aligned_cols=57 Identities=19% Similarity=0.402 Sum_probs=44.7
Q ss_pred HHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccCCc
Q psy14927 950 VAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRR 1009 (1074)
Q Consensus 950 ~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~ 1009 (1074)
+.+.+.+.+.+.||++++++++++++.+++++.+++.+ .+.+.++.+|.||.|.|..
T Consensus 111 le~~L~~~l~~~gv~i~~~~~v~~i~~~~~~v~v~~~~---~~~~~~i~a~~vVgADG~~ 167 (502)
T PRK06184 111 TERILRERLAELGHRVEFGCELVGFEQDADGVTARVAG---PAGEETVRARYLVGADGGR 167 (502)
T ss_pred HHHHHHHHHHHCCCEEEeCcEEEEEEEcCCcEEEEEEe---CCCeEEEEeCEEEECCCCc
Confidence 44566677788899999999999999877777777654 2335689999999998854
No 221
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=97.22 E-value=0.0026 Score=78.83 Aligned_cols=34 Identities=21% Similarity=0.339 Sum_probs=26.2
Q ss_pred CCCCCEEEecccCC-C--------CCcHHHHHHHHHHHHHHhh
Q psy14927 1038 TVIPNIFAIGDCIH-G--------PMLAHKAEDEGIVCVEGIA 1071 (1074)
Q Consensus 1038 ts~~~IyAiGD~~~-~--------~~~~~~A~~~G~~aA~~I~ 1071 (1074)
|++||+||+|+|+. + ......|+-.|++|+.+++
T Consensus 421 t~IpGLYAaGE~a~~g~hGanRlggnsL~~a~vfGr~Ag~~aa 463 (635)
T PLN00128 421 AVVPGLMAAGEAACASVHGANRLGANSLLDIVVFGRACANRVA 463 (635)
T ss_pred CccCceEeeeccccccCCCCCCCchhhHHHHHHHHHHHHHHHH
Confidence 68999999999974 2 1245677888888888875
No 222
>KOG2076|consensus
Probab=97.22 E-value=0.026 Score=68.75 Aligned_cols=263 Identities=19% Similarity=0.168 Sum_probs=152.8
Q ss_pred hhhcCCHHHHHHHHHHcCcccchhhhHh--hh-------cH------HHHHHHhhcCCChHHHHHHHHHHHhccCHHHHH
Q psy14927 6 TMKNGDIDRAIRMFEKAETHQQHVPRML--LE-------NT------DKLEKYIIQSKDPVLLKWWAQYIESTEDMDLAM 70 (1074)
Q Consensus 6 ~~~~g~~~eA~~~Ye~~~~~~~~~~~~~--~~-------~~------~~~~~~~~~~~~~~l~~~~a~~~e~~~~~~~A~ 70 (1074)
|-..|++++|.++....=+.+..++.-| ++ +- ..+..-+. ++++.+|..||+..++.|+++.|.
T Consensus 149 lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~ 227 (895)
T KOG2076|consen 149 LFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQAR 227 (895)
T ss_pred HHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHH
Confidence 4557999999999988877766654444 11 11 11111111 567799999999999999999999
Q ss_pred HHHHHhhC-----hhhhh---hHhhccCCHHHHHHHHH----hcC------ChHHHHHHHHHHHhcCChHHHHHHHHHhC
Q psy14927 71 KYYEEARD-----YLSMV---RVLCFLQDFSRAAELAN----ASG------DTAAAYHLARQYENSGQFDEAIHFYSVAG 132 (1074)
Q Consensus 71 ~~y~~a~d-----~~~~v---r~l~~~~~~~~a~~i~~----~~~------~~~~~~~la~~~~~~g~~~~Ai~~y~~a~ 132 (1074)
-||.+|=. |.... -+|.++|+..+|.+--. -.+ -.+..+.++++|...++-+.|++.+
T Consensus 228 ~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~l---- 303 (895)
T KOG2076|consen 228 YCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKAL---- 303 (895)
T ss_pred HHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHH----
Confidence 99988633 32222 23556676666644222 111 1134445566666666555555432
Q ss_pred ChHHHHHHHHHhCchHHHHHHhhhcCchhHHHHHHHHccCChhHHHHHHHHhCChHHHHHHHHhhcc----CCc------
Q psy14927 133 SCGNAVRLCKEQALDDQLWNLALSAGPSEQIEAATYLETIEPDKAVLLYHKAGALHKALDLAFKLTL----SNS------ 202 (1074)
Q Consensus 133 ~~~~A~~la~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~~~~~~A~~ly~kaG~~~kAl~l~~~~~~----~~~------ 202 (1074)
+.|+. +.. ...+- -+..-.+.+|++-.++.+|+.......- .|+
T Consensus 304 --e~~~s--~~~----------~~~~~------------ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~ 357 (895)
T KOG2076|consen 304 --EGALS--KEK----------DEASL------------EDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTD 357 (895)
T ss_pred --HHHHh--hcc----------ccccc------------cHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhh
Confidence 12221 000 00111 1233455566666666666555443210 000
Q ss_pred ---------------chHH--HH-HHHHHHhc---------------------CCChhhHHHhhhhcchHHHHHHHHHHH
Q psy14927 203 ---------------GLVF--QI-KAMKCLLK---------------------SGDTNKIIFFAGVSRMKEIYVMAANYL 243 (1074)
Q Consensus 203 ---------------~~~~--~~-~a~k~l~~---------------------~~~~~~~i~~a~~~r~~~l~~~aa~yl 243 (1074)
++-+ .+ +=|=||.. +.+++...++|..+.+.+-|..|.+||
T Consensus 358 ~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l 437 (895)
T KOG2076|consen 358 ERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLL 437 (895)
T ss_pred hhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHH
Confidence 0001 11 22333311 334566777777777777788888888
Q ss_pred hcC---CCCCChhHHHHHHHHHHccCCHHHHHHHHHHH--------------HhHHHHhhcCHHHHHHHHHHHH
Q psy14927 244 QSS---DWKSQPELLKSIISFYSKGKAPHLLANFYVSC--------------AQVEIDEFGNYEKGLGALNEAK 300 (1074)
Q Consensus 244 ~~~---~~~~~~~~~~~i~~~Y~k~~~~~~aa~~~~~~--------------a~~ei~e~~~y~~a~~~l~~a~ 300 (1074)
--+ ....+.-...++.+||+..+.|++|.-||.++ |..- +.-||.++|...|...+
T Consensus 438 ~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~-~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 438 SPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLY-QQLGNHEKALETLEQII 510 (895)
T ss_pred HHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHH-HhcCCHHHHHHHHhccc
Confidence 653 22223457778899999999999999999887 4455 67888888877766544
No 223
>PRK07395 L-aspartate oxidase; Provisional
Probab=97.21 E-value=0.0016 Score=79.52 Aligned_cols=44 Identities=20% Similarity=0.181 Sum_probs=32.7
Q ss_pred CCCeeeCCCCCCCCCCEEEecccCC-C--------CCcHHHHHHHHHHHHHHh
Q psy14927 1027 KGRVPVNSRFQTVIPNIFAIGDCIH-G--------PMLAHKAEDEGIVCVEGI 1070 (1074)
Q Consensus 1027 ~G~I~Vd~~~~ts~~~IyAiGD~~~-~--------~~~~~~A~~~G~~aA~~I 1070 (1074)
-|.|.||.+.+|++||+||+|+|+. + ......++--|+.++.++
T Consensus 347 ~GGi~vd~~~~t~I~GLyAaGE~a~~G~hGanRL~gnsl~e~lvfG~~a~~~~ 399 (553)
T PRK07395 347 MGGVVTDLNNQTSIPGLYAVGETASTGVHGANRLASNSLLECLVFAAQLAQLE 399 (553)
T ss_pred CCCeeECCCCcccCCCEEECccccccCCCcccchHHHHHHHHHHHHHHHHHHH
Confidence 3778999999999999999999864 2 112345566677777776
No 224
>KOG1585|consensus
Probab=97.21 E-value=0.04 Score=57.57 Aligned_cols=167 Identities=20% Similarity=0.208 Sum_probs=86.1
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHhhChhhhhhHhhccCCHHHHHHHHHhcCChHHHHHHHHHHHhcCChHHHHHHHHHh
Q psy14927 52 LLKWWAQYIESTEDMDLAMKYYEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAAYHLARQYENSGQFDEAIHFYSVA 131 (1074)
Q Consensus 52 l~~~~a~~~e~~~~~~~A~~~y~~a~d~~~~vr~l~~~~~~~~a~~i~~~~~~~~~~~~la~~~~~~g~~~~Ai~~y~~a 131 (1074)
+.+|=+.|.-..+.|+.|+-+|..|++|+..-.+|.+ |.+-. .+..+.+|-|+.||
T Consensus 20 ~~~wkad~dgaas~yekAAvafRnAk~feKakdcLlk------A~~~y---EnnrslfhAAKayE--------------- 75 (308)
T KOG1585|consen 20 LTRWKADWDGAASLYEKAAVAFRNAKKFEKAKDCLLK------ASKGY---ENNRSLFHAAKAYE--------------- 75 (308)
T ss_pred hhccCCCchhhHHHHHHHHHHHHhhccHHHHHHHHHH------HHHHH---HhcccHHHHHHHHH---------------
Confidence 3346688888888999999999999999765554322 22211 12233455555554
Q ss_pred CChHHHHHHHHHhCchHHHHHHhhhcCchhHHHHHHHHccCChhHHHHHHHHhCChHHHHHHHHhhccCCcchHHHHHHH
Q psy14927 132 GSCGNAVRLCKEQALDDQLWNLALSAGPSEQIEAATYLETIEPDKAVLLYHKAGALHKALDLAFKLTLSNSGLVFQIKAM 211 (1074)
Q Consensus 132 ~~~~~A~~la~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~~~~~~A~~ly~kaG~~~kAl~l~~~~~~~~~~~~~~~~a~ 211 (1074)
+|.-|+++...+.+.+++. ++|..+|..+|.+.-|...+-+. .
T Consensus 76 ----qaamLake~~klsEvvdl~--------------------eKAs~lY~E~GspdtAAmaleKA-------------a 118 (308)
T KOG1585|consen 76 ----QAAMLAKELSKLSEVVDLY--------------------EKASELYVECGSPDTAAMALEKA-------------A 118 (308)
T ss_pred ----HHHHHHHHHHHhHHHHHHH--------------------HHHHHHHHHhCCcchHHHHHHHH-------------H
Confidence 3333444433333332222 44555555555555554444431 1
Q ss_pred HHHhcCCChhhHHHhhhhcchHHHHHHHHHHHhcCCC-CCChhHHHHHHHHHHccCCHHHHHHHHHHH--HhHHHHhhcC
Q psy14927 212 KCLLKSGDTNKIIFFAGVSRMKEIYVMAANYLQSSDW-KSQPELLKSIISFYSKGKAPHLLANFYVSC--AQVEIDEFGN 288 (1074)
Q Consensus 212 k~l~~~~~~~~~i~~a~~~r~~~l~~~aa~yl~~~~~-~~~~~~~~~i~~~Y~k~~~~~~aa~~~~~~--a~~ei~e~~~ 288 (1074)
| ++++-+.+++++ ||..+.+.++..+- +-.-+.+....+.|.+.+.|.+++.++-+- +..+++.|+.
T Consensus 119 k-~lenv~Pd~Alq---------lYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~ 188 (308)
T KOG1585|consen 119 K-ALENVKPDDALQ---------LYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNS 188 (308)
T ss_pred H-HhhcCCHHHHHH---------HHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhccc
Confidence 1 223334444433 24455555544321 111244445566666777777777665443 4555566665
Q ss_pred H
Q psy14927 289 Y 289 (1074)
Q Consensus 289 y 289 (1074)
-
T Consensus 189 ~ 189 (308)
T KOG1585|consen 189 Q 189 (308)
T ss_pred H
Confidence 4
No 225
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=97.18 E-value=0.00059 Score=80.12 Aligned_cols=90 Identities=10% Similarity=0.035 Sum_probs=63.7
Q ss_pred hhhhhccccchHHHHHHHhh-----hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEee-eEEEecC
Q psy14927 796 VVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNG-HGKITGP 869 (1074)
Q Consensus 796 ~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g-~v~~id~ 869 (1074)
+|+|||||+.|+.+|..+++ ++++..+...... ....+...+.+.+.+.||+++.+ .++.++.
T Consensus 146 ~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~-----------~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~ 214 (396)
T PRK09754 146 SVVIVGAGTIGLELAASATQRRCKVTVIELAATVMGRN-----------APPPVQRYLLQRHQQAGVRILLNNAIEHVVD 214 (396)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchhhh-----------cCHHHHHHHHHHHHHCCCEEEeCCeeEEEEc
Confidence 49999999999999999987 4555444321110 01223334566677889999998 5666653
Q ss_pred -CeEEEEeCCCCeeEEEcCeEEEccCCCCC
Q psy14927 870 -NTVTVIKSDGSTEEVKTKNILIATGSEVT 898 (1074)
Q Consensus 870 -~~~~v~~~~G~~~~i~~d~lIIATG~~p~ 898 (1074)
+...+.+.+| .++.+|.||+|+|.+|.
T Consensus 215 ~~~~~v~l~~g--~~i~aD~Vv~a~G~~pn 242 (396)
T PRK09754 215 GEKVELTLQSG--ETLQADVVIYGIGISAN 242 (396)
T ss_pred CCEEEEEECCC--CEEECCEEEECCCCChh
Confidence 3456677787 57999999999999984
No 226
>PRK07588 hypothetical protein; Provisional
Probab=97.16 E-value=0.0019 Score=75.83 Aligned_cols=43 Identities=14% Similarity=0.184 Sum_probs=35.2
Q ss_pred CCCEEEeCceEEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccCCc
Q psy14927 961 QGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRR 1009 (1074)
Q Consensus 961 ~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~ 1009 (1074)
.||++++++++++++.+++++.|++.+ ++++.+|.||-|.|..
T Consensus 115 ~~v~i~~~~~v~~i~~~~~~v~v~~~~------g~~~~~d~vIgADG~~ 157 (391)
T PRK07588 115 GQVETIFDDSIATIDEHRDGVRVTFER------GTPRDFDLVIGADGLH 157 (391)
T ss_pred cCeEEEeCCEEeEEEECCCeEEEEECC------CCEEEeCEEEECCCCC
Confidence 379999999999999877777777665 3567899999998864
No 227
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=97.14 E-value=0.00073 Score=77.62 Aligned_cols=99 Identities=18% Similarity=0.235 Sum_probs=68.5
Q ss_pred hhhhhhccccchHHHHHHHhh---hhhhh--ccccccccc----hhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEee-eE
Q psy14927 795 QVVLNTLGNCAAVQANYHLAT---KLFTQ--AGDKGVKLN----LETMMGTKSAAVKALTGGIAHLFKSNKVTQLNG-HG 864 (1074)
Q Consensus 795 ~~VviiGgG~AGl~aA~~la~---~l~e~--~~~~g~~~~----~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g-~v 864 (1074)
.+|+|+||||.|.+.|-+|+. .++.. .+.....+. .+.+.+. +..++..+..+.|.+.||+++++ .|
T Consensus 156 lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~ILp~---~~~~l~~~a~~~L~~~GV~v~l~~~V 232 (405)
T COG1252 156 LTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRILPM---FPPKLSKYAERALEKLGVEVLLGTPV 232 (405)
T ss_pred eEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhccC---CCHHHHHHHHHHHHHCCCEEEcCCce
Confidence 349999999999999999998 22221 111111111 1222222 23566667888999999999999 58
Q ss_pred EEecCCeEEEEeCCCCeeEEEcCeEEEccCCCCCC
Q psy14927 865 KITGPNTVTVIKSDGSTEEVKTKNILIATGSEVTP 899 (1074)
Q Consensus 865 ~~id~~~~~v~~~~G~~~~i~~d~lIIATG~~p~~ 899 (1074)
+.++++.+++ ++|+. ++.++.+|.|+|.++++
T Consensus 233 t~v~~~~v~~--~~g~~-~I~~~tvvWaaGv~a~~ 264 (405)
T COG1252 233 TEVTPDGVTL--KDGEE-EIPADTVVWAAGVRASP 264 (405)
T ss_pred EEECCCcEEE--ccCCe-eEecCEEEEcCCCcCCh
Confidence 8999987655 55522 69999999999999753
No 228
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=97.12 E-value=0.00079 Score=78.55 Aligned_cols=90 Identities=13% Similarity=0.134 Sum_probs=63.9
Q ss_pred hhhhhccccchHHHHHHHhh-----hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEee-eEEEecC
Q psy14927 796 VVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNG-HGKITGP 869 (1074)
Q Consensus 796 ~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g-~v~~id~ 869 (1074)
+|+|||||+.|+.+|..|++ ++++..+..... . ....+...+.+.+++.||+++.+ .++.++.
T Consensus 143 ~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~~-----~------~~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~ 211 (377)
T PRK04965 143 RVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLAS-----L------MPPEVSSRLQHRLTEMGVHLLLKSQLQGLEK 211 (377)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcccch-----h------CCHHHHHHHHHHHHhCCCEEEECCeEEEEEc
Confidence 39999999999999999987 455544332111 0 01223344566778889999988 5776654
Q ss_pred --CeEEEEeCCCCeeEEEcCeEEEccCCCCC
Q psy14927 870 --NTVTVIKSDGSTEEVKTKNILIATGSEVT 898 (1074)
Q Consensus 870 --~~~~v~~~~G~~~~i~~d~lIIATG~~p~ 898 (1074)
....+.+.+| .++.+|.||+|+|..|.
T Consensus 212 ~~~~~~v~~~~g--~~i~~D~vI~a~G~~p~ 240 (377)
T PRK04965 212 TDSGIRATLDSG--RSIEVDAVIAAAGLRPN 240 (377)
T ss_pred cCCEEEEEEcCC--cEEECCEEEECcCCCcc
Confidence 3456677777 68999999999999884
No 229
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=97.10 E-value=0.0047 Score=67.04 Aligned_cols=122 Identities=20% Similarity=0.186 Sum_probs=75.6
Q ss_pred CHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccCCcccCCccC--------cc
Q psy14927 947 DGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLG--------LE 1018 (1074)
Q Consensus 947 ~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~--------l~ 1018 (1074)
+-...+.+...++..|.-++.+..|...+-.+++++-..+. +.....+.+|..++|+|.--...+.. +-
T Consensus 257 GiRl~~~L~~~f~~~Gg~~m~Gd~V~~a~~~~~~v~~i~tr---n~~diP~~a~~~VLAsGsffskGLvae~d~I~EPIf 333 (421)
T COG3075 257 GIRLHNQLQRQFEQLGGLWMPGDEVKKATCKGGRVTEIYTR---NHADIPLRADFYVLASGSFFSKGLVAERDKIYEPIF 333 (421)
T ss_pred hhhHHHHHHHHHHHcCceEecCCceeeeeeeCCeEEEEEec---ccccCCCChhHeeeeccccccccchhhhhhhhcchh
Confidence 34567778889999999999999999988776665433332 24456788999999998532111100 00
Q ss_pred ccCcc-------cCCC----------CCeeeCCCCCCC-----CCCEEEecccCCCCCc------HHHHHHHHHHHHHHh
Q psy14927 1019 EIGIE-------KDEK----------GRVPVNSRFQTV-----IPNIFAIGDCIHGPML------AHKAEDEGIVCVEGI 1070 (1074)
Q Consensus 1019 ~~gl~-------ld~~----------G~I~Vd~~~~ts-----~~~IyAiGD~~~~~~~------~~~A~~~G~~aA~~I 1070 (1074)
.+.+. +... =.|.+|++++.+ +.|+|+||-+.++... .-+|+..|..||..|
T Consensus 334 ~ldi~~~~dR~~W~~~~ffapqp~~qfGV~tD~~lrp~~~g~~~eNL~aiGavlgGfdpi~egcGsGVaivta~~aa~qi 413 (421)
T COG3075 334 DLDILQTADRAEWYHSDFFAPQPYQQFGVTTDDTLRPSRGGQTIENLYAIGAVLGGFDPIAEGCGSGVAIVTALHAAEQI 413 (421)
T ss_pred hcccccCcchhhhhhccccCCChhHHhCcccccccCccccchHHHHHHHHHHHhcCCcHHHhcCCcchHHHHHHHHHHHH
Confidence 11111 1111 126778887753 5789999999886321 234556666666666
Q ss_pred h
Q psy14927 1071 A 1071 (1074)
Q Consensus 1071 ~ 1071 (1074)
+
T Consensus 414 ~ 414 (421)
T COG3075 414 A 414 (421)
T ss_pred H
Confidence 5
No 230
>PRK09897 hypothetical protein; Provisional
Probab=97.10 E-value=0.0011 Score=79.77 Aligned_cols=30 Identities=17% Similarity=0.251 Sum_probs=25.9
Q ss_pred hhhhhccccchHHHHHHHhh-------hhhhhccccc
Q psy14927 796 VVLNTLGNCAAVQANYHLAT-------KLFTQAGDKG 825 (1074)
Q Consensus 796 ~VviiGgG~AGl~aA~~la~-------~l~e~~~~~g 825 (1074)
+|+||||||+|+.+|..|.+ ++||+....|
T Consensus 3 ~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G 39 (534)
T PRK09897 3 KIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAG 39 (534)
T ss_pred eEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCC
Confidence 49999999999999999976 7888866555
No 231
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=97.10 E-value=0.0038 Score=71.71 Aligned_cols=58 Identities=19% Similarity=0.359 Sum_probs=44.5
Q ss_pred CHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEE-EEEeeccCCCCceEEEcCEEEEccCCccc
Q psy14927 947 DGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNIT-VTIENVKDPTKKEELSCDALLVCVGRRPY 1011 (1074)
Q Consensus 947 ~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~-v~~~~~~~~g~~~~i~~D~vi~a~G~~p~ 1011 (1074)
+..+...+.+.+++.|++++.+++|+++..+++.+. |.+.+ +. +.+|.||+|+|....
T Consensus 146 ~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~gv~~~~------g~-i~ad~vV~a~G~~s~ 204 (358)
T PF01266_consen 146 PRRLIQALAAEAQRAGVEIRTGTEVTSIDVDGGRVTGVRTSD------GE-IRADRVVLAAGAWSP 204 (358)
T ss_dssp HHHHHHHHHHHHHHTT-EEEESEEEEEEEEETTEEEEEEETT------EE-EEECEEEE--GGGHH
T ss_pred ccchhhhhHHHHHHhhhhccccccccchhhcccccccccccc------cc-cccceeEecccccce
Confidence 456778888888999999999999999998877765 66544 44 999999999997543
No 232
>PRK06126 hypothetical protein; Provisional
Probab=97.09 E-value=0.005 Score=75.60 Aligned_cols=59 Identities=20% Similarity=0.402 Sum_probs=44.8
Q ss_pred HHHHHHHHHHh-CCCEEEeCceEEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccCCc
Q psy14927 950 VAKQFQRILGK-QGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRR 1009 (1074)
Q Consensus 950 ~~~~~~~~l~~-~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~ 1009 (1074)
+...+.+.+.+ .||+++++++++++..+++++.+++.+.. +|+..++.+|.||.|.|..
T Consensus 128 l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~~~-~g~~~~i~ad~vVgADG~~ 187 (545)
T PRK06126 128 LEPILLEHAAAQPGVTLRYGHRLTDFEQDADGVTATVEDLD-GGESLTIRADYLVGCDGAR 187 (545)
T ss_pred HHHHHHHHHHhCCCceEEeccEEEEEEECCCeEEEEEEECC-CCcEEEEEEEEEEecCCcc
Confidence 44455566554 58999999999999987777777776533 4555689999999998865
No 233
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=97.09 E-value=0.00052 Score=60.70 Aligned_cols=72 Identities=15% Similarity=0.087 Sum_probs=49.9
Q ss_pred hhhhhccccchHHHHHHHhh-----hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEee-eEEEecC
Q psy14927 796 VVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNG-HGKITGP 869 (1074)
Q Consensus 796 ~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g-~v~~id~ 869 (1074)
+|+|||||+.|+..|..+++ ++++..+.....+ ..++...+.+.+++.||+++++ .++.++.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~~~~------------~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~ 68 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLLPGF------------DPDAAKILEEYLRKRGVEVHTNTKVKEIEK 68 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTS------------SHHHHHHHHHHHHHTTEEEEESEEEEEEEE
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhhhhc------------CHHHHHHHHHHHHHCCCEEEeCCEEEEEEE
Confidence 38899999999999999988 6666666543111 1333444677788889999999 4555543
Q ss_pred --CeEEEEeCCC
Q psy14927 870 --NTVTVIKSDG 879 (1074)
Q Consensus 870 --~~~~v~~~~G 879 (1074)
..++|+++||
T Consensus 69 ~~~~~~V~~~~g 80 (80)
T PF00070_consen 69 DGDGVEVTLEDG 80 (80)
T ss_dssp ETTSEEEEEETS
T ss_pred eCCEEEEEEecC
Confidence 2355666665
No 234
>KOG2003|consensus
Probab=97.08 E-value=0.016 Score=64.66 Aligned_cols=174 Identities=21% Similarity=0.201 Sum_probs=98.6
Q ss_pred HhccCHHHHHHHHHHhhCh-hhhhhHh-------hccCCHHHHHHHHH-----hcCChHHHHHHHHHHHhcCChHHHHHH
Q psy14927 61 ESTEDMDLAMKYYEEARDY-LSMVRVL-------CFLQDFSRAAELAN-----ASGDTAAAYHLARQYENSGQFDEAIHF 127 (1074)
Q Consensus 61 e~~~~~~~A~~~y~~a~d~-~~~vr~l-------~~~~~~~~a~~i~~-----~~~~~~~~~~la~~~~~~g~~~~Ai~~ 127 (1074)
...|++++|+++|..|=+- -|.+..| ..+|+.++|.+.-- --++.+..+++|.+|+...+-.+||++
T Consensus 501 f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~ 580 (840)
T KOG2003|consen 501 FANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIEL 580 (840)
T ss_pred eecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHH
Confidence 3456666666665543221 1333322 23445555544322 235677889999999999999999998
Q ss_pred HHHhCChHHHHHHHHHhCchHHHHHHhhhcCchhHHHHHHHHcc-CChhHHHHHHHHhCChHHHHHHHHhhccCCcchHH
Q psy14927 128 YSVAGSCGNAVRLCKEQALDDQLWNLALSAGPSEQIEAATYLET-IEPDKAVLLYHKAGALHKALDLAFKLTLSNSGLVF 206 (1074)
Q Consensus 128 y~~a~~~~~A~~la~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~-~~~~~A~~ly~kaG~~~kAl~l~~~~~~~~~~~~~ 206 (1074)
|..+... .+ ..|..+-+.|+.|.+ |+-.+|-+.|...=+| |
T Consensus 581 ~~q~~sl-------------------ip-~dp~ilskl~dlydqegdksqafq~~ydsyry-------f----------- 622 (840)
T KOG2003|consen 581 LMQANSL-------------------IP-NDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-------F----------- 622 (840)
T ss_pred HHHhccc-------------------CC-CCHHHHHHHHHHhhcccchhhhhhhhhhcccc-------c-----------
Confidence 8765432 12 233444456665554 4444444333321111 1
Q ss_pred HHHHHHHHhcCCChhhHHHhhhhcchHHHHHHHHHHHhcCCCCCChhHHH---HHHHHHHccCCHHHHHHHHHHHHhHHH
Q psy14927 207 QIKAMKCLLKSGDTNKIIFFAGVSRMKEIYVMAANYLQSSDWKSQPELLK---SIISFYSKGKAPHLLANFYVSCAQVEI 283 (1074)
Q Consensus 207 ~~~a~k~l~~~~~~~~~i~~a~~~r~~~l~~~aa~yl~~~~~~~~~~~~~---~i~~~Y~k~~~~~~aa~~~~~~a~~ei 283 (1074)
..+++-+.-++......+.+..+++|++.. .-..|...+ .|..| .
T Consensus 623 ----------p~nie~iewl~ayyidtqf~ekai~y~eka-aliqp~~~kwqlmiasc---------------------~ 670 (840)
T KOG2003|consen 623 ----------PCNIETIEWLAAYYIDTQFSEKAINYFEKA-ALIQPNQSKWQLMIASC---------------------F 670 (840)
T ss_pred ----------CcchHHHHHHHHHHHhhHHHHHHHHHHHHH-HhcCccHHHHHHHHHHH---------------------H
Confidence 234555666666777778888899998874 112222222 22333 3
Q ss_pred HhhcCHHHHHHHHHHHHHHHH
Q psy14927 284 DEFGNYEKGLGALNEAKRCLL 304 (1074)
Q Consensus 284 ~e~~~y~~a~~~l~~a~~~l~ 304 (1074)
..-|||.+|.+.+....+.+.
T Consensus 671 rrsgnyqka~d~yk~~hrkfp 691 (840)
T KOG2003|consen 671 RRSGNYQKAFDLYKDIHRKFP 691 (840)
T ss_pred HhcccHHHHHHHHHHHHHhCc
Confidence 566888888888887776554
No 235
>KOG1586|consensus
Probab=97.06 E-value=0.015 Score=60.24 Aligned_cols=107 Identities=16% Similarity=0.222 Sum_probs=73.9
Q ss_pred HHHHHHHHhcCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHhHHHHhhcCHHHHHHHHHHHHHHHHhcCCCchHHHH
Q psy14927 236 YVMAANYLQSSDWKSQPELLKSIISFYSKGKAPHLLANFYVSCAQVEIDEFGNYEKGLGALNEAKRCLLKHNDSMYETLK 315 (1074)
Q Consensus 236 ~~~aa~yl~~~~~~~~~~~~~~i~~~Y~k~~~~~~aa~~~~~~a~~ei~e~~~y~~a~~~l~~a~~~l~~~~~~~~~~~~ 315 (1074)
|+-|++-....++..-.+-+.+.++.||..|+|..+|+++..+|..-=.+..|+++|.+.+..|-..+........ .
T Consensus 77 YveA~~cykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ss---A 153 (288)
T KOG1586|consen 77 YVEAANCYKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSS---A 153 (288)
T ss_pred HHHHHHHhhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhh---H
Confidence 4455555555444444455566789999999999999999999987536779999999999999888875332111 0
Q ss_pred HHHHHHHHHHHHhhcCChHHHhhHHHHHHHH
Q psy14927 316 SSVVEKLAEVEIDEFGNYEKGLGALNEAKRC 346 (1074)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 346 (1074)
+.-+ +.+--|-.+.++|.+||+.|..++.+
T Consensus 154 NKC~-lKvA~yaa~leqY~~Ai~iyeqva~~ 183 (288)
T KOG1586|consen 154 NKCL-LKVAQYAAQLEQYSKAIDIYEQVARS 183 (288)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 12223334459999999999999886
No 236
>KOG0276|consensus
Probab=97.06 E-value=0.0088 Score=69.33 Aligned_cols=146 Identities=15% Similarity=0.113 Sum_probs=117.8
Q ss_pred cHHHHHHHhhcCCChHHHHHHHHHHHhccCHHHHHHHHHHhhChhhhhhHhhccCCHHHHHHHHHhcCChHHHHHHHHHH
Q psy14927 36 NTDKLEKYIIQSKDPVLLKWWAQYIESTEDMDLAMKYYEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAAYHLARQY 115 (1074)
Q Consensus 36 ~~~~~~~~~~~~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~~~~vr~l~~~~~~~~a~~i~~~~~~~~~~~~la~~~ 115 (1074)
+++.+...++... +..+...|.++|++|-.++|++ -+.|-+.--.+...+|+.+.|.+++.+..+..-...|++.+
T Consensus 601 d~~~a~~vLp~I~-k~~rt~va~Fle~~g~~e~AL~---~s~D~d~rFelal~lgrl~iA~~la~e~~s~~Kw~~Lg~~a 676 (794)
T KOG0276|consen 601 DLEVADGVLPTIP-KEIRTKVAHFLESQGMKEQALE---LSTDPDQRFELALKLGRLDIAFDLAVEANSEVKWRQLGDAA 676 (794)
T ss_pred cccccccccccCc-hhhhhhHHhHhhhccchHhhhh---cCCChhhhhhhhhhcCcHHHHHHHHHhhcchHHHHHHHHHH
Confidence 4445555555555 6678889999999999999985 47787777888999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHhCChHHHHHHHHHhCchHHHHHHhhhcCchhHHHHHHHHcc-CChhHHHHHHHHhCChHHHHHHH
Q psy14927 116 ENSGQFDEAIHFYSVAGSCGNAVRLCKEQALDDQLWNLALSAGPSEQIEAATYLET-IEPDKAVLLYHKAGALHKALDLA 194 (1074)
Q Consensus 116 ~~~g~~~~Ai~~y~~a~~~~~A~~la~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~-~~~~~A~~ly~kaG~~~kAl~l~ 194 (1074)
.+.|++.-|.+.|.+++.|..-+-|.-..|.. +.+..+|.-=++ +..--|-..|.+.|+++.+++++
T Consensus 677 l~~~~l~lA~EC~~~a~d~~~LlLl~t~~g~~------------~~l~~la~~~~~~g~~N~AF~~~~l~g~~~~C~~lL 744 (794)
T KOG0276|consen 677 LSAGELPLASECFLRARDLGSLLLLYTSSGNA------------EGLAVLASLAKKQGKNNLAFLAYFLSGDYEECLELL 744 (794)
T ss_pred hhcccchhHHHHHHhhcchhhhhhhhhhcCCh------------hHHHHHHHHHHhhcccchHHHHHHHcCCHHHHHHHH
Confidence 99999999999999999999776554444333 333344444444 56677999999999999999999
Q ss_pred Hhh
Q psy14927 195 FKL 197 (1074)
Q Consensus 195 ~~~ 197 (1074)
.+.
T Consensus 745 i~t 747 (794)
T KOG0276|consen 745 IST 747 (794)
T ss_pred Hhc
Confidence 883
No 237
>KOG2066|consensus
Probab=97.06 E-value=0.07 Score=64.20 Aligned_cols=245 Identities=17% Similarity=0.230 Sum_probs=157.2
Q ss_pred HhhhcCCHHHHHHHHHHcCcccc-----hhhhHhhh------cHHHHHHHhhc--CCChHHHHHHHHHHHhccC------
Q psy14927 5 ETMKNGDIDRAIRMFEKAETHQQ-----HVPRMLLE------NTDKLEKYIIQ--SKDPVLLKWWAQYIESTED------ 65 (1074)
Q Consensus 5 ~~~~~g~~~eA~~~Ye~~~~~~~-----~~~~~~~~------~~~~~~~~~~~--~~~~~l~~~~a~~~e~~~~------ 65 (1074)
-|.+.++|+||..+=+...-... ++.++|++ ..+.+..+.++ ++....|.||-.....-++
T Consensus 365 Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia~ 444 (846)
T KOG2066|consen 365 WLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIAP 444 (846)
T ss_pred HHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhhc
Confidence 36788899999999888765432 45677753 56677777776 4677788887555544333
Q ss_pred -------------HHHHHHHHHHhhChhhhhhHhhccCCHHHH-----------HHHHHhcCChHHHHHHHHHHHhcCCh
Q psy14927 66 -------------MDLAMKYYEEARDYLSMVRVLCFLQDFSRA-----------AELANASGDTAAAYHLARQYENSGQF 121 (1074)
Q Consensus 66 -------------~~~A~~~y~~a~d~~~~vr~l~~~~~~~~a-----------~~i~~~~~~~~~~~~la~~~~~~g~~ 121 (1074)
|+..+-.|.. -|+...-.+ . ..|+... -++.+.+.+......||..|...|+|
T Consensus 445 ~lPt~~~rL~p~vYemvLve~L~-~~~~~F~e~-i-~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e~La~LYl~d~~Y 521 (846)
T KOG2066|consen 445 YLPTGPPRLKPLVYEMVLVEFLA-SDVKGFLEL-I-KEWPGHLYSVLTIISATEPQIKQNSESTALLEVLAHLYLYDNKY 521 (846)
T ss_pred cCCCCCcccCchHHHHHHHHHHH-HHHHHHHHH-H-HhCChhhhhhhHHHhhcchHHHhhccchhHHHHHHHHHHHccCh
Confidence 3344444444 222111110 0 1111111 12223345666777899999999999
Q ss_pred HHHHHHHHHhCChHHHHHHHHHhCchHHHHHHh---------------h----hcC-----------ch-hHHHHHHHHc
Q psy14927 122 DEAIHFYSVAGSCGNAVRLCKEQALDDQLWNLA---------------L----SAG-----------PS-EQIEAATYLE 170 (1074)
Q Consensus 122 ~~Ai~~y~~a~~~~~A~~la~~~~~~~~~~~l~---------------~----~~~-----------~~-~~~~~A~~~e 170 (1074)
+.|++.|.++++. ++|++-++|++.+.+.... . ..+ |. .+.-.+.++.
T Consensus 522 ~~Al~~ylklk~~-~vf~lI~k~nL~d~i~~~Iv~Lmll~skka~~lLldn~d~ip~a~Vveql~~~P~~l~~YL~kl~~ 600 (846)
T KOG2066|consen 522 EKALPIYLKLQDK-DVFDLIKKHNLFDQIKDQIVLLMLLDSKKAIDLLLDNRDSISPSEVVEQLEDNPKLLYCYLHKLFK 600 (846)
T ss_pred HHHHHHHHhccCh-HHHHHHHHHhhHHHHHHHHHHHHccchhhHHHHHhhccccCCHHHHHHHHhcChHHHHHHHHHHhh
Confidence 9999999999886 5999999999888774421 0 011 11 1111333333
Q ss_pred cC-----Ch-hHHHHHHHH--------------hCChHHHHHHHHhhccCCcchHH------HHHHHHHHhc-CCChhhH
Q psy14927 171 TI-----EP-DKAVLLYHK--------------AGALHKALDLAFKLTLSNSGLVF------QIKAMKCLLK-SGDTNKI 223 (1074)
Q Consensus 171 ~~-----~~-~~A~~ly~k--------------aG~~~kAl~l~~~~~~~~~~~~~------~~~a~k~l~~-~~~~~~~ 223 (1074)
.. .| ++.+.+|.. .=+.++|+++|.+.++.+.-+|- .-.|.+..+. .+|.++|
T Consensus 601 rd~~~~~~y~dk~I~LYAEyDrk~LLPFLr~s~~Y~lekA~eiC~q~~~~~E~VYlLgrmGn~k~AL~lII~el~die~A 680 (846)
T KOG2066|consen 601 RDHFMGSEYHDKQIELYAEYDRKKLLPFLRKSQNYNLEKALEICSQKNFYEELVYLLGRMGNAKEALKLIINELRDIEKA 680 (846)
T ss_pred cCccccchhhhHHHHHHHHHhHhhhhHHHHhcCCCCHHHHHHHHHhhCcHHHHHHHHHhhcchHHHHHHHHHHhhCHHHH
Confidence 22 23 789999875 45678999999986543221111 2466776654 8999999
Q ss_pred HHhhhhcchHHHHHHHHHHHhcCCCCCChhHHHHH
Q psy14927 224 IFFAGVSRMKEIYVMAANYLQSSDWKSQPELLKSI 258 (1074)
Q Consensus 224 i~~a~~~r~~~l~~~aa~yl~~~~~~~~~~~~~~i 258 (1074)
|+|++...+++||.-+++|-..- |+.++.+
T Consensus 681 IefvKeq~D~eLWe~LI~~~ldk-----Pe~~~~l 710 (846)
T KOG2066|consen 681 IEFVKEQDDSELWEDLINYSLDK-----PEFIKAL 710 (846)
T ss_pred HHHHHhcCCHHHHHHHHHHhhcC-----cHHHHHH
Confidence 99999999999999999998655 6666665
No 238
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=97.06 E-value=0.0012 Score=78.28 Aligned_cols=102 Identities=15% Similarity=0.166 Sum_probs=62.2
Q ss_pred chhhhhhccccchHHHHHHHhh-----hhhhhcccccc------ccc---hhhhhhhh------h---------------
Q psy14927 794 RQVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGV------KLN---LETMMGTK------S--------------- 838 (1074)
Q Consensus 794 k~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~------~~~---~~~~~~~~------~--------------- 838 (1074)
+.+|+||||||||++||+.|++ .++|+.+.++. .+. +..+.+.. .
T Consensus 5 ~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k~~~gg~l~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (428)
T PRK10157 5 IFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHSLEHIIPGFADSAPVERLITHEKLAFMTEKS 84 (428)
T ss_pred cCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCcccccceechhhHHHHhhhhhhcCcccceeeeeeEEEEcCCC
Confidence 3459999999999999999999 67877654331 110 11110000 0
Q ss_pred ----H----------------HHhhhhhhHHHHhhhCCeEEEee-eEEEec--CCeEEEEeCCCCeeEEEcCeEEEccCC
Q psy14927 839 ----A----------------AVKALTGGIAHLFKSNKVTQLNG-HGKITG--PNTVTVIKSDGSTEEVKTKNILIATGS 895 (1074)
Q Consensus 839 ----~----------------~~~~l~~~~~~~l~~~gV~~~~g-~v~~id--~~~~~v~~~~G~~~~i~~d~lIIATG~ 895 (1074)
. ....+...+.+.+.+.|++++.+ +|+.+. .+.+.+...+| .++.+|.||+|+|.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~v~R~~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~g~v~~v~~~g--~~i~A~~VI~A~G~ 162 (428)
T PRK10157 85 AMTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQRDGKVVGVEADG--DVIEAKTVILADGV 162 (428)
T ss_pred ceeeccccccccCCCCCceeeEHHHHHHHHHHHHHHCCCEEECCCEEEEEEEeCCEEEEEEcCC--cEEECCEEEEEeCC
Confidence 0 00111122445556689999999 566653 33343334455 47999999999998
Q ss_pred CC
Q psy14927 896 EV 897 (1074)
Q Consensus 896 ~p 897 (1074)
..
T Consensus 163 ~s 164 (428)
T PRK10157 163 NS 164 (428)
T ss_pred CH
Confidence 64
No 239
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.05 E-value=0.0045 Score=73.20 Aligned_cols=57 Identities=21% Similarity=0.299 Sum_probs=42.8
Q ss_pred HHHHHHHHHHh-CCCEEEeCceEEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccCCc
Q psy14927 950 VAKQFQRILGK-QGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRR 1009 (1074)
Q Consensus 950 ~~~~~~~~l~~-~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~ 1009 (1074)
+.+.+.+.+.+ .||++++++++++++.+++++.|++.+ ++.+.++.+|.||.|.|..
T Consensus 123 l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~~~~~v~~~~---~~~~~~i~adlvIgADG~~ 180 (415)
T PRK07364 123 LLEALQEFLQSCPNITWLCPAEVVSVEYQQDAATVTLEI---EGKQQTLQSKLVVAADGAR 180 (415)
T ss_pred HHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeeEEEEcc---CCcceEEeeeEEEEeCCCC
Confidence 34555566655 479999999999998877777777764 2334679999999999854
No 240
>KOG0276|consensus
Probab=97.03 E-value=0.0042 Score=71.92 Aligned_cols=110 Identities=18% Similarity=0.180 Sum_probs=92.2
Q ss_pred hhcHHHHHHHhhcCCChHHHHHHHHHHHhccCHHHHHHHHHHhhChhhhhhHhhccCCHHHHHHHHHhcCChHHHHHHH-
Q psy14927 34 LENTDKLEKYIIQSKDPVLLKWWAQYIESTEDMDLAMKYYEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAAYHLA- 112 (1074)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~~~~vr~l~~~~~~~~a~~i~~~~~~~~~~~~la- 112 (1074)
+++.+.+.++..+.+++.=|+++|+++.+.+++..|.+||.+|.||-++.-++...|+-+....++..+...+ -+.+|
T Consensus 650 lgrl~iA~~la~e~~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~~LlLl~t~~g~~~~l~~la~~~~~~g-~~N~AF 728 (794)
T KOG0276|consen 650 LGRLDIAFDLAVEANSEVKWRQLGDAALSAGELPLASECFLRARDLGSLLLLYTSSGNAEGLAVLASLAKKQG-KNNLAF 728 (794)
T ss_pred cCcHHHHHHHHHhhcchHHHHHHHHHHhhcccchhHHHHHHhhcchhhhhhhhhhcCChhHHHHHHHHHHhhc-ccchHH
Confidence 3577888888888999999999999999999999999999999999999999999999887777766443222 22233
Q ss_pred HHHHhcCChHHHHHHHHHhCChHHHHHHHHHh
Q psy14927 113 RQYENSGQFDEAIHFYSVAGSCGNAVRLCKEQ 144 (1074)
Q Consensus 113 ~~~~~~g~~~~Ai~~y~~a~~~~~A~~la~~~ 144 (1074)
--|...|++++.+++++..+++.||-=+|+.+
T Consensus 729 ~~~~l~g~~~~C~~lLi~t~r~peAal~ArtY 760 (794)
T KOG0276|consen 729 LAYFLSGDYEECLELLISTQRLPEAALFARTY 760 (794)
T ss_pred HHHHHcCCHHHHHHHHHhcCcCcHHHHHHhhh
Confidence 33557899999999999999999999999888
No 241
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=97.02 E-value=0.00099 Score=77.33 Aligned_cols=95 Identities=18% Similarity=0.196 Sum_probs=62.9
Q ss_pred hhhhhccccchHHHHHHHhhhhhhhcc-cccccc-chhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEee-eEEEecCCeE
Q psy14927 796 VVLNTLGNCAAVQANYHLATKLFTQAG-DKGVKL-NLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNG-HGKITGPNTV 872 (1074)
Q Consensus 796 ~VviiGgG~AGl~aA~~la~~l~e~~~-~~g~~~-~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g-~v~~id~~~~ 872 (1074)
+|+|||||++|+..|..|++ .+.... .....+ ....+.+. ....+...+.+.+++.||+++.+ .++.++.+
T Consensus 147 ~vvVvG~G~~g~E~A~~l~~-~~~~~g~~~~V~li~~~~~l~~---~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~-- 220 (364)
T TIGR03169 147 RLAVVGGGAAGVEIALALRR-RLPKRGLRGQVTLIAGASLLPG---FPAKVRRLVLRLLARRGIEVHEGAPVTRGPDG-- 220 (364)
T ss_pred eEEEECCCHHHHHHHHHHHH-HHHhcCCCceEEEEeCCccccc---CCHHHHHHHHHHHHHCCCEEEeCCeeEEEcCC--
Confidence 48999999999999999986 222111 000011 11111111 11334445677888899999999 57777765
Q ss_pred EEEeCCCCeeEEEcCeEEEccCCCCC
Q psy14927 873 TVIKSDGSTEEVKTKNILIATGSEVT 898 (1074)
Q Consensus 873 ~v~~~~G~~~~i~~d~lIIATG~~p~ 898 (1074)
.+.+.+| .++.+|.||+|+|..|.
T Consensus 221 ~v~~~~g--~~i~~D~vi~a~G~~p~ 244 (364)
T TIGR03169 221 ALILADG--RTLPADAILWATGARAP 244 (364)
T ss_pred eEEeCCC--CEEecCEEEEccCCChh
Confidence 4566777 68999999999999874
No 242
>PRK06475 salicylate hydroxylase; Provisional
Probab=97.02 E-value=0.0038 Score=73.46 Aligned_cols=57 Identities=26% Similarity=0.450 Sum_probs=42.4
Q ss_pred HHHHHHHHHHh-CCCEEEeCceEEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccCCc
Q psy14927 950 VAKQFQRILGK-QGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRR 1009 (1074)
Q Consensus 950 ~~~~~~~~l~~-~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~ 1009 (1074)
+.+.+.+.+.+ .||+++++++++.+..+++++.+++.+ .+.++++.+|+||-|-|..
T Consensus 109 l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~~~v~v~~~~---~~~~~~~~adlvIgADG~~ 166 (400)
T PRK06475 109 LQSALLDACRNNPGIEIKLGAEMTSQRQTGNSITATIIR---TNSVETVSAAYLIACDGVW 166 (400)
T ss_pred HHHHHHHHHHhcCCcEEEECCEEEEEecCCCceEEEEEe---CCCCcEEecCEEEECCCcc
Confidence 44555566654 489999999999998877777777765 2224578999999998854
No 243
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=97.00 E-value=0.0055 Score=71.93 Aligned_cols=57 Identities=21% Similarity=0.412 Sum_probs=44.9
Q ss_pred CHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccCCcc
Q psy14927 947 DGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRP 1010 (1074)
Q Consensus 947 ~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p 1010 (1074)
++.+...+.+.+++.|++++.++.|..+...++++.|.+.+ + ++.+|.||+|+|...
T Consensus 148 ~~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~~~~~~V~~~~------g-~i~ad~vV~A~G~~s 204 (393)
T PRK11728 148 YRAVAEAMAELIQARGGEIRLGAEVTALDEHANGVVVRTTQ------G-EYEARTLINCAGLMS 204 (393)
T ss_pred HHHHHHHHHHHHHhCCCEEEcCCEEEEEEecCCeEEEEECC------C-EEEeCEEEECCCcch
Confidence 35677778888899999999999999998766655554332 2 699999999999764
No 244
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=97.00 E-value=0.0021 Score=64.79 Aligned_cols=37 Identities=19% Similarity=0.383 Sum_probs=29.0
Q ss_pred eEEEeeeEEEecC--CeEEEEeCCCCeeEEEcCeEEEccCC
Q psy14927 857 VTQLNGHGKITGP--NTVTVIKSDGSTEEVKTKNILIATGS 895 (1074)
Q Consensus 857 V~~~~g~v~~id~--~~~~v~~~~G~~~~i~~d~lIIATG~ 895 (1074)
|+++..+|+.++. +...+++.+| ..+.+|.||+|||-
T Consensus 117 v~~~~~~V~~i~~~~~~~~v~~~~g--~~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 117 VRHVRAEVVDIRRDDDGYRVVTADG--QSIRADAVVLATGH 155 (156)
T ss_pred EEEEeeEEEEEEEcCCcEEEEECCC--CEEEeCEEEECCCC
Confidence 5566667887763 4567788888 68999999999994
No 245
>PRK08244 hypothetical protein; Provisional
Probab=96.98 E-value=0.0047 Score=74.84 Aligned_cols=58 Identities=16% Similarity=0.250 Sum_probs=45.7
Q ss_pred HHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccCCcc
Q psy14927 950 VAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRP 1010 (1074)
Q Consensus 950 ~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p 1010 (1074)
+.+.+.+.+++.||+++.+++++++..+++++.+++.+.+ | ..++.+|.||.|.|..+
T Consensus 102 le~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~--g-~~~i~a~~vVgADG~~S 159 (493)
T PRK08244 102 TEKVLEEHARSLGVEIFRGAEVLAVRQDGDGVEVVVRGPD--G-LRTLTSSYVVGADGAGS 159 (493)
T ss_pred HHHHHHHHHHHcCCeEEeCCEEEEEEEcCCeEEEEEEeCC--c-cEEEEeCEEEECCCCCh
Confidence 4556667778889999999999999887777777776521 3 35799999999999764
No 246
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=96.96 E-value=0.0017 Score=76.13 Aligned_cols=48 Identities=15% Similarity=0.246 Sum_probs=35.1
Q ss_pred HHHHhhhCC-eEEEeeeEEEec--CCeEEEEeCCCCeeEEEcCeEEEccCCCC
Q psy14927 848 IAHLFKSNK-VTQLNGHGKITG--PNTVTVIKSDGSTEEVKTKNILIATGSEV 897 (1074)
Q Consensus 848 ~~~~l~~~g-V~~~~g~v~~id--~~~~~v~~~~G~~~~i~~d~lIIATG~~p 897 (1074)
+.+.+.+.| |+++..+++.+. .+.+.|++.+| .++.+|.||.|+|...
T Consensus 117 L~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~~~g--~~~~a~~vI~adG~~S 167 (388)
T PRK07608 117 LWAALRFQPNLTWFPARAQGLEVDPDAATLTLADG--QVLRADLVVGADGAHS 167 (388)
T ss_pred HHHHHHhCCCcEEEcceeEEEEecCCeEEEEECCC--CEEEeeEEEEeCCCCc
Confidence 445556666 988833666653 45677777777 5799999999999864
No 247
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=96.95 E-value=0.001 Score=78.10 Aligned_cols=50 Identities=18% Similarity=0.201 Sum_probs=33.5
Q ss_pred HHHHhhhCCeEEEeeeEEEec-----CCeEEEEe--CC-----CCeeEEEcCeEEEccCCCC
Q psy14927 848 IAHLFKSNKVTQLNGHGKITG-----PNTVTVIK--SD-----GSTEEVKTKNILIATGSEV 897 (1074)
Q Consensus 848 ~~~~l~~~gV~~~~g~v~~id-----~~~~~v~~--~~-----G~~~~i~~d~lIIATG~~p 897 (1074)
+.+.+.+.|++++.++++.+. .....|+. .+ |+..+++++.||.|+|..+
T Consensus 99 L~~~a~~~G~~v~~~~~~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~i~a~~VIgADG~~S 160 (398)
T TIGR02028 99 LRRRAADAGATLINGLVTKLSLPADADDPYTLHYISSDSGGPSGTRCTLEVDAVIGADGANS 160 (398)
T ss_pred HHHHHHHCCcEEEcceEEEEEeccCCCceEEEEEeeccccccCCCccEEEeCEEEECCCcch
Confidence 445566779999999776552 12233332 22 4345799999999999876
No 248
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=96.92 E-value=0.0014 Score=76.69 Aligned_cols=102 Identities=15% Similarity=0.110 Sum_probs=60.7
Q ss_pred hhhhhccccchHHHHHHHhh-----hhhhhc-cc---cccccchh---------hhh------------hh-------h-
Q psy14927 796 VVLNTLGNCAAVQANYHLAT-----KLFTQA-GD---KGVKLNLE---------TMM------------GT-------K- 837 (1074)
Q Consensus 796 ~VviiGgG~AGl~aA~~la~-----~l~e~~-~~---~g~~~~~~---------~~~------------~~-------~- 837 (1074)
+|+||||||||+++|+.|++ +++|+. +. .++.+... .+. .. .
T Consensus 2 DVvIVGaGpAG~~aA~~La~~G~~V~l~E~~~~~~~~cg~~i~~~~l~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (388)
T TIGR02023 2 DVAVIGGGPSGATAAETLARAGIETILLERALSNIKPCGGAIPPCLIEEFDIPDSLIDRRVTQMRMISPSRVPIKVTIPS 81 (388)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCcCcCcCCcCHhhhhhcCCchHHHhhhcceeEEEcCCCceeeeccCC
Confidence 49999999999999999999 577765 21 11111000 000 00 0
Q ss_pred -hHH-----HhhhhhhHHHHhhhCCeEEEeeeEEEec--CCeEEEEeCC------CCeeEEEcCeEEEccCCCC
Q psy14927 838 -SAA-----VKALTGGIAHLFKSNKVTQLNGHGKITG--PNTVTVIKSD------GSTEEVKTKNILIATGSEV 897 (1074)
Q Consensus 838 -~~~-----~~~l~~~~~~~l~~~gV~~~~g~v~~id--~~~~~v~~~~------G~~~~i~~d~lIIATG~~p 897 (1074)
... ...+...+.+.+.+.|++++.++++.+. .+.+.+++.+ |+..++.+|.||.|+|...
T Consensus 82 ~~~~~~~~~r~~fd~~L~~~a~~~G~~v~~~~v~~v~~~~~~~~v~~~~~~~~~~~~~~~i~a~~VI~AdG~~S 155 (388)
T TIGR02023 82 EDGYVGMVRREVFDSYLRERAQKAGAELIHGLFLKLERDRDGVTLTYRTPKKGAGGEKGSVEADVVIGADGANS 155 (388)
T ss_pred CCCceEeeeHHHHHHHHHHHHHhCCCEEEeeEEEEEEEcCCeEEEEEEeccccCCCcceEEEeCEEEECCCCCc
Confidence 000 0111223445556679999888776654 3445555442 2235799999999999864
No 249
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=96.91 E-value=0.0042 Score=72.92 Aligned_cols=57 Identities=12% Similarity=0.255 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccCCccc
Q psy14927 949 EVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPY 1011 (1074)
Q Consensus 949 ~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p~ 1011 (1074)
.+.+.+.+.+++.||+++.++.++++..+++++.+++.+ +.++.+|.||.|.|..+.
T Consensus 114 ~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~------g~~~~a~~vV~AdG~~S~ 170 (392)
T PRK08773 114 LLVDRLWAALHAAGVQLHCPARVVALEQDADRVRLRLDD------GRRLEAALAIAADGAAST 170 (392)
T ss_pred HHHHHHHHHHHhCCCEEEcCCeEEEEEecCCeEEEEECC------CCEEEeCEEEEecCCCch
Confidence 455666777888899999999999998877777676544 347999999999998653
No 250
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=96.91 E-value=0.0035 Score=73.92 Aligned_cols=54 Identities=15% Similarity=0.277 Sum_probs=43.0
Q ss_pred HHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccCCc
Q psy14927 950 VAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRR 1009 (1074)
Q Consensus 950 ~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~ 1009 (1074)
+.+.+.+.+.+.||+++.++++.+++.+++++.|++.+ +.++.+|.||.|.|..
T Consensus 114 l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~------g~~~~a~~vVgAdG~~ 167 (405)
T PRK05714 114 VQDALLERLHDSDIGLLANARLEQMRRSGDDWLLTLAD------GRQLRAPLVVAADGAN 167 (405)
T ss_pred HHHHHHHHHhcCCCEEEcCCEEEEEEEcCCeEEEEECC------CCEEEeCEEEEecCCC
Confidence 44556677777899999999999998877777776654 3579999999999864
No 251
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=96.90 E-value=0.0018 Score=76.00 Aligned_cols=103 Identities=18% Similarity=0.130 Sum_probs=63.2
Q ss_pred chhhhhhccccchHHHHHHHhh-----hhhhhccccccccc---------hhhhhhhhhH--------------------
Q psy14927 794 RQVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLN---------LETMMGTKSA-------------------- 839 (1074)
Q Consensus 794 k~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~---------~~~~~~~~~~-------------------- 839 (1074)
+.+|+||||||||++||+.|++ .++|+....|.... +..+.+....
T Consensus 3 ~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~i~~~v~~~~~~~~~~~~~~ 82 (396)
T COG0644 3 EYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEEIERKVTGARIYFPGEKVAI 82 (396)
T ss_pred eeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccccceechhhHHHhCCCcchhhheeeeeeEEEecCCceEE
Confidence 3459999999999999999999 67787655443210 0000000000
Q ss_pred ----------HHhhhhhhHHHHhhhCCeEEEeee-EEEec--CCeEEEEeCCCCeeEEEcCeEEEccCCCC
Q psy14927 840 ----------AVKALTGGIAHLFKSNKVTQLNGH-GKITG--PNTVTVIKSDGSTEEVKTKNILIATGSEV 897 (1074)
Q Consensus 840 ----------~~~~l~~~~~~~l~~~gV~~~~g~-v~~id--~~~~~v~~~~G~~~~i~~d~lIIATG~~p 897 (1074)
....+-.++.....+.|++++.++ ++.+. .+...+.+..|+ .++++++||.|+|+..
T Consensus 83 ~~~~~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~~~~-~e~~a~~vI~AdG~~s 152 (396)
T COG0644 83 EVPVGEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVRAGD-DEVRAKVVIDADGVNS 152 (396)
T ss_pred ecCCCceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEEcCC-EEEEcCEEEECCCcch
Confidence 001122235666777899999983 44443 333333333332 6899999999999875
No 252
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=96.90 E-value=0.002 Score=77.75 Aligned_cols=48 Identities=19% Similarity=0.366 Sum_probs=33.7
Q ss_pred HHHHhhhC-CeEEEeeeEEEec--CCeE-EEEeCCCCeeEEEcCeEEEccCCCC
Q psy14927 848 IAHLFKSN-KVTQLNGHGKITG--PNTV-TVIKSDGSTEEVKTKNILIATGSEV 897 (1074)
Q Consensus 848 ~~~~l~~~-gV~~~~g~v~~id--~~~~-~v~~~~G~~~~i~~d~lIIATG~~p 897 (1074)
+.+.+.+. |++++.++|+.+. .+.+ .|.+.+| ..+.++.||+|||...
T Consensus 106 L~e~L~~~~nV~I~q~~V~~Li~e~grV~GV~t~dG--~~I~Ak~VIlATGTFL 157 (618)
T PRK05192 106 MREILENQPNLDLFQGEVEDLIVENGRVVGVVTQDG--LEFRAKAVVLTTGTFL 157 (618)
T ss_pred HHHHHHcCCCcEEEEeEEEEEEecCCEEEEEEECCC--CEEECCEEEEeeCcch
Confidence 33444444 8999888877653 3333 3667777 6899999999999753
No 253
>PRK07190 hypothetical protein; Provisional
Probab=96.88 E-value=0.009 Score=71.94 Aligned_cols=54 Identities=22% Similarity=0.253 Sum_probs=42.2
Q ss_pred HHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccCCc
Q psy14927 950 VAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRR 1009 (1074)
Q Consensus 950 ~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~ 1009 (1074)
+...+.+.+.+.||+++.+++++.+..+++++.+.+.+ +.++.++.||.|.|..
T Consensus 111 le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~v~v~~~~------g~~v~a~~vVgADG~~ 164 (487)
T PRK07190 111 VEKLLDDKLKEAGAAVKRNTSVVNIELNQAGCLTTLSN------GERIQSRYVIGADGSR 164 (487)
T ss_pred HHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeeEEEECC------CcEEEeCEEEECCCCC
Confidence 44556677788899999999999998877776665543 3479999999998864
No 254
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=96.88 E-value=0.0012 Score=72.10 Aligned_cols=101 Identities=16% Similarity=0.121 Sum_probs=60.9
Q ss_pred hhhhhccccchHHHHHHHhh-----hhhhhccccccccc-----hhh---------hhhhh--------h----HHHhhh
Q psy14927 796 VVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLN-----LET---------MMGTK--------S----AAVKAL 844 (1074)
Q Consensus 796 ~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~-----~~~---------~~~~~--------~----~~~~~l 844 (1074)
+|+||||||+|+.||+.+++ .++|+....|+... ++. +.... . .....+
T Consensus 23 DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~~~gg~~~~~~~~~~~~~~~l~~~gi~~~~~~~g~~~~~~~el 102 (254)
T TIGR00292 23 DVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGSWGGGMLFSKIVVEKPAHEILDEFGIRYEDEGDGYVVADSAEF 102 (254)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccccCCCcceecccccchHHHHHHHCCCCeeeccCceEEeeHHHH
Confidence 49999999999999999998 78888776653221 100 00000 0 001123
Q ss_pred hhhHHHHhhhCCeEEEee-eEEEec--CC--eE-EEEeC------CC---CeeEEEcCeEEEccCCC
Q psy14927 845 TGGIAHLFKSNKVTQLNG-HGKITG--PN--TV-TVIKS------DG---STEEVKTKNILIATGSE 896 (1074)
Q Consensus 845 ~~~~~~~l~~~gV~~~~g-~v~~id--~~--~~-~v~~~------~G---~~~~i~~d~lIIATG~~ 896 (1074)
...+.....+.||+++.+ .++.+. ++ .+ -|.+. .| +..++.++.||.|||..
T Consensus 103 ~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~ 169 (254)
T TIGR00292 103 ISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHD 169 (254)
T ss_pred HHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCC
Confidence 334555667789999988 455543 22 11 22222 11 23579999999999965
No 255
>KOG2376|consensus
Probab=96.87 E-value=0.46 Score=55.81 Aligned_cols=314 Identities=17% Similarity=0.199 Sum_probs=180.2
Q ss_pred hhhcCCHHHHHHHHHHcCcccchh-------hhHhh--hcHHHHHHHhhc--CCChHHHHHHHHHHHhccCHHHHHHHHH
Q psy14927 6 TMKNGDIDRAIRMFEKAETHQQHV-------PRMLL--ENTDKLEKYIIQ--SKDPVLLKWWAQYIESTEDMDLAMKYYE 74 (1074)
Q Consensus 6 ~~~~g~~~eA~~~Ye~~~~~~~~~-------~~~~~--~~~~~~~~~~~~--~~~~~l~~~~a~~~e~~~~~~~A~~~y~ 74 (1074)
|-+.++|++|..+-++-+-++ .. +...+ +..+.+-..+.. ..++.++.-.||++...++|++|...|.
T Consensus 56 lIq~~ky~~ALk~ikk~~~~~-~~~~~~fEKAYc~Yrlnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~ 134 (652)
T KOG2376|consen 56 LIQLDKYEDALKLIKKNGALL-VINSFFFEKAYCEYRLNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQ 134 (652)
T ss_pred hhhhhHHHHHHHHHHhcchhh-hcchhhHHHHHHHHHcccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 456789999997766665322 22 12222 233333333332 3567799999999999999999999999
Q ss_pred Hh-----hChhhhhhH-hhccCCHHHH--HHHHH--hcCChHHHHHHHHHHHhcCChHHHHHHHHHhCChHHHHHHHHHh
Q psy14927 75 EA-----RDYLSMVRV-LCFLQDFSRA--AELAN--ASGDTAAAYHLARQYENSGQFDEAIHFYSVAGSCGNAVRLCKEQ 144 (1074)
Q Consensus 75 ~a-----~d~~~~vr~-l~~~~~~~~a--~~i~~--~~~~~~~~~~la~~~~~~g~~~~Ai~~y~~a~~~~~A~~la~~~ 144 (1074)
.. .|++.-+|. |..-+--..+ .+.+. ...+-+.+|..|-.+...|+|.+|++.+.+ |.++|++.
T Consensus 135 ~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~k------A~~~~~e~ 208 (652)
T KOG2376|consen 135 HLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEK------ALRICREK 208 (652)
T ss_pred HHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHH------HHHHHHHh
Confidence 86 566666666 3332222122 22222 134667899999999999999999999765 56788776
Q ss_pred CchHHHHHHhhhcCchhHHHHHHHHcc-CCh--hHHHHHHHHhCChHHHHHHHHhh----------------cc------
Q psy14927 145 ALDDQLWNLALSAGPSEQIEAATYLET-IEP--DKAVLLYHKAGALHKALDLAFKL----------------TL------ 199 (1074)
Q Consensus 145 ~~~~~~~~l~~~~~~~~~~~~A~~~e~-~~~--~~A~~ly~kaG~~~kAl~l~~~~----------------~~------ 199 (1074)
|..+...++ ..++ -+. .+=.-.++..|+-.+|..++... .+
T Consensus 209 --------l~~~d~~eE------eie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d 274 (652)
T KOG2376|consen 209 --------LEDEDTNEE------EIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKD 274 (652)
T ss_pred --------hcccccchh------hHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccc
Confidence 111111111 0111 111 11112234445555555433321 10
Q ss_pred ---CCcc-------hH-----H-------------------------HH-HHHHHHhc-CCCh-hh---HHHhhhhcchH
Q psy14927 200 ---SNSG-------LV-----F-------------------------QI-KAMKCLLK-SGDT-NK---IIFFAGVSRMK 233 (1074)
Q Consensus 200 ---~~~~-------~~-----~-------------------------~~-~a~k~l~~-~~~~-~~---~i~~a~~~r~~ 233 (1074)
+|+. .+ + +. .+.+.+.+ .++. +. +...+....+.
T Consensus 275 ~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~ 354 (652)
T KOG2376|consen 275 QNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLPGMSPESLFPILLQEATKVRE 354 (652)
T ss_pred cccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHH
Confidence 1100 00 0 00 11111111 1222 22 22223333344
Q ss_pred HHHHHHHHHHhcCCCCCChhH---HH-HHHHHHHccCCHHHHHHHHH--------HH-------------HhHHHHhhcC
Q psy14927 234 EIYVMAANYLQSSDWKSQPEL---LK-SIISFYSKGKAPHLLANFYV--------SC-------------AQVEIDEFGN 288 (1074)
Q Consensus 234 ~l~~~aa~yl~~~~~~~~~~~---~~-~i~~~Y~k~~~~~~aa~~~~--------~~-------------a~~ei~e~~~ 288 (1074)
..+..+..+|+.. .+++|.. .. -.+++-...|.++.|...+. .+ ..+- .--++
T Consensus 355 ~~~~ka~e~L~~~-~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~-~~~~~ 432 (652)
T KOG2376|consen 355 KKHKKAIELLLQF-ADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIVALY-YKIKD 432 (652)
T ss_pred HHHhhhHHHHHHH-hccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHH-HhccC
Confidence 4788899999886 4555544 22 23788888999998887766 11 1111 22344
Q ss_pred HHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhhcCChHHHhhHHHHHHH
Q psy14927 289 YEKGLGALNEAKRCLLKHNDSMYETLKSSVVEKLAEVEIDEFGNYEKGLGALNEAKR 345 (1074)
Q Consensus 289 y~~a~~~l~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 345 (1074)
=..|-+.|.+|++.++++.... .+...+|-.++-+..+ .|.-..|++.|.+..+
T Consensus 433 ~~~a~~vl~~Ai~~~~~~~t~s--~~l~~~~~~aa~f~lr-~G~~~ea~s~leel~k 486 (652)
T KOG2376|consen 433 NDSASAVLDSAIKWWRKQQTGS--IALLSLMREAAEFKLR-HGNEEEASSLLEELVK 486 (652)
T ss_pred CccHHHHHHHHHHHHHHhcccc--hHHHhHHHHHhHHHHh-cCchHHHHHHHHHHHH
Confidence 4558899999999999987655 4566677677777667 6999999998887554
No 256
>PRK12370 invasion protein regulator; Provisional
Probab=96.87 E-value=0.077 Score=65.23 Aligned_cols=70 Identities=13% Similarity=0.063 Sum_probs=49.8
Q ss_pred hccCHHHHHHHHHHhhCh--------hhhhhHhhccCCHHHHHHHHH-----hcCChHHHHHHHHHHHhcCChHHHHHHH
Q psy14927 62 STEDMDLAMKYYEEARDY--------LSMVRVLCFLQDFSRAAELAN-----ASGDTAAAYHLARQYENSGQFDEAIHFY 128 (1074)
Q Consensus 62 ~~~~~~~A~~~y~~a~d~--------~~~vr~l~~~~~~~~a~~i~~-----~~~~~~~~~~la~~~~~~g~~~~Ai~~y 128 (1074)
..+++++|..+|.++=.. ..+..++...|++++|....+ .+++..+.+.+|..+...|++++|++.|
T Consensus 316 ~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~ 395 (553)
T PRK12370 316 KQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTI 395 (553)
T ss_pred cchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 345578888888775543 123445667888888877765 3566777888899988889988888876
Q ss_pred HHh
Q psy14927 129 SVA 131 (1074)
Q Consensus 129 ~~a 131 (1074)
.++
T Consensus 396 ~~A 398 (553)
T PRK12370 396 NEC 398 (553)
T ss_pred HHH
Confidence 653
No 257
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=96.84 E-value=0.0081 Score=70.46 Aligned_cols=55 Identities=18% Similarity=0.262 Sum_probs=40.7
Q ss_pred HHHHHHHHhCCCEEEeCceEEEEEe-cCCeEEEEEeeccCCCCceEEEcCEEEEccCCc
Q psy14927 952 KQFQRILGKQGMQFKLGTKVTGASK-SGDNITVTIENVKDPTKKEELSCDALLVCVGRR 1009 (1074)
Q Consensus 952 ~~~~~~l~~~gV~i~~~~~v~~i~~-~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~ 1009 (1074)
+.+.+...+.|+++++++++++++. +++.+.|++.. +|+..++.+|.||-|-|..
T Consensus 107 ~~Ll~~a~~~gv~v~~~~~v~~i~~~~~~~~~V~~~~---~G~~~~i~ad~vVgADG~~ 162 (392)
T PRK08243 107 RDLMAARLAAGGPIRFEASDVALHDFDSDRPYVTYEK---DGEEHRLDCDFIAGCDGFH 162 (392)
T ss_pred HHHHHHHHhCCCeEEEeeeEEEEEecCCCceEEEEEc---CCeEEEEEeCEEEECCCCC
Confidence 3444555677999999999999876 55566677643 3555689999999998864
No 258
>PRK06834 hypothetical protein; Provisional
Probab=96.84 E-value=0.0022 Score=77.24 Aligned_cols=101 Identities=16% Similarity=0.148 Sum_probs=64.1
Q ss_pred hhhhhhccccchHHHHHHHhh-----hhhhhcccc---cc---ccch------------hhhhh---------hh-----
Q psy14927 795 QVVLNTLGNCAAVQANYHLAT-----KLFTQAGDK---GV---KLNL------------ETMMG---------TK----- 837 (1074)
Q Consensus 795 ~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~---g~---~~~~------------~~~~~---------~~----- 837 (1074)
.+|+||||||+|+.+|+.|++ +++|+.+.. +. .+.. ..+.. +.
T Consensus 4 ~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~~ 83 (488)
T PRK06834 4 HAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRFLAQGQVAQVTGFAATRLD 83 (488)
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHHHhcCCccccceeeeEecc
Confidence 459999999999999999999 677765421 11 1100 00000 00
Q ss_pred -h------H-----HHhhhhhhHHHHhhhCCeEEEee-eEEEe--cCCeEEEEeCCCCeeEEEcCeEEEccCCCC
Q psy14927 838 -S------A-----AVKALTGGIAHLFKSNKVTQLNG-HGKIT--GPNTVTVIKSDGSTEEVKTKNILIATGSEV 897 (1074)
Q Consensus 838 -~------~-----~~~~l~~~~~~~l~~~gV~~~~g-~v~~i--d~~~~~v~~~~G~~~~i~~d~lIIATG~~p 897 (1074)
. . ....+...+.+.+...||+++.+ +++.+ +.+.+.+++.+| .++.+|+||.|.|.++
T Consensus 84 ~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~v~v~~~~g--~~i~a~~vVgADG~~S 156 (488)
T PRK06834 84 ISDFPTRHNYGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQDDTGVDVELSDG--RTLRAQYLVGCDGGRS 156 (488)
T ss_pred cccCCCCCCccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCeEEEEECCC--CEEEeCEEEEecCCCC
Confidence 0 0 00112223445566779999999 46655 345677777777 5899999999999976
No 259
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=96.83 E-value=0.13 Score=54.24 Aligned_cols=62 Identities=19% Similarity=0.177 Sum_probs=46.5
Q ss_pred ChHHHHHHHHHHHhccCHHHHHHHHHHhhChhhhhhHhhccCCHHHHHHHHHhcCChHHHHHHHHHHHhcCChHHHHHHH
Q psy14927 49 DPVLLKWWAQYIESTEDMDLAMKYYEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAAYHLARQYENSGQFDEAIHFY 128 (1074)
Q Consensus 49 ~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~~~~vr~l~~~~~~~~a~~i~~~~~~~~~~~~la~~~~~~g~~~~Ai~~y 128 (1074)
....+...|..+...|++++|.+.|.++-+. .+.+..+...+|..+...|++++|+++|
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~---------------------~p~~~~~~~~la~~~~~~~~~~~A~~~~ 88 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEH---------------------DPDDYLAYLALALYYQQLGELEKAEDSF 88 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---------------------CcccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3567778899999999999999988876321 2234556677888888888888888887
Q ss_pred HHh
Q psy14927 129 SVA 131 (1074)
Q Consensus 129 ~~a 131 (1074)
.++
T Consensus 89 ~~a 91 (234)
T TIGR02521 89 RRA 91 (234)
T ss_pred HHH
Confidence 654
No 260
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=96.80 E-value=0.013 Score=66.88 Aligned_cols=44 Identities=30% Similarity=0.393 Sum_probs=39.5
Q ss_pred CeeeCCCCCCCCCCEEEecccCCCCCcHHHHHHHHHHHHHHhhC
Q psy14927 1029 RVPVNSRFQTVIPNIFAIGDCIHGPMLAHKAEDEGIVCVEGIAG 1072 (1074)
Q Consensus 1029 ~I~Vd~~~~ts~~~IyAiGD~~~~~~~~~~A~~~G~~aA~~I~~ 1072 (1074)
+|.+|+.+.|+++|+|++||+++....+..|..+|-.+|..|+.
T Consensus 438 ri~~d~~~~t~i~gLy~aGdGAG~argI~~Aaa~Gi~~A~~i~~ 481 (486)
T COG2509 438 RIKVDEDLSTSIKGLYPAGDGAGLARGIVSAAADGIKAAEGIAR 481 (486)
T ss_pred eEeecccceeeecceEEccccccccchhHHHhhhhHHHHHHHHH
Confidence 47788888999999999999999877889999999999999874
No 261
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=96.80 E-value=0.0022 Score=76.02 Aligned_cols=95 Identities=19% Similarity=0.132 Sum_probs=63.9
Q ss_pred hhhhhccccchHHHHHHHhhhhhhhcc-------ccccccch----hhhhhhhhHHHhhhhhhHHHHhhhCCeEEEee-e
Q psy14927 796 VVLNTLGNCAAVQANYHLATKLFTQAG-------DKGVKLNL----ETMMGTKSAAVKALTGGIAHLFKSNKVTQLNG-H 863 (1074)
Q Consensus 796 ~VviiGgG~AGl~aA~~la~~l~e~~~-------~~g~~~~~----~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g-~ 863 (1074)
+|+|||||+.|+..|..++. .+.... ..+..+.+ ..+.+.. ...+.....+.+++.||+++.+ .
T Consensus 175 ~vvVvGgG~~GvE~A~~l~~-~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~~~---~~~~~~~~~~~L~~~gV~v~~~~~ 250 (424)
T PTZ00318 175 HFVVVGGGPTGVEFAAELAD-FFRDDVRNLNPELVEECKVTVLEAGSEVLGSF---DQALRKYGQRRLRRLGVDIRTKTA 250 (424)
T ss_pred EEEEECCCHHHHHHHHHHHH-HHHHHHHhhhhcccccCEEEEEcCCCcccccC---CHHHHHHHHHHHHHCCCEEEeCCe
Confidence 48999999999999999986 222110 01111111 1111211 1344555778888999999988 5
Q ss_pred EEEecCCeEEEEeCCCCeeEEEcCeEEEccCCCCC
Q psy14927 864 GKITGPNTVTVIKSDGSTEEVKTKNILIATGSEVT 898 (1074)
Q Consensus 864 v~~id~~~~~v~~~~G~~~~i~~d~lIIATG~~p~ 898 (1074)
++.++++. |++++| .++.+|.+|+++|..|+
T Consensus 251 v~~v~~~~--v~~~~g--~~i~~d~vi~~~G~~~~ 281 (424)
T PTZ00318 251 VKEVLDKE--VVLKDG--EVIPTGLVVWSTGVGPG 281 (424)
T ss_pred EEEEeCCE--EEECCC--CEEEccEEEEccCCCCc
Confidence 77887764 556777 58999999999998875
No 262
>KOG0495|consensus
Probab=96.79 E-value=0.17 Score=59.76 Aligned_cols=318 Identities=14% Similarity=0.154 Sum_probs=181.4
Q ss_pred HHhhhcCCHHHHHHHHHHcCcccchh------hhHhhh---cHHHHHHHhhc-----CCChHHHHHHHHHHHhccCHHHH
Q psy14927 4 EETMKNGDIDRAIRMFEKAETHQQHV------PRMLLE---NTDKLEKYIIQ-----SKDPVLLKWWAQYIESTEDMDLA 69 (1074)
Q Consensus 4 ~~~~~~g~~~eA~~~Ye~~~~~~~~~------~~~~~~---~~~~~~~~~~~-----~~~~~l~~~~a~~~e~~~~~~~A 69 (1074)
+.++.++.++=|...|-.+-+....= +-|+-+ .-..++.++.+ ++++.||..||+-+--.|+...|
T Consensus 524 ~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~a 603 (913)
T KOG0495|consen 524 QSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAA 603 (913)
T ss_pred HHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHH
Confidence 56888999999999998887654222 223322 22344444444 57889999999988888999888
Q ss_pred HH----HHHHhhC----hhhhhhHhhccCCHHHHHHHHHhcCChHHHHHHHHHHHhcCChHHHHHHHHHhCChHHHHHHH
Q psy14927 70 MK----YYEEARD----YLSMVRVLCFLQDFSRAAELANASGDTAAAYHLARQYENSGQFDEAIHFYSVAGSCGNAVRLC 141 (1074)
Q Consensus 70 ~~----~y~~a~d----~~~~vr~l~~~~~~~~a~~i~~~~~~~~~~~~la~~~~~~g~~~~Ai~~y~~a~~~~~A~~la 141 (1074)
.. +|+...+ |..+|++.....++++|..+...+.+.+..- |.|. .-+.|-.-.+..++|++|+
T Consensus 604 r~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTe---Rv~m------Ks~~~er~ld~~eeA~rll 674 (913)
T KOG0495|consen 604 RVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTE---RVWM------KSANLERYLDNVEEALRLL 674 (913)
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcc---hhhH------HHhHHHHHhhhHHHHHHHH
Confidence 75 4444433 4678889999999999999877554433221 1111 1122223334445555555
Q ss_pred HHhCchHHHHHHhhhcCc--hhHHHHHHHHcc-CChhHHHHHHH---------------------HhCChHHHHHHHHhh
Q psy14927 142 KEQALDDQLWNLALSAGP--SEQIEAATYLET-IEPDKAVLLYH---------------------KAGALHKALDLAFKL 197 (1074)
Q Consensus 142 ~~~~~~~~~~~l~~~~~~--~~~~~~A~~~e~-~~~~~A~~ly~---------------------kaG~~~kAl~l~~~~ 197 (1074)
++. ...++. ..++..++.+|+ ++.+.|-..|. |.|++.+|--.+-+.
T Consensus 675 Ee~---------lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildra 745 (913)
T KOG0495|consen 675 EEA---------LKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRA 745 (913)
T ss_pred HHH---------HHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 443 122222 345556666666 45566665554 456666666665554
Q ss_pred ccCCc-chHHHHHHHHHHhcCCChhhHHHhhhhcch-----HHHHHHH-------------HHHHhcCCCCCChhHHHHH
Q psy14927 198 TLSNS-GLVFQIKAMKCLLKSGDTNKIIFFAGVSRM-----KEIYVMA-------------ANYLQSSDWKSQPELLKSI 258 (1074)
Q Consensus 198 ~~~~~-~~~~~~~a~k~l~~~~~~~~~i~~a~~~r~-----~~l~~~a-------------a~yl~~~~~~~~~~~~~~i 258 (1074)
-+-|. +..+|+.+.+.=++.|+.+.+-.....+-| ..||.-+ .|=|..- +.||...-.|
T Consensus 746 rlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkc--e~dphVllai 823 (913)
T KOG0495|consen 746 RLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKC--EHDPHVLLAI 823 (913)
T ss_pred HhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhc--cCCchhHHHH
Confidence 33332 345788888888887777665333322211 2333322 2333332 5667777777
Q ss_pred HHHHHccCCHHHHHHHHHHHHhHHHHhhcCHHHHHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHhhcCChHHHh
Q psy14927 259 ISFYSKGKAPHLLANFYVSCAQVEIDEFGNYEKGLGALNEAKRCLLKHNDS-MYETLKSSVVEKLAEVEIDEFGNYEKGL 337 (1074)
Q Consensus 259 ~~~Y~k~~~~~~aa~~~~~~a~~ei~e~~~y~~a~~~l~~a~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 337 (1074)
.++|-.-+.++++-..+....... ..+||.=. .+ ++.-..+|.. ...++. +..+. -|+.- =
T Consensus 824 a~lfw~e~k~~kar~Wf~Ravk~d-~d~GD~wa---~f---ykfel~hG~eed~kev~--------~~c~~--~EP~h-G 885 (913)
T KOG0495|consen 824 AKLFWSEKKIEKAREWFERAVKKD-PDNGDAWA---WF---YKFELRHGTEEDQKEVL--------KKCET--AEPTH-G 885 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccC-CccchHHH---HH---HHHHHHhCCHHHHHHHH--------HHHhc--cCCCC-C
Confidence 777777777777777777777776 55665322 22 2222333321 111111 11111 11111 1
Q ss_pred hHHHHHHHHHhhccCcchhHHH
Q psy14927 338 GALNEAKRCLLKHNDSMYETLK 359 (1074)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~i~~ 359 (1074)
..|..+++++..|-.-.-.||.
T Consensus 886 ~~W~avSK~i~n~~~t~~eiL~ 907 (913)
T KOG0495|consen 886 ELWQAVSKDIKNWRKTPEEILL 907 (913)
T ss_pred cHHHHHhhhHHhccCCHHHHHH
Confidence 2678888998888877766765
No 263
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=96.77 E-value=0.0042 Score=72.71 Aligned_cols=56 Identities=21% Similarity=0.369 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHhCC-CEEEeCceEEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccCCc
Q psy14927 949 EVAKQFQRILGKQG-MQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRR 1009 (1074)
Q Consensus 949 ~~~~~~~~~l~~~g-V~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~ 1009 (1074)
.+...+.+.+.+.+ |+++.++.|+.++.+++.+.+++.. + ++++.||+||-|-|..
T Consensus 105 ~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~v~l~~-d----G~~~~a~llVgADG~~ 161 (387)
T COG0654 105 DLLNALLEAARALPNVTLRFGAEVEAVEQDGDGVTVTLSF-D----GETLDADLLVGADGAN 161 (387)
T ss_pred HHHHHHHHHHhhCCCcEEEcCceEEEEEEcCCceEEEEcC-C----CcEEecCEEEECCCCc
Confidence 35566777777665 9999999999999988777787773 2 3499999999998853
No 264
>PRK10015 oxidoreductase; Provisional
Probab=96.77 E-value=0.0089 Score=70.88 Aligned_cols=51 Identities=18% Similarity=0.309 Sum_probs=36.8
Q ss_pred HHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccCC
Q psy14927 952 KQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGR 1008 (1074)
Q Consensus 952 ~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~ 1008 (1074)
..+.+..++.|++++.++.|+.+..+++.+.....+ +.++.+|.||.|.|.
T Consensus 112 ~~L~~~a~~~Gv~i~~~~~V~~i~~~~~~v~~v~~~------~~~i~A~~VI~AdG~ 162 (429)
T PRK10015 112 PWLMEQAEQAGAQFIPGVRVDALVREGNKVTGVQAG------DDILEANVVILADGV 162 (429)
T ss_pred HHHHHHHHHcCCEEECCcEEEEEEEeCCEEEEEEeC------CeEEECCEEEEccCc
Confidence 345566677899999999999987765544322222 357999999999986
No 265
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=96.75 E-value=0.0092 Score=73.10 Aligned_cols=59 Identities=19% Similarity=0.401 Sum_probs=45.3
Q ss_pred HHHHHHHHHHh-CCCEEEeCceEEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccCCcc
Q psy14927 950 VAKQFQRILGK-QGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRP 1010 (1074)
Q Consensus 950 ~~~~~~~~l~~-~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p 1010 (1074)
+.+.+.+.+.+ .||++++++++++++.+++++.+++++. +|+..++.+|.||-|.|...
T Consensus 115 le~~L~~~~~~~~gv~v~~g~~v~~i~~~~~~v~v~~~~~--~G~~~~i~ad~vVgADG~~S 174 (538)
T PRK06183 115 LEAVLRAGLARFPHVRVRFGHEVTALTQDDDGVTVTLTDA--DGQRETVRARYVVGCDGANS 174 (538)
T ss_pred HHHHHHHHHHhCCCcEEEcCCEEEEEEEcCCeEEEEEEcC--CCCEEEEEEEEEEecCCCch
Confidence 44555666665 4999999999999998888888887642 24457899999999988643
No 266
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=96.75 E-value=0.003 Score=73.14 Aligned_cols=57 Identities=21% Similarity=0.389 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHhCCCEEEeCceEEEEEecCCe-EEEEEeeccCCCCceEEEcCEEEEccCCcc
Q psy14927 949 EVAKQFQRILGKQGMQFKLGTKVTGASKSGDN-ITVTIENVKDPTKKEELSCDALLVCVGRRP 1010 (1074)
Q Consensus 949 ~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~-~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p 1010 (1074)
++...+.+.+.++|+++.+++.|..|+..+++ ..+.+.+ |+.+ ++|+.||.|.|.-.
T Consensus 154 ~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~dg~~~~~~~~----g~~~-~~ak~Vin~AGl~A 211 (429)
T COG0579 154 ELTRALAEEAQANGVELRLNTEVTGIEKQSDGVFVLNTSN----GEET-LEAKFVINAAGLYA 211 (429)
T ss_pred HHHHHHHHHHHHcCCEEEecCeeeEEEEeCCceEEEEecC----CcEE-EEeeEEEECCchhH
Confidence 35666777778889999999999999998775 3343333 4334 99999999998654
No 267
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=96.74 E-value=0.0038 Score=76.90 Aligned_cols=85 Identities=8% Similarity=0.143 Sum_probs=55.9
Q ss_pred hhHHhhcCCcEEEEecCCccCCCC--------------CCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCe-EEEEEe
Q psy14927 922 GSVWGRLGAEVTAIEFMNAIGGMG--------------IDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDN-ITVTIE 986 (1074)
Q Consensus 922 A~~l~~~G~~Vtlv~~~~~~~~~~--------------~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~-~~v~~~ 986 (1074)
+..+...|..++++.+...++ +. ....+...+.+.+++.||+++.++.++++..+++. +.|.+.
T Consensus 175 ~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~g~~~~~G~~l~~~L~~~~~~~Gv~i~~~~~v~~l~~~~g~V~GV~~~ 253 (574)
T PRK12842 175 KHFFNATRSLTSFIYVAKRLA-THLKDLALYRRGTQVTSGNALAARLAKSALDLGIPILTGTPARELLTEGGRVVGARVI 253 (574)
T ss_pred HHHHhhccchhHHHHHHHHHH-hhHHHHhhccCCcccccHHHHHHHHHHHHHhCCCEEEeCCEEEEEEeeCCEEEEEEEE
Confidence 445556666666655444443 21 12446666778888999999999999998865554 345554
Q ss_pred eccCCCCceEEEcC-EEEEccCCcc
Q psy14927 987 NVKDPTKKEELSCD-ALLVCVGRRP 1010 (1074)
Q Consensus 987 ~~~~~g~~~~i~~D-~vi~a~G~~p 1010 (1074)
+ .+....+.++ .||+|+|..+
T Consensus 254 ~---~~~~~~i~a~k~VVlAtGg~~ 275 (574)
T PRK12842 254 D---AGGERRITARRGVVLACGGFS 275 (574)
T ss_pred c---CCceEEEEeCCEEEEcCCCcc
Confidence 4 2223467886 7999999765
No 268
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=96.73 E-value=0.0017 Score=76.38 Aligned_cols=91 Identities=23% Similarity=0.208 Sum_probs=69.7
Q ss_pred hhhhhhccccchHHHHHHHhh-----hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEee-eEEEec
Q psy14927 795 QVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNG-HGKITG 868 (1074)
Q Consensus 795 ~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g-~v~~id 868 (1074)
++|+|+|||+.|+.+|..+++ ++++..+..++.+.. ..+...+.+.++..||+++.+ .+..++
T Consensus 137 ~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~~-----------~~~~~~~~~~l~~~gi~~~~~~~~~~i~ 205 (415)
T COG0446 137 KDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLLD-----------PEVAEELAELLEKYGVELLLGTKVVGVE 205 (415)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchhhhh-----------HHHHHHHHHHHHHCCcEEEeCCceEEEE
Confidence 349999999999999999999 788888887776643 223334677788889999998 467777
Q ss_pred CCeEE-----EEeCCCCeeEEEcCeEEEccCCCCC
Q psy14927 869 PNTVT-----VIKSDGSTEEVKTKNILIATGSEVT 898 (1074)
Q Consensus 869 ~~~~~-----v~~~~G~~~~i~~d~lIIATG~~p~ 898 (1074)
..... +...++ ..+.+|.+++++|.+|+
T Consensus 206 ~~~~~~~~~~~~~~~~--~~~~~d~~~~~~g~~p~ 238 (415)
T COG0446 206 GKGNTLVVERVVGIDG--EEIKADLVIIGPGERPN 238 (415)
T ss_pred cccCcceeeEEEEeCC--cEEEeeEEEEeeccccc
Confidence 54321 455566 67999999999999984
No 269
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=96.72 E-value=0.014 Score=71.77 Aligned_cols=58 Identities=24% Similarity=0.371 Sum_probs=42.7
Q ss_pred HHHHHHHHHHhC-CCEEEeCceEEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccCCcc
Q psy14927 950 VAKQFQRILGKQ-GMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRP 1010 (1074)
Q Consensus 950 ~~~~~~~~l~~~-gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p 1010 (1074)
+...+.+.+.+. ||++++++++++++.+++++.+++.+. +...++.+|.||.|.|...
T Consensus 127 le~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~v~v~~~~~---~g~~~i~ad~vVgADG~~S 185 (547)
T PRK08132 127 VEGYLVERAQALPNIDLRWKNKVTGLEQHDDGVTLTVETP---DGPYTLEADWVIACDGARS 185 (547)
T ss_pred HHHHHHHHHHhCCCcEEEeCCEEEEEEEcCCEEEEEEECC---CCcEEEEeCEEEECCCCCc
Confidence 344555666554 799999999999998777777766541 2235799999999998654
No 270
>KOG2076|consensus
Probab=96.70 E-value=0.39 Score=59.02 Aligned_cols=284 Identities=17% Similarity=0.139 Sum_probs=159.5
Q ss_pred ChHHHHHH--HHHHHhccCHHHHHHHHHH--------hhChhhhhhHhhccCCHHHHHHHHH-----hcCChHHHHHHHH
Q psy14927 49 DPVLLKWW--AQYIESTEDMDLAMKYYEE--------ARDYLSMVRVLCFLQDFSRAAELAN-----ASGDTAAAYHLAR 113 (1074)
Q Consensus 49 ~~~l~~~~--a~~~e~~~~~~~A~~~y~~--------a~d~~~~vr~l~~~~~~~~a~~i~~-----~~~~~~~~~~la~ 113 (1074)
+|++...+ |..+-.+|++++|.+...- .-=|.-+.+|+...|+++++....- +++|.+-..++|.
T Consensus 136 ~~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~lad 215 (895)
T KOG2076|consen 136 APELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLAD 215 (895)
T ss_pred CHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 34455555 4455567888888877654 2234566677788888888765422 5678888889999
Q ss_pred HHHhcCChHHHHHHHHHhCCh--------HHHHHHHHHhCc----hHHHHHHhhhcCchhHHHHHHHHccCChhHHHHHH
Q psy14927 114 QYENSGQFDEAIHFYSVAGSC--------GNAVRLCKEQAL----DDQLWNLALSAGPSEQIEAATYLETIEPDKAVLLY 181 (1074)
Q Consensus 114 ~~~~~g~~~~Ai~~y~~a~~~--------~~A~~la~~~~~----~~~~~~l~~~~~~~~~~~~A~~~e~~~~~~A~~ly 181 (1074)
..+++|++.+|+-+|.++=+. -+=..|++++|. |+-+..+.+..+|.+... ++. -....+..|
T Consensus 216 ls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er----~~d-~i~~~~~~~ 290 (895)
T KOG2076|consen 216 LSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIER----IED-LIRRVAHYF 290 (895)
T ss_pred HHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHH----HHH-HHHHHHHHH
Confidence 999999999998888876432 234457777773 333444454455433221 000 023456667
Q ss_pred HHhCChHHHHHHHHhhccC--------Cc----chHH----HHHHHHHHhcCCC------hhh-----------------
Q psy14927 182 HKAGALHKALDLAFKLTLS--------NS----GLVF----QIKAMKCLLKSGD------TNK----------------- 222 (1074)
Q Consensus 182 ~kaG~~~kAl~l~~~~~~~--------~~----~~~~----~~~a~k~l~~~~~------~~~----------------- 222 (1074)
+..+..++|++.+...-.. |- +++- +-++.+++...-. ...
T Consensus 291 ~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~ 370 (895)
T KOG2076|consen 291 ITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEV 370 (895)
T ss_pred HHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccC
Confidence 7777777777766553211 10 1110 2233333321111 000
Q ss_pred ---------HHHh---hhhcchHHHHHHHHHHHhcCC--CCCChhHHHHHHHHHHccCCHHHHHHHHHHHHhHHHHhhcC
Q psy14927 223 ---------IIFF---AGVSRMKEIYVMAANYLQSSD--WKSQPELLKSIISFYSKGKAPHLLANFYVSCAQVEIDEFGN 288 (1074)
Q Consensus 223 ---------~i~~---a~~~r~~~l~~~aa~yl~~~~--~~~~~~~~~~i~~~Y~k~~~~~~aa~~~~~~a~~ei~e~~~ 288 (1074)
+|.+ -..++..++-.-...+|...+ ...++..+..+.+.|+..+.|.+|-+|+..+...| .|+|
T Consensus 371 ~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~--~~~~ 448 (895)
T KOG2076|consen 371 GKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNRE--GYQN 448 (895)
T ss_pred CCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCc--cccc
Confidence 1000 011122222222233333322 45668999999999999999999999999987776 5666
Q ss_pred ----H-----HHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhhcCChHHHhhHHHH
Q psy14927 289 ----Y-----EKGLGALNEAKRCLLKHNDSMYETLKSSVVEKLAEVEIDEFGNYEKGLGALNE 342 (1074)
Q Consensus 289 ----y-----~~a~~~l~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 342 (1074)
| .+.++-+++|+..+.+.=...|..+-... .+..++-. .|+|++|..-|.+
T Consensus 449 ~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri--~Lasl~~~-~g~~EkalEtL~~ 508 (895)
T KOG2076|consen 449 AFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARI--TLASLYQQ-LGNHEKALETLEQ 508 (895)
T ss_pred hhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhh--hHHHHHHh-cCCHHHHHHHHhc
Confidence 2 23344455555555554444443322111 23445555 5999988876655
No 271
>PRK09126 hypothetical protein; Provisional
Probab=96.67 E-value=0.008 Score=70.50 Aligned_cols=54 Identities=22% Similarity=0.335 Sum_probs=40.5
Q ss_pred HHHHHHH-HhCCCEEEeCceEEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccCCccc
Q psy14927 952 KQFQRIL-GKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPY 1011 (1074)
Q Consensus 952 ~~~~~~l-~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p~ 1011 (1074)
+.+.+.+ +..||+++.++++++++.+++++.|++.+ +.++.+|.||.|.|..+.
T Consensus 114 ~~l~~~~~~~~g~~i~~~~~v~~~~~~~~~~~v~~~~------g~~~~a~~vI~AdG~~S~ 168 (392)
T PRK09126 114 RAAYEAVSQQDGIELLTGTRVTAVRTDDDGAQVTLAN------GRRLTARLLVAADSRFSA 168 (392)
T ss_pred HHHHHHHhhCCCcEEEcCCeEEEEEEcCCeEEEEEcC------CCEEEeCEEEEeCCCCch
Confidence 3333444 45799999999999998776766676654 357999999999997643
No 272
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=96.67 E-value=0.13 Score=60.40 Aligned_cols=52 Identities=6% Similarity=-0.054 Sum_probs=28.3
Q ss_pred hhhcchHHHHHHHHHHHhcC-CCCCChhHHHHHHHHHHccCCHHHHHHHHHHH
Q psy14927 227 AGVSRMKEIYVMAANYLQSS-DWKSQPELLKSIISFYSKGKAPHLLANFYVSC 278 (1074)
Q Consensus 227 a~~~r~~~l~~~aa~yl~~~-~~~~~~~~~~~i~~~Y~k~~~~~~aa~~~~~~ 278 (1074)
+..+-..+.|..|-.|++.. ..+.++...-.+.++|.+.+..++|...|..-
T Consensus 335 grl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 335 GQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33333333355555666553 12223333345677788888887777666543
No 273
>PRK14574 hmsH outer membrane protein; Provisional
Probab=96.65 E-value=0.11 Score=66.09 Aligned_cols=81 Identities=11% Similarity=0.044 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHhhCh--------hhhhhHhhccCCHHHHHHHHH-----hcCChHHHHHHHHHHHh
Q psy14927 51 VLLKWWAQYIESTEDMDLAMKYYEEARDY--------LSMVRVLCFLQDFSRAAELAN-----ASGDTAAAYHLARQYEN 117 (1074)
Q Consensus 51 ~l~~~~a~~~e~~~~~~~A~~~y~~a~d~--------~~~vr~l~~~~~~~~a~~i~~-----~~~~~~~~~~la~~~~~ 117 (1074)
.+. -|++.+-..|++++|+.+++++-|- ..+++++...|++++|.++.+ ++++.+....++..+.+
T Consensus 70 av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~ 148 (822)
T PRK14574 70 QVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQAD 148 (822)
T ss_pred hHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhh
Confidence 344 6777777779999999999998753 222446677799999988876 35666666677777777
Q ss_pred cCChHHHHHHHHHhC
Q psy14927 118 SGQFDEAIHFYSVAG 132 (1074)
Q Consensus 118 ~g~~~~Ai~~y~~a~ 132 (1074)
.|+.++|++.+.++.
T Consensus 149 ~~q~~eAl~~l~~l~ 163 (822)
T PRK14574 149 AGRGGVVLKQATELA 163 (822)
T ss_pred cCCHHHHHHHHHHhc
Confidence 777777766655443
No 274
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=96.65 E-value=0.003 Score=73.25 Aligned_cols=98 Identities=11% Similarity=0.073 Sum_probs=56.3
Q ss_pred hhhhhccccchHHHHHHHhh-------hhhhhccccccccchhhhhhhhh----HHHhhh--------------------
Q psy14927 796 VVLNTLGNCAAVQANYHLAT-------KLFTQAGDKGVKLNLETMMGTKS----AAVKAL-------------------- 844 (1074)
Q Consensus 796 ~VviiGgG~AGl~aA~~la~-------~l~e~~~~~g~~~~~~~~~~~~~----~~~~~l-------------------- 844 (1074)
+|+|||||+||+++|..|++ .++|+.+..++.-.|........ ...+.+
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~~tw~~~~~~~~~~~~~~~~~~v~~~W~~~~v~~~~~~~~l~ 80 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGNHTWSFFDSDLSDAQHAWLADLVQTDWPGYEVRFPKYRRKLK 80 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCcccceecccccchhhhhhhhhhheEeCCCCEEECcchhhhcC
Confidence 38999999999999999985 57777664444211110000000 000000
Q ss_pred -------hhhHHHH-hhhCCeEEEee-eEEEecCCeEEEEeCCCCeeEEEcCeEEEccCCCC
Q psy14927 845 -------TGGIAHL-FKSNKVTQLNG-HGKITGPNTVTVIKSDGSTEEVKTKNILIATGSEV 897 (1074)
Q Consensus 845 -------~~~~~~~-l~~~gV~~~~g-~v~~id~~~~~v~~~~G~~~~i~~d~lIIATG~~p 897 (1074)
...+.+. +...+..+..+ +|+.++++.++ +.+| .++++|.||-|.|..+
T Consensus 81 ~~Y~~I~r~~f~~~l~~~l~~~i~~~~~V~~v~~~~v~--l~dg--~~~~A~~VI~A~G~~s 138 (370)
T TIGR01789 81 TAYRSMTSTRFHEGLLQAFPEGVILGRKAVGLDADGVD--LAPG--TRINARSVIDCRGFKP 138 (370)
T ss_pred CCceEEEHHHHHHHHHHhhcccEEecCEEEEEeCCEEE--ECCC--CEEEeeEEEECCCCCC
Confidence 0011122 22223334444 78888777644 4677 6899999999999775
No 275
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=96.64 E-value=0.0054 Score=75.16 Aligned_cols=84 Identities=13% Similarity=0.123 Sum_probs=58.7
Q ss_pred HhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCe-EEEEEeeccCCCCceEEEcC-EE
Q psy14927 925 WGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDN-ITVTIENVKDPTKKEELSCD-AL 1002 (1074)
Q Consensus 925 l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~-~~v~~~~~~~~g~~~~i~~D-~v 1002 (1074)
+.++|.+|+++...+... ...+..+...+.+.+++.||++++++.++++..+++. +.|.... +++...+.++ .|
T Consensus 186 ~~~~~~~v~~~~~~~~~~-~~~g~~~~~~L~~~~~~~gv~v~~~t~v~~l~~~~g~v~Gv~~~~---~g~~~~i~A~~~V 261 (557)
T PRK07843 186 ALKVGARTLWAKATGKNL-LGMGQALAAGLRIGLQRAGVPVLLNTPLTDLYVEDGRVTGVHAAE---SGEPQLIRARRGV 261 (557)
T ss_pred HHHHHHHHHHHhccCCCc-ccCcHHHHHHHHHHHHcCCCEEEeCCEEEEEEEeCCEEEEEEEEe---CCcEEEEEeceeE
Confidence 455666777765554444 4567778888889999999999999999999875444 3354443 3555678885 68
Q ss_pred EEccC-CcccC
Q psy14927 1003 LVCVG-RRPYT 1012 (1074)
Q Consensus 1003 i~a~G-~~p~~ 1012 (1074)
|+|+| +.+|.
T Consensus 262 IlAtGG~~~n~ 272 (557)
T PRK07843 262 ILASGGFEHNE 272 (557)
T ss_pred EEccCCcCcCH
Confidence 88775 55543
No 276
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=96.62 E-value=0.0024 Score=69.67 Aligned_cols=35 Identities=17% Similarity=0.207 Sum_probs=31.3
Q ss_pred chhhhhhccccchHHHHHHHhh----hhhhhcccccccc
Q psy14927 794 RQVVLNTLGNCAAVQANYHLAT----KLFTQAGDKGVKL 828 (1074)
Q Consensus 794 k~~VviiGgG~AGl~aA~~la~----~l~e~~~~~g~~~ 828 (1074)
+.+|.|||+|.+||+||+.|++ |+||.....||.-
T Consensus 8 r~~IAVIGsGisGLSAA~~Ls~rhdVTLfEA~~rlGGha 46 (447)
T COG2907 8 RRKIAVIGSGISGLSAAWLLSRRHDVTLFEADRRLGGHA 46 (447)
T ss_pred CcceEEEcccchhhhhHHhhhcccceEEEeccccccCcc
Confidence 4459999999999999999999 9999999888854
No 277
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=96.61 E-value=0.0035 Score=79.89 Aligned_cols=90 Identities=12% Similarity=0.039 Sum_probs=62.4
Q ss_pred hhhhhccccchHHHHHHHhh-----hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEeee-EEEecC
Q psy14927 796 VVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGH-GKITGP 869 (1074)
Q Consensus 796 ~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~-v~~id~ 869 (1074)
+|+|||||+.|+.+|..|++ ++++..+... ....+ ......+.+.+++.||+++.++ ++.+..
T Consensus 142 ~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll--------~~~ld---~~~~~~l~~~l~~~GV~v~~~~~v~~i~~ 210 (785)
T TIGR02374 142 KAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLM--------AKQLD---QTAGRLLQRELEQKGLTFLLEKDTVEIVG 210 (785)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCeEEEEccCCchh--------hhhcC---HHHHHHHHHHHHHcCCEEEeCCceEEEEc
Confidence 48999999999999999987 3444332210 00011 2223345667788899999994 666643
Q ss_pred C--eEEEEeCCCCeeEEEcCeEEEccCCCCC
Q psy14927 870 N--TVTVIKSDGSTEEVKTKNILIATGSEVT 898 (1074)
Q Consensus 870 ~--~~~v~~~~G~~~~i~~d~lIIATG~~p~ 898 (1074)
+ ...|++++| .++.+|.||+|+|.+|.
T Consensus 211 ~~~~~~v~~~dG--~~i~~D~Vi~a~G~~Pn 239 (785)
T TIGR02374 211 ATKADRIRFKDG--SSLEADLIVMAAGIRPN 239 (785)
T ss_pred CCceEEEEECCC--CEEEcCEEEECCCCCcC
Confidence 2 345667888 68999999999999984
No 278
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=96.58 E-value=0.011 Score=70.38 Aligned_cols=56 Identities=20% Similarity=0.357 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeE--EEEEeeccCCCCceEEEcCEEEEccCCcc
Q psy14927 948 GEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNI--TVTIENVKDPTKKEELSCDALLVCVGRRP 1010 (1074)
Q Consensus 948 ~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~--~v~~~~~~~~g~~~~i~~D~vi~a~G~~p 1010 (1074)
..+...+.+...+.||+++.++ |..+.-++++. .|.+.+ +.++.+|.+|-|+|++.
T Consensus 154 ~~fd~~L~~~A~~~Gv~~~~g~-V~~v~~~~~g~i~~v~~~~------g~~i~ad~~IDASG~~s 211 (454)
T PF04820_consen 154 AKFDQFLRRHAEERGVEVIEGT-VVDVELDEDGRITAVRLDD------GRTIEADFFIDASGRRS 211 (454)
T ss_dssp HHHHHHHHHHHHHTT-EEEET--EEEEEE-TTSEEEEEEETT------SEEEEESEEEE-SGGG-
T ss_pred HHHHHHHHHHHhcCCCEEEeCE-EEEEEEcCCCCEEEEEECC------CCEEEEeEEEECCCccc
Confidence 3456677777888999999885 66666554553 344333 67899999999999853
No 279
>PRK05868 hypothetical protein; Validated
Probab=96.57 E-value=0.018 Score=67.03 Aligned_cols=44 Identities=16% Similarity=0.333 Sum_probs=36.2
Q ss_pred hCCCEEEeCceEEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccCCc
Q psy14927 960 KQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRR 1009 (1074)
Q Consensus 960 ~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~ 1009 (1074)
..|++++++++++.++.+++++.|++.+ +.++.+|+||-|-|..
T Consensus 116 ~~~v~i~~~~~v~~i~~~~~~v~v~~~d------g~~~~adlvIgADG~~ 159 (372)
T PRK05868 116 QPSVEYLFDDSISTLQDDGDSVRVTFER------AAAREFDLVIGADGLH 159 (372)
T ss_pred cCCcEEEeCCEEEEEEecCCeEEEEECC------CCeEEeCEEEECCCCC
Confidence 4689999999999998777778888766 3468899999998854
No 280
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=96.57 E-value=0.041 Score=54.24 Aligned_cols=62 Identities=21% Similarity=0.213 Sum_probs=51.2
Q ss_pred HHHHHcc-CChhHHHHHHHHhCChHHHHHHHHhhccCCcchHHHHHHHHHHhcCCChhhHHHhhhhcchHHHHHHHHHHH
Q psy14927 165 AATYLET-IEPDKAVLLYHKAGALHKALDLAFKLTLSNSGLVFQIKAMKCLLKSGDTNKIIFFAGVSRMKEIYVMAANYL 243 (1074)
Q Consensus 165 ~A~~~e~-~~~~~A~~ly~kaG~~~kAl~l~~~~~~~~~~~~~~~~a~k~l~~~~~~~~~i~~a~~~r~~~l~~~aa~yl 243 (1074)
++++.++ +-+++|+-+|.+.|++.+|++++++. .+|.+.+++|+....++++|..+++|.
T Consensus 75 ~~~~c~~~~l~~~~~~l~~k~~~~~~Al~~~l~~-------------------~~d~~~a~~~~~~~~~~~lw~~~~~~~ 135 (140)
T smart00299 75 VGKLCEKAKLYEEAVELYKKDGNFKDAIVTLIEH-------------------LGNYEKAIEYFVKQNNPELWAEVLKAL 135 (140)
T ss_pred HHHHHHHcCcHHHHHHHHHhhcCHHHHHHHHHHc-------------------ccCHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 3344444 34678999999999999999999882 489999999999999999999999887
Q ss_pred hc
Q psy14927 244 QS 245 (1074)
Q Consensus 244 ~~ 245 (1074)
..
T Consensus 136 l~ 137 (140)
T smart00299 136 LD 137 (140)
T ss_pred Hc
Confidence 54
No 281
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=96.57 E-value=0.0033 Score=74.01 Aligned_cols=50 Identities=16% Similarity=0.149 Sum_probs=37.8
Q ss_pred hhHHHHhhhCCeEEEee-eEEEec--CCeEEEEeCCCCeeEEEcCeEEEccCCCC
Q psy14927 846 GGIAHLFKSNKVTQLNG-HGKITG--PNTVTVIKSDGSTEEVKTKNILIATGSEV 897 (1074)
Q Consensus 846 ~~~~~~l~~~gV~~~~g-~v~~id--~~~~~v~~~~G~~~~i~~d~lIIATG~~p 897 (1074)
..+.+.+...||+++.+ +++.++ .+.+.+++++| .++.+|.||.|+|..+
T Consensus 115 ~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g--~~~~ad~vI~AdG~~S 167 (403)
T PRK07333 115 NALRKRAEALGIDLREATSVTDFETRDEGVTVTLSDG--SVLEARLLVAADGARS 167 (403)
T ss_pred HHHHHHHHhCCCEEEcCCEEEEEEEcCCEEEEEECCC--CEEEeCEEEEcCCCCh
Confidence 33556666679999988 566664 45566777777 5799999999999875
No 282
>PRK11445 putative oxidoreductase; Provisional
Probab=96.56 E-value=0.0056 Score=70.67 Aligned_cols=44 Identities=16% Similarity=0.192 Sum_probs=31.3
Q ss_pred hCCeEEEee-eEEEec--CCeEEEEe-CCCCeeEEEcCeEEEccCCCC
Q psy14927 854 SNKVTQLNG-HGKITG--PNTVTVIK-SDGSTEEVKTKNILIATGSEV 897 (1074)
Q Consensus 854 ~~gV~~~~g-~v~~id--~~~~~v~~-~~G~~~~i~~d~lIIATG~~p 897 (1074)
..||+++.+ .++.+. .+.+.|+. ++|...++++|.||.|+|+..
T Consensus 110 ~~gv~v~~~~~v~~i~~~~~~~~v~~~~~g~~~~i~a~~vV~AdG~~S 157 (351)
T PRK11445 110 PASVEVYHNSLCRKIWREDDGYHVIFRADGWEQHITARYLVGADGANS 157 (351)
T ss_pred hcCCEEEcCCEEEEEEEcCCEEEEEEecCCcEEEEEeCEEEECCCCCc
Confidence 468999988 455553 34556654 566444799999999999974
No 283
>PRK08013 oxidoreductase; Provisional
Probab=96.55 E-value=0.011 Score=69.59 Aligned_cols=54 Identities=6% Similarity=0.090 Sum_probs=41.0
Q ss_pred HHHHHHHHHHhC-CCEEEeCceEEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccCCc
Q psy14927 950 VAKQFQRILGKQ-GMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRR 1009 (1074)
Q Consensus 950 ~~~~~~~~l~~~-gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~ 1009 (1074)
+...+.+.+.+. ||+++.+++++.++.+++++.+++.+ +.++.+|.||-|-|..
T Consensus 113 l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~------g~~i~a~lvVgADG~~ 167 (400)
T PRK08013 113 IHYALWQKAQQSSDITLLAPAELQQVAWGENEAFLTLKD------GSMLTARLVVGADGAN 167 (400)
T ss_pred HHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeEEEEEcC------CCEEEeeEEEEeCCCC
Confidence 344555555554 89999999999998777777777654 3579999999998854
No 284
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=96.55 E-value=0.003 Score=73.52 Aligned_cols=100 Identities=14% Similarity=0.127 Sum_probs=61.9
Q ss_pred hhhhhccccchHHHHHHH--hh-----hhhhhcccc--ccccch----------hhhhhhh------------hH-----
Q psy14927 796 VVLNTLGNCAAVQANYHL--AT-----KLFTQAGDK--GVKLNL----------ETMMGTK------------SA----- 839 (1074)
Q Consensus 796 ~VviiGgG~AGl~aA~~l--a~-----~l~e~~~~~--g~~~~~----------~~~~~~~------------~~----- 839 (1074)
+|+||||||||+++|+.| ++ .++|+.+.. .....| ....... ..
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~~~~~~~~~~~v~~~w~~~~v~~~~~~~~~~~~~ 80 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFWEKDLGPLDSLVSHRWSGWRVYFPDGSRILIDYP 80 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCcccccccccccchHHHHheecCceEEEeCCCceEEcccc
Confidence 389999999999999999 44 567665443 111100 0000000 00
Q ss_pred ----HHhhhhhhHHHHhhhCCeEEEeeeEEEecCCe--EEEEeCCCCeeEEEcCeEEEccCCCC
Q psy14927 840 ----AVKALTGGIAHLFKSNKVTQLNGHGKITGPNT--VTVIKSDGSTEEVKTKNILIATGSEV 897 (1074)
Q Consensus 840 ----~~~~l~~~~~~~l~~~gV~~~~g~v~~id~~~--~~v~~~~G~~~~i~~d~lIIATG~~p 897 (1074)
....+...+.+.+...|+.++.+.|+.|+... ..|++++| .+++++.||-|+|..+
T Consensus 81 Y~~i~~~~f~~~l~~~~~~~~~~~~~~~V~~i~~~~~~~~v~~~~g--~~i~a~~VvDa~g~~~ 142 (374)
T PF05834_consen 81 YCMIDRADFYEFLLERAAAGGVIRLNARVTSIEETGDGVLVVLADG--RTIRARVVVDARGPSS 142 (374)
T ss_pred eEEEEHHHHHHHHHHHhhhCCeEEEccEEEEEEecCceEEEEECCC--CEEEeeEEEECCCccc
Confidence 00112222444455567888777888887543 46778888 6899999999999654
No 285
>PRK11189 lipoprotein NlpI; Provisional
Probab=96.55 E-value=0.051 Score=61.05 Aligned_cols=83 Identities=13% Similarity=0.090 Sum_probs=60.5
Q ss_pred CCChHHHHHHHHHHHhccCHHHHHHHHHHhhC--------hhhhhhHhhccCCHHHHHHHHHh-----cCChHHHHHHHH
Q psy14927 47 SKDPVLLKWWAQYIESTEDMDLAMKYYEEARD--------YLSMVRVLCFLQDFSRAAELANA-----SGDTAAAYHLAR 113 (1074)
Q Consensus 47 ~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d--------~~~~vr~l~~~~~~~~a~~i~~~-----~~~~~~~~~la~ 113 (1074)
++++..|..+|..+...|+++.|..+|.++=. +.+...+|...|++++|.+..+. +.+.. ......
T Consensus 95 P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~-~~~~~~ 173 (296)
T PRK11189 95 PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPY-RALWLY 173 (296)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHH
Confidence 56788999999999999999999999999733 23444557889999999887762 23321 112223
Q ss_pred HHHhcCChHHHHHHHHH
Q psy14927 114 QYENSGQFDEAIHFYSV 130 (1074)
Q Consensus 114 ~~~~~g~~~~Ai~~y~~ 130 (1074)
.....++.++|++.|.+
T Consensus 174 l~~~~~~~~~A~~~l~~ 190 (296)
T PRK11189 174 LAESKLDPKQAKENLKQ 190 (296)
T ss_pred HHHccCCHHHHHHHHHH
Confidence 45567889999998854
No 286
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=96.53 E-value=0.013 Score=68.30 Aligned_cols=54 Identities=13% Similarity=0.248 Sum_probs=41.6
Q ss_pred HHHHHHHHHHhCC-CEEEeCceEEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccCCc
Q psy14927 950 VAKQFQRILGKQG-MQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRR 1009 (1074)
Q Consensus 950 ~~~~~~~~l~~~g-V~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~ 1009 (1074)
+.+.+.+.+.+.| ++++.++.+++++.+++++.+++.+ +.++.+|.||.|.|..
T Consensus 108 l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~~~~~v~~~~------g~~~~~~~vi~adG~~ 162 (385)
T TIGR01988 108 LQQALWERLQEYPNVTLLCPARVVELPRHSDHVELTLDD------GQQLRARLLVGADGAN 162 (385)
T ss_pred HHHHHHHHHHhCCCcEEecCCeEEEEEecCCeeEEEECC------CCEEEeeEEEEeCCCC
Confidence 4556667777777 9999999999998776766666554 3469999999998854
No 287
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=96.51 E-value=0.019 Score=67.97 Aligned_cols=54 Identities=24% Similarity=0.415 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEE-EEEeeccCCCCceEEEcCEEEEccCCc
Q psy14927 949 EVAKQFQRILGKQGMQFKLGTKVTGASKSGDNIT-VTIENVKDPTKKEELSCDALLVCVGRR 1009 (1074)
Q Consensus 949 ~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~-v~~~~~~~~g~~~~i~~D~vi~a~G~~ 1009 (1074)
.+...+.+.+++.|++++.++.|++++.+++.+. |+.. +.++.+|.||+|+|.-
T Consensus 202 ~~~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~t~-------~~~~~a~~VV~a~G~~ 256 (416)
T PRK00711 202 LFTQRLAAMAEQLGVKFRFNTPVDGLLVEGGRITGVQTG-------GGVITADAYVVALGSY 256 (416)
T ss_pred HHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEEeC-------CcEEeCCEEEECCCcc
Confidence 5566677788889999999999999987655532 3322 2368999999999963
No 288
>PRK07538 hypothetical protein; Provisional
Probab=96.51 E-value=0.016 Score=68.51 Aligned_cols=58 Identities=16% Similarity=0.174 Sum_probs=40.5
Q ss_pred HHHHHHHHHh-CC-CEEEeCceEEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccCCc
Q psy14927 951 AKQFQRILGK-QG-MQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRR 1009 (1074)
Q Consensus 951 ~~~~~~~l~~-~g-V~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~ 1009 (1074)
...+.+.+.+ .| +.+++++++++++.+++++.+.+.+.. +|++.++.+|.||-|-|..
T Consensus 105 ~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~~~~~~~~~~~-~g~~~~~~adlvIgADG~~ 164 (413)
T PRK07538 105 QMLLLDAVRERLGPDAVRTGHRVVGFEQDADVTVVFLGDRA-GGDLVSVRGDVLIGADGIH 164 (413)
T ss_pred HHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEeccC-CCccceEEeeEEEECCCCC
Confidence 3444455443 35 579999999999877666666665532 3456789999999998853
No 289
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=96.51 E-value=0.13 Score=61.50 Aligned_cols=159 Identities=11% Similarity=0.054 Sum_probs=111.4
Q ss_pred hHHHHHHHhhhh---HHHHHHHHHHHHhhhcHHHHHHHHHHhhCHHHHHHHHHHcCCHHHHHHHHHhcCCcHHHHHHHHH
Q psy14927 612 ITKQIILILIIY---RVLLKWWAQYIESTEDMDLAMKYYEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAAYHLARQ 688 (1074)
Q Consensus 612 ~~~~~~~~~~~~---~~l~~~~a~~~e~~~~~~~A~~~y~~ag~~~~ai~~~~~~~~~~~a~~v~~~~~~~~~~~~~A~~ 688 (1074)
++++.+|-|+-. +.++..+|.++.+.+.+-+|...|.--|++.+|+..|..+++|+++..++.+.-+.+ ...+|+-
T Consensus 907 y~~~l~lyrYd~e~Qk~~~nifa~~l~~n~~~~~aa~aye~~gK~~Ea~gay~sA~mwrec~si~~q~~~~e-~~~~AE~ 985 (1243)
T COG5290 907 YDFLLLLYRYDGELQKFKINIFAGNLVDNLYHISAAKAYEVEGKYIEAHGAYDSALMWRECGSISTQEKGYE-FNLCAEL 985 (1243)
T ss_pred hHHHHHHHHhhhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhcchH-HHHHHHh
Confidence 566666666653 378999999999999999999999999999999999999999999999996555444 2333433
Q ss_pred HH--------hcCCHHHHHHHHHHcCCHHHHHHH---hccHHHHHHHHHHhCCcccHHHH--HHHHHHHHHcCCHHHHHH
Q psy14927 689 YE--------NSGQFDEAIHFYSVAGSCGNAVRL---CGQLDAVESIASELNVQSDQDLI--LKCASYFARREHHDRAVQ 755 (1074)
Q Consensus 689 ~~--------~~g~~~~A~~~~~kag~~~~Av~m---a~~w~~a~~~A~~~~~~~~~~~~--~~~a~~~~~~~~~~~Ai~ 755 (1074)
|. +.|+-+.+-..|+ ..+.+|+-| +.++++|+.+|..--....-..+ -.+++.| -+.++.+..
T Consensus 986 L~S~l~ve~R~~~da~~i~l~yl--~N~~eava~~ckgs~y~ea~~~a~~s~~~e~~k~~~~~~LgE~F--g~~~El~ad 1061 (1243)
T COG5290 986 LPSDLLVEFRKAGDAEKILLTYL--ENLYEAVAMDCKGSEYREAFCEAMVSRLVESEKHYEAGQLGEEF--GGKPELAAD 1061 (1243)
T ss_pred hhhhHHHHHHHhcCHHHHHHHHH--hCHHHHHHHHcccccchHHHHHHHHhhhhhHHHHhhhhhhhhhh--cccHHHHHH
Confidence 33 2455544444443 467777777 58888888877664221111111 1222222 356788889
Q ss_pred HHHHhCCHHHHHHHHHHcCC
Q psy14927 756 MYAIARRYDQALSLIQTKHV 775 (1074)
Q Consensus 756 ~y~~ag~~~~Ai~~~~~~~~ 775 (1074)
+|-+.+.-.+.++.|.....
T Consensus 1062 ~~~qikSq~~rlrvlr~kk~ 1081 (1243)
T COG5290 1062 EYVQIKSQGDRLRVLRDKKC 1081 (1243)
T ss_pred HHHHHHHHHHHHHHHhhhhh
Confidence 99999888888888765533
No 290
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=96.49 E-value=0.02 Score=67.53 Aligned_cols=60 Identities=22% Similarity=0.462 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccCCc
Q psy14927 949 EVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRR 1009 (1074)
Q Consensus 949 ~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~ 1009 (1074)
.+...+.+.+.+.|++++.++.|.++..+++.+.+.+.+.. .+++.++.+|.||+|+|..
T Consensus 198 ~~~~~l~~~a~~~G~~i~~~~~V~~i~~~~~~~~v~~~~~~-~~~~~~i~a~~vV~a~G~~ 257 (410)
T PRK12409 198 KFTTGLAAACARLGVQFRYGQEVTSIKTDGGGVVLTVQPSA-EHPSRTLEFDGVVVCAGVG 257 (410)
T ss_pred HHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCC-CCccceEecCEEEECCCcC
Confidence 45566678888999999999999999876666655544311 0013468999999999964
No 291
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=96.49 E-value=0.006 Score=72.56 Aligned_cols=104 Identities=18% Similarity=0.156 Sum_probs=61.8
Q ss_pred chhhhhhccccchHHHHHHHhh-----hhhhhccc----cccccc--------hh-hhhh-----------hhh------
Q psy14927 794 RQVVLNTLGNCAAVQANYHLAT-----KLFTQAGD----KGVKLN--------LE-TMMG-----------TKS------ 838 (1074)
Q Consensus 794 k~~VviiGgG~AGl~aA~~la~-----~l~e~~~~----~g~~~~--------~~-~~~~-----------~~~------ 838 (1074)
+.+|+||||||||+++|+.|++ .++|+... .|+.+. +. .+.. ...
T Consensus 39 ~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~~~k~cgg~i~~~~l~~lgl~~~~~~~~i~~~~~~~p~~~~v~~~~ 118 (450)
T PLN00093 39 KLRVAVIGGGPAGACAAETLAKGGIETFLIERKLDNAKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDIGK 118 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHhHHhhhcCcHHHHHHHhhhheEecCCceEEEecc
Confidence 5579999999999999999999 57776532 122110 00 0000 000
Q ss_pred -----H-----HHhhhhhhHHHHhhhCCeEEEeeeEEEecC-----CeEEEEeCC-------CCeeEEEcCeEEEccCCC
Q psy14927 839 -----A-----AVKALTGGIAHLFKSNKVTQLNGHGKITGP-----NTVTVIKSD-------GSTEEVKTKNILIATGSE 896 (1074)
Q Consensus 839 -----~-----~~~~l~~~~~~~l~~~gV~~~~g~v~~id~-----~~~~v~~~~-------G~~~~i~~d~lIIATG~~ 896 (1074)
. ....+-..+.+...+.|++++.++++.++. +.+.|++.+ |+..++.+|.||-|+|..
T Consensus 119 ~~~~~~~~~~v~R~~~d~~L~~~A~~~Ga~~~~~~v~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~v~a~~VIgADG~~ 198 (450)
T PLN00093 119 TLKPHEYIGMVRREVLDSFLRERAQSNGATLINGLFTRIDVPKDPNGPYVIHYTSYDSGSGAGTPKTLEVDAVIGADGAN 198 (450)
T ss_pred cCCCCCeEEEecHHHHHHHHHHHHHHCCCEEEeceEEEEEeccCCCCcEEEEEEeccccccCCCccEEEeCEEEEcCCcc
Confidence 0 001111234455567799999887766541 234454422 433579999999999986
Q ss_pred C
Q psy14927 897 V 897 (1074)
Q Consensus 897 p 897 (1074)
.
T Consensus 199 S 199 (450)
T PLN00093 199 S 199 (450)
T ss_pred h
Confidence 5
No 292
>PRK07233 hypothetical protein; Provisional
Probab=96.47 E-value=0.014 Score=69.40 Aligned_cols=55 Identities=22% Similarity=0.297 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccCC
Q psy14927 948 GEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGR 1008 (1074)
Q Consensus 948 ~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~ 1008 (1074)
..+.+.+.+.+++.|++|+++++|.+|+.+++++.+...+ +.++.+|.||++++.
T Consensus 198 ~~l~~~l~~~l~~~g~~v~~~~~V~~i~~~~~~~~~~~~~------~~~~~ad~vI~a~p~ 252 (434)
T PRK07233 198 ATLIDALAEAIEARGGEIRLGTPVTSVVIDGGGVTGVEVD------GEEEDFDAVISTAPP 252 (434)
T ss_pred HHHHHHHHHHHHhcCceEEeCCCeeEEEEcCCceEEEEeC------CceEECCEEEECCCH
Confidence 4567778888888999999999999998766654433333 347899999998763
No 293
>KOG1155|consensus
Probab=96.43 E-value=0.25 Score=56.30 Aligned_cols=241 Identities=17% Similarity=0.182 Sum_probs=134.2
Q ss_pred CCChHHHHHHHHHHHhccCHHHHHHHHHH--------hhChhhhhhHhhccCCHHHHHHHHHhc-----CChHHHHHHHH
Q psy14927 47 SKDPVLLKWWAQYIESTEDMDLAMKYYEE--------ARDYLSMVRVLCFLQDFSRAAELANAS-----GDTAAAYHLAR 113 (1074)
Q Consensus 47 ~~~~~l~~~~a~~~e~~~~~~~A~~~y~~--------a~d~~~~vr~l~~~~~~~~a~~i~~~~-----~~~~~~~~la~ 113 (1074)
..++-+..+-|...-.+.++++|+..|+. .+|.+---.+|.-.++-.+..-++.+. =-++.|+.+|+
T Consensus 259 ~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaN 338 (559)
T KOG1155|consen 259 PNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIAN 338 (559)
T ss_pred CccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehh
Confidence 45677888888899999999999999975 344444444455555545555555432 25678999999
Q ss_pred HHHhcCChHHHHHHHHHhCChHHHHHHHHHhCchHHHHHHhhhcCchhHHHHH-HHHccCChhHHHHHHHHhCChHHHHH
Q psy14927 114 QYENSGQFDEAIHFYSVAGSCGNAVRLCKEQALDDQLWNLALSAGPSEQIEAA-TYLETIEPDKAVLLYHKAGALHKALD 192 (1074)
Q Consensus 114 ~~~~~g~~~~Ai~~y~~a~~~~~A~~la~~~~~~~~~~~l~~~~~~~~~~~~A-~~~e~~~~~~A~~ly~kaG~~~kAl~ 192 (1074)
+|.-.++-+.||.||.+|-+.+--- -..+. -.+ +|.|=++...|+.-|.+ |++
T Consensus 339 YYSlr~eHEKAv~YFkRALkLNp~~---------~~aWT-----------LmGHEyvEmKNt~AAi~sYRr------Avd 392 (559)
T KOG1155|consen 339 YYSLRSEHEKAVMYFKRALKLNPKY---------LSAWT-----------LMGHEYVEMKNTHAAIESYRR------AVD 392 (559)
T ss_pred HHHHHHhHHHHHHHHHHHHhcCcch---------hHHHH-----------HhhHHHHHhcccHHHHHHHHH------HHh
Confidence 9999999999999988764433111 11111 133 34444777888888775 344
Q ss_pred HHHhh-----ccC------C-c--chHHHHHHHHHHhcCCChhhHHHhhhhcchHHHHHHHHHHHhcCCCCCChhHHHHH
Q psy14927 193 LAFKL-----TLS------N-S--GLVFQIKAMKCLLKSGDTNKIIFFAGVSRMKEIYVMAANYLQSSDWKSQPELLKSI 258 (1074)
Q Consensus 193 l~~~~-----~~~------~-~--~~~~~~~a~k~l~~~~~~~~~i~~a~~~r~~~l~~~aa~yl~~~~~~~~~~~~~~i 258 (1074)
++=.- ++. + + .++|--+|.+| | ..++.+|+-+++-.+.+ ..+..+
T Consensus 393 i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~--k-------------PnDsRlw~aLG~CY~kl------~~~~eA 451 (559)
T KOG1155|consen 393 INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALEL--K-------------PNDSRLWVALGECYEKL------NRLEEA 451 (559)
T ss_pred cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhc--C-------------CCchHHHHHHHHHHHHh------ccHHHH
Confidence 43220 000 0 0 00111122221 1 22334455555555555 333444
Q ss_pred HHHHHccCCHHHH-HHHHHHHHhHHHHhhcCHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhhcCChHHHh
Q psy14927 259 ISFYSKGKAPHLL-ANFYVSCAQVEIDEFGNYEKGLGALNEAKRCLLKHNDSMYETLKSSVVEKLAEVEIDEFGNYEKGL 337 (1074)
Q Consensus 259 ~~~Y~k~~~~~~a-a~~~~~~a~~ei~e~~~y~~a~~~l~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 337 (1074)
+.+|..+=...+. +.-+..+|+.- ++++++.+|-..+...+......+...+.-....+= +...+.+ +++++.|.
T Consensus 452 iKCykrai~~~dte~~~l~~LakLy-e~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~f--LA~~f~k-~~~~~~As 527 (559)
T KOG1155|consen 452 IKCYKRAILLGDTEGSALVRLAKLY-EELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLF--LAEYFKK-MKDFDEAS 527 (559)
T ss_pred HHHHHHHHhccccchHHHHHHHHHH-HHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHH--HHHHHHh-hcchHHHH
Confidence 4555444333332 24455667776 777777777777777776665445444433222221 3444555 56666555
Q ss_pred h
Q psy14927 338 G 338 (1074)
Q Consensus 338 ~ 338 (1074)
.
T Consensus 528 ~ 528 (559)
T KOG1155|consen 528 Y 528 (559)
T ss_pred H
Confidence 4
No 294
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=96.39 E-value=0.07 Score=61.29 Aligned_cols=126 Identities=17% Similarity=0.200 Sum_probs=97.8
Q ss_pred CCHHHHHHHHHHcCcccchhhhHhhhcHHHHHHHhhc-CCChHHHHHHHHHHHhccCHHHHHHHHHHhhChh--------
Q psy14927 10 GDIDRAIRMFEKAETHQQHVPRMLLENTDKLEKYIIQ-SKDPVLLKWWAQYIESTEDMDLAMKYYEEARDYL-------- 80 (1074)
Q Consensus 10 g~~~eA~~~Ye~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~~-------- 80 (1074)
++|..|++.|+-.. .+ + --..+.+|+.. ++++-++..-++.+...++.++|.+.|.++-+-+
T Consensus 308 a~YG~A~~~~~~~~-~d-~-------A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~ 378 (484)
T COG4783 308 AQYGRALQTYLAGQ-YD-E-------ALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQL 378 (484)
T ss_pred HHHHHHHHHHHhcc-cc-h-------HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHH
Confidence 45666666665544 22 1 12345556655 5788899999999999999999999999976642
Q ss_pred hhhhHhhccCCHHHHHHHHH-----hcCChHHHHHHHHHHHhcCChHHHH----HHHHHhCChHHHHHHHHHh
Q psy14927 81 SMVRVLCFLQDFSRAAELAN-----ASGDTAAAYHLARQYENSGQFDEAI----HFYSVAGSCGNAVRLCKEQ 144 (1074)
Q Consensus 81 ~~vr~l~~~~~~~~a~~i~~-----~~~~~~~~~~la~~~~~~g~~~~Ai----~~y~~a~~~~~A~~la~~~ 144 (1074)
+..+.|...|++.+|.++.+ ++.++.....+|+-|.++|+..+|. +.|-.+|+|++|+..++..
T Consensus 379 ~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A 451 (484)
T COG4783 379 NLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMRA 451 (484)
T ss_pred HHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 34455888999999999877 4678889999999999999998886 4567789999999887765
No 295
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=96.39 E-value=0.0078 Score=74.19 Aligned_cols=61 Identities=10% Similarity=0.219 Sum_probs=44.5
Q ss_pred CHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCe-EEEEEeeccCCCCceEEEc-CEEEEccCCcc
Q psy14927 947 DGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDN-ITVTIENVKDPTKKEELSC-DALLVCVGRRP 1010 (1074)
Q Consensus 947 ~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~-~~v~~~~~~~~g~~~~i~~-D~vi~a~G~~p 1010 (1074)
+..+...+.+.+++.||+++.++.++++..+++. +.|.+.+ ++...++.+ +.||+|+|--.
T Consensus 216 g~~l~~~L~~~a~~~Gv~i~~~t~v~~l~~~~g~v~GV~~~~---~~~~~~i~a~k~VVlAtGg~~ 278 (581)
T PRK06134 216 GNALVARLLKSAEDLGVRIWESAPARELLREDGRVAGAVVET---PGGLQEIRARKGVVLAAGGFP 278 (581)
T ss_pred HHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEEE---CCcEEEEEeCCEEEEcCCCcc
Confidence 3456677788889999999999999998765443 3455544 233456888 99999998654
No 296
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=96.37 E-value=0.021 Score=66.40 Aligned_cols=55 Identities=24% Similarity=0.344 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccCCc
Q psy14927 948 GEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRR 1009 (1074)
Q Consensus 948 ~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~ 1009 (1074)
..+...+.+.+.+.|++++.++.|+++..+++++.|.+.+ + ++.+|.||+|+|..
T Consensus 149 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~------g-~~~a~~vV~A~G~~ 203 (376)
T PRK11259 149 ELAIKAHLRLAREAGAELLFNEPVTAIEADGDGVTVTTAD------G-TYEAKKLVVSAGAW 203 (376)
T ss_pred HHHHHHHHHHHHHCCCEEECCCEEEEEEeeCCeEEEEeCC------C-EEEeeEEEEecCcc
Confidence 4455556677778899999999999998866665554332 2 68999999999964
No 297
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=96.34 E-value=0.023 Score=67.19 Aligned_cols=65 Identities=14% Similarity=0.177 Sum_probs=46.9
Q ss_pred CCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCe-EEEEEeeccCCCCceEEEcCEEEEccCCccc
Q psy14927 946 IDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDN-ITVTIENVKDPTKKEELSCDALLVCVGRRPY 1011 (1074)
Q Consensus 946 ~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~-~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p~ 1011 (1074)
....+...+.+.+++.||+|++++.++++..+++. +.+...+.. +|+...+.+..||+|+|--..
T Consensus 139 ~g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~e~g~V~Gv~~~~~~-~g~~~~i~A~aVIlAtGG~~~ 204 (417)
T PF00890_consen 139 GGKALIEALAKAAEEAGVDIRFNTRVTDLITEDGRVTGVVAENPA-DGEFVRIKAKAVILATGGFGG 204 (417)
T ss_dssp HHHHHHHHHHHHHHHTTEEEEESEEEEEEEEETTEEEEEEEEETT-TCEEEEEEESEEEE----BGG
T ss_pred cHHHHHHHHHHHHhhcCeeeeccceeeeEEEeCCceeEEEEEECC-CCeEEEEeeeEEEeccCcccc
Confidence 34567778888999999999999999999876555 456666322 466678999999999986554
No 298
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=96.34 E-value=0.021 Score=56.74 Aligned_cols=82 Identities=11% Similarity=0.066 Sum_probs=56.4
Q ss_pred hHHHHHHHHHHHhccCHHHHHHHHHHhhCh--------hhhhhHhhccCCHHHHHHHHH-----hcCChHHHHHHHHHHH
Q psy14927 50 PVLLKWWAQYIESTEDMDLAMKYYEEARDY--------LSMVRVLCFLQDFSRAAELAN-----ASGDTAAAYHLARQYE 116 (1074)
Q Consensus 50 ~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~--------~~~vr~l~~~~~~~~a~~i~~-----~~~~~~~~~~la~~~~ 116 (1074)
|.-+..+|..+...|++++|..+|.++=+. ..+..++..+|++++|....+ .+++..+.+.+|..+.
T Consensus 24 p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~ 103 (144)
T PRK15359 24 PETVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLK 103 (144)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 333444566666677777777776653322 334444666666666666554 4678889999999999
Q ss_pred hcCChHHHHHHHHHh
Q psy14927 117 NSGQFDEAIHFYSVA 131 (1074)
Q Consensus 117 ~~g~~~~Ai~~y~~a 131 (1074)
..|++++|++.|.++
T Consensus 104 ~~g~~~eAi~~~~~A 118 (144)
T PRK15359 104 MMGEPGLAREAFQTA 118 (144)
T ss_pred HcCCHHHHHHHHHHH
Confidence 999999999988654
No 299
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=96.33 E-value=0.024 Score=66.08 Aligned_cols=55 Identities=20% Similarity=0.274 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccCCc
Q psy14927 948 GEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRR 1009 (1074)
Q Consensus 948 ~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~ 1009 (1074)
..+...+.+.+++.|++++.++.|.++..+++.+.|.+.+ .++.+|.||+|+|..
T Consensus 145 ~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~~~~~~v~~~~-------~~i~a~~vV~aaG~~ 199 (380)
T TIGR01377 145 EKALRALQELAEAHGATVRDGTKVVEIEPTELLVTVKTTK-------GSYQANKLVVTAGAW 199 (380)
T ss_pred HHHHHHHHHHHHHcCCEEECCCeEEEEEecCCeEEEEeCC-------CEEEeCEEEEecCcc
Confidence 3456667777888999999999999998866665555332 268999999999964
No 300
>PRK07236 hypothetical protein; Provisional
Probab=96.31 E-value=0.0081 Score=70.32 Aligned_cols=40 Identities=18% Similarity=0.025 Sum_probs=30.9
Q ss_pred CeEEEee-eEEEec--CCeEEEEeCCCCeeEEEcCeEEEccCCCC
Q psy14927 856 KVTQLNG-HGKITG--PNTVTVIKSDGSTEEVKTKNILIATGSEV 897 (1074)
Q Consensus 856 gV~~~~g-~v~~id--~~~~~v~~~~G~~~~i~~d~lIIATG~~p 897 (1074)
+++++.| +++.+. .+.++|++++| .++.+|.||.|-|...
T Consensus 112 ~~~i~~~~~v~~i~~~~~~v~v~~~~g--~~~~ad~vIgADG~~S 154 (386)
T PRK07236 112 AERYHLGETLVGFEQDGDRVTARFADG--RRETADLLVGADGGRS 154 (386)
T ss_pred CcEEEcCCEEEEEEecCCeEEEEECCC--CEEEeCEEEECCCCCc
Confidence 4678888 466654 45677888888 6899999999999865
No 301
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=96.30 E-value=0.00099 Score=78.96 Aligned_cols=99 Identities=22% Similarity=0.185 Sum_probs=27.6
Q ss_pred hhhhhccccchHHHHHHHhh-----hhhhhccccccccchhh------------hhhh-hhHHHhhh-------------
Q psy14927 796 VVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLET------------MMGT-KSAAVKAL------------- 844 (1074)
Q Consensus 796 ~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~~------------~~~~-~~~~~~~l------------- 844 (1074)
+||||||||+|+.||+.+++ .|+|+.+.+|+...... ...+ ...+.+.+
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~~~~~~~~~~~~~~~~ 80 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFLNRLRARGGYPQEDRYG 80 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHHHST-------------
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceECCcCChhhcchhhccCCCHHHHHHHHHhhhcccccccccc
Confidence 38999999999999999999 78888887776431110 0000 00111111
Q ss_pred ------------hhhHHHHhhhCCeEEEeee-EEEecCCe---EEEEe--CCCCeeEEEcCeEEEccCC
Q psy14927 845 ------------TGGIAHLFKSNKVTQLNGH-GKITGPNT---VTVIK--SDGSTEEVKTKNILIATGS 895 (1074)
Q Consensus 845 ------------~~~~~~~l~~~gV~~~~g~-v~~id~~~---~~v~~--~~G~~~~i~~d~lIIATG~ 895 (1074)
...+.+.+.+.||++++++ ++.+..+. ..|++ .+| ..++.++.+|=|||-
T Consensus 81 ~~~~~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~~~~i~~V~~~~~~g-~~~i~A~~~IDaTG~ 148 (428)
T PF12831_consen 81 WVSNVPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIRDGGRITGVIVETKSG-RKEIRAKVFIDATGD 148 (428)
T ss_dssp ---------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccc
Confidence 1124555666799999994 54443322 12223 334 578999999999994
No 302
>PRK12370 invasion protein regulator; Provisional
Probab=96.29 E-value=0.036 Score=68.14 Aligned_cols=83 Identities=13% Similarity=0.038 Sum_probs=58.6
Q ss_pred CCChHHHHHHHHHHHhccCHHHHHHHHHHhhC--------hhhhhhHhhccCCHHHHHHHHHh-----cCChHHHHHHHH
Q psy14927 47 SKDPVLLKWWAQYIESTEDMDLAMKYYEEARD--------YLSMVRVLCFLQDFSRAAELANA-----SGDTAAAYHLAR 113 (1074)
Q Consensus 47 ~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d--------~~~~vr~l~~~~~~~~a~~i~~~-----~~~~~~~~~la~ 113 (1074)
++++..|..+|..+...|++++|+.+|.++=. +..+..+|...|++++|....+. +.+......++.
T Consensus 335 P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~ 414 (553)
T PRK12370 335 HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLW 414 (553)
T ss_pred CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHH
Confidence 56788899999999999999999999998432 34566778899999999888763 334334444444
Q ss_pred HHHhcCChHHHHHHHH
Q psy14927 114 QYENSGQFDEAIHFYS 129 (1074)
Q Consensus 114 ~~~~~g~~~~Ai~~y~ 129 (1074)
.+...|++++|++.|.
T Consensus 415 ~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 415 ITYYHTGIDDAIRLGD 430 (553)
T ss_pred HHHhccCHHHHHHHHH
Confidence 3444556666655443
No 303
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=96.29 E-value=0.0015 Score=67.08 Aligned_cols=62 Identities=15% Similarity=0.074 Sum_probs=43.6
Q ss_pred hhhhhccccchHHHHHHHhh-----hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEe
Q psy14927 796 VVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLN 861 (1074)
Q Consensus 796 ~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~ 861 (1074)
+|+|+||||+||+||++|++ .+||+.-.+||.++...+.... --+.......|+..||++..
T Consensus 32 DViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~GGmlf~~----iVv~~~a~~iL~e~gI~ye~ 98 (262)
T COG1635 32 DVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWGGGMLFNK----IVVREEADEILDEFGIRYEE 98 (262)
T ss_pred cEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCcccccccccce----eeecchHHHHHHHhCCccee
Confidence 39999999999999999999 7899988888777555443322 11223345666667776543
No 304
>KOG0292|consensus
Probab=96.27 E-value=0.038 Score=66.73 Aligned_cols=120 Identities=12% Similarity=0.144 Sum_probs=103.9
Q ss_pred hcHHHHHHHhhcCCChHHHHHHHHHHHhccCHHHHHHHHHHhhChhhhhhHhhccCCHHHHHHHHH--h-cCChHHHHHH
Q psy14927 35 ENTDKLEKYIIQSKDPVLLKWWAQYIESTEDMDLAMKYYEEARDYLSMVRVLCFLQDFSRAAELAN--A-SGDTAAAYHL 111 (1074)
Q Consensus 35 ~~~~~~~~~~~~~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~~~~vr~l~~~~~~~~a~~i~~--~-~~~~~~~~~l 111 (1074)
++.+.+-++-.+.+++..|..+++-+..+|+-..|+.||.+-++|+.+--+|.-.|+.++..++.+ + .+|..+.++.
T Consensus 657 gnle~ale~akkldd~d~w~rLge~Al~qgn~~IaEm~yQ~~knfekLsfLYliTgn~eKL~Km~~iae~r~D~~~~~qn 736 (1202)
T KOG0292|consen 657 GNLEVALEAAKKLDDKDVWERLGEEALRQGNHQIAEMCYQRTKNFEKLSFLYLITGNLEKLSKMMKIAEIRNDATGQFQN 736 (1202)
T ss_pred CCHHHHHHHHHhcCcHHHHHHHHHHHHHhcchHHHHHHHHHhhhhhheeEEEEEeCCHHHHHHHHHHHHhhhhhHHHHHH
Confidence 366777788888999999999999999999999999999999999888888999999999988877 3 3455566666
Q ss_pred HHHHHhcCChHHHHHHHHHhCChHHHHHHHHHhCchHHHHHHhhhc
Q psy14927 112 ARQYENSGQFDEAIHFYSVAGSCGNAVRLCKEQALDDQLWNLALSA 157 (1074)
Q Consensus 112 a~~~~~~g~~~~Ai~~y~~a~~~~~A~~la~~~~~~~~~~~l~~~~ 157 (1074)
|-| .||+++=+..+..+|...-|--.|..||+.+..-.+..+.
T Consensus 737 alY---l~dv~ervkIl~n~g~~~laylta~~~G~~~~ae~l~ee~ 779 (1202)
T KOG0292|consen 737 ALY---LGDVKERVKILENGGQLPLAYLTAAAHGLEDQAEKLGEEL 779 (1202)
T ss_pred HHH---hccHHHHHHHHHhcCcccHHHHHHhhcCcHHHHHHHHHhh
Confidence 655 5899999999999999999999999999988887776543
No 305
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=96.25 E-value=0.025 Score=66.26 Aligned_cols=53 Identities=17% Similarity=0.355 Sum_probs=39.3
Q ss_pred HHHHHHHHHHhC-CCEEEeCceEEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccCCc
Q psy14927 950 VAKQFQRILGKQ-GMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRR 1009 (1074)
Q Consensus 950 ~~~~~~~~l~~~-gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~ 1009 (1074)
+.+.+.+.+.+. ++. +.++++.+++.+++++.|++.+ +.++.+|.||.|.|..
T Consensus 113 l~~~L~~~~~~~~~~~-~~~~~v~~i~~~~~~~~v~~~~------g~~~~a~~vI~AdG~~ 166 (388)
T PRK07494 113 LNRALEARVAELPNIT-RFGDEAESVRPREDEVTVTLAD------GTTLSARLVVGADGRN 166 (388)
T ss_pred HHHHHHHHHhcCCCcE-EECCeeEEEEEcCCeEEEEECC------CCEEEEeEEEEecCCC
Confidence 445566666665 466 7799999998777777776544 3579999999999975
No 306
>KOG1346|consensus
Probab=96.22 E-value=0.0056 Score=68.01 Aligned_cols=101 Identities=14% Similarity=0.133 Sum_probs=67.9
Q ss_pred chhhhhhccccchHHHHHHHhhhhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEee-eEEE--ecCC
Q psy14927 794 RQVVLNTLGNCAAVQANYHLATKLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNG-HGKI--TGPN 870 (1074)
Q Consensus 794 k~~VviiGgG~AGl~aA~~la~~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g-~v~~--id~~ 870 (1074)
++.|-|||+|+-|...|..|++ -+.....--.++ ++.-..-..-.++.+..+..+.+++.||+++.+ .|.. .+..
T Consensus 347 k~siTIiGnGflgSELacsl~r-k~r~~g~eV~Qv-F~Ek~nm~kiLPeyls~wt~ekir~~GV~V~pna~v~sv~~~~~ 424 (659)
T KOG1346|consen 347 KQSITIIGNGFLGSELACSLKR-KYRNEGVEVHQV-FEEKYNMEKILPEYLSQWTIEKIRKGGVDVRPNAKVESVRKCCK 424 (659)
T ss_pred cceEEEEcCcchhhhHHHHHHH-hhhccCcEEEEe-ecccCChhhhhHHHHHHHHHHHHHhcCceeccchhhhhhhhhcc
Confidence 4458899999999999999998 221111000011 110001111223556666778888999999998 3443 3457
Q ss_pred eEEEEeCCCCeeEEEcCeEEEccCCCCC
Q psy14927 871 TVTVIKSDGSTEEVKTKNILIATGSEVT 898 (1074)
Q Consensus 871 ~~~v~~~~G~~~~i~~d~lIIATG~~p~ 898 (1074)
++.+.++|| .++..|.||+|+|..|.
T Consensus 425 nl~lkL~dG--~~l~tD~vVvavG~ePN 450 (659)
T KOG1346|consen 425 NLVLKLSDG--SELRTDLVVVAVGEEPN 450 (659)
T ss_pred ceEEEecCC--CeeeeeeEEEEecCCCc
Confidence 788889999 88999999999999984
No 307
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=96.22 E-value=0.0068 Score=71.06 Aligned_cols=47 Identities=19% Similarity=0.203 Sum_probs=34.0
Q ss_pred HHHhhhC-CeEEEee-eEEEec--CCeEEEEeCCCCeeEEEcCeEEEccCCCC
Q psy14927 849 AHLFKSN-KVTQLNG-HGKITG--PNTVTVIKSDGSTEEVKTKNILIATGSEV 897 (1074)
Q Consensus 849 ~~~l~~~-gV~~~~g-~v~~id--~~~~~v~~~~G~~~~i~~d~lIIATG~~p 897 (1074)
.+.+... ||+++.+ +++.+. .+.+.|.+++| .++++|.||.|.|...
T Consensus 119 ~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g--~~~~a~~vI~AdG~~S 169 (391)
T PRK08020 119 WQALEAHPNVTLRCPASLQALQRDDDGWELTLADG--EEIQAKLVIGADGANS 169 (391)
T ss_pred HHHHHcCCCcEEEcCCeeEEEEEcCCeEEEEECCC--CEEEeCEEEEeCCCCc
Confidence 3334444 8999888 566553 44566777777 5799999999999875
No 308
>PRK06753 hypothetical protein; Provisional
Probab=96.21 E-value=0.0068 Score=70.58 Aligned_cols=40 Identities=20% Similarity=0.158 Sum_probs=30.4
Q ss_pred CeEEEee-eEEEec--CCeEEEEeCCCCeeEEEcCeEEEccCCCC
Q psy14927 856 KVTQLNG-HGKITG--PNTVTVIKSDGSTEEVKTKNILIATGSEV 897 (1074)
Q Consensus 856 gV~~~~g-~v~~id--~~~~~v~~~~G~~~~i~~d~lIIATG~~p 897 (1074)
++++++| +++.++ .+.+.|++++| .++.+|.||-|.|.+.
T Consensus 110 ~~~i~~~~~v~~i~~~~~~v~v~~~~g--~~~~~~~vigadG~~S 152 (373)
T PRK06753 110 EDAIFTGKEVTKIENETDKVTIHFADG--ESEAFDLCIGADGIHS 152 (373)
T ss_pred CceEEECCEEEEEEecCCcEEEEECCC--CEEecCEEEECCCcch
Confidence 4567777 566664 45567778888 6789999999999865
No 309
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=96.20 E-value=0.032 Score=62.49 Aligned_cols=86 Identities=16% Similarity=0.175 Sum_probs=64.3
Q ss_pred hhHHhhcCCcEEEEecCCc---cC-------CCCC-----CHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEEe
Q psy14927 922 GSVWGRLGAEVTAIEFMNA---IG-------GMGI-----DGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIE 986 (1074)
Q Consensus 922 A~~l~~~G~~Vtlv~~~~~---~~-------~~~~-----~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~ 986 (1074)
|..|.+.|.+|+|+++.+. +. .|.+ +.++...+.+.+++.|+++++ +.+..++..++...+.+.
T Consensus 16 A~~l~~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~-~~v~~v~~~~~~~~v~~~ 94 (300)
T TIGR01292 16 AIYAARANLKTLIIEGMEPGGQLTTTTEVENYPGFPEGISGPELMEKMKEQAVKFGAEIIY-EEVIKVDLSDRPFKVKTG 94 (300)
T ss_pred HHHHHHCCCCEEEEeccCCCcceeecccccccCCCCCCCChHHHHHHHHHHHHHcCCeEEE-EEEEEEEecCCeeEEEeC
Confidence 5667788999999997651 10 0222 357778888889999999998 789999886665556543
Q ss_pred eccCCCCceEEEcCEEEEccCCcccCCc
Q psy14927 987 NVKDPTKKEELSCDALLVCVGRRPYTHN 1014 (1074)
Q Consensus 987 ~~~~~g~~~~i~~D~vi~a~G~~p~~~~ 1014 (1074)
+ +.++.+|.+|+|+|..|+...
T Consensus 95 ~------~~~~~~d~liiAtG~~~~~~~ 116 (300)
T TIGR01292 95 D------GKEYTAKAVIIATGASARKLG 116 (300)
T ss_pred C------CCEEEeCEEEECCCCCcccCC
Confidence 3 357999999999999887543
No 310
>KOG1155|consensus
Probab=96.19 E-value=0.05 Score=61.75 Aligned_cols=132 Identities=20% Similarity=0.227 Sum_probs=94.1
Q ss_pred HHhhhcCCHHHHHHHHHHcCccc---chh----hhHh--hhcHHHHHHHhhc-----CCChHHHHHHHHHHHhccCHHHH
Q psy14927 4 EETMKNGDIDRAIRMFEKAETHQ---QHV----PRML--LENTDKLEKYIIQ-----SKDPVLLKWWAQYIESTEDMDLA 69 (1074)
Q Consensus 4 ~~~~~~g~~~eA~~~Ye~~~~~~---~~~----~~~~--~~~~~~~~~~~~~-----~~~~~l~~~~a~~~e~~~~~~~A 69 (1074)
-|..++++...|+.-|..+-... .++ -++| +++..-+-=|.++ +.|+.||..+|+-++..+++++|
T Consensus 372 HEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eA 451 (559)
T KOG1155|consen 372 HEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEA 451 (559)
T ss_pred HHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHH
Confidence 36788999999999999876332 111 1111 2333333233333 78999999999999999999999
Q ss_pred HHHHHHh---hCh--hhhhhH---hhccCCHHHHHHHHHh----c--------CChHHHHHHHHHHHhcCChHHHHHHHH
Q psy14927 70 MKYYEEA---RDY--LSMVRV---LCFLQDFSRAAELANA----S--------GDTAAAYHLARQYENSGQFDEAIHFYS 129 (1074)
Q Consensus 70 ~~~y~~a---~d~--~~~vr~---l~~~~~~~~a~~i~~~----~--------~~~~~~~~la~~~~~~g~~~~Ai~~y~ 129 (1074)
.+||.+| ||. ...+|+ +.++++.++|...... . ....+...||++|.+.+++++|-.+-.
T Consensus 452 iKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~ 531 (559)
T KOG1155|consen 452 IKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYAT 531 (559)
T ss_pred HHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHH
Confidence 9999884 666 344454 7888998888775431 1 123466789999999999999988877
Q ss_pred HhCChH
Q psy14927 130 VAGSCG 135 (1074)
Q Consensus 130 ~a~~~~ 135 (1074)
+.-+.+
T Consensus 532 ~~~~~~ 537 (559)
T KOG1155|consen 532 LVLKGE 537 (559)
T ss_pred HHhcCC
Confidence 777665
No 311
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=96.19 E-value=0.013 Score=68.38 Aligned_cols=33 Identities=27% Similarity=0.319 Sum_probs=30.2
Q ss_pred hhhhhccccchHHHHHHHhh-------hhhhhcccccccc
Q psy14927 796 VVLNTLGNCAAVQANYHLAT-------KLFTQAGDKGVKL 828 (1074)
Q Consensus 796 ~VviiGgG~AGl~aA~~la~-------~l~e~~~~~g~~~ 828 (1074)
+|+|||||.+||+||++|.+ ++||+.+..||.+
T Consensus 2 ~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l 41 (444)
T COG1232 2 KIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLL 41 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceE
Confidence 48999999999999999999 7999999998865
No 312
>PRK07045 putative monooxygenase; Reviewed
Probab=96.15 E-value=0.042 Score=64.37 Aligned_cols=54 Identities=17% Similarity=0.308 Sum_probs=38.4
Q ss_pred HHHHHHHHHH-hCCCEEEeCceEEEEEecCCeE--EEEEeeccCCCCceEEEcCEEEEccCCc
Q psy14927 950 VAKQFQRILG-KQGMQFKLGTKVTGASKSGDNI--TVTIENVKDPTKKEELSCDALLVCVGRR 1009 (1074)
Q Consensus 950 ~~~~~~~~l~-~~gV~i~~~~~v~~i~~~~~~~--~v~~~~~~~~g~~~~i~~D~vi~a~G~~ 1009 (1074)
+.+.+.+.+. ..|++++++++++.++.++++. .|++.+ ++++.+|.||-|.|..
T Consensus 108 l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~------g~~~~~~~vIgADG~~ 164 (388)
T PRK07045 108 LRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSD------GERVAPTVLVGADGAR 164 (388)
T ss_pred HHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCC------CCEEECCEEEECCCCC
Confidence 4455556654 4689999999999998765553 455433 3578999999888754
No 313
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=96.14 E-value=0.16 Score=63.37 Aligned_cols=151 Identities=11% Similarity=0.057 Sum_probs=110.2
Q ss_pred HHHHHHHHHHHHHHhhhCccchhhHHHHHHHhh--hhHHHHHHHHHHHHhhhcHHHHHHHHHHh-----hCHHHH---HH
Q psy14927 589 SAAVKALTGGIAHLFKSNKALKIITKQIILILI--IYRVLLKWWAQYIESTEDMDLAMKYYEEA-----RDYLSM---VR 658 (1074)
Q Consensus 589 ~~~i~~l~~~~~~~l~~~~i~~~~~~~~~~~~~--~~~~l~~~~a~~~e~~~~~~~A~~~y~~a-----g~~~~a---i~ 658 (1074)
+.+..++...++..-.-.....+++++.++.|- .+++.+.-.|......|++++|+.++..+ +...-. ..
T Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~ 128 (694)
T PRK15179 49 RELLQQARQVLERHAAVHKPAAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLR 128 (694)
T ss_pred HHHHHHHHHHHHHhhhhcchHhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHH
Confidence 334444444444333333334457777775543 35789999999999999999999999988 333333 34
Q ss_pred HHHHcCCHHHHHHHHH-----hcCCcHHHHHHHHHHHhcCCHHHHHHHHHHcCCHHHHHHHhccHHHHHHHHHHhCCccc
Q psy14927 659 VLCFLQDFSRAAELAN-----ASGDTAAAYHLARQYENSGQFDEAIHFYSVAGSCGNAVRLCGQLDAVESIASELNVQSD 733 (1074)
Q Consensus 659 ~~~~~~~~~~a~~v~~-----~~~~~~~~~~~A~~~~~~g~~~~A~~~~~kag~~~~Av~ma~~w~~a~~~A~~~~~~~~ 733 (1074)
.....+.+++|+..++ ..++.+.....|..|.+.|+|++|+.+|-++- + .+ +..
T Consensus 129 ~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~------------------~-~~--p~~ 187 (694)
T PRK15179 129 GVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLS------------------R-QH--PEF 187 (694)
T ss_pred HHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHH------------------h-cC--CCc
Confidence 4789999999998884 23334444488999999999999999998762 2 22 355
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy14927 734 QDLILKCASYFARREHHDRAVQMYAIA 760 (1074)
Q Consensus 734 ~~~~~~~a~~~~~~~~~~~Ai~~y~~a 760 (1074)
++.++++|..|-..|+.+.|..+|+++
T Consensus 188 ~~~~~~~a~~l~~~G~~~~A~~~~~~a 214 (694)
T PRK15179 188 ENGYVGWAQSLTRRGALWRARDVLQAG 214 (694)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 588899999999999999999999988
No 314
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=96.11 E-value=0.01 Score=71.93 Aligned_cols=46 Identities=20% Similarity=0.172 Sum_probs=34.3
Q ss_pred CCCeeeCCCCC------CCCCCEEEecccCCCC--------CcHHHHHHHHHHHHHHhhC
Q psy14927 1027 KGRVPVNSRFQ------TVIPNIFAIGDCIHGP--------MLAHKAEDEGIVCVEGIAG 1072 (1074)
Q Consensus 1027 ~G~I~Vd~~~~------ts~~~IyAiGD~~~~~--------~~~~~A~~~G~~aA~~I~~ 1072 (1074)
.|.|.+|...| +.+||+||+|.++++. .....|+-.|++|+.+++.
T Consensus 442 ~GGl~in~~~qVld~~g~pI~GLYAaGe~~gg~~g~~~~~G~~l~~~~~~GriAg~~aa~ 501 (506)
T PRK06481 442 MGGVKINTNTEVLKKDGSPITGLYAAGEVTGGLHGENRIGGNSVADIIIFGRQAGTQSAE 501 (506)
T ss_pred ccCeEECCCceEEcCCCCEeCCeeeceeccccCCCCCCCchhhHHHHHHHHHHHHHHHHH
Confidence 46677777766 4799999999987531 2356788899999998764
No 315
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=96.11 E-value=0.19 Score=54.93 Aligned_cols=127 Identities=14% Similarity=0.157 Sum_probs=77.4
Q ss_pred HHHHHHHHHhhhcHHHHHHHHHHhhC--------HHHHHHHHHHcCCHHHHHHHHH---hcCCcHHHHHHHHHHH-----
Q psy14927 627 LKWWAQYIESTEDMDLAMKYYEEARD--------YLSMVRVLCFLQDFSRAAELAN---ASGDTAAAYHLARQYE----- 690 (1074)
Q Consensus 627 ~~~~a~~~e~~~~~~~A~~~y~~ag~--------~~~ai~~~~~~~~~~~a~~v~~---~~~~~~~~~~~A~~~~----- 690 (1074)
....|+=....|=+|-||+.|..=-| ...-+.+|..-.+|++|+++++ ..++.....+||.++.
T Consensus 110 l~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~ 189 (389)
T COG2956 110 LQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQ 189 (389)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHH
Confidence 44567777788899999999987644 3344567889999999999996 4455555555555554
Q ss_pred --hcCCHHHHHHHHHHcCC-----HHHHHHH------hccHHHHHHH---HHHhCCcccHHHHHHHHHHHHHcCCHHHH
Q psy14927 691 --NSGQFDEAIHFYSVAGS-----CGNAVRL------CGQLDAVESI---ASELNVQSDQDLILKCASYFARREHHDRA 753 (1074)
Q Consensus 691 --~~g~~~~A~~~~~kag~-----~~~Av~m------a~~w~~a~~~---A~~~~~~~~~~~~~~~a~~~~~~~~~~~A 753 (1074)
...+++.|...+.||-. ..--|.+ -+++..|.+. +.+++|+-.++++-.+..-+...|++...
T Consensus 190 ~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~ 268 (389)
T COG2956 190 ALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEG 268 (389)
T ss_pred HhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHH
Confidence 45678888888888722 2222222 2555555433 33344555555554444443344444333
No 316
>KOG0547|consensus
Probab=96.07 E-value=0.054 Score=61.85 Aligned_cols=143 Identities=21% Similarity=0.266 Sum_probs=106.8
Q ss_pred cCCHHHHHHHHHHcCcccchhhhHhhh---------cHHHHHHHhh----c-CCChHHHHHHHHHHHhccCHHHHHHHHH
Q psy14927 9 NGDIDRAIRMFEKAETHQQHVPRMLLE---------NTDKLEKYII----Q-SKDPVLLKWWAQYIESTEDMDLAMKYYE 74 (1074)
Q Consensus 9 ~g~~~eA~~~Ye~~~~~~~~~~~~~~~---------~~~~~~~~~~----~-~~~~~l~~~~a~~~e~~~~~~~A~~~y~ 74 (1074)
.++|++|+.=|+|+-..+.+-.--|++ .+........ + ++.|+....+|+.+..+++|+.|.++|-
T Consensus 407 L~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD 486 (606)
T KOG0547|consen 407 LQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYD 486 (606)
T ss_pred HHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHH
Confidence 357899999999998887665333321 2222222222 2 7889999999999999999999999999
Q ss_pred HhhChhhh---------------hhHhhccCCHHHHHHHHHh-----cCChHHHHHHHHHHHhcCChHHHHHHHHHhCCh
Q psy14927 75 EARDYLSM---------------VRVLCFLQDFSRAAELANA-----SGDTAAAYHLARQYENSGQFDEAIHFYSVAGSC 134 (1074)
Q Consensus 75 ~a~d~~~~---------------vr~l~~~~~~~~a~~i~~~-----~~~~~~~~~la~~~~~~g~~~~Ai~~y~~a~~~ 134 (1074)
.|-+.... +-++.-.++++.|.++.+. +++.-+---||.+-.++|++++||++|
T Consensus 487 ~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielF------ 560 (606)
T KOG0547|consen 487 KAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELF------ 560 (606)
T ss_pred HHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHH------
Confidence 99887654 1123346789999999884 445556668999999999999999996
Q ss_pred HHHHHHHHHhCchHHHHHHhhhc
Q psy14927 135 GNAVRLCKEQALDDQLWNLALSA 157 (1074)
Q Consensus 135 ~~A~~la~~~~~~~~~~~l~~~~ 157 (1074)
++++.||+....|-+..+++.-+
T Consensus 561 Eksa~lArt~~E~~~a~s~aeAA 583 (606)
T KOG0547|consen 561 EKSAQLARTESEMVHAYSLAEAA 583 (606)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHH
Confidence 67789999986666667666443
No 317
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=96.05 E-value=0.073 Score=52.87 Aligned_cols=116 Identities=21% Similarity=0.173 Sum_probs=81.1
Q ss_pred CCHHHHHHHHHHcCcccchhhhHhhhcHH----HHHHHhhcCC-C---hHHHHHHHHHHHhccCHHHHHHHHHHhhCh--
Q psy14927 10 GDIDRAIRMFEKAETHQQHVPRMLLENTD----KLEKYIIQSK-D---PVLLKWWAQYIESTEDMDLAMKYYEEARDY-- 79 (1074)
Q Consensus 10 g~~~eA~~~Ye~~~~~~~~~~~~~~~~~~----~~~~~~~~~~-~---~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~-- 79 (1074)
.+.++|...|+++...- -.+++. .++.++.+.. + ..-....|+.+...|++++|...|..+-+-
T Consensus 6 ~~~~~a~~~y~~~~~~~------~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~ 79 (145)
T PF09976_consen 6 QQAEQASALYEQALQAL------QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAP 79 (145)
T ss_pred HHHHHHHHHHHHHHHHH------HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCC
Confidence 34566777777665221 112343 2444555532 3 234555699999999999999999886543
Q ss_pred ---------hhhhhHhhccCCHHHHHHHHHhcC----ChHHHHHHHHHHHhcCChHHHHHHHHHh
Q psy14927 80 ---------LSMVRVLCFLQDFSRAAELANASG----DTAAAYHLARQYENSGQFDEAIHFYSVA 131 (1074)
Q Consensus 80 ---------~~~vr~l~~~~~~~~a~~i~~~~~----~~~~~~~la~~~~~~g~~~~Ai~~y~~a 131 (1074)
..+.+++...|++++|....+... ........|..|...|++++|+..|.++
T Consensus 80 d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 80 DPELKPLARLRLARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 235666888999999999987432 2235668899999999999999999875
No 318
>PRK06175 L-aspartate oxidase; Provisional
Probab=96.04 E-value=0.059 Score=64.01 Aligned_cols=59 Identities=10% Similarity=0.145 Sum_probs=40.9
Q ss_pred CHHHHHHHHHHHHh-CCCEEEeCceEEEEEecCCe-EEEEEeeccCCCCceEEEcCEEEEccCC
Q psy14927 947 DGEVAKQFQRILGK-QGMQFKLGTKVTGASKSGDN-ITVTIENVKDPTKKEELSCDALLVCVGR 1008 (1074)
Q Consensus 947 ~~~~~~~~~~~l~~-~gV~i~~~~~v~~i~~~~~~-~~v~~~~~~~~g~~~~i~~D~vi~a~G~ 1008 (1074)
.+.+...+.+.+++ .||++++++.+..+..+++. ..+...+ +++...+.++.||+|+|-
T Consensus 127 g~~l~~~L~~~~~~~~gV~i~~~t~v~~Li~~~~~v~Gv~~~~---~g~~~~i~Ak~VILAtGG 187 (433)
T PRK06175 127 GKKVEKILLKKVKKRKNITIIENCYLVDIIENDNTCIGAICLK---DNKQINIYSKVTILATGG 187 (433)
T ss_pred hHHHHHHHHHHHHhcCCCEEEECcEeeeeEecCCEEEEEEEEE---CCcEEEEEcCeEEEccCc
Confidence 34566667666664 59999999999998754443 3333333 243457899999999985
No 319
>KOG1336|consensus
Probab=95.98 E-value=0.012 Score=67.39 Aligned_cols=90 Identities=10% Similarity=0.043 Sum_probs=67.1
Q ss_pred hhhhhccccchHHHHHHHhh-----hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEeeeE-EEec-
Q psy14927 796 VVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHG-KITG- 868 (1074)
Q Consensus 796 ~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~v-~~id- 868 (1074)
+||++|||+.|+.+|-.+.. |++...+.+- .+-+...+...+..++.+.||+|+.+++ ..++
T Consensus 215 ~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~~-----------~~lf~~~i~~~~~~y~e~kgVk~~~~t~~s~l~~ 283 (478)
T KOG1336|consen 215 KVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWLL-----------PRLFGPSIGQFYEDYYENKGVKFYLGTVVSSLEG 283 (478)
T ss_pred eEEEECchHHHHHHHHHHHhcCceEEEEccCccch-----------hhhhhHHHHHHHHHHHHhcCeEEEEecceeeccc
Confidence 49999999999999988877 4444333221 1123356666788999999999999963 3443
Q ss_pred ---CCeEEEEeCCCCeeEEEcCeEEEccCCCCC
Q psy14927 869 ---PNTVTVIKSDGSTEEVKTKNILIATGSEVT 898 (1074)
Q Consensus 869 ---~~~~~v~~~~G~~~~i~~d~lIIATG~~p~ 898 (1074)
.+...|.+.+| .++.+|-||+.+|++|.
T Consensus 284 ~~~Gev~~V~l~dg--~~l~adlvv~GiG~~p~ 314 (478)
T KOG1336|consen 284 NSDGEVSEVKLKDG--KTLEADLVVVGIGIKPN 314 (478)
T ss_pred CCCCcEEEEEeccC--CEeccCeEEEeeccccc
Confidence 34567788898 89999999999999984
No 320
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=95.97 E-value=0.045 Score=65.54 Aligned_cols=60 Identities=10% Similarity=0.212 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHhCCCEEEeCceEEEEEecCCe--EEEEEeeccCCCCceEEEcCEEEEccCC
Q psy14927 948 GEVAKQFQRILGKQGMQFKLGTKVTGASKSGDN--ITVTIENVKDPTKKEELSCDALLVCVGR 1008 (1074)
Q Consensus 948 ~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~--~~v~~~~~~~~g~~~~i~~D~vi~a~G~ 1008 (1074)
..+.+.+.+.+++.|++|++++.|++|...+++ +.|++.+.. .++..++.+|.||++++.
T Consensus 213 ~~l~~~l~~~l~~~g~~i~l~~~V~~I~~~~~~~v~~v~~~~~~-~~~~~~~~a~~VI~a~p~ 274 (453)
T TIGR02731 213 ERLCQPIVDYITSRGGEVRLNSRLKEIVLNEDGSVKHFVLADGE-GQRRFEVTADAYVSAMPV 274 (453)
T ss_pred HHHHHHHHHHHHhcCCEEeCCCeeEEEEECCCCCEEEEEEecCC-CCceeEEECCEEEEcCCH
Confidence 456677788888899999999999999754333 345554411 011126899999999864
No 321
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=95.95 E-value=0.008 Score=70.19 Aligned_cols=48 Identities=15% Similarity=0.189 Sum_probs=35.4
Q ss_pred HHHHhhh-CCeEEEee-eEEEec--CCeEEEEeCCCCeeEEEcCeEEEccCCCC
Q psy14927 848 IAHLFKS-NKVTQLNG-HGKITG--PNTVTVIKSDGSTEEVKTKNILIATGSEV 897 (1074)
Q Consensus 848 ~~~~l~~-~gV~~~~g-~v~~id--~~~~~v~~~~G~~~~i~~d~lIIATG~~p 897 (1074)
+.+.+.. .|++++.+ +++.+. .+.+++++++| .++.+|.||.|.|...
T Consensus 111 L~~~~~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~g--~~~~ad~vV~AdG~~S 162 (382)
T TIGR01984 111 LLSRLALLTNIQLYCPARYKEIIRNQDYVRVTLDNG--QQLRAKLLIAADGANS 162 (382)
T ss_pred HHHHHHhCCCcEEEcCCeEEEEEEcCCeEEEEECCC--CEEEeeEEEEecCCCh
Confidence 3344455 49999987 577663 45677777777 5799999999999864
No 322
>PLN02661 Putative thiazole synthesis
Probab=95.93 E-value=0.01 Score=67.05 Aligned_cols=32 Identities=19% Similarity=0.227 Sum_probs=26.7
Q ss_pred hhhhhhccccchHHHHHHHhh------hhhhhcccccc
Q psy14927 795 QVVLNTLGNCAAVQANYHLAT------KLFTQAGDKGV 826 (1074)
Q Consensus 795 ~~VviiGgG~AGl~aA~~la~------~l~e~~~~~g~ 826 (1074)
.+|+|||||++|+.||+.|++ +++|+....|+
T Consensus 93 ~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GG 130 (357)
T PLN02661 93 TDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGG 130 (357)
T ss_pred CCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCccccc
Confidence 359999999999999999985 67888766554
No 323
>PRK04841 transcriptional regulator MalT; Provisional
Probab=95.92 E-value=6 Score=51.91 Aligned_cols=133 Identities=18% Similarity=0.126 Sum_probs=83.5
Q ss_pred hhhcCCHHHHHHHHHHcCcccchhhhHhh---------hcHHHHHHHhhcC------CChHHHHHHHHHHHhccCHHHHH
Q psy14927 6 TMKNGDIDRAIRMFEKAETHQQHVPRMLL---------ENTDKLEKYIIQS------KDPVLLKWWAQYIESTEDMDLAM 70 (1074)
Q Consensus 6 ~~~~g~~~eA~~~Ye~~~~~~~~~~~~~~---------~~~~~~~~~~~~~------~~~~l~~~~a~~~e~~~~~~~A~ 70 (1074)
+...|++.+|+.++..++..+ .+.+++. +.+..+..++... .+|.+...++-.+...|++++|.
T Consensus 351 ~~~~g~~~~Al~~a~~a~d~~-~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~ 429 (903)
T PRK04841 351 WLAQGFPSEAIHHALAAGDAQ-LLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVN 429 (903)
T ss_pred HHHCCCHHHHHHHHHHCCCHH-HHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHH
Confidence 567889999999999988775 4444432 2344455555442 34555555666667788999988
Q ss_pred HHHHHhhChhh-----------------hhhHhhccCCHHHHHHHHHhc------CCh----HHHHHHHHHHHhcCChHH
Q psy14927 71 KYYEEARDYLS-----------------MVRVLCFLQDFSRAAELANAS------GDT----AAAYHLARQYENSGQFDE 123 (1074)
Q Consensus 71 ~~y~~a~d~~~-----------------~vr~l~~~~~~~~a~~i~~~~------~~~----~~~~~la~~~~~~g~~~~ 123 (1074)
.++..+.+... ...++...|++++|....+.. ++. .+...+|..+...|++++
T Consensus 430 ~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~ 509 (903)
T PRK04841 430 TLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELAR 509 (903)
T ss_pred HHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHH
Confidence 88876533210 012345688888887776631 111 133466777778888888
Q ss_pred HHHHHHHhCChHHHHHHHHHhC
Q psy14927 124 AIHFYSVAGSCGNAVRLCKEQA 145 (1074)
Q Consensus 124 Ai~~y~~a~~~~~A~~la~~~~ 145 (1074)
|..+| .+|+++++..+
T Consensus 510 A~~~~------~~al~~~~~~g 525 (903)
T PRK04841 510 ALAMM------QQTEQMARQHD 525 (903)
T ss_pred HHHHH------HHHHHHHhhhc
Confidence 88875 45555666554
No 324
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=95.91 E-value=0.051 Score=65.34 Aligned_cols=59 Identities=12% Similarity=0.241 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHhCCCEEEeCceEEEEEecCCe-EEEEEeeccCCCCceEEEcCEEEEccCC
Q psy14927 948 GEVAKQFQRILGKQGMQFKLGTKVTGASKSGDN-ITVTIENVKDPTKKEELSCDALLVCVGR 1008 (1074)
Q Consensus 948 ~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~-~~v~~~~~~~~g~~~~i~~D~vi~a~G~ 1008 (1074)
..+...+.+.+++.||+++.++.++++..+++. +.|...+. +++...+.++.||+|+|-
T Consensus 131 ~~l~~~l~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~~--~g~~~~i~a~~VIlAtGg 190 (466)
T PRK08274 131 KALVNALYRSAERLGVEIRYDAPVTALELDDGRFVGARAGSA--AGGAERIRAKAVVLAAGG 190 (466)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCeEEEEEEEcc--CCceEEEECCEEEECCCC
Confidence 456777778888999999999999998865444 33444321 355567899999999984
No 325
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=95.91 E-value=0.93 Score=54.60 Aligned_cols=177 Identities=17% Similarity=0.198 Sum_probs=91.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhCChHHHHHHHHHhCchHHHHHHhhhcCchhHHHHHHHHcc-CChhHHHHHHHHhCCh
Q psy14927 109 YHLARQYENSGQFDEAIHFYSVAGSCGNAVRLCKEQALDDQLWNLALSAGPSEQIEAATYLET-IEPDKAVLLYHKAGAL 187 (1074)
Q Consensus 109 ~~la~~~~~~g~~~~Ai~~y~~a~~~~~A~~la~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~-~~~~~A~~ly~kaG~~ 187 (1074)
+.+|++|-..|++++|+++. ++|| +| ..+.++.+.-=|+.|.. |++.+|....-.|-..
T Consensus 198 ~~lAqhyd~~g~~~~Al~~I------d~aI----~h----------tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~L 257 (517)
T PF12569_consen 198 YFLAQHYDYLGDYEKALEYI------DKAI----EH----------TPTLVELYMTKARILKHAGDLKEAAEAMDEAREL 257 (517)
T ss_pred HHHHHHHHHhCCHHHHHHHH------HHHH----hc----------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence 45666666666666666541 2222 22 12223555555555554 5566665555555555
Q ss_pred HHHHHHHHhhccCCcchHHHHHHHHHHhcCCChhhHHHhhhhcchHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHccCC
Q psy14927 188 HKALDLAFKLTLSNSGLVFQIKAMKCLLKSGDTNKIIFFAGVSRMKEIYVMAANYLQSSDWKSQPELLKSIISFYSKGKA 267 (1074)
Q Consensus 188 ~kAl~l~~~~~~~~~~~~~~~~a~k~l~~~~~~~~~i~~a~~~r~~~l~~~aa~yl~~~~~~~~~~~~~~i~~~Y~k~~~ 267 (1074)
..|=+.+-. ++.|.+++.|++++++..++..-..+. +...+..+|
T Consensus 258 D~~DRyiNs------------K~aKy~LRa~~~e~A~~~~~~Ftr~~~-----------~~~~~L~~m------------ 302 (517)
T PF12569_consen 258 DLADRYINS------------KCAKYLLRAGRIEEAEKTASLFTREDV-----------DPLSNLNDM------------ 302 (517)
T ss_pred ChhhHHHHH------------HHHHHHHHCCCHHHHHHHHHhhcCCCC-----------CcccCHHHH------------
Confidence 444333222 577777888877776655543322111 111111221
Q ss_pred HHHHHHHHHHHHhHHHHhhcCHHHHHHHHHHHHHHHHhcCCCch---HHHHHHHHHHHHHHHHh-h-cCChHHHhhHHHH
Q psy14927 268 PHLLANFYVSCAQVEIDEFGNYEKGLGALNEAKRCLLKHNDSMY---ETLKSSVVEKLAEVEID-E-FGNYEKGLGALNE 342 (1074)
Q Consensus 268 ~~~aa~~~~~~a~~ei~e~~~y~~a~~~l~~a~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~-~-~~~~~~a~~~~~~ 342 (1074)
+..-|-..+|+-- .--|+|..|++.+....+++..-...+- .=-.+.++ -+.||. + +.|..-.-.+|.|
T Consensus 303 --Qc~Wf~~e~a~a~-~r~~~~~~ALk~~~~v~k~f~~~~~DQfDFH~Yc~RK~t---~r~Y~~~L~~ed~l~~~~~y~r 376 (517)
T PF12569_consen 303 --QCMWFETECAEAY-LRQGDYGLALKRFHAVLKHFDDFEEDQFDFHSYCLRKMT---LRAYVDMLRWEDKLRSHPFYRR 376 (517)
T ss_pred --HHHHHHHHHHHHH-HHHhhHHHHHHHHHHHHHHHHHHhcccccHHHHHHhhcc---HHHHHHHHHHHHHhhcCHHHHH
Confidence 1234555666665 6678888888888888888876443221 11111121 233444 1 3555555556777
Q ss_pred HHHH
Q psy14927 343 AKRC 346 (1074)
Q Consensus 343 ~~~~ 346 (1074)
++..
T Consensus 377 aa~~ 380 (517)
T PF12569_consen 377 AAKG 380 (517)
T ss_pred HHHH
Confidence 7655
No 326
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=95.88 E-value=0.023 Score=69.11 Aligned_cols=55 Identities=18% Similarity=0.352 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHhCCCEEEeCceEEEEEecCCe-EEEEEeeccCCCCceEEEcCEEEEccCC
Q psy14927 948 GEVAKQFQRILGKQGMQFKLGTKVTGASKSGDN-ITVTIENVKDPTKKEELSCDALLVCVGR 1008 (1074)
Q Consensus 948 ~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~-~~v~~~~~~~~g~~~~i~~D~vi~a~G~ 1008 (1074)
..+.+.+.+.+++.|++|+.++.|.+|..+++. +.|++.+ +.++.+|.||++++.
T Consensus 219 ~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~V~~~~------g~~~~ad~VI~a~~~ 274 (502)
T TIGR02734 219 GALVAAMAKLAEDLGGELRLNAEVIRIETEGGRATAVHLAD------GERLDADAVVSNADL 274 (502)
T ss_pred HHHHHHHHHHHHHCCCEEEECCeEEEEEeeCCEEEEEEECC------CCEEECCEEEECCcH
Confidence 456777888889999999999999999876554 4455443 457899999998875
No 327
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=95.86 E-value=0.015 Score=68.49 Aligned_cols=41 Identities=20% Similarity=0.261 Sum_probs=32.3
Q ss_pred CCeEEEee-eEEEe--cCCeEEEEeCCCCeeEEEcCeEEEccCCCC
Q psy14927 855 NKVTQLNG-HGKIT--GPNTVTVIKSDGSTEEVKTKNILIATGSEV 897 (1074)
Q Consensus 855 ~gV~~~~g-~v~~i--d~~~~~v~~~~G~~~~i~~d~lIIATG~~p 897 (1074)
.||+++.+ +++.+ +.+.+.|++++| .++++|.||.|.|...
T Consensus 125 ~~v~v~~~~~v~~i~~~~~~~~v~~~~g--~~~~a~lvIgADG~~S 168 (405)
T PRK08850 125 DNVTLLMPARCQSIAVGESEAWLTLDNG--QALTAKLVVGADGANS 168 (405)
T ss_pred CCeEEEcCCeeEEEEeeCCeEEEEECCC--CEEEeCEEEEeCCCCC
Confidence 47999888 56666 345667778888 6899999999999865
No 328
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=95.82 E-value=1.1 Score=52.84 Aligned_cols=42 Identities=10% Similarity=0.081 Sum_probs=29.1
Q ss_pred HHHHHHHHh---cCCCCCChhHHHHHHHHHHccCCHHHHHHHHHH
Q psy14927 236 YVMAANYLQ---SSDWKSQPELLKSIISFYSKGKAPHLLANFYVS 277 (1074)
Q Consensus 236 ~~~aa~yl~---~~~~~~~~~~~~~i~~~Y~k~~~~~~aa~~~~~ 277 (1074)
|..|-+||+ ....+.+|....++...|.+.|..++|..+|..
T Consensus 351 ~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~ 395 (409)
T TIGR00540 351 FIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQD 395 (409)
T ss_pred HHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 455555665 233456667777888888888888888877664
No 329
>PRK06185 hypothetical protein; Provisional
Probab=95.80 E-value=0.13 Score=60.55 Aligned_cols=57 Identities=19% Similarity=0.359 Sum_probs=39.4
Q ss_pred HHHHHHHHHHh-CCCEEEeCceEEEEEecCCeE-EEEEeeccCCCCceEEEcCEEEEccCCc
Q psy14927 950 VAKQFQRILGK-QGMQFKLGTKVTGASKSGDNI-TVTIENVKDPTKKEELSCDALLVCVGRR 1009 (1074)
Q Consensus 950 ~~~~~~~~l~~-~gV~i~~~~~v~~i~~~~~~~-~v~~~~~~~~g~~~~i~~D~vi~a~G~~ 1009 (1074)
+...+.+.+.+ .||+++.++++.++..+++.+ .|.+.. ++...++.+|.||.|.|..
T Consensus 110 l~~~L~~~~~~~~~v~i~~~~~v~~~~~~~~~v~~v~~~~---~~g~~~i~a~~vI~AdG~~ 168 (407)
T PRK06185 110 FLDFLAEEASAYPNFTLRMGAEVTGLIEEGGRVTGVRART---PDGPGEIRADLVVGADGRH 168 (407)
T ss_pred HHHHHHHHHhhCCCcEEEeCCEEEEEEEeCCEEEEEEEEc---CCCcEEEEeCEEEECCCCc
Confidence 44455555555 489999999999998765553 344443 1222579999999999865
No 330
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=95.80 E-value=0.019 Score=67.23 Aligned_cols=41 Identities=17% Similarity=0.151 Sum_probs=32.9
Q ss_pred CCeEEEee-eEEEe--cCCeEEEEeCCCCeeEEEcCeEEEccCCCC
Q psy14927 855 NKVTQLNG-HGKIT--GPNTVTVIKSDGSTEEVKTKNILIATGSEV 897 (1074)
Q Consensus 855 ~gV~~~~g-~v~~i--d~~~~~v~~~~G~~~~i~~d~lIIATG~~p 897 (1074)
.|++++.+ +++.+ +.+.+++++++| .++++|.||.|+|..+
T Consensus 124 ~~i~i~~~~~v~~~~~~~~~~~v~~~~g--~~~~~~lvIgADG~~S 167 (384)
T PRK08849 124 PNLTLMCPEKLADLEFSAEGNRVTLESG--AEIEAKWVIGADGANS 167 (384)
T ss_pred CCeEEECCCceeEEEEcCCeEEEEECCC--CEEEeeEEEEecCCCc
Confidence 47899888 46655 356678888888 6899999999999975
No 331
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=95.80 E-value=0.03 Score=49.79 Aligned_cols=84 Identities=21% Similarity=0.277 Sum_probs=53.6
Q ss_pred hcCCHHHHHHHHHHcCcccchhhhHhhhcHHHHHHHhhcCCChHHHHHHHHHHHhccCHHHHHHHHHHhhChhhhhhHhh
Q psy14927 8 KNGDIDRAIRMFEKAETHQQHVPRMLLENTDKLEKYIIQSKDPVLLKWWAQYIESTEDMDLAMKYYEEARDYLSMVRVLC 87 (1074)
Q Consensus 8 ~~g~~~eA~~~Ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~~~~vr~l~ 87 (1074)
++|++++|+.+|++.-..+ +...++..|.++|+.+-..|+|+.|.+++.+ ..+
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~------------------~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~-------- 53 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELD------------------PTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKL-------- 53 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHH------------------CGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTH--------
T ss_pred CCccHHHHHHHHHHHHHHC------------------CCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCC--------
Confidence 3678888888888776333 1100234555567777666666666666544 111
Q ss_pred ccCCHHHHHHHHHhcCChHHHHHHHHHHHhcCChHHHHHHHHHh
Q psy14927 88 FLQDFSRAAELANASGDTAAAYHLARQYENSGQFDEAIHFYSVA 131 (1074)
Q Consensus 88 ~~~~~~~a~~i~~~~~~~~~~~~la~~~~~~g~~~~Ai~~y~~a 131 (1074)
...+....+.+|+.|.+.|++++||+.|.++
T Consensus 54 -------------~~~~~~~~~l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 54 -------------DPSNPDIHYLLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp -------------HHCHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred -------------CCCCHHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence 2234567778899999999999999998764
No 332
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=95.79 E-value=1.7 Score=49.90 Aligned_cols=127 Identities=18% Similarity=0.200 Sum_probs=85.2
Q ss_pred hhhcCCHHHHHHHHHHcCcccchhh---h---Hh--h----hcHHHHHHHhhc--C---CChHHHHHHHHHHHhccCHHH
Q psy14927 6 TMKNGDIDRAIRMFEKAETHQQHVP---R---ML--L----ENTDKLEKYIIQ--S---KDPVLLKWWAQYIESTEDMDL 68 (1074)
Q Consensus 6 ~~~~g~~~eA~~~Ye~~~~~~~~~~---~---~~--~----~~~~~~~~~~~~--~---~~~~l~~~~a~~~e~~~~~~~ 68 (1074)
+-..|++++|..+|+++-.....-+ . .+ + +....+.+.+.. . .....+..+|..++..|+++.
T Consensus 53 ~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~ 132 (355)
T cd05804 53 AWIAGDLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDR 132 (355)
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHH
Confidence 3457999999999998653321111 1 11 1 222333333322 2 223355566889999999999
Q ss_pred HHHHHHHhhC--------hhhhhhHhhccCCHHHHHHHHHhcC-----ChH----HHHHHHHHHHhcCChHHHHHHHHHh
Q psy14927 69 AMKYYEEARD--------YLSMVRVLCFLQDFSRAAELANASG-----DTA----AAYHLARQYENSGQFDEAIHFYSVA 131 (1074)
Q Consensus 69 A~~~y~~a~d--------~~~~vr~l~~~~~~~~a~~i~~~~~-----~~~----~~~~la~~~~~~g~~~~Ai~~y~~a 131 (1074)
|.+.|.++-. +..+..++...|++++|....+..- +.. ...++|+.+..+|++++|++.|.++
T Consensus 133 A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~ 212 (355)
T cd05804 133 AEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTH 212 (355)
T ss_pred HHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9999998643 2456677889999999999876311 111 2347999999999999999999887
Q ss_pred C
Q psy14927 132 G 132 (1074)
Q Consensus 132 ~ 132 (1074)
.
T Consensus 213 ~ 213 (355)
T cd05804 213 I 213 (355)
T ss_pred h
Confidence 3
No 333
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=95.77 E-value=0.08 Score=55.65 Aligned_cols=85 Identities=16% Similarity=0.220 Sum_probs=69.9
Q ss_pred CCChHHHHHHHHHHHhccCHHHHHHHHHHhhCh--------hhhhhHh-hccCC--HHHHHHHHH-----hcCChHHHHH
Q psy14927 47 SKDPVLLKWWAQYIESTEDMDLAMKYYEEARDY--------LSMVRVL-CFLQD--FSRAAELAN-----ASGDTAAAYH 110 (1074)
Q Consensus 47 ~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~--------~~~vr~l-~~~~~--~~~a~~i~~-----~~~~~~~~~~ 110 (1074)
+++...|..+|..+...|++++|..+|.++-.. .....+| ...|+ .++|.++.+ ++++..+.+.
T Consensus 70 P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~ 149 (198)
T PRK10370 70 PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALML 149 (198)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHH
Confidence 688999999999999999999999999997654 2344443 45566 478888776 4678889999
Q ss_pred HHHHHHhcCChHHHHHHHHHh
Q psy14927 111 LARQYENSGQFDEAIHFYSVA 131 (1074)
Q Consensus 111 la~~~~~~g~~~~Ai~~y~~a 131 (1074)
+|..+.+.|++++|+.+|.++
T Consensus 150 LA~~~~~~g~~~~Ai~~~~~a 170 (198)
T PRK10370 150 LASDAFMQADYAQAIELWQKV 170 (198)
T ss_pred HHHHHHHcCCHHHHHHHHHHH
Confidence 999999999999999987765
No 334
>PLN02985 squalene monooxygenase
Probab=95.74 E-value=0.066 Score=64.90 Aligned_cols=29 Identities=14% Similarity=0.098 Sum_probs=25.1
Q ss_pred chhhhhhccccchHHHHHHHhh-----hhhhhcc
Q psy14927 794 RQVVLNTLGNCAAVQANYHLAT-----KLFTQAG 822 (1074)
Q Consensus 794 k~~VviiGgG~AGl~aA~~la~-----~l~e~~~ 822 (1074)
..+|+|||||++|+++|+.|++ +++|+..
T Consensus 43 ~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~ 76 (514)
T PLN02985 43 ATDVIIVGAGVGGSALAYALAKDGRRVHVIERDL 76 (514)
T ss_pred CceEEEECCCHHHHHHHHHHHHcCCeEEEEECcC
Confidence 4569999999999999999998 6777754
No 335
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=95.71 E-value=0.14 Score=63.74 Aligned_cols=129 Identities=12% Similarity=0.092 Sum_probs=101.9
Q ss_pred cHHHHHHHhhc-CCChHHHHHHHHHHHhccCHHHHHHHHHHhhCh--------hhhhhHhhccCCHHHHHHHHH-----h
Q psy14927 36 NTDKLEKYIIQ-SKDPVLLKWWAQYIESTEDMDLAMKYYEEARDY--------LSMVRVLCFLQDFSRAAELAN-----A 101 (1074)
Q Consensus 36 ~~~~~~~~~~~-~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~--------~~~vr~l~~~~~~~~a~~i~~-----~ 101 (1074)
+..++..|+.. .+++..+..+|+..++.|.+++|++.+.++=.+ ...+++|.+++.+++|...++ +
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~ 150 (694)
T PRK15179 71 ALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG 150 (694)
T ss_pred hHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC
Confidence 44566666666 466999999999999999999999999986443 456677999999999988877 4
Q ss_pred cCChHHHHHHHHHHHhcCChHHHHHHHHHhCChHHHHHHHHHhCchHHHHHHhhhcCchhHHHHHHHHcc-CChhHHHHH
Q psy14927 102 SGDTAAAYHLARQYENSGQFDEAIHFYSVAGSCGNAVRLCKEQALDDQLWNLALSAGPSEQIEAATYLET-IEPDKAVLL 180 (1074)
Q Consensus 102 ~~~~~~~~~la~~~~~~g~~~~Ai~~y~~a~~~~~A~~la~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~-~~~~~A~~l 180 (1074)
+.+..+.+.+|..+.+.|.+++|+..|.++-. .+ ...+...+..|.-+.+ |+.+.|+..
T Consensus 151 p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~---------~~-----------p~~~~~~~~~a~~l~~~G~~~~A~~~ 210 (694)
T PRK15179 151 SSSAREILLEAKSWDEIGQSEQADACFERLSR---------QH-----------PEFENGYVGWAQSLTRRGALWRARDV 210 (694)
T ss_pred CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHh---------cC-----------CCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 67778899999999999999999999875421 11 1223455678887777 789999999
Q ss_pred HHHh
Q psy14927 181 YHKA 184 (1074)
Q Consensus 181 y~ka 184 (1074)
|.+|
T Consensus 211 ~~~a 214 (694)
T PRK15179 211 LQAG 214 (694)
T ss_pred HHHH
Confidence 9887
No 336
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=95.70 E-value=0.07 Score=64.00 Aligned_cols=54 Identities=15% Similarity=0.335 Sum_probs=40.2
Q ss_pred CHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccCC
Q psy14927 947 DGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGR 1008 (1074)
Q Consensus 947 ~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~ 1008 (1074)
+..+...+.+.+++.||+|+.++.|..++.. +.+.|++.+ + ++.+|.||+|+|.
T Consensus 182 P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~~-~~~~v~t~~------g-~v~A~~VV~Atga 235 (460)
T TIGR03329 182 PGLLVRGLRRVALELGVEIHENTPMTGLEEG-QPAVVRTPD------G-QVTADKVVLALNA 235 (460)
T ss_pred HHHHHHHHHHHHHHcCCEEECCCeEEEEeeC-CceEEEeCC------c-EEECCEEEEcccc
Confidence 3456677778888999999999999999753 334444322 2 5899999999884
No 337
>PLN02487 zeta-carotene desaturase
Probab=95.66 E-value=0.054 Score=66.02 Aligned_cols=60 Identities=17% Similarity=0.217 Sum_probs=44.6
Q ss_pred CCHHHHHHHHHHHHhCCCEEEeCceEEEEEecC--Ce----EEEEEeeccCCCCceEEEcCEEEEccCC
Q psy14927 946 IDGEVAKQFQRILGKQGMQFKLGTKVTGASKSG--DN----ITVTIENVKDPTKKEELSCDALLVCVGR 1008 (1074)
Q Consensus 946 ~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~--~~----~~v~~~~~~~~g~~~~i~~D~vi~a~G~ 1008 (1074)
+...+.+.+.+.+++.|++|++++.|.+|..++ ++ ..|++.+ ++++..+.+|.||++++.
T Consensus 293 ~~~~l~~pl~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~---~~~~~~~~aD~VV~A~p~ 358 (569)
T PLN02487 293 PDVRLSGPIAKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSK---ATEKEIVKADAYVAACDV 358 (569)
T ss_pred chHHHHHHHHHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEec---CCCceEEECCEEEECCCH
Confidence 334578888999999999999999999998752 22 3445432 134567899999999875
No 338
>PRK10262 thioredoxin reductase; Provisional
Probab=95.66 E-value=0.024 Score=64.59 Aligned_cols=90 Identities=16% Similarity=0.145 Sum_probs=60.1
Q ss_pred hhhhhhccccchHHHHHHHhh-----hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEee-eEEEec
Q psy14927 795 QVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNG-HGKITG 868 (1074)
Q Consensus 795 ~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g-~v~~id 868 (1074)
++|+|||||+.|+..|..+++ ++++..+.. ... ..+...+.+.++..||+++.+ .++.++
T Consensus 147 ~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~---------~~~-----~~~~~~~~~~l~~~gV~i~~~~~v~~v~ 212 (321)
T PRK10262 147 QKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGF---------RAE-----KILIKRLMDKVENGNIILHTNRTLEEVT 212 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCcc---------CCC-----HHHHHHHHhhccCCCeEEEeCCEEEEEE
Confidence 349999999999999999987 444443321 000 112233566677889999998 577776
Q ss_pred CCe---EEEEeCC----CCeeEEEcCeEEEccCCCCC
Q psy14927 869 PNT---VTVIKSD----GSTEEVKTKNILIATGSEVT 898 (1074)
Q Consensus 869 ~~~---~~v~~~~----G~~~~i~~d~lIIATG~~p~ 898 (1074)
.+. ..|++.+ +...++.+|.||+++|.+|.
T Consensus 213 ~~~~~~~~v~~~~~~~~~~~~~i~~D~vv~a~G~~p~ 249 (321)
T PRK10262 213 GDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPN 249 (321)
T ss_pred cCCccEEEEEEEEcCCCCeEEEEECCEEEEEeCCccC
Confidence 542 1233332 22357999999999999984
No 339
>PRK07121 hypothetical protein; Validated
Probab=95.62 E-value=0.061 Score=65.11 Aligned_cols=59 Identities=12% Similarity=0.202 Sum_probs=44.0
Q ss_pred CHHHHHHHHHHHHhCCCEEEeCceEEEEEecCC--eEEEEEeeccCCCCceEEEc-CEEEEccCC
Q psy14927 947 DGEVAKQFQRILGKQGMQFKLGTKVTGASKSGD--NITVTIENVKDPTKKEELSC-DALLVCVGR 1008 (1074)
Q Consensus 947 ~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~--~~~v~~~~~~~~g~~~~i~~-D~vi~a~G~ 1008 (1074)
...+...+.+.+++.||++++++.++++..+++ ...|...+ +++...+.+ +.||+|+|-
T Consensus 176 g~~~~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~---~~~~~~i~a~k~VVlAtGg 237 (492)
T PRK07121 176 GAMLMDPLAKRAAALGVQIRYDTRATRLIVDDDGRVVGVEARR---YGETVAIRARKGVVLAAGG 237 (492)
T ss_pred hHHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCCEEEEEEEe---CCcEEEEEeCCEEEECCCC
Confidence 345677778888899999999999999876432 24455544 344567888 999999984
No 340
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=95.61 E-value=0.021 Score=67.56 Aligned_cols=40 Identities=20% Similarity=0.229 Sum_probs=29.5
Q ss_pred CeEEEee-eEEEec--CCeEEEEeCCCCeeEEEcCeEEEccCCCC
Q psy14927 856 KVTQLNG-HGKITG--PNTVTVIKSDGSTEEVKTKNILIATGSEV 897 (1074)
Q Consensus 856 gV~~~~g-~v~~id--~~~~~v~~~~G~~~~i~~d~lIIATG~~p 897 (1074)
++.+..+ +|+.++ .+.+++++++| .++.+|.||.|.|...
T Consensus 117 ~~~v~~~~~v~~i~~~~~~~~v~~~~g--~~~~ad~vVgADG~~S 159 (414)
T TIGR03219 117 EGIASFGKRATQIEEQAEEVQVLFTDG--TEYRCDLLIGADGIKS 159 (414)
T ss_pred CceEEcCCEEEEEEecCCcEEEEEcCC--CEEEeeEEEECCCccH
Confidence 4456666 566654 45577777888 5799999999999875
No 341
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=95.60 E-value=0.018 Score=67.45 Aligned_cols=50 Identities=12% Similarity=0.048 Sum_probs=33.7
Q ss_pred HHHHhhhCCeEEEee-eEEEe---cCCeEEEEeC-CCCeeEEEcCeEEEccCCCC
Q psy14927 848 IAHLFKSNKVTQLNG-HGKIT---GPNTVTVIKS-DGSTEEVKTKNILIATGSEV 897 (1074)
Q Consensus 848 ~~~~l~~~gV~~~~g-~v~~i---d~~~~~v~~~-~G~~~~i~~d~lIIATG~~p 897 (1074)
+.+.+...|+.++++ +++.+ +.+...|++. +|+..++++|.||-|-|.+.
T Consensus 109 L~~~~~~~g~~~~~~~~~v~~~~~~~~~~~V~~~~~g~~~~i~adlvIGADG~~S 163 (390)
T TIGR02360 109 LMEAREAAGLTTVYDADDVRLHDLAGDRPYVTFERDGERHRLDCDFIAGCDGFHG 163 (390)
T ss_pred HHHHHHhcCCeEEEeeeeEEEEecCCCccEEEEEECCeEEEEEeCEEEECCCCch
Confidence 334445568888887 33433 4455667665 77445799999999999865
No 342
>PRK11189 lipoprotein NlpI; Provisional
Probab=95.56 E-value=0.48 Score=53.19 Aligned_cols=60 Identities=18% Similarity=0.096 Sum_probs=41.8
Q ss_pred hHHHHHHHHHHHhccCHHHHHHHHHHhhChhhhhhHhhccCCHHHHHHHHHhcCChHHHHHHHHHHHhcCChHHHHHHHH
Q psy14927 50 PVLLKWWAQYIESTEDMDLAMKYYEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAAYHLARQYENSGQFDEAIHFYS 129 (1074)
Q Consensus 50 ~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~~~~vr~l~~~~~~~~a~~i~~~~~~~~~~~~la~~~~~~g~~~~Ai~~y~ 129 (1074)
+..|-..|..+...|+++.|...|.++-.. .+++..+.+.+|..|...|++++|++.|.
T Consensus 64 a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l---------------------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~ 122 (296)
T PRK11189 64 AQLHYERGVLYDSLGLRALARNDFSQALAL---------------------RPDMADAYNYLGIYLTQAGNFDAAYEAFD 122 (296)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHc---------------------CCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 456777788888888888888877766332 33455666777777777777777776543
Q ss_pred H
Q psy14927 130 V 130 (1074)
Q Consensus 130 ~ 130 (1074)
+
T Consensus 123 ~ 123 (296)
T PRK11189 123 S 123 (296)
T ss_pred H
Confidence 3
No 343
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=95.56 E-value=0.0089 Score=69.50 Aligned_cols=47 Identities=21% Similarity=0.327 Sum_probs=34.3
Q ss_pred HHHHhh-hCCeEEEeeeEEEecC--C--eEEEEeCCCCeeEEEcCeEEEccCCC
Q psy14927 848 IAHLFK-SNKVTQLNGHGKITGP--N--TVTVIKSDGSTEEVKTKNILIATGSE 896 (1074)
Q Consensus 848 ~~~~l~-~~gV~~~~g~v~~id~--~--~~~v~~~~G~~~~i~~d~lIIATG~~ 896 (1074)
++..+. ..|++++.+.|+.+.. + -.-|++.+| ..+.++.|||+||.-
T Consensus 106 mk~~le~~~NL~l~q~~v~dli~e~~~~v~GV~t~~G--~~~~a~aVVlTTGTF 157 (621)
T COG0445 106 MKNELENQPNLHLLQGEVEDLIVEEGQRVVGVVTADG--PEFHAKAVVLTTGTF 157 (621)
T ss_pred HHHHHhcCCCceehHhhhHHHhhcCCCeEEEEEeCCC--CeeecCEEEEeeccc
Confidence 344443 3489999998776532 2 255778888 789999999999984
No 344
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=95.54 E-value=0.0034 Score=65.08 Aligned_cols=39 Identities=18% Similarity=0.015 Sum_probs=29.0
Q ss_pred chhhhhhccccchHHHHHHHhh-----hhhhhccccccccchhh
Q psy14927 794 RQVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLET 832 (1074)
Q Consensus 794 k~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~~ 832 (1074)
..+|+|+||||+|++||++|++ .+||+....|+.+....
T Consensus 17 ~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~Gg 60 (230)
T PF01946_consen 17 EYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWGGG 60 (230)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS-C
T ss_pred cCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCccccccc
Confidence 3459999999999999999999 78998887777665443
No 345
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=95.54 E-value=0.12 Score=60.81 Aligned_cols=54 Identities=20% Similarity=0.267 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHhCCCEEEeCceEEEEEec-CCeE-EEEEeeccCCCCceEEEcCEEEEccCC
Q psy14927 948 GEVAKQFQRILGKQGMQFKLGTKVTGASKS-GDNI-TVTIENVKDPTKKEELSCDALLVCVGR 1008 (1074)
Q Consensus 948 ~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~-~~~~-~v~~~~~~~~g~~~~i~~D~vi~a~G~ 1008 (1074)
..+...+.+.+.+.|++++.++.|+++... ++.+ .|.+.+ + ++.++.||+|+|-
T Consensus 183 ~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~------g-~i~a~~vVvaagg 238 (407)
T TIGR01373 183 DAVAWGYARGADRRGVDIIQNCEVTGFIRRDGGRVIGVETTR------G-FIGAKKVGVAVAG 238 (407)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeCC------c-eEECCEEEECCCh
Confidence 344555667788999999999999999753 2332 343322 2 5899998887664
No 346
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=95.49 E-value=0.026 Score=65.79 Aligned_cols=47 Identities=13% Similarity=0.212 Sum_probs=32.7
Q ss_pred HHHHhhhC-CeEEEee-eEEEe--cCCeEEEEeCCCCeeEEEcCeEEEccCCCC
Q psy14927 848 IAHLFKSN-KVTQLNG-HGKIT--GPNTVTVIKSDGSTEEVKTKNILIATGSEV 897 (1074)
Q Consensus 848 ~~~~l~~~-gV~~~~g-~v~~i--d~~~~~v~~~~G~~~~i~~d~lIIATG~~p 897 (1074)
+.+.+... +++++.+ +++.+ +++.+.+.+.++ ++.+|.||.|-|...
T Consensus 110 L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~~---~~~adlvIgADG~~S 160 (374)
T PRK06617 110 LLSKITNNPLITLIDNNQYQEVISHNDYSIIKFDDK---QIKCNLLIICDGANS 160 (374)
T ss_pred HHHHHhcCCCcEEECCCeEEEEEEcCCeEEEEEcCC---EEeeCEEEEeCCCCc
Confidence 33444444 4888887 45554 345667777654 799999999999875
No 347
>KOG2247|consensus
Probab=95.42 E-value=0.00056 Score=77.12 Aligned_cols=150 Identities=15% Similarity=0.107 Sum_probs=125.0
Q ss_pred HhhhhHHHHHHHHHHHHhhhcHHHHHHHHHHhhCHHHHHHHHH--HcCCHHHHHHHHHhcCCcHHHHHHHHHHHhcCCHH
Q psy14927 619 ILIIYRVLLKWWAQYIESTEDMDLAMKYYEEARDYLSMVRVLC--FLQDFSRAAELANASGDTAAAYHLARQYENSGQFD 696 (1074)
Q Consensus 619 ~~~~~~~l~~~~a~~~e~~~~~~~A~~~y~~ag~~~~ai~~~~--~~~~~~~a~~v~~~~~~~~~~~~~A~~~~~~g~~~ 696 (1074)
..+++|+.+-.+|.+.+..+ ..|. .|..+++....+|.|. ++.+.++|.+++..+ .+.++..|++|... +|.
T Consensus 222 ~sVvsgKkhl~yak~nE~D~--pval-~fq~~~gni~cyrwylDg~i~igf~ag~iV~iS--~h~aeLgaeffqkl-dy~ 295 (615)
T KOG2247|consen 222 VSVVSGKKHLMYAKYNELDE--PVAL-QFQEKYGNIHCYRWYLDGYILIGFDAGYIVSIS--AHNAELGAEFFQKL-DYR 295 (615)
T ss_pred eeeeecHHHHHHHhhcCCCC--ccce-EeeecCCceeEEEEeccccccccccceeEEEEe--ccchHHHHHHHHHh-hHH
Confidence 34567888889999998887 6777 9999999999999984 689999999999766 66777889999999 999
Q ss_pred HHHHHHHHcCCHHHHHHHhccHHHHHHHHHHhCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHcCCC
Q psy14927 697 EAIHFYSVAGSCGNAVRLCGQLDAVESIASELNVQSDQDLILKCASYFARREHHDRAVQMYAIARRYDQALSLIQTKHVP 776 (1074)
Q Consensus 697 ~A~~~~~kag~~~~Av~ma~~w~~a~~~A~~~~~~~~~~~~~~~a~~~~~~~~~~~Ai~~y~~ag~~~~Ai~~~~~~~~~ 776 (1074)
.|.++...+++..+|+.++.+.++..++++..... ...+..+.+++.....-.+.++|..++++..+...+.+.+.+
T Consensus 296 ~aLqsiavsqcvnkaftlgdn~nkvRdl~el~e~y---~n~L~eaek~lge~~~t~dgqlyals~Q~g~l~~fLtKLpil 372 (615)
T KOG2247|consen 296 GALQSIAVSQCVNKAFTLGDNMNKVRDLDELTEVY---MNTLIEAEKNLGEIEVTEDGQLYALSSQSGVLSIFLTKLPIL 372 (615)
T ss_pred hhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH---HHHHHHHHhccCceeeeeccceeeehhccchHHHHHHhhhhh
Confidence 99999999999999999988888888887765111 222566777777777789999999999999999998887664
Q ss_pred C
Q psy14927 777 L 777 (1074)
Q Consensus 777 ~ 777 (1074)
.
T Consensus 373 c 373 (615)
T KOG2247|consen 373 C 373 (615)
T ss_pred h
Confidence 3
No 348
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=95.32 E-value=0.037 Score=65.97 Aligned_cols=51 Identities=16% Similarity=0.002 Sum_probs=32.4
Q ss_pred hHHHHhhhCCeEEEee-eEEEecC--C-e---EEEEeCCCCeeEEEcCeEEEccCCCC
Q psy14927 847 GIAHLFKSNKVTQLNG-HGKITGP--N-T---VTVIKSDGSTEEVKTKNILIATGSEV 897 (1074)
Q Consensus 847 ~~~~~l~~~gV~~~~g-~v~~id~--~-~---~~v~~~~G~~~~i~~d~lIIATG~~p 897 (1074)
.+.+.+.+.||+++.+ .|+.+.. + . +.+...++....+.++.||+|||+..
T Consensus 135 ~l~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg~~ 192 (439)
T TIGR01813 135 KLYKKAKKEGIDTRLNSKVEDLIQDDQGTVVGVVVKGKGKGIYIKAAKAVVLATGGFG 192 (439)
T ss_pred HHHHHHHHcCCEEEeCCEeeEeEECCCCcEEEEEEEeCCCeEEEEecceEEEecCCCC
Confidence 3455566779999998 4665532 2 1 22333444334578999999999753
No 349
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=95.22 E-value=0.038 Score=64.80 Aligned_cols=103 Identities=19% Similarity=0.167 Sum_probs=0.0
Q ss_pred cchhhhhhccccchHHHHHHHhh--------hhhhhcccc----------ccccchhhhhhhhhHHH-------------
Q psy14927 793 QRQVVLNTLGNCAAVQANYHLAT--------KLFTQAGDK----------GVKLNLETMMGTKSAAV------------- 841 (1074)
Q Consensus 793 ~k~~VviiGgG~AGl~aA~~la~--------~l~e~~~~~----------g~~~~~~~~~~~~~~~~------------- 841 (1074)
.+.+|+||||||+|+++|+.|++ +++|+.... +..+..........--+
T Consensus 2 ~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~ 81 (395)
T PRK05732 2 SRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAFAPESDAHPGFDARAIALAAGTCQQLARLGVWQALADCATPITH 81 (395)
T ss_pred CcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCCCcccccCCCCCccceeccHHHHHHHHHCCChhhhHhhcCCccE
Q ss_pred ------------------------------hhhhhhHHHHhhh-CCeEEEee-eEEEe--cCCeEEEEeCCCCeeEEEcC
Q psy14927 842 ------------------------------KALTGGIAHLFKS-NKVTQLNG-HGKIT--GPNTVTVIKSDGSTEEVKTK 887 (1074)
Q Consensus 842 ------------------------------~~l~~~~~~~l~~-~gV~~~~g-~v~~i--d~~~~~v~~~~G~~~~i~~d 887 (1074)
..+...+.+.+.. .|++++.+ +++.+ +.+.+.|++++| ..+.+|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~~~~~v~~~~g--~~~~a~ 159 (395)
T PRK05732 82 IHVSDRGHAGFVRLDAEDYGVPALGYVVELHDVGQRLFALLDKAPGVTLHCPARVANVERTQGSVRVTLDDG--ETLTGR 159 (395)
T ss_pred EEEecCCCCceEEeehhhcCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCEEEEEEEcCCeEEEEECCC--CEEEeC
Q ss_pred eEEEccCCCC
Q psy14927 888 NILIATGSEV 897 (1074)
Q Consensus 888 ~lIIATG~~p 897 (1074)
.||.|.|...
T Consensus 160 ~vI~AdG~~S 169 (395)
T PRK05732 160 LLVAADGSHS 169 (395)
T ss_pred EEEEecCCCh
No 350
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=95.19 E-value=0.088 Score=52.29 Aligned_cols=93 Identities=17% Similarity=0.157 Sum_probs=72.3
Q ss_pred HhhhcCCHHHHHHHHHHcCcccchhhhHhhhcHHHHHHHhhcCCChHHHHHHHHHHHhccCHHHHHHHHHHhhChhhhhh
Q psy14927 5 ETMKNGDIDRAIRMFEKAETHQQHVPRMLLENTDKLEKYIIQSKDPVLLKWWAQYIESTEDMDLAMKYYEEARDYLSMVR 84 (1074)
Q Consensus 5 ~~~~~g~~~eA~~~Ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~~~~vr 84 (1074)
.|.+.|++++|+++|+-.-..| ..+..=|-.+|-.+...|+|++|+.+|.+|.-.
T Consensus 44 ~ly~~G~l~~A~~~f~~L~~~D--------------------p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L----- 98 (157)
T PRK15363 44 QLMEVKEFAGAARLFQLLTIYD--------------------AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQI----- 98 (157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC--------------------cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----
Confidence 3667888888888888877666 223555777788888899999999999888766
Q ss_pred HhhccCCHHHHHHHHHhcCChHHHHHHHHHHHhcCChHHHHHHHHHhCChHHHHHHHHHh
Q psy14927 85 VLCFLQDFSRAAELANASGDTAAAYHLARQYENSGQFDEAIHFYSVAGSCGNAVRLCKEQ 144 (1074)
Q Consensus 85 ~l~~~~~~~~a~~i~~~~~~~~~~~~la~~~~~~g~~~~Ai~~y~~a~~~~~A~~la~~~ 144 (1074)
..++....+++|..+...|+.+.|.+.| +.||..|-.+
T Consensus 99 ----------------~~ddp~~~~~ag~c~L~lG~~~~A~~aF------~~Ai~~~~~~ 136 (157)
T PRK15363 99 ----------------KIDAPQAPWAAAECYLACDNVCYAIKAL------KAVVRICGEV 136 (157)
T ss_pred ----------------CCCCchHHHHHHHHHHHcCCHHHHHHHH------HHHHHHhccC
Confidence 3357788999999999999999999864 5666666433
No 351
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.18 E-value=0.37 Score=50.47 Aligned_cols=146 Identities=17% Similarity=0.160 Sum_probs=103.8
Q ss_pred hhcCCHHHHHHHHHHcCcccchhhhHh---------hhcHHHHHHHhhc-----CCChHHHHHHHHHHHhccCHHHHHHH
Q psy14927 7 MKNGDIDRAIRMFEKAETHQQHVPRML---------LENTDKLEKYIIQ-----SKDPVLLKWWAQYIESTEDMDLAMKY 72 (1074)
Q Consensus 7 ~~~g~~~eA~~~Ye~~~~~~~~~~~~~---------~~~~~~~~~~~~~-----~~~~~l~~~~a~~~e~~~~~~~A~~~ 72 (1074)
.+.|++..|-...+|+-.+|...++.. .+..+.+.+.-.+ +++-.++..||-|+=++|++++|..+
T Consensus 46 L~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~ 125 (250)
T COG3063 46 LQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQ 125 (250)
T ss_pred HHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHH
Confidence 467888899999999888886653332 1345555554444 45566888888888888999998888
Q ss_pred HHHh----------hChhhhhhHhhccCCHHHHHHHHH-----hcCChHHHHHHHHHHHhcCChHHHHHHHHHhCC----
Q psy14927 73 YEEA----------RDYLSMVRVLCFLQDFSRAAELAN-----ASGDTAAAYHLARQYENSGQFDEAIHFYSVAGS---- 133 (1074)
Q Consensus 73 y~~a----------~d~~~~vr~l~~~~~~~~a~~i~~-----~~~~~~~~~~la~~~~~~g~~~~Ai~~y~~a~~---- 133 (1074)
|++| +-|.+++=|-.+.|+++.|.+..+ ++....+...+|+...+.|++-.|-.||-+-..
T Consensus 126 F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~ 205 (250)
T COG3063 126 FERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGA 205 (250)
T ss_pred HHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccc
Confidence 8874 456777777777788888888766 345667778888888888888888877765332
Q ss_pred ----hHHHHHHHHHhCchHHHHH
Q psy14927 134 ----CGNAVRLCKEQALDDQLWN 152 (1074)
Q Consensus 134 ----~~~A~~la~~~~~~~~~~~ 152 (1074)
.-=.|++|+..|-.+..-.
T Consensus 206 ~A~sL~L~iriak~~gd~~~a~~ 228 (250)
T COG3063 206 QAESLLLGIRIAKRLGDRAAAQR 228 (250)
T ss_pred cHHHHHHHHHHHHHhccHHHHHH
Confidence 2335777777776555533
No 352
>KOG0495|consensus
Probab=95.17 E-value=0.49 Score=56.07 Aligned_cols=175 Identities=15% Similarity=0.161 Sum_probs=123.1
Q ss_pred hcCCHHHHHHHHHHcCcccchhhhHhh---------hcHHHHHHHhhc-----CCChHHHHHHHHHHHhccCHHHHHHHH
Q psy14927 8 KNGDIDRAIRMFEKAETHQQHVPRMLL---------ENTDKLEKYIIQ-----SKDPVLLKWWAQYIESTEDMDLAMKYY 73 (1074)
Q Consensus 8 ~~g~~~eA~~~Ye~~~~~~~~~~~~~~---------~~~~~~~~~~~~-----~~~~~l~~~~a~~~e~~~~~~~A~~~y 73 (1074)
.+.++++|-.++.++-... --+|+++ ++.+.+..|+.. +.-++||...||..|+.++.+.|.+.|
T Consensus 630 en~e~eraR~llakar~~s-gTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY 708 (913)
T KOG0495|consen 630 ENDELERARDLLAKARSIS-GTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAY 708 (913)
T ss_pred ccccHHHHHHHHHHHhccC-CcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3468999999998876433 3355654 345566666655 577899999999999999999999999
Q ss_pred HHhhC--------hhhhhhHhhccCCHHHHHHHHH-----hcCChHHHHHHHHHHHhcCChHHHHHHHHHh--------C
Q psy14927 74 EEARD--------YLSMVRVLCFLQDFSRAAELAN-----ASGDTAAAYHLARQYENSGQFDEAIHFYSVA--------G 132 (1074)
Q Consensus 74 ~~a~d--------~~~~vr~l~~~~~~~~a~~i~~-----~~~~~~~~~~la~~~~~~g~~~~Ai~~y~~a--------~ 132 (1074)
.+.=- |.+++++=...|++-+|..|.. ++++.......=|+=.+.|+.++|-.+..+| -
T Consensus 709 ~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~ 788 (913)
T KOG0495|consen 709 LQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGL 788 (913)
T ss_pred HhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccch
Confidence 88543 4667777777788888888764 2334433334446666788888887776664 2
Q ss_pred ChHHHHHHHHHhCchHHHHHHhhh--cCchhHHHHHHHHcc-CChhHHHHHHHH
Q psy14927 133 SCGNAVRLCKEQALDDQLWNLALS--AGPSEQIEAATYLET-IEPDKAVLLYHK 183 (1074)
Q Consensus 133 ~~~~A~~la~~~~~~~~~~~l~~~--~~~~~~~~~A~~~e~-~~~~~A~~ly~k 183 (1074)
-|.+||-|...++......+..-. ..+.+++.+|..|=+ .++++|-.-|.+
T Consensus 789 LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~R 842 (913)
T KOG0495|consen 789 LWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFER 842 (913)
T ss_pred hHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 388888888888777666665533 445677777776654 667777776654
No 353
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=95.16 E-value=0.81 Score=49.25 Aligned_cols=63 Identities=11% Similarity=0.102 Sum_probs=42.9
Q ss_pred HHHHhHHHHhhcCHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhhcCChHHHhhHHHHHHHH
Q psy14927 276 VSCAQVEIDEFGNYEKGLGALNEAKRCLLKHNDSMYETLKSSVVEKLAEVEIDEFGNYEKGLGALNEAKRC 346 (1074)
Q Consensus 276 ~~~a~~ei~e~~~y~~a~~~l~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 346 (1074)
...|... -..|+|..|...+..+++........ ..........+.+ .|+++.|+..+.+....
T Consensus 170 ~~~a~~~-~~~g~~~~A~~~~~~al~~~p~~~~~------~~a~~~l~~~~~~-lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 170 LYVARFY-LKRGAYVAAINRFETVVENYPDTPAT------EEALARLVEAYLK-LGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHH-HHcCChHHHHHHHHHHHHHCCCCcch------HHHHHHHHHHHHH-cCCHHHHHHHHHHHHhh
Confidence 3455555 66799999999999988876553111 1122344566777 69999999977766554
No 354
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=95.07 E-value=0.16 Score=61.09 Aligned_cols=57 Identities=18% Similarity=0.256 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHhCCCEEEeCceEEEEEecC--Ce----EEEEEeeccCCCC-ceEEEcCEEEEccCC
Q psy14927 948 GEVAKQFQRILGKQGMQFKLGTKVTGASKSG--DN----ITVTIENVKDPTK-KEELSCDALLVCVGR 1008 (1074)
Q Consensus 948 ~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~--~~----~~v~~~~~~~~g~-~~~i~~D~vi~a~G~ 1008 (1074)
.-+.+.+.+.|++.|++|+++++|++|..++ ++ ..|.+.+ |. +.++.+|.||+|++.
T Consensus 219 ~~l~~pl~~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~----g~~~~~~~aD~VVlA~p~ 282 (474)
T TIGR02732 219 KYLTKPILEYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSK----PEGKKVIKADAYVAACDV 282 (474)
T ss_pred hhHHHHHHHHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEec----CCcceEEECCEEEECCCh
Confidence 3355667889999999999999999998643 21 2233433 22 356999999999873
No 355
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=95.02 E-value=0.15 Score=63.36 Aligned_cols=61 Identities=13% Similarity=0.093 Sum_probs=41.9
Q ss_pred CHHHHHHHHHHHHhC--------C-----CEEEeCceEEEEEecCCe-EEEEEeeccCCCCceEEEcCEEEEccCC
Q psy14927 947 DGEVAKQFQRILGKQ--------G-----MQFKLGTKVTGASKSGDN-ITVTIENVKDPTKKEELSCDALLVCVGR 1008 (1074)
Q Consensus 947 ~~~~~~~~~~~l~~~--------g-----V~i~~~~~v~~i~~~~~~-~~v~~~~~~~~g~~~~i~~D~vi~a~G~ 1008 (1074)
...+...+.+.+.+. | |+++.++.+.++..+++. ..+...+.. +++...+.++.||+|||-
T Consensus 137 G~~i~~~L~~~~~~~~~~~~~~~G~~~~~v~i~~~~~v~~L~~~~g~v~Gv~~~~~~-~g~~~~i~Ak~VVlATGG 211 (626)
T PRK07803 137 GLELIRTLQQKIVSLQQEDHAELGDYEARIKVFAECTITELLKDGGRIAGAFGYWRE-SGRFVLFEAPAVVLATGG 211 (626)
T ss_pred HHHHHHHHHHHHHhhhccccccccCCcCceEEEeCCEEEEEEEECCEEEEEEEEECC-CCeEEEEEcCeEEECCCc
Confidence 345666677766665 6 999999999998754443 333332211 354567999999999985
No 356
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=94.98 E-value=0.22 Score=61.33 Aligned_cols=59 Identities=7% Similarity=0.013 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHhCCCEEEeCceEEEEEecCCe-EEEEEeeccCCCCceEEEcCEEEEccC
Q psy14927 948 GEVAKQFQRILGKQGMQFKLGTKVTGASKSGDN-ITVTIENVKDPTKKEELSCDALLVCVG 1007 (1074)
Q Consensus 948 ~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~-~~v~~~~~~~~g~~~~i~~D~vi~a~G 1007 (1074)
..+...+.+.+.+.||+++.++.++++..+++. +.+...+.. +++...+.++.||+|||
T Consensus 136 ~~i~~~L~~~~~~~gv~i~~~~~~~~Li~~~g~v~Gv~~~~~~-~g~~~~i~AkaVVLATG 195 (566)
T PRK06452 136 MALLHTLFERTSGLNVDFYNEWFSLDLVTDNKKVVGIVAMQMK-TLTPFFFKTKAVVLATG 195 (566)
T ss_pred HHHHHHHHHHHHhCCCEEEeCcEEEEEEEECCEEEEEEEEECC-CCeEEEEEeCeEEECCC
Confidence 345556666677789999999999998865443 445544422 34456789999999998
No 357
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=94.98 E-value=0.0098 Score=50.68 Aligned_cols=31 Identities=19% Similarity=0.240 Sum_probs=27.1
Q ss_pred hhccccchHHHHHHHhh-----hhhhhccccccccc
Q psy14927 799 NTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLN 829 (1074)
Q Consensus 799 iiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~ 829 (1074)
|||||++||++|+.|++ ++||+.+..|+...
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~~~ 36 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGGRAR 36 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSGGGC
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCccee
Confidence 79999999999999999 89999998888664
No 358
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=94.97 E-value=0.064 Score=45.47 Aligned_cols=62 Identities=24% Similarity=0.360 Sum_probs=52.7
Q ss_pred ChHHHHHHHHHHHhccCHHHHHHHHHHhhChhhhhhHhhccCCHHHHHHHHHhcCChHHHHHHHHHHHhcC-ChHHHHHH
Q psy14927 49 DPVLLKWWAQYIESTEDMDLAMKYYEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAAYHLARQYENSG-QFDEAIHF 127 (1074)
Q Consensus 49 ~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~~~~vr~l~~~~~~~~a~~i~~~~~~~~~~~~la~~~~~~g-~~~~Ai~~ 127 (1074)
++..|...|..+...|+|++|+++|.++=++ .+.+..+.+.+|..|.++| ++++|+++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~---------------------~p~~~~~~~~~g~~~~~~~~~~~~A~~~ 60 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIEL---------------------DPNNAEAYYNLGLAYMKLGKDYEEAIED 60 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH---------------------STTHHHHHHHHHHHHHHTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---------------------CCCCHHHHHHHHHHHHHhCccHHHHHHH
Confidence 5778999999999999999999999887666 2345668889999999999 79999998
Q ss_pred HHHh
Q psy14927 128 YSVA 131 (1074)
Q Consensus 128 y~~a 131 (1074)
|.++
T Consensus 61 ~~~a 64 (69)
T PF13414_consen 61 FEKA 64 (69)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8765
No 359
>KOG1524|consensus
Probab=94.92 E-value=0.1 Score=59.80 Aligned_cols=110 Identities=12% Similarity=0.100 Sum_probs=81.3
Q ss_pred hhHhh-hcHHHHHHHhhcCCChHHHHHHHHHHHhccCHHHHHHHHHHhhChhhhhhHhhccCCHHHHHHHHHhcCChHHH
Q psy14927 30 PRMLL-ENTDKLEKYIIQSKDPVLLKWWAQYIESTEDMDLAMKYYEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAA 108 (1074)
Q Consensus 30 ~~~~~-~~~~~~~~~~~~~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~~~~vr~l~~~~~~~~a~~i~~~~~~~~~~ 108 (1074)
+++.. ..|+++..+........||..+|-.+-...++..++.+|+++++.+.+--+-.-.+.++++.+.+.. .
T Consensus 581 ~e~~sssKWeqavRLCrfv~eqTMWAtlAa~Av~~~~m~~~EiAYaA~~~idKVsyin~iK~ltske~~mA~~------~ 654 (737)
T KOG1524|consen 581 HEYLSSSKWEQAVRLCRFVQEQTMWATLAAVAVRKHQMQISEIAYAAALQIDKVSYINHIKALTSKEEQMAEN------S 654 (737)
T ss_pred HHHhccchHHHHHHHHHhccchHHHHHHHHHHHhhccccHHHHHHHHhhchhhHHHHHHHhccCcHHHHHHHH------H
Confidence 34444 3799999999999999999999999999999999999999999996554443333334444444332 2
Q ss_pred HHHHH------HHHhcCChHHHHHHHHHhCChHHHHHHHHHhC
Q psy14927 109 YHLAR------QYENSGQFDEAIHFYSVAGSCGNAVRLCKEQA 145 (1074)
Q Consensus 109 ~~la~------~~~~~g~~~~Ai~~y~~a~~~~~A~~la~~~~ 145 (1074)
.++++ .++..|.+.+|+.+-++-++|+.|++|+.+|.
T Consensus 655 l~~G~~~eAe~iLl~~gl~~qav~lni~m~nW~RALEl~~K~K 697 (737)
T KOG1524|consen 655 LMLGRMLEAETILLHGGLIEQAVGLNIRMHNWRRALELSQKHK 697 (737)
T ss_pred HHhccchhhhHHHHhcchHHHhhhhhhhhhhHHHHHHHHHhHH
Confidence 23332 34467788888888888888888888888883
No 360
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=94.91 E-value=0.2 Score=62.48 Aligned_cols=60 Identities=17% Similarity=0.296 Sum_probs=41.0
Q ss_pred HHHHHHHHHHhCC--CEEEeCceEEEEEecC---CeEEEEEeeccC--CCCceEEEcCEEEEccCCc
Q psy14927 950 VAKQFQRILGKQG--MQFKLGTKVTGASKSG---DNITVTIENVKD--PTKKEELSCDALLVCVGRR 1009 (1074)
Q Consensus 950 ~~~~~~~~l~~~g--V~i~~~~~v~~i~~~~---~~~~v~~~~~~~--~g~~~~i~~D~vi~a~G~~ 1009 (1074)
+.+.+.+.+.+.| |.+..+++++.++.++ ..+.+++.+.++ +|+.+++.+|.||-|-|.+
T Consensus 143 le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~v~l~~~~~~~~g~~~tv~A~~lVGaDGa~ 209 (634)
T PRK08294 143 VHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVTVTLRRTDGEHEGEEETVRAKYVVGCDGAR 209 (634)
T ss_pred HHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEEEEEEECCCCCCCceEEEEeCEEEECCCCc
Confidence 4455667776665 5788899999997543 237787775310 2444789999999987754
No 361
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=94.81 E-value=0.1 Score=64.90 Aligned_cols=56 Identities=13% Similarity=0.186 Sum_probs=40.4
Q ss_pred HHHHHHHHhCCCEEEeCceEEEEEecCCe-EEEEEeeccCCCCceEEEcCEEEEccCC
Q psy14927 952 KQFQRILGKQGMQFKLGTKVTGASKSGDN-ITVTIENVKDPTKKEELSCDALLVCVGR 1008 (1074)
Q Consensus 952 ~~~~~~l~~~gV~i~~~~~v~~i~~~~~~-~~v~~~~~~~~g~~~~i~~D~vi~a~G~ 1008 (1074)
+.+.+.+++.||+++.++.+.++..+++. +.|...+.. +|+...+.++.||+|||-
T Consensus 174 ~~L~~~~~~~gV~i~~~t~v~~Li~d~g~V~GV~~~~~~-~g~~~~i~AkaVVLATGG 230 (640)
T PRK07573 174 QALSRQIAAGTVKMYTRTEMLDLVVVDGRARGIVARNLV-TGEIERHTADAVVLATGG 230 (640)
T ss_pred HHHHHHHHhcCCEEEeceEEEEEEEeCCEEEEEEEEECC-CCcEEEEECCEEEECCCC
Confidence 44556677889999999999998754443 445554422 344567999999999985
No 362
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=94.81 E-value=0.16 Score=58.79 Aligned_cols=51 Identities=27% Similarity=0.477 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHhC-CCEEEeCceEEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccCCc
Q psy14927 948 GEVAKQFQRILGKQ-GMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRR 1009 (1074)
Q Consensus 948 ~~~~~~~~~~l~~~-gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~ 1009 (1074)
..+...+.+.+.+. |++++.++.|..++.. .|++.+ | .+.+|.||+|+|.-
T Consensus 145 ~~~~~~l~~~~~~~~Gv~i~~~t~V~~i~~~----~v~t~~----g---~i~a~~VV~A~G~~ 196 (365)
T TIGR03364 145 REAIPALAAYLAEQHGVEFHWNTAVTSVETG----TVRTSR----G---DVHADQVFVCPGAD 196 (365)
T ss_pred HHHHHHHHHHHHhcCCCEEEeCCeEEEEecC----eEEeCC----C---cEEeCEEEECCCCC
Confidence 34555666666664 9999999999999752 344332 2 36899999999964
No 363
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=94.80 E-value=0.079 Score=64.30 Aligned_cols=59 Identities=14% Similarity=0.151 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccCC
Q psy14927 948 GEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGR 1008 (1074)
Q Consensus 948 ~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~ 1008 (1074)
..+...+.....+.|++++.++.|.++..+++.+.|++.+. .|+..++.++.||.|+|.
T Consensus 155 ~rl~~~l~~~a~~~Ga~i~~~~~V~~i~~~~~~~~v~~~~~--~g~~~~i~a~~VVnAaG~ 213 (502)
T PRK13369 155 ARLVVLNALDAAERGATILTRTRCVSARREGGLWRVETRDA--DGETRTVRARALVNAAGP 213 (502)
T ss_pred HHHHHHHHHHHHHCCCEEecCcEEEEEEEcCCEEEEEEEeC--CCCEEEEEecEEEECCCc
Confidence 44555556667889999999999999988766666666552 144567999999999995
No 364
>KOG2114|consensus
Probab=94.80 E-value=0.67 Score=56.57 Aligned_cols=122 Identities=13% Similarity=0.107 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHh-------------------------------------hCHHHHHHHHHHcCCHH
Q psy14927 625 VLLKWWAQYIESTEDMDLAMKYYEEA-------------------------------------RDYLSMVRVLCFLQDFS 667 (1074)
Q Consensus 625 ~l~~~~a~~~e~~~~~~~A~~~y~~a-------------------------------------g~~~~ai~~~~~~~~~~ 667 (1074)
++++.+|.|+-..|+|++|...|+++ ....-.+.||.+++|.+
T Consensus 369 ~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~Vi~kfLdaq~IknLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~ 448 (933)
T KOG2114|consen 369 EIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSEVIKKFLDAQRIKNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVE 448 (933)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHHHHHHhcCHHHHHHHHHHHHHHHHcccccchhHHHHHHHHHHhcchH
Confidence 89999999999999999999999998 22333344455555555
Q ss_pred HHHHHHHhcCCcHH---HHHHHHHHHhcCCHHHHHHHHHHcCCHHHHHHH----hccHHHHHHHHHHhCCcccHHHHHHH
Q psy14927 668 RAAELANASGDTAA---AYHLARQYENSGQFDEAIHFYSVAGSCGNAVRL----CGQLDAVESIASELNVQSDQDLILKC 740 (1074)
Q Consensus 668 ~a~~v~~~~~~~~~---~~~~A~~~~~~g~~~~A~~~~~kag~~~~Av~m----a~~w~~a~~~A~~~~~~~~~~~~~~~ 740 (1074)
+..+..+..+.-+. ....=+.+.+.+-+++|..+-.+.++.+.++++ -+++++|+++-+..-++..-..+.++
T Consensus 449 kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~~he~vl~ille~~~ny~eAl~yi~slp~~e~l~~l~ky 528 (933)
T KOG2114|consen 449 KLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLATKFKKHEWVLDILLEDLHNYEEALRYISSLPISELLRTLNKY 528 (933)
T ss_pred HHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHHHhccCHHHHHHHHHHhcCHHHHHHHHhcCCHHHHHHHHHHH
Confidence 55544433221111 112223344444444455555555554444433 35566666666665444444555666
Q ss_pred HHHHHH
Q psy14927 741 ASYFAR 746 (1074)
Q Consensus 741 a~~~~~ 746 (1074)
++.|+.
T Consensus 529 Gk~Ll~ 534 (933)
T KOG2114|consen 529 GKILLE 534 (933)
T ss_pred HHHHHh
Confidence 666543
No 365
>PRK06996 hypothetical protein; Provisional
Probab=94.75 E-value=0.04 Score=64.79 Aligned_cols=99 Identities=11% Similarity=0.053 Sum_probs=0.0
Q ss_pred hhhhhccccchHHHHHHHhh---------hhhhhcccccccc--------------------------------------
Q psy14927 796 VVLNTLGNCAAVQANYHLAT---------KLFTQAGDKGVKL-------------------------------------- 828 (1074)
Q Consensus 796 ~VviiGgG~AGl~aA~~la~---------~l~e~~~~~g~~~-------------------------------------- 828 (1074)
+|+||||||+|+++|+.|++ +++|+.+......
T Consensus 13 dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~~~~~~r~~~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~~ 92 (398)
T PRK06996 13 DIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAASANDPRAIALSHGSRVLLETLGAWPADATPIEHIHVSQRGH 92 (398)
T ss_pred CEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCcCCCCceEEEecHHHHHHHHhCCCchhcCCcccEEEEecCCC
Q ss_pred ---------chhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEee-eEEEe--cCCeEEEEeCCCCe-eEEEcCeEEEccC
Q psy14927 829 ---------NLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNG-HGKIT--GPNTVTVIKSDGST-EEVKTKNILIATG 894 (1074)
Q Consensus 829 ---------~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g-~v~~i--d~~~~~v~~~~G~~-~~i~~d~lIIATG 894 (1074)
++........-....+...+.+.+...|+++..+ +++.+ +.+.+++++.+|.. .++++|.||-|.|
T Consensus 93 ~g~~~~~~~~~~~~~~g~~v~r~~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~~v~v~~~~~~g~~~i~a~lvIgADG 171 (398)
T PRK06996 93 FGRTLIDRDDHDVPALGYVVRYGSLVAALARAVRGTPVRWLTSTTAHAPAQDADGVTLALGTPQGARTLRARIAVQAEG 171 (398)
T ss_pred CceEEecccccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeeeeeeecCCeEEEEECCCCcceEEeeeEEEECCC
No 366
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=94.73 E-value=0.055 Score=64.88 Aligned_cols=88 Identities=15% Similarity=0.073 Sum_probs=54.5
Q ss_pred hhhhhhccccchHHHHHHHhh------hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEee-eEEEe
Q psy14927 795 QVVLNTLGNCAAVQANYHLAT------KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNG-HGKIT 867 (1074)
Q Consensus 795 ~~VviiGgG~AGl~aA~~la~------~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g-~v~~i 867 (1074)
++|+|||||..|+.+|..+.+ +++...+.. .++.. ....+.+...||+++++ .++.+
T Consensus 274 ~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~~-------~~~~~---------~~~~~~~~~~GV~i~~~~~v~~i 337 (457)
T PRK11749 274 KRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRGRE-------EMPAS---------EEEVEHAKEEGVEFEWLAAPVEI 337 (457)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcc-------cCCCC---------HHHHHHHHHCCCEEEecCCcEEE
Confidence 349999999999999999876 222221110 01111 11234566789999998 45555
Q ss_pred cCCe-----EEEEe---------------CCCCeeEEEcCeEEEccCCCCC
Q psy14927 868 GPNT-----VTVIK---------------SDGSTEEVKTKNILIATGSEVT 898 (1074)
Q Consensus 868 d~~~-----~~v~~---------------~~G~~~~i~~d~lIIATG~~p~ 898 (1074)
..+. +++.. .+|+..++.+|.||+|+|.+|.
T Consensus 338 ~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~p~ 388 (457)
T PRK11749 338 LGDEGRVTGVEFVRMELGEPDASGRRRVPIEGSEFTLPADLVIKAIGQTPN 388 (457)
T ss_pred EecCCceEEEEEEEEEecCcCCCCCcccCCCCceEEEECCEEEECccCCCC
Confidence 4322 33221 1233467999999999999984
No 367
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=94.72 E-value=0.0056 Score=60.66 Aligned_cols=122 Identities=20% Similarity=0.276 Sum_probs=85.7
Q ss_pred ChhhhhhHhhccCCHHHHHH----HHHh--cCChHHHHHHHHHHHhcCChHHHHHHHHHhCCh--HHHHHHHHHhCchHH
Q psy14927 78 DYLSMVRVLCFLQDFSRAAE----LANA--SGDTAAAYHLARQYENSGQFDEAIHFYSVAGSC--GNAVRLCKEQALDDQ 149 (1074)
Q Consensus 78 d~~~~vr~l~~~~~~~~a~~----i~~~--~~~~~~~~~la~~~~~~g~~~~Ai~~y~~a~~~--~~A~~la~~~~~~~~ 149 (1074)
+...+|+.+...+.+..+.+ +..+ ..+..-...++..|.+.+..+..++|+.....| +.|.++|+++
T Consensus 9 ~~~~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~yd~~~~~~~c~~~----- 83 (143)
T PF00637_consen 9 EISEVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNNYDLDKALRLCEKH----- 83 (143)
T ss_dssp CSCCCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSSS-CTHHHHHHHTT-----
T ss_pred CHHHHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccccCHHHHHHHHHhc-----
Confidence 34455555555555544422 2322 234555668888888888888888887765553 3444444444
Q ss_pred HHHHhhhcCchhHHHHHHHHccCChhHHHHHHHHhCChHHHHHHHHhhccCCcchHHHHHHHHHHhcCCChhhHHHhhhh
Q psy14927 150 LWNLALSAGPSEQIEAATYLETIEPDKAVLLYHKAGALHKALDLAFKLTLSNSGLVFQIKAMKCLLKSGDTNKIIFFAGV 229 (1074)
Q Consensus 150 ~~~l~~~~~~~~~~~~A~~~e~~~~~~A~~ly~kaG~~~kAl~l~~~~~~~~~~~~~~~~a~k~l~~~~~~~~~i~~a~~ 229 (1074)
+-++.|+.+|.+.|++.+|++++.+ .++++.+++++..
T Consensus 84 ----------------------~l~~~a~~Ly~~~~~~~~al~i~~~--------------------~~~~~~a~e~~~~ 121 (143)
T PF00637_consen 84 ----------------------GLYEEAVYLYSKLGNHDEALEILHK--------------------LKDYEEAIEYAKK 121 (143)
T ss_dssp ----------------------TSHHHHHHHHHCCTTHTTCSSTSSS--------------------THCSCCCTTTGGG
T ss_pred ----------------------chHHHHHHHHHHcccHHHHHHHHHH--------------------HccHHHHHHHHHh
Confidence 4468899999999999999997444 7889999999999
Q ss_pred cchHHHHHHHHHHHhcC
Q psy14927 230 SRMKEIYVMAANYLQSS 246 (1074)
Q Consensus 230 ~r~~~l~~~aa~yl~~~ 246 (1074)
+.++++|..+++|+...
T Consensus 122 ~~~~~l~~~l~~~~l~~ 138 (143)
T PF00637_consen 122 VDDPELWEQLLKYCLDS 138 (143)
T ss_dssp CSSSHHHHHHHHHHCTS
T ss_pred cCcHHHHHHHHHHHHhc
Confidence 99999999999998765
No 368
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=94.62 E-value=0.45 Score=51.22 Aligned_cols=26 Identities=12% Similarity=-0.178 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHh
Q psy14927 51 VLLKWWAQYIESTEDMDLAMKYYEEA 76 (1074)
Q Consensus 51 ~l~~~~a~~~e~~~~~~~A~~~y~~a 76 (1074)
..+...|..+...|++++|...|..+
T Consensus 71 ~a~~~la~~~~~~~~~~~A~~~~~~~ 96 (235)
T TIGR03302 71 QAQLDLAYAYYKSGDYAEAIAAADRF 96 (235)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 35566688888888888888888775
No 369
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=94.61 E-value=4.2 Score=45.80 Aligned_cols=193 Identities=26% Similarity=0.313 Sum_probs=119.0
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHhccCHHHHHHHHHHhhChhhhhhHhhccCCHHHHHHHHHhcCChHHHHHHH-HHH
Q psy14927 37 TDKLEKYIIQSKDPVLLKWWAQYIESTEDMDLAMKYYEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAAYHLA-RQY 115 (1074)
Q Consensus 37 ~~~~~~~~~~~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~~~~vr~l~~~~~~~~a~~i~~~~~~~~~~~~la-~~~ 115 (1074)
-.+...++.+...|-++..=||..+-.|+++.|-+-|+.--|... .|+|.--|-+=+|.++ |+.+++.+-| +-+
T Consensus 107 t~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPE-tRllGLRgLyleAqr~----GareaAr~yAe~Aa 181 (531)
T COG3898 107 TARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDPE-TRLLGLRGLYLEAQRL----GAREAARHYAERAA 181 (531)
T ss_pred HHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcChH-HHHHhHHHHHHHHHhc----ccHHHHHHHHHHHH
Confidence 345566777777777888889999999999999999999777644 4554444444333332 4455544333 333
Q ss_pred HhcCC----hHHHHHHHHHhCChHHHHHHHHHhCchHHHHHHhhhcCchhHHHHHHHHccC--ChhHHHHHHHHhC----
Q psy14927 116 ENSGQ----FDEAIHFYSVAGSCGNAVRLCKEQALDDQLWNLALSAGPSEQIEAATYLETI--EPDKAVLLYHKAG---- 185 (1074)
Q Consensus 116 ~~~g~----~~~Ai~~y~~a~~~~~A~~la~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~~--~~~~A~~ly~kaG---- 185 (1074)
++.-. ...-++-.+.+|+|+.|++|.... ..+...|.. +-.+|+.|=.||+
T Consensus 182 ~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~-------------------~~~~vie~~~aeR~rAvLLtAkA~s~ld 242 (531)
T COG3898 182 EKAPQLPWAARATLEARCAAGDWDGALKLVDAQ-------------------RAAKVIEKDVAERSRAVLLTAKAMSLLD 242 (531)
T ss_pred hhccCCchHHHHHHHHHHhcCChHHHHHHHHHH-------------------HHHHhhchhhHHHHHHHHHHHHHHHHhc
Confidence 33322 245577788899999999887665 333444442 2355666666654
Q ss_pred -ChHHHHHHHHhhccCCcchH-HHHHHHHHHhcCCChhhHHHhhhhcchHHHHHHHHHHHhcCCCCCChhHHHHHHHHHH
Q psy14927 186 -ALHKALDLAFKLTLSNSGLV-FQIKAMKCLLKSGDTNKIIFFAGVSRMKEIYVMAANYLQSSDWKSQPELLKSIISFYS 263 (1074)
Q Consensus 186 -~~~kAl~l~~~~~~~~~~~~-~~~~a~k~l~~~~~~~~~i~~a~~~r~~~l~~~aa~yl~~~~~~~~~~~~~~i~~~Y~ 263 (1074)
.+..|.+.+++......++. --+-|.+.|.+.|++ -+++..|++- |...|.- .|..+|.
T Consensus 243 adp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~----------------rKg~~ilE~a-WK~ePHP--~ia~lY~ 303 (531)
T COG3898 243 ADPASARDDALEANKLAPDLVPAAVVAARALFRDGNL----------------RKGSKILETA-WKAEPHP--DIALLYV 303 (531)
T ss_pred CChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccch----------------hhhhhHHHHH-HhcCCCh--HHHHHHH
Confidence 34555665555432222221 135677777777766 4566677776 7776532 5677887
Q ss_pred ccCCHHHHH
Q psy14927 264 KGKAPHLLA 272 (1074)
Q Consensus 264 k~~~~~~aa 272 (1074)
.++.-+.+-
T Consensus 304 ~ar~gdta~ 312 (531)
T COG3898 304 RARSGDTAL 312 (531)
T ss_pred HhcCCCcHH
Confidence 777666544
No 370
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=94.60 E-value=0.19 Score=62.14 Aligned_cols=60 Identities=13% Similarity=0.100 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHH----hCCCEEEeCceEEEEEecCC-e-EEEEEeeccCCCCceEEEcCEEEEccCC
Q psy14927 948 GEVAKQFQRILG----KQGMQFKLGTKVTGASKSGD-N-ITVTIENVKDPTKKEELSCDALLVCVGR 1008 (1074)
Q Consensus 948 ~~~~~~~~~~l~----~~gV~i~~~~~v~~i~~~~~-~-~~v~~~~~~~~g~~~~i~~D~vi~a~G~ 1008 (1074)
..+...+.+.++ +.||+++.++.+.++..+++ . +.|...+.. +++...+.++.||+|||-
T Consensus 129 ~~i~~~L~~~~~~~~~~~gV~i~~~t~v~~Li~dd~grV~GV~~~~~~-~g~~~~i~AkaVVLATGG 194 (603)
T TIGR01811 129 QQLLLALDSALRRQIAAGLVEKYEGWEMLDIIVVDGNRARGIIARNLV-TGEIETHSADAVILATGG 194 (603)
T ss_pred hHHHHHHHHHHHhhhccCCcEEEeCcEEEEEEEcCCCEEEEEEEEECC-CCcEEEEEcCEEEECCCC
Confidence 344444444443 34899999999999875333 2 445554422 344567899999999976
No 371
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=94.57 E-value=0.067 Score=63.71 Aligned_cols=48 Identities=27% Similarity=0.237 Sum_probs=35.4
Q ss_pred HHHHhhhC---CeEEEee-eEEEec---------CCeEEEEeCCCCeeEEEcCeEEEccCCCC
Q psy14927 848 IAHLFKSN---KVTQLNG-HGKITG---------PNTVTVIKSDGSTEEVKTKNILIATGSEV 897 (1074)
Q Consensus 848 ~~~~l~~~---gV~~~~g-~v~~id---------~~~~~v~~~~G~~~~i~~d~lIIATG~~p 897 (1074)
+.+.+... +|+++.+ +++.++ ...++|++.+| .++++|.||-|-|...
T Consensus 123 L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v~v~~~~g--~~i~a~llVgADG~~S 183 (437)
T TIGR01989 123 LYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWVHITLSDG--QVLYTKLLIGADGSNS 183 (437)
T ss_pred HHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCceEEEEcCC--CEEEeeEEEEecCCCC
Confidence 34444554 4999988 566663 34577888888 6899999999999975
No 372
>KOG1126|consensus
Probab=94.53 E-value=0.31 Score=58.05 Aligned_cols=71 Identities=23% Similarity=0.292 Sum_probs=53.0
Q ss_pred cCCHHHHHHHHHHcCcccchhhhHhh---------hcHHHHHHHhhcC--CChHHHHHH---HHHHHhccCHHHHHHHHH
Q psy14927 9 NGDIDRAIRMFEKAETHQQHVPRMLL---------ENTDKLEKYIIQS--KDPVLLKWW---AQYIESTEDMDLAMKYYE 74 (1074)
Q Consensus 9 ~g~~~eA~~~Ye~~~~~~~~~~~~~~---------~~~~~~~~~~~~~--~~~~l~~~~---a~~~e~~~~~~~A~~~y~ 74 (1074)
+++.+.|++.++++-+.|.....-|+ +.++++..+..+. -+|.-.+.| |-.+..+++++.|+-.|.
T Consensus 434 Qkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fq 513 (638)
T KOG1126|consen 434 QKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQ 513 (638)
T ss_pred hhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHH
Confidence 67899999999999999966655553 3466666666662 345544444 788888999999999998
Q ss_pred HhhCh
Q psy14927 75 EARDY 79 (1074)
Q Consensus 75 ~a~d~ 79 (1074)
+|-++
T Consensus 514 kA~~I 518 (638)
T KOG1126|consen 514 KAVEI 518 (638)
T ss_pred hhhcC
Confidence 88877
No 373
>PRK04841 transcriptional regulator MalT; Provisional
Probab=94.52 E-value=4.7 Score=52.85 Aligned_cols=253 Identities=11% Similarity=-0.007 Sum_probs=132.9
Q ss_pred hHHHHHHHHHHHhccCHHHHHHHHHHhhChhhhhhHhhcc-------CCHHHHHHHHHhc------CChHHHHHHHHHHH
Q psy14927 50 PVLLKWWAQYIESTEDMDLAMKYYEEARDYLSMVRVLCFL-------QDFSRAAELANAS------GDTAAAYHLARQYE 116 (1074)
Q Consensus 50 ~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~~~~vr~l~~~-------~~~~~a~~i~~~~------~~~~~~~~la~~~~ 116 (1074)
..|++..|.|+...|++.+|+.++..++|+....+++... |+++.+......- ++.......+..+.
T Consensus 341 ~~lh~raa~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~ 420 (903)
T PRK04841 341 PELHRAAAEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQ 420 (903)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHH
Confidence 4688999999999999999999999999998888775543 4454444443321 12222334444444
Q ss_pred hcCChHHHHHHHHHhCChHHHHHHHHHhCchHHHHHHhhhcCchhHHHHHHHHccCChhHHHHHHHHhCChHHHHHHHHh
Q psy14927 117 NSGQFDEAIHFYSVAGSCGNAVRLCKEQALDDQLWNLALSAGPSEQIEAATYLETIEPDKAVLLYHKAGALHKALDLAFK 196 (1074)
Q Consensus 117 ~~g~~~~Ai~~y~~a~~~~~A~~la~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~~~~~~A~~ly~kaG~~~kAl~l~~~ 196 (1074)
..|++++|...+..+ .+.....+ ....+.....+. -....++...|++.+|..++.+
T Consensus 421 ~~g~~~~a~~~l~~a------~~~~~~~~---------~~~~~~~~~~~~--------~~~a~~~~~~g~~~~A~~~~~~ 477 (903)
T PRK04841 421 SQHRYSEVNTLLARA------EQELKDRN---------IELDGTLQAEFN--------ALRAQVAINDGDPEEAERLAEL 477 (903)
T ss_pred HCCCHHHHHHHHHHH------HHhccccC---------cccchhHHHHHH--------HHHHHHHHhCCCHHHHHHHHHH
Confidence 555665555554322 11000000 000000000000 0012345556667666666554
Q ss_pred hccCCcchHHHHHHHHHHhcCCChhhHHHhhhhcchHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHccCCHHHHHHHHH
Q psy14927 197 LTLSNSGLVFQIKAMKCLLKSGDTNKIIFFAGVSRMKEIYVMAANYLQSSDWKSQPELLKSIISFYSKGKAPHLLANFYV 276 (1074)
Q Consensus 197 ~~~~~~~~~~~~~a~k~l~~~~~~~~~i~~a~~~r~~~l~~~aa~yl~~~~~~~~~~~~~~i~~~Y~k~~~~~~aa~~~~ 276 (1074)
. ... ...++.. .... -...++..+....+.+.-...+......+...+.....+....
T Consensus 478 a-------------l~~-~~~~~~~--~~~~------a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~ 535 (903)
T PRK04841 478 A-------------LAE-LPLTWYY--SRIV------ATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLL 535 (903)
T ss_pred H-------------Hhc-CCCccHH--HHHH------HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHH
Confidence 2 100 0111110 0000 0011111111111111111334445555565566555566666
Q ss_pred HHHhHHHHhhcCHHHHHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHhhcCChHHHhhHHHHHHHHHhhcc
Q psy14927 277 SCAQVEIDEFGNYEKGLGALNEAKRCLLKHNDS-MYETLKSSVVEKLAEVEIDEFGNYEKGLGALNEAKRCLLKHN 351 (1074)
Q Consensus 277 ~~a~~ei~e~~~y~~a~~~l~~a~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 351 (1074)
..+... ...|++..|...+.+++......+.. .+. ...+......++.. .|+++.|...+.++......++
T Consensus 536 ~la~~~-~~~G~~~~A~~~~~~al~~~~~~~~~~~~~--~~~~~~~la~~~~~-~G~~~~A~~~~~~al~~~~~~~ 607 (903)
T PRK04841 536 QQSEIL-FAQGFLQAAYETQEKAFQLIEEQHLEQLPM--HEFLLRIRAQLLWE-WARLDEAEQCARKGLEVLSNYQ 607 (903)
T ss_pred HHHHHH-HHCCCHHHHHHHHHHHHHHHHHhccccccH--HHHHHHHHHHHHHH-hcCHHHHHHHHHHhHHhhhccC
Confidence 677777 78999999999999999988876532 121 11111123445556 6999999998888777655444
No 374
>KOG2002|consensus
Probab=94.48 E-value=5.2 Score=50.10 Aligned_cols=215 Identities=17% Similarity=0.132 Sum_probs=105.9
Q ss_pred CChHHHHHHHHHHHhccCHHHHHHHHHHhhCh------------------hhhhhHhhccCCHHHHHHHHHh-----cCC
Q psy14927 48 KDPVLLKWWAQYIESTEDMDLAMKYYEEARDY------------------LSMVRVLCFLQDFSRAAELANA-----SGD 104 (1074)
Q Consensus 48 ~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~------------------~~~vr~l~~~~~~~~a~~i~~~-----~~~ 104 (1074)
-.|+++...|-.....|++.+|...|.+|... .++.|++.++++++.|.++.++ ++=
T Consensus 450 ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~Y 529 (1018)
T KOG2002|consen 450 IPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGY 529 (1018)
T ss_pred CCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchh
Confidence 35667777777777777777777777765443 1456666666677666665552 223
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHhCChHHHHHHHHHh-C---ch--------HHHHHHh--hhcCchhHH--HHHH-
Q psy14927 105 TAAAYHLARQYENSGQFDEAIHFYSVAGSCGNAVRLCKEQ-A---LD--------DQLWNLA--LSAGPSEQI--EAAT- 167 (1074)
Q Consensus 105 ~~~~~~la~~~~~~g~~~~Ai~~y~~a~~~~~A~~la~~~-~---~~--------~~~~~l~--~~~~~~~~~--~~A~- 167 (1074)
+++..+++-+-...|...+|+.++..+...+...=-+... | +- ..+..+. ....++.|. ..|.
T Consensus 530 Id~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~ 609 (1018)
T KOG2002|consen 530 IDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNV 609 (1018)
T ss_pred HHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHH
Confidence 3344455544455566666666666665555432222111 0 00 0000010 011112222 2332
Q ss_pred HHcc-----CChhHHHHHHHHhCCh-HHHHHHHHhhccCCcchHHHHHHHHHHhcCCChhhHHHhhhhcchHHHHHHHHH
Q psy14927 168 YLET-----IEPDKAVLLYHKAGAL-HKALDLAFKLTLSNSGLVFQIKAMKCLLKSGDTNKIIFFAGVSRMKEIYVMAAN 241 (1074)
Q Consensus 168 ~~e~-----~~~~~A~~ly~kaG~~-~kAl~l~~~~~~~~~~~~~~~~a~k~l~~~~~~~~~i~~a~~~r~~~l~~~aa~ 241 (1074)
||+. .+.+++-.+|.||=+. .++|+.-=+.-+.-+| -.=+|+..|.++.+..+-...|.
T Consensus 610 ~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANG------IgiVLA~kg~~~~A~dIFsqVrE--------- 674 (1018)
T KOG2002|consen 610 YIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANG------IGIVLAEKGRFSEARDIFSQVRE--------- 674 (1018)
T ss_pred HHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccc------hhhhhhhccCchHHHHHHHHHHH---------
Confidence 3332 2234444444433222 2332221000000011 11234446666555444333332
Q ss_pred HHhcCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHhHH
Q psy14927 242 YLQSSDWKSQPELLKSIISFYSKGKAPHLLANFYVSCAQVE 282 (1074)
Q Consensus 242 yl~~~~~~~~~~~~~~i~~~Y~k~~~~~~aa~~~~~~a~~e 282 (1074)
.|...++..-+|..+|.-.|+|..|...|..|-..-
T Consensus 675 -----a~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf 710 (1018)
T KOG2002|consen 675 -----ATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKF 710 (1018)
T ss_pred -----HHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 234455666778889999999999998888885543
No 375
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=94.48 E-value=0.19 Score=62.14 Aligned_cols=61 Identities=8% Similarity=0.034 Sum_probs=43.5
Q ss_pred CHHHHHHHHHHHHhCCCEEEeCceEEEEEecC-C-eEEEEEeeccCCCCceEEEcCEEEEccCC
Q psy14927 947 DGEVAKQFQRILGKQGMQFKLGTKVTGASKSG-D-NITVTIENVKDPTKKEELSCDALLVCVGR 1008 (1074)
Q Consensus 947 ~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~-~-~~~v~~~~~~~~g~~~~i~~D~vi~a~G~ 1008 (1074)
+..+...+.+.+.+.||+++.++.+.++..++ + .+.+...+.. +|+...+.+..||+|||-
T Consensus 148 G~~i~~~L~~~~~~~gi~i~~~~~v~~Li~~~~g~v~Gv~~~~~~-~g~~~~i~AkaVVLATGG 210 (598)
T PRK09078 148 GHAILHTLYQQSLKHNAEFFIEYFALDLIMDDGGVCRGVVAWNLD-DGTLHRFRAHMVVLATGG 210 (598)
T ss_pred HHHHHHHHHHHHhhcCCEEEEeEEEEEEEEcCCCEEEEEEEEECC-CCcEEEEEcCEEEECCCC
Confidence 34566677777788999999999999987543 3 2444443322 355568899999999874
No 376
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=94.47 E-value=0.034 Score=64.83 Aligned_cols=37 Identities=11% Similarity=-0.017 Sum_probs=28.0
Q ss_pred CCCCC-CCCCEEEecccCCCCCcHHHHHHHHHHHHHHhh
Q psy14927 1034 SRFQT-VIPNIFAIGDCIHGPMLAHKAEDEGIVCVEGIA 1071 (1074)
Q Consensus 1034 ~~~~t-s~~~IyAiGD~~~~~~~~~~A~~~G~~aA~~I~ 1071 (1074)
.++++ ..||+|.+|=+++.- --..|..+|-+|+.|++
T Consensus 322 ~~l~~k~~~~lf~AGQi~G~~-GY~Eaaa~Gl~agina~ 359 (433)
T TIGR00137 322 ASLHFKDRQTLFFAGQLTGVE-GYVASTAGGWLAGINAA 359 (433)
T ss_pred HHhccCCCCCEEECcccccch-HHHHHHHHHHHHHHHHH
Confidence 45666 689999999987653 34567888888888765
No 377
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=94.41 E-value=0.19 Score=57.99 Aligned_cols=85 Identities=13% Similarity=0.063 Sum_probs=63.5
Q ss_pred HhhhcCCHHHHHHHHHHcCcccchhhhHhhhcHHHHHHHhhcCCChHHHHHHHHHHHhccCHHHHHHHHHHhhChhhhhh
Q psy14927 5 ETMKNGDIDRAIRMFEKAETHQQHVPRMLLENTDKLEKYIIQSKDPVLLKWWAQYIESTEDMDLAMKYYEEARDYLSMVR 84 (1074)
Q Consensus 5 ~~~~~g~~~eA~~~Ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~~~~vr 84 (1074)
++-..|+|++|+.+|.++-..+ ++++..+..+|..+...|++++|+.+|.++=+.
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~~~--------------------P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l----- 65 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAIDLD--------------------PNNAELYADRAQANIKLGNFTEAVADANKAIEL----- 65 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHHhC--------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----
Confidence 4556788888888887776433 345677788888888888888888777554333
Q ss_pred HhhccCCHHHHHHHHHhcCChHHHHHHHHHHHhcCChHHHHHHHHH
Q psy14927 85 VLCFLQDFSRAAELANASGDTAAAYHLARQYENSGQFDEAIHFYSV 130 (1074)
Q Consensus 85 ~l~~~~~~~~a~~i~~~~~~~~~~~~la~~~~~~g~~~~Ai~~y~~ 130 (1074)
.+.+..+.+.+|..|...|++++|++.|.+
T Consensus 66 ----------------~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~ 95 (356)
T PLN03088 66 ----------------DPSLAKAYLRKGTACMKLEEYQTAKAALEK 95 (356)
T ss_pred ----------------CcCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 234667788999999999999999987654
No 378
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=94.39 E-value=0.29 Score=60.58 Aligned_cols=62 Identities=11% Similarity=0.032 Sum_probs=42.8
Q ss_pred CHHHHHHHHHHHHhCCCEEEeCceEEEEEecC-C-eEEEEEeeccCCCCceEEEcCEEEEccCCc
Q psy14927 947 DGEVAKQFQRILGKQGMQFKLGTKVTGASKSG-D-NITVTIENVKDPTKKEELSCDALLVCVGRR 1009 (1074)
Q Consensus 947 ~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~-~-~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~ 1009 (1074)
+..+...+.+...+.||+++.++.+.++..++ + ...+...+.. +|+...+.++.||+|+|--
T Consensus 147 G~~l~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~-~g~~~~i~AkaVILATGG~ 210 (591)
T PRK07057 147 GHALLHTLYQQNVAAKTQFFVEWMALDLIRDADGDVLGVTALEME-TGDVYILEAKTTLFATGGA 210 (591)
T ss_pred hHHHHHHHHHHHHhcCCEEEeCcEEEEEEEcCCCeEEEEEEEEcC-CCeEEEEECCeEEECCCCc
Confidence 34566666677778899999999999977532 3 2445443322 3545678899999999853
No 379
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=94.36 E-value=0.22 Score=48.41 Aligned_cols=84 Identities=17% Similarity=0.213 Sum_probs=65.6
Q ss_pred CChHHHHHHHHHHHhccCHHHHHHHHHHhhCh--------hhhhhHhhccCCHHHHHHHHH-----hcCChHHHHHHHHH
Q psy14927 48 KDPVLLKWWAQYIESTEDMDLAMKYYEEARDY--------LSMVRVLCFLQDFSRAAELAN-----ASGDTAAAYHLARQ 114 (1074)
Q Consensus 48 ~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~--------~~~vr~l~~~~~~~~a~~i~~-----~~~~~~~~~~la~~ 114 (1074)
++......+|..+...|++++|.++|..+-.. ..+..++..+|++++|..+.+ .+.+....+.+|..
T Consensus 15 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~ 94 (135)
T TIGR02552 15 EQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAEC 94 (135)
T ss_pred hhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 44566778888899999999999999886442 235555778889998887655 24567788899999
Q ss_pred HHhcCChHHHHHHHHHh
Q psy14927 115 YENSGQFDEAIHFYSVA 131 (1074)
Q Consensus 115 ~~~~g~~~~Ai~~y~~a 131 (1074)
|...|++++|+++|.++
T Consensus 95 ~~~~g~~~~A~~~~~~a 111 (135)
T TIGR02552 95 LLALGEPESALKALDLA 111 (135)
T ss_pred HHHcCCHHHHHHHHHHH
Confidence 99999999999988644
No 380
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=94.31 E-value=0.11 Score=65.43 Aligned_cols=57 Identities=12% Similarity=0.293 Sum_probs=43.3
Q ss_pred CHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccCCcc
Q psy14927 947 DGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRP 1010 (1074)
Q Consensus 947 ~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p 1010 (1074)
+..+...+.+.+.+ |++++.++.|+.+...++++.|.+.+ +..+.+|.||+|+|...
T Consensus 407 p~~l~~aL~~~a~~-Gv~i~~~~~V~~i~~~~~~~~v~t~~------g~~~~ad~VV~A~G~~s 463 (662)
T PRK01747 407 PAELCRALLALAGQ-QLTIHFGHEVARLEREDDGWQLDFAG------GTLASAPVVVLANGHDA 463 (662)
T ss_pred HHHHHHHHHHhccc-CcEEEeCCEeeEEEEeCCEEEEEECC------CcEEECCEEEECCCCCc
Confidence 34566777777778 99999999999998766665554332 45678999999999754
No 381
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=94.30 E-value=0.22 Score=61.86 Aligned_cols=60 Identities=7% Similarity=-0.016 Sum_probs=42.9
Q ss_pred CHHHHHHHHHHHHhCCCEEEeCceEEEEEe-cCCe-EEEEEeeccCCCCceEEEcCEEEEccC
Q psy14927 947 DGEVAKQFQRILGKQGMQFKLGTKVTGASK-SGDN-ITVTIENVKDPTKKEELSCDALLVCVG 1007 (1074)
Q Consensus 947 ~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~-~~~~-~~v~~~~~~~~g~~~~i~~D~vi~a~G 1007 (1074)
+..+...+.+.+.+.||+++.++.+.++.. +++. ..+...+.. +|+...+.++.||+|||
T Consensus 165 G~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~-~g~~~~i~AkaVVLATG 226 (617)
T PTZ00139 165 GHAMLHTLYGQSLKYDCNFFIEYFALDLIMDEDGECRGVIAMSME-DGSIHRFRAHYTVIATG 226 (617)
T ss_pred HHHHHHHHHHHHHhCCCEEEeceEEEEEEECCCCEEEEEEEEECC-CCeEEEEECCcEEEeCC
Confidence 346667777777889999999999999765 3333 344443322 36567889999999995
No 382
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=94.30 E-value=0.31 Score=60.25 Aligned_cols=62 Identities=13% Similarity=0.034 Sum_probs=41.5
Q ss_pred CHHHHHHHHHHHHh-CCCEEEeCceEEEEEecCCe-EEEEEeeccCCCCceEEEcCEEEEccCCc
Q psy14927 947 DGEVAKQFQRILGK-QGMQFKLGTKVTGASKSGDN-ITVTIENVKDPTKKEELSCDALLVCVGRR 1009 (1074)
Q Consensus 947 ~~~~~~~~~~~l~~-~gV~i~~~~~v~~i~~~~~~-~~v~~~~~~~~g~~~~i~~D~vi~a~G~~ 1009 (1074)
+..+...+.+.+.+ .||+++.++.+.++..+++. +.+...+.. +++...+.++.||+|+|--
T Consensus 136 G~~i~~~L~~~~~~~~gv~i~~~~~v~~Li~~~g~v~Gv~~~~~~-~g~~~~i~Ak~VIlATGG~ 199 (577)
T PRK06069 136 GFYIMHTLYSRALRFDNIHFYDEHFVTSLIVENGVFKGVTAIDLK-RGEFKVFQAKAGIIATGGA 199 (577)
T ss_pred hHHHHHHHHHHHHhcCCCEEEECCEEEEEEEECCEEEEEEEEEcC-CCeEEEEECCcEEEcCchh
Confidence 34466666666655 69999999999998754443 334333311 2444578999999999864
No 383
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=94.24 E-value=0.24 Score=57.97 Aligned_cols=64 Identities=28% Similarity=0.402 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHhCCCEEEeCceEEEEEec--CCe---EEEEEeeccCCCCceEEE---cCEEEEccCCcccCCc
Q psy14927 948 GEVAKQFQRILGKQGMQFKLGTKVTGASKS--GDN---ITVTIENVKDPTKKEELS---CDALLVCVGRRPYTHN 1014 (1074)
Q Consensus 948 ~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~--~~~---~~v~~~~~~~~g~~~~i~---~D~vi~a~G~~p~~~~ 1014 (1074)
+.+...+.+.|+++||.|.++++|+.|.-+ ++. ..+.+.. +|+...|+ -|.||+..|..-....
T Consensus 207 eSii~Pl~~~L~~~GV~F~~~t~V~di~~~~~~~~~~~~~i~~~~---~g~~~~i~l~~~DlV~vT~GS~t~~s~ 278 (500)
T PF06100_consen 207 ESIILPLIRYLKSQGVDFRFNTKVTDIDFDITGDKKTATRIHIEQ---DGKEETIDLGPDDLVFVTNGSMTEGST 278 (500)
T ss_pred HHHHHHHHHHHHHCCCEEECCCEEEEEEEEccCCCeeEEEEEEEc---CCCeeEEEeCCCCEEEEECCccccccc
Confidence 567778889999999999999999998743 222 2344443 45555554 7999999997654443
No 384
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=94.24 E-value=0.31 Score=58.66 Aligned_cols=54 Identities=17% Similarity=0.298 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHh----CC--CEEEeCceEEEEEecCC-eEEEEEeeccCCCCceEEEcCEEEEccCCc
Q psy14927 949 EVAKQFQRILGK----QG--MQFKLGTKVTGASKSGD-NITVTIENVKDPTKKEELSCDALLVCVGRR 1009 (1074)
Q Consensus 949 ~~~~~~~~~l~~----~g--V~i~~~~~v~~i~~~~~-~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~ 1009 (1074)
.+...+.+.+++ .| |++++++.|+.|...++ ...|++.+ + ++.+|.||+|+|.-
T Consensus 212 ~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~~~~~~V~T~~------G-~i~A~~VVvaAG~~ 272 (497)
T PTZ00383 212 KLSESFVKHARRDALVPGKKISINLNTEVLNIERSNDSLYKIHTNR------G-EIRARFVVVSACGY 272 (497)
T ss_pred HHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecCCCeEEEEECC------C-EEEeCEEEECcChh
Confidence 566777777887 77 88999999999987633 34554332 2 69999999999854
No 385
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=94.19 E-value=0.068 Score=61.70 Aligned_cols=88 Identities=16% Similarity=-0.035 Sum_probs=54.4
Q ss_pred hhhhhhccccchHHHHHHHhh------hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEee-eEEEe
Q psy14927 795 QVVLNTLGNCAAVQANYHLAT------KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNG-HGKIT 867 (1074)
Q Consensus 795 ~~VviiGgG~AGl~aA~~la~------~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g-~v~~i 867 (1074)
++|||||+|+.|+.+|..+.. ++++..+. .. ..........+...||+++++ .++.+
T Consensus 173 ~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~~----------~~------~~~~~~~~~~l~~~gi~i~~~~~v~~i 236 (352)
T PRK12770 173 KKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRTI----------NE------APAGKYEIERLIARGVEFLELVTPVRI 236 (352)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecch----------hh------CCCCHHHHHHHHHcCCEEeeccCceee
Confidence 349999999999999988865 22221110 00 001112334577789999998 45555
Q ss_pred cCCe-E-EEEe------------------CCCCeeEEEcCeEEEccCCCCC
Q psy14927 868 GPNT-V-TVIK------------------SDGSTEEVKTKNILIATGSEVT 898 (1074)
Q Consensus 868 d~~~-~-~v~~------------------~~G~~~~i~~d~lIIATG~~p~ 898 (1074)
..+. + .|.+ .+|...++.+|.||+|+|.+|.
T Consensus 237 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vi~a~G~~p~ 287 (352)
T PRK12770 237 IGEGRVEGVELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVVFAIGEIPT 287 (352)
T ss_pred ecCCcEeEEEEEEEEecCcCcccCcCceecCCCeEEEECCEEEECcccCCC
Confidence 4322 1 2221 1344468999999999999984
No 386
>PRK07512 L-aspartate oxidase; Provisional
Probab=94.13 E-value=0.24 Score=60.22 Aligned_cols=151 Identities=10% Similarity=0.040 Sum_probs=0.0
Q ss_pred hhhhhccccchHHHHHHHhh---hhhhhccc-cccccchhh--------hhhhhhHHHhhhhhhH---------------
Q psy14927 796 VVLNTLGNCAAVQANYHLAT---KLFTQAGD-KGVKLNLET--------MMGTKSAAVKALTGGI--------------- 848 (1074)
Q Consensus 796 ~VviiGgG~AGl~aA~~la~---~l~e~~~~-~g~~~~~~~--------~~~~~~~~~~~l~~~~--------------- 848 (1074)
+|||||||.||+.||+.++. +++++.+. .++.-.+.. .........+++...-
T Consensus 11 DVlVIG~G~AGl~AAl~Aa~~~V~lleK~~~~~gg~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~~~g~~d~~~v~~~~~~ 90 (513)
T PRK07512 11 RPVIVGGGLAGLMAALKLAPRPVVVLSPAPLGEGASSAWAQGGIAAALGPDDSPALHAADTLAAGAGLCDPAVAALITAE 90 (513)
T ss_pred CEEEECchHHHHHHHHHhCcCCEEEEECCCCCCCcchHHhhhccccccCCCCCHHHHHHHHHHhhCCCCCHHHHHHHHHH
Q ss_pred ----HHHhhhCCeEEEeeeEEEecCCeEEEEeCCCCeeEEEcCeEEEccCCCCCCCCCCCCCCcceechhhHhcchHhhH
Q psy14927 849 ----AHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGIEVDEETIVSSTGALSLKKGSV 924 (1074)
Q Consensus 849 ----~~~l~~~gV~~~~g~v~~id~~~~~v~~~~G~~~~i~~d~lIIATG~~p~~ipgi~~~~~~v~t~~~~~~~~~A~~ 924 (1074)
.+++.+.||.|-.. ...........| -.+..++-..|...
T Consensus 91 s~~~i~wL~~~Gv~f~~~-----~~G~~~~~~~~~----~~~~r~~~~~g~~~--------------------------- 134 (513)
T PRK07512 91 APAAIEDLLRLGVPFDRD-----ADGRLALGLEAA----HSRRRIVHVGGDGA--------------------------- 134 (513)
T ss_pred HHHHHHHHHHhCCccccC-----CCCccccccccC----ccCCcEEEcCCCCC---------------------------
Q ss_pred HhhcCCcEEEEecCCccCCCCCCHHHHHHHHHHHHhC-CCEEEeCceEEEEEecCCe-EEEEEeeccCCCCceEEEcCEE
Q psy14927 925 WGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQ-GMQFKLGTKVTGASKSGDN-ITVTIENVKDPTKKEELSCDAL 1002 (1074)
Q Consensus 925 l~~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~-gV~i~~~~~v~~i~~~~~~-~~v~~~~~~~~g~~~~i~~D~v 1002 (1074)
+..+...+.+.+.+. ||+++.++.+.++..+++. +.+...+ ++....+.++.|
T Consensus 135 ----------------------G~~l~~~L~~~~~~~~gV~i~~~~~v~~Li~~~g~v~Gv~~~~---~~~~~~i~Ak~V 189 (513)
T PRK07512 135 ----------------------GAAIMRALIAAVRATPSITVLEGAEARRLLVDDGAVAGVLAAT---AGGPVVLPARAV 189 (513)
T ss_pred ----------------------HHHHHHHHHHHHHhCCCCEEEECcChhheeecCCEEEEEEEEe---CCeEEEEECCEE
Q ss_pred EEccC
Q psy14927 1003 LVCVG 1007 (1074)
Q Consensus 1003 i~a~G 1007 (1074)
|+|+|
T Consensus 190 VLATG 194 (513)
T PRK07512 190 VLATG 194 (513)
T ss_pred EEcCC
No 387
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=94.06 E-value=0.085 Score=63.00 Aligned_cols=88 Identities=11% Similarity=0.018 Sum_probs=53.4
Q ss_pred hhhhhhccccchHHHHHHHhh-----hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEee-eEEEec
Q psy14927 795 QVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNG-HGKITG 868 (1074)
Q Consensus 795 ~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g-~v~~id 868 (1074)
++|||||||..|+.+|..+.+ +++...... .++.. ....+.+...||+|+++ .++.+.
T Consensus 273 k~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~~-------~~~~~---------~~~~~~l~~~GV~~~~~~~~~~i~ 336 (449)
T TIGR01316 273 KSVVVIGGGNTAVDSARTALRLGAEVHCLYRRTRE-------DMTAR---------VEEIAHAEEEGVKFHFLCQPVEII 336 (449)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEeecCcc-------cCCCC---------HHHHHHHHhCCCEEEeccCcEEEE
Confidence 459999999999999999987 333322210 01100 11224466789999987 344442
Q ss_pred --C-CeE-EEEeC---------C---------CCeeEEEcCeEEEccCCCCC
Q psy14927 869 --P-NTV-TVIKS---------D---------GSTEEVKTKNILIATGSEVT 898 (1074)
Q Consensus 869 --~-~~~-~v~~~---------~---------G~~~~i~~d~lIIATG~~p~ 898 (1074)
. +.+ .|.+. + |+..++.+|.||+|+|..|.
T Consensus 337 ~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~D~Vi~AiG~~p~ 388 (449)
T TIGR01316 337 GDEEGNVRAVKFRKMDCQEQIDSGERRFLPCGDAECKLEADAVIVAIGNGSN 388 (449)
T ss_pred EcCCCeEEEEEEEEEEecCcCCCCCeeeeecCCceEEEECCEEEECCCCCCC
Confidence 1 222 12221 2 22347999999999999874
No 388
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=94.06 E-value=0.087 Score=63.35 Aligned_cols=98 Identities=12% Similarity=-0.090 Sum_probs=52.7
Q ss_pred hhhhhhccccchHHHHHHHhh------hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEee-eEEEe
Q psy14927 795 QVVLNTLGNCAAVQANYHLAT------KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNG-HGKIT 867 (1074)
Q Consensus 795 ~~VviiGgG~AGl~aA~~la~------~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g-~v~~i 867 (1074)
++|+|||||+.|+.+|..+.+ ++++......... .. .......... ...+.+.+.||+++++ .++.+
T Consensus 282 k~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~~~~~~~~-~~--~~~~~~~~~~---~~~~~~~~~GV~i~~~~~~~~i 355 (471)
T PRK12810 282 KHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIMPMPPSRR-NK--NNPWPYWPMK---LEVSNAHEEGVEREFNVQTKEF 355 (471)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCeEEEccccCCCcccc-cc--ccCCcccchH---HHHHHHHHcCCeEEeccCceEE
Confidence 349999999999999987766 1111111000000 00 0000000000 0234456779999998 45555
Q ss_pred cC--CeEE-EE-----eC-------CCCeeEEEcCeEEEccCCCCC
Q psy14927 868 GP--NTVT-VI-----KS-------DGSTEEVKTKNILIATGSEVT 898 (1074)
Q Consensus 868 d~--~~~~-v~-----~~-------~G~~~~i~~d~lIIATG~~p~ 898 (1074)
.. +.++ |. .. .|+..++.+|.||+|+|..|.
T Consensus 356 ~~~~g~v~~V~~~~~~~~~g~~~~~~g~~~~i~~D~VI~A~G~~p~ 401 (471)
T PRK12810 356 EGENGKVTGVKVVRTELGEGDFEPVEGSEFVLPADLVLLAMGFTGP 401 (471)
T ss_pred EccCCEEEEEEEEEEEecCCCccccCCceEEEECCEEEECcCcCCC
Confidence 42 2221 21 11 234468999999999998874
No 389
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=94.05 E-value=0.71 Score=47.22 Aligned_cols=89 Identities=18% Similarity=0.176 Sum_probs=60.3
Q ss_pred HHHHHHHhhcCCC---hHHHHHHHHHHHhccCHHHHHHHHHHhhC-----------hhhhhhHhhccCCHHHHHHHHHh-
Q psy14927 37 TDKLEKYIIQSKD---PVLLKWWAQYIESTEDMDLAMKYYEEARD-----------YLSMVRVLCFLQDFSRAAELANA- 101 (1074)
Q Consensus 37 ~~~~~~~~~~~~~---~~l~~~~a~~~e~~~~~~~A~~~y~~a~d-----------~~~~vr~l~~~~~~~~a~~i~~~- 101 (1074)
++....+.+...+ ...+..+|..+...|++++|..+|.++=. +..+..++..+|++++|.+..++
T Consensus 19 ~~~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 98 (172)
T PRK02603 19 ADLILKILPINKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQA 98 (172)
T ss_pred HHHHHHHcccccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444444443322 33567779999999999999999998742 33444557888999998887662
Q ss_pred ----cCChHHHHHHHHHHHhcCChHHHH
Q psy14927 102 ----SGDTAAAYHLARQYENSGQFDEAI 125 (1074)
Q Consensus 102 ----~~~~~~~~~la~~~~~~g~~~~Ai 125 (1074)
+.+..+...+|..|...|+...|.
T Consensus 99 l~~~p~~~~~~~~lg~~~~~~g~~~~a~ 126 (172)
T PRK02603 99 LELNPKQPSALNNIAVIYHKRGEKAEEA 126 (172)
T ss_pred HHhCcccHHHHHHHHHHHHHcCChHhHh
Confidence 345666667787777766654433
No 390
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=94.01 E-value=0.31 Score=60.24 Aligned_cols=61 Identities=11% Similarity=0.152 Sum_probs=39.0
Q ss_pred CHHHHHHHHHHHHhCC----CEEEeCceEEEEEec-CCe-EEEEEeeccCCCCceEEEcCEEEEccCC
Q psy14927 947 DGEVAKQFQRILGKQG----MQFKLGTKVTGASKS-GDN-ITVTIENVKDPTKKEELSCDALLVCVGR 1008 (1074)
Q Consensus 947 ~~~~~~~~~~~l~~~g----V~i~~~~~v~~i~~~-~~~-~~v~~~~~~~~g~~~~i~~D~vi~a~G~ 1008 (1074)
+..+...+.+.+++.+ |+++.++.+..+..+ ++. +.|...+.. +++...+.++.||+|||-
T Consensus 132 G~~i~~~L~~~~~~~~~~~~i~i~~~~~~~~Li~~~~g~v~Gv~~~~~~-~g~~~~i~AkaVILATGG 198 (589)
T PRK08641 132 GQQLLYALDEQVRRYEVAGLVTKYEGWEFLGAVLDDEGVCRGIVAQDLF-TMEIESFPADAVIMATGG 198 (589)
T ss_pred HHHHHHHHHHHHHhhhccCCcEEEeeEEEEEEEECCCCEEEEEEEEECC-CCcEEEEECCEEEECCCC
Confidence 3445555655555433 889999988887653 232 445554422 344457889999999984
No 391
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=93.88 E-value=3.3 Score=50.28 Aligned_cols=139 Identities=18% Similarity=0.101 Sum_probs=68.6
Q ss_pred hhccCCHHHHHHHHHh--cCChHHHHHHHHHHHhcCChHHHHHHHHHhCChHHHHHHHHHhCchHHHHHHhhhcCchhHH
Q psy14927 86 LCFLQDFSRAAELANA--SGDTAAAYHLARQYENSGQFDEAIHFYSVAGSCGNAVRLCKEQALDDQLWNLALSAGPSEQI 163 (1074)
Q Consensus 86 l~~~~~~~~a~~i~~~--~~~~~~~~~la~~~~~~g~~~~Ai~~y~~a~~~~~A~~la~~~~~~~~~~~l~~~~~~~~~~ 163 (1074)
.|...-++.+..+.|= ..-..-...-|.+....+...+|-.+|-.-|++.||+..-++.+||.+-++++.+..+.+..
T Consensus 901 i~~hdly~~~l~lyrYd~e~Qk~~~nifa~~l~~n~~~~~aa~aye~~gK~~Ea~gay~sA~mwrec~si~~q~~~~e~~ 980 (1243)
T COG5290 901 ICRHDLYDFLLLLYRYDGELQKFKINIFAGNLVDNLYHISAAKAYEVEGKYIEAHGAYDSALMWRECGSISTQEKGYEFN 980 (1243)
T ss_pred HHhccchHHHHHHHHhhhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhcchHHH
Confidence 4444455555555441 11111233444555555555666666666666666666666666666666666555554444
Q ss_pred HHHHHHccCChhHHHHHHHHhCChHHHHHHHHhhccCCcchHHHHHHHHHHhcCCChhhHHHhhhhcchHHHHH
Q psy14927 164 EAATYLETIEPDKAVLLYHKAGALHKALDLAFKLTLSNSGLVFQIKAMKCLLKSGDTNKIIFFAGVSRMKEIYV 237 (1074)
Q Consensus 164 ~~A~~~e~~~~~~A~~ly~kaG~~~kAl~l~~~~~~~~~~~~~~~~a~k~l~~~~~~~~~i~~a~~~r~~~l~~ 237 (1074)
..|+.+-+. +.-.+.|+|+-.+++..++.. .+|--||-| |......++..|-.+|..+++.
T Consensus 981 ~~AE~L~S~----l~ve~R~~~da~~i~l~yl~N-------~~eava~~c--kgs~y~ea~~~a~~s~~~e~~k 1041 (1243)
T COG5290 981 LCAELLPSD----LLVEFRKAGDAEKILLTYLEN-------LYEAVAMDC--KGSEYREAFCEAMVSRLVESEK 1041 (1243)
T ss_pred HHHHhhhhh----HHHHHHHhcCHHHHHHHHHhC-------HHHHHHHHc--ccccchHHHHHHHHhhhhhHHH
Confidence 555544332 333445555555555555542 123333333 2233344455555566656554
No 392
>KOG2404|consensus
Probab=93.79 E-value=0.23 Score=54.13 Aligned_cols=85 Identities=20% Similarity=0.255 Sum_probs=57.6
Q ss_pred hHHhhc-CCcEEEEecCCccCCCCCCHHHHHHHHHHHHhC------CCEEEeCceEEEEEecCCe-EEEEEeeccCCCCc
Q psy14927 923 SVWGRL-GAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQ------GMQFKLGTKVTGASKSGDN-ITVTIENVKDPTKK 994 (1074)
Q Consensus 923 ~~l~~~-G~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~------gV~i~~~~~v~~i~~~~~~-~~v~~~~~~~~g~~ 994 (1074)
..+.++ |+.|-=-+|+...++|.+ ++...+...+++. -+++..+++|+.|.++.+. ..|++.+. +|+.
T Consensus 115 d~la~lgGHSvpRTHr~s~plppgf--ei~~~L~~~l~k~as~~pe~~ki~~nskvv~il~n~gkVsgVeymd~--sgek 190 (477)
T KOG2404|consen 115 DLLAQLGGHSVPRTHRSSGPLPPGF--EIVKALSTRLKKKASENPELVKILLNSKVVDILRNNGKVSGVEYMDA--SGEK 190 (477)
T ss_pred HHHHHhcCCCCCcccccCCCCCCch--HHHHHHHHHHHHhhhcChHHHhhhhcceeeeeecCCCeEEEEEEEcC--CCCc
Confidence 334455 566655668877774443 3455555555442 4889999999999976555 45666664 4777
Q ss_pred eEEEcCEEEEccCCccc
Q psy14927 995 EELSCDALLVCVGRRPY 1011 (1074)
Q Consensus 995 ~~i~~D~vi~a~G~~p~ 1011 (1074)
..+.+|.|++|+|--..
T Consensus 191 ~~~~~~~VVlatGGf~y 207 (477)
T KOG2404|consen 191 SKIIGDAVVLATGGFGY 207 (477)
T ss_pred cceecCceEEecCCcCc
Confidence 88999999999985443
No 393
>KOG0029|consensus
Probab=93.77 E-value=0.023 Score=68.04 Aligned_cols=36 Identities=14% Similarity=0.163 Sum_probs=32.5
Q ss_pred chhhhhhccccchHHHHHHHhh-----hhhhhccccccccc
Q psy14927 794 RQVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLN 829 (1074)
Q Consensus 794 k~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~ 829 (1074)
+++|+|||||+|||+||++|.. +++|..++.||.+.
T Consensus 15 ~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGGRI~ 55 (501)
T KOG0029|consen 15 KKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGGRIY 55 (501)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCceeE
Confidence 5569999999999999999999 89999999999763
No 394
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=93.64 E-value=0.85 Score=54.56 Aligned_cols=64 Identities=20% Similarity=0.258 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHhCCCE--EEeCceEEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccC--CcccCC
Q psy14927 948 GEVAKQFQRILGKQGMQ--FKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVG--RRPYTH 1013 (1074)
Q Consensus 948 ~~~~~~~~~~l~~~gV~--i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G--~~p~~~ 1013 (1074)
.++.+++.+..+..|+. +.++++|..|+..+++..|++.+. ++...+..+|.||+|+| ..|+..
T Consensus 111 ~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~w~V~~~~~--~~~~~~~~~d~VIvAtG~~~~P~~P 178 (461)
T PLN02172 111 REVLAYLQDFAREFKIEEMVRFETEVVRVEPVDGKWRVQSKNS--GGFSKDEIFDAVVVCNGHYTEPNVA 178 (461)
T ss_pred HHHHHHHHHHHHHcCCcceEEecCEEEEEeecCCeEEEEEEcC--CCceEEEEcCEEEEeccCCCCCcCC
Confidence 56777888888888988 899999999998766667776541 12234678999999999 466644
No 395
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=93.60 E-value=0.083 Score=62.85 Aligned_cols=60 Identities=17% Similarity=0.214 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccCCc
Q psy14927 949 EVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRR 1009 (1074)
Q Consensus 949 ~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~ 1009 (1074)
.+.-.......++|-+++..++|+.+..+++...|++.|.. +|+..++.++.||.|+|.-
T Consensus 165 RLv~~~a~~A~~~Ga~il~~~~v~~~~re~~v~gV~~~D~~-tg~~~~ira~~VVNAaGpW 224 (532)
T COG0578 165 RLVAANARDAAEHGAEILTYTRVESLRREGGVWGVEVEDRE-TGETYEIRARAVVNAAGPW 224 (532)
T ss_pred HHHHHHHHHHHhcccchhhcceeeeeeecCCEEEEEEEecC-CCcEEEEEcCEEEECCCcc
Confidence 34444455667889999999999999988775678887765 7888899999999999953
No 396
>KOG2820|consensus
Probab=93.53 E-value=0.13 Score=56.69 Aligned_cols=48 Identities=23% Similarity=0.290 Sum_probs=37.5
Q ss_pred HHHHhhhCCeEEEeee-EEEec-----CCeEEEEeCCCCeeEEEcCeEEEccCCCC
Q psy14927 848 IAHLFKSNKVTQLNGH-GKITG-----PNTVTVIKSDGSTEEVKTKNILIATGSEV 897 (1074)
Q Consensus 848 ~~~~l~~~gV~~~~g~-v~~id-----~~~~~v~~~~G~~~~i~~d~lIIATG~~p 897 (1074)
++..++..|+.|+.|+ |+.+. ...+.|.+.+| ..+.++.+|+++|++-
T Consensus 159 ~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~g--s~Y~akkiI~t~GaWi 212 (399)
T KOG2820|consen 159 LQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDG--SIYHAKKIIFTVGAWI 212 (399)
T ss_pred HHHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccC--CeeecceEEEEecHHH
Confidence 6677788899999994 55443 24567778888 5699999999999974
No 397
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=93.47 E-value=0.15 Score=42.66 Aligned_cols=53 Identities=28% Similarity=0.414 Sum_probs=43.8
Q ss_pred HhhhcCCHHHHHHHHHHcCcccchhhhHhhhcHHHHHHHhhcCCChHHHHHHHHHHHhccCHHHHHHHHHHhh
Q psy14927 5 ETMKNGDIDRAIRMFEKAETHQQHVPRMLLENTDKLEKYIIQSKDPVLLKWWAQYIESTEDMDLAMKYYEEAR 77 (1074)
Q Consensus 5 ~~~~~g~~~eA~~~Ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~ 77 (1074)
.+.+.|++++|+..|++.-... ++++..|.++|..+...|++++|+.+|.++-
T Consensus 6 ~~~~~g~~~~A~~~~~~~l~~~--------------------P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~ 58 (65)
T PF13432_consen 6 ALYQQGDYDEAIAAFEQALKQD--------------------PDNPEAWYLLGRILYQQGRYDEALAYYERAL 58 (65)
T ss_dssp HHHHCTHHHHHHHHHHHHHCCS--------------------TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC--------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4677889999999998877444 3458899999999999999999999998863
No 398
>PRK12831 putative oxidoreductase; Provisional
Probab=93.42 E-value=0.14 Score=61.49 Aligned_cols=88 Identities=15% Similarity=0.081 Sum_probs=51.6
Q ss_pred hhhhhhccccchHHHHHHHhh-----hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEeee-EEEec
Q psy14927 795 QVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGH-GKITG 868 (1074)
Q Consensus 795 ~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~-v~~id 868 (1074)
++|+|||||..|+.+|..+.+ +++..... ..++... .+ .+.+...||+|+++. ++.+.
T Consensus 282 k~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~~-------~~m~a~~----~e-----~~~a~~eGV~i~~~~~~~~i~ 345 (464)
T PRK12831 282 KKVAVVGGGNVAMDAARTALRLGAEVHIVYRRSE-------EELPARV----EE-----VHHAKEEGVIFDLLTNPVEIL 345 (464)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCEEEEEeecCc-------ccCCCCH----HH-----HHHHHHcCCEEEecccceEEE
Confidence 459999999999999999988 23322111 0111111 11 123456799999873 33332
Q ss_pred --CC-eEE-EEe---------C---------CCCeeEEEcCeEEEccCCCCC
Q psy14927 869 --PN-TVT-VIK---------S---------DGSTEEVKTKNILIATGSEVT 898 (1074)
Q Consensus 869 --~~-~~~-v~~---------~---------~G~~~~i~~d~lIIATG~~p~ 898 (1074)
.+ .++ |.+ . +|+..++.+|.||+|+|..|.
T Consensus 346 ~~~~g~v~~v~~~~~~~~~~d~~Gr~~~~~~~g~~~~i~~D~Vi~AiG~~p~ 397 (464)
T PRK12831 346 GDENGWVKGMKCIKMELGEPDASGRRRPVEIEGSEFVLEVDTVIMSLGTSPN 397 (464)
T ss_pred ecCCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECCCCCCC
Confidence 11 111 111 0 233347999999999999874
No 399
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=93.38 E-value=0.29 Score=60.40 Aligned_cols=61 Identities=8% Similarity=-0.026 Sum_probs=42.8
Q ss_pred CHHHHHHHHHHHHhCCCEEEeCceEEEEEec-CCe-EEEEEeeccCCCCceEEEcCEEEEccCC
Q psy14927 947 DGEVAKQFQRILGKQGMQFKLGTKVTGASKS-GDN-ITVTIENVKDPTKKEELSCDALLVCVGR 1008 (1074)
Q Consensus 947 ~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~-~~~-~~v~~~~~~~~g~~~~i~~D~vi~a~G~ 1008 (1074)
...+...+.+...+.||+++.++.+.++..+ ++. +.+...+.. +|+...+.+..||+|||-
T Consensus 142 G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~-~g~~~~i~AkaVILATGG 204 (588)
T PRK08958 142 GHALLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTAICIE-TGEVVYFKARATVLATGG 204 (588)
T ss_pred HHHHHHHHHHHhhhcCCEEEeCcEEEEEEECCCCEEEEEEEEEcC-CCcEEEEEcCeEEECCCC
Confidence 3556666767777889999999999998753 333 444443322 355667899999999874
No 400
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=93.38 E-value=0.38 Score=42.62 Aligned_cols=69 Identities=26% Similarity=0.368 Sum_probs=47.8
Q ss_pred hhcHHHHHHHHHHh-----hCHHH-----HHHHHHHcCCHHHHHHHHHh----cCCcHHHHHHHHHHHhcCCHHHHHHHH
Q psy14927 637 TEDMDLAMKYYEEA-----RDYLS-----MVRVLCFLQDFSRAAELANA----SGDTAAAYHLARQYENSGQFDEAIHFY 702 (1074)
Q Consensus 637 ~~~~~~A~~~y~~a-----g~~~~-----ai~~~~~~~~~~~a~~v~~~----~~~~~~~~~~A~~~~~~g~~~~A~~~~ 702 (1074)
+|+|+.|+.+|.+. .+++. -..||...++|++|+++++. .........+|+-|.+.|+|++|++.|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLKLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 56788888877765 12222 25668999999999999843 222344447799999999999999998
Q ss_pred HHc
Q psy14927 703 SVA 705 (1074)
Q Consensus 703 ~ka 705 (1074)
-++
T Consensus 82 ~~~ 84 (84)
T PF12895_consen 82 EKA 84 (84)
T ss_dssp HHH
T ss_pred hcC
Confidence 764
No 401
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=93.36 E-value=2.1 Score=49.10 Aligned_cols=51 Identities=14% Similarity=0.122 Sum_probs=24.9
Q ss_pred hHHHHHHHHHHHhccCHHHHHHHHHHhhChh------------hhhhHhhccCCHHHHHHHHH
Q psy14927 50 PVLLKWWAQYIESTEDMDLAMKYYEEARDYL------------SMVRVLCFLQDFSRAAELAN 100 (1074)
Q Consensus 50 ~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~~------------~~vr~l~~~~~~~~a~~i~~ 100 (1074)
+..+..+|..+...|++++|..+|.++-+.. .+.+++...|++++|.++.+
T Consensus 148 ~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~ 210 (355)
T cd05804 148 AWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYD 210 (355)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 4444555555555555555555555432210 23344455555555555544
No 402
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=93.36 E-value=0.85 Score=45.18 Aligned_cols=83 Identities=10% Similarity=0.061 Sum_probs=59.0
Q ss_pred hHHHHHHHHHHHHhhhcHHHHHHHHHHh-----hCH---HHHHHHHHHcCCHHHHHHHHH-----hcCCcHHHHHHHHHH
Q psy14927 623 YRVLLKWWAQYIESTEDMDLAMKYYEEA-----RDY---LSMVRVLCFLQDFSRAAELAN-----ASGDTAAAYHLARQY 689 (1074)
Q Consensus 623 ~~~l~~~~a~~~e~~~~~~~A~~~y~~a-----g~~---~~ai~~~~~~~~~~~a~~v~~-----~~~~~~~~~~~A~~~ 689 (1074)
+|..+...|..+...|+|++|..+|.++ .++ -..-.++...+++++|....+ ..+.......+|..+
T Consensus 23 ~p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l 102 (144)
T PRK15359 23 DPETVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCL 102 (144)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 4555667788888899999999999876 222 223334677788888886663 334455555888888
Q ss_pred HhcCCHHHHHHHHHHc
Q psy14927 690 ENSGQFDEAIHFYSVA 705 (1074)
Q Consensus 690 ~~~g~~~~A~~~~~ka 705 (1074)
...|++++|+..|.++
T Consensus 103 ~~~g~~~eAi~~~~~A 118 (144)
T PRK15359 103 KMMGEPGLAREAFQTA 118 (144)
T ss_pred HHcCCHHHHHHHHHHH
Confidence 8888888888888655
No 403
>KOG2114|consensus
Probab=93.35 E-value=2.2 Score=52.30 Aligned_cols=120 Identities=17% Similarity=0.145 Sum_probs=66.9
Q ss_pred cHHHHHHHhhcCCC-----hHHHHHHHHHHHhccCHHHHHHHHHHhhChhhhhhHhhccCCHHHHHHHHH--h---cCCh
Q psy14927 36 NTDKLEKYIIQSKD-----PVLLKWWAQYIESTEDMDLAMKYYEEARDYLSMVRVLCFLQDFSRAAELAN--A---SGDT 105 (1074)
Q Consensus 36 ~~~~~~~~~~~~~~-----~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~~~~vr~l~~~~~~~~a~~i~~--~---~~~~ 105 (1074)
.+..+-++..+... .++++.||.++..+|++++|...|.++=++..--.+..+-=+.++-.++.+ + .++.
T Consensus 349 ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~Vi~kfLdaq~IknLt~YLe~L~~~gl 428 (933)
T KOG2114|consen 349 LYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSEVIKKFLDAQRIKNLTSYLEALHKKGL 428 (933)
T ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHHHHHHhcCHHHHHHHHHHHHHHHHccc
Confidence 34444455444322 459999999999999999999999998777555544333223333333322 1 1111
Q ss_pred HH---HHHHHHHHHhcCChHHHHHHHHHhC------ChHHHHHHHHHhCchHHHHHHhh
Q psy14927 106 AA---AYHLARQYENSGQFDEAIHFYSVAG------SCGNAVRLCKEQALDDQLWNLAL 155 (1074)
Q Consensus 106 ~~---~~~la~~~~~~g~~~~Ai~~y~~a~------~~~~A~~la~~~~~~~~~~~l~~ 155 (1074)
+. -..|-..|.+.+|.+.--+|-.+.- ..+.||++|++.|..++..-||.
T Consensus 429 a~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~ 487 (933)
T KOG2114|consen 429 ANSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLAT 487 (933)
T ss_pred ccchhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHH
Confidence 11 1233355566666555555444333 35555665555555555554443
No 404
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=93.34 E-value=2.1 Score=53.10 Aligned_cols=141 Identities=19% Similarity=0.160 Sum_probs=76.5
Q ss_pred HHHHHHhccCHHHHHHHHHH-hhChhhhhhH---hhccCCHHHHHHH-----HHhcCCh---HHHHHHHHHHH--hcCCh
Q psy14927 56 WAQYIESTEDMDLAMKYYEE-ARDYLSMVRV---LCFLQDFSRAAEL-----ANASGDT---AAAYHLARQYE--NSGQF 121 (1074)
Q Consensus 56 ~a~~~e~~~~~~~A~~~y~~-a~d~~~~vr~---l~~~~~~~~a~~i-----~~~~~~~---~~~~~la~~~~--~~g~~ 121 (1074)
|.+.+.=.|+|+.|.++-.+ ......+|.+ |...|-+.-.... ..++++. .-+..+.+|.. +..|.
T Consensus 264 Yf~~LlLtgqFE~AI~~L~~~~~~~~dAVH~AIaL~~~gLL~~~~~~~~~lls~~~~~~~~ln~arLI~~Y~~~F~~td~ 343 (613)
T PF04097_consen 264 YFQVLLLTGQFEAAIEFLYRNEFNRVDAVHFAIALAYYGLLRVSDSSSAPLLSVDPGDPPPLNFARLIGQYTRSFEITDP 343 (613)
T ss_dssp HHHHHHHTT-HHHHHHHHHT--T-HHHHHHHHHHHHHTT------------------------HHHHHHHHHHTTTTT-H
T ss_pred HHHHHHHHhhHHHHHHHHHhhccCcccHHHHHHHHHHcCCCCCCCccccceeeecCCCCCCcCHHHHHHHHHHHHhccCH
Confidence 34666668999999988777 5555667777 5555554333331 1122222 23455555544 56788
Q ss_pred HHHHHHHHHhCChHH--HHH--------HHHHhCchHHHHH------------------HhhhcC-c----hhHHHHHHH
Q psy14927 122 DEAIHFYSVAGSCGN--AVR--------LCKEQALDDQLWN------------------LALSAG-P----SEQIEAATY 168 (1074)
Q Consensus 122 ~~Ai~~y~~a~~~~~--A~~--------la~~~~~~~~~~~------------------l~~~~~-~----~~~~~~A~~ 168 (1074)
.+|++||.....+.. -.+ |+-+-..++.++. |..-.. + +....+|.-
T Consensus 344 ~~Al~Y~~li~~~~~~~~~~l~~~~l~eLvletref~~LLG~i~~dG~r~~G~i~~~~~Li~~~~~~~~~~~i~~~~A~~ 423 (613)
T PF04097_consen 344 REALQYLYLICLFKDPEQRNLFHECLRELVLETREFDLLLGDINPDGSRTPGLIERRLSLIKFDDDEDFLREIIEQAARE 423 (613)
T ss_dssp HHHHHHHHGGGGS-SCCHHHHHHHHHHHHHHHH--HHHHHEEE-TTS-EEE-HHHHTGGGGT-SSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHHHHHHccCCHHHHCCCCCCCCccccceeeccccccCCCCcHHHHHHHHHHHHHH
Confidence 999999998877653 112 2222222232321 110111 1 334458888
Q ss_pred Hcc-CChhHHHHHHHHhCChHHHHHHHHh
Q psy14927 169 LET-IEPDKAVLLYHKAGALHKALDLAFK 196 (1074)
Q Consensus 169 ~e~-~~~~~A~~ly~kaG~~~kAl~l~~~ 196 (1074)
.|+ |.++.|+.||+.||++.++++++-+
T Consensus 424 ~e~~g~~~dAi~Ly~La~~~d~vl~lln~ 452 (613)
T PF04097_consen 424 AEERGRFEDAILLYHLAEEYDKVLSLLNR 452 (613)
T ss_dssp HHHCT-HHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHhhHHHHHHHHHH
Confidence 888 6799999999999999999999877
No 405
>KOG0548|consensus
Probab=93.34 E-value=2.1 Score=50.13 Aligned_cols=77 Identities=19% Similarity=0.295 Sum_probs=48.0
Q ss_pred HHHHHHHhccCHHHHHHHHHHhhChh-------hhhhHhhccCCHHHHHHHHHhc---C--ChHHHHH-------HHHHH
Q psy14927 55 WWAQYIESTEDMDLAMKYYEEARDYL-------SMVRVLCFLQDFSRAAELANAS---G--DTAAAYH-------LARQY 115 (1074)
Q Consensus 55 ~~a~~~e~~~~~~~A~~~y~~a~d~~-------~~vr~l~~~~~~~~a~~i~~~~---~--~~~~~~~-------la~~~ 115 (1074)
..|.......++..|+++|..+=+.+ +..-++...|.+.+....+... + .++-.+. +|.-|
T Consensus 229 ~lgnaaykkk~f~~a~q~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~ 308 (539)
T KOG0548|consen 229 ELGNAAYKKKDFETAIQHYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAY 308 (539)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhh
Confidence 45778888999999999998864443 3333355555554444443321 1 1122222 33466
Q ss_pred HhcCChHHHHHHHHHh
Q psy14927 116 ENSGQFDEAIHFYSVA 131 (1074)
Q Consensus 116 ~~~g~~~~Ai~~y~~a 131 (1074)
.+.|+++-||++|.++
T Consensus 309 ~k~~~~~~ai~~~~ka 324 (539)
T KOG0548|consen 309 TKREDYEGAIKYYQKA 324 (539)
T ss_pred hhHHhHHHHHHHHHHH
Confidence 6788999999999983
No 406
>PRK14574 hmsH outer membrane protein; Provisional
Probab=93.27 E-value=29 Score=44.59 Aligned_cols=139 Identities=12% Similarity=0.069 Sum_probs=91.1
Q ss_pred hhcCCHHHHHHHHHHcCcccchhh-------hHh--hhcHHHHHHHhhcC-----CChHHHHHHHHHHHhccCHHHHHHH
Q psy14927 7 MKNGDIDRAIRMFEKAETHQQHVP-------RML--LENTDKLEKYIIQS-----KDPVLLKWWAQYIESTEDMDLAMKY 72 (1074)
Q Consensus 7 ~~~g~~~eA~~~Ye~~~~~~~~~~-------~~~--~~~~~~~~~~~~~~-----~~~~l~~~~a~~~e~~~~~~~A~~~ 72 (1074)
-++|++++|...|+++...+..-+ .++ .+++.++..+..+. .+.......|+.+...|+|+.|++.
T Consensus 45 ~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiel 124 (822)
T PRK14574 45 ARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALAL 124 (822)
T ss_pred HhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 467999999999999997776642 222 25677777776663 3344666668899999999999999
Q ss_pred HHHhhCh--------hhhhhHhhccCCHHHHHHHHHh--cCChHHH--HHHHHHHHhcCChHHHHHHHHH----------
Q psy14927 73 YEEARDY--------LSMVRVLCFLQDFSRAAELANA--SGDTAAA--YHLARQYENSGQFDEAIHFYSV---------- 130 (1074)
Q Consensus 73 y~~a~d~--------~~~vr~l~~~~~~~~a~~i~~~--~~~~~~~--~~la~~~~~~g~~~~Ai~~y~~---------- 130 (1074)
|.++=.. ..++.++...++.++|.+.++. ..+.... ..++..+...++..+|++.|.+
T Consensus 125 y~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~n~e 204 (822)
T PRK14574 125 WQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPTSEE 204 (822)
T ss_pred HHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCCCHH
Confidence 9985322 2344557788999999988873 2233222 3333344334444445555544
Q ss_pred -----------hCChHHHHHHHHHhC
Q psy14927 131 -----------AGSCGNAVRLCKEQA 145 (1074)
Q Consensus 131 -----------a~~~~~A~~la~~~~ 145 (1074)
.|...-|.+++++|-
T Consensus 205 ~~~~~~~~l~~~~~~~~a~~l~~~~p 230 (822)
T PRK14574 205 VLKNHLEILQRNRIVEPALRLAKENP 230 (822)
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHhCc
Confidence 556666777777664
No 407
>PRK12839 hypothetical protein; Provisional
Probab=93.26 E-value=0.68 Score=57.01 Aligned_cols=60 Identities=10% Similarity=0.181 Sum_probs=40.5
Q ss_pred CHHHHHHHHHHHHhCCCEEEeCceEEEEEec-CC-eEEEEEeeccCCCCceEEEcCEEEEccCC
Q psy14927 947 DGEVAKQFQRILGKQGMQFKLGTKVTGASKS-GD-NITVTIENVKDPTKKEELSCDALLVCVGR 1008 (1074)
Q Consensus 947 ~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~-~~-~~~v~~~~~~~~g~~~~i~~D~vi~a~G~ 1008 (1074)
+..+...+.+...+.||+++.++.++++..+ ++ .+.|.+.+. +++...+.++.||+|+|-
T Consensus 213 g~~l~~~L~~~a~~~Gv~i~~~t~v~~Li~~~~g~V~GV~~~~~--~g~~~i~aak~VVLAtGG 274 (572)
T PRK12839 213 GTALTGRLLRSADDLGVDLRVSTSATSLTTDKNGRVTGVRVQGP--DGAVTVEATRGVVLATGG 274 (572)
T ss_pred HHHHHHHHHHHHHHCCCEEEcCCEEEEEEECCCCcEEEEEEEeC--CCcEEEEeCCEEEEcCCC
Confidence 4455666777788899999999999998643 23 345555441 233334455899999974
No 408
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=93.24 E-value=0.26 Score=56.87 Aligned_cols=45 Identities=24% Similarity=0.358 Sum_probs=35.5
Q ss_pred HHhCCCEEEeCceEEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccCC
Q psy14927 958 LGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGR 1008 (1074)
Q Consensus 958 l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~ 1008 (1074)
.++.|=.|..+..|.+|..++++|+|+..+ ..+..+|.+|+++..
T Consensus 216 a~ql~~~I~~~~~V~rI~q~~~gV~Vt~~~------~~~~~ad~~i~tiPl 260 (450)
T COG1231 216 AKQLGTRILLNEPVRRIDQDGDGVTVTADD------VGQYVADYVLVTIPL 260 (450)
T ss_pred HHHhhceEEecCceeeEEEcCCeEEEEeCC------cceEEecEEEEecCH
Confidence 344566788889999999988888887654 357999999998753
No 409
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=93.23 E-value=1.2 Score=53.74 Aligned_cols=163 Identities=18% Similarity=0.259 Sum_probs=102.9
Q ss_pred CHHHHHHHHHHcCcccchhhhHhh------hcH-------HHHHHHhhc--------------CCCh--HHHHHH--HHH
Q psy14927 11 DIDRAIRMFEKAETHQQHVPRMLL------ENT-------DKLEKYIIQ--------------SKDP--VLLKWW--AQY 59 (1074)
Q Consensus 11 ~~~eA~~~Ye~~~~~~~~~~~~~~------~~~-------~~~~~~~~~--------------~~~~--~l~~~~--a~~ 59 (1074)
.|.+.+..|-...- ..-||.+|. .+. ..+..|+.+ .++| -||.++ |+.
T Consensus 125 ~F~~~~~~yl~~~l-~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqh 203 (517)
T PF12569_consen 125 EFKERLDEYLRPQL-RKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQH 203 (517)
T ss_pred HHHHHHHHHHHHHH-hcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHH
Confidence 46667777776663 336777763 222 234444433 1123 367777 999
Q ss_pred HHhccCHHHHHHHHHHhhCh--------hhhhhHhhccCCHHHHHHHHHh-----cCChHHHHHHHHHHHhcCChHHHHH
Q psy14927 60 IESTEDMDLAMKYYEEARDY--------LSMVRVLCFLQDFSRAAELANA-----SGDTAAAYHLARQYENSGQFDEAIH 126 (1074)
Q Consensus 60 ~e~~~~~~~A~~~y~~a~d~--------~~~vr~l~~~~~~~~a~~i~~~-----~~~~~~~~~la~~~~~~g~~~~Ai~ 126 (1074)
+...|++++|+++..+|=+. .-..|||-+.|++.+|.+.... +.|+-.....++++.+.|++++|.+
T Consensus 204 yd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~ 283 (517)
T PF12569_consen 204 YDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEK 283 (517)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHH
Confidence 99999999999999986543 5567888899999999887664 4455566666677666666666654
Q ss_pred HHHHhCChHHHHHHHHHhCchHHHHHHhhhcCchhHHHHHHHHccCChhHHHHHHHHhCChHHHHHHHHhh
Q psy14927 127 FYSVAGSCGNAVRLCKEQALDDQLWNLALSAGPSEQIEAATYLETIEPDKAVLLYHKAGALHKALDLAFKL 197 (1074)
Q Consensus 127 ~y~~a~~~~~A~~la~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~~~~~~A~~ly~kaG~~~kAl~l~~~~ 197 (1074)
....--+-+. +........=.-||+ .+.++.|.+.|++..||+.+...
T Consensus 284 ~~~~Ftr~~~-------------------~~~~~L~~mQc~Wf~----~e~a~a~~r~~~~~~ALk~~~~v 331 (517)
T PF12569_consen 284 TASLFTREDV-------------------DPLSNLNDMQCMWFE----TECAEAYLRQGDYGLALKRFHAV 331 (517)
T ss_pred HHHhhcCCCC-------------------CcccCHHHHHHHHHH----HHHHHHHHHHhhHHHHHHHHHHH
Confidence 3222111110 000111112234554 45688999999999999998764
No 410
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=93.21 E-value=0.62 Score=57.23 Aligned_cols=60 Identities=8% Similarity=0.160 Sum_probs=42.8
Q ss_pred CCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCe-EEEEEeeccCCCCceEEEc-CEEEEccCC
Q psy14927 946 IDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDN-ITVTIENVKDPTKKEELSC-DALLVCVGR 1008 (1074)
Q Consensus 946 ~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~-~~v~~~~~~~~g~~~~i~~-D~vi~a~G~ 1008 (1074)
....+...+.+.+++.||++++++.++++..+++. +.|...+ +++...+.+ ..||+|+|-
T Consensus 215 ~G~~l~~~L~~~~~~~Gv~i~~~t~v~~Li~~~g~V~GV~~~~---~g~~~~i~a~kaVILAtGG 276 (564)
T PRK12845 215 GGQALAAGLFAGVLRAGIPIWTETSLVRLTDDGGRVTGAVVDH---RGREVTVTARRGVVLAAGG 276 (564)
T ss_pred ChHHHHHHHHHHHHHCCCEEEecCEeeEEEecCCEEEEEEEEE---CCcEEEEEcCCEEEEecCC
Confidence 34677778888888999999999999998754333 3444443 244455666 589999974
No 411
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=93.13 E-value=0.49 Score=57.65 Aligned_cols=85 Identities=14% Similarity=0.176 Sum_probs=62.9
Q ss_pred hhHHhhcCCcEEEEecC--CccC-----------CCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEEeec
Q psy14927 922 GSVWGRLGAEVTAIEFM--NAIG-----------GMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENV 988 (1074)
Q Consensus 922 A~~l~~~G~~Vtlv~~~--~~~~-----------~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~ 988 (1074)
|..+++.|.+|++++.. ..+. .....+++.+.+.+.+++.||+++.+++|..+..+++...+++.+
T Consensus 228 A~~la~~G~~v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~gv~i~~~~~V~~I~~~~~~~~v~~~~- 306 (515)
T TIGR03140 228 AIYAARKGLRTAMVAERIGGQVKDTVGIENLISVPYTTGSQLAANLEEHIKQYPIDLMENQRAKKIETEDGLIVVTLES- 306 (515)
T ss_pred HHHHHHCCCcEEEEecCCCCccccCcCcccccccCCCCHHHHHHHHHHHHHHhCCeEEcCCEEEEEEecCCeEEEEECC-
Confidence 77788899999998631 1111 012346677788888899999999999999998765555565543
Q ss_pred cCCCCceEEEcCEEEEccCCcccC
Q psy14927 989 KDPTKKEELSCDALLVCVGRRPYT 1012 (1074)
Q Consensus 989 ~~~g~~~~i~~D~vi~a~G~~p~~ 1012 (1074)
+..+.+|.+|+|+|..|..
T Consensus 307 -----g~~i~~d~lIlAtGa~~~~ 325 (515)
T TIGR03140 307 -----GEVLKAKSVIVATGARWRK 325 (515)
T ss_pred -----CCEEEeCEEEECCCCCcCC
Confidence 3479999999999998754
No 412
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=93.09 E-value=0.86 Score=46.34 Aligned_cols=60 Identities=20% Similarity=0.134 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHhhChhhhhhHhhccCCHHHHHHHHHhcCChHHHHHHHH-------HHHhcCChHH
Q psy14927 51 VLLKWWAQYIESTEDMDLAMKYYEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAAYHLAR-------QYENSGQFDE 123 (1074)
Q Consensus 51 ~l~~~~a~~~e~~~~~~~A~~~y~~a~d~~~~vr~l~~~~~~~~a~~i~~~~~~~~~~~~la~-------~~~~~g~~~~ 123 (1074)
..|..+|..+...|++++|.++|.++=.. .+........+|. .+...|+++.
T Consensus 73 ~~~~~lg~~~~~~g~~~eA~~~~~~Al~~---------------------~~~~~~~~~~la~i~~~~~~~~~~~g~~~~ 131 (168)
T CHL00033 73 YILYNIGLIHTSNGEHTKALEYYFQALER---------------------NPFLPQALNNMAVICHYRGEQAIEQGDSEI 131 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------------------CcCcHHHHHHHHHHHHHhhHHHHHcccHHH
Confidence 35666677777777777777776554422 1112233344444 4447778777
Q ss_pred HHHHHHHh
Q psy14927 124 AIHFYSVA 131 (1074)
Q Consensus 124 Ai~~y~~a 131 (1074)
|+..|.++
T Consensus 132 A~~~~~~a 139 (168)
T CHL00033 132 AEAWFDQA 139 (168)
T ss_pred HHHHHHHH
Confidence 77765544
No 413
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.08 E-value=0.94 Score=44.48 Aligned_cols=113 Identities=10% Similarity=0.109 Sum_probs=78.0
Q ss_pred HhhhcCCHHHHHHHHHHcCcccch---h----hhHhhh-cHHHHHHHhhcCCChHHHHHHHHHHHhccCHHHHHHHHHHh
Q psy14927 5 ETMKNGDIDRAIRMFEKAETHQQH---V----PRMLLE-NTDKLEKYIIQSKDPVLLKWWAQYIESTEDMDLAMKYYEEA 76 (1074)
Q Consensus 5 ~~~~~g~~~eA~~~Ye~~~~~~~~---~----~~~~~~-~~~~~~~~~~~~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a 76 (1074)
.+++.+...+.+.+-+..-..+.. + ..+|.+ +..++-+++.+.++.==...-++.++..+-|++|.-.|.+.
T Consensus 16 ~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~~~~ll~~l~~~~~~yd~~~~~~~c~~~~l~~~~~~l~~k~ 95 (140)
T smart00299 16 LFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYDPQKEIERLDNKSNHYDIEKVGKLCEKAKLYEEAVELYKKD 95 (140)
T ss_pred HHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHCHHHHHHHHHhccccCCHHHHHHHHHHcCcHHHHHHHHHhh
Confidence 456667778888777765433211 1 222222 45566666663222112233577888899999999999999
Q ss_pred hChhhhhhH-hhccCCHHHHHHHHHhcCChHHHHHHHHHHHh
Q psy14927 77 RDYLSMVRV-LCFLQDFSRAAELANASGDTAAAYHLARQYEN 117 (1074)
Q Consensus 77 ~d~~~~vr~-l~~~~~~~~a~~i~~~~~~~~~~~~la~~~~~ 117 (1074)
|++..++++ +.++++++.|.+.+++.++++....+++++..
T Consensus 96 ~~~~~Al~~~l~~~~d~~~a~~~~~~~~~~~lw~~~~~~~l~ 137 (140)
T smart00299 96 GNFKDAIVTLIEHLGNYEKAIEYFVKQNNPELWAEVLKALLD 137 (140)
T ss_pred cCHHHHHHHHHHcccCHHHHHHHHHhCCCHHHHHHHHHHHHc
Confidence 999999999 55559999999999988888888888877653
No 414
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=93.08 E-value=0.4 Score=59.32 Aligned_cols=38 Identities=29% Similarity=0.393 Sum_probs=29.9
Q ss_pred EEeCceEEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccCC
Q psy14927 965 FKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGR 1008 (1074)
Q Consensus 965 i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~ 1008 (1074)
++.+++|+.++.+++.+.+++.+ +.++.+|.||.|-|.
T Consensus 209 i~~g~~V~~I~~~~d~VtV~~~d------G~ti~aDlVVGADG~ 246 (668)
T PLN02927 209 IRNESNVVDFEDSGDKVTVVLEN------GQRYEGDLLVGADGI 246 (668)
T ss_pred EEcCCEEEEEEEeCCEEEEEECC------CCEEEcCEEEECCCC
Confidence 56788899998877777777655 357899999999885
No 415
>KOG1130|consensus
Probab=93.05 E-value=8.2 Score=43.74 Aligned_cols=19 Identities=32% Similarity=0.478 Sum_probs=13.5
Q ss_pred HHhhhcCCHHHHHHHHHHc
Q psy14927 4 EETMKNGDIDRAIRMFEKA 22 (1074)
Q Consensus 4 ~~~~~~g~~~eA~~~Ye~~ 22 (1074)
|.|-.+|++..-+..|+.+
T Consensus 25 ERLck~gdcraGv~ff~aA 43 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAA 43 (639)
T ss_pred HHHHhccchhhhHHHHHHH
Confidence 5566777777777777754
No 416
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=93.04 E-value=0.52 Score=57.43 Aligned_cols=85 Identities=11% Similarity=0.076 Sum_probs=63.7
Q ss_pred hhHHhhcCCcEEEEecC--CccC-----------CCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEEeec
Q psy14927 922 GSVWGRLGAEVTAIEFM--NAIG-----------GMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENV 988 (1074)
Q Consensus 922 A~~l~~~G~~Vtlv~~~--~~~~-----------~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~ 988 (1074)
|..+++.|.+|+++... .... ....++++.+.+.+.+++.||+++.++++..+...++...|.+.+
T Consensus 227 A~~la~~G~~v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~V~~I~~~~~~~~V~~~~- 305 (517)
T PRK15317 227 AIYAARKGIRTGIVAERFGGQVLDTMGIENFISVPETEGPKLAAALEEHVKEYDVDIMNLQRASKLEPAAGLIEVELAN- 305 (517)
T ss_pred HHHHHHCCCcEEEEecCCCCeeeccCcccccCCCCCCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCeEEEEECC-
Confidence 77888899999998653 1110 012346777888889999999999999999998865555665543
Q ss_pred cCCCCceEEEcCEEEEccCCcccC
Q psy14927 989 KDPTKKEELSCDALLVCVGRRPYT 1012 (1074)
Q Consensus 989 ~~~g~~~~i~~D~vi~a~G~~p~~ 1012 (1074)
+.++.+|.||+|+|..|..
T Consensus 306 -----g~~i~a~~vViAtG~~~r~ 324 (517)
T PRK15317 306 -----GAVLKAKTVILATGARWRN 324 (517)
T ss_pred -----CCEEEcCEEEECCCCCcCC
Confidence 3479999999999998754
No 417
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=93.00 E-value=0.52 Score=40.92 Aligned_cols=85 Identities=26% Similarity=0.327 Sum_probs=55.6
Q ss_pred hhcCCHHHHHHHHHHcCcccchhhhHhhhcHHHHHHHhhcCCChHHHHHHHHHHHhccCHHHHHHHHHHhhChhhhhhHh
Q psy14927 7 MKNGDIDRAIRMFEKAETHQQHVPRMLLENTDKLEKYIIQSKDPVLLKWWAQYIESTEDMDLAMKYYEEARDYLSMVRVL 86 (1074)
Q Consensus 7 ~~~g~~~eA~~~Ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~~~~vr~l 86 (1074)
..+|++++|+..++++-... ++++..+..+|..+...++++.|.++|..+-+.
T Consensus 11 ~~~~~~~~A~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~------- 63 (100)
T cd00189 11 YKLGDYDEALEYYEKALELD--------------------PDNADAYYNLAAAYYKLGKYEEALEDYEKALEL------- 63 (100)
T ss_pred HHHhcHHHHHHHHHHHHhcC--------------------CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------
Confidence 34566666666666554222 123456677777777777788777777665432
Q ss_pred hccCCHHHHHHHHHhcCChHHHHHHHHHHHhcCChHHHHHHHHHhC
Q psy14927 87 CFLQDFSRAAELANASGDTAAAYHLARQYENSGQFDEAIHFYSVAG 132 (1074)
Q Consensus 87 ~~~~~~~~a~~i~~~~~~~~~~~~la~~~~~~g~~~~Ai~~y~~a~ 132 (1074)
.+.+......+|..+...|++++|++.+.++-
T Consensus 64 --------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 95 (100)
T cd00189 64 --------------DPDNAKAYYNLGLAYYKLGKYEEALEAYEKAL 95 (100)
T ss_pred --------------CCcchhHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 11233567788899999999999998876653
No 418
>PLN02815 L-aspartate oxidase
Probab=92.94 E-value=0.4 Score=59.15 Aligned_cols=158 Identities=8% Similarity=0.007 Sum_probs=0.0
Q ss_pred hhhhhccccchHHHHHHHhh----hhhhhcccccc-ccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEeeeEEEecCC
Q psy14927 796 VVLNTLGNCAAVQANYHLAT----KLFTQAGDKGV-KLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPN 870 (1074)
Q Consensus 796 ~VviiGgG~AGl~aA~~la~----~l~e~~~~~g~-~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~v~~id~~ 870 (1074)
+|||||+|.||+.||+.+++ +++++.+..++ ...-..-........+.....+.+.++
T Consensus 31 DVlVVG~G~AGl~AAl~Aae~G~VvlleK~~~~gg~s~~a~Ggi~a~~~~~Ds~e~~~~d~~~----------------- 93 (594)
T PLN02815 31 DFLVIGSGIAGLRYALEVAEYGTVAIITKDEPHESNTNYAQGGVSAVLDPSDSVESHMRDTIV----------------- 93 (594)
T ss_pred CEEEECccHHHHHHHHHHhhCCCEEEEECCCCCCCcHHHhhcccccCCCCCCCHHHHHHHHHH-----------------
Q ss_pred eEEEEeCCCCeeEEEcCeEEEccCCCCCCCCCCCCCCcceechhhHhcchH-----hhHHhhcCCcEEEEe---------
Q psy14927 871 TVTVIKSDGSTEEVKTKNILIATGSEVTPFPGIEVDEETIVSSTGALSLKK-----GSVWGRLGAEVTAIE--------- 936 (1074)
Q Consensus 871 ~~~v~~~~G~~~~i~~d~lIIATG~~p~~ipgi~~~~~~v~t~~~~~~~~~-----A~~l~~~G~~Vtlv~--------- 936 (1074)
.+......+-+..+.+ -.+|.++|.....-.
T Consensus 94 -----------------------------------~g~~~~d~~lv~~~~~~s~e~i~~L~~~Gv~F~~~~~g~~~~~~~ 138 (594)
T PLN02815 94 -----------------------------------AGAFLCDEETVRVVCTEGPERVKELIAMGASFDHGEDGNLHLARE 138 (594)
T ss_pred -----------------------------------hccCCCcHHHHHHHHHHHHHHHHHHHHhCCeeeecCCCCccccCC
Q ss_pred ------cCCccCCCCCCHHHHHHHHHHHHhC-CCEEEeCceEEEEEecCC-----eEEEEEeeccCCCCceEEEcCEEEE
Q psy14927 937 ------FMNAIGGMGIDGEVAKQFQRILGKQ-GMQFKLGTKVTGASKSGD-----NITVTIENVKDPTKKEELSCDALLV 1004 (1074)
Q Consensus 937 ------~~~~~~~~~~~~~~~~~~~~~l~~~-gV~i~~~~~v~~i~~~~~-----~~~v~~~~~~~~g~~~~i~~D~vi~ 1004 (1074)
|.-... ......+...+.+.+.+. ||+++.++.+.++..+++ .+.+...+.. +|+...+.+..||+
T Consensus 139 gg~s~~R~~~~~-d~tG~~i~~~L~~~~~~~~~i~i~~~~~~~~Li~~~~g~~~~v~Gv~~~~~~-~g~~~~i~AkaVIL 216 (594)
T PLN02815 139 GGHSHHRIVHAA-DMTGREIERALLEAVKNDPNITFFEHHFAIDLLTSQDGGSIVCHGADVLDTR-TGEVVRFISKVTLL 216 (594)
T ss_pred CCCccCceeecC-CCCHHHHHHHHHHHHHhcCCCEEEeceEhheeeeecCCCccEEEEEEEEEcC-CCeEEEEEeceEEE
Q ss_pred ccC
Q psy14927 1005 CVG 1007 (1074)
Q Consensus 1005 a~G 1007 (1074)
|||
T Consensus 217 ATG 219 (594)
T PLN02815 217 ASG 219 (594)
T ss_pred cCC
No 419
>KOG0553|consensus
Probab=92.91 E-value=0.35 Score=52.56 Aligned_cols=75 Identities=21% Similarity=0.237 Sum_probs=49.6
Q ss_pred HHhccCHHHHHHHHHHhhCh--------hhhhhHhhccCCHHHHHHHHH-----hcCChHHHHHHHHHHHhcCChHHHHH
Q psy14927 60 IESTEDMDLAMKYYEEARDY--------LSMVRVLCFLQDFSRAAELAN-----ASGDTAAAYHLARQYENSGQFDEAIH 126 (1074)
Q Consensus 60 ~e~~~~~~~A~~~y~~a~d~--------~~~vr~l~~~~~~~~a~~i~~-----~~~~~~~~~~la~~~~~~g~~~~Ai~ 126 (1074)
+...++|++|+..|.+|=.+ ++-.-.|+.||..+.|.+-|+ ++...-+..+|++-|..+|++.+|++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~ 170 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIE 170 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHH
Confidence 33455555555555554333 233334666666666666555 33455677799999999999999999
Q ss_pred HHHHhCCh
Q psy14927 127 FYSVAGSC 134 (1074)
Q Consensus 127 ~y~~a~~~ 134 (1074)
+|.++-.+
T Consensus 171 aykKaLel 178 (304)
T KOG0553|consen 171 AYKKALEL 178 (304)
T ss_pred HHHhhhcc
Confidence 99987553
No 420
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=92.90 E-value=0.073 Score=67.89 Aligned_cols=28 Identities=7% Similarity=0.014 Sum_probs=24.0
Q ss_pred hhhhhccccchHHHHHHHhh-------hhhhhccc
Q psy14927 796 VVLNTLGNCAAVQANYHLAT-------KLFTQAGD 823 (1074)
Q Consensus 796 ~VviiGgG~AGl~aA~~la~-------~l~e~~~~ 823 (1074)
+|+||||||+|+.+|+.|++ +++|+.+.
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~ 36 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP 36 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence 38999999999999999986 67887664
No 421
>PTZ00367 squalene epoxidase; Provisional
Probab=92.77 E-value=0.17 Score=61.95 Aligned_cols=29 Identities=14% Similarity=0.006 Sum_probs=24.7
Q ss_pred chhhhhhccccchHHHHHHHhh-----hhhhhcc
Q psy14927 794 RQVVLNTLGNCAAVQANYHLAT-----KLFTQAG 822 (1074)
Q Consensus 794 k~~VviiGgG~AGl~aA~~la~-----~l~e~~~ 822 (1074)
..+|+||||||+|+++|+.|++ +++|+.+
T Consensus 33 ~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~ 66 (567)
T PTZ00367 33 DYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL 66 (567)
T ss_pred CccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence 4459999999999999999998 6777654
No 422
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=92.71 E-value=0.7 Score=52.05 Aligned_cols=104 Identities=22% Similarity=0.231 Sum_probs=75.1
Q ss_pred HHhhhcCCHHHHHHHHHHcCcc--cchh----hhHhhhcHHHHHHHhhc-----CCChHHHHHHHHHHHhccCHHHHHHH
Q psy14927 4 EETMKNGDIDRAIRMFEKAETH--QQHV----PRMLLENTDKLEKYIIQ-----SKDPVLLKWWAQYIESTEDMDLAMKY 72 (1074)
Q Consensus 4 ~~~~~~g~~~eA~~~Ye~~~~~--~~~~----~~~~~~~~~~~~~~~~~-----~~~~~l~~~~a~~~e~~~~~~~A~~~ 72 (1074)
+.+...|..++|.++-+.+-.+ |.+. |++-.+++..+.+.+++ +++|.|+..+|+.+..++.|.+|..+
T Consensus 271 ~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~ 350 (400)
T COG3071 271 ERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEA 350 (400)
T ss_pred HHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHH
Confidence 4577888899998888877644 3232 33333566666666665 78899999999999999999999999
Q ss_pred HHHhhChhhhhhHhhccCCHHHHHHHHHhcCChHHHHHHHHHHHhcCChHHHHHHHH
Q psy14927 73 YEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAAYHLARQYENSGQFDEAIHFYS 129 (1074)
Q Consensus 73 y~~a~d~~~~vr~l~~~~~~~~a~~i~~~~~~~~~~~~la~~~~~~g~~~~Ai~~y~ 129 (1074)
+++|-++. + +...+..+|+.|+++|+...|-+.+.
T Consensus 351 leaAl~~~-----------~-----------s~~~~~~la~~~~~~g~~~~A~~~r~ 385 (400)
T COG3071 351 LEAALKLR-----------P-----------SASDYAELADALDQLGEPEEAEQVRR 385 (400)
T ss_pred HHHHHhcC-----------C-----------ChhhHHHHHHHHHHcCChHHHHHHHH
Confidence 99876651 1 44556677777777777777766544
No 423
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=92.68 E-value=0.3 Score=59.32 Aligned_cols=101 Identities=14% Similarity=-0.005 Sum_probs=0.0
Q ss_pred hhhhhccccchHHHHHHHhh-----hhhhhcccccccc-----------------chhhhhhhhhHH-------------
Q psy14927 796 VVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKL-----------------NLETMMGTKSAA------------- 840 (1074)
Q Consensus 796 ~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~-----------------~~~~~~~~~~~~------------- 840 (1074)
+|||||||..|+++|+.+++ .++|+.+..++.- ++.-......+.
T Consensus 8 DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d~~~GtS~~ss~lihgG~ryl~~~~~~l~~e~l~er~~l~~~~p~~~~~ 87 (508)
T PRK12266 8 DLLVIGGGINGAGIARDAAGRGLSVLLCEQDDLASATSSASTKLIHGGLRYLEHYEFRLVREALAEREVLLRMAPHIIWP 87 (508)
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCccccccccccchHHHhhhccHHHHHHHHHHHHHHHHhCCCcccc
Q ss_pred ------------------------------------------------------------------HhhhhhhHHHHhhh
Q psy14927 841 ------------------------------------------------------------------VKALTGGIAHLFKS 854 (1074)
Q Consensus 841 ------------------------------------------------------------------~~~l~~~~~~~l~~ 854 (1074)
...+...+......
T Consensus 88 l~~~~~~~~~~~~~~~~~~gl~lyd~~~~~~~l~~~~~~~~~~~~~~~~L~~~l~g~~~~~dg~vd~~rl~~~l~~~A~~ 167 (508)
T PRK12266 88 MRFVLPHRPHLRPAWMIRAGLFLYDHLGKRKSLPGSRGLDLGRDPAGSPLKPEITRGFEYSDCWVDDARLVVLNARDAAE 167 (508)
T ss_pred cceEEEecccccchHHHHHHHHHHHhhcCCCCCChhhhhchhhcccCCCcchhhcEEEEEcCcccCHHHHHHHHHHHHHH
Q ss_pred CCeEEEee-eEEEecC--CeEEEEeCC---CCeeEEEcCeEEEccCCC
Q psy14927 855 NKVTQLNG-HGKITGP--NTVTVIKSD---GSTEEVKTKNILIATGSE 896 (1074)
Q Consensus 855 ~gV~~~~g-~v~~id~--~~~~v~~~~---G~~~~i~~d~lIIATG~~ 896 (1074)
.|++++.+ .|+.+.. +.+.|++.+ |+..++.++.||+|||.+
T Consensus 168 ~Ga~i~~~~~V~~i~~~~~~~~v~~~~~~~g~~~~i~a~~VVnAaG~w 215 (508)
T PRK12266 168 RGAEILTRTRVVSARRENGLWHVTLEDTATGKRYTVRARALVNAAGPW 215 (508)
T ss_pred cCCEEEcCcEEEEEEEeCCEEEEEEEEcCCCCEEEEEcCEEEECCCcc
No 424
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=92.58 E-value=0.2 Score=65.74 Aligned_cols=83 Identities=14% Similarity=0.157 Sum_probs=55.8
Q ss_pred hhhhhccccchHHHHHHHhh------hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEeee-EEEec
Q psy14927 796 VVLNTLGNCAAVQANYHLAT------KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGH-GKITG 868 (1074)
Q Consensus 796 ~VviiGgG~AGl~aA~~la~------~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~-v~~id 868 (1074)
+|+|||+|+.|+..|..|++ ++++..+.. ...+...+++.||+++.+. ++.+.
T Consensus 319 ~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~~~--------------------~~~l~~~L~~~GV~i~~~~~v~~i~ 378 (985)
T TIGR01372 319 RIVVATNNDSAYRAAADLLAAGIAVVAIIDARADV--------------------SPEARAEARELGIEVLTGHVVAATE 378 (985)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCceEEEEccCcch--------------------hHHHHHHHHHcCCEEEcCCeEEEEe
Confidence 49999999999999999987 222221110 1113456778899999994 56665
Q ss_pred CCe--EEEEeC--CCCeeEEEcCeEEEccCCCCC
Q psy14927 869 PNT--VTVIKS--DGSTEEVKTKNILIATGSEVT 898 (1074)
Q Consensus 869 ~~~--~~v~~~--~G~~~~i~~d~lIIATG~~p~ 898 (1074)
.+. ..|++. +|+..++.+|.|++++|..|.
T Consensus 379 g~~~v~~V~l~~~~g~~~~i~~D~V~va~G~~Pn 412 (985)
T TIGR01372 379 GGKRVSGVAVARNGGAGQRLEADALAVSGGWTPV 412 (985)
T ss_pred cCCcEEEEEEEecCCceEEEECCEEEEcCCcCch
Confidence 432 123332 344478999999999999873
No 425
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=92.50 E-value=0.34 Score=55.68 Aligned_cols=96 Identities=19% Similarity=0.285 Sum_probs=67.9
Q ss_pred HHhhcCCcEEEEecC-CccCCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCe-EEEEEeeccCCCCceEEEcCE
Q psy14927 924 VWGRLGAEVTAIEFM-NAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDN-ITVTIENVKDPTKKEELSCDA 1001 (1074)
Q Consensus 924 ~l~~~G~~Vtlv~~~-~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~-~~v~~~~~~~~g~~~~i~~D~ 1001 (1074)
.+...|....++.-. +++. ....+.+.+.+.+.+++.|++++++++|..++-.++. ..+.+.+ +.++++|.
T Consensus 149 e~~aa~a~~eil~~~~rHiG-TD~l~~vvkni~~~l~~~G~ei~f~t~VeDi~~~~~~~~~v~~~~------g~~i~~~~ 221 (486)
T COG2509 149 EFRAAGAGEEILPIYQRHIG-TDILPKVVKNIREYLESLGGEIRFNTEVEDIEIEDNEVLGVKLTK------GEEIEADY 221 (486)
T ss_pred HHHHhCCCceeeeccccccC-ccchHHHHHHHHHHHHhcCcEEEeeeEEEEEEecCCceEEEEccC------CcEEecCE
Confidence 344556655555443 4444 6677889999999999999999999999999876554 3444433 67999999
Q ss_pred EEEccCCcccCCccC-ccccCcccCC
Q psy14927 1002 LLVCVGRRPYTHNLG-LEEIGIEKDE 1026 (1074)
Q Consensus 1002 vi~a~G~~p~~~~l~-l~~~gl~ld~ 1026 (1074)
||+|+|+.....+-. .+..|+.+..
T Consensus 222 vvlA~Grsg~dw~~~l~~K~Gv~~~~ 247 (486)
T COG2509 222 VVLAPGRSGRDWFEMLHKKLGVKMRA 247 (486)
T ss_pred EEEccCcchHHHHHHHHHhcCccccc
Confidence 999999987655322 2333555544
No 426
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=92.50 E-value=0.43 Score=63.72 Aligned_cols=61 Identities=13% Similarity=0.172 Sum_probs=40.3
Q ss_pred HHHHHHHHHHh---CCCEEEeCceEEEEEecC----------CeEEEEEeec-cCCCCceEEEcCEEEEccCCcc
Q psy14927 950 VAKQFQRILGK---QGMQFKLGTKVTGASKSG----------DNITVTIENV-KDPTKKEELSCDALLVCVGRRP 1010 (1074)
Q Consensus 950 ~~~~~~~~l~~---~gV~i~~~~~v~~i~~~~----------~~~~v~~~~~-~~~g~~~~i~~D~vi~a~G~~p 1010 (1074)
+...+.+.+++ .||+|++++.++++..++ ..+.|...+. ..+|+...+.++.||+|||--.
T Consensus 546 i~~~l~~~~~~~~~~gv~i~~~t~~~~LI~d~~~~~~G~~~~~V~Gv~~~~~~~~~g~~~~i~AkaVILATGGf~ 620 (1167)
T PTZ00306 546 IMRTLEDHIRTKLSGRVTIMTETTVTSLLSESSARPDGVREIRVTGVRYKQASDASGQVMDLLADAVILATGGFS 620 (1167)
T ss_pred HHHHHHHHHHhhccCCcEEEECCEEEEEEecCCcccCCCccceEEEEEEEecccCCCcEEEEEeceEEEecCCcc
Confidence 44555565554 499999999999987542 1244555542 0025556899999999998533
No 427
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=92.49 E-value=0.95 Score=42.39 Aligned_cols=81 Identities=12% Similarity=0.003 Sum_probs=59.9
Q ss_pred hHHHHHHHHHHHhccCHHHHHHHHHHhhC-----------hhhhhhHhhccCCHHHHHHHHHh-----cCC---hHHHHH
Q psy14927 50 PVLLKWWAQYIESTEDMDLAMKYYEEARD-----------YLSMVRVLCFLQDFSRAAELANA-----SGD---TAAAYH 110 (1074)
Q Consensus 50 ~~l~~~~a~~~e~~~~~~~A~~~y~~a~d-----------~~~~vr~l~~~~~~~~a~~i~~~-----~~~---~~~~~~ 110 (1074)
++.+-..|..+...|++++|.+.|..+-. ...+.+++...|++++|.+..+. +++ ..+.+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 34556678888888899989888877622 12356778888888888887762 122 456788
Q ss_pred HHHHHHhcCChHHHHHHHHH
Q psy14927 111 LARQYENSGQFDEAIHFYSV 130 (1074)
Q Consensus 111 la~~~~~~g~~~~Ai~~y~~ 130 (1074)
+|..+.+.|++++|+++|.+
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~ 101 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQ 101 (119)
T ss_pred HHHHHHHhCChHHHHHHHHH
Confidence 99999999999999988754
No 428
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=92.45 E-value=1.2 Score=44.29 Aligned_cols=88 Identities=16% Similarity=0.180 Sum_probs=59.1
Q ss_pred HHHHHHhccCHHHHHHHHHHhhChhhhhhHhhccCCHHHHHHHHHhcCChHHHHHHHHHHHhcCChHHHHHHHHHhCChH
Q psy14927 56 WAQYIESTEDMDLAMKYYEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAAYHLARQYENSGQFDEAIHFYSVAGSCG 135 (1074)
Q Consensus 56 ~a~~~e~~~~~~~A~~~y~~a~d~~~~vr~l~~~~~~~~a~~i~~~~~~~~~~~~la~~~~~~g~~~~Ai~~y~~a~~~~ 135 (1074)
||--+...|++++|.++|. +||... +.+....+.||-.+...|++++||+.|.++...+
T Consensus 41 ~A~~ly~~G~l~~A~~~f~----------~L~~~D-----------p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~ 99 (157)
T PRK15363 41 YAMQLMEVKEFAGAARLFQ----------LLTIYD-----------AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK 99 (157)
T ss_pred HHHHHHHCCCHHHHHHHHH----------HHHHhC-----------cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 3555566666666665553 333332 3367788899999999999999999988765544
Q ss_pred HHHHHHHHhCchHHHHHHhhhcCchhHHHHHHHHccCChhHHHHHHHHhCChHHHHHHHHh
Q psy14927 136 NAVRLCKEQALDDQLWNLALSAGPSEQIEAATYLETIEPDKAVLLYHKAGALHKALDLAFK 196 (1074)
Q Consensus 136 ~A~~la~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~~~~~~A~~ly~kaG~~~kAl~l~~~ 196 (1074)
++.+. -+..++..|.+.|+...|.+.+..
T Consensus 100 -------------------~ddp~-------------~~~~ag~c~L~lG~~~~A~~aF~~ 128 (157)
T PRK15363 100 -------------------IDAPQ-------------APWAAAECYLACDNVCYAIKALKA 128 (157)
T ss_pred -------------------CCCch-------------HHHHHHHHHHHcCCHHHHHHHHHH
Confidence 21111 135678888888888888776544
No 429
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=92.40 E-value=0.93 Score=56.04 Aligned_cols=153 Identities=8% Similarity=-0.080 Sum_probs=0.0
Q ss_pred hhhhhccccchHHHHHHHh----hhhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEeeeEEEecCCe
Q psy14927 796 VVLNTLGNCAAVQANYHLA----TKLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNT 871 (1074)
Q Consensus 796 ~VviiGgG~AGl~aA~~la----~~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~v~~id~~~ 871 (1074)
+|||||||.||+.||+.++ . ...
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e-----------------------------------------------------~G~ 27 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDK-----------------------------------------------------KGL 27 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhh-----------------------------------------------------CCC
Q ss_pred EEEEeCCCCeeEEEcCeEEEccC--CCCCCCCCCCCCCcceechhhHhcchH------------------hhHHhhcCCc
Q psy14927 872 VTVIKSDGSTEEVKTKNILIATG--SEVTPFPGIEVDEETIVSSTGALSLKK------------------GSVWGRLGAE 931 (1074)
Q Consensus 872 ~~v~~~~G~~~~i~~d~lIIATG--~~p~~ipgi~~~~~~v~t~~~~~~~~~------------------A~~l~~~G~~ 931 (1074)
..+.++.+ ....... +|.| +-...+..-.+....-....+.+.... -..|.++|..
T Consensus 28 ~VilieK~--~~~~s~s--~A~G~~gi~~~~~~~~g~Ds~e~~~~d~~~~~~gl~d~~lV~~lv~~s~~~i~~L~~~Gv~ 103 (614)
T TIGR02061 28 KIVLVEKA--NLERSGA--VAQGLSAINTYLGTRFGENNAEDYVRYVRTDLMGLVREDLIFDMARHVDDSVHLFEEWGLP 103 (614)
T ss_pred eEEEEEcc--CCCCCCc--cccccchhhhhhhcccCCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCC
Q ss_pred EEEEecCCccCCCCC-------CHHHHHHHHHHHHhCCCEEEeCceEEEEEec----CCeEEEEEeeccCCCCceEEEcC
Q psy14927 932 VTAIEFMNAIGGMGI-------DGEVAKQFQRILGKQGMQFKLGTKVTGASKS----GDNITVTIENVKDPTKKEELSCD 1000 (1074)
Q Consensus 932 Vtlv~~~~~~~~~~~-------~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~----~~~~~v~~~~~~~~g~~~~i~~D 1000 (1074)
........... +.- ...+...+...+.+.+++++.++.+.++..+ +..+.+...+.. +|+...+.++
T Consensus 104 F~~~~~~G~~~-~~g~~~~~~gG~~~~r~l~~~l~~~~~~i~~~~~v~~Ll~d~~~~GrV~Gv~~~~~~-~g~~~~i~Ak 181 (614)
T TIGR02061 104 LWIKPEDGKYV-REGRWQIMIHGESYKPIVAEAAKNALGDIFERIFIVKLLLDKNTPNRIAGAVGFNVR-ANEVHVFKAK 181 (614)
T ss_pred ceecCCCCccc-cCCCcccCcCchhHHHHHHHHHHhCCCeEEcccEEEEEEecCCCCCeEEEEEEEEeC-CCcEEEEECC
Q ss_pred EEEEccC
Q psy14927 1001 ALLVCVG 1007 (1074)
Q Consensus 1001 ~vi~a~G 1007 (1074)
.||+|||
T Consensus 182 aVVLATG 188 (614)
T TIGR02061 182 TVIVAAG 188 (614)
T ss_pred EEEECCC
No 430
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=92.31 E-value=24 Score=40.16 Aligned_cols=246 Identities=20% Similarity=0.168 Sum_probs=134.1
Q ss_pred hcHHHHHHHhhcC----CChHHHHHH-HHHHHhccCHHHHHHHHHHhhCh---------hhhhhHhhccCCHHHHHHHHH
Q psy14927 35 ENTDKLEKYIIQS----KDPVLLKWW-AQYIESTEDMDLAMKYYEEARDY---------LSMVRVLCFLQDFSRAAELAN 100 (1074)
Q Consensus 35 ~~~~~~~~~~~~~----~~~~l~~~~-a~~~e~~~~~~~A~~~y~~a~d~---------~~~vr~l~~~~~~~~a~~i~~ 100 (1074)
++|.+++.++.++ +.|.|.-.. |+.+-..|+++.|=++-..+-.- ...+|++...|+.+-|..=+.
T Consensus 98 G~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~ 177 (400)
T COG3071 98 GDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVD 177 (400)
T ss_pred CcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHH
Confidence 6888888888873 334444433 77777888888887766664333 344566666666655544332
Q ss_pred -----hcCChHHHHHHHHHHHhcCChHHHHHHH---HHhCCh--HHHHHHHHHhCchHHHHHHhhh-cCchhHHHHHHHH
Q psy14927 101 -----ASGDTAAAYHLARQYENSGQFDEAIHFY---SVAGSC--GNAVRLCKEQALDDQLWNLALS-AGPSEQIEAATYL 169 (1074)
Q Consensus 101 -----~~~~~~~~~~la~~~~~~g~~~~Ai~~y---~~a~~~--~~A~~la~~~~~~~~~~~l~~~-~~~~~~~~~A~~~ 169 (1074)
.+..+.......+.|...|++.+...+. .++|.+ +|+.+|=.+- +..+..+ ..++.-.-.-+|.
T Consensus 178 ~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a-----~~glL~q~~~~~~~~gL~~~W 252 (400)
T COG3071 178 QLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQA-----WEGLLQQARDDNGSEGLKTWW 252 (400)
T ss_pred HHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHH-----HHHHHHHHhccccchHHHHHH
Confidence 2445566666667777777776665443 233332 2233221111 1111111 1111111122333
Q ss_pred cc------CCh---hHHHHHHHHhCChHHHHHHHHhhccCCcchHHHHHHHHHHhcCCChhhHHHhhhhcc--hHHHHHH
Q psy14927 170 ET------IEP---DKAVLLYHKAGALHKALDLAFKLTLSNSGLVFQIKAMKCLLKSGDTNKIIFFAGVSR--MKEIYVM 238 (1074)
Q Consensus 170 e~------~~~---~~A~~ly~kaG~~~kAl~l~~~~~~~~~~~~~~~~a~k~l~~~~~~~~~i~~a~~~r--~~~l~~~ 238 (1074)
.+ +++ ...+..|..+|....|.++..+. |-+..|.+ .+.+...++ +.+=-++
T Consensus 253 ~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~----------------Lk~~~D~~-L~~~~~~l~~~d~~~l~k 315 (400)
T COG3071 253 KNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDA----------------LKRQWDPR-LCRLIPRLRPGDPEPLIK 315 (400)
T ss_pred HhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHH----------------HHhccChh-HHHHHhhcCCCCchHHHH
Confidence 22 122 34677888899999998887762 22344444 333333332 1222234
Q ss_pred HHHHHhcCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHH-------------HhHHHHhhcCHHHHHHHHHHHHHHHH
Q psy14927 239 AANYLQSSDWKSQPELLKSIISFYSKGKAPHLLANFYVSC-------------AQVEIDEFGNYEKGLGALNEAKRCLL 304 (1074)
Q Consensus 239 aa~yl~~~~~~~~~~~~~~i~~~Y~k~~~~~~aa~~~~~~-------------a~~ei~e~~~y~~a~~~l~~a~~~l~ 304 (1074)
+++.-.+. ...+|.....+-++|.|-|.|.+|..++... |..- +.-|+-..|.+...++.....
T Consensus 316 ~~e~~l~~-h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~-~~~g~~~~A~~~r~e~L~~~~ 392 (400)
T COG3071 316 AAEKWLKQ-HPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADAL-DQLGEPEEAEQVRREALLLTR 392 (400)
T ss_pred HHHHHHHh-CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHH-HHcCChHHHHHHHHHHHHHhc
Confidence 44444444 4566889999999999999999988766643 3332 445555555555555554333
No 431
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=92.16 E-value=1.1 Score=42.73 Aligned_cols=82 Identities=23% Similarity=0.154 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHhhC--------HHHHHH---HHHHcCCHHHHHHHHHh----cCC----cHHHHH
Q psy14927 624 RVLLKWWAQYIESTEDMDLAMKYYEEARD--------YLSMVR---VLCFLQDFSRAAELANA----SGD----TAAAYH 684 (1074)
Q Consensus 624 ~~l~~~~a~~~e~~~~~~~A~~~y~~ag~--------~~~ai~---~~~~~~~~~~a~~v~~~----~~~----~~~~~~ 684 (1074)
|++....|...+..|+.++|+.+|.+|-. .+-.|. .|..+|+.++|+.+.++ .++ ......
T Consensus 1 ~~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f 80 (120)
T PF12688_consen 1 PRALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVF 80 (120)
T ss_pred CchHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHH
Confidence 34667788889999999999999998822 122222 27788888888877742 222 122225
Q ss_pred HHHHHHhcCCHHHHHHHHHHc
Q psy14927 685 LARQYENSGQFDEAIHFYSVA 705 (1074)
Q Consensus 685 ~A~~~~~~g~~~~A~~~~~ka 705 (1074)
+|..+...|.+++|...++.+
T Consensus 81 ~Al~L~~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 81 LALALYNLGRPKEALEWLLEA 101 (120)
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 577777777777777766654
No 432
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=92.06 E-value=3.5 Score=40.76 Aligned_cols=98 Identities=22% Similarity=0.176 Sum_probs=63.8
Q ss_pred cCCHHHHHH----HHHhcCCcH----HHHHHHHHHHhcCCHHHHHHHHHHcCC--HHHH----HH--H------hccHHH
Q psy14927 663 LQDFSRAAE----LANASGDTA----AAYHLARQYENSGQFDEAIHFYSVAGS--CGNA----VR--L------CGQLDA 720 (1074)
Q Consensus 663 ~~~~~~a~~----v~~~~~~~~----~~~~~A~~~~~~g~~~~A~~~~~kag~--~~~A----v~--m------a~~w~~ 720 (1074)
.+++.++.. ++...+++. ....+|..+...|++++|...|-.+-. +... +. + -+++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 556665554 444555542 222789999999999999999976632 2111 12 2 488999
Q ss_pred HHHHHHHhCC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy14927 721 VESIASELNV-QSDQDLILKCASYFARREHHDRAVQMYAIA 760 (1074)
Q Consensus 721 a~~~A~~~~~-~~~~~~~~~~a~~~~~~~~~~~Ai~~y~~a 760 (1074)
|....+...+ ...+..+.-.|.-+...|+++.|++.|.++
T Consensus 104 Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 104 ALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 9988877533 233355556666667788888888777764
No 433
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=92.06 E-value=0.24 Score=43.14 Aligned_cols=67 Identities=25% Similarity=0.333 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHhhChhhhhhHhhccCCHHHHHHHHHhcCChHHHHHHHHHHHhcCChHHHHHHHHH
Q psy14927 51 VLLKWWAQYIESTEDMDLAMKYYEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAAYHLARQYENSGQFDEAIHFYSV 130 (1074)
Q Consensus 51 ~l~~~~a~~~e~~~~~~~A~~~y~~a~d~~~~vr~l~~~~~~~~a~~i~~~~~~~~~~~~la~~~~~~g~~~~Ai~~y~~ 130 (1074)
..+..+|..+...|+|++|+.+|.++=+. ....|+-. .. -......+|..|...|++++|+++|.+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~------~~~~~~~~--~~------~a~~~~~lg~~~~~~g~~~~A~~~~~~ 71 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDI------EEQLGDDH--PD------TANTLNNLGECYYRLGDYEEALEYYQK 71 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH------HHHTTTHH--HH------HHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH------HHHHCCCC--HH------HHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 45677799999999999999999776544 22334321 11 133467999999999999999999876
Q ss_pred h
Q psy14927 131 A 131 (1074)
Q Consensus 131 a 131 (1074)
+
T Consensus 72 a 72 (78)
T PF13424_consen 72 A 72 (78)
T ss_dssp H
T ss_pred H
Confidence 4
No 434
>KOG1129|consensus
Probab=92.04 E-value=3.4 Score=45.41 Aligned_cols=107 Identities=18% Similarity=0.144 Sum_probs=77.2
Q ss_pred HHHHHhccCHHHHHHHHHHhhC-------hhhhhhHhhccCCHHHHHHHHHh-----cCChHHHHHHHHHHHhcCChHHH
Q psy14927 57 AQYIESTEDMDLAMKYYEEARD-------YLSMVRVLCFLQDFSRAAELANA-----SGDTAAAYHLARQYENSGQFDEA 124 (1074)
Q Consensus 57 a~~~e~~~~~~~A~~~y~~a~d-------~~~~vr~l~~~~~~~~a~~i~~~-----~~~~~~~~~la~~~~~~g~~~~A 124 (1074)
|+-+..-|.+..|++.+.++=. |.=+-++|..+.+|..|..+..+ +.++.-..-+||+++..|+.++|
T Consensus 230 gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a 309 (478)
T KOG1129|consen 230 GKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDA 309 (478)
T ss_pred HHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHH
Confidence 8889999999999998887543 34455678889999999888763 45677788899999999999999
Q ss_pred HHHHHHhCChHHHHHHHHHhCchHHHHHHhhhcCchhHHH-HHHHHccCChhHHHHHHHH
Q psy14927 125 IHFYSVAGSCGNAVRLCKEQALDDQLWNLALSAGPSEQIE-AATYLETIEPDKAVLLYHK 183 (1074)
Q Consensus 125 i~~y~~a~~~~~A~~la~~~~~~~~~~~l~~~~~~~~~~~-~A~~~e~~~~~~A~~ly~k 183 (1074)
+++|.+.- +.| ....+...- +-.||-.++++.|..+|.+
T Consensus 310 ~~lYk~vl---------k~~-----------~~nvEaiAcia~~yfY~~~PE~AlryYRR 349 (478)
T KOG1129|consen 310 LQLYKLVL---------KLH-----------PINVEAIACIAVGYFYDNNPEMALRYYRR 349 (478)
T ss_pred HHHHHHHH---------hcC-----------CccceeeeeeeeccccCCChHHHHHHHHH
Confidence 99997532 222 111111111 2356667777888888875
No 435
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=92.03 E-value=0.88 Score=47.77 Aligned_cols=127 Identities=20% Similarity=0.138 Sum_probs=82.1
Q ss_pred cHHHHHHHhhc-----CCChHHHHHHHHHHHhccCHHHHHHHHHHh-------hChh-hhhhHhhccCCHHHHHHHHHhc
Q psy14927 36 NTDKLEKYIIQ-----SKDPVLLKWWAQYIESTEDMDLAMKYYEEA-------RDYL-SMVRVLCFLQDFSRAAELANAS 102 (1074)
Q Consensus 36 ~~~~~~~~~~~-----~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a-------~d~~-~~vr~l~~~~~~~~a~~i~~~~ 102 (1074)
++..+...+.+ +++..-|.-.|.++...|+.+.|-+.|.+| ||+. +---+||.+|.+++|..--+..
T Consensus 50 d~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~A 129 (250)
T COG3063 50 DYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERA 129 (250)
T ss_pred CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHH
Confidence 56666655555 466667888899999999999999999996 4443 3345599999998887765532
Q ss_pred ------CCh-HHHHHHHHHHHhcCChHHHHHHHHHhCChHHHHHHHHHhCchHHHHHHhhhcCchhHHHHHHHHccCChh
Q psy14927 103 ------GDT-AAAYHLARQYENSGQFDEAIHFYSVAGSCGNAVRLCKEQALDDQLWNLALSAGPSEQIEAATYLETIEPD 175 (1074)
Q Consensus 103 ------~~~-~~~~~la~~~~~~g~~~~Ai~~y~~a~~~~~A~~la~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~~~~~ 175 (1074)
+.. .....++-...++|+.+.|-++|.++-..+ ++.++.....+=.+++.+++-
T Consensus 130 l~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-------------------p~~~~~~l~~a~~~~~~~~y~ 190 (250)
T COG3063 130 LADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-------------------PQFPPALLELARLHYKAGDYA 190 (250)
T ss_pred HhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-------------------cCCChHHHHHHHHHHhcccch
Confidence 122 233455555567788888888877654433 333333333344455556666
Q ss_pred HHHHHH
Q psy14927 176 KAVLLY 181 (1074)
Q Consensus 176 ~A~~ly 181 (1074)
.|-.+|
T Consensus 191 ~Ar~~~ 196 (250)
T COG3063 191 PARLYL 196 (250)
T ss_pred HHHHHH
Confidence 655444
No 436
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=91.99 E-value=2.5 Score=46.35 Aligned_cols=122 Identities=18% Similarity=0.156 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHhCCCEEEeCceEEEEEecCC-e-EEEEEeec----c-CCCCceEEEcCEEEEccCCcccCC-ccCccc
Q psy14927 948 GEVAKQFQRILGKQGMQFKLGTKVTGASKSGD-N-ITVTIENV----K-DPTKKEELSCDALLVCVGRRPYTH-NLGLEE 1019 (1074)
Q Consensus 948 ~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~-~-~~v~~~~~----~-~~g~~~~i~~D~vi~a~G~~p~~~-~l~l~~ 1019 (1074)
..+...+.+...+.|++++.++.+..+..+++ . ..+.+... . ......++.++.||.|+|...... .+ ...
T Consensus 104 ~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a~v~~~l-~~~ 182 (257)
T PRK04176 104 VEAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDAEVVSVL-ARK 182 (257)
T ss_pred HHHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCcHHHHHH-HHH
Confidence 45666677777889999999999999875444 2 22332210 0 001346899999999999643221 10 000
Q ss_pred ---cCccc--------CCCCCeeeCCCCCCCCCCEEEecccCC----CCCc---HHHHHHHHHHHHHHhh
Q psy14927 1020 ---IGIEK--------DEKGRVPVNSRFQTVIPNIFAIGDCIH----GPML---AHKAEDEGIVCVEGIA 1071 (1074)
Q Consensus 1020 ---~gl~l--------d~~G~I~Vd~~~~ts~~~IyAiGD~~~----~~~~---~~~A~~~G~~aA~~I~ 1071 (1074)
.+... +......|+.+- --+||+|++|=+++ .|.. -..=.-.|+.||.-|+
T Consensus 183 ~~~~~~~~~g~~~~~~~~~e~~v~~~t~-~~~~g~~~~gm~~~~~~~~~rmg~~fg~m~~sg~~~a~~~~ 251 (257)
T PRK04176 183 GPELGIEVPGEKSMWAERGEKLVVENTG-EVYPGLYVAGMAANAVHGLPRMGPIFGGMLLSGKKVAELIL 251 (257)
T ss_pred cCCcccccCCccccccCchHHHHHhcCC-eEcCCEEEeehhhhhhcCCCccCchhHhHHHhHHHHHHHHH
Confidence 01111 111112222221 24899999998765 1221 1122457888887765
No 437
>KOG1127|consensus
Probab=91.96 E-value=8.5 Score=48.37 Aligned_cols=113 Identities=17% Similarity=0.167 Sum_probs=65.6
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHhhChh--------hhhhHhhccCCHHHHHHHHHhcCChHH-------HHHHHHHHH
Q psy14927 52 LLKWWAQYIESTEDMDLAMKYYEEARDYL--------SMVRVLCFLQDFSRAAELANASGDTAA-------AYHLARQYE 116 (1074)
Q Consensus 52 l~~~~a~~~e~~~~~~~A~~~y~~a~d~~--------~~vr~l~~~~~~~~a~~i~~~~~~~~~-------~~~la~~~~ 116 (1074)
-+-.+|+++-..-++..|-+||.+|-+.+ ..+..+....+|++|..|+-.++..+. ..+++-+|.
T Consensus 494 af~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyL 573 (1238)
T KOG1127|consen 494 AFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYL 573 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhcccccc
Confidence 45556888888889999999999876653 244557777777777777543321111 113333333
Q ss_pred hcCChHHHHHHHHHhCChHHHHHHHHHhCchHHHHHHhhhcCchhHHHHHHHHccCChhHHHHHHHHhCChHHHHHHHHh
Q psy14927 117 NSGQFDEAIHFYSVAGSCGNAVRLCKEQALDDQLWNLALSAGPSEQIEAATYLETIEPDKAVLLYHKAGALHKALDLAFK 196 (1074)
Q Consensus 117 ~~g~~~~Ai~~y~~a~~~~~A~~la~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~~~~~~A~~ly~kaG~~~kAl~l~~~ 196 (1074)
+.++...||.-| +. ++...|.++ +-+.-+++.|+.+|++.-|++.+-+
T Consensus 574 ea~n~h~aV~~f-------------Qs----------ALR~dPkD~---------n~W~gLGeAY~~sGry~~AlKvF~k 621 (1238)
T KOG1127|consen 574 EAHNLHGAVCEF-------------QS----------ALRTDPKDY---------NLWLGLGEAYPESGRYSHALKVFTK 621 (1238)
T ss_pred CccchhhHHHHH-------------HH----------HhcCCchhH---------HHHHHHHHHHHhcCceehHHHhhhh
Confidence 333333333322 11 133333221 1146678888888888888888655
No 438
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=91.90 E-value=0.05 Score=65.05 Aligned_cols=33 Identities=24% Similarity=0.299 Sum_probs=29.7
Q ss_pred hhhhhccccchHHHHHHHhh-------hhhhhcccccccc
Q psy14927 796 VVLNTLGNCAAVQANYHLAT-------KLFTQAGDKGVKL 828 (1074)
Q Consensus 796 ~VviiGgG~AGl~aA~~la~-------~l~e~~~~~g~~~ 828 (1074)
+|+|||||++||+||+.|++ +++|+.+..||..
T Consensus 2 ~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr~ 41 (451)
T PRK11883 2 KVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKI 41 (451)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcceE
Confidence 48999999999999999997 7999999988854
No 439
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=91.84 E-value=0.2 Score=42.20 Aligned_cols=54 Identities=28% Similarity=0.287 Sum_probs=43.2
Q ss_pred hhhcCCHHHHHHHHHHcCcccchhhhHhhhcHHHHHHHhhcCCChHHHHHHHHHHHhccCHHHHHHHHHHhhCh
Q psy14927 6 TMKNGDIDRAIRMFEKAETHQQHVPRMLLENTDKLEKYIIQSKDPVLLKWWAQYIESTEDMDLAMKYYEEARDY 79 (1074)
Q Consensus 6 ~~~~g~~~eA~~~Ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~ 79 (1074)
|.+.|++++|+++|+++-..+ ++++.++..+|+.+...|++++|.+.+.+.-..
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~--------------------p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRN--------------------PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHT--------------------TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred ChhccCHHHHHHHHHHHHHHC--------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 457899999999999886333 556889999999999999999999888775544
No 440
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=91.67 E-value=0.24 Score=63.63 Aligned_cols=88 Identities=15% Similarity=0.133 Sum_probs=49.2
Q ss_pred hhhhhhccccchHHHHHHHhh-------hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEee-eEEE
Q psy14927 795 QVVLNTLGNCAAVQANYHLAT-------KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNG-HGKI 866 (1074)
Q Consensus 795 ~~VviiGgG~AGl~aA~~la~-------~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g-~v~~ 866 (1074)
++|||||||..|+.+|..+.+ +++..... ..++... .. +... ...||+|+.+ .++.
T Consensus 669 KrVVVIGGGnVAmD~Ar~a~RlgGakeVTLVyRr~~-------~~MPA~~----eE----le~A-leeGVe~~~~~~p~~ 732 (1019)
T PRK09853 669 KHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTK-------QEMPAWR----EE----YEEA-LEDGVEFKELLNPES 732 (1019)
T ss_pred CEEEEECCChHHHHHHHHHHhcCCCceEEEEEccCc-------ccccccH----HH----HHHH-HHcCCEEEeCCceEE
Confidence 349999999999999988776 11111110 0111111 11 1111 2359998877 3444
Q ss_pred ecC-CeEEE---------------EeCCCCeeEEEcCeEEEccCCCCC
Q psy14927 867 TGP-NTVTV---------------IKSDGSTEEVKTKNILIATGSEVT 898 (1074)
Q Consensus 867 id~-~~~~v---------------~~~~G~~~~i~~d~lIIATG~~p~ 898 (1074)
++. +.+.+ ....|+..++.+|.||+|+|..|.
T Consensus 733 I~~dG~l~~~~~~lg~~d~~Gr~~~v~tg~~~~I~aD~VIvAIG~~Pn 780 (1019)
T PRK09853 733 FDADGTLTCRVMKLGEPDESGRRRPVETGETVTLEADTVITAIGEQVD 780 (1019)
T ss_pred EEcCCcEEEEEEEeecccCCCceEEeeCCCeEEEEeCEEEECCCCcCC
Confidence 431 11111 111233468999999999999873
No 441
>PF12931 Sec16_C: Sec23-binding domain of Sec16; PDB: 3MZK_C.
Probab=91.50 E-value=2.1 Score=47.69 Aligned_cols=118 Identities=13% Similarity=0.035 Sum_probs=78.0
Q ss_pred HHHHHhhCHHHHHHHHHHcCCHHHHHHHHHhcCCcHHHHHHHHHHHhc---CCH------HHHHHHHHHcCCHHHHHHH-
Q psy14927 645 KYYEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAAYHLARQYENS---GQF------DEAIHFYSVAGSCGNAVRL- 714 (1074)
Q Consensus 645 ~~y~~ag~~~~ai~~~~~~~~~~~a~~v~~~~~~~~~~~~~A~~~~~~---g~~------~~A~~~~~kag~~~~Av~m- 714 (1074)
.-++..|+.++|+++....++|..|+=++...++..-...+-+|+... |+- .-..-+-+-+|..+++|+-
T Consensus 3 ~~~Ll~G~~~~Av~~al~~~~wa~ALlLAs~~g~e~~~~v~~~y~~~~~~~~~~~~~~~~~L~~l~~v~~g~~~~~v~~l 82 (284)
T PF12931_consen 3 QQLLLVGNREEAVELALDNGLWAHALLLASSLGPELWKKVVQEYFRREFSAGSPSSKITHLLRTLYQVFSGNSPEAVDEL 82 (284)
T ss_dssp HHHHHTT-HHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHH--------THHHHHHHHHHHHHTTT-HHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHCCChHHHHHHHHhcCHHHHHHHHHHHHHHhccCCCCcchhhHHHHHHHHHHcCCcHHHHHHh
Confidence 457889999999999999999999999998777666666666777666 332 1233344567888877743
Q ss_pred --------------hccHHHHHHHHHHhCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHhCC
Q psy14927 715 --------------CGQLDAVESIASELNVQSDQDLILKCASYFARREHHDRAVQMYAIARR 762 (1074)
Q Consensus 715 --------------a~~w~~a~~~A~~~~~~~~~~~~~~~a~~~~~~~~~~~Ai~~y~~ag~ 762 (1074)
.++|.+..-+.=.+.++.....+..+|..|...|+...|--||.-+|.
T Consensus 83 ~~~~~~~~~~~~~~~~~Wre~lA~il~N~~~~~~~~l~~LGd~L~~~g~~~aA~iCYllag~ 144 (284)
T PF12931_consen 83 VPNSAAPPLEGEWDLDNWRETLAIILSNRTPEDSQALCALGDRLWQRGRVEAAHICYLLAGN 144 (284)
T ss_dssp HH-----HHHHHHHHHSHHHHHHHHHHTS---SS-TT--HHHHHHHTT-HHHHHHHHHHTT-
T ss_pred ccccccccccccchhcCHHHHHHHHHhCCCcccHHHHHHHHHHHHhCCCcchhHHHHhHcCC
Confidence 247999988777776665556778899999999998888888876654
No 442
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=91.47 E-value=0.35 Score=61.80 Aligned_cols=88 Identities=17% Similarity=0.122 Sum_probs=51.4
Q ss_pred hhhhhhccccchHHHHHHHhh------hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEeee-EEEe
Q psy14927 795 QVVLNTLGNCAAVQANYHLAT------KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGH-GKIT 867 (1074)
Q Consensus 795 ~~VviiGgG~AGl~aA~~la~------~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~-v~~i 867 (1074)
++|||||||+.|+.+|..+.+ +++...+. ..++... . ....+...||+|++++ ++.+
T Consensus 571 k~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~~-------~~~~~~~----~-----e~~~~~~~GV~i~~~~~~~~i 634 (752)
T PRK12778 571 KKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRSE-------EEMPARL----E-----EVKHAKEEGIEFLTLHNPIEY 634 (752)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCc-------ccCCCCH----H-----HHHHHHHcCCEEEecCcceEE
Confidence 459999999999999999987 22222111 0011111 1 1123566799998873 3333
Q ss_pred c--C-CeE-EEEe---------C---------CCCeeEEEcCeEEEccCCCCC
Q psy14927 868 G--P-NTV-TVIK---------S---------DGSTEEVKTKNILIATGSEVT 898 (1074)
Q Consensus 868 d--~-~~~-~v~~---------~---------~G~~~~i~~d~lIIATG~~p~ 898 (1074)
. . ..+ .|.+ . .|+..++.+|.||+|+|..|.
T Consensus 635 ~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~A~G~~p~ 687 (752)
T PRK12778 635 LADEKGWVKQVVLQKMELGEPDASGRRRPVAIPGSTFTVDVDLVIVSVGVSPN 687 (752)
T ss_pred EECCCCEEEEEEEEEEEecCcCCCCCCCceecCCCeEEEECCEEEECcCCCCC
Confidence 2 1 111 1111 1 133357999999999999874
No 443
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=91.34 E-value=2.1 Score=45.02 Aligned_cols=33 Identities=18% Similarity=0.170 Sum_probs=28.7
Q ss_pred hcCChHHHHHHHHHHHhcCChHHHHHHHHHhCC
Q psy14927 101 ASGDTAAAYHLARQYENSGQFDEAIHFYSVAGS 133 (1074)
Q Consensus 101 ~~~~~~~~~~la~~~~~~g~~~~Ai~~y~~a~~ 133 (1074)
++++..+...+|+.|...|++++|++.|.++-+
T Consensus 69 ~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~ 101 (198)
T PRK10370 69 NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQ 101 (198)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 567889999999999999999999999876544
No 444
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=91.32 E-value=0.3 Score=63.00 Aligned_cols=88 Identities=15% Similarity=0.137 Sum_probs=50.2
Q ss_pred hhhhhhccccchHHHHHHHhh-------hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEeee-EEE
Q psy14927 795 QVVLNTLGNCAAVQANYHLAT-------KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGH-GKI 866 (1074)
Q Consensus 795 ~~VviiGgG~AGl~aA~~la~-------~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~-v~~ 866 (1074)
++|||||||..|+.+|..+.+ +++..... ..++... .. +.. ....||+|+.+. ++.
T Consensus 667 K~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~~-------~~Mpa~~----eE----l~~-aleeGVe~~~~~~p~~ 730 (1012)
T TIGR03315 667 KHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTK-------RYMPASR----EE----LEE-ALEDGVDFKELLSPES 730 (1012)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCceEEEEEccCc-------cccccCH----HH----HHH-HHHcCCEEEeCCceEE
Confidence 349999999999999988776 11111110 0011111 11 112 224689988763 344
Q ss_pred ecCCeEEE---------------EeCCCCeeEEEcCeEEEccCCCCC
Q psy14927 867 TGPNTVTV---------------IKSDGSTEEVKTKNILIATGSEVT 898 (1074)
Q Consensus 867 id~~~~~v---------------~~~~G~~~~i~~d~lIIATG~~p~ 898 (1074)
+..+.+++ .+.+|+..++.+|.||+|+|..|.
T Consensus 731 I~~g~l~v~~~~l~~~d~sGr~~~v~~Gee~~I~aD~VIvAiG~~Pn 777 (1012)
T TIGR03315 731 FEDGTLTCEVMKLGEPDASGRRRPVGTGETVDLPADTVIAAVGEQVD 777 (1012)
T ss_pred EECCeEEEEEEEeecccCCCceeeecCCCeEEEEeCEEEEecCCcCC
Confidence 43332222 122454567999999999999873
No 445
>KOG0548|consensus
Probab=91.30 E-value=6.4 Score=46.22 Aligned_cols=274 Identities=16% Similarity=0.088 Sum_probs=152.6
Q ss_pred HHHHHHHHhccCHHHHHHHHHHhhCh------hhhhhH--hhccCCHHHHHHHHHhc----CCh-HHHHHHHHHHHhcCC
Q psy14927 54 KWWAQYIESTEDMDLAMKYYEEARDY------LSMVRV--LCFLQDFSRAAELANAS----GDT-AAAYHLARQYENSGQ 120 (1074)
Q Consensus 54 ~~~a~~~e~~~~~~~A~~~y~~a~d~------~~~vr~--l~~~~~~~~a~~i~~~~----~~~-~~~~~la~~~~~~g~ 120 (1074)
+.-+..+.+.|+|++|..+|..|=.. ...=|. |..+|++++|.+=+.++ .+. -+.++.|.-+.-.|+
T Consensus 6 k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~ 85 (539)
T KOG0548|consen 6 KEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGD 85 (539)
T ss_pred HHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhccc
Confidence 34466788999999999999987543 222333 77789998887766543 233 367789988999999
Q ss_pred hHHHHHHHHHhCChHHHHHHHHHhCchHHHHHHh----hhcCchh------------HHH---HHHHHcc-CChhHHHHH
Q psy14927 121 FDEAIHFYSVAGSCGNAVRLCKEQALDDQLWNLA----LSAGPSE------------QIE---AATYLET-IEPDKAVLL 180 (1074)
Q Consensus 121 ~~~Ai~~y~~a~~~~~A~~la~~~~~~~~~~~l~----~~~~~~~------------~~~---~A~~~e~-~~~~~A~~l 180 (1074)
|++|+.-|.++-..+---... ..|+.+...... ....|.. ++. .-..++. .+....+++
T Consensus 86 ~~eA~~ay~~GL~~d~~n~~L-~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~ 164 (539)
T KOG0548|consen 86 YEEAILAYSEGLEKDPSNKQL-KTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKL 164 (539)
T ss_pred HHHHHHHHHHHhhcCCchHHH-HHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhc
Confidence 999999998865443211111 112222110000 0011111 111 1112233 234556777
Q ss_pred HHHhCChHHHHHHHHhhccC---CcchHHHHHH-----HHHH---hcCCChhhHHHhhhhcchHHHHHHHHHHHhcCCCC
Q psy14927 181 YHKAGALHKALDLAFKLTLS---NSGLVFQIKA-----MKCL---LKSGDTNKIIFFAGVSRMKEIYVMAANYLQSSDWK 249 (1074)
Q Consensus 181 y~kaG~~~kAl~l~~~~~~~---~~~~~~~~~a-----~k~l---~~~~~~~~~i~~a~~~r~~~l~~~aa~yl~~~~~~ 249 (1074)
|..--+..+|+-.+....+. ..|.... .. -++. -..+|..........+++ +..++|=....
T Consensus 165 ~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~-~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~---ek~lgnaaykk--- 237 (539)
T KOG0548|consen 165 YLNDPRLMKADGQLKGVDELLFYASGIEIL-ASMAEPCKQEHNGFPIIEDNTEERRVKEKAHK---EKELGNAAYKK--- 237 (539)
T ss_pred ccccHHHHHHHHHHhcCccccccccccccC-CCCCCcccccCCCCCccchhHHHHHHHHhhhH---HHHHHHHHHHh---
Confidence 77766667776666543210 0000000 00 0000 001111111111111222 33455555554
Q ss_pred CChhHHHHHHHHHHccCCHHHHHHHHHHHHhHHHHhhcCHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhh
Q psy14927 250 SQPELLKSIISFYSKGKAPHLLANFYVSCAQVEIDEFGNYEKGLGALNEAKRCLLKHNDSMYETLKSSVVEKLAEVEIDE 329 (1074)
Q Consensus 250 ~~~~~~~~i~~~Y~k~~~~~~aa~~~~~~a~~ei~e~~~y~~a~~~l~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (1074)
+++-..+++|.++-..+....++...+-.+ =|-|.|......-+.|+..-.+...... |-......+.+.|++
T Consensus 238 ---k~f~~a~q~y~~a~el~~~it~~~n~aA~~-~e~~~~~~c~~~c~~a~E~gre~rad~k--lIak~~~r~g~a~~k- 310 (539)
T KOG0548|consen 238 ---KDFETAIQHYAKALELATDITYLNNIAAVY-LERGKYAECIELCEKAVEVGRELRADYK--LIAKALARLGNAYTK- 310 (539)
T ss_pred ---hhHHHHHHHHHHHHhHhhhhHHHHHHHHHH-HhccHHHHhhcchHHHHHHhHHHHHHHH--HHHHHHHHhhhhhhh-
Confidence 677778888888888888888888888888 7788888887777776655554332222 222222235678888
Q ss_pred cCChHHHhhHHHH
Q psy14927 330 FGNYEKGLGALNE 342 (1074)
Q Consensus 330 ~~~~~~a~~~~~~ 342 (1074)
+++++.|+..|++
T Consensus 311 ~~~~~~ai~~~~k 323 (539)
T KOG0548|consen 311 REDYEGAIKYYQK 323 (539)
T ss_pred HHhHHHHHHHHHH
Confidence 7999999999988
No 446
>KOG3060|consensus
Probab=91.02 E-value=2.5 Score=45.04 Aligned_cols=82 Identities=24% Similarity=0.227 Sum_probs=62.6
Q ss_pred CCChHHHHHHHHHHHhccCHHHHHHHHHHh--hCh------hhhhhHhhccCCHHHHHHHHHh-----cCChHHHHHHHH
Q psy14927 47 SKDPVLLKWWAQYIESTEDMDLAMKYYEEA--RDY------LSMVRVLCFLQDFSRAAELANA-----SGDTAAAYHLAR 113 (1074)
Q Consensus 47 ~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a--~d~------~~~vr~l~~~~~~~~a~~i~~~-----~~~~~~~~~la~ 113 (1074)
+.|+++.+..|-.+|+.|+|++|.++|.+- .|- ...+-++..+|..-+|.+-..+ .+|.++...+|.
T Consensus 83 p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLae 162 (289)
T KOG3060|consen 83 PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAE 162 (289)
T ss_pred CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 788999999999999999999999999883 222 1233346667777677666553 468888888888
Q ss_pred HHHhcCChHHHHHHH
Q psy14927 114 QYENSGQFDEAIHFY 128 (1074)
Q Consensus 114 ~~~~~g~~~~Ai~~y 128 (1074)
+|...|+|++|+-.|
T Consensus 163 iY~~~~~f~kA~fCl 177 (289)
T KOG3060|consen 163 IYLSEGDFEKAAFCL 177 (289)
T ss_pred HHHhHhHHHHHHHHH
Confidence 888888888887543
No 447
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=90.99 E-value=6.3 Score=50.27 Aligned_cols=119 Identities=12% Similarity=0.064 Sum_probs=68.6
Q ss_pred CCChHHHHHHHHHHHhccCHHHHHHHHHHhhChhhhhhHhhccCCHHHHHHHHH----hcCChHHHHHHHHHHHhcCChH
Q psy14927 47 SKDPVLLKWWAQYIESTEDMDLAMKYYEEARDYLSMVRVLCFLQDFSRAAELAN----ASGDTAAAYHLARQYENSGQFD 122 (1074)
Q Consensus 47 ~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~~~~vr~l~~~~~~~~a~~i~~----~~~~~~~~~~la~~~~~~g~~~ 122 (1074)
+++..++-..|-.+.+.+++..|... .++.+.....+|.-...++. -..+..+.+.+|..|.+.|+.+
T Consensus 62 P~~i~~yy~~G~l~~q~~~~~~~~lv--------~~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ 133 (906)
T PRK14720 62 KKSISALYISGILSLSRRPLNDSNLL--------NLIDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENK 133 (906)
T ss_pred CcceehHHHHHHHHHhhcchhhhhhh--------hhhhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChH
Confidence 34455555556667777776555544 22222333434433333333 2345568999999999999999
Q ss_pred HHHHHHHHhCChHHHHHHHHHhCchHHHHHHhhhcCchhHHHHHHHHccCChhHHHHHHH-------HhCChHHHHHH
Q psy14927 123 EAIHFYSVAGSCGNAVRLCKEQALDDQLWNLALSAGPSEQIEAATYLETIEPDKAVLLYH-------KAGALHKALDL 193 (1074)
Q Consensus 123 ~Ai~~y~~a~~~~~A~~la~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~~~~~~A~~ly~-------kaG~~~kAl~l 193 (1074)
+|+..|.++=.++ ...+..+..+|.+|+..+.++|..+|. ...++.++.++
T Consensus 134 ka~~~yer~L~~D--------------------~~n~~aLNn~AY~~ae~dL~KA~~m~~KAV~~~i~~kq~~~~~e~ 191 (906)
T PRK14720 134 KLKGVWERLVKAD--------------------RDNPEIVKKLATSYEEEDKEKAITYLKKAIYRFIKKKQYVGIEEI 191 (906)
T ss_pred HHHHHHHHHHhcC--------------------cccHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcchHHHHH
Confidence 9999876655544 122234445666665555555555544 44455555443
No 448
>PRK07208 hypothetical protein; Provisional
Probab=90.94 E-value=0.077 Score=64.05 Aligned_cols=60 Identities=22% Similarity=0.301 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeE-EEEEeeccCCCCceEEEcCEEEEccCC
Q psy14927 948 GEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNI-TVTIENVKDPTKKEELSCDALLVCVGR 1008 (1074)
Q Consensus 948 ~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~-~v~~~~~~~~g~~~~i~~D~vi~a~G~ 1008 (1074)
..+.+.+.+.+.+.|++|++++.|++|..++++. .+...+.. +|+..++.+|.||++++.
T Consensus 218 ~~l~~~L~~~l~~~g~~i~~~~~V~~I~~~~~~~v~~~~~~~~-~g~~~~~~ad~VI~a~p~ 278 (479)
T PRK07208 218 GQLWETAAEKLEALGGKVVLNAKVVGLHHDGDGRIAVVVVNDT-DGTEETVTADQVISSMPL 278 (479)
T ss_pred chHHHHHHHHHHHcCCEEEeCCEEEEEEEcCCcEEEEEEEEcC-CCCEEEEEcCEEEECCCH
Confidence 4566777788888999999999999998876653 22222211 233356899999998764
No 449
>KOG2415|consensus
Probab=90.87 E-value=0.079 Score=59.41 Aligned_cols=34 Identities=18% Similarity=0.089 Sum_probs=28.1
Q ss_pred hhhhhhccccchHHHHHHHhh-----------hhhhhcccccccc
Q psy14927 795 QVVLNTLGNCAAVQANYHLAT-----------KLFTQAGDKGVKL 828 (1074)
Q Consensus 795 ~~VviiGgG~AGl~aA~~la~-----------~l~e~~~~~g~~~ 828 (1074)
-+|+|+|||||||+||+.|.+ .++|+....|+..
T Consensus 77 ~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~Gght 121 (621)
T KOG2415|consen 77 VDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHT 121 (621)
T ss_pred ccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCce
Confidence 459999999999999999988 4677777777654
No 450
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=90.83 E-value=3 Score=36.04 Aligned_cols=73 Identities=26% Similarity=0.328 Sum_probs=54.3
Q ss_pred HHHHHHHHHHhHHHHhhcCHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhhcCChHHHhhHHHHHHHH
Q psy14927 270 LLANFYVSCAQVEIDEFGNYEKGLGALNEAKRCLLKHNDSMYETLKSSVVEKLAEVEIDEFGNYEKGLGALNEAKRC 346 (1074)
Q Consensus 270 ~aa~~~~~~a~~ei~e~~~y~~a~~~l~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 346 (1074)
..+..|..++..- .+.|+|++|...+.+|++..+..+...+.- .....-+..++.. .|+++.|..++.++-..
T Consensus 3 ~~a~~~~~la~~~-~~~~~~~~A~~~~~~al~~~~~~~~~~~~~--a~~~~~lg~~~~~-~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 3 DTANAYNNLARVY-RELGRYDEALDYYEKALDIEEQLGDDHPDT--ANTLNNLGECYYR-LGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHH-HHTT-HHHHHHHHHHHHHHHHHTTTHHHHH--HHHHHHHHHHHHH-TTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHHCCCCHHH--HHHHHHHHHHHHH-cCCHHHHHHHHHHHHhh
Confidence 4577788888887 899999999999999999966666543311 2222245677777 79999999999988654
No 451
>KOG2311|consensus
Probab=90.71 E-value=0.21 Score=57.14 Aligned_cols=36 Identities=17% Similarity=0.217 Sum_probs=26.5
Q ss_pred CCCC-CCCCEEEecccCCCCCcHHHHHHHHHHHHHHhh
Q psy14927 1035 RFQT-VIPNIFAIGDCIHGPMLAHKAEDEGIVCVEGIA 1071 (1074)
Q Consensus 1035 ~~~t-s~~~IyAiGD~~~~~~~~~~A~~~G~~aA~~I~ 1071 (1074)
+++| .++|+|.+|-+.+.. --..|.+||-+|+-|..
T Consensus 382 sLeTkkV~GLF~AGQINGTT-GYEEAAAQGIiAGiNA~ 418 (679)
T KOG2311|consen 382 SLETKKVQGLFFAGQINGTT-GYEEAAAQGIIAGINAS 418 (679)
T ss_pred hhhhhhccceEEeeeecCcc-chHHHHhhhhHhhhhhh
Confidence 4556 689999999876643 34568888888887753
No 452
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=90.70 E-value=0.082 Score=61.86 Aligned_cols=33 Identities=27% Similarity=0.289 Sum_probs=30.8
Q ss_pred hhhhhccccchHHHHHHHhh-----hhhhhcccccccc
Q psy14927 796 VVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKL 828 (1074)
Q Consensus 796 ~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~ 828 (1074)
+|+|+|||.|||+||++|+. |++|..+..||..
T Consensus 2 rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk~ 39 (485)
T COG3349 2 RVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGKV 39 (485)
T ss_pred eEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCcee
Confidence 59999999999999999999 8999999999865
No 453
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=90.58 E-value=0.43 Score=57.56 Aligned_cols=22 Identities=9% Similarity=-0.100 Sum_probs=18.2
Q ss_pred chhhhhhccccchHHHHHHHhh
Q psy14927 794 RQVVLNTLGNCAAVQANYHLAT 815 (1074)
Q Consensus 794 k~~VviiGgG~AGl~aA~~la~ 815 (1074)
.++|+|||||..|+.+|..+.+
T Consensus 283 gk~VvViGgG~~g~d~a~~a~~ 304 (485)
T TIGR01317 283 GKKVVVIGGGDTGADCVGTSLR 304 (485)
T ss_pred CCEEEEECCcHHHHHHHHHHHH
Confidence 3459999999999998777665
No 454
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=90.58 E-value=1.7 Score=50.37 Aligned_cols=99 Identities=21% Similarity=0.219 Sum_probs=56.1
Q ss_pred hhhcCCHHHHHHHHHHcCcccchhhhHhhhcHHHHHHHhhcCCChHHHHHHHHHHHhccCHHHHHHHHHHhhC-------
Q psy14927 6 TMKNGDIDRAIRMFEKAETHQQHVPRMLLENTDKLEKYIIQSKDPVLLKWWAQYIESTEDMDLAMKYYEEARD------- 78 (1074)
Q Consensus 6 ~~~~g~~~eA~~~Ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d------- 78 (1074)
+...+++++|+.++++....+.++ ...+|+.+...++..+|.+...++=.
T Consensus 179 l~~t~~~~~ai~lle~L~~~~pev-----------------------~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~ 235 (395)
T PF09295_consen 179 LSLTQRYDEAIELLEKLRERDPEV-----------------------AVLLARVYLLMNEEVEAIRLLNEALKENPQDSE 235 (395)
T ss_pred HhhcccHHHHHHHHHHHHhcCCcH-----------------------HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHH
Confidence 344577888888888877666444 33333333333333333333322211
Q ss_pred -hhhhhhHhhccCCHHHHHHHHHh-----cCChHHHHHHHHHHHhcCChHHHHHH
Q psy14927 79 -YLSMVRVLCFLQDFSRAAELANA-----SGDTAAAYHLARQYENSGQFDEAIHF 127 (1074)
Q Consensus 79 -~~~~vr~l~~~~~~~~a~~i~~~-----~~~~~~~~~la~~~~~~g~~~~Ai~~ 127 (1074)
..-.+++|...++++.|.++++. +.+....+.||+.|...|++++|+-.
T Consensus 236 LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALla 290 (395)
T PF09295_consen 236 LLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLA 290 (395)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHH
Confidence 11233334445555555555552 34667888999999999999999843
No 455
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=90.54 E-value=0.38 Score=35.15 Aligned_cols=24 Identities=33% Similarity=0.726 Sum_probs=20.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHH
Q psy14927 107 AAYHLARQYENSGQFDEAIHFYSV 130 (1074)
Q Consensus 107 ~~~~la~~~~~~g~~~~Ai~~y~~ 130 (1074)
+...||+.|.++|++++||++|.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 356899999999999999999887
No 456
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=90.49 E-value=0.54 Score=39.21 Aligned_cols=46 Identities=28% Similarity=0.437 Sum_probs=31.7
Q ss_pred hhccCCHHHHHHHHH-----hcCChHHHHHHHHHHHhcCChHHHHHHHHHh
Q psy14927 86 LCFLQDFSRAAELAN-----ASGDTAAAYHLARQYENSGQFDEAIHFYSVA 131 (1074)
Q Consensus 86 l~~~~~~~~a~~i~~-----~~~~~~~~~~la~~~~~~g~~~~Ai~~y~~a 131 (1074)
+...|++++|.++.+ .+++..+.+.+|+.+..+|++++|+.+|.++
T Consensus 7 ~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 57 (65)
T PF13432_consen 7 LYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERA 57 (65)
T ss_dssp HHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 334444444444433 2457788999999999999999999998765
No 457
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=90.35 E-value=0.36 Score=40.80 Aligned_cols=52 Identities=23% Similarity=0.246 Sum_probs=43.8
Q ss_pred HhhhcCCHHHHHHHHHHcCcccchhhhHhhhcHHHHHHHhhcCCChHHHHHHHHHHHhcc-CHHHHHHHHHHh
Q psy14927 5 ETMKNGDIDRAIRMFEKAETHQQHVPRMLLENTDKLEKYIIQSKDPVLLKWWAQYIESTE-DMDLAMKYYEEA 76 (1074)
Q Consensus 5 ~~~~~g~~~eA~~~Ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~e~~~-~~~~A~~~y~~a 76 (1074)
.+...|++++|+..|+++-..+ ++++.+|-++|..+...| ++++|.++|.++
T Consensus 12 ~~~~~~~~~~A~~~~~~ai~~~--------------------p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~a 64 (69)
T PF13414_consen 12 IYFQQGDYEEAIEYFEKAIELD--------------------PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKA 64 (69)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHS--------------------TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHcC--------------------CCCHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 4667889999999998887444 455789999999999999 799999999876
No 458
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=90.32 E-value=1.4 Score=48.47 Aligned_cols=91 Identities=18% Similarity=0.180 Sum_probs=0.0
Q ss_pred hhhcCCHHHHHHHHHHcCcccchhhhHhhhcHHHHHHHhhcCCChHHHHHHHHHHHhccCHHHHHHHHHHhhChhhhhhH
Q psy14927 6 TMKNGDIDRAIRMFEKAETHQQHVPRMLLENTDKLEKYIIQSKDPVLLKWWAQYIESTEDMDLAMKYYEEARDYLSMVRV 85 (1074)
Q Consensus 6 ~~~~g~~~eA~~~Ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~~~~vr~ 85 (1074)
+...|+|++|+..|++.-.....-+.. +..+-|+|+.+...|+++.|...| ..++..
T Consensus 153 ~~~~~~y~~Ai~af~~fl~~yP~s~~a-----------------~~A~y~LG~~y~~~g~~~~A~~~f------~~vv~~ 209 (263)
T PRK10803 153 VQDKSRQDDAIVAFQNFVKKYPDSTYQ-----------------PNANYWLGQLNYNKGKKDDAAYYF------ASVVKN 209 (263)
T ss_pred HHhcCCHHHHHHHHHHHHHHCcCCcch-----------------HHHHHHHHHHHHHcCCHHHHHHHH------HHHHHH
Q ss_pred hhccCCHHHHHHHHHhcCChHHHHHHHHHHHhcCChHHHHHHHHHh
Q psy14927 86 LCFLQDFSRAAELANASGDTAAAYHLARQYENSGQFDEAIHFYSVA 131 (1074)
Q Consensus 86 l~~~~~~~~a~~i~~~~~~~~~~~~la~~~~~~g~~~~Ai~~y~~a 131 (1074)
+-..... ..+.+.+|..+.+.|++++|+++|...
T Consensus 210 yP~s~~~------------~dAl~klg~~~~~~g~~~~A~~~~~~v 243 (263)
T PRK10803 210 YPKSPKA------------ADAMFKVGVIMQDKGDTAKAKAVYQQV 243 (263)
T ss_pred CCCCcch------------hHHHHHHHHHHHHcCCHHHHHHHHHHH
No 459
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=90.30 E-value=0.81 Score=53.66 Aligned_cols=81 Identities=21% Similarity=0.300 Sum_probs=52.3
Q ss_pred hhHHhhcCCcEEEEecCCccCCCCC--CHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCe-EEEEEeeccCCCCceEEE
Q psy14927 922 GSVWGRLGAEVTAIEFMNAIGGMGI--DGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDN-ITVTIENVKDPTKKEELS 998 (1074)
Q Consensus 922 A~~l~~~G~~Vtlv~~~~~~~~~~~--~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~-~~v~~~~~~~~g~~~~i~ 998 (1074)
-.++.+.|.... ++.+.++. |.. ..++.+.+++.+++.||+++++++|..+..++++ ..|.+.+ ..++.
T Consensus 83 ~~ff~~~Gv~~~-~~~~gr~f-P~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~~------~~~~~ 154 (409)
T PF03486_consen 83 IAFFEELGVPTK-IEEDGRVF-PKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTKN------GGEYE 154 (409)
T ss_dssp HHHHHHTT--EE-E-STTEEE-ETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEETT------TEEEE
T ss_pred HHHHHhcCCeEE-EcCCCEEC-CCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeeccC------ccccc
Confidence 446677886533 44566666 443 3677788899999999999999999999987666 6666522 46899
Q ss_pred cCEEEEccCCcc
Q psy14927 999 CDALLVCVGRRP 1010 (1074)
Q Consensus 999 ~D~vi~a~G~~p 1010 (1074)
+|.||+|+|-..
T Consensus 155 a~~vILAtGG~S 166 (409)
T PF03486_consen 155 ADAVILATGGKS 166 (409)
T ss_dssp ESEEEE----SS
T ss_pred CCEEEEecCCCC
Confidence 999999999764
No 460
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=90.29 E-value=2.1 Score=41.33 Aligned_cols=81 Identities=16% Similarity=0.203 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHhhC--------HHHHHHHHHHcCCHHHHHHHHH----hc-CCcHHHHHHHHHHHh
Q psy14927 625 VLLKWWAQYIESTEDMDLAMKYYEEARD--------YLSMVRVLCFLQDFSRAAELAN----AS-GDTAAAYHLARQYEN 691 (1074)
Q Consensus 625 ~l~~~~a~~~e~~~~~~~A~~~y~~ag~--------~~~ai~~~~~~~~~~~a~~v~~----~~-~~~~~~~~~A~~~~~ 691 (1074)
......|...-..|++++|...|.++-. +.....+|...+++++|....+ .. .+......+|..+..
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 4667788888888899999999877622 2344555788889998887663 22 223444478888888
Q ss_pred cCCHHHHHHHHHHc
Q psy14927 692 SGQFDEAIHFYSVA 705 (1074)
Q Consensus 692 ~g~~~~A~~~~~ka 705 (1074)
.|+++.|+.+|.++
T Consensus 98 ~g~~~~A~~~~~~a 111 (135)
T TIGR02552 98 LGEPESALKALDLA 111 (135)
T ss_pred cCCHHHHHHHHHHH
Confidence 89988888887543
No 461
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=90.28 E-value=3.8 Score=44.81 Aligned_cols=123 Identities=16% Similarity=0.149 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHhCCCEEEeCceEEEEEecCC---eEEEEEeec----cC-CCCceEEEcCEEEEccCCccc-CCccCcc
Q psy14927 948 GEVAKQFQRILGKQGMQFKLGTKVTGASKSGD---NITVTIENV----KD-PTKKEELSCDALLVCVGRRPY-THNLGLE 1018 (1074)
Q Consensus 948 ~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~---~~~v~~~~~----~~-~g~~~~i~~D~vi~a~G~~p~-~~~l~l~ 1018 (1074)
+++...+.+...+.||+++.++.+..+..+++ ...|.+... .+ .....++.++.||.|+|.... ..++ .+
T Consensus 100 ~el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~a~v~~~l-~~ 178 (254)
T TIGR00292 100 AEFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHDAEIVAVC-AK 178 (254)
T ss_pred HHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCCchHHHHH-HH
Confidence 45666777777889999999999999876544 223333210 00 012468999999999996532 2222 22
Q ss_pred ccCcccCCC---C--C--------eeeCCCCCCCCCCEEEecccCC----CCCc--H-HHHHHHHHHHHHHhhC
Q psy14927 1019 EIGIEKDEK---G--R--------VPVNSRFQTVIPNIFAIGDCIH----GPML--A-HKAEDEGIVCVEGIAG 1072 (1074)
Q Consensus 1019 ~~gl~ld~~---G--~--------I~Vd~~~~ts~~~IyAiGD~~~----~~~~--~-~~A~~~G~~aA~~I~~ 1072 (1074)
..++..... | . ..|+.+ +--+||+|++|=.++ .|.. + -.=...|+.||.-|+.
T Consensus 179 ~~~~~~~~~~~~g~~~~~~~~~e~~~~~~t-~~~~~g~~~~gm~~~~~~~~~rmgp~fg~m~~sg~~~a~~~~~ 251 (254)
T TIGR00292 179 KIVLEDQVPKLGGEKSMWAEVAEVAIHENT-REVVPNLYVAGMAVAAVHGLPRMGPIFGGMLLSGKHVAEQILE 251 (254)
T ss_pred HcCcccCCcccCCchhhhhhhhHHHHHhcc-CcccCCEEEechhhhhhcCCCCcCchHHHHHHhhHHHHHHHHH
Confidence 222221110 0 0 111111 124899999998765 1221 1 1224678888887763
No 462
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=90.13 E-value=0.73 Score=57.90 Aligned_cols=88 Identities=14% Similarity=0.035 Sum_probs=51.1
Q ss_pred hhhhhhccccchHHHHHHHhh------hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEee-eEEEe
Q psy14927 795 QVVLNTLGNCAAVQANYHLAT------KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNG-HGKIT 867 (1074)
Q Consensus 795 ~~VviiGgG~AGl~aA~~la~------~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g-~v~~i 867 (1074)
++|||||||..|+.+|..+.+ +++...+.. . ++... ...+.+...||+|+++ .++.+
T Consensus 469 k~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~~~----~---~~~~~---------~e~~~~~~~Gv~~~~~~~~~~i 532 (654)
T PRK12769 469 LNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRDEA----N---MPGSK---------KEVKNAREEGANFEFNVQPVAL 532 (654)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCCeEEEeEecCCC----C---CCCCH---------HHHHHHHHcCCeEEeccCcEEE
Confidence 349999999999999887766 122111110 0 11111 1223466779999988 34444
Q ss_pred c--C-CeE-EEEe---------C---------CCCeeEEEcCeEEEccCCCCC
Q psy14927 868 G--P-NTV-TVIK---------S---------DGSTEEVKTKNILIATGSEVT 898 (1074)
Q Consensus 868 d--~-~~~-~v~~---------~---------~G~~~~i~~d~lIIATG~~p~ 898 (1074)
. . +.+ .|.+ . .|+..++.+|.||+|+|..|.
T Consensus 533 ~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~AiG~~p~ 585 (654)
T PRK12769 533 ELNEQGHVCGIRFLRTRLGEPDAQGRRRPVPIPGSEFVMPADAVIMAFGFNPH 585 (654)
T ss_pred EECCCCeEEEEEEEEEEecCcCCCCCCcceeCCCceEEEECCEEEECccCCCC
Confidence 2 2 222 1211 1 133357999999999999875
No 463
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=90.12 E-value=0.93 Score=54.95 Aligned_cols=57 Identities=7% Similarity=0.101 Sum_probs=41.3
Q ss_pred HHHhCCCEEEeCceEEEEEecCC---e-EEEEEeeccCCCCceEEEcCEEEEccCCcccCCc
Q psy14927 957 ILGKQGMQFKLGTKVTGASKSGD---N-ITVTIENVKDPTKKEELSCDALLVCVGRRPYTHN 1014 (1074)
Q Consensus 957 ~l~~~gV~i~~~~~v~~i~~~~~---~-~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~ 1014 (1074)
.+...+++++.++.|.+|.-+++ . ..|.+.+.. +|+..++.++.||+|.|..-+..+
T Consensus 223 ~~~~~n~~l~~~a~v~~i~~d~~~~~~v~~v~~~d~~-~g~~~~v~A~~vVLAagaIetpRL 283 (544)
T TIGR02462 223 DAPSERFTLLTNHRCTRLVRNETNESEIEAALVRDLL-SGDRFEIKADVYVLACGAVHNPQI 283 (544)
T ss_pred hccCCCEEEEcCCEEEEEEeCCCCCceeEEEEEEECC-CCcEEEEECCEEEEccCchhhHHH
Confidence 33466699999999999986532 2 345566542 366778999999999997766554
No 464
>PLN02268 probable polyamine oxidase
Probab=90.12 E-value=0.097 Score=62.32 Aligned_cols=34 Identities=21% Similarity=0.244 Sum_probs=31.0
Q ss_pred hhhhhccccchHHHHHHHhh-----hhhhhccccccccc
Q psy14927 796 VVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLN 829 (1074)
Q Consensus 796 ~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~ 829 (1074)
+|+|||||.+||+||+.|.+ +++|+.++.||.+.
T Consensus 2 ~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GGri~ 40 (435)
T PLN02268 2 SVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGRVH 40 (435)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCceee
Confidence 49999999999999999997 79999999999764
No 465
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=90.11 E-value=1.1 Score=50.95 Aligned_cols=53 Identities=19% Similarity=0.252 Sum_probs=44.1
Q ss_pred hhhhhhHHHHhhhCCeEEEee-eEEEecCC--eEEEEeCCCCeeEEEcCeEEEccCCC
Q psy14927 842 KALTGGIAHLFKSNKVTQLNG-HGKITGPN--TVTVIKSDGSTEEVKTKNILIATGSE 896 (1074)
Q Consensus 842 ~~l~~~~~~~l~~~gV~~~~g-~v~~id~~--~~~v~~~~G~~~~i~~d~lIIATG~~ 896 (1074)
..+.+-+...+++.||+++++ +|..++.. .+.+.+++| .++.+|.||||||..
T Consensus 111 ~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~~g--~~i~~d~lilAtGG~ 166 (408)
T COG2081 111 SPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDTSSG--ETVKCDSLILATGGK 166 (408)
T ss_pred HHHHHHHHHHHHHcCcEEEecceEEeEEecCceEEEEcCCC--CEEEccEEEEecCCc
Confidence 567777888889999999999 57777654 688888998 589999999999954
No 466
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=90.02 E-value=0.79 Score=52.92 Aligned_cols=55 Identities=13% Similarity=0.094 Sum_probs=43.5
Q ss_pred hhhhhhHHHHhhhCCeEEEee-eEEEecCCeEEEEeCCCCeeEEEcCeEEEccCCCC
Q psy14927 842 KALTGGIAHLFKSNKVTQLNG-HGKITGPNTVTVIKSDGSTEEVKTKNILIATGSEV 897 (1074)
Q Consensus 842 ~~l~~~~~~~l~~~gV~~~~g-~v~~id~~~~~v~~~~G~~~~i~~d~lIIATG~~p 897 (1074)
..+.+-+...+++.||+++++ .|+.++...+.+.+.++. ..+.+|+||||||+.+
T Consensus 86 ~sVv~~L~~~l~~~gV~i~~~~~V~~i~~~~~~v~~~~~~-~~~~a~~vIlAtGG~s 141 (376)
T TIGR03862 86 APLLRAWLKRLAEQGVQFHTRHRWIGWQGGTLRFETPDGQ-STIEADAVVLALGGAS 141 (376)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCEEEEEeCCcEEEEECCCc-eEEecCEEEEcCCCcc
Confidence 667777888889999999999 688886555777765431 3699999999999965
No 467
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=89.88 E-value=1.2 Score=41.79 Aligned_cols=80 Identities=19% Similarity=0.139 Sum_probs=55.7
Q ss_pred HHhhhcCCHHHHHHHHHHcCcccchhhhHhhhcHHHHHHHhhcCCChHHHHHHHHHHHhccCHHHHHHHHHHhhC-----
Q psy14927 4 EETMKNGDIDRAIRMFEKAETHQQHVPRMLLENTDKLEKYIIQSKDPVLLKWWAQYIESTEDMDLAMKYYEEARD----- 78 (1074)
Q Consensus 4 ~~~~~~g~~~eA~~~Ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d----- 78 (1074)
..+.++|++++|+..|+++-.... .+...+..+.++|..+...|+++.|.++|..+-.
T Consensus 10 ~~~~~~~~~~~A~~~~~~~~~~~~-----------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 72 (119)
T TIGR02795 10 LLVLKAGDYADAIQAFQAFLKKYP-----------------KSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKS 72 (119)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCC-----------------CccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCC
Confidence 356778889999888887742210 0011256777889999999999999999987532
Q ss_pred ------hhhhhhHhhccCCHHHHHHHHH
Q psy14927 79 ------YLSMVRVLCFLQDFSRAAELAN 100 (1074)
Q Consensus 79 ------~~~~vr~l~~~~~~~~a~~i~~ 100 (1074)
+..+.+++..+|++++|.+..+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 100 (119)
T TIGR02795 73 PKAPDALLKLGMSLQELGDKEKAKATLQ 100 (119)
T ss_pred CcccHHHHHHHHHHHHhCChHHHHHHHH
Confidence 2345566777888888877665
No 468
>KOG1585|consensus
Probab=89.87 E-value=16 Score=38.89 Aligned_cols=152 Identities=16% Similarity=0.091 Sum_probs=95.3
Q ss_pred ChhHHHHHHHHhCChHHHHHHHHhhccCCcchHHHHHHHHHHhcCCChhhHHHhhhhcchHHHHHHHHHHHhcC-CCCCC
Q psy14927 173 EPDKAVLLYHKAGALHKALDLAFKLTLSNSGLVFQIKAMKCLLKSGDTNKIIFFAGVSRMKEIYVMAANYLQSS-DWKSQ 251 (1074)
Q Consensus 173 ~~~~A~~ly~kaG~~~kAl~l~~~~~~~~~~~~~~~~a~k~l~~~~~~~~~i~~a~~~r~~~l~~~aa~yl~~~-~~~~~ 251 (1074)
-|++|...|..|.+++||-+.+++. .++--....+ ..-..-|..|+-.++.+ -|..-
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA-------------~~~yEnnrsl---------fhAAKayEqaamLake~~klsEv 90 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKA-------------SKGYENNRSL---------FHAAKAYEQAAMLAKELSKLSEV 90 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHH-------------HHHHHhcccH---------HHHHHHHHHHHHHHHHHHHhHHH
Confidence 3788999999999999999977663 2221111111 11112245555555543 23444
Q ss_pred hhHHHHHHHHHHccCCHHHHHHHHHHHHhHHHHhhcCHHHHHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHHHHHhhc
Q psy14927 252 PELLKSIISFYSKGKAPHLLANFYVSCAQVEIDEFGNYEKGLGALNEAKRCLLKHND-SMYETLKSSVVEKLAEVEIDEF 330 (1074)
Q Consensus 252 ~~~~~~i~~~Y~k~~~~~~aa~~~~~~a~~ei~e~~~y~~a~~~l~~a~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 330 (1074)
...+.++..+|.--|..+.|+-..++.|.. =|.-+-+.|+.+++.++..+++.+. ....+ +--+..++||+ .
T Consensus 91 vdl~eKAs~lY~E~GspdtAAmaleKAak~--lenv~Pd~AlqlYqralavve~~dr~~ma~e----l~gk~sr~lVr-l 163 (308)
T KOG1585|consen 91 VDLYEKASELYVECGSPDTAAMALEKAAKA--LENVKPDDALQLYQRALAVVEEDDRDQMAFE----LYGKCSRVLVR-L 163 (308)
T ss_pred HHHHHHHHHHHHHhCCcchHHHHHHHHHHH--hhcCCHHHHHHHHHHHHHHHhccchHHHHHH----HHHHhhhHhhh-h
Confidence 566777788888889999999888888876 4788999999999999999987653 22222 33345677777 3
Q ss_pred CChHHHhh---HHHHHHHHHhhccCc
Q psy14927 331 GNYEKGLG---ALNEAKRCLLKHNDS 353 (1074)
Q Consensus 331 ~~~~~a~~---~~~~~~~~~~~~~~~ 353 (1074)
..++.|+. =..-+...+.-.|+.
T Consensus 164 ~kf~Eaa~a~lKe~~~~~~~~~y~~~ 189 (308)
T KOG1585|consen 164 EKFTEAATAFLKEGVAADKCDAYNSQ 189 (308)
T ss_pred HHhhHHHHHHHHhhhHHHHHhhcccH
Confidence 44444444 223334444444543
No 469
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=89.86 E-value=0.64 Score=55.84 Aligned_cols=88 Identities=16% Similarity=0.081 Sum_probs=51.9
Q ss_pred hhhhhhccccchHHHHHHHhh------hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEee-eEEEe
Q psy14927 795 QVVLNTLGNCAAVQANYHLAT------KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNG-HGKIT 867 (1074)
Q Consensus 795 ~~VviiGgG~AGl~aA~~la~------~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g-~v~~i 867 (1074)
++|+|||||..|+.+|..+.+ +++...+.. .++.. . . ....+...||+|+.+ .++.+
T Consensus 283 k~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~~~-------~~~~~-~---~-----e~~~~~~~GV~~~~~~~~~~i 346 (467)
T TIGR01318 283 KRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRDEA-------NMPGS-R---R-----EVANAREEGVEFLFNVQPVYI 346 (467)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecCcc-------cCCCC-H---H-----HHHHHHhcCCEEEecCCcEEE
Confidence 449999999999999888765 233222111 01111 1 1 123355679999998 35555
Q ss_pred c--C-CeEE-EEe---C---------------CCCeeEEEcCeEEEccCCCCC
Q psy14927 868 G--P-NTVT-VIK---S---------------DGSTEEVKTKNILIATGSEVT 898 (1074)
Q Consensus 868 d--~-~~~~-v~~---~---------------~G~~~~i~~d~lIIATG~~p~ 898 (1074)
. . ..++ |++ . .|+..++.+|.||+|+|..|.
T Consensus 347 ~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~~D~Vi~a~G~~p~ 399 (467)
T TIGR01318 347 ECDEDGRVTGVGLVRTALGEPDADGRRRPVPVAGSEFVLPADVVIMAFGFQPH 399 (467)
T ss_pred EECCCCeEEEEEEEEEEecccCCCCCccceecCCceEEEECCEEEECCcCCCC
Confidence 2 1 1121 111 1 133457999999999999874
No 470
>KOG1276|consensus
Probab=89.79 E-value=0.11 Score=58.82 Aligned_cols=37 Identities=24% Similarity=0.214 Sum_probs=32.3
Q ss_pred chhhhhhccccchHHHHHHHhh-------hhhhhccccccccch
Q psy14927 794 RQVVLNTLGNCAAVQANYHLAT-------KLFTQAGDKGVKLNL 830 (1074)
Q Consensus 794 k~~VviiGgG~AGl~aA~~la~-------~l~e~~~~~g~~~~~ 830 (1074)
..+|+|+|||.+||.+|++|++ ++||..++.||-+.-
T Consensus 11 ~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwirS 54 (491)
T KOG1276|consen 11 GMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIRS 54 (491)
T ss_pred cceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccceeee
Confidence 4459999999999999999999 679999999986643
No 471
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=89.78 E-value=0.48 Score=59.36 Aligned_cols=88 Identities=15% Similarity=0.138 Sum_probs=50.0
Q ss_pred hhhhhhccccchHHHHHHHhh------hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEeee-EEEe
Q psy14927 795 QVVLNTLGNCAAVQANYHLAT------KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGH-GKIT 867 (1074)
Q Consensus 795 ~~VviiGgG~AGl~aA~~la~------~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~-v~~i 867 (1074)
++|||||||..|+.+|..+.+ +++..... ..++... .+ +. .....||+|+++. ++.+
T Consensus 324 k~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~~-------~~mpa~~----~e----i~-~a~~eGV~i~~~~~~~~i 387 (652)
T PRK12814 324 KKVVVIGGGNTAIDAARTALRLGAESVTILYRRTR-------EEMPANR----AE----IE-EALAEGVSLRELAAPVSI 387 (652)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCc-------ccCCCCH----HH----HH-HHHHcCCcEEeccCcEEE
Confidence 449999999999999998876 22221110 0111111 11 11 1224699998873 3343
Q ss_pred c--CCeEEEE---e---------------CCCCeeEEEcCeEEEccCCCCC
Q psy14927 868 G--PNTVTVI---K---------------SDGSTEEVKTKNILIATGSEVT 898 (1074)
Q Consensus 868 d--~~~~~v~---~---------------~~G~~~~i~~d~lIIATG~~p~ 898 (1074)
. .+.+.+. + .+|+..++.+|.||+|+|..|.
T Consensus 388 ~~~~~~~~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~~D~VI~AiG~~p~ 438 (652)
T PRK12814 388 ERSEGGLELTAIKMQQGEPDESGRRRPVPVEGSEFTLQADTVISAIGQQVD 438 (652)
T ss_pred EecCCeEEEEEEEEEecccCCCCCCcceecCCceEEEECCEEEECCCCcCC
Confidence 2 2222221 1 1233457999999999999874
No 472
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=89.76 E-value=2.2 Score=50.69 Aligned_cols=60 Identities=20% Similarity=0.238 Sum_probs=45.6
Q ss_pred CHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCe--EEEEEeeccCCCCceEEEcCEEEEccCCcccC
Q psy14927 947 DGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDN--ITVTIENVKDPTKKEELSCDALLVCVGRRPYT 1012 (1074)
Q Consensus 947 ~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~--~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p~~ 1012 (1074)
..++.+.+.+.++..|..+++++.|.+|..++++ +.|++.+ ++++.++.||......|..
T Consensus 231 ~g~L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~------Ge~i~a~~VV~~~s~~p~~ 292 (443)
T PTZ00363 231 LGGLPQAFSRLCAIYGGTYMLNTPVDEVVFDENGKVCGVKSEG------GEVAKCKLVICDPSYFPDK 292 (443)
T ss_pred HHHHHHHHHHHHHHcCcEEEcCCeEEEEEEcCCCeEEEEEECC------CcEEECCEEEECccccccc
Confidence 3467777878888999999999999999765443 3455443 4678999999988777653
No 473
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=89.68 E-value=0.59 Score=48.98 Aligned_cols=61 Identities=23% Similarity=0.439 Sum_probs=43.5
Q ss_pred CHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccCC--cccCC
Q psy14927 947 DGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGR--RPYTH 1013 (1074)
Q Consensus 947 ~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~--~p~~~ 1013 (1074)
.+++.+++....++.+++++++++|+++..++++..|++.+ ++++.+|.||+|+|. .|...
T Consensus 81 ~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~~~------~~~~~a~~VVlAtG~~~~p~~p 143 (203)
T PF13738_consen 81 GEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDGWTVTTRD------GRTIRADRVVLATGHYSHPRIP 143 (203)
T ss_dssp HHHHHHHHHHHHHHTTGGEETS--EEEEEEETTTEEEEETT------S-EEEEEEEEE---SSCSB---
T ss_pred HHHHHHHHHHHHhhcCcccccCCEEEEEEEeccEEEEEEEe------cceeeeeeEEEeeeccCCCCcc
Confidence 45677888888999999999999999999988887777665 368899999999996 55443
No 474
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=89.56 E-value=0.11 Score=62.45 Aligned_cols=50 Identities=22% Similarity=0.427 Sum_probs=35.6
Q ss_pred HHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccC
Q psy14927 950 VAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVG 1007 (1074)
Q Consensus 950 ~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G 1007 (1074)
+.+.+.+.+.. ++|++++.|++|+..++++.|.+.+ +.++.+|.||+++.
T Consensus 228 l~~~l~~~l~~--~~i~~~~~V~~I~~~~~~~~v~~~~------g~~~~ad~VI~a~p 277 (463)
T PRK12416 228 IIDRLEEVLTE--TVVKKGAVTTAVSKQGDRYEISFAN------HESIQADYVVLAAP 277 (463)
T ss_pred HHHHHHHhccc--ccEEcCCEEEEEEEcCCEEEEEECC------CCEEEeCEEEECCC
Confidence 44444444433 5799999999999877776665443 34689999999875
No 475
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=89.53 E-value=0.12 Score=55.15 Aligned_cols=31 Identities=23% Similarity=0.302 Sum_probs=27.2
Q ss_pred CCEEEecccCCCCCcHHHHHHHHHHHHHHhhC
Q psy14927 1041 PNIFAIGDCIHGPMLAHKAEDEGIVCVEGIAG 1072 (1074)
Q Consensus 1041 ~~IyAiGD~~~~~~~~~~A~~~G~~aA~~I~~ 1072 (1074)
-++|++||-+.++ .+..|...|..+|.+|++
T Consensus 299 ~~l~~cGDwc~Gg-rVEgA~LSGlAaA~~i~~ 329 (331)
T COG3380 299 LPLYACGDWCAGG-RVEGAVLSGLAAADHILN 329 (331)
T ss_pred CceeeecccccCc-chhHHHhccHHHHHHHHh
Confidence 4699999988875 689999999999999975
No 476
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=89.52 E-value=0.13 Score=62.16 Aligned_cols=56 Identities=16% Similarity=0.327 Sum_probs=43.7
Q ss_pred CHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCe-EEEEEeeccCCCCceEEEcCEEEEccCC
Q psy14927 947 DGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDN-ITVTIENVKDPTKKEELSCDALLVCVGR 1008 (1074)
Q Consensus 947 ~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~-~~v~~~~~~~~g~~~~i~~D~vi~a~G~ 1008 (1074)
...+.+.+.+.+++.|++|+++++|++|..+++. +.+...+ +..+++|.||.....
T Consensus 223 ~~al~~aL~~~~~~~Gg~I~~~~~V~~I~v~~g~g~~~~~~~------g~~~~ad~vv~~~~~ 279 (487)
T COG1233 223 MGALVDALAELAREHGGEIRTGAEVSQILVEGGKGVGVRTSD------GENIEADAVVSNADP 279 (487)
T ss_pred HHHHHHHHHHHHHHcCCEEECCCceEEEEEeCCcceEEeccc------cceeccceeEecCch
Confidence 3567788889999999999999999999987654 4444332 368999999987665
No 477
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=89.40 E-value=13 Score=37.71 Aligned_cols=46 Identities=26% Similarity=0.133 Sum_probs=29.6
Q ss_pred hCccchhhHHHHHHHhhh--------hHHHHHHHHHHHHhhhcHHHHHHHHHHh
Q psy14927 605 SNKALKIITKQIILILII--------YRVLLKWWAQYIESTEDMDLAMKYYEEA 650 (1074)
Q Consensus 605 ~~~i~~~~~~~~~~~~~~--------~~~l~~~~a~~~e~~~~~~~A~~~y~~a 650 (1074)
++-||+.|.-|++..... ........|......|+|++|..+|.++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 61 (172)
T PRK02603 8 DNFIDKSFTVMADLILKILPINKKAKEAFVYYRDGMSAQADGEYAEALENYEEA 61 (172)
T ss_pred cchHhHHHHHHHHHHHHHcccccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344667777777733322 1145667777777778888888877765
No 478
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=89.37 E-value=0.86 Score=51.17 Aligned_cols=85 Identities=20% Similarity=0.213 Sum_probs=56.6
Q ss_pred hhhhhccccchHHHHHHHhh-----hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhC-CeEEEee-eEEEec
Q psy14927 796 VVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSN-KVTQLNG-HGKITG 868 (1074)
Q Consensus 796 ~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~-gV~~~~g-~v~~id 868 (1074)
+|+|||||...+..|+.|++ +++-+.+. +.. .....+.+.+. +|.++++ .+..+.
T Consensus 145 ~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~~---------~ra---------~~~~~~~l~~~~~i~~~~~~~i~ei~ 206 (305)
T COG0492 145 DVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDE---------FRA---------EEILVERLKKNVKIEVLTNTVVKEIL 206 (305)
T ss_pred eEEEEcCCHHHHHHHHHHHHhcCeEEEEecCcc---------cCc---------CHHHHHHHHhcCCeEEEeCCceeEEe
Confidence 59999999999999999999 22222111 111 11133344444 8999999 567776
Q ss_pred CCe-EEEEeCC--CCeeEEEcCeEEEccCCCCC
Q psy14927 869 PNT-VTVIKSD--GSTEEVKTKNILIATGSEVT 898 (1074)
Q Consensus 869 ~~~-~~v~~~~--G~~~~i~~d~lIIATG~~p~ 898 (1074)
.+. -.|++++ |....+..|.|+++.|..|.
T Consensus 207 G~~v~~v~l~~~~~~~~~~~~~gvf~~iG~~p~ 239 (305)
T COG0492 207 GDDVEGVVLKNVKGEEKELPVDGVFIAIGHLPN 239 (305)
T ss_pred cCccceEEEEecCCceEEEEeceEEEecCCCCc
Confidence 643 2333333 65678999999999999985
No 479
>KOG1174|consensus
Probab=89.35 E-value=3.2 Score=47.01 Aligned_cols=134 Identities=16% Similarity=0.160 Sum_probs=99.3
Q ss_pred HHHHHHHhhhcHHHHHHHHHHh--------hCHHHHHHHHHHcCCHHHHHHHHHh----cCCcHHHH-HHH--HHHHhcC
Q psy14927 629 WWAQYIESTEDMDLAMKYYEEA--------RDYLSMVRVLCFLQDFSRAAELANA----SGDTAAAY-HLA--RQYENSG 693 (1074)
Q Consensus 629 ~~a~~~e~~~~~~~A~~~y~~a--------g~~~~ai~~~~~~~~~~~a~~v~~~----~~~~~~~~-~~A--~~~~~~g 693 (1074)
--|..+-.-++..+|+-+|-.| ..|+..|++|.-.+.+.+|.-+++. .+.+..+. .++ -+|.+--
T Consensus 339 lKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~ 418 (564)
T KOG1174|consen 339 LKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPR 418 (564)
T ss_pred hccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCch
Confidence 3466677788999999999988 5677889999999999999988852 23333333 332 2444445
Q ss_pred CHHHHHHHHHHcCCHH----HHHHH-------hccHHHHHHHHHHhCCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHhC
Q psy14927 694 QFDEAIHFYSVAGSCG----NAVRL-------CGQLDAVESIASELNVQ-SDQDLILKCASYFARREHHDRAVQMYAIAR 761 (1074)
Q Consensus 694 ~~~~A~~~~~kag~~~----~Av~m-------a~~w~~a~~~A~~~~~~-~~~~~~~~~a~~~~~~~~~~~Ai~~y~~ag 761 (1074)
--|.|..||.++-..+ .||.. -+...++..+-+.|+.. .+..+.+.+|+.+...+++..|...|..+-
T Consensus 419 ~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~AL 498 (564)
T KOG1174|consen 419 MREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKAL 498 (564)
T ss_pred hHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 5688999998885443 45533 48888999999998754 444788999999999999999999988764
Q ss_pred C
Q psy14927 762 R 762 (1074)
Q Consensus 762 ~ 762 (1074)
.
T Consensus 499 r 499 (564)
T KOG1174|consen 499 R 499 (564)
T ss_pred h
Confidence 3
No 480
>KOG1156|consensus
Probab=89.32 E-value=7.2 Score=46.79 Aligned_cols=213 Identities=18% Similarity=0.098 Sum_probs=0.0
Q ss_pred hccCHHHHHHHHHH-------------------hhChhhhhhH-hhccCCHHHHHHHHH-----hcCChHHHHHHHHHHH
Q psy14927 62 STEDMDLAMKYYEE-------------------ARDYLSMVRV-LCFLQDFSRAAELAN-----ASGDTAAAYHLARQYE 116 (1074)
Q Consensus 62 ~~~~~~~A~~~y~~-------------------a~d~~~~vr~-l~~~~~~~~a~~i~~-----~~~~~~~~~~la~~~~ 116 (1074)
+...|..+++||+. -||-.++--+ |+.+|+-++|...|+ +.++.-.+.-+|-++.
T Consensus 7 E~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R 86 (700)
T KOG1156|consen 7 ENALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQR 86 (700)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHh
Q ss_pred hcCChHHHHHHHHHhCChHHHHHHHHHhCchHHHHHHhhhcCc-hhHHHHH----HHHcc--CC---hhHHHHHHHHhCC
Q psy14927 117 NSGQFDEAIHFYSVAGSCGNAVRLCKEQALDDQLWNLALSAGP-SEQIEAA----TYLET--IE---PDKAVLLYHKAGA 186 (1074)
Q Consensus 117 ~~g~~~~Ai~~y~~a~~~~~A~~la~~~~~~~~~~~l~~~~~~-~~~~~~A----~~~e~--~~---~~~A~~ly~kaG~ 186 (1074)
.--+|++||+.|+.|.+|+ .+..+-+-+++..-.| .+|...+ ++|+- ++ +..+.--++.-|+
T Consensus 87 ~dK~Y~eaiKcy~nAl~~~--------~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~ 158 (700)
T KOG1156|consen 87 SDKKYDEAIKCYRNALKIE--------KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGE 158 (700)
T ss_pred hhhhHHHHHHHHHHHHhcC--------CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q ss_pred hHHHHHHHHhhccCCcchHHHHHHHHHHhcCCChhhHHHhhhhcchHHHHHHHHH---HHhcCCCCCChhHHHHH-----
Q psy14927 187 LHKALDLAFKLTLSNSGLVFQIKAMKCLLKSGDTNKIIFFAGVSRMKEIYVMAAN---YLQSSDWKSQPELLKSI----- 258 (1074)
Q Consensus 187 ~~kAl~l~~~~~~~~~~~~~~~~a~k~l~~~~~~~~~i~~a~~~r~~~l~~~aa~---yl~~~~~~~~~~~~~~i----- 258 (1074)
+..|+.+.-. .-+....+-+.+..-+---.+.+-.+-..++. -|+.+ ....|+...++
T Consensus 159 y~~A~~il~e-------------f~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L-~~~e~~i~Dkla~~e~ 224 (700)
T KOG1156|consen 159 YKMALEILEE-------------FEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHL-LDNEKQIVDKLAFEET 224 (700)
T ss_pred HHHHHHHHHH-------------HHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHH-HhhhhHHHHHHHHhhh
Q ss_pred -HHHHHccCCHHHHHHHHHHHHhHHHHhhcCHHHHHHHH
Q psy14927 259 -ISFYSKGKAPHLLANFYVSCAQVEIDEFGNYEKGLGAL 296 (1074)
Q Consensus 259 -~~~Y~k~~~~~~aa~~~~~~a~~ei~e~~~y~~a~~~l 296 (1074)
..+|++.+++++|..+|...-..==+.+.-|+..+..|
T Consensus 225 ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~l 263 (700)
T KOG1156|consen 225 KADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKAL 263 (700)
T ss_pred HHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHH
No 481
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.31 E-value=0.26 Score=59.53 Aligned_cols=71 Identities=14% Similarity=0.096 Sum_probs=46.5
Q ss_pred chhhhhhccccchHHHHHHHhh-----hhhhhccccccccchhhhhhhhhHHHhhhhhhHHHHhhhCCeEEEeeeEEEec
Q psy14927 794 RQVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITG 868 (1074)
Q Consensus 794 k~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~gV~~~~g~v~~id 868 (1074)
.++|+|||+|+.|+++|..|++ ++++..+. .......+.+++.||+++.|....
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~-------------------~~~~~~~~~l~~~gv~~~~~~~~~-- 74 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALLELGARVTVVDDGDD-------------------ERHRALAAILEALGATVRLGPGPT-- 74 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch-------------------hhhHHHHHHHHHcCCEEEECCCcc--
Confidence 3459999999999999988877 22222110 011123455667899998884211
Q ss_pred CCeEEEEeCCCCeeEEEcCeEEEccCCCCC
Q psy14927 869 PNTVTVIKSDGSTEEVKTKNILIATGSEVT 898 (1074)
Q Consensus 869 ~~~~~v~~~~G~~~~i~~d~lIIATG~~p~ 898 (1074)
. ...+|.||+++|..|.
T Consensus 75 -----~--------~~~~D~Vv~s~Gi~~~ 91 (480)
T PRK01438 75 -----L--------PEDTDLVVTSPGWRPD 91 (480)
T ss_pred -----c--------cCCCCEEEECCCcCCC
Confidence 0 2458999999999873
No 482
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=89.27 E-value=1.1 Score=53.14 Aligned_cols=97 Identities=15% Similarity=0.031 Sum_probs=0.0
Q ss_pred hhccccchHHHHHHHhh-----hhhhhcc--ccccccchhhh--------------------------------------
Q psy14927 799 NTLGNCAAVQANYHLAT-----KLFTQAG--DKGVKLNLETM-------------------------------------- 833 (1074)
Q Consensus 799 iiGgG~AGl~aA~~la~-----~l~e~~~--~~g~~~~~~~~-------------------------------------- 833 (1074)
|||+|.+|+.||+++++ +++|+.+ ..|+......-
T Consensus 1 VVG~G~AGl~AA~~Aa~~Ga~V~vlEK~~~~~~Gg~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~ 80 (432)
T TIGR02485 1 VIGGGLAGLCAAIEARRAGASVLLLEAAPRARRGGNARHGRNIRVAHDIPTDFQRDSYPAEEFERDLAPVTGGRTNESLS 80 (432)
T ss_pred CCcccHHHHHHHHHHHhCCCcEEEEeCCCCCcCCcCcccccchhhcccchhhhhhhhccHHHHHHHHHHhhCCCCCHHHH
Q ss_pred ------hhhhhHHHhh----------------------------hhhhHHHHhhhCCeEEEee-eEEEec----CCeEEE
Q psy14927 834 ------MGTKSAAVKA----------------------------LTGGIAHLFKSNKVTQLNG-HGKITG----PNTVTV 874 (1074)
Q Consensus 834 ------~~~~~~~~~~----------------------------l~~~~~~~l~~~gV~~~~g-~v~~id----~~~~~v 874 (1074)
....-....+ +...+.+.+++.|++++++ .|+.+. ...+.-
T Consensus 81 ~~~~~~s~~~i~wl~~~Gv~f~~~~~g~~~~~~~~~~~~~~g~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~g 160 (432)
T TIGR02485 81 RLGIGRGSRDLRWAFAHGVHLQPPAAGNLPYSRRTAFLRGGGKALTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDG 160 (432)
T ss_pred HHHHhcchhHHHHHHhCCceeeecCCCCccccCceeeecCCHHHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEE
Q ss_pred EeCCCCeeEEEcCeEEEccCC
Q psy14927 875 IKSDGSTEEVKTKNILIATGS 895 (1074)
Q Consensus 875 ~~~~G~~~~i~~d~lIIATG~ 895 (1074)
....++...+.++.||||||.
T Consensus 161 v~~~~~~~~i~ak~VIlAtGG 181 (432)
T TIGR02485 161 PLTTVGTHRITTQALVLAAGG 181 (432)
T ss_pred EEEcCCcEEEEcCEEEEcCCC
No 483
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=89.20 E-value=11 Score=46.28 Aligned_cols=197 Identities=11% Similarity=0.054 Sum_probs=120.2
Q ss_pred CcccCHHHHHHHHHHHHHHHHHHHH---HHhhhCccchhhHHHHHHHhhhhHHHHHHHHHHHHh-hhcHHHHHHHHHHhh
Q psy14927 576 GVKLNLETMMGTKSAAVKALTGGIA---HLFKSNKALKIITKQIILILIIYRVLLKWWAQYIES-TEDMDLAMKYYEEAR 651 (1074)
Q Consensus 576 ~~~~~w~~~~~~~~~~i~~l~~~~~---~~l~~~~i~~~~~~~~~~~~~~~~~l~~~~a~~~e~-~~~~~~A~~~y~~ag 651 (1074)
..++.|+-.-+.++..++.+...+. ..++..||-.=++-.-.|.....+ -....|... ..++-++.-+|+.-|
T Consensus 341 ~~~i~WA~hS~~qe~Ll~~~~~~~~~~W~~~r~~gv~~W~~~~~~Lr~~~E~---iAr~~~~~~~~~dp~~~al~YlAl~ 417 (631)
T PF12234_consen 341 TRDIAWAFHSDSQEELLSLVPPQIKLSWEEARELGVGFWLRSIESLRSQFEK---IARNEFQKNDTKDPSDCALFYLALG 417 (631)
T ss_pred HHHHHHHHhccCHHHHHHHhhhhccCCHHHHHhhCCEEeecCHHHHHHHHHH---HHHHHHhhccCCCHHHHHHHHHHhc
Confidence 3467888887777777777776543 345555554111111111111111 112334432 456777777888888
Q ss_pred CHHHHHHHHH----HcCCHHHHHHHHHhcCCcHHHH----HHHHHHHhcCCHHHHHHHHHHcCCHHHHHHH----hccHH
Q psy14927 652 DYLSMVRVLC----FLQDFSRAAELANASGDTAAAY----HLARQYENSGQFDEAIHFYSVAGSCGNAVRL----CGQLD 719 (1074)
Q Consensus 652 ~~~~ai~~~~----~~~~~~~a~~v~~~~~~~~~~~----~~A~~~~~~g~~~~A~~~~~kag~~~~Av~m----a~~w~ 719 (1074)
+..-..-+|. +.++ .+..+.....-+++.-+ .=|-.+-....|+.|..||+.||++++||+. .++.+
T Consensus 418 Kk~vL~~L~k~a~~~~~~-~k~~~Fl~ndF~~~rwr~AAlKNAyaLlsk~Ry~~AAaFFLLag~l~dAv~V~~~~l~D~q 496 (631)
T PF12234_consen 418 KKKVLAGLWKMASWHKEQ-QKMAKFLSNDFTEPRWRTAALKNAYALLSKHRYEYAAAFFLLAGSLKDAVNVCLRQLNDPQ 496 (631)
T ss_pred cHHHHHHHHHhhhccccc-HHHHHHHhhcCCChHHHHHHHHhHHHHHhcccHHHHHHHHHhcccHHHHHHHHHHHccChh
Confidence 7655555565 2222 23344443332222222 3377778888999999999999999999999 47788
Q ss_pred HHHHHHHHhCCcccHHHHHHHHHHH-----HHcCCHHHHHHHHHHhCCHHHHHHHHHHcCCCC
Q psy14927 720 AVESIASELNVQSDQDLILKCASYF-----ARREHHDRAVQMYAIARRYDQALSLIQTKHVPL 777 (1074)
Q Consensus 720 ~a~~~A~~~~~~~~~~~~~~~a~~~-----~~~~~~~~Ai~~y~~ag~~~~Ai~~~~~~~~~~ 777 (1074)
=|+-+++-+..+.- +++..+-+.. ...|++=.+--+|-..++++.|++.+.....+.
T Consensus 497 LAi~i~Rl~e~d~g-p~~~~ll~~~vLp~a~~~~d~wl~s~~~W~L~~~~~ai~~Li~~~~~~ 558 (631)
T PF12234_consen 497 LAIAIARLYEGDNG-PVLKKLLEEHVLPEAIKEGDRWLASWAFWMLGDYDEAIRALISPPIDL 558 (631)
T ss_pred HHHHHHHHHcCCCc-hHHHHHHHHhhhccccccCCHHHHHHHHHhcCCHHHHHHHHhcCcccc
Confidence 89999998855532 3333333222 245555566667778999999999988876644
No 484
>KOG2665|consensus
Probab=89.20 E-value=0.76 Score=50.12 Aligned_cols=66 Identities=18% Similarity=0.258 Sum_probs=45.6
Q ss_pred HHHHHHhCCCEEEeCceEEEEEecCCe---EEEEEeeccCCCCceEEEcCEEEEccCCcccCCccCccccCcccCC
Q psy14927 954 FQRILGKQGMQFKLGTKVTGASKSGDN---ITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDE 1026 (1074)
Q Consensus 954 ~~~~l~~~gV~i~~~~~v~~i~~~~~~---~~v~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~ld~ 1026 (1074)
+-+.++..|-.++++.+++.+....+. .-+.+.+ |+++++.+..++-|+|...+.- .+..|+++|+
T Consensus 202 ~~edF~~~gg~i~~n~~l~g~~~n~~~~~~Ypivv~n----gk~ee~r~~~~vtc~gl~sdr~---aa~sgc~~dP 270 (453)
T KOG2665|consen 202 FGEDFDFMGGRIYTNFRLQGIAQNKEATFSYPIVVLN----GKGEEKRTKNVVTCAGLQSDRC---AALSGCELDP 270 (453)
T ss_pred HHHHHHHhcccccccceeccchhccCCCCCCceEEec----CccceeEEeEEEEeccccHhHH---HHHhCCCCCC
Confidence 344578889999999999999875543 2233344 6688999999999999875432 2344555554
No 485
>KOG2852|consensus
Probab=89.18 E-value=0.37 Score=51.92 Aligned_cols=49 Identities=12% Similarity=0.146 Sum_probs=31.6
Q ss_pred HHHhhhCCeEEEeeeEEEecCCeEEEEe---C--CCCeeEEEcCeEEEccCCCC
Q psy14927 849 AHLFKSNKVTQLNGHGKITGPNTVTVIK---S--DGSTEEVKTKNILIATGSEV 897 (1074)
Q Consensus 849 ~~~l~~~gV~~~~g~v~~id~~~~~v~~---~--~G~~~~i~~d~lIIATG~~p 897 (1074)
.+..++.||+++.|.|..+..+..++.. . .+.......+.+|+|.|.+.
T Consensus 155 sea~k~~~V~lv~Gkv~ev~dEk~r~n~v~~ae~~~ti~~~d~~~ivvsaGPWT 208 (380)
T KOG2852|consen 155 SEAEKRGGVKLVFGKVKEVSDEKHRINSVPKAEAEDTIIKADVHKIVVSAGPWT 208 (380)
T ss_pred HHHHhhcCeEEEEeeeEEeecccccccccchhhhcCceEEeeeeEEEEecCCCc
Confidence 3444556799999999888533222221 1 11125678999999999874
No 486
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=89.17 E-value=2.8 Score=43.08 Aligned_cols=83 Identities=27% Similarity=0.328 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHhhCh-----------hhhhhHhhccCCHHHHHHHHHh-------cCChHHHH---
Q psy14927 51 VLLKWWAQYIESTEDMDLAMKYYEEARDY-----------LSMVRVLCFLQDFSRAAELANA-------SGDTAAAY--- 109 (1074)
Q Consensus 51 ~l~~~~a~~~e~~~~~~~A~~~y~~a~d~-----------~~~vr~l~~~~~~~~a~~i~~~-------~~~~~~~~--- 109 (1074)
..+...|+++.+.|+++.|.++|.++.|+ .+++|+....+||..+...+.+ .++.+.-.
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 45667899999999999999999999998 5788888888888777666542 23333222
Q ss_pred -HHHHHHHhcCChHHHHHHHHHhCC
Q psy14927 110 -HLARQYENSGQFDEAIHFYSVAGS 133 (1074)
Q Consensus 110 -~la~~~~~~g~~~~Ai~~y~~a~~ 133 (1074)
.-|-++..+++|..|.+.|..+-.
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccCc
Confidence 233556678888888888877643
No 487
>KOG1125|consensus
Probab=89.17 E-value=7.1 Score=46.25 Aligned_cols=240 Identities=17% Similarity=0.184 Sum_probs=0.0
Q ss_pred HhhhcCCHHHHHHHHHHcCcccchhhhHhhhcHHHHHHHhhcCCChHHHHHHHHHHHhccCHHHHHHHHHHhhChhhhhh
Q psy14927 5 ETMKNGDIDRAIRMFEKAETHQQHVPRMLLENTDKLEKYIIQSKDPVLLKWWAQYIESTEDMDLAMKYYEEARDYLSMVR 84 (1074)
Q Consensus 5 ~~~~~g~~~eA~~~Ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~~~~vr 84 (1074)
+|++.|.+.+|+-.||-+=..+ +++-+-|+|+|-.--+..+-..|+.+..+|=+.
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqd--------------------P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~L----- 348 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQD--------------------PQHAEAWQKLGITQAENENEQNAISALRRCLEL----- 348 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhC--------------------hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhc-----
Q ss_pred HhhccCCHHHHHHHHHhcCChHHHHHHHHHHHhcCChHHHHHHHHHhCChHHHHHHHHHhCchHHHHHHhhhcCchhHHH
Q psy14927 85 VLCFLQDFSRAAELANASGDTAAAYHLARQYENSGQFDEAIHFYSVAGSCGNAVRLCKEQALDDQLWNLALSAGPSEQIE 164 (1074)
Q Consensus 85 ~l~~~~~~~~a~~i~~~~~~~~~~~~la~~~~~~g~~~~Ai~~y~~a~~~~~A~~la~~~~~~~~~~~l~~~~~~~~~~~ 164 (1074)
++++-.+..-||=.|...|.-.+|+++ +-.|+...++..++.
T Consensus 349 ----------------dP~NleaLmaLAVSytNeg~q~~Al~~----------------------L~~Wi~~~p~y~~l~ 390 (579)
T KOG1125|consen 349 ----------------DPTNLEALMALAVSYTNEGLQNQALKM----------------------LDKWIRNKPKYVHLV 390 (579)
T ss_pred ----------------CCccHHHHHHHHHHHhhhhhHHHHHHH----------------------HHHHHHhCccchhcc
Q ss_pred HH----------HHHccCChhHHHHHHHHhCChHH---------HHHHHHhhccCCcchHHHHHHHHHHhcCCChhhHHH
Q psy14927 165 AA----------TYLETIEPDKAVLLYHKAGALHK---------ALDLAFKLTLSNSGLVFQIKAMKCLLKSGDTNKIIF 225 (1074)
Q Consensus 165 ~A----------~~~e~~~~~~A~~ly~kaG~~~k---------Al~l~~~~~~~~~~~~~~~~a~k~l~~~~~~~~~i~ 225 (1074)
.+ .+.....+..-.++|..+++... +|-+++.+ +|+.+++|+
T Consensus 391 ~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~l-------------------s~efdraiD 451 (579)
T KOG1125|consen 391 SAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNL-------------------SGEFDRAVD 451 (579)
T ss_pred ccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhc-------------------chHHHHHHH
Q ss_pred hhhhc-----chHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHccCCHHHHH-----HHHHHHHhHHHHhhcCHHHHHHH
Q psy14927 226 FAGVS-----RMKEIYVMAANYLQSSDWKSQPELLKSIISFYSKGKAPHLLA-----NFYVSCAQVEIDEFGNYEKGLGA 295 (1074)
Q Consensus 226 ~a~~~-----r~~~l~~~aa~yl~~~~~~~~~~~~~~i~~~Y~k~~~~~~aa-----~~~~~~a~~ei~e~~~y~~a~~~ 295 (1074)
+-..+ .+..||.+++--|-+. +--.-++..|.++.+..-== +..+.|.+. |.|++|...
T Consensus 452 cf~~AL~v~Pnd~~lWNRLGAtLAN~------~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNl-----G~ykEA~~h 520 (579)
T KOG1125|consen 452 CFEAALQVKPNDYLLWNRLGATLANG------NRSEEAISAYNRALQLQPGYVRVRYNLGISCMNL-----GAYKEAVKH 520 (579)
T ss_pred HHHHHHhcCCchHHHHHHhhHHhcCC------cccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhh-----hhHHHHHHH
Q ss_pred HHHHHHHHHhcCCCchHHHH-HHHHHHHHHHHHhhcCChHHHhh
Q psy14927 296 LNEAKRCLLKHNDSMYETLK-SSVVEKLAEVEIDEFGNYEKGLG 338 (1074)
Q Consensus 296 l~~a~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~ 338 (1074)
|-+|+..-++........+. .++...+.-.++. ++..|.+..
T Consensus 521 lL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~-~~~~D~l~~ 563 (579)
T KOG1125|consen 521 LLEALSMQRKSRNHNKAPMASENIWQTLRLALSA-MNRSDLLQE 563 (579)
T ss_pred HHHHHHhhhcccccccCCcchHHHHHHHHHHHHH-cCCchHHHH
No 488
>KOG0550|consensus
Probab=89.11 E-value=5.5 Score=45.33 Aligned_cols=143 Identities=16% Similarity=0.063 Sum_probs=88.9
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHhhC------------hhhhhhHhhccCCHHHHHHHHHhcCCh-----HHHHHHHHH
Q psy14927 52 LLKWWAQYIESTEDMDLAMKYYEEARD------------YLSMVRVLCFLQDFSRAAELANASGDT-----AAAYHLARQ 114 (1074)
Q Consensus 52 l~~~~a~~~e~~~~~~~A~~~y~~a~d------------~~~~vr~l~~~~~~~~a~~i~~~~~~~-----~~~~~la~~ 114 (1074)
-|+.-|.-+-..|.|..|.++|..|=. |.+..-+...+|++.+|..-+.+.-.. -+...-|+.
T Consensus 251 ~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c 330 (486)
T KOG0550|consen 251 VKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANC 330 (486)
T ss_pred HHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHH
Confidence 455558888889999999999998644 344444556789998888888754333 244566788
Q ss_pred HHhcCChHHHHHHHHHhCChHHHH---------HHHHHhCchHHHHH-Hh--hhcCchhHH------HHHHHH-------
Q psy14927 115 YENSGQFDEAIHFYSVAGSCGNAV---------RLCKEQALDDQLWN-LA--LSAGPSEQI------EAATYL------- 169 (1074)
Q Consensus 115 ~~~~g~~~~Ai~~y~~a~~~~~A~---------~la~~~~~~~~~~~-l~--~~~~~~~~~------~~A~~~------- 169 (1074)
+...++|++||+.|.++.+.+.-. +++-+.-.+.++.. |+ ...+..+.. .+..+.
T Consensus 331 ~l~le~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aLkkSkRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq 410 (486)
T KOG0550|consen 331 HLALEKWEEAVEDYEKAMQLEKDCEIRRTLREAQLALKKSKRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQ 410 (486)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhhhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchh
Confidence 999999999999999876654321 11112222333332 22 222222111 112222
Q ss_pred -c-cCChhHHHHHHHHhCChHHHHHHH
Q psy14927 170 -E-TIEPDKAVLLYHKAGALHKALDLA 194 (1074)
Q Consensus 170 -e-~~~~~~A~~ly~kaG~~~kAl~l~ 194 (1074)
| +..|.++++.|...+++.++.+..
T Consensus 411 ~eaE~kFkevgeAy~il~d~~kr~r~d 437 (486)
T KOG0550|consen 411 KEAEAKFKEVGEAYTILSDPMKRVRFD 437 (486)
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHhhcc
Confidence 1 234677888888888888887654
No 489
>PRK15331 chaperone protein SicA; Provisional
Probab=88.75 E-value=8.5 Score=38.72 Aligned_cols=149 Identities=14% Similarity=0.064 Sum_probs=0.0
Q ss_pred CChHHhhhcCCHHHHHHHHHHcCcccchhhhHhhhcHHHHHHHhhcCCChHHHHHH--HHHHHhccCHHHHHHHHHHhhC
Q psy14927 1 MKEEETMKNGDIDRAIRMFEKAETHQQHVPRMLLENTDKLEKYIIQSKDPVLLKWW--AQYIESTEDMDLAMKYYEEARD 78 (1074)
Q Consensus 1 ~~~~~~~~~g~~~eA~~~Ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--a~~~e~~~~~~~A~~~y~~a~d 78 (1074)
|...+-.+..++.+.+..--..| .-+.+ +...++..|-.-| |-.+...|++++|..+|
T Consensus 1 ~~~~~~~~~~~~~~~i~~al~~G----~tlk~-----------l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F----- 60 (165)
T PRK15331 1 MDYQNNVSEERVAEMIWDAVSEG----ATLKD-----------VHGIPQDMMDGLYAHAYEFYNQGRLDEAETFF----- 60 (165)
T ss_pred CCcchhhhHHHHHHHHHHHHHCC----CCHHH-----------HhCCCHHHHHHHHHHHHHHHHCCCHHHHHHHH-----
Q ss_pred hhhhhhHhhccCCHHHHHHHHHhcCChHHHHHHHHHHHhcCChHHHHHHHHHhCChHHHHHHHHHhCchHHHHHHhhhcC
Q psy14927 79 YLSMVRVLCFLQDFSRAAELANASGDTAAAYHLARQYENSGQFDEAIHFYSVAGSCGNAVRLCKEQALDDQLWNLALSAG 158 (1074)
Q Consensus 79 ~~~~vr~l~~~~~~~~a~~i~~~~~~~~~~~~la~~~~~~g~~~~Ai~~y~~a~~~~~A~~la~~~~~~~~~~~l~~~~~ 158 (1074)
|+||..+-+ +..-..-||-.+...+++++||.+|..+...+ .+.+
T Consensus 61 -----~~L~~~d~~-----------n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-------------------~~dp 105 (165)
T PRK15331 61 -----RFLCIYDFY-----------NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-------------------KNDY 105 (165)
T ss_pred -----HHHHHhCcC-----------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-------------------cCCC
Q ss_pred chhHHHHHHHHccCChhHHHHHHHHhCChHHHHHHHHhhccCCcchHHHHHHHHHHhcCCChhhHHHhhhhcchHHHHHH
Q psy14927 159 PSEQIEAATYLETIEPDKAVLLYHKAGALHKALDLAFKLTLSNSGLVFQIKAMKCLLKSGDTNKIIFFAGVSRMKEIYVM 238 (1074)
Q Consensus 159 ~~~~~~~A~~~e~~~~~~A~~ly~kaG~~~kAl~l~~~~~~~~~~~~~~~~a~k~l~~~~~~~~~i~~a~~~r~~~l~~~ 238 (1074)
... --|+..|+.-|+..+|.+.+.. ....+...+|-.+
T Consensus 106 ~p~-------------f~agqC~l~l~~~~~A~~~f~~-----------------------------a~~~~~~~~l~~~ 143 (165)
T PRK15331 106 RPV-------------FFTGQCQLLMRKAAKARQCFEL-----------------------------VNERTEDESLRAK 143 (165)
T ss_pred Ccc-------------chHHHHHHHhCCHHHHHHHHHH-----------------------------HHhCcchHHHHHH
Q ss_pred HHHHHhcC
Q psy14927 239 AANYLQSS 246 (1074)
Q Consensus 239 aa~yl~~~ 246 (1074)
|..||..+
T Consensus 144 A~~~L~~l 151 (165)
T PRK15331 144 ALVYLEAL 151 (165)
T ss_pred HHHHHHHH
No 490
>PLN02529 lysine-specific histone demethylase 1
Probab=88.28 E-value=0.19 Score=62.87 Aligned_cols=37 Identities=14% Similarity=0.111 Sum_probs=32.3
Q ss_pred chhhhhhccccchHHHHHHHhh-----hhhhhccccccccch
Q psy14927 794 RQVVLNTLGNCAAVQANYHLAT-----KLFTQAGDKGVKLNL 830 (1074)
Q Consensus 794 k~~VviiGgG~AGl~aA~~la~-----~l~e~~~~~g~~~~~ 830 (1074)
+++|+|||||++|++||+.|++ +++|+.+..||.+..
T Consensus 160 ~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~~t 201 (738)
T PLN02529 160 EGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGGRVYT 201 (738)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCcCceee
Confidence 4569999999999999999998 899999988887643
No 491
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=88.27 E-value=0.51 Score=57.34 Aligned_cols=95 Identities=13% Similarity=0.112 Sum_probs=59.7
Q ss_pred chhhhhhccccchHHHHHHHhhhhhhhccccccccchhhhhhhhh-HHHhhh-hhhHHHHhhhCCeEEEeeeEE-Eec--
Q psy14927 794 RQVVLNTLGNCAAVQANYHLATKLFTQAGDKGVKLNLETMMGTKS-AAVKAL-TGGIAHLFKSNKVTQLNGHGK-ITG-- 868 (1074)
Q Consensus 794 k~~VviiGgG~AGl~aA~~la~~l~e~~~~~g~~~~~~~~~~~~~-~~~~~l-~~~~~~~l~~~gV~~~~g~v~-~id-- 868 (1074)
+++-+|||||--|+.+|..|.. .|....+..+.+..- ..++.- -.-+...+.+.|++|+++..+ .+.
T Consensus 145 ~~~avVIGGGLLGlEaA~~L~~--------~Gm~~~Vvh~~~~lMerQLD~~ag~lL~~~le~~Gi~~~l~~~t~ei~g~ 216 (793)
T COG1251 145 KKKAVVIGGGLLGLEAARGLKD--------LGMEVTVVHIAPTLMERQLDRTAGRLLRRKLEDLGIKVLLEKNTEEIVGE 216 (793)
T ss_pred cCCcEEEccchhhhHHHHHHHh--------CCCceEEEeecchHHHHhhhhHHHHHHHHHHHhhcceeecccchhhhhcC
Confidence 4447889999999999999988 111111111111110 001111 122567777889999998432 222
Q ss_pred CCeEEEEeCCCCeeEEEcCeEEEccCCCCC
Q psy14927 869 PNTVTVIKSDGSTEEVKTKNILIATGSEVT 898 (1074)
Q Consensus 869 ~~~~~v~~~~G~~~~i~~d~lIIATG~~p~ 898 (1074)
.....+.++|| ..+.+|-||.|+|.+|.
T Consensus 217 ~~~~~vr~~DG--~~i~ad~VV~a~GIrPn 244 (793)
T COG1251 217 DKVEGVRFADG--TEIPADLVVMAVGIRPN 244 (793)
T ss_pred cceeeEeecCC--CcccceeEEEecccccc
Confidence 22345667888 78999999999999984
No 492
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=88.24 E-value=3 Score=46.22 Aligned_cols=57 Identities=18% Similarity=0.327 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEEeeccCCCCceEEEcCEEEEccCCc
Q psy14927 948 GEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRR 1009 (1074)
Q Consensus 948 ~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D~vi~a~G~~ 1009 (1074)
..+.+.+.+.+.+.|++++.+++++++..+++++.+.+.+ ++.++.+|.||.|+|..
T Consensus 91 ~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~~~~~~~~~-----~~~~~~a~~vv~a~G~~ 147 (295)
T TIGR02032 91 DAFDEQLAERAQEAGAELRLGTTVLDVEIHDDRVVVIVRG-----GEGTVTAKIVIGADGSR 147 (295)
T ss_pred HHHHHHHHHHHHHcCCEEEeCcEEeeEEEeCCEEEEEEcC-----ccEEEEeCEEEECCCcc
Confidence 4566677778888999999999999988766666665543 24579999999999964
No 493
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=88.15 E-value=4 Score=46.18 Aligned_cols=114 Identities=17% Similarity=0.189 Sum_probs=89.6
Q ss_pred HhhhcCCHHHHHHHHHHcCcccchh----hhHhh--hcHHHHHHHhhcCCChHHHHHHHHHHHhccCHHHHHHHHHHhhC
Q psy14927 5 ETMKNGDIDRAIRMFEKAETHQQHV----PRMLL--ENTDKLEKYIIQSKDPVLLKWWAQYIESTEDMDLAMKYYEEARD 78 (1074)
Q Consensus 5 ~~~~~g~~~eA~~~Ye~~~~~~~~~----~~~~~--~~~~~~~~~~~~~~~~~l~~~~a~~~e~~~~~~~A~~~y~~a~d 78 (1074)
.|-.+|+...|.++-.+=.-.|.+. .+.|. ++|+.|+.+-.+..+|-=+.-+.+.+...|+..+|.++-.+..|
T Consensus 186 ~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~skKsPIGyepFv~~~~~~~~~~eA~~yI~k~~~ 265 (319)
T PF04840_consen 186 KLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKSKKSPIGYEPFVEACLKYGNKKEASKYIPKIPD 265 (319)
T ss_pred HHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhCCCCCCChHHHHHHHHHCCCHHHHHHHHHhCCh
Confidence 4556788888887755544444332 11222 48999999998888898888889999999999999999999888
Q ss_pred hhhhhhHhhccCCHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q psy14927 79 YLSMVRVLCFLQDFSRAAELANASGDTAAAYHLARQYENSG 119 (1074)
Q Consensus 79 ~~~~vr~l~~~~~~~~a~~i~~~~~~~~~~~~la~~~~~~g 119 (1074)
...|++|...|+|.+|.+.+.+.+|.+....|=+.+-..+
T Consensus 266 -~~rv~~y~~~~~~~~A~~~A~~~kd~~~L~~i~~~~~~~~ 305 (319)
T PF04840_consen 266 -EERVEMYLKCGDYKEAAQEAFKEKDIDLLKQILKRCPGNN 305 (319)
T ss_pred -HHHHHHHHHCCCHHHHHHHHHHcCCHHHHHHHHHHCCCCC
Confidence 8999999999999999999999999888777766554433
No 494
>KOG0685|consensus
Probab=88.00 E-value=0.17 Score=58.37 Aligned_cols=34 Identities=12% Similarity=0.143 Sum_probs=30.8
Q ss_pred hhhhhccccchHHHHHHHhh------hhhhhccccccccc
Q psy14927 796 VVLNTLGNCAAVQANYHLAT------KLFTQAGDKGVKLN 829 (1074)
Q Consensus 796 ~VviiGgG~AGl~aA~~la~------~l~e~~~~~g~~~~ 829 (1074)
+|||||||.||++||..|-. +++|..++.||.+.
T Consensus 23 kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGGRI~ 62 (498)
T KOG0685|consen 23 KIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGRIH 62 (498)
T ss_pred eEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCceEe
Confidence 49999999999999999986 89999999999764
No 495
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=87.63 E-value=0.18 Score=60.59 Aligned_cols=34 Identities=24% Similarity=0.276 Sum_probs=29.7
Q ss_pred hhhhhhccccchHHHHHHHhh---------hhhhhcccccccc
Q psy14927 795 QVVLNTLGNCAAVQANYHLAT---------KLFTQAGDKGVKL 828 (1074)
Q Consensus 795 ~~VviiGgG~AGl~aA~~la~---------~l~e~~~~~g~~~ 828 (1074)
++|+|||||++||+||+.|++ +++|+.+..||..
T Consensus 3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~ 45 (462)
T TIGR00562 3 KHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKI 45 (462)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceE
Confidence 459999999999999999985 6899998888865
No 496
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=87.55 E-value=3 Score=48.18 Aligned_cols=81 Identities=16% Similarity=0.212 Sum_probs=59.2
Q ss_pred hhHHhhcCCcEEEEecCCccCC-CCCCHHHHHHHHHHHHhCCCEEEeCceEEEEEecCCeEEEEEeeccCCCCceEEEcC
Q psy14927 922 GSVWGRLGAEVTAIEFMNAIGG-MGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCD 1000 (1074)
Q Consensus 922 A~~l~~~G~~Vtlv~~~~~~~~-~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~i~~D 1000 (1074)
-.+|.+.|.. +..++..++.+ ..-..++.+.++..+++.||++++++.|..|.+ ++..+.+.+ + ...+.+|
T Consensus 60 ~~fF~~~Gi~-~~~e~~grvfP~S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i~~--~~~~v~~~~----~-~~~~~a~ 131 (376)
T TIGR03862 60 QDWARGLGIE-TFVGSSGRVFPVEMKAAPLLRAWLKRLAEQGVQFHTRHRWIGWQG--GTLRFETPD----G-QSTIEAD 131 (376)
T ss_pred HHHHHHCCCc-eEECCCCEECCCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEeC--CcEEEEECC----C-ceEEecC
Confidence 5567788865 33556667773 224478889999999999999999999999933 344554432 1 3469999
Q ss_pred EEEEccCCcc
Q psy14927 1001 ALLVCVGRRP 1010 (1074)
Q Consensus 1001 ~vi~a~G~~p 1010 (1074)
.||+|+|-.+
T Consensus 132 ~vIlAtGG~s 141 (376)
T TIGR03862 132 AVVLALGGAS 141 (376)
T ss_pred EEEEcCCCcc
Confidence 9999999865
No 497
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=87.54 E-value=4.8 Score=38.49 Aligned_cols=79 Identities=22% Similarity=0.146 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHhhCh--------h---hhhhHhhccCCHHHHHHHHHh-----cC---ChHHHHHH
Q psy14927 51 VLLKWWAQYIESTEDMDLAMKYYEEARDY--------L---SMVRVLCFLQDFSRAAELANA-----SG---DTAAAYHL 111 (1074)
Q Consensus 51 ~l~~~~a~~~e~~~~~~~A~~~y~~a~d~--------~---~~vr~l~~~~~~~~a~~i~~~-----~~---~~~~~~~l 111 (1074)
.++=+.|-..-+.|+.++|+.+|.++-.- . .+...|..+|++++|..+.++ ++ +......+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 44556677888999999999999986442 1 123337789999999888763 12 33444556
Q ss_pred HHHHHhcCChHHHHHHHH
Q psy14927 112 ARQYENSGQFDEAIHFYS 129 (1074)
Q Consensus 112 a~~~~~~g~~~~Ai~~y~ 129 (1074)
|--+...|..++|++.+.
T Consensus 82 Al~L~~~gr~~eAl~~~l 99 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWLL 99 (120)
T ss_pred HHHHHHCCCHHHHHHHHH
Confidence 666667777777776544
No 498
>KOG1173|consensus
Probab=87.52 E-value=2.8 Score=49.35 Aligned_cols=123 Identities=23% Similarity=0.356 Sum_probs=85.8
Q ss_pred cCCHHHHHHHHHHcCccc--chhhhHhhh-------cHHHHHHHhhc-----CCChHHHHHHHHHHHhccCHHHHHHHHH
Q psy14927 9 NGDIDRAIRMFEKAETHQ--QHVPRMLLE-------NTDKLEKYIIQ-----SKDPVLLKWWAQYIESTEDMDLAMKYYE 74 (1074)
Q Consensus 9 ~g~~~eA~~~Ye~~~~~~--~~~~~~~~~-------~~~~~~~~~~~-----~~~~~l~~~~a~~~e~~~~~~~A~~~y~ 74 (1074)
.|.-|.|+.-|-.+-+.- -..|.+|++ +...++.|..+ +++|-+..-.|=.+-..+.|.+|.++|.
T Consensus 359 e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~ 438 (611)
T KOG1173|consen 359 EGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQ 438 (611)
T ss_pred cchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHH
Confidence 344555555555553321 122666653 45667777766 6788888888888888888888888888
Q ss_pred HhhC---------------hhhhhhHhhccCCHHHHHHHHH-----hcCChHHHHHHHHHHHhcCChHHHHHHHHHh
Q psy14927 75 EARD---------------YLSMVRVLCFLQDFSRAAELAN-----ASGDTAAAYHLARQYENSGQFDEAIHFYSVA 131 (1074)
Q Consensus 75 ~a~d---------------~~~~vr~l~~~~~~~~a~~i~~-----~~~~~~~~~~la~~~~~~g~~~~Ai~~y~~a 131 (1074)
.+-. +.++-.++.+++..++|....+ .+++......+|-.|...|+++.||++|-+|
T Consensus 439 ~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKa 515 (611)
T KOG1173|consen 439 KALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKA 515 (611)
T ss_pred HHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 8761 2345556777888888877665 4677777778888888888888888888765
No 499
>KOG0543|consensus
Probab=87.39 E-value=1.8 Score=49.10 Aligned_cols=85 Identities=21% Similarity=0.224 Sum_probs=68.9
Q ss_pred hHHHHHHHHHHHhccCHHHHHHHHHHhhCh-----------------------hhhhhHhhccCCHHHHHHHHH-----h
Q psy14927 50 PVLLKWWAQYIESTEDMDLAMKYYEEARDY-----------------------LSMVRVLCFLQDFSRAAELAN-----A 101 (1074)
Q Consensus 50 ~~l~~~~a~~~e~~~~~~~A~~~y~~a~d~-----------------------~~~vr~l~~~~~~~~a~~i~~-----~ 101 (1074)
....+-.|..+-..|+|..|...|.+|-+| .++.-++..++.+.+|.+-|. +
T Consensus 208 A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~ 287 (397)
T KOG0543|consen 208 ADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD 287 (397)
T ss_pred HHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC
Confidence 345566688888899999999999886665 344555667888999988876 4
Q ss_pred cCChHHHHHHHHHHHhcCChHHHHHHHHHhCCh
Q psy14927 102 SGDTAAAYHLARQYENSGQFDEAIHFYSVAGSC 134 (1074)
Q Consensus 102 ~~~~~~~~~la~~~~~~g~~~~Ai~~y~~a~~~ 134 (1074)
+++.-+.|+-|+.+...|+++.|+..|.++...
T Consensus 288 ~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 288 PNNVKALYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 788899999999999999999999999887554
No 500
>PRK13984 putative oxidoreductase; Provisional
Probab=87.32 E-value=0.83 Score=56.90 Aligned_cols=21 Identities=14% Similarity=0.145 Sum_probs=18.9
Q ss_pred hhhhhhccccchHHHHHHHhh
Q psy14927 795 QVVLNTLGNCAAVQANYHLAT 815 (1074)
Q Consensus 795 ~~VviiGgG~AGl~aA~~la~ 815 (1074)
++|+|||||+.|+.+|..+++
T Consensus 419 k~VvVIGGG~~g~e~A~~l~r 439 (604)
T PRK13984 419 RSLVVIGGGNVAMDIARSMAR 439 (604)
T ss_pred CcEEEECCchHHHHHHHHHHh
Confidence 349999999999999999986
Done!