RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14927
(1074 letters)
>gnl|CDD|180409 PRK06115, PRK06115, dihydrolipoamide dehydrogenase; Reviewed.
Length = 466
Score = 262 bits (672), Expect = 1e-77
Identities = 121/263 (46%), Positives = 164/263 (62%), Gaps = 20/263 (7%)
Query: 827 KLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEVKT 886
LNL MM K +V+ALT G+ LF+ NKV + G G++ G V V DGS +++
Sbjct: 78 TLNLAQMMKQKDESVEALTKGVEFLFRKNKVDWIKGWGRLDGVGKVVVKAEDGSETQLEA 137
Query: 887 KNILIATGSEVTPFPGIEVDEETIVSSTGALSLKK-----------------GSVWGRLG 929
K+I+IATGSE TP PG+ +D + I+ STGALSL + GSVW RLG
Sbjct: 138 KDIVIATGSEPTPLPGVTIDNQRIIDSTGALSLPEVPKHLVVIGAGVIGLELGSVWRRLG 197
Query: 930 AEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVK 989
A+VT +E+++ I G D E AK Q+ L KQGM+FKLG+KVTGA+ D +++T+E
Sbjct: 198 AQVTVVEYLDRICP-GTDTETAKTLQKALTKQGMKFKLGSKVTGATAGADGVSLTLEPAA 256
Query: 990 DPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDC 1049
E L D +LV +GRRPYT LGLE +G+E D++G + N +T +P ++ IGD
Sbjct: 257 GGA-AETLQADYVLVAIGRRPYTQGLGLETVGLETDKRGML-ANDHHRTSVPGVWVIGDV 314
Query: 1050 IHGPMLAHKAEDEGIVCVEGIAG 1072
GPMLAHKAEDE + C+E IAG
Sbjct: 315 TSGPMLAHKAEDEAVACIERIAG 337
Score = 128 bits (324), Expect = 2e-31
Identities = 48/77 (62%), Positives = 60/77 (77%)
Query: 452 GIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAME 511
G YKVGKFPF ANSRAK N++T+GF K+L D TD+VLGVH++GP+ E+I E +AME
Sbjct: 371 GRAYKVGKFPFTANSRAKINHETEGFAKILADARTDEVLGVHMVGPSVSEMIGEFCVAME 430
Query: 512 YGASCEDVARTCHAHPT 528
+ AS ED+A TCH HPT
Sbjct: 431 FSASAEDIALTCHPHPT 447
Score = 90.7 bits (225), Expect = 6e-19
Identities = 43/80 (53%), Positives = 51/80 (63%), Gaps = 1/80 (1%)
Query: 528 TVCVEKNDTLGGTCLNVGCIPSKALLNNSHYYHMAHSGDMKARGIEVEGVKLNLETMMGT 587
CVE TLGGTCLNVGC+PSKALL+ S Y A G+ GIEV+ LNL MM
Sbjct: 29 VACVEGRSTLGGTCLNVGCMPSKALLHASELYEAASGGEFAHLGIEVKP-TLNLAQMMKQ 87
Query: 588 KSAAVKALTGGIAHLFKSNK 607
K +V+ALT G+ LF+ NK
Sbjct: 88 KDESVEALTKGVEFLFRKNK 107
>gnl|CDD|233368 TIGR01350, lipoamide_DH, dihydrolipoamide dehydrogenase. This model
describes dihydrolipoamide dehydrogenase, a flavoprotein
that acts in a number of ways. It is the E3 component of
dehydrogenase complexes for pyruvate, 2-oxoglutarate,
2-oxoisovalerate, and acetoin. It can also serve as the L
protein of the glycine cleavage system. This family
includes a few members known to have distinct functions
(ferric leghemoglobin reductase and NADH:ferredoxin
oxidoreductase) but that may be predicted by homology to
act as dihydrolipoamide dehydrogenase as well. The motif
GGXCXXXGCXP near the N-terminus contains a redox-active
disulfide.
Length = 460
Score = 261 bits (669), Expect = 3e-77
Identities = 107/268 (39%), Positives = 155/268 (57%), Gaps = 24/268 (8%)
Query: 825 GVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEV 884
V ++ E M K+ VK L GG++ L K NKVT + G K P TV+V +G E +
Sbjct: 72 NVSVDWEKMQKRKNKVVKKLVGGVSGLLKKNKVTVIKGEAKFLDPGTVSVTGENG-EETL 130
Query: 885 KTKNILIATGSEVTPFPG-IEVDEETIVSSTGALSLKK-----------------GSVWG 926
+ KNI+IATGS PG + D + +++STGAL+L++ S++
Sbjct: 131 EAKNIIIATGSRPRSLPGPFDFDGKVVITSTGALNLEEVPESLVIIGGGVIGVEFASIFA 190
Query: 927 RLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIE 986
LG++VT IE ++ I G D EV+K Q+ L K+G++ TKVT K+ D +T +
Sbjct: 191 SLGSKVTVIEMLDRILP-GEDAEVSKVLQKALKKKGVKILTNTKVTAVEKNDDQVTYENK 249
Query: 987 NVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAI 1046
+ E L+ + +LV VGR+P T LGLE++G+E DE+GR+ V+ +T +P I+AI
Sbjct: 250 G----GETETLTGEKVLVAVGRKPNTEGLGLEKLGVELDERGRIVVDEYMRTNVPGIYAI 305
Query: 1047 GDCIHGPMLAHKAEDEGIVCVEGIAGDK 1074
GD I GPMLAH A EGIV E IAG +
Sbjct: 306 GDVIGGPMLAHVASHEGIVAAENIAGKE 333
Score = 123 bits (311), Expect = 1e-29
Identities = 45/78 (57%), Positives = 58/78 (74%)
Query: 452 GIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAME 511
G + K+GKFPFAAN +A +TDGFVK++ DK T ++LG HIIGP A ELI+EA LAME
Sbjct: 366 GYDVKIGKFPFAANGKALALGETDGFVKIIADKKTGEILGAHIIGPHATELISEAALAME 425
Query: 512 YGASCEDVARTCHAHPTV 529
+ E++ART H HPT+
Sbjct: 426 LEGTVEELARTIHPHPTL 443
Score = 104 bits (262), Expect = 2e-23
Identities = 40/82 (48%), Positives = 53/82 (64%), Gaps = 5/82 (6%)
Query: 528 TVCVEKNDTLGGTCLNVGCIPSKALLNNSHYYH-MAHSGDMKARGIEVEGVKLNLETMMG 586
VEK + LGGTCLNVGCIP+KALL+++ Y + H+ D+ GIEVE V ++ E M
Sbjct: 27 VALVEK-EYLGGTCLNVGCIPTKALLHSAEVYDEIKHAKDL---GIEVENVSVDWEKMQK 82
Query: 587 TKSAAVKALTGGIAHLFKSNKA 608
K+ VK L GG++ L K NK
Sbjct: 83 RKNKVVKKLVGGVSGLLKKNKV 104
>gnl|CDD|235779 PRK06327, PRK06327, dihydrolipoamide dehydrogenase; Validated.
Length = 475
Score = 258 bits (661), Expect = 5e-76
Identities = 108/286 (37%), Positives = 151/286 (52%), Gaps = 24/286 (8%)
Query: 810 NYHLATKLFTQAG--DKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKIT 867
+ A F G GVK+++ M+ K VK +TGGI LFK NK+T L G G
Sbjct: 66 EFENAGHHFADHGIHVDGVKIDVAKMIARKDKVVKKMTGGIEGLFKKNKITVLKGRGSFV 125
Query: 868 GPNTV-TVIKSDG-STEEVKTKNILIATGSEVTPFPGIEVDEETIVSSTGALSLKK---- 921
G IK G + K+++IATGSE PG+ D + I+ +TGAL+ +
Sbjct: 126 GKTDAGYEIKVTGEDETVITAKHVIIATGSEPRHLPGVPFDNKIILDNTGALNFTEVPKK 185
Query: 922 -------------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLG 968
GSVW RLGAEVT +E + A D +VAK+ + KQG+ LG
Sbjct: 186 LAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLAA-ADEQVAKEAAKAFTKQGLDIHLG 244
Query: 969 TKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKG 1028
K+ G ++V + + E D L+V +GR P T LGLE +G++ DE+G
Sbjct: 245 VKIGEIKTGGKGVSVAYTDADGEAQTLE--VDKLIVSIGRVPNTDGLGLEAVGLKLDERG 302
Query: 1029 RVPVNSRFQTVIPNIFAIGDCIHGPMLAHKAEDEGIVCVEGIAGDK 1074
+PV+ +T +PN++AIGD + GPMLAHKAE+EG+ E IAG K
Sbjct: 303 FIPVDDHCRTNVPNVYAIGDVVRGPMLAHKAEEEGVAVAERIAGQK 348
Score = 134 bits (339), Expect = 4e-33
Identities = 50/77 (64%), Positives = 60/77 (77%)
Query: 452 GIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAME 511
G+EYK GKFPF AN RA + DGFVK++ D TD++LGVH+IGP A ELI EAV+AME
Sbjct: 380 GVEYKAGKFPFMANGRALAMGEPDGFVKIIADAKTDEILGVHVIGPNASELIAEAVVAME 439
Query: 512 YGASCEDVARTCHAHPT 528
+ AS ED+AR CHAHPT
Sbjct: 440 FKASSEDIARICHAHPT 456
Score = 101 bits (254), Expect = 2e-22
Identities = 40/86 (46%), Positives = 49/86 (56%), Gaps = 7/86 (8%)
Query: 528 TVCVEKNDT------LGGTCLNVGCIPSKALLNNSHYYHMAHSGDMKARGIEVEGVKLNL 581
C+E LGGTCLNVGCIPSKALL +S + A GI V+GVK+++
Sbjct: 30 VACIEAWKNPKGKPALGGTCLNVGCIPSKALLASSEEFENAGH-HFADHGIHVDGVKIDV 88
Query: 582 ETMMGTKSAAVKALTGGIAHLFKSNK 607
M+ K VK +TGGI LFK NK
Sbjct: 89 AKMIARKDKVVKKMTGGIEGLFKKNK 114
>gnl|CDD|224169 COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex,
dihydrolipoamide dehydrogenase (E3) component, and
related enzymes [Energy production and conversion].
Length = 454
Score = 255 bits (654), Expect = 3e-75
Identities = 98/268 (36%), Positives = 142/268 (52%), Gaps = 24/268 (8%)
Query: 824 KGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEE 883
+ K++ E ++ K V+ LTGG+ L K N V + G + P+TV V E
Sbjct: 76 EVPKIDFEKLLARKDKVVRLLTGGVEGLLKKNGVDVIRGEARFVDPHTVEVT--GEDKET 133
Query: 884 VKTKNILIATGSEVTPFPGIEVDEETIVSSTGALSLKK-----------------GSVWG 926
+ NI+IATGS PG +D I+ S+ AL L + SV+
Sbjct: 134 ITADNIIIATGSRPRIPPGPGIDGARILDSSDALFLLELPKSLVIVGGGYIGLEFASVFA 193
Query: 927 RLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIE 986
LG++VT +E + I G D E++K+ + L K G++ L TKVT K D + VT+E
Sbjct: 194 ALGSKVTVVERGDRILP-GEDPEISKELTKQLEKGGVKILLNTKVTAVEKKDDGVLVTLE 252
Query: 987 NVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAI 1046
+ + T + DA+LV +GR+P T LGLE G+E D++G + V+ + T +P I+AI
Sbjct: 253 DGEGGT----IEADAVLVAIGRKPNTDGLGLENAGVELDDRGFIKVDDQMTTNVPGIYAI 308
Query: 1047 GDCIHGPMLAHKAEDEGIVCVEGIAGDK 1074
GD I GPMLAH A EG + E IAG K
Sbjct: 309 GDVIGGPMLAHVAMAEGRIAAENIAGGK 336
Score = 121 bits (305), Expect = 6e-29
Identities = 51/79 (64%), Positives = 62/79 (78%)
Query: 452 GIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAME 511
GI+YKVGKFPFAAN RA T +TDGFVK++ DK T ++LG HI+GP A ELINE LA+E
Sbjct: 369 GIDYKVGKFPFAANGRAITMGETDGFVKLVVDKETGRILGAHIVGPGASELINEIALAIE 428
Query: 512 YGASCEDVARTCHAHPTVC 530
GA+ ED+A T HAHPT+
Sbjct: 429 MGATAEDLALTIHAHPTLS 447
Score = 90.3 bits (225), Expect = 8e-19
Identities = 36/80 (45%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 528 TVCVEKNDTLGGTCLNVGCIPSKALLNNSHYYHMAHSGDMKARGIEVEGVKLNLETMMGT 587
VEK + LGGTCLNVGCIPSKALL+ + A K GI E K++ E ++
Sbjct: 30 VALVEKGERLGGTCLNVGCIPSKALLHAAEVIEEARHAA-KEYGISAEVPKIDFEKLLAR 88
Query: 588 KSAAVKALTGGIAHLFKSNK 607
K V+ LTGG+ L K N
Sbjct: 89 KDKVVRLLTGGVEGLLKKNG 108
>gnl|CDD|180579 PRK06467, PRK06467, dihydrolipoamide dehydrogenase; Reviewed.
Length = 471
Score = 241 bits (618), Expect = 5e-70
Identities = 104/268 (38%), Positives = 141/268 (52%), Gaps = 21/268 (7%)
Query: 824 KGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEE 883
K++++ M K VK LTGG+A + K KVT +NG GK TG NT+ V DG T
Sbjct: 75 GEPKIDIDKMRARKEKVVKQLTGGLAGMAKGRKVTVVNGLGKFTGGNTLEVTGEDGKTTV 134
Query: 884 VKTKNILIATGSEVTPFPGIEVDEETIVSSTGALSLKK-----------------GSVWG 926
++ N +IA GS P I D+ I ST AL LK+ G+V+
Sbjct: 135 IEFDNAIIAAGSRPIQLPFIPHDDPRIWDSTDALELKEVPKRLLVMGGGIIGLEMGTVYH 194
Query: 927 RLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIE 986
RLG+EV +E + + D ++ K F + + KQ L TKVT D I VT+E
Sbjct: 195 RLGSEVDVVEMFDQVIPAA-DKDIVKVFTKRIKKQ-FNIMLETKVTAVEAKEDGIYVTME 252
Query: 987 NVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAI 1046
K P + + DA+LV VGR P L E+ G+E DE+G + V+ + +T +P+IFAI
Sbjct: 253 GKKAPAEPQRY--DAVLVAVGRVPNGKLLDAEKAGVEVDERGFIRVDKQCRTNVPHIFAI 310
Query: 1047 GDCIHGPMLAHKAEDEGIVCVEGIAGDK 1074
GD + PMLAHK EG V E IAG K
Sbjct: 311 GDIVGQPMLAHKGVHEGHVAAEVIAGKK 338
Score = 118 bits (297), Expect = 8e-28
Identities = 39/78 (50%), Positives = 52/78 (66%)
Query: 452 GIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAME 511
GIEY+ FP+AA+ RA ++ DG K++ DK T +VLG I+G AGEL+ E LA+E
Sbjct: 370 GIEYETATFPWAASGRAIASDCADGMTKLIFDKETHRVLGGAIVGTNAGELLGEIGLAIE 429
Query: 512 YGASCEDVARTCHAHPTV 529
G ED+A T HAHPT+
Sbjct: 430 MGCDAEDIALTIHAHPTL 447
Score = 103 bits (260), Expect = 4e-23
Identities = 37/80 (46%), Positives = 47/80 (58%), Gaps = 2/80 (2%)
Query: 528 TVCVEKNDTLGGTCLNVGCIPSKALLNNSHYYHMAHSGDMKARGIEVEGVKLNLETMMGT 587
TVCVE+ TLGG CLNVGCIPSKALL+ + A + GI K++++ M
Sbjct: 30 TVCVERYSTLGGVCLNVGCIPSKALLHVAKVIEEAK--ALAEHGIVFGEPKIDIDKMRAR 87
Query: 588 KSAAVKALTGGIAHLFKSNK 607
K VK LTGG+A + K K
Sbjct: 88 KEKVVKQLTGGLAGMAKGRK 107
>gnl|CDD|235798 PRK06416, PRK06416, dihydrolipoamide dehydrogenase; Reviewed.
Length = 462
Score = 237 bits (607), Expect = 1e-68
Identities = 107/252 (42%), Positives = 147/252 (58%), Gaps = 25/252 (9%)
Query: 841 VKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEVKTKNILIATGSEVTPF 900
V LTGG+ L K NKV + G K+ PNTV V+ DG + KNI++ATGS
Sbjct: 91 VNRLTGGVEGLLKKNKVDIIRGEAKLVDPNTVRVMTEDG-EQTYTAKNIILATGSRPREL 149
Query: 901 PGIEVDEETIVSSTGALSLKK-----------------GSVWGRLGAEVTAIEFMNAIGG 943
PGIE+D I +S AL+L + S + LGAEVT +E + I
Sbjct: 150 PGIEIDGRVIWTSDEALNLDEVPKSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRI-- 207
Query: 944 M-GIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDAL 1002
+ G D E++K +R L K+G++ K G K ++ D +TVT+E D K+E L D +
Sbjct: 208 LPGEDKEISKLAERALKKRGIKIKTGAKAKKVEQTDDGVTVTLE---DGGKEETLEADYV 264
Query: 1003 LVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGPMLAHKAEDE 1062
LV VGRRP T NLGLEE+G++ D +G + V+ + +T +PNI+AIGD + GPMLAHKA E
Sbjct: 265 LVAVGRRPNTENLGLEELGVKTD-RGFIEVDEQLRTNVPNIYAIGDIVGGPMLAHKASAE 323
Query: 1063 GIVCVEGIAGDK 1074
GI+ E IAG+
Sbjct: 324 GIIAAEAIAGNP 335
Score = 110 bits (277), Expect = 3e-25
Identities = 40/77 (51%), Positives = 52/77 (67%)
Query: 452 GIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAME 511
G + KV KFPFA N +A +TDGFVK++ DK +VLG H++G A ELI EA LA+
Sbjct: 367 GFDVKVVKFPFAGNGKALALGETDGFVKLIFDKKDGEVLGAHMVGARASELIQEAQLAIN 426
Query: 512 YGASCEDVARTCHAHPT 528
+ A+ ED+A T H HPT
Sbjct: 427 WEATPEDLALTIHPHPT 443
Score = 82.1 bits (204), Expect = 3e-16
Identities = 36/81 (44%), Positives = 46/81 (56%), Gaps = 5/81 (6%)
Query: 528 TVCVEKNDTLGGTCLNVGCIPSKALLNNSHYYH-MAHSGDMKARGIEVEGVKLNLETMMG 586
VEK + LGGTCLN GCIPSKALL+ + HS D GI+ E V ++ + +
Sbjct: 30 VAIVEK-EKLGGTCLNRGCIPSKALLHAAERADEARHSEDF---GIKAENVGIDFKKVQE 85
Query: 587 TKSAAVKALTGGIAHLFKSNK 607
K+ V LTGG+ L K NK
Sbjct: 86 WKNGVVNRLTGGVEGLLKKNK 106
>gnl|CDD|235774 PRK06292, PRK06292, dihydrolipoamide dehydrogenase; Validated.
Length = 460
Score = 235 bits (603), Expect = 4e-68
Identities = 99/269 (36%), Positives = 135/269 (50%), Gaps = 29/269 (10%)
Query: 825 GVKLNLETMMGTKSAAVKALTGGIAH-LFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEE 883
G K++ + +M GG+ L K K+ ++ G + PNTV V + E
Sbjct: 74 GPKIDFKKVMARVRRERDRFVGGVVEGLEKKPKIDKIKGTARFVDPNTVEV-----NGER 128
Query: 884 VKTKNILIATGSEVTPFPGIE-VDEETIVSSTGALSLKK-----------------GSVW 925
++ KNI+IATGS V P PG+ + + +++S A L K G
Sbjct: 129 IEAKNIVIATGSRVPPIPGVWLILGDRLLTSDDAFELDKLPKSLAVIGGGVIGLELGQAL 188
Query: 926 GRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTI 985
RLG +VT E + I D EV+KQ Q+IL K+ + KLG KVT KSGD +
Sbjct: 189 SRLGVKVTVFERGDRILP-LEDPEVSKQAQKILSKE-FKIKLGAKVTSVEKSGDEK---V 243
Query: 986 ENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFA 1045
E ++ K E + D +LV GRRP T LGLE GIE DE+GR V+ QT +P I+A
Sbjct: 244 EELEKGGKTETIEADYVLVATGRRPNTDGLGLENTGIELDERGRPVVDEHTQTSVPGIYA 303
Query: 1046 IGDCIHGPMLAHKAEDEGIVCVEGIAGDK 1074
GD P L H+A DEG + E AGD
Sbjct: 304 AGDVNGKPPLLHEAADEGRIAAENAAGDV 332
Score = 119 bits (301), Expect = 2e-28
Identities = 38/78 (48%), Positives = 48/78 (61%)
Query: 452 GIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAME 511
GI+Y VG+ PF A RA+ DGFVKV DK T ++LG HIIGP A LI+ AM+
Sbjct: 365 GIDYVVGEVPFEAQGRARVMGKNDGFVKVYADKKTGRLLGAHIIGPDAEHLIHLLAWAMQ 424
Query: 512 YGASCEDVARTCHAHPTV 529
G + ED+ R HPT+
Sbjct: 425 QGLTVEDLLRMPFYHPTL 442
Score = 76.0 bits (188), Expect = 3e-14
Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 3/85 (3%)
Query: 528 TVCVEKNDTLGGTCLNVGCIPSKALLNNSHYYHMAHSGDMKARGIEVEGVKLNLETMMGT 587
+EK LGGTCLNVGCIPSKAL+ + +H A + GI +G K++ + +M
Sbjct: 29 VALIEK-GPLGGTCLNVGCIPSKALIAAAEAFHEAKHAE--EFGIHADGPKIDFKKVMAR 85
Query: 588 KSAAVKALTGGIAHLFKSNKALKII 612
GG+ + + I
Sbjct: 86 VRRERDRFVGGVVEGLEKKPKIDKI 110
>gnl|CDD|235660 PRK05976, PRK05976, dihydrolipoamide dehydrogenase; Validated.
Length = 472
Score = 190 bits (484), Expect = 4e-52
Identities = 93/274 (33%), Positives = 131/274 (47%), Gaps = 28/274 (10%)
Query: 825 GVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGP-------NTVTVIKS 877
G L+ + K V LT G+A L K K+ +G G+I GP TV+V
Sbjct: 75 GPALDFAKVQERKDGIVDRLTKGVAALLKKGKIDVFHGIGRILGPSIFSPMPGTVSVETE 134
Query: 878 DGSTEEVKTKNILIATGSEVTPFPGIEVDEETIVSSTGALSLKK---------------- 921
G E + +N+LIATGS PG+ D E ++SS ALSL+
Sbjct: 135 TGENEMIIPENLLIATGSRPVELPGLPFDGEYVISSDEALSLETLPKSLVIVGGGVIGLE 194
Query: 922 -GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDN 980
S+ G EVT +E + I D E++K+ R+L K G++ G KV G + D
Sbjct: 195 WASMLADFGVEVTVVEAADRILP-TEDAELSKEVARLLKKLGVRVVTGAKVLGLTLKKDG 253
Query: 981 ITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVI 1040
+ + +++ L D +LV VGRRP T +GLE I+ E G + ++ QT
Sbjct: 254 GVLIVAEHNG--EEKTLEADKVLVSVGRRPNTEGIGLENTDIDV-EGGFIQIDDFCQTKE 310
Query: 1041 PNIFAIGDCIHGPMLAHKAEDEGIVCVEGIAGDK 1074
+I+AIGD I P LAH A EG + E IAG K
Sbjct: 311 RHIYAIGDVIGEPQLAHVAMAEGEMAAEHIAGKK 344
Score = 107 bits (269), Expect = 3e-24
Identities = 42/77 (54%), Positives = 53/77 (68%)
Query: 452 GIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAME 511
G + KVGKFPFAAN +A T ++DGFVKV+ D+ T +LGV +GP ELI+E LA+E
Sbjct: 377 GYDVKVGKFPFAANGKALTYGESDGFVKVVADRDTHDILGVQAVGPHVTELISEFALALE 436
Query: 512 YGASCEDVARTCHAHPT 528
GA +VA T H HPT
Sbjct: 437 LGARLWEVAGTIHPHPT 453
Score = 83.8 bits (208), Expect = 1e-16
Identities = 34/82 (41%), Positives = 43/82 (52%), Gaps = 5/82 (6%)
Query: 527 PTVCVEKNDTLGGTCLNVGCIPSKALLNNSHYYHMA-HSGDMKARGIEVEGVKLNLETMM 585
T VEK LGGTCL+ GCIPSKALL+++ + A + GI V G L+ +
Sbjct: 29 KTALVEK-GKLGGTCLHKGCIPSKALLHSAEVFQTAKKASPF---GISVSGPALDFAKVQ 84
Query: 586 GTKSAAVKALTGGIAHLFKSNK 607
K V LT G+A L K K
Sbjct: 85 ERKDGIVDRLTKGVAALLKKGK 106
>gnl|CDD|236106 PRK07818, PRK07818, dihydrolipoamide dehydrogenase; Reviewed.
Length = 466
Score = 158 bits (401), Expect = 3e-41
Identities = 82/242 (33%), Positives = 124/242 (51%), Gaps = 19/242 (7%)
Query: 847 GIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGIEVD 906
G+ L K NK+T+++G+G T NT+ V +DG TE V N +IATGS PG +
Sbjct: 97 GVHFLMKKNKITEIHGYGTFTDANTLEVDLNDGGTETVTFDNAIIATGSSTRLLPGTSLS 156
Query: 907 ------EETIVSST----------GALSLKKGSVWGRLGAEVTAIEFMNAIGGMGIDGEV 950
EE I+S GA+ ++ V G +VT +EF++ D EV
Sbjct: 157 ENVVTYEEQILSRELPKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRALPNE-DAEV 215
Query: 951 AKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRP 1010
+K+ + K G++ GTKV +G +TVT+ K K +EL D +L +G P
Sbjct: 216 SKEIAKQYKKLGVKILTGTKVESIDDNGSKVTVTVS--KKDGKAQELEADKVLQAIGFAP 273
Query: 1011 YTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGPMLAHKAEDEGIVCVEGI 1070
GLE+ G+ ++G + ++ +T +P+I+AIGD LAH AE +G+V E I
Sbjct: 274 RVEGYGLEKTGVALTDRGAIAIDDYMRTNVPHIYAIGDVTAKLQLAHVAEAQGVVAAETI 333
Query: 1071 AG 1072
AG
Sbjct: 334 AG 335
Score = 82.4 bits (204), Expect = 3e-16
Identities = 34/77 (44%), Positives = 47/77 (61%)
Query: 452 GIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAME 511
G + KV KFPF AN +A D GFVK++ D ++LG H+IGP EL+ E LA +
Sbjct: 371 GYDVKVAKFPFTANGKAHGLGDPTGFVKLVADAKYGELLGGHLIGPDVSELLPELTLAQK 430
Query: 512 YGASCEDVARTCHAHPT 528
+ + E++AR H HPT
Sbjct: 431 WDLTAEELARNVHTHPT 447
Score = 48.1 bits (115), Expect = 2e-05
Identities = 21/38 (55%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 538 GGTCLNVGCIPSKALLNNSHYYHMAHSGDMKARGIEVE 575
GG CLNVGCIPSKALL N+ H+ + K GI E
Sbjct: 39 GGVCLNVGCIPSKALLRNAELAHIFTK-EAKTFGISGE 75
>gnl|CDD|235373 PRK05249, PRK05249, soluble pyridine nucleotide transhydrogenase;
Provisional.
Length = 461
Score = 142 bits (360), Expect = 8e-36
Identities = 67/247 (27%), Positives = 108/247 (43%), Gaps = 32/247 (12%)
Query: 848 IAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEVKTKNILIATGSEVTPF--PGIEV 905
++ N+V + G + P+TV V DG E + I+IATGS P+ P ++
Sbjct: 100 RRGQYERNRVDLIQGRARFVDPHTVEVECPDGEVETLTADKIVIATGSR--PYRPPDVDF 157
Query: 906 DEETIVSSTGALSLKK--GS--VWGRLGAEVTAIEFMNAIGGMG---------------I 946
D I S LSL S + GA V E+ + +G +
Sbjct: 158 DHPRIYDSDSILSLDHLPRSLII---YGAGVIGCEYASIFAALGVKVTLINTRDRLLSFL 214
Query: 947 DGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCV 1006
D E++ L G+ + +V D + V +++ K ++ D LL
Sbjct: 215 DDEISDALSYHLRDSGVTIRHNEEVEKVEGGDDGVIVHLKSGK------KIKADCLLYAN 268
Query: 1007 GRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGPMLAHKAEDEGIVC 1066
GR T L LE G+E D +G++ VN +QT +P+I+A+GD I P LA + D+G +
Sbjct: 269 GRTGNTDGLNLENAGLEADSRGQLKVNENYQTAVPHIYAVGDVIGFPSLASASMDQGRIA 328
Query: 1067 VEGIAGD 1073
+ G+
Sbjct: 329 AQHAVGE 335
Score = 47.8 bits (115), Expect = 3e-05
Identities = 19/52 (36%), Positives = 30/52 (57%)
Query: 452 GIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELI 503
+ Y+VG+ F +RA+ D G +K+L + T ++LGVH G A E+I
Sbjct: 368 KVPYEVGRARFKELARAQIAGDNVGMLKILFHRETLEILGVHCFGERATEII 419
Score = 43.2 bits (103), Expect = 7e-04
Identities = 16/48 (33%), Positives = 26/48 (54%)
Query: 405 EGIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPG 452
+ Y+VG+ F +RA+ D G +K+L + T ++LGVH G
Sbjct: 367 AKVPYEVGRARFKELARAQIAGDNVGMLKILFHRETLEILGVHCFGER 414
Score = 38.2 bits (90), Expect = 0.019
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 531 VEKNDTLGGTCLNVGCIPSKAL 552
+E+ +GG C + G IPSKAL
Sbjct: 34 IERYRNVGGGCTHTGTIPSKAL 55
>gnl|CDD|180743 PRK06912, acoL, dihydrolipoamide dehydrogenase; Validated.
Length = 458
Score = 137 bits (346), Expect = 4e-34
Identities = 77/269 (28%), Positives = 115/269 (42%), Gaps = 32/269 (11%)
Query: 821 AGDKGVKLNLET-------MMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVT 873
A G+ L + M KS V L GI +L K NK+ + G + V
Sbjct: 62 ANHFGITLPNGSISIDWKQMQARKSQIVTQLVQGIQYLMKKNKIKVIQGKASFETDHRVR 121
Query: 874 VIKSDGSTEEVKTKNILIATGSEVTPFPGIEVDEETIVSSTGALSLKK------------ 921
V + E V + +IA GSE T P D + I++S A+SL
Sbjct: 122 V-EYGDKEEVVDAEQFIIAAGSEPTELPFAPFDGKWIINSKHAMSLPSIPSSLLIVGGGV 180
Query: 922 -----GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASK 976
S++ RLG +VT +E + G D ++A + L G++ G + G +
Sbjct: 181 IGCEFASIYSRLGTKVTIVEMAPQLL-PGEDEDIAHILREKLENDGVKIFTGAALKGLNS 239
Query: 977 SGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRF 1036
E +E++ + +LV VGR+P L LE+ G++ KG + VN
Sbjct: 240 --YKKQALFEY---EGSIQEVNAEFVLVSVGRKPRVQQLNLEKAGVQFSNKG-ISVNEHM 293
Query: 1037 QTVIPNIFAIGDCIHGPMLAHKAEDEGIV 1065
QT +P+I+A GD I G LAH A EG
Sbjct: 294 QTNVPHIYACGDVIGGIQLAHVAFHEGTT 322
Score = 62.8 bits (153), Expect = 6e-10
Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 7/80 (8%)
Query: 537 LGGTCLNVGCIPSKALLNNSHYY-HMAHSGDMKARGIEV--EGVKLNLETMMGTKSAAVK 593
LGGTCLN GC+P+K+LL ++ + + + GI + + ++ + M KS V
Sbjct: 34 LGGTCLNEGCMPTKSLLESAEVHDKVKKANHF---GITLPNGSISIDWKQMQARKSQIVT 90
Query: 594 ALTGGIAHLFKSNKALKIIT 613
L GI +L K NK +K+I
Sbjct: 91 QLVQGIQYLMKKNK-IKVIQ 109
Score = 54.7 bits (132), Expect = 2e-07
Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Query: 456 KVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAMEYGAS 515
++G+FPF AN +A + G VKV+ + +++G+ IIGP A ELI + + M +
Sbjct: 367 RIGEFPFTANGKALIIGEQTGKVKVIVEPKYQEIVGISIIGPRATELIGQGTV-MIHTEV 425
Query: 516 CEDVART-CHAHPTV 529
D+ AHPT+
Sbjct: 426 TADIMEDFIAAHPTL 440
Score = 40.5 bits (95), Expect = 0.005
Identities = 16/43 (37%), Positives = 27/43 (62%)
Query: 410 KVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPG 452
++G+FPF AN +A + G VKV+ + +++G+ IIGP
Sbjct: 367 RIGEFPFTANGKALIIGEQTGKVKVIVEPKYQEIVGISIIGPR 409
>gnl|CDD|235787 PRK06370, PRK06370, mercuric reductase; Validated.
Length = 463
Score = 132 bits (335), Expect = 1e-32
Identities = 70/227 (30%), Positives = 107/227 (47%), Gaps = 27/227 (11%)
Query: 857 VTQLNGHGKITGPNTVTVIKSDGSTEEVKTKNILIATGSE--VTPFPGIE----VDEETI 910
V GH + PNTV V G E ++ K I I TG+ + P PG++ + ETI
Sbjct: 110 VDVFRGHARFESPNTVRV---GG--ETLRAKRIFINTGARAAIPPIPGLDEVGYLTNETI 164
Query: 911 VSST-----------GALSLKKGSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILG 959
S G + L+ ++ R G+EVT IE + D +VA + IL
Sbjct: 165 FSLDELPEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLP-REDEDVAAAVREILE 223
Query: 960 KQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEE 1019
++G+ +L + + GD I V ++ E++ +LV VGR P T +LGLE
Sbjct: 224 REGIDVRLNAECIRVERDGDGIAVGLDC---NGGAPEITGSHILVAVGRVPNTDDLGLEA 280
Query: 1020 IGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGPMLAHKAEDEG-IV 1065
G+E D +G + V+ + +T P I+A GDC H A ++ IV
Sbjct: 281 AGVETDARGYIKVDDQLRTTNPGIYAAGDCNGRGAFTHTAYNDARIV 327
Score = 82.2 bits (204), Expect = 4e-16
Identities = 31/78 (39%), Positives = 42/78 (53%)
Query: 452 GIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAME 511
G VG P RA +T GF+KV+ D TD++LG I+G E+I+E + AM
Sbjct: 368 GRRVLVGTRPMTRVGRAVEKGETQGFMKVVVDADTDRILGATILGVHGDEMIHEILDAMY 427
Query: 512 YGASCEDVARTCHAHPTV 529
GA ++R H HPTV
Sbjct: 428 AGAPYTTLSRAIHIHPTV 445
Score = 49.8 bits (120), Expect = 6e-06
Identities = 14/32 (43%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
Query: 531 VEKNDTLGGTCLNVGCIPSKALLNNSHYYHMA 562
+E+ LGGTC+N GC+P+K L+ ++ H+A
Sbjct: 34 IERGL-LGGTCVNTGCVPTKTLIASARAAHLA 64
>gnl|CDD|217252 pfam02852, Pyr_redox_dim, Pyridine nucleotide-disulphide
oxidoreductase, dimerisation domain. This family
includes both class I and class II oxidoreductases and
also NADH oxidases and peroxidases.
Length = 110
Score = 120 bits (303), Expect = 5e-32
Identities = 46/77 (59%), Positives = 56/77 (72%)
Query: 452 GIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAME 511
G E KVGKFPF AN RA +T GFVK++ D T ++LG HI+GP AGELI EA LA++
Sbjct: 25 GGEVKVGKFPFKANGRALAYGETKGFVKLVADAETGRILGAHIVGPNAGELIQEAALAIK 84
Query: 512 YGASCEDVARTCHAHPT 528
GA+ ED+A T HAHPT
Sbjct: 85 MGATVEDLANTIHAHPT 101
>gnl|CDD|219686 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide
oxidoreductase. This family includes both class I and
class II oxidoreductases and also NADH oxidases and
peroxidases. This domain is actually a small NADH binding
domain within a larger FAD binding domain.
Length = 283
Score = 123 bits (311), Expect = 4e-31
Identities = 59/230 (25%), Positives = 91/230 (39%), Gaps = 34/230 (14%)
Query: 845 TGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEVKTKNILIATGSEVT--PFPG 902
G+ L + V G + + T E+ ++IATG+ PG
Sbjct: 68 EFGVEVLLGTEVVDIDRGEKTVVLKDVET-------GREITYDKLIIATGARPRIPGIPG 120
Query: 903 IEVDEE-TIVSSTGALSLKK-----------------GSVWGRLGAEVTAIEFMNAIGGM 944
+EV ++ S L L + + +LG EVT +E + +
Sbjct: 121 VEVATLRGVIDSDEILELLELPKRVVVVGGGYIGLELAAALAKLGKEVTVVERRDRLLAR 180
Query: 945 GIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLV 1004
D E++ L K + + V K GD + VK EEL D +LV
Sbjct: 181 ADD-EISAALLEKLEKLLLGVTVLLVVVVVVKVGD---GKVVEVKL-GDGEELDADVVLV 235
Query: 1005 CVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGPM 1054
+GRRP T LE+ G+E DE+G + V+ +T +P I+A GD G
Sbjct: 236 AIGRRPNT--ELLEQAGVELDERGYIVVDEYLRTSVPGIYAAGDVAEGKP 283
Score = 44.7 bits (106), Expect = 1e-04
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Query: 526 HPTVCVEKNDTLGGTCLNVGCIPSKALLNNSHYYHMAHSGDMKARGIEVEGVKLNLET 583
+E+ GGTC N GC+P K LL + +A + + GV++ L T
Sbjct: 23 LKVALIER---EGGTCYNRGCLPKKLLLEVAEGLELAIGLALPEEVYKEFGVEVLLGT 77
>gnl|CDD|215281 PLN02507, PLN02507, glutathione reductase.
Length = 499
Score = 120 bits (302), Expect = 2e-28
Identities = 79/245 (32%), Positives = 110/245 (44%), Gaps = 34/245 (13%)
Query: 825 GVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEV 884
V N + ++ K+ + L G L + V G GKI GPN V V + DG+
Sbjct: 107 KVDFNWKKLLQKKTDEILRLNGIYKRLLANAGVKLYEGEGKIVGPNEVEVTQLDGTKLRY 166
Query: 885 KTKNILIATGSEVTP--FPGIEVDEETIVSSTGALSL----KKGSVWGRLGAEVTAIEFM 938
K+ILIATGS PG +E ++S ALSL K+ V LG A+EF
Sbjct: 167 TAKHILIATGSRAQRPNIPG----KELAITSDEALSLEELPKRAVV---LGGGYIAVEFA 219
Query: 939 NAIGGMG---------------IDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITV 983
+ GMG D E+ R L +G+ T +T +K+ I V
Sbjct: 220 SIWRGMGATVDLFFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTNLTQLTKTEGGIKV 279
Query: 984 TIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNI 1043
++ EE D +L GR P T L LE +G+E D+ G V V+ +T IP+I
Sbjct: 280 ITDH------GEEFVADVVLFATGRAPNTKRLNLEAVGVELDKAGAVKVDEYSRTNIPSI 333
Query: 1044 FAIGD 1048
+AIGD
Sbjct: 334 WAIGD 338
Score = 39.0 bits (91), Expect = 0.012
Identities = 19/56 (33%), Positives = 30/56 (53%)
Query: 477 FVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAMEYGASCEDVARTCHAHPTVCVE 532
+K++ D TDKVLG + GP A E++ +A++ GA+ T HP+ E
Sbjct: 423 VMKLIVDAETDKVLGASMCGPDAPEIMQGIAVALKCGATKAQFDSTVGIHPSAAEE 478
Score = 31.7 bits (72), Expect = 2.6
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 5/88 (5%)
Query: 526 HPTVCVEKNDTLGGTCLNVGCIPSKALLNNSHYYHMAHSGDMKARGIEV-EGVKLNLETM 584
HP + E +GGTC+ GC+P K L+ + + D K G E+ E V N + +
Sbjct: 59 HP-ISSESIGGVGGTCVIRGCVPKKILVYGATF--GGEFEDAKNYGWEINEKVDFNWKKL 115
Query: 585 MGTKSAAVKALTGGIAHLFKSNKALKII 612
+ K+ + L G L +N +K+
Sbjct: 116 LQKKTDEILRLNGIYKRLL-ANAGVKLY 142
>gnl|CDD|235701 PRK06116, PRK06116, glutathione reductase; Validated.
Length = 450
Score = 117 bits (297), Expect = 7e-28
Identities = 67/249 (26%), Positives = 111/249 (44%), Gaps = 36/249 (14%)
Query: 827 KLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEVKT 886
K + ++ + A + L G + ++N V + G + +TV V +G E
Sbjct: 78 KFDWAKLIANRDAYIDRLHGSYRNGLENNGVDLIEGFARFVDAHTVEV---NG--ERYTA 132
Query: 887 KNILIATGSEVTPFPGIEVDEETIVSSTGALSL----KKGSVWGRLGAEVTAIEF---MN 939
+ILIATG + P I E I +S G +L K+ +V G A A+EF +N
Sbjct: 133 DHILIATGGRPSI-PDIPGAEYGI-TSDGFFALEELPKRVAVVG---AGYIAVEFAGVLN 187
Query: 940 AIGG------------MGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDN-ITVTIE 986
+G G D ++ + + K+G++ K+ D +T+T+E
Sbjct: 188 GLGSETHLFVRGDAPLRGFDPDIRETLVEEMEKKGIRLHTNAVPKAVEKNADGSLTLTLE 247
Query: 987 NVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAI 1046
+ E L+ D L+ +GR P T LGLE G++ +EKG + V+ T +P I+A+
Sbjct: 248 D------GETLTVDCLIWAIGREPNTDGLGLENAGVKLNEKGYIIVDEYQNTNVPGIYAV 301
Query: 1047 GDCIHGPML 1055
GD L
Sbjct: 302 GDVTGRVEL 310
Score = 42.8 bits (102), Expect = 0.001
Identities = 18/52 (34%), Positives = 29/52 (55%)
Query: 477 FVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAMEYGASCEDVARTCHAHPT 528
+K++ +KV+G+H IG A E+I +A++ GA+ D T HPT
Sbjct: 390 LMKLVVVGKEEKVVGLHGIGFGADEMIQGFAVAIKMGATKADFDNTVAIHPT 441
Score = 41.7 bits (99), Expect = 0.002
Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Query: 537 LGGTCLNVGCIPSKALLNNSHYYHMAHSGDMKARGIEVEGVKLNLETMMGTKSAAVKALT 596
LGGTC+NVGC+P K + + H G +V K + ++ + A + L
Sbjct: 38 LGGTCVNVGCVPKKLMWYGAQIAEAFHD-YAPGYGFDVTENKFDWAKLIANRDAYIDRLH 96
Query: 597 GGIAHLFKSNKA 608
G + ++N
Sbjct: 97 GSYRNGLENNGV 108
>gnl|CDD|233700 TIGR02053, MerA, mercuric reductase. This model represents the
mercuric reductase found in the mer operon for the
detoxification of mercury compounds. MerA is a
FAD-containing flavoprotein which reduces Hg(II) to Hg(0)
utilizing NADPH [Cellular processes, Detoxification].
Length = 463
Score = 116 bits (292), Expect = 3e-27
Identities = 78/277 (28%), Positives = 121/277 (43%), Gaps = 25/277 (9%)
Query: 810 NYHLATKLFTQAGDKGVKLNLETMMGTKSAAVKAL-TGGIAHLFKSNKVTQLNGHGKITG 868
H A K V ++ ++ K V+ L + S V L G +
Sbjct: 55 VAHYARKPPFGGLAATVAVDFGELLEGKREVVEELRHEKYEDVLSSYGVDYLRGRARFKD 114
Query: 869 PNTVTVIKSDGSTEEVKTKNILIATGSE--VTPFPGI-EVD---------EETIVSS--- 913
P TV V D E K LIATG+ + P PG+ E + I S
Sbjct: 115 PKTVKV---DLGREVRGAKRFLIATGARPAIPPIPGLKEAGYLTSEEALALDRIPESLAV 171
Query: 914 --TGALSLKKGSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKV 971
GA+ ++ + RLG+EVT ++ + + + E++ + L ++G++ +V
Sbjct: 172 IGGGAIGVELAQAFARLGSEVTILQRSDRLL-PREEPEISAAVEEALAEEGIEVVTSAQV 230
Query: 972 TGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVP 1031
S G +T+E P + E+ D LLV GRRP T LGLE+ G++ DE+G +
Sbjct: 231 KAVSVRGGGKIITVEK---PGGQGEVEADELLVATGRRPNTDGLGLEKAGVKLDERGGIL 287
Query: 1032 VNSRFQTVIPNIFAIGDCIHGPMLAHKAEDEGIVCVE 1068
V+ +T P I+A GD G L + A EG+V E
Sbjct: 288 VDETLRTSNPGIYAAGDVTGGLQLEYVAAKEGVVAAE 324
Score = 77.1 bits (190), Expect = 2e-14
Identities = 33/78 (42%), Positives = 46/78 (58%)
Query: 452 GIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAME 511
GIE P RA+ N DT GF+K++ + T KVLGV ++ P A E+INEA LA+
Sbjct: 363 GIECDCRTLPLTNVPRARINRDTRGFIKLVAEPGTGKVLGVQVVAPEAAEVINEAALAIR 422
Query: 512 YGASCEDVARTCHAHPTV 529
G + +D+ T H PT+
Sbjct: 423 AGMTVDDLIDTLHPFPTM 440
Score = 49.3 bits (118), Expect = 9e-06
Identities = 28/82 (34%), Positives = 34/82 (41%), Gaps = 14/82 (17%)
Query: 494 IIGPAAGELINEAVLAMEYGASCEDVARTCHAHPTVCVEKNDTLGGTCLNVGCIPSKALL 553
IIG A A+ A E GAS V + + LGGTC+NVGC+PSK LL
Sbjct: 5 IIGSGAAAF-AAAIKAAELGAS-------------VAMVERGPLGGTCVNVGCVPSKMLL 50
Query: 554 NNSHYYHMAHSGDMKARGIEVE 575
+ H A V
Sbjct: 51 RAAEVAHYARKPPFGGLAATVA 72
>gnl|CDD|173442 PTZ00153, PTZ00153, lipoamide dehydrogenase; Provisional.
Length = 659
Score = 115 bits (289), Expect = 3e-26
Identities = 83/287 (28%), Positives = 134/287 (46%), Gaps = 43/287 (14%)
Query: 826 VKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTV----IKSDGST 881
V++++ + + + L GGI + KS K + + H ++ V IKS+ S
Sbjct: 211 VQIDITKLKEYTQSVIDKLRGGIENGLKSKKFCKNSEHVQVIYERGHIVDKNTIKSEKSG 270
Query: 882 EEVKTKNILIATGSEVTPF--PGIEVDEETIVSSTGALSLKK-GSVWGRLGAEVTAIEFM 938
+E K KNI+IATGS TP IEVD++++ +S A+ L+ + G +G + +EFM
Sbjct: 271 KEFKVKNIIIATGS--TPNIPDNIEVDQKSVFTSDTAVKLEGLQNYMGIVGMGIIGLEFM 328
Query: 939 NAIGGMG---------------IDGEVAKQFQRILGK-QGMQFKLGTKVTGASKSGDNIT 982
+ +G +D +VAK F+R+ K + ++ L T + N
Sbjct: 329 DIYTALGSEVVSFEYSPQLLPLLDADVAKYFERVFLKSKPVRVHLNTLIEYVRAGKGNQP 388
Query: 983 VTIE-----------NVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVP 1031
V I K+ +E D+ LV GR+P T+NLGL+++ I+ +G V
Sbjct: 389 VIIGHSERQTGESDGPKKNMNDIKETYVDSCLVATGRKPNTNNLGLDKLKIQMK-RGFVS 447
Query: 1032 VNSRFQT------VIPNIFAIGDCIHGPMLAHKAEDEGIVCVEGIAG 1072
V+ + V NIF IGD MLAH A + + V+ I G
Sbjct: 448 VDEHLRVLREDQEVYDNIFCIGDANGKQMLAHTASHQALKVVDWIEG 494
Score = 59.5 bits (144), Expect = 7e-09
Identities = 25/60 (41%), Positives = 40/60 (66%)
Query: 470 TNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAMEYGASCEDVARTCHAHPTV 529
T ++T+G VK++ K T ++LG+ I+G A LI+E VLA+ S +D+A H+HPT+
Sbjct: 583 TVDNTEGMVKIVYLKDTKEILGMFIVGSYASILIHEGVLAINLKLSVKDLAHMVHSHPTI 642
Score = 46.8 bits (111), Expect = 6e-05
Identities = 29/92 (31%), Positives = 41/92 (44%), Gaps = 19/92 (20%)
Query: 535 DTLGGTCLNVGCIPSKALL----------NNSHYYHMA--------HSGDMKARGIEVEG 576
D++GGTC+NVGCIPSKALL N + Y D R V
Sbjct: 150 DSIGGTCVNVGCIPSKALLYATGKYRELKNLAKLYTYGIYTNAFKNGKNDPVERNQLVAD 209
Query: 577 -VKLNLETMMGTKSAAVKALTGGIAHLFKSNK 607
V++++ + + + L GGI + KS K
Sbjct: 210 TVQIDITKLKEYTQSVIDKLRGGIENGLKSKK 241
>gnl|CDD|180907 PRK07251, PRK07251, pyridine nucleotide-disulfide oxidoreductase;
Provisional.
Length = 438
Score = 112 bits (282), Expect = 4e-26
Identities = 75/279 (26%), Positives = 118/279 (42%), Gaps = 31/279 (11%)
Query: 815 TKLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTV 874
TK A +K L+ E +M TK+ L G + + V + + V
Sbjct: 51 TKTLLVAAEKN--LSFEQVMATKNTVTSRLRGKNYAMLAGSGVDLYDAEAHFVSNKVIEV 108
Query: 875 IKSDGSTEEVKTKNILIATG--SEVTPFPGIEVDEETIVSSTGALSLKK----------- 921
D E+ + I+I TG S V P PG+ D + + STG SL+
Sbjct: 109 QAGDEK-IELTAETIVINTGAVSNVLPIPGLA-DSKHVYDSTGIQSLETLPERLGIIGGG 166
Query: 922 ------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGAS 975
++ +LG++VT ++ + I + VA ++ + + G+ F L T
Sbjct: 167 NIGLEFAGLYNKLGSKVTVLDAASTILPR-EEPSVAALAKQYMEEDGITFLLNAHTTEVK 225
Query: 976 KSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSR 1035
GD + V E+ E DALL GR+P T LGLE IE E+G + V+
Sbjct: 226 NDGDQVLVVTED-------ETYRFDALLYATGRKPNTEPLGLENTDIELTERGAIKVDDY 278
Query: 1036 FQTVIPNIFAIGDCIHGPMLAHKAEDEGIVCVEGIAGDK 1074
QT +P +FA+GD GP + + D+ + + GD
Sbjct: 279 CQTSVPGVFAVGDVNGGPQFTYISLDDFRIVFGYLTGDG 317
Score = 51.3 bits (123), Expect = 2e-06
Identities = 27/84 (32%), Positives = 40/84 (47%)
Query: 452 GIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAME 511
G+ Y V + AA RA NND G KV+ + T ++LG + G + E+IN +AM+
Sbjct: 351 GLPYAVKELLVAAMPRAHVNNDLRGAFKVVVNTETKEILGATLFGEGSQEIINLITMAMD 410
Query: 512 YGASCEDVARTCHAHPTVCVEKND 535
+ HPT+ ND
Sbjct: 411 NKIPYTYFKKQIFTHPTMAENLND 434
Score = 40.1 bits (94), Expect = 0.005
Identities = 14/24 (58%), Positives = 20/24 (83%), Gaps = 1/24 (4%)
Query: 531 VEKNDTL-GGTCLNVGCIPSKALL 553
VE++ + GGTC+N+GCIP+K LL
Sbjct: 32 VEESKAMYGGTCINIGCIPTKTLL 55
Score = 38.2 bits (89), Expect = 0.024
Identities = 18/49 (36%), Positives = 26/49 (53%)
Query: 406 GIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPGIE 454
G+ Y V + AA RA NND G KV+ + T ++LG + G G +
Sbjct: 351 GLPYAVKELLVAAMPRAHVNNDLRGAFKVVVNTETKEILGATLFGEGSQ 399
>gnl|CDD|233412 TIGR01438, TGR, thioredoxin and glutathione reductase selenoprotein.
This homodimeric, FAD-containing member of the pyridine
nucleotide disulfide oxidoreductase family contains a
C-terminal motif Cys-SeCys-Gly, where SeCys is
selenocysteine encoded by TGA (in some sequence reports
interpreted as a stop codon). In some members of this
subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The
reach of the selenium atom at the C-term arm of the
protein is proposed to allow broad substrate specificity.
Length = 484
Score = 96.5 bits (240), Expect = 1e-20
Identities = 57/249 (22%), Positives = 105/249 (42%), Gaps = 24/249 (9%)
Query: 822 GDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGST 881
++ VK + + ++ + +L G + KV N + + + + G
Sbjct: 80 VEETVKHDWKRLVEAVQNHIGSLNWGYRVALREKKVKYENAYAEFVDKHRIKATNKKGKE 139
Query: 882 EEVKTKNILIATGSEVTPFPGIEVDEETIVSSTGALSLKKGSVWGR---LGAEVTAIE-- 936
+ + LIATG E +PGI +E ++S SL G+ +GA A+E
Sbjct: 140 KIYSAERFLIATG-ERPRYPGIPGAKELCITSDDLFSLPY--CPGKTLVVGASYVALECA 196
Query: 937 -FMNAIGG-----------MGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVT 984
F+ IG G D + A + + + G++FK + + V
Sbjct: 197 GFLAGIGLDVTVMVRSILLRGFDQDCANKVGEHMEEHGVKFKRQFVPIKVEQIEAKVLVE 256
Query: 985 IENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEK-GRVPVNSRFQTVIPNI 1043
+ +EE D +L+ +GR T L LE +G++ ++K G++P + QT +P I
Sbjct: 257 FTD-STNGIEEEY--DTVLLAIGRDACTRKLNLENVGVKINKKTGKIPADEEEQTNVPYI 313
Query: 1044 FAIGDCIHG 1052
+A+GD +
Sbjct: 314 YAVGDILED 322
Score = 39.1 bits (91), Expect = 0.013
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
Query: 487 DKVLGVHIIGPAAGELINEAVLAMEYGASCEDVARTCHAHPTVCVEKNDTL------GGT 540
++V+G H++GP AGE+ A+ G + +D+ T HP VC E TL G
Sbjct: 418 ERVVGFHVVGPNAGEVTQGFAAALRCGLTKKDLDNTIGIHP-VCAEVFTTLSVTKRSGQD 476
Query: 541 CLNVGC 546
L GC
Sbjct: 477 ILQQGC 482
Score = 35.2 bits (81), Expect = 0.17
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 11/64 (17%)
Query: 537 LGGTCLNVGCIPSKALLNNSHYYHMAHSG----DMKARGIEV-EGVKLNLETMMGTKSAA 591
+GGTC+NVGCIP K + H A G D + G +V E VK + + ++
Sbjct: 45 IGGTCVNVGCIPKKLM----HQ--AALLGQALKDSRNYGWKVEETVKHDWKRLVEAVQNH 98
Query: 592 VKAL 595
+ +L
Sbjct: 99 IGSL 102
>gnl|CDD|213618 TIGR01424, gluta_reduc_2, glutathione-disulfide reductase, plant.
The tripeptide glutathione is an important reductant,
e.g., for maintaining the cellular thiol/disulfide status
and for protecting against reactive oxygen species such
as hydrogen peroxide. Glutathione-disulfide reductase
regenerates reduced glutathione from oxidized glutathione
(glutathione disulfide) + NADPH. This model represents
one of two closely related subfamilies of
glutathione-disulfide reductase. Both are closely related
to trypanothione reductase, and separate models are built
so each of the three can describe proteins with conserved
function. This model describes glutathione-disulfide
reductases of plants and some bacteria, including
cyanobacteria [Energy metabolism, Electron transport].
Length = 446
Score = 95.6 bits (238), Expect = 1e-20
Identities = 56/238 (23%), Positives = 104/238 (43%), Gaps = 24/238 (10%)
Query: 826 VKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEVK 885
+ + + ++ K + L+G + L+G ++ GPNTV V+ S +
Sbjct: 74 ARFDWKKLLAAKDQEIARLSGLYRKGLANAGAELLDGRAELVGPNTVEVLASGKT---YT 130
Query: 886 TKNILIATGSE-VTP-FPGIEV-------------DEETIVSSTGALSLKKGSVWGRLGA 930
+ ILIA G P PG E+ + +++ G ++++ ++ LG
Sbjct: 131 AEKILIAVGGRPPKPALPGHELGITSNEAFHLPTLPKSILIAGGGYIAVEFAGIFRGLGV 190
Query: 931 EVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKD 990
+ T I + G D ++ + L ++G++ +T SK D
Sbjct: 191 QTTLI-YRGKEILRGFDDDMRRGLAAALEERGIRILPEDSITSISKDDDGRLKATL---- 245
Query: 991 PTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGD 1048
+K EE+ D +L GR P T+ LGLE G+ ++ G + V+ +T P+I+A+GD
Sbjct: 246 -SKHEEIVADVVLFATGRSPNTNGLGLEAAGVRLNDLGAIAVDEYSRTSTPSIYAVGD 302
Score = 49.4 bits (118), Expect = 7e-06
Identities = 22/55 (40%), Positives = 33/55 (60%)
Query: 478 VKVLGDKLTDKVLGVHIIGPAAGELINEAVLAMEYGASCEDVARTCHAHPTVCVE 532
+K++ D DKVLG H++GP A E+I +A++ GA+ +D T HPT E
Sbjct: 387 MKLVVDAKDDKVLGAHMVGPDAAEIIQGLAIALKMGATKDDFDSTVAVHPTSAEE 441
Score = 42.5 bits (100), Expect = 0.001
Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Query: 529 VCVEKNDTLGGTCLNVGCIPSKALLNNSHYYHMAHSGDMKARGIEVEGVKLNLETMMGTK 588
V + + +GGTC+ GC+P K ++ S + H D G V + + + ++ K
Sbjct: 28 VAIAEEFRVGGTCVIRGCVPKKLMVYASQF--AEHFEDAAGYGWTVGKARFDWKKLLAAK 85
Query: 589 SAAVKALTG 597
+ L+G
Sbjct: 86 DQEIARLSG 94
>gnl|CDD|237806 PRK14727, PRK14727, putative mercuric reductase; Provisional.
Length = 479
Score = 86.5 bits (214), Expect = 2e-17
Identities = 67/276 (24%), Positives = 107/276 (38%), Gaps = 26/276 (9%)
Query: 806 AVQANYHLATKLFTQAGDKGVKLNLETMMGTKSAAVKAL-TGGIAHLFKSN-KVTQLNGH 863
A Q + + F ++ ++ + A V+ L + N +T L G+
Sbjct: 69 AAQLAHQQRSNPFDGVEAVAPSIDRGLLLHQQQARVEELRHAKYQSILDGNPALTLLKGY 128
Query: 864 GKITGPNTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGIEVDEETIV-SSTGALSLKK- 921
+ NT+ V DG + LIATGS T P I +T +ST AL +
Sbjct: 129 ARFKDGNTLVVRLHDGGERVLAADRCLIATGSTPT-IPPIPGLMDTPYWTSTEALFSDEL 187
Query: 922 GSVWGRLGAEVTAIEFMNAIGGMGI--------------DGEVAKQFQRILGKQGMQFKL 967
+ +G+ V A E A +G D + + K+G++
Sbjct: 188 PASLTVIGSSVVAAEIAQAYARLGSRVTILARSTLLFREDPLLGETLTACFEKEGIEVLN 247
Query: 968 GTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEK 1027
T+ + + +T T EL + LL+ GR TH+L LE +G+ D
Sbjct: 248 NTQASLVEHDDNGFVLT-------TGHGELRAEKLLISTGRHANTHDLNLEAVGVTTDTS 300
Query: 1028 GRVPVNSRFQTVIPNIFAIGDCIHGPMLAHKAEDEG 1063
G + VN +T P+I+A GDC P + A G
Sbjct: 301 GAIVVNPAMETSAPDIYAAGDCSDLPQFVYVAAAAG 336
Score = 53.4 bits (128), Expect = 5e-07
Identities = 21/54 (38%), Positives = 34/54 (62%)
Query: 467 RAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAMEYGASCEDVA 520
RA N +TDGF+K++ ++ T K++G I+ GELI A LA+ + E++A
Sbjct: 394 RALANFETDGFIKLVAEEGTRKLIGAQILAHEGGELIQSAALAIHNRMTVEELA 447
Score = 46.9 bits (111), Expect = 5e-05
Identities = 33/126 (26%), Positives = 52/126 (41%), Gaps = 16/126 (12%)
Query: 488 KVLGVHIIGPAAGELINEAVLAMEYGASCEDVARTCHAHPTVCVEKNDTLGGTCLNVGCI 547
L V IIG + A+ A E+GA +E D +GG C+NVGC+
Sbjct: 15 LQLHVAIIGSGSAAF-AAAIKAAEHGAR------------VTIIEGADVIGGCCVNVGCV 61
Query: 548 PSKALLNNSHYYHMAHSGDMKARGIEVEGVKLNLETMMGTKSAAVKAL-TGGIAHLFKSN 606
PSK L+ + H S G+E ++ ++ + A V+ L + N
Sbjct: 62 PSKILIRAAQLAHQQRSNPFD--GVEAVAPSIDRGLLLHQQQARVEELRHAKYQSILDGN 119
Query: 607 KALKII 612
AL ++
Sbjct: 120 PALTLL 125
Score = 35.7 bits (82), Expect = 0.14
Identities = 12/31 (38%), Positives = 21/31 (67%)
Query: 421 RAKTNNDTDGFVKVLGDKLTDKVLGVHIIGP 451
RA N +TDGF+K++ ++ T K++G I+
Sbjct: 394 RALANFETDGFIKLVAEEGTRKLIGAQILAH 424
>gnl|CDD|215301 PLN02546, PLN02546, glutathione reductase.
Length = 558
Score = 86.5 bits (214), Expect = 2e-17
Identities = 73/238 (30%), Positives = 109/238 (45%), Gaps = 38/238 (15%)
Query: 832 TMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEVKTKNILI 891
T++ K+A ++ LTG ++ K+ VT + G GKI P+TV V DG +NILI
Sbjct: 168 TLIANKNAELQRLTGIYKNILKNAGVTLIEGRGKIVDPHTVDV---DGKL--YTARNILI 222
Query: 892 ATGSEVTPF----PGIEVDEETIVSSTGALSL-KKGSVWGRLGAEVTAIEFMNAIGGM-- 944
A G PF PGIE + S AL L K +G A+EF G+
Sbjct: 223 AVGGR--PFIPDIPGIE----HAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFNGLKS 276
Query: 945 -------------GIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDP 991
G D EV + +G++F KS D ++K
Sbjct: 277 DVHVFIRQKKVLRGFDEEVRDFVAEQMSLRGIEFHTEESPQAIIKSADGSL----SLK-- 330
Query: 992 TKKEELS-CDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGD 1048
T K + ++ GR+P T NLGLEE+G++ D+ G + V+ +T +P+I+A+GD
Sbjct: 331 TNKGTVEGFSHVMFATGRKPNTKNLGLEEVGVKMDKNGAIEVDEYSRTSVPSIWAVGD 388
Score = 36.4 bits (84), Expect = 0.092
Identities = 21/56 (37%), Positives = 31/56 (55%)
Query: 477 FVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAMEYGASCEDVARTCHAHPTVCVE 532
F+K++ T+KVLGVH+ G A E+I +A++ G + D T HPT E
Sbjct: 472 FMKLIVCAKTNKVLGVHMCGEDAPEIIQGFAVAVKAGLTKADFDATVGIHPTAAEE 527
Score = 34.9 bits (80), Expect = 0.28
Identities = 31/105 (29%), Positives = 48/105 (45%), Gaps = 7/105 (6%)
Query: 509 AMEYGASCEDVARTCH-AHPTVCVEKNDTLGGTCLNVGCIPSKALLNNSHYYHMAHSGDM 567
A +GAS A C T+ + +GGTC+ GC+P K L+ S Y H
Sbjct: 98 ASNFGAS----AAVCELPFATISSDTLGGVGGTCVLRGCVPKKLLVYASKYSHEFEESRG 153
Query: 568 KARGIEVEGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKALKII 612
E E K + T++ K+A ++ LTG ++ K N + +I
Sbjct: 154 FGWKYETEP-KHDWNTLIANKNAELQRLTGIYKNILK-NAGVTLI 196
>gnl|CDD|181142 PRK07846, PRK07846, mycothione reductase; Reviewed.
Length = 451
Score = 83.8 bits (208), Expect = 9e-17
Identities = 58/225 (25%), Positives = 95/225 (42%), Gaps = 33/225 (14%)
Query: 857 VTQLNGHGKITGPNTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGI------------- 903
+ GH + GP T+ G EE+ ++IA GS P I
Sbjct: 104 IDVYRGHARFIGPKTLRT----GDGEEITADQVVIAAGSRPVIPPVIADSGVRYHTSDTI 159
Query: 904 ----EVDEETIVSSTGALSLKKGSVWGRLGAEVTAIEFMNAIGGM--GIDGEVAKQFQRI 957
E+ E ++ G ++ + V+ LG VT + N G + +D +++++F +
Sbjct: 160 MRLPELPESLVIVGGGFIAAEFAHVFSALGVRVTVV---NRSGRLLRHLDDDISERFTEL 216
Query: 958 LGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGL 1017
K+ +LG V G S+ G +T+ +++ + D LLV GR P L
Sbjct: 217 ASKR-WDVRLGRNVVGVSQDGSGVTLRLDD------GSTVEADVLLVATGRVPNGDLLDA 269
Query: 1018 EEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGPMLAHKAEDE 1062
G++ DE GRV V+ +T +FA+GD L H A E
Sbjct: 270 AAAGVDVDEDGRVVVDEYQRTSAEGVFALGDVSSPYQLKHVANHE 314
Score = 58.8 bits (143), Expect = 9e-09
Identities = 23/49 (46%), Positives = 32/49 (65%)
Query: 473 DTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAMEYGASCEDVAR 521
DT GFVK++ D+ T ++LG HIIGP A LI + AM +G ++AR
Sbjct: 381 DTTGFVKLIADRDTGRLLGAHIIGPQASTLIQPLIQAMSFGLDAREMAR 429
Score = 44.2 bits (105), Expect = 4e-04
Identities = 15/25 (60%), Positives = 20/25 (80%)
Query: 427 DTDGFVKVLGDKLTDKVLGVHIIGP 451
DT GFVK++ D+ T ++LG HIIGP
Sbjct: 381 DTTGFVKLIADRDTGRLLGAHIIGP 405
Score = 41.9 bits (99), Expect = 0.001
Identities = 16/20 (80%), Positives = 17/20 (85%), Gaps = 1/20 (5%)
Query: 531 VEKNDTLGGTCLNVGCIPSK 550
VEK T GGTCLNVGCIP+K
Sbjct: 28 VEKG-TFGGTCLNVGCIPTK 46
>gnl|CDD|184298 PRK13748, PRK13748, putative mercuric reductase; Provisional.
Length = 561
Score = 84.4 bits (209), Expect = 9e-17
Identities = 62/229 (27%), Positives = 96/229 (41%), Gaps = 44/229 (19%)
Query: 857 VTQLNGHGKITGPNTVTVIKSDGSTEEVKTKNILIATGSE--VTPFPGI----------- 903
+T L+G + T+ V +DG V LIATG+ V P PG+
Sbjct: 204 ITVLHGEARFKDDQTLIVRLNDGGERVVAFDRCLIATGASPAVPPIPGLKETPYWTSTEA 263
Query: 904 ----EVDEETIV--SSTGALSLKKGSVWGRLGAEVTAIE----FMN---AIGGMGIDGEV 950
+ E V SS AL L + + RLG++VT + F AIG V
Sbjct: 264 LVSDTIPERLAVIGSSVVALELAQA--FARLGSKVTILARSTLFFREDPAIGE-----AV 316
Query: 951 AKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRP 1010
F+ +G++ T+ + + +T T EL D LLV GR P
Sbjct: 317 TAAFR----AEGIEVLEHTQASQVAHVDGEFVLT-------TGHGELRADKLLVATGRAP 365
Query: 1011 YTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGPMLAHKA 1059
T +L L+ G+ + +G + ++ +T +P+I+A GDC P + A
Sbjct: 366 NTRSLALDAAGVTVNAQGAIVIDQGMRTSVPHIYAAGDCTDQPQFVYVA 414
Score = 49.0 bits (117), Expect = 1e-05
Identities = 19/44 (43%), Positives = 30/44 (68%)
Query: 467 RAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAM 510
RA N DT GF+K++ ++ + +++GV + P AGELI A LA+
Sbjct: 476 RALANFDTRGFIKLVIEEGSGRLIGVQAVAPEAGELIQTAALAI 519
Score = 42.4 bits (100), Expect = 0.001
Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 14/72 (19%)
Query: 490 LGVHIIGPAAGELINEAVLAMEYGASCEDVARTCHAHPTVCVEKNDTLGGTCLNVGCIPS 549
L V +IG + G + A+ A+E GA V + + T+GGTC+NVGC+PS
Sbjct: 99 LHVAVIG-SGGAAMAAALKAVEQGA-------------RVTLIERGTIGGTCVNVGCVPS 144
Query: 550 KALLNNSHYYHM 561
K ++ +H H+
Sbjct: 145 KIMIRAAHIAHL 156
Score = 32.0 bits (73), Expect = 1.9
Identities = 11/31 (35%), Positives = 21/31 (67%)
Query: 421 RAKTNNDTDGFVKVLGDKLTDKVLGVHIIGP 451
RA N DT GF+K++ ++ + +++GV + P
Sbjct: 476 RALANFDTRGFIKLVIEEGSGRLIGVQAVAP 506
>gnl|CDD|236112 PRK07845, PRK07845, flavoprotein disulfide reductase; Reviewed.
Length = 466
Score = 78.7 bits (195), Expect = 4e-15
Identities = 63/219 (28%), Positives = 98/219 (44%), Gaps = 38/219 (17%)
Query: 857 VTQLNGHGKIT----GPNTVTVIKSDGSTEEVKTKNILIATGSEVTP--FPGIEVDEETI 910
V + G G++ GP+ V V +DG E + +LIATG+ +P P E D E I
Sbjct: 107 VRVIAGRGRLIDPGLGPHRVKVTTADGGEETLDADVVLIATGA--SPRILPTAEPDGERI 164
Query: 911 VSSTGALSLKKGSVWGRL---GAEVTAIEFMNAIGGMGI---------------DGEVAK 952
++ L + + L G+ VT EF +A +G+ D + A+
Sbjct: 165 LTWRQLYDLDE--LPEHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLPGEDADAAE 222
Query: 953 QFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYT 1012
+ + ++GM ++ ++GD + VT+ D E L+ VG P T
Sbjct: 223 VLEEVFARRGMTVLKRSRAESVERTGDGVVVTLT---DGRTVEGSHA---LMAVGSVPNT 276
Query: 1013 HNLGLEEIGIEKDEKGRVPVN--SRFQTVIPNIFAIGDC 1049
LGLEE G+E G + V+ SR T +P I+A GDC
Sbjct: 277 AGLGLEEAGVELTPSGHITVDRVSR--TSVPGIYAAGDC 313
Score = 51.0 bits (123), Expect = 2e-06
Identities = 24/71 (33%), Positives = 37/71 (52%)
Query: 452 GIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAME 511
+ + P A N RAK + DGFVK+ T V+G ++ P A ELI LA++
Sbjct: 371 EVPARTVMLPLATNPRAKMSGLRDGFVKLFCRPGTGVVIGGVVVAPRASELILPIALAVQ 430
Query: 512 YGASCEDVART 522
+ +D+A+T
Sbjct: 431 NRLTVDDLAQT 441
Score = 36.4 bits (85), Expect = 0.077
Identities = 15/46 (32%), Positives = 22/46 (47%)
Query: 406 GIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGP 451
+ + P A N RAK + DGFVK+ T V+G ++ P
Sbjct: 371 EVPARTVMLPLATNPRAKMSGLRDGFVKLFCRPGTGVVIGGVVVAP 416
>gnl|CDD|237790 PRK14694, PRK14694, putative mercuric reductase; Provisional.
Length = 468
Score = 77.7 bits (191), Expect = 1e-14
Identities = 64/226 (28%), Positives = 95/226 (42%), Gaps = 31/226 (13%)
Query: 857 VTQLNGHGKITGPNTVTVIKSDGSTEEVKTKNILIATGSEVT--PFPGIEVDEETIVSST 914
+T LNG + T+TV +DG + V I TG+ P PG+ E ++ST
Sbjct: 112 ITVLNGEARFVDERTLTVTLNDGGEQTVHFDRAFIGTGARPAEPPVPGLA--ETPYLTST 169
Query: 915 GALSLKKGSVWGRL---GAEVTAIEFMNAIGGMGI--------------DGEVAKQFQRI 957
AL L + RL GA V A+E A +G D V + +
Sbjct: 170 SALELD--HIPERLLVIGASVVALELAQAFARLGSRVTVLARSRVLSQEDPAVGEAIEAA 227
Query: 958 LGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGL 1017
++G++ T+ + +G + T L + LLV GR P T NL L
Sbjct: 228 FRREGIEVLKQTQASEVDYNGREFILE-------TNAGTLRAEQLLVATGRTPNTENLNL 280
Query: 1018 EEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGPMLAHKAEDEG 1063
E IG+E E+G + ++ QT + I+A GDC P + A G
Sbjct: 281 ESIGVET-ERGAIRIDEHLQTTVSGIYAAGDCTDQPQFVYVAAAGG 325
Score = 48.8 bits (116), Expect = 1e-05
Identities = 20/54 (37%), Positives = 35/54 (64%)
Query: 467 RAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAMEYGASCEDVA 520
RA N DT GF+K++ ++ + ++LGV ++ AGELI AV+A+ + ++A
Sbjct: 383 RALVNFDTGGFIKMVAERGSGRLLGVQVVAGEAGELIQTAVMALRARMTVNEIA 436
Score = 47.6 bits (113), Expect = 3e-05
Identities = 28/111 (25%), Positives = 52/111 (46%), Gaps = 15/111 (13%)
Query: 485 LTDKVLGVHIIGPAAGELINEAVLAMEYGASCEDVARTCHAHPTVCVEKNDTLGGTCLNV 544
++D L + +IG + G + A+ A E GA + R T+GGTC+N+
Sbjct: 2 MSDNNLHIAVIG-SGGSAMAAALKATERGARVTLIER-------------GTIGGTCVNI 47
Query: 545 GCIPSKALLNNSHYYHMAHSGDMKARGIEVEGVKLNLETMMGTKSAAVKAL 595
GC+PSK ++ +H H+ G+ + ++ ++ + A V+ L
Sbjct: 48 GCVPSKIMIRAAHIAHLRRESPFDD-GLSAQAPVVDRSALLAQQQARVEEL 97
Score = 30.3 bits (68), Expect = 6.6
Identities = 11/29 (37%), Positives = 21/29 (72%)
Query: 421 RAKTNNDTDGFVKVLGDKLTDKVLGVHII 449
RA N DT GF+K++ ++ + ++LGV ++
Sbjct: 383 RALVNFDTGGFIKMVAERGSGRLLGVQVV 411
>gnl|CDD|181196 PRK08010, PRK08010, pyridine nucleotide-disulfide oxidoreductase;
Provisional.
Length = 441
Score = 77.4 bits (190), Expect = 1e-14
Identities = 65/259 (25%), Positives = 111/259 (42%), Gaps = 28/259 (10%)
Query: 834 MGTKSAAVKALTGGIAH-LFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEVKTKNILIA 892
+ K+ V L H L + ++G + +++ V + +G+ E + + I I
Sbjct: 68 IQRKNEVVNFLRNKNFHNLADMPNIDVIDGQAEFINNHSLRVHRPEGNLE-IHGEKIFIN 126
Query: 893 TGSE--VTPFPGIEVDEETIVSSTGALSLKK-GSVWGRLGAEVTAIEFMNAIGGMGI--- 946
TG++ V P PGI + STG L+LK+ G LG +EF + G
Sbjct: 127 TGAQTVVPPIPGITT-TPGVYDSTGLLNLKELPGHLGILGGGYIGVEFASMFANFGSKVT 185
Query: 947 ------------DGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKK 994
D ++A IL QG+ L V S + + V ++
Sbjct: 186 ILEAASLFLPREDRDIADNIATILRDQGVDIILNAHVERISHHENQVQVH-------SEH 238
Query: 995 EELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGPM 1054
+L+ DALL+ GR+P T +L E GI +E+G + V+ T NI+A+GD G
Sbjct: 239 AQLAVDALLIASGRQPATASLHPENAGIAVNERGAIVVDKYLHTTADNIWAMGDVTGGLQ 298
Query: 1055 LAHKAEDEGIVCVEGIAGD 1073
+ + D+ + + + G+
Sbjct: 299 FTYISLDDYRIVRDELLGE 317
Score = 43.1 bits (101), Expect = 7e-04
Identities = 25/84 (29%), Positives = 41/84 (48%)
Query: 452 GIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAME 511
G + +V P AA RA+ NDT G +K + D T ++LG ++ + E+IN + M+
Sbjct: 352 GADIQVVTLPVAAIPRARVMNDTRGVLKAIVDNKTQRILGASLLCVDSHEMINIVKMVMD 411
Query: 512 YGASCEDVARTCHAHPTVCVEKND 535
G + HP++ ND
Sbjct: 412 AGLPYSILRDQIFTHPSMSESLND 435
Score = 36.5 bits (84), Expect = 0.073
Identities = 12/26 (46%), Positives = 20/26 (76%)
Query: 532 EKNDTLGGTCLNVGCIPSKALLNNSH 557
+ N GGTC+N+GCIP+K L++++
Sbjct: 34 QSNAMYGGTCINIGCIPTKTLVHDAQ 59
Score = 33.8 bits (77), Expect = 0.53
Identities = 16/44 (36%), Positives = 25/44 (56%)
Query: 406 GIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHII 449
G + +V P AA RA+ NDT G +K + D T ++LG ++
Sbjct: 352 GADIQVVTLPVAAIPRARVMNDTRGVLKAIVDNKTQRILGASLL 395
>gnl|CDD|200098 TIGR01423, trypano_reduc, trypanothione-disulfide reductase.
Trypanothione, a glutathione-modified derivative of
spermidine, is (in its reduced form) an important
antioxidant found in trypanosomatids (Crithidia,
Leishmania, Trypanosoma). This model describes
trypanothione reductase, a possible antitrypanosomal drug
target closely related to some forms of glutathione
reductase.
Length = 486
Score = 76.2 bits (187), Expect = 3e-14
Identities = 74/274 (27%), Positives = 116/274 (42%), Gaps = 33/274 (12%)
Query: 826 VKLNLETMMGTKSAAVKALTGGIAHLFKSNK-VTQLNGHGKITGPNTVTVIKSDGSTEEV 884
VK N + ++ K+ AV + +F + +T G G + N V V +S V
Sbjct: 87 VKANWKALIAAKNKAVLDINKSYEGMFADTEGLTFFLGWGALEDKNVVLVRESADPKSAV 146
Query: 885 K----TKNILIATGSEVTPFPGIEVDEETIVSSTGALSLKKGSVWG-RLGAEVTAIEFM- 938
K ++IL+ATGS GI E I SS A L + +G ++EF
Sbjct: 147 KERLQAEHILLATGSW-PQMLGIPGIEHCI-SSNEAFYLDEPPRRVLTVGGGFISVEFAG 204
Query: 939 -----NAIGGM------------GIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNI 981
GG G D + K+ + L G+ + + D
Sbjct: 205 IFNAYKPRGGKVTLCYRNNMILRGFDSTLRKELTKQLRANGINIMTNENPAKVTLNADGS 264
Query: 982 T-VTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVI 1040
VT E+ K L D +++ +GR P T L L+++G+E +KG + V+ +T +
Sbjct: 265 KHVTFESGK------TLDVDVVMMAIGRVPRTQTLQLDKVGVELTKKGAIQVDEFSRTNV 318
Query: 1041 PNIFAIGDCIHGPMLAHKAEDEGIVCVEGIAGDK 1074
PNI+AIGD ML A +EG V+ + G+K
Sbjct: 319 PNIYAIGDVTDRVMLTPVAINEGAAFVDTVFGNK 352
Score = 46.9 bits (111), Expect = 4e-05
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 4/75 (5%)
Query: 537 LGGTCLNVGCIPSKALLNNSHYYHMAHSGDMKARGIEVEG--VKLNLETMMGTKSAAVKA 594
LGGTC+NVGC+P K ++ + Y M + G E + VK N + ++ K+ AV
Sbjct: 47 LGGTCVNVGCVPKKLMVTGAQY--MDTLRESAGFGWEFDRSSVKANWKALIAAKNKAVLD 104
Query: 595 LTGGIAHLFKSNKAL 609
+ +F + L
Sbjct: 105 INKSYEGMFADTEGL 119
Score = 36.9 bits (85), Expect = 0.057
Identities = 16/55 (29%), Positives = 27/55 (49%)
Query: 478 VKVLGDKLTDKVLGVHIIGPAAGELINEAVLAMEYGASCEDVARTCHAHPTVCVE 532
K++ + VLGVH++G ++ E+I + ++ A D T HPT E
Sbjct: 412 AKIVTNHADGTVLGVHLLGDSSPEIIQAVGICLKLNAKISDFYNTIGVHPTSAEE 466
>gnl|CDD|130488 TIGR01421, gluta_reduc_1, glutathione-disulfide reductase,
animal/bacterial. The tripeptide glutathione is an
important reductant, e.g., for maintaining the cellular
thiol/disulfide status and for protecting against
reactive oxygen species such as hydrogen peroxide.
Glutathione-disulfide reductase regenerates reduced
glutathione from oxidized glutathione (glutathione
disulfide) + NADPH. This model represents one of two
closely related subfamilies of glutathione-disulfide
reductase. Both are closely related to trypanothione
reductase, and separate models are built so each of the
three can describe proteins with conserved function. This
model describes glutathione-disulfide reductases of
animals, yeast, and a number of animal-resident bacteria
[Energy metabolism, Electron transport].
Length = 450
Score = 76.0 bits (187), Expect = 3e-14
Identities = 63/243 (25%), Positives = 105/243 (43%), Gaps = 32/243 (13%)
Query: 827 KLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEVKT 886
N + + A V L G + NKV + GH + T TV V + +
Sbjct: 76 TFNWPELKEKRDAYVDRLNGIYQKNLEKNKVDVIFGHARFTKDGTVEV-----NGRDYTA 130
Query: 887 KNILIATGSEVTPFPGIEVDEETIVSSTGALSLK---KGSVWGRLGAEVTAIEFMNAIGG 943
+ILIATG + + I E S G +L+ K V +GA A+E + G
Sbjct: 131 PHILIATGGKPSFPENIP-GAELGTDSDGFFALEELPKRVVI--VGAGYIAVELAGVLHG 187
Query: 944 MGIDGEVAKQFQRIL---------------GKQGMQFKLGTKVTGASKSGDN-ITVTIEN 987
+G + + + +R+L K+G+ +K K+ + + + E+
Sbjct: 188 LGSETHLVIRHERVLRSFDSMISETITEEYEKEGINVHKLSKPVKVEKTVEGKLVIHFED 247
Query: 988 VKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIG 1047
K D L+ +GR+P T LGLE +GI+ +EKG++ V+ T +P I+A+G
Sbjct: 248 GK-----SIDDVDELIWAIGRKPNTKGLGLENVGIKLNEKGQIIVDEYQNTNVPGIYALG 302
Query: 1048 DCI 1050
D +
Sbjct: 303 DVV 305
Score = 39.8 bits (93), Expect = 0.006
Identities = 24/84 (28%), Positives = 32/84 (38%), Gaps = 2/84 (2%)
Query: 524 HAHPTVCVEKNDTLGGTCLNVGCIPSKALLNNSHYYHMAHSGDMKARGIEVEGVKLNLET 583
H + VE LGGTC+NVGC+P K + S H +E N
Sbjct: 24 HGAKALLVEAKK-LGGTCVNVGCVPKKVMWYASDLAERMHDAADYGFYQNLEN-TFNWPE 81
Query: 584 MMGTKSAAVKALTGGIAHLFKSNK 607
+ + A V L G + NK
Sbjct: 82 LKEKRDAYVDRLNGIYQKNLEKNK 105
Score = 35.2 bits (81), Expect = 0.17
Identities = 21/73 (28%), Positives = 34/73 (46%)
Query: 456 KVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAMEYGAS 515
KV F A T+ +K++ +KV+G+H IG E++ +A++ GA+
Sbjct: 369 KVYNSSFTPMYYAMTSEKQKCRMKLVCAGKEEKVVGLHGIGDGVDEMLQGFAVAIKMGAT 428
Query: 516 CEDVARTCHAHPT 528
D T HPT
Sbjct: 429 KADFDNTVAIHPT 441
>gnl|CDD|132493 TIGR03452, mycothione_red, mycothione reductase. Mycothiol, a
glutathione analog in Mycobacterium tuberculosis and
related species, can form a disulfide-linked dimer called
mycothione. This enzyme can reduce mycothione to
regenerate two mycothiol molecules. The enzyme shows some
sequence similarity to glutathione-disulfide reductase,
trypanothione-disulfide reductase, and dihydrolipoamide
dehydrogenase. The characterized protein from M.
tuberculosis, a homodimer, has FAD as a cofactor, one per
monomer, and uses NADPH as a substrate.
Length = 452
Score = 74.4 bits (183), Expect = 1e-13
Identities = 59/227 (25%), Positives = 95/227 (41%), Gaps = 37/227 (16%)
Query: 857 VTQLNGHGKITGPNTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGI------------- 903
+ +GH + GP T+ G EE+ I+IA GS P I
Sbjct: 107 IDVYDGHARFVGPRTLRT----GDGEEITGDQIVIAAGSRPYIPPAIADSGVRYHTNEDI 162
Query: 904 ----EVDEETIVSSTGALSLKKGSVWGRLGAEVTAIEFMNAIGGMGI----DGEVAKQFQ 955
E+ E ++ G ++ + V+ LG VT + + D +++ +F
Sbjct: 163 MRLPELPESLVIVGGGYIAAEFAHVFSALGTRVTIV-----NRSTKLLRHLDEDISDRFT 217
Query: 956 RILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNL 1015
I K+ +LG VT + GD +T+T+++ ++ D LLV GR P L
Sbjct: 218 EIAKKK-WDIRLGRNVTAVEQDGDGVTLTLDDGST------VTADVLLVATGRVPNGDLL 270
Query: 1016 GLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGPMLAHKAEDE 1062
E G+E DE GR+ V+ +T ++A+GD L H A E
Sbjct: 271 DAEAAGVEVDEDGRIKVDEYGRTSARGVWALGDVSSPYQLKHVANAE 317
Score = 56.7 bits (137), Expect = 4e-08
Identities = 23/49 (46%), Positives = 31/49 (63%)
Query: 473 DTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAMEYGASCEDVAR 521
DT GF K++ D+ T K+LG HIIGP A LI + AM +G ++AR
Sbjct: 384 DTTGFCKLIADRDTGKLLGAHIIGPQASSLIQPLITAMAFGLDAREMAR 432
Score = 40.9 bits (96), Expect = 0.004
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 525 AHPTVCVEKNDTLGGTCLNVGCIPSK 550
A + + + T GGTCLNVGCIP+K
Sbjct: 22 ADKRIAIVEKGTFGGTCLNVGCIPTK 47
Score = 40.5 bits (95), Expect = 0.004
Identities = 15/25 (60%), Positives = 19/25 (76%)
Query: 427 DTDGFVKVLGDKLTDKVLGVHIIGP 451
DT GF K++ D+ T K+LG HIIGP
Sbjct: 384 DTTGFCKLIADRDTGKLLGAHIIGP 408
>gnl|CDD|185420 PTZ00058, PTZ00058, glutathione reductase; Provisional.
Length = 561
Score = 73.9 bits (181), Expect = 2e-13
Identities = 60/214 (28%), Positives = 107/214 (50%), Gaps = 26/214 (12%)
Query: 856 KVTQLNGHGKITGPNTVTVIKSDGSTEE----VKTKNILIATGSEVTPFPGIEVDEETIV 911
KV+Q++G + + VT++ + S + ++ KNILIA G++ FP ++ E TI
Sbjct: 169 KVSQVDGEADESDDDEVTIVSAGVSQLDDGQVIEGKNILIAVGNK-PIFPDVKGKEFTI- 226
Query: 912 SSTGALSLKKGSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGK--QGMQFKLGT 969
SS +K+ G G+ A+E +N + +G + + + R+L K + + +L
Sbjct: 227 SSDDFFKIKEAKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLLRKFDETIINELEN 286
Query: 970 KVTGASKSGDNITVTIENVKDPTKKEE-------------LSCDALLVCVGRRPYTHNLG 1016
+ K+ NI +T NV++ K +E D ++ CVGR P T +L
Sbjct: 287 DM---KKNNINI-ITHANVEEIEKVKEKNLTIYLSDGRKYEHFDYVIYCVGRSPNTEDLN 342
Query: 1017 LEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCI 1050
L+ + I K KG + V+ +T + +I+A+GDC
Sbjct: 343 LKALNI-KTPKGYIKVDDNQRTSVKHIYAVGDCC 375
Score = 41.1 bits (96), Expect = 0.003
Identities = 15/56 (26%), Positives = 29/56 (51%)
Query: 477 FVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAMEYGASCEDVARTCHAHPTVCVE 532
++K++ + + G+HI+G A E++ +A++ A+ D T HPT E
Sbjct: 497 YLKLVCVGKEELIKGLHIVGLNADEILQGFAVALKMNATKADFDETIPIHPTAAEE 552
Score = 36.1 bits (83), Expect = 0.12
Identities = 16/24 (66%), Positives = 19/24 (79%), Gaps = 1/24 (4%)
Query: 531 VEKNDTLGGTCLNVGCIPSKALLN 554
VEK D LGGTC+NVGC+P K + N
Sbjct: 77 VEK-DYLGGTCVNVGCVPKKIMFN 99
>gnl|CDD|223523 COG0446, HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases
[General function prediction only].
Length = 415
Score = 71.9 bits (176), Expect = 5e-13
Identities = 42/149 (28%), Positives = 68/149 (45%), Gaps = 7/149 (4%)
Query: 924 VWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITV 983
+ G +VT IE + +GG +D EVA++ +L K G++ LGTKV G G+ + V
Sbjct: 154 AAAKRGKKVTLIEAADRLGGQLLDPEVAEELAELLEKYGVELLLGTKVVGVEGKGNTLVV 213
Query: 984 TIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQT-VIPN 1042
EE+ D +++ G RP L + + G V V+ R T P+
Sbjct: 214 ERVVG---IDGEEIKADLVIIGPGERPNVV-LANDALPGLALAGGAVLVDERGGTSKDPD 269
Query: 1043 IFAIGDCIHGPMLAHKAEDEGIVCVEGIA 1071
++A GD + A + G + + IA
Sbjct: 270 VYAAGDV--AEIPAAETGKGGRIALWAIA 296
>gnl|CDD|185416 PTZ00052, PTZ00052, thioredoxin reductase; Provisional.
Length = 499
Score = 71.4 bits (175), Expect = 1e-12
Identities = 64/231 (27%), Positives = 100/231 (43%), Gaps = 28/231 (12%)
Query: 853 KSNKVTQLNGHGKITGPNTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGIEVDEETIVS 912
+S+KV +NG K+ +TV+ + E + K ILIATG + + +E ++
Sbjct: 113 RSSKVEYINGLAKLKDEHTVS-YGDNSQEETITAKYILIATGGRPSIPEDVPGAKEYSIT 171
Query: 913 STGALSLKKGSVWGR---LGAEVTAIE---FMNAIGG-----------MGIDGEVAKQFQ 955
S SL K G+ +GA +E F+N +G G D + +++
Sbjct: 172 SDDIFSLSKDP--GKTLIVGASYIGLETAGFLNELGFDVTVAVRSIPLRGFDRQCSEKVV 229
Query: 956 RILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNL 1015
+ +QG F G K D I V + EL D +L GR+P L
Sbjct: 230 EYMKEQGTLFLEGVVPINIEKMDDKIKVLFSD-----GTTELF-DTVLYATGRKPDIKGL 283
Query: 1016 GLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHG-PMLAHKAEDEGIV 1065
L IG+ ++ ++ + T IPNIFA+GD + G P L A GI+
Sbjct: 284 NLNAIGVHVNKSNKI-IAPNDCTNIPNIFAVGDVVEGRPELTPVAIKAGIL 333
Score = 38.7 bits (90), Expect = 0.016
Identities = 31/108 (28%), Positives = 47/108 (43%), Gaps = 30/108 (27%)
Query: 537 LGGTCLNVGCIPSKALLNNSHYY-HMAHS--GDMKARGIE----------VEGVK----- 578
LGGTC+NVGC+P K + HY ++ D + G + V V+
Sbjct: 48 LGGTCVNVGCVPKKLM----HYAANIGSIFHHDSQMYGWKTSSSFNWGKLVTTVQNHIRS 103
Query: 579 LNLETMMGTKSAAVKALTGGIAHL-------FKSNKALKIITKQIILI 619
LN G +S+ V+ + G+A L + N + IT + ILI
Sbjct: 104 LNFSYRTGLRSSKVEYIN-GLAKLKDEHTVSYGDNSQEETITAKYILI 150
Score = 34.4 bits (79), Expect = 0.38
Identities = 17/42 (40%), Positives = 23/42 (54%)
Query: 487 DKVLGVHIIGPAAGELINEAVLAMEYGASCEDVARTCHAHPT 528
+KV+G H +GP AGE+ LA++ GA D HPT
Sbjct: 428 NKVVGFHFVGPNAGEITQGFSLALKLGAKKSDFDSMIGIHPT 469
>gnl|CDD|179902 PRK04965, PRK04965, NADH:flavorubredoxin oxidoreductase; Provisional.
Length = 377
Score = 65.3 bits (160), Expect = 6e-11
Identities = 33/111 (29%), Positives = 53/111 (47%), Gaps = 14/111 (12%)
Query: 949 EVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGR 1008
EV+ + Q L + G+ L +++ G K+ I T+ + DA++ G
Sbjct: 184 EVSSRLQHRLTEMGVHLLLKSQLQGLEKTDSGIRATL------DSGRSIEVDAVIAAAGL 237
Query: 1009 RPYTHNLGL-EEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDC--IHGPMLA 1056
RP N L G+ +G V V+S QT P+I+A+GDC I+G +L
Sbjct: 238 RP---NTALARRAGLAV-NRGIV-VDSYLQTSAPDIYALGDCAEINGQVLP 283
>gnl|CDD|223566 COG0492, TrxB, Thioredoxin reductase [Posttranslational modification,
protein turnover, chaperones].
Length = 305
Score = 62.3 bits (152), Expect = 3e-10
Identities = 43/202 (21%), Positives = 71/202 (35%), Gaps = 47/202 (23%)
Query: 879 GSTEEVKTKNILIATGSE----------------VTPFP---GIEVDEETIVSSTG---- 915
+ K ++IATG+ V+ G ++ +V G
Sbjct: 97 TDKGTYEAKAVIIATGAGARKLGVPGEEEFEGKGVSYCATCDGFFKGKDVVVIGGGDSAV 156
Query: 916 --ALSLKKGSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGK-QGMQFKLGTKVT 972
AL L K + +VT + + + L K ++ T V
Sbjct: 157 EEALYLSK------IAKKVTLV-------HRRDEFRAEEILVERLKKNVKIEVLTNTVVK 203
Query: 973 GASKSGDNIT-VTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVP 1031
GD++ V ++NVK K EL D + + +G + N L + DE G +
Sbjct: 204 --EILGDDVEGVVLKNVKGEEK--ELPVDGVFIAIG---HLPNTELLKGLGVLDENGYIV 256
Query: 1032 VNSRFQTVIPNIFAIGDCIHGP 1053
V+ +T +P IFA GD
Sbjct: 257 VDEEMETSVPGIFAAGDVADKN 278
>gnl|CDD|237197 PRK12770, PRK12770, putative glutamate synthase subunit beta;
Provisional.
Length = 352
Score = 59.2 bits (144), Expect = 5e-09
Identities = 31/111 (27%), Positives = 50/111 (45%), Gaps = 10/111 (9%)
Query: 956 RILGK---QGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYT 1012
RI+G+ +G++ ++ +SG V I P + L D ++ +G P T
Sbjct: 235 RIIGEGRVEGVEL-AKMRLGEPDESGRPRPVPI-----PGSEFVLEADTVVFAIGEIP-T 287
Query: 1013 HNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGPMLAHKAEDEG 1063
E +GIE + KG + V+ + T +FA GD + GP KA G
Sbjct: 288 PPFAKECLGIELNRKGEIVVDEKHMTSREGVFAAGDVVTGPSKIGKAIKSG 338
>gnl|CDD|224171 COG1251, NirB, NAD(P)H-nitrite reductase [Energy production and
conversion].
Length = 793
Score = 60.4 bits (147), Expect = 5e-09
Identities = 56/226 (24%), Positives = 88/226 (38%), Gaps = 48/226 (21%)
Query: 851 LFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEVKTKNILIATGSE--VTPFPGIEV--- 905
L+ KV Q++ V G V ++IATGS + P PG ++
Sbjct: 76 LYTGEKVIQID-------RANKVVTTDAG--RTVSYDKLIIATGSYPFILPIPGSDLPGV 126
Query: 906 -------DEETIVSSTGALSLKKGSVWG-------------RLGAEVTAIEFMNAIGGMG 945
D E ++ A + KK V G LG EVT + +
Sbjct: 127 FVYRTIDDVEAMLD--CARNKKKAVVIGGGLLGLEAARGLKDLGMEVTVVHIAPTLMERQ 184
Query: 946 IDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVC 1005
+D + +R L G++ L G++ + D T E+ D +++
Sbjct: 185 LDRTAGRLLRRKLEDLGIKVLLEKNTE--EIVGEDKVEGVR-FADGT---EIPADLVVMA 238
Query: 1006 VGRRPYTHNLGL-EEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCI 1050
VG RP N L +E G+ +G V VN QT P+I+A+G+C
Sbjct: 239 VGIRP---NDELAKEAGL-AVNRGIV-VNDYMQTSDPDIYAVGECA 279
>gnl|CDD|224172 COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy
production and conversion].
Length = 405
Score = 59.2 bits (144), Expect = 6e-09
Identities = 43/155 (27%), Positives = 62/155 (40%), Gaps = 19/155 (12%)
Query: 926 GRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTI 985
V +E I M +++K +R L K G++ LGT VT + G
Sbjct: 188 DPSELRVILVEAGPRILPM-FPPKLSKYAERALEKLGVEVLLGTPVTEVTPDG------- 239
Query: 986 ENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTV-IPNIF 1044
V +EE+ D ++ G R L + G+E D +GR+ VN Q P+IF
Sbjct: 240 --VTLKDGEEEIPADTVVWAAGVRA--SPLLKDLSGLETDRRGRLVVNPTLQVPGHPDIF 295
Query: 1045 AIGDC---IHG---PMLAHKAEDEGIVCVEGIAGD 1073
A GDC I P A A +G + I
Sbjct: 296 AAGDCAAVIDPRPVPPTAQAAHQQGEYAAKNIKAR 330
>gnl|CDD|162827 TIGR02374, nitri_red_nirB, nitrite reductase [NAD(P)H], large
subunit. [Central intermediary metabolism, Nitrogen
metabolism].
Length = 785
Score = 55.6 bits (134), Expect = 1e-07
Identities = 53/218 (24%), Positives = 82/218 (37%), Gaps = 61/218 (27%)
Query: 873 TVIKSDGSTEEVKTK--------NILIATGSE--VTPFPG-----------IEVDEETIV 911
TVI+ D ++V T +++ATGS + P PG IE D + I+
Sbjct: 76 TVIQIDTDQKQVITDAGRTLSYDKLILATGSYPFILPIPGADKKGVYVFRTIE-DLDAIM 134
Query: 912 SSTGALSLKKGSVWG-------------RLGAEVTAIEFMNAIGGMGIDGEVAKQFQRIL 958
+ A KK +V G LG +V+ I + +D + QR L
Sbjct: 135 A--MAQRFKKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLMAKQLDQTAGRLLQREL 192
Query: 959 GKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKK-------EELSCDALLVCVGRRPY 1011
++G+ F L T+E V L D +++ G RP
Sbjct: 193 EQKGLTFLLEKD-------------TVEIVGATKADRIRFKDGSSLEADLIVMAAGIRPN 239
Query: 1012 THNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDC 1049
L + GI + VN QT P+I+A+G+C
Sbjct: 240 D-ELAVSA-GI--KVNRGIIVNDSMQTSDPDIYAVGEC 273
>gnl|CDD|163244 TIGR03385, CoA_CoA_reduc, CoA-disulfide reductase. Members of this
protein family are CoA-disulfide reductase (EC 1.8.1.14),
as characterized in Staphylococcus aureus, Pyrococcus
horikoshii, and Borrelia burgdorferi, and inferred in
several other species on the basis of high levels of CoA
and an absence of glutathione as a protective thiol
[Cellular processes, Detoxification].
Length = 427
Score = 53.6 bits (129), Expect = 4e-07
Identities = 31/122 (25%), Positives = 51/122 (41%), Gaps = 10/122 (8%)
Query: 929 GAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENV 988
G VT I I D E+ + + L K + +L +V S G+
Sbjct: 160 GKNVTLIHRSERILNKLFDEEMNQIVEEELKKHEINLRLNEEVD--SIEGEERVKVF--- 214
Query: 989 KDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGD 1048
T D +++ G +P + ++ G++ E G + VN +FQT +PNI+A GD
Sbjct: 215 ---TSGGVYQADMVILATGIKPNSELA--KDSGLKLGETGAIWVNEKFQTSVPNIYAAGD 269
Query: 1049 CI 1050
Sbjct: 270 VA 271
>gnl|CDD|215691 pfam00070, Pyr_redox, Pyridine nucleotide-disulphide
oxidoreductase. This family includes both class I and
class II oxidoreductases and also NADH oxidases and
peroxidases. This domain is actually a small NADH
binding domain within a larger FAD binding domain.
Length = 82
Score = 48.0 bits (115), Expect = 5e-07
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 922 GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNI 981
S +LG++VT +E + + D E+AK Q L K G++ L T V +GD +
Sbjct: 15 ASALAKLGSKVTVVERRDRLLRG-FDEEIAKILQEKLEKNGIEVLLNTTVEEIEGNGDGV 73
Query: 982 TVTIEN 987
V ++
Sbjct: 74 VVKLKT 79
>gnl|CDD|237213 PRK12810, gltD, glutamate synthase subunit beta; Reviewed.
Length = 471
Score = 50.2 bits (121), Expect = 4e-06
Identities = 36/122 (29%), Positives = 46/122 (37%), Gaps = 20/122 (16%)
Query: 955 QRILGKQGMQFKLGTKVTGASKSGDNITVTIE-NVKDPTKKE----ELSCDALLVCVGRR 1009
+ G+ G KVTG V E D E L D +L+ +G
Sbjct: 353 KEFEGENG-------KVTGV------KVVRTELGEGDFEPVEGSEFVLPADLVLLAMGFT 399
Query: 1010 PYTHNLGLEEIGIEKDEKGRVPVNSR-FQTVIPNIFAIGDCIHGPMLAHKAEDEGIVCVE 1068
L L + G+E DE+GRV +QT P +FA GD G L A EG
Sbjct: 400 GPEAGL-LAQFGVELDERGRVAAPDNAYQTSNPKVFAAGDMRRGQSLVVWAIAEGRQAAR 458
Query: 1069 GI 1070
I
Sbjct: 459 AI 460
>gnl|CDD|184103 PRK13512, PRK13512, coenzyme A disulfide reductase; Provisional.
Length = 438
Score = 49.4 bits (118), Expect = 7e-06
Identities = 22/51 (43%), Positives = 33/51 (64%), Gaps = 2/51 (3%)
Query: 1000 DALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCI 1050
D ++ VG P + + E I+ D+KG +PVN +F+T +PNI+AIGD I
Sbjct: 231 DMIIEGVGTHPNSKFI--ESSNIKLDDKGFIPVNDKFETNVPNIYAIGDII 279
>gnl|CDD|130385 TIGR01318, gltD_gamma_fam, glutamate synthase small subunit family
protein, proteobacterial. This model represents one of
three built for the NADPH-dependent or NADH-dependent
glutamate synthase (EC 1.4.1.13 and 1.4.1.14,
respectively) small subunit and homologs. TIGR01317
describes the small subunit (or equivalent region from
longer forms) in eukaryotes, Gram-positive bacteria, and
some other lineages, both NADH and NADPH-dependent.
TIGR01316 describes a protein of similar length, from
Archaea and a number of bacterial lineages, that forms
glutamate synthase homotetramers without a large subunit.
This model describes both glutatate synthase small
subunit and closely related paralogs of unknown function
from a number of gamma and alpha subdivision
Proteobacteria, including E. coli.
Length = 467
Score = 49.4 bits (118), Expect = 8e-06
Identities = 26/80 (32%), Positives = 35/80 (43%), Gaps = 7/80 (8%)
Query: 996 ELSCDALLVCVGRRPYTHNLG-LEEIGIEKDEKGRVPVNS----RFQTVIPNIFAIGDCI 1050
L D +++ G +P H + L GI D GR+ +QT P IFA GD +
Sbjct: 384 VLPADVVIMAFGFQP--HAMPWLAGHGITLDSWGRIITGDVSYLPYQTTNPKIFAGGDAV 441
Query: 1051 HGPMLAHKAEDEGIVCVEGI 1070
G L A EG +GI
Sbjct: 442 RGADLVVTAVAEGRQAAQGI 461
Score = 29.8 bits (67), Expect = 8.8
Identities = 21/85 (24%), Positives = 31/85 (36%), Gaps = 13/85 (15%)
Query: 895 SEVTPFPGIEVDEETIVSSTGALSLKKGSVWGRLGAEVTAIEFMNAIGGM---GI----- 946
S V P + V G L + R G +V + IGG+ GI
Sbjct: 135 SHVVP-----TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTFGIPSFKL 189
Query: 947 DGEVAKQFQRILGKQGMQFKLGTKV 971
D V + + I G++F L +V
Sbjct: 190 DKAVLSRRREIFTAMGIEFHLNCEV 214
>gnl|CDD|181958 PRK09564, PRK09564, coenzyme A disulfide reductase; Reviewed.
Length = 444
Score = 49.3 bits (118), Expect = 9e-06
Identities = 33/122 (27%), Positives = 54/122 (44%), Gaps = 9/122 (7%)
Query: 928 LGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIEN 987
LG V I+ + I D E+ + L + G++ L V + D + +
Sbjct: 171 LGKNVRIIQLEDRILPDSFDKEITDVMEEELRENGVELHLNEFVK-SLIGEDKVEGVV-- 227
Query: 988 VKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIG 1047
T K E D ++V G +P T LE+ G++ + G + V+ +T I NI+A G
Sbjct: 228 ----TDKGEYEADVVIVATGVKPNTE--FLEDTGLKTLKNGAIIVDEYGETSIENIYAAG 281
Query: 1048 DC 1049
DC
Sbjct: 282 DC 283
>gnl|CDD|234134 TIGR03169, Nterm_to_SelD, pyridine nucleotide-disulfide
oxidoreductase family protein. Members of this protein
family include N-terminal sequence regions of (probable)
bifunctional proteins whose C-terminal sequences are
SelD, or selenide,water dikinase, the selenium donor
protein necessary for selenium incorporation into protein
(as selenocysteine), tRNA (as 2-selenouridine), or both.
However, some members of this family occur in species
that do not show selenium incorporation, and the function
of this protein family is unknown.
Length = 364
Score = 48.0 bits (115), Expect = 1e-05
Identities = 27/103 (26%), Positives = 44/103 (42%), Gaps = 14/103 (13%)
Query: 950 VAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRR 1009
V + R+L ++G++ G VT + + + L DA+L G R
Sbjct: 193 VRRLVLRLLARRGIEVHEGAPVTRGPDG----ALILADG------RTLPADAILWATGAR 242
Query: 1010 PYTHNLGLEEIGIEKDEKGRVPVNSRFQTVI-PNIFAIGDCIH 1051
L E G+ DE G + V+ Q++ P++FA GDC
Sbjct: 243 APPW---LAESGLPLDEDGFLRVDPTLQSLSHPHVFAAGDCAV 282
>gnl|CDD|233345 TIGR01292, TRX_reduct, thioredoxin-disulfide reductase. This model
describes thioredoxin-disulfide reductase, a member of
the pyridine nucleotide-disulphide oxidoreductases
(pfam00070) [Energy metabolism, Electron transport].
Length = 299
Score = 46.9 bits (112), Expect = 3e-05
Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 7/92 (7%)
Query: 977 SGDNI--TVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNS 1034
GDN V I+N ++EEL D + + +G P N L + +E DE G + +
Sbjct: 203 VGDNKVEGVKIKNTVT-GEEEELEVDGVFIAIGHEP---NTELLKGLLELDENGYIVTDE 258
Query: 1035 RFQTVIPNIFAIGDC-IHGPMLAHKAEDEGIV 1065
+T +P +FA GD G A A +G +
Sbjct: 259 GMRTSVPGVFAAGDVRDKGYRQAVTAAGDGCI 290
>gnl|CDD|236630 PRK09853, PRK09853, putative selenate reductase subunit YgfK;
Provisional.
Length = 1019
Score = 46.9 bits (112), Expect = 7e-05
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 995 EELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGP 1053
L D ++ +G + T L+ GI D+KG V++ +T + N++ IGD GP
Sbjct: 764 VTLEADTVITAIGEQVDTE--LLKANGIPLDKKGWPVVDANGETSLTNVYMIGDVQRGP 820
>gnl|CDD|223567 COG0493, GltD, NADPH-dependent glutamate synthase beta chain and
related oxidoreductases [Amino acid transport and
metabolism / General function prediction only].
Length = 457
Score = 45.7 bits (109), Expect = 1e-04
Identities = 25/96 (26%), Positives = 42/96 (43%), Gaps = 3/96 (3%)
Query: 978 GDNITVTIENVKDPTKKEE--LSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSR 1035
G+ + E + D +++ +G + L E G++ D++GR+ V+
Sbjct: 351 GEYVDGWGRRGPVGVIGTEKTDAADTVILAIGFEGDATDGLLLEFGLKLDKRGRIKVDEN 410
Query: 1036 F-QTVIPNIFAIGDCIHGPMLAHKAEDEGIVCVEGI 1070
QT IP +FA GD + G L A EG + I
Sbjct: 411 LQQTSIPGVFAGGDAVRGAALVVWAIAEGREAAKAI 446
>gnl|CDD|172486 PRK13984, PRK13984, putative oxidoreductase; Provisional.
Length = 604
Score = 42.4 bits (100), Expect = 0.001
Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 5/83 (6%)
Query: 990 DPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDE--KGRVPVNSRFQTVIPNIFAIG 1047
D + + + D ++ +G+ P L EE+ K E +GR+ N QT IP +FA G
Sbjct: 518 DESDQIIVEADMVVEAIGQAPDYSYLP-EELK-SKLEFVRGRILTNEYGQTSIPWLFAGG 575
Query: 1048 DCIHGPMLAHKAEDEGIVCVEGI 1070
D +HGP + H D G EGI
Sbjct: 576 DIVHGPDIIHGVAD-GYWAAEGI 597
>gnl|CDD|130383 TIGR01316, gltA, glutamate synthase (NADPH), homotetrameric. This
protein is homologous to the small subunit of NADPH and
NADH forms of glutamate synthase as found in eukaryotes
and some bacteria. This protein is found in numerous
species having no homolog of the glutamate synthase large
subunit. The prototype of the family, from Pyrococcus sp.
KOD1, was shown to be active as a homotetramer and to
require NADPH [Amino acid biosynthesis, Glutamate
family].
Length = 449
Score = 42.2 bits (99), Expect = 0.001
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Query: 986 ENVKDPTKKEE--LSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNI 1043
E P E L DA++V +G + + E ++ E+G + V+ +T IP +
Sbjct: 361 ERRFLPCGDAECKLEADAVIVAIGNGS--NPIMAETTRLKTSERGTIVVDEDQRTSIPGV 418
Query: 1044 FAIGDCIHG 1052
FA GD I G
Sbjct: 419 FAGGDIILG 427
>gnl|CDD|132358 TIGR03315, Se_ygfK, putative selenate reductase, YgfK subunit.
Members of this protein family are YgfK, predicted to be
one subunit of a three-subunit, molybdopterin-containing
selenate reductase. This enzyme is found, typically, in
genomic regions associated with xanthine dehydrogenase
homologs predicted to belong to the selenium-dependent
molybdenum hydroxylases (SDMH). Therefore, the selenate
reductase is suggested to play a role in furnishing
selenide for SelD, the selenophosphate synthase.
Length = 1012
Score = 42.5 bits (100), Expect = 0.001
Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 996 ELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRF-QTVIPNIFAIGDCIHGP 1053
+L D ++ VG + T L++ GI DE G VN +T I N+F IGD GP
Sbjct: 762 DLPADTVIAAVGEQVDTD--LLQKNGIPLDEYGWPVVNQATGETNITNVFVIGDANRGP 818
>gnl|CDD|237198 PRK12771, PRK12771, putative glutamate synthase (NADPH) small
subunit; Provisional.
Length = 564
Score = 41.8 bits (99), Expect = 0.002
Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 3/77 (3%)
Query: 995 EELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQ-TVIPNIFAIGDCIHGP 1053
E L D +++ +G+ + GLE + + +G V V+ F T P +FA GD + GP
Sbjct: 365 ETLEADLVVLAIGQD--IDSAGLESVPGVEVGRGVVQVDPNFMMTGRPGVFAGGDMVPGP 422
Query: 1054 MLAHKAEDEGIVCVEGI 1070
A G I
Sbjct: 423 RTVTTAIGHGKKAARNI 439
>gnl|CDD|139246 PRK12814, PRK12814, putative NADPH-dependent glutamate synthase small
subunit; Provisional.
Length = 652
Score = 38.9 bits (91), Expect = 0.013
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 1021 GIEKDEKGRVPVNSR-FQTVIPNIFAIGDCIHGPMLAHKAEDEG 1063
GI G V V+ QT + +FA GDC+ G +A A ++G
Sbjct: 446 GIGTSRNGTVKVDPETLQTSVAGVFAGGDCVTGADIAINAVEQG 489
>gnl|CDD|183733 PRK12769, PRK12769, putative oxidoreductase Fe-S binding subunit;
Reviewed.
Length = 654
Score = 39.0 bits (91), Expect = 0.015
Identities = 28/77 (36%), Positives = 39/77 (50%), Gaps = 7/77 (9%)
Query: 1000 DALLVCVGRRPYTHNLG-LEEIGIEKDEKGRV--PVNSRF--QTVIPNIFAIGDCIHGPM 1054
DA+++ G P H + LE G+ D+ GR+ V S++ QT P IFA GD + G
Sbjct: 574 DAVIMAFGFNP--HGMPWLESHGVTVDKWGRIIADVESQYRYQTSNPKIFAGGDAVRGAD 631
Query: 1055 LAHKAEDEGIVCVEGIA 1071
L A EG +GI
Sbjct: 632 LVVTAMAEGRHAAQGII 648
>gnl|CDD|223652 COG0579, COG0579, Predicted dehydrogenase [General function
prediction only].
Length = 429
Score = 38.0 bits (89), Expect = 0.024
Identities = 22/89 (24%), Positives = 36/89 (40%), Gaps = 8/89 (8%)
Query: 948 GEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVG 1007
GE+ + G++ +L T+VTG K D + V + +E L ++ G
Sbjct: 153 GELTRALAEEAQANGVELRLNTEVTGIEKQSDGVFVLNTS----NGEETLEAKFVINAAG 208
Query: 1008 RRPYTHNLGLEEIGIEKDEKGRVPVNSRF 1036
Y L + GI +D K PV +
Sbjct: 209 L--YADPL-AQMAGIPEDFKI-FPVRGEY 233
>gnl|CDD|170080 PRK09754, PRK09754, phenylpropionate dioxygenase ferredoxin reductase
subunit; Provisional.
Length = 396
Score = 37.6 bits (87), Expect = 0.031
Identities = 40/227 (17%), Positives = 81/227 (35%), Gaps = 43/227 (18%)
Query: 849 AHLFKSNKVTQLNGHG-KITGPNTVTVIKSDGSTEEVKTKNILIATGSEVTPFP------ 901
A+ ++ N V +G K G +T ++ ++G E + IATG+ P P
Sbjct: 65 ANWWQENNVHLHSGVTIKTLGRDTRELVLTNG--ESWHWDQLFIATGAAARPLPLLDALG 122
Query: 902 -----------------GIEVDEETIVSSTGALSLKKGSVWGRLGAEVTAIEFMNAIGGM 944
++ + ++ G + L+ + + +VT IE + G
Sbjct: 123 ERCFTLRHAGDAARLREVLQPERSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMGR 182
Query: 945 GIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLV 1004
V + + + G++ L + G+ + +T+++ E L D ++
Sbjct: 183 NAPPPVQRYLLQRHQQAGVRILLNNAIEHVVD-GEKVELTLQS------GETLQADVVIY 235
Query: 1005 CVG---RRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGD 1048
+G L D + ++ +T P IFA GD
Sbjct: 236 GIGISANDQLAREANL-------DTANGIVIDEACRTCDPAIFAGGD 275
>gnl|CDD|185553 PTZ00318, PTZ00318, NADH dehydrogenase-like protein; Provisional.
Length = 424
Score = 37.1 bits (86), Expect = 0.052
Identities = 40/146 (27%), Positives = 60/146 (41%), Gaps = 34/146 (23%)
Query: 931 EVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKD 990
+VT +E + + G D + K QR L + G+ + T V + V D
Sbjct: 212 KVTVLEAGSEVLGS-FDQALRKYGQRRLRRLGVDIRTKTAV--------------KEVLD 256
Query: 991 P---TKK-EELSCDALLVC---VGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTV-IPN 1042
K E + L+V VG P T L ++K +GR+ V+ + IPN
Sbjct: 257 KEVVLKDGEVIPT-GLVVWSTGVGPGPLTKQLK-----VDKTSRGRISVDDHLRVKPIPN 310
Query: 1043 IFAIGDCIHG-----PMLAHKAEDEG 1063
+FA+GDC P LA A +G
Sbjct: 311 VFALGDCAANEERPLPTLAQVASQQG 336
>gnl|CDD|223861 COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily [General function
prediction only].
Length = 292
Score = 36.6 bits (84), Expect = 0.065
Identities = 37/191 (19%), Positives = 62/191 (32%), Gaps = 18/191 (9%)
Query: 643 AMKYYEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAAYHLARQYENSGQFDEAIHFY 702
L+ + +AAEL +A+ S +A +Y
Sbjct: 41 LKSALLNGAGSAYPPDYAKALKSYEKAAELGDAAALALLGQMYGAGKGVSRDKTKAADWY 100
Query: 703 SVAGSCGNAVRLC--GQLDAVESIASELNVQSDQDLILKCASYFARREHHDRAVQMYAIA 760
A + G A L G + A+ V D LK A+ + + A+ MY +
Sbjct: 101 RCAAADGLAEALFNLGLM-----YANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLG 155
Query: 761 RRYDQALSLIQTKHVPLSEELADLLVPP--ESDDQRQVVLNTLGNCAA----VQANYHLA 814
Y L Q V ++ A L E + +L LG V + A
Sbjct: 156 LAYLSGL---QALAVAYDDKKALYLYRKAAELGNPDAQLL--LGRMYEKGLGVPRDLKKA 210
Query: 815 TKLFTQAGDKG 825
+ + +A ++G
Sbjct: 211 FRWYKKAAEQG 221
Score = 30.8 bits (69), Expect = 3.4
Identities = 13/74 (17%), Positives = 21/74 (28%)
Query: 69 AMKYYEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAAYHLARQYENSGQFDEAIHFY 128
L+ + +AAEL +A+ S +A +Y
Sbjct: 41 LKSALLNGAGSAYPPDYAKALKSYEKAAELGDAAALALLGQMYGAGKGVSRDKTKAADWY 100
Query: 129 SVAGSCGNAVRLCK 142
A + G A L
Sbjct: 101 RCAAADGLAEALFN 114
Score = 29.6 bits (66), Expect = 9.7
Identities = 15/53 (28%), Positives = 21/53 (39%), Gaps = 8/53 (15%)
Query: 89 LQDFSRAAELANASGDTAAAYHLARQYENSGQ----FDEAIHFYSVAGSCGNA 137
L + +AAEL G+ A L R YE +A +Y A G+
Sbjct: 175 LYLYRKAAEL----GNPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGDG 223
Score = 29.6 bits (66), Expect = 9.7
Identities = 15/53 (28%), Positives = 21/53 (39%), Gaps = 8/53 (15%)
Query: 663 LQDFSRAAELANASGDTAAAYHLARQYENSGQ----FDEAIHFYSVAGSCGNA 711
L + +AAEL G+ A L R YE +A +Y A G+
Sbjct: 175 LYLYRKAAEL----GNPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGDG 223
>gnl|CDD|236967 PRK11749, PRK11749, dihydropyrimidine dehydrogenase subunit A;
Provisional.
Length = 457
Score = 36.7 bits (86), Expect = 0.071
Identities = 11/58 (18%), Positives = 24/58 (41%), Gaps = 2/58 (3%)
Query: 996 ELSCDALLVCVGRRPYT-HNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHG 1052
L D ++ +G+ P + + + + + +T +P +FA GD + G
Sbjct: 373 TLPADLVIKAIGQTPNPLILSTTPGLELNRW-GTIIADDETGRTSLPGVFAGGDIVTG 429
>gnl|CDD|226160 COG3634, AhpF, Alkyl hydroperoxide reductase, large subunit
[Posttranslational modification, protein turnover,
chaperones].
Length = 520
Score = 36.3 bits (84), Expect = 0.094
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Query: 978 GDNITVTIENVKDPTKKEE--LSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSR 1035
GD VT +D EE L + + V +G P T L + +E + +G + V++R
Sbjct: 418 GDGDKVTGLEYRDRVSGEEHHLELEGVFVQIGLLPNTEWL---KGAVELNRRGEIIVDAR 474
Query: 1036 FQTVIPNIFAIGDC 1049
+T +P +FA GDC
Sbjct: 475 GETNVPGVFAAGDC 488
>gnl|CDD|222355 pfam13738, Pyr_redox_3, Pyridine nucleotide-disulphide
oxidoreductase.
Length = 202
Score = 35.4 bits (82), Expect = 0.096
Identities = 13/70 (18%), Positives = 26/70 (37%), Gaps = 6/70 (8%)
Query: 949 EVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGR 1008
E+A + + + G+ +L T+VT + G V + + E + D ++ G
Sbjct: 83 EIAAYLEDLARRYGLPIRLSTRVTAVERDGGRFVVRLTD------GETVRADYVVDATGA 136
Query: 1009 RPYTHNLGLE 1018
G
Sbjct: 137 FSVPKPPGFP 146
>gnl|CDD|226655 COG4192, COG4192, Signal transduction histidine kinase regulating
phosphoglycerate transport system [Signal transduction
mechanisms].
Length = 673
Score = 36.1 bits (83), Expect = 0.12
Identities = 32/126 (25%), Positives = 51/126 (40%), Gaps = 11/126 (8%)
Query: 707 SCGNAVRLCGQLDAVESIASELNVQSDQDLILKCASYFARREHHDRAVQMYAIARRYDQA 766
S A+ A S+ N+ I+ FAR+ D ++Q + +QA
Sbjct: 475 SARLALEEAPSAQAATSLDKIENLTERMGKIVNSLRQFARKNSSDESLQPVRLNSVVEQA 534
Query: 767 LSLIQTKHVP----LSEELADLLVPPESDDQRQVVLNTLGNCAAVQANYHLA-----TKL 817
L+QTKH L DL+V ++ QV++N + N A+ A+ H A L
Sbjct: 535 WELLQTKHKRRQIKLINPTDDLMVMGDAVSIEQVLVNLIVN--ALDASTHFAPWIKLIAL 592
Query: 818 FTQAGD 823
T+
Sbjct: 593 GTEQEM 598
>gnl|CDD|234119 TIGR03140, AhpF, alkyl hydroperoxide reductase subunit F. This
enzyme is the partner of the peroxiredoxin (alkyl
hydroperoxide reductase) AhpC which contains the
peroxide-reactive cysteine. AhpF contains the reductant
(NAD(P)H) binding domain (pfam00070) and presumably acts
to resolve the disulfide which forms after oxidation of
the active site cysteine in AphC. This proteins contains
two paired conserved cysteine motifs, CxxCP and CxHCDGP
[Cellular processes, Detoxification, Cellular processes,
Adaptations to atypical conditions].
Length = 515
Score = 35.0 bits (81), Expect = 0.24
Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 5/74 (6%)
Query: 978 GDNITVTIENVKDPTKKEE--LSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSR 1035
GD VT +D EE L D + V +G P N + +E + +G + ++ R
Sbjct: 416 GDGDKVTGIRYQDRNSGEEKQLDLDGVFVQIGLVP---NTEWLKDAVELNRRGEIVIDER 472
Query: 1036 FQTVIPNIFAIGDC 1049
+T +P IFA GD
Sbjct: 473 GRTSVPGIFAAGDV 486
>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat.
Length = 78
Score = 31.6 bits (72), Expect = 0.28
Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 16/66 (24%)
Query: 64 EDMDLAMKYYEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAAYH-LARQYENSGQFD 122
D D A++ E+A + A EL +TA A + LAR Y G +D
Sbjct: 19 GDYDEALELLEKALE---------------LARELGEDHPETARALNNLARLYLALGDYD 63
Query: 123 EAIHFY 128
EA+ +
Sbjct: 64 EALEYL 69
Score = 31.6 bits (72), Expect = 0.28
Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 16/66 (24%)
Query: 638 EDMDLAMKYYEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAAYH-LARQYENSGQFD 696
D D A++ E+A + A EL +TA A + LAR Y G +D
Sbjct: 19 GDYDEALELLEKALE---------------LARELGEDHPETARALNNLARLYLALGDYD 63
Query: 697 EAIHFY 702
EA+ +
Sbjct: 64 EALEYL 69
>gnl|CDD|183292 PRK11728, PRK11728, hydroxyglutarate oxidase; Provisional.
Length = 393
Score = 34.0 bits (79), Expect = 0.38
Identities = 13/60 (21%), Positives = 25/60 (41%), Gaps = 7/60 (11%)
Query: 948 GEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVG 1007
VA+ ++ +G + +LG +VT + + + V T + E L+ C G
Sbjct: 149 RAVAEAMAELIQARGGEIRLGAEVTALDEHANGVVVR-------TTQGEYEARTLINCAG 201
>gnl|CDD|216593 pfam01593, Amino_oxidase, Flavin containing amine oxidoreductase.
This family consists of various amine oxidases, including
maze polyamine oxidase (PAO) and various flavin
containing monoamine oxidases (MAO). The aligned region
includes the flavin binding site of these enzymes. The
family also contains phytoene dehydrogenases and related
enzymes. In vertebrates MAO plays an important role
regulating the intracellular levels of amines via there
oxidation; these include various neurotransmitters,
neurotoxins and trace amines. In lower eukaryotes such as
aspergillus and in bacteria the main role of amine
oxidases is to provide a source of ammonium. PAOs in
plants, bacteria and protozoa oxidase spermidine and
spermine to an aminobutyral, diaminopropane and hydrogen
peroxide and are involved in the catabolism of
polyamines. Other members of this family include
tryptophan 2-monooxygenase, putrescine oxidase,
corticosteroid binding proteins and antibacterial
glycoproteins.
Length = 444
Score = 34.1 bits (78), Expect = 0.49
Identities = 17/73 (23%), Positives = 30/73 (41%), Gaps = 9/73 (12%)
Query: 935 IEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKK 994
+G ++ +LG + +L T+V +KSGD +TVT +
Sbjct: 194 FPGGGFTLPLGGLPQLIAAALGLLGGR---VRLNTRVRSITKSGDGVTVTTVD------G 244
Query: 995 EELSCDALLVCVG 1007
+ DA++V V
Sbjct: 245 RTIEADAVIVTVP 257
>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only].
Length = 291
Score = 33.7 bits (75), Expect = 0.53
Identities = 24/125 (19%), Positives = 47/125 (37%), Gaps = 3/125 (2%)
Query: 7 MKNGDIDRAIRMFEKAETHQQHVPRMLLENTDKLEKYIIQSKDPVLLKWWAQYIESTEDM 66
+ GD + A+ ++EKA + + + L+ + ++ D
Sbjct: 141 YELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPD- 199
Query: 67 DLAMKYYEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAAYHLARQYENSGQFDEAIH 126
D A YL + + L+ + +A EL + A Y+LA G+++EA+
Sbjct: 200 DDAEALLNLGLLYLKLGKYEEALEYYEKALELDP--DNAEALYNLALLLLELGRYEEALE 257
Query: 127 FYSVA 131
A
Sbjct: 258 ALEKA 262
>gnl|CDD|184951 PRK14989, PRK14989, nitrite reductase subunit NirD; Provisional.
Length = 847
Score = 33.6 bits (77), Expect = 0.64
Identities = 33/135 (24%), Positives = 53/135 (39%), Gaps = 6/135 (4%)
Query: 915 GALSLKKGSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGA 974
G L L+ LG E IEF + +D +Q +R + G++
Sbjct: 154 GLLGLEAAGALKNLGVETHVIEFAPMLMAEQLDQMGGEQLRRKIESMGVRVHTSKNTLEI 213
Query: 975 SKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNS 1034
+ G T+ EL D ++ G RP L + G+ +G + +N
Sbjct: 214 VQEGVEARKTMRFADG----SELEVDFIVFSTGIRP-QDKLA-TQCGLAVAPRGGIVIND 267
Query: 1035 RFQTVIPNIFAIGDC 1049
QT P+I+AIG+C
Sbjct: 268 SCQTSDPDIYAIGEC 282
>gnl|CDD|236875 PRK11189, PRK11189, lipoprotein NlpI; Provisional.
Length = 296
Score = 32.9 bits (76), Expect = 0.82
Identities = 20/101 (19%), Positives = 33/101 (32%), Gaps = 23/101 (22%)
Query: 623 YRVLLKWWAQYIESTEDMDLAMKYYEEARDYLS-------MVRVLCFLQDFSRAAELANA 675
YR L W ES D A + ++ + L +V +L S +
Sbjct: 167 YRAL---WLYLAESKLDPKQAKENLKQRYEKLDKEQWGWNIVEF--YLGKISEETLMERL 221
Query: 676 SGD-----------TAAAYHLARQYENSGQFDEAIHFYSVA 705
++LA+ Y + G DEA + +A
Sbjct: 222 KAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLA 262
>gnl|CDD|185761 cd09034, BRO1_Alix_like, Protein-interacting Bro1-like domain of
mammalian Alix and related domains. This superfamily
includes the Bro1-like domains of mammalian Alix
(apoptosis-linked gene-2 interacting protein X),
His-Domain type N23 protein tyrosine phosphatase
(HD-PTP, also known as PTPN23), RhoA-binding proteins
Rhophilin-1 and Rhophilin-2, Brox, Bro1 and Rim20 (also
known as PalA) from Saccharomyces cerevisiae, and
related domains. Alix, HD-PTP, Brox, Bro1 and Rim20
interact with the ESCRT (Endosomal Sorting Complexes
Required for Transport) system. Alix, also known as
apoptosis-linked gene-2 interacting protein 1 (AIP1),
participates in membrane remodeling processes during the
budding of enveloped viruses, vesicle budding inside
late endosomal multivesicular bodies (MVBs), and the
abscission reactions of mammalian cell division. It also
functions in apoptosis. HD-PTP functions in cell
migration and endosomal trafficking, Bro1 in endosomal
trafficking, and Rim20 in the response to the external
pH via the Rim101 pathway. Bro1-like domains are
boomerang-shaped, and part of the domain is a
tetratricopeptide repeat (TPR)-like structure. Bro1-like
domains bind components of the ESCRT-III complex: CHMP4
(in the case of Alix, HD-PTP, and Brox) and Snf7 (in the
case of yeast Bro1, and Rim20). The single domain
protein human Brox, and the isolated Bro1-like domains
of Alix, HD-PTP and Rhophilin can bind human
immunodeficiency virus type 1 (HIV-1) nucleocapsid.
Alix, HD-PTP, Bro1, and Rim20 also have a V-shaped (V)
domain, which in the case of Alix, has been shown to be
a dimerization domain and to contain a binding site for
the retroviral late assembly (L) domain YPXnL motif,
which is partially conserved in this superfamily. Alix,
HD-PTP and Bro1 also have a proline-rich region (PRR);
the Alix PRR binds multiple partners. Rhophilin-1, and
-2, in addition to this Bro1-like domain, have an
N-terminal Rho-binding domain and a C-terminal PDZ
(PS.D.-95, Disc-large, ZO-1) domain. HD-PTP is encoded
by the PTPN23 gene, a tumor suppressor gene candidate
frequently absent in human kidney, breast, lung, and
cervical tumors. This protein has a C-terminal,
catalytically inactive tyrosine phosphatase domain.
Length = 345
Score = 33.1 bits (76), Expect = 0.82
Identities = 22/95 (23%), Positives = 32/95 (33%), Gaps = 24/95 (25%)
Query: 71 KYYEEARDYLSMV-------------RVLCFLQDFSRAAELANASGDTAAAYHLARQYEN 117
KYYEEA LS V L + + +A A Y+ + +
Sbjct: 214 KYYEEALKCLSGVDLETIKNIPKKWLLFLKWKKCIFKAL----------AYYYHGLKLDE 263
Query: 118 SGQFDEAI-HFYSVAGSCGNAVRLCKEQALDDQLW 151
+ + EAI + + RLCK LD
Sbjct: 264 ANKIGEAIARLQAALELLKESERLCKSFLLDVWGN 298
>gnl|CDD|232901 TIGR00275, TIGR00275, flavoprotein, HI0933 family. The model when
searched with a partial length search brings in proteins
with a dinucleotide-binding motif (Rossman fold) over the
initial 40 residues of the model, including
oxidoreductases and dehydrogenases. Partially
characterized members include an FAD-binding protein from
Bacillus cereus and flavoprotein HI0933 from Haemophilus
influenzae [Unknown function, Enzymes of unknown
specificity].
Length = 400
Score = 32.9 bits (76), Expect = 0.90
Identities = 10/50 (20%), Positives = 17/50 (34%), Gaps = 7/50 (14%)
Query: 958 LGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVG 1007
L + G++ +KV K V T E D +++ G
Sbjct: 115 LKELGVEILTNSKVKSIKKDDGGFGV-------ETSGGEYEADKVIIATG 157
>gnl|CDD|188533 TIGR04018, Bthiol_YpdA, putative bacillithiol system oxidoreductase,
YpdA family. Members of this protein family, including
YpdA from Bacillus subtilis, are apparent oxidoreductases
present only in species with an active bacillithiol
system. They have been suggested actually to be thiol
disulfide oxidoreductases (TDOR), although the evidence
is incomplete [Unknown function, Enzymes of unknown
specificity].
Length = 316
Score = 32.5 bits (75), Expect = 1.00
Identities = 22/92 (23%), Positives = 36/92 (39%), Gaps = 21/92 (22%)
Query: 982 TVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPV-NSR-FQTV 1039
+VT+E + + D + G RP L E +G+E DE +PV N +T
Sbjct: 223 SVTLETPDG--EVHTIPNDFVFALTGYRPDFEFL--ESLGVELDEDTGIPVYNPETMETN 278
Query: 1040 IPNIFAIGDC---------------IHGPMLA 1056
+P ++ G H P++A
Sbjct: 279 VPGLYLAGVIAAGMDTNKIFIENGRFHAPLIA 310
>gnl|CDD|217890 pfam04097, Nic96, Nup93/Nic96. Nup93/Nic96 is a component of the
nuclear pore complex. It is required for the correct
assembly of the nuclear pore complex. In Saccharomyces
cerevisiae, Nic96 has been shown to be involved in the
distribution and cellular concentration of the GTPase
Gsp1. The structure of Nic96 has revealed a mostly alpha
helical structure.
Length = 607
Score = 32.7 bits (75), Expect = 1.4
Identities = 35/173 (20%), Positives = 59/173 (34%), Gaps = 37/173 (21%)
Query: 686 ARQYENSGQFDEAIHFYSVAGSCGNAVRL-CGQL-DAVESIA-SELNVQSDQDLILKCAS 742
A + ++ G+F++AI Y +AG V L L + A S L++ + DL+L
Sbjct: 415 AEEADDRGRFEDAILLYHLAGEYDKVVSLINKLLSQVLSQPALSSLSLSARDDLVLLAKE 474
Query: 743 ----YFARREHHDRAVQM----------------YAIARRYDQALSLI-QTKHVPLSEEL 781
Y A E D+ A ++QAL I + +PL
Sbjct: 475 ILELYKANPEVSDKVEPKNRETCRLLLRLAEIFDLYHAGNWEQALDAIEKLPLLPLDPSS 534
Query: 782 ADLLV------PPESDDQR---QVVLNTLGNCAAVQANYHLATKLFTQAGDKG 825
P E + ++L T+ L T ++ +G
Sbjct: 535 VRRCAEEFSNLPDE--VAKVIPDLLLATMTCL--SNLYKRLKTSIYGSSGRTD 583
>gnl|CDD|222125 pfam13434, K_oxygenase, L-lysine 6-monooxygenase (NADPH-requiring).
This is family of Rossmann fold oxidoreductases that
catalyzes the NADPH-dependent hydroxylation of lysine at
the N6 position, EC:1.14.13.59.
Length = 335
Score = 32.1 bits (74), Expect = 1.4
Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 955 QRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRP 1010
Q++LG ++ +V A +GD +T+ N + ++E L DA+++ G R
Sbjct: 281 QKVLGDPRVRLLPNREVQAAEATGDGYQLTLRNG-EQGEEETLDADAVVLATGYRY 335
>gnl|CDD|162300 TIGR01317, GOGAT_sm_gam, glutamate synthases, NADH/NADPH, small
subunit. This model represents one of three built for
the NADPH-dependent or NADH-dependent glutamate synthase
(EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or
homologous region. TIGR01316 describes a family in
several archaeal and deeply branched bacterial lineages
of a homotetrameric form for which there is no large
subunit. Another model describes glutamate synthase small
subunit from gamma and some alpha subdivision
Proteobacteria plus paralogs of unknown function. This
model describes the small subunit, or homologous region
of longer forms proteins, of eukaryotes, Gram-positive
bacteria, cyanobacteria, and some other lineages. All
members with known function participate in NADH or
NADPH-dependent reactions to interconvert between
glutamine plus 2-oxoglutarate and two molecules of
glutamate.
Length = 485
Score = 32.1 bits (73), Expect = 1.6
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 1017 LEEIGIEKDEKGRVPVNSRF-QTVIPNIFAIGDCIHGPMLAHKAEDEG 1063
L++ G++K +G + T IP +FA GDC G L A +EG
Sbjct: 420 LDDFGVKKTRRGNISAGYDDYSTSIPGVFAAGDCRRGQSLIVWAINEG 467
>gnl|CDD|222122 pfam13429, TPR_15, Tetratricopeptide repeat.
Length = 279
Score = 31.9 bits (73), Expect = 1.6
Identities = 25/111 (22%), Positives = 37/111 (33%), Gaps = 13/111 (11%)
Query: 601 HLFKSNKALKIITKQIILIL------IIYRVLLKWWAQYIESTEDMDLAMKYYEEARDYL 654
L S KA ++I + R+ W +Y S + A+ Y A DY
Sbjct: 68 QLLASGKARPDDYDRLIYLYYDAEPKDAARLAELGWRRY-HSPRHLQSALYLYTRAGDYK 126
Query: 655 SMVRVLCFLQDFSRAAELANASGDTAAAYHLARQYENSGQFDEAIHFYSVA 705
+V +L + A A Y +GQ D A+ Y A
Sbjct: 127 RIVDLL------ASLTPEEAAEQSAGFLSARAEYYRQTGQPDAALRDYRRA 171
>gnl|CDD|219534 pfam07720, TPR_3, Tetratricopeptide repeat. This Pfam entry
includes tetratricopeptide-like repeats found in the
LcrH/SycD-like chaperones.
Length = 34
Score = 27.9 bits (63), Expect = 1.9
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 109 YHLARQYENSGQFDEAIHFYSVA 131
Y LA + G++ EA H YS+
Sbjct: 5 YSLAAVFYLKGKYQEARHLYSLL 27
Score = 27.9 bits (63), Expect = 1.9
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 683 YHLARQYENSGQFDEAIHFYSVA 705
Y LA + G++ EA H YS+
Sbjct: 5 YSLAAVFYLKGKYQEARHLYSLL 27
>gnl|CDD|182343 PRK10262, PRK10262, thioredoxin reductase; Provisional.
Length = 321
Score = 31.6 bits (71), Expect = 1.9
Identities = 28/92 (30%), Positives = 40/92 (43%), Gaps = 12/92 (13%)
Query: 967 LGTKVTGASKSGDNITVT---IENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIE 1023
L T T +GD + VT + + ++ E L L V +G P N + E +E
Sbjct: 202 LHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSP---NTAIFEGQLE 258
Query: 1024 KDEKGRVPVNSRF-----QTVIPNIFAIGDCI 1050
E G + V S QT IP +FA GD +
Sbjct: 259 L-ENGYIKVQSGIHGNATQTSIPGVFAAGDVM 289
>gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat.
Length = 65
Score = 28.8 bits (65), Expect = 2.2
Identities = 13/64 (20%), Positives = 15/64 (23%), Gaps = 12/64 (18%)
Query: 73 YEEARDYLSMVRVLCFLQDFSRAAE-----LANASGDTAAAYHLARQYENSGQFDEAIHF 127
AR L D+ A LA A L G+ EA
Sbjct: 1 LALARAALR-------AGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAAL 53
Query: 128 YSVA 131
A
Sbjct: 54 LRAA 57
Score = 28.8 bits (65), Expect = 2.2
Identities = 13/64 (20%), Positives = 15/64 (23%), Gaps = 12/64 (18%)
Query: 647 YEEARDYLSMVRVLCFLQDFSRAAE-----LANASGDTAAAYHLARQYENSGQFDEAIHF 701
AR L D+ A LA A L G+ EA
Sbjct: 1 LALARAALR-------AGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAAL 53
Query: 702 YSVA 705
A
Sbjct: 54 LRAA 57
>gnl|CDD|235967 PRK07208, PRK07208, hypothetical protein; Provisional.
Length = 479
Score = 31.8 bits (73), Expect = 2.3
Identities = 10/49 (20%), Positives = 17/49 (34%)
Query: 955 QRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALL 1003
L G + L KV G GD + +E ++ D ++
Sbjct: 225 AEKLEALGGKVVLNAKVVGLHHDGDGRIAVVVVNDTDGTEETVTADQVI 273
>gnl|CDD|227946 COG5659, COG5659, FOG: Transposase [DNA replication, recombination,
and repair].
Length = 385
Score = 31.7 bits (72), Expect = 2.4
Identities = 14/66 (21%), Positives = 25/66 (37%), Gaps = 9/66 (13%)
Query: 364 EKIAEVDKY--------LEMKRNQSFRSSNTDIILPVEKWTLLSLARVLEGIEYKVGKFP 415
++ A + +Y R T ++LP ++ +L AR L G++
Sbjct: 7 KRSARLLEYFLILAMLLGHADRYAGLELYCTGLMLPKKRKSLEPWARAL-GLKNHQSLHV 65
Query: 416 FAANSR 421
F SR
Sbjct: 66 FVGRSR 71
>gnl|CDD|239144 cd02681, MIT_calpain7_1, MIT: domain contained within Microtubule
Interacting and Trafficking molecules. This sub-family
of MIT domains is found in the nuclear thiol protease
PalBH. The molecular function of the MIT domain is
unclear.
Length = 76
Score = 29.1 bits (65), Expect = 2.4
Identities = 17/78 (21%), Positives = 27/78 (34%), Gaps = 10/78 (12%)
Query: 678 DTAAAYHLARQYENSGQFDEAIHFYSVAGSCGNAVRLCGQLDAVESIASELNVQSDQDLI 737
D LA Q + G++ EA+ +Y A + A LN + +
Sbjct: 5 DAVQFARLAVQRDQEGRYSEAVFYYKEAAQLLIYAEM----------AGTLNDSHLKTIQ 54
Query: 738 LKCASYFARREHHDRAVQ 755
K Y R + + VQ
Sbjct: 55 EKSNEYLDRAQALHQLVQ 72
>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains
34 amino acids
[WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-
X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found
in a variety of organisms including bacteria,
cyanobacteria, yeast, fungi, plants, and humans in
various subcellular locations; involved in a variety of
functions including protein-protein interactions, but
common features in the interaction partners have not
been defined; involved in chaperone, cell-cycle,
transciption, and protein transport complexes; the
number of TPR motifs varies among proteins (1,3-11,13
15,16,19); 5-6 tandem repeats generate a right-handed
helical structure with an amphipathic channel that is
thought to accomodate an alpha-helix of a target
protein; it has been proposed that TPR proteins
preferably interact with WD-40 repeat proteins, but in
many instances several TPR-proteins seem to aggregate to
multi-protein complexes; examples of TPR-proteins
include, Cdc16p, Cdc23p and Cdc27p components of the
cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal
targeting signals, the Tom70p co-receptor for
mitochondrial targeting signals, Ser/Thr phosphatase 5C
and the p110 subunit of O-GlcNAc transferase; three
copies of the repeat are present here.
Length = 100
Score = 29.3 bits (66), Expect = 2.7
Identities = 20/80 (25%), Positives = 34/80 (42%), Gaps = 17/80 (21%)
Query: 64 EDMDLAMKYYEEARDYLSMVRVLCF---------------LQDFSRAAELANASGDTAAA 108
D D A++YYE+A + + L+D+ +A EL + A
Sbjct: 14 GDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAK--AY 71
Query: 109 YHLARQYENSGQFDEAIHFY 128
Y+L Y G+++EA+ Y
Sbjct: 72 YNLGLAYYKLGKYEEALEAY 91
Score = 29.3 bits (66), Expect = 2.7
Identities = 20/80 (25%), Positives = 34/80 (42%), Gaps = 17/80 (21%)
Query: 638 EDMDLAMKYYEEARDYLSMVRVLCF---------------LQDFSRAAELANASGDTAAA 682
D D A++YYE+A + + L+D+ +A EL + A
Sbjct: 14 GDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAK--AY 71
Query: 683 YHLARQYENSGQFDEAIHFY 702
Y+L Y G+++EA+ Y
Sbjct: 72 YNLGLAYYKLGKYEEALEAY 91
>gnl|CDD|225638 COG3096, MukB, Uncharacterized protein involved in chromosome
partitioning [Cell division and chromosome
partitioning].
Length = 1480
Score = 31.4 bits (71), Expect = 3.2
Identities = 28/93 (30%), Positives = 38/93 (40%), Gaps = 23/93 (24%)
Query: 731 QSDQDL----ILKCASYFA---------RREHHDRAVQMYAIARRYDQALSLIQTKHVPL 777
QSD+DL I + +Y A RR H D+A++ Q L+ Q +HV +
Sbjct: 253 QSDRDLFKHLISEATNYVAADYMRHANERRVHLDQALEFRRELYTSRQQLAAEQYRHVDM 312
Query: 778 SEELADLLVPPESD---------DQRQVVLNTL 801
S ELA L E D D +V L
Sbjct: 313 SRELA-ELNGAEGDLEADYQAASDHLNLVQTAL 344
>gnl|CDD|237200 PRK12778, PRK12778, putative bifunctional 2-polyprenylphenol
hydroxylase/glutamate synthase subunit beta; Provisional.
Length = 752
Score = 30.9 bits (70), Expect = 4.1
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 991 PTKKEELSCDALLVCVGRRPYTHNLGLEEI-GIEKDEKGRVPVNSRFQTVIPNIFAIGDC 1049
P + D ++V VG P + L I G+E + KG + V+ Q+ IP I+A GD
Sbjct: 667 PGSTFTVDVDLVIVSVGVSP--NPLVPSSIPGLELNRKGTIVVDEEMQSSIPGIYAGGDI 724
Query: 1050 IHG 1052
+ G
Sbjct: 725 VRG 727
>gnl|CDD|227202 COG4865, COG4865, Glutamate mutase epsilon subunit [Amino acid
transport and metabolism].
Length = 485
Score = 30.6 bits (69), Expect = 5.1
Identities = 27/127 (21%), Positives = 52/127 (40%), Gaps = 12/127 (9%)
Query: 799 NTLGNCAAVQANYHLATKLFTQAGDKGVKLN--LETMMG------TKSAAVKALTGGIAH 850
N + AA+QA LA + G +L+ MG +K+ A+ + +A
Sbjct: 257 NLTQDVAAIQALRELAHEYLQSYGYTDYELSTVFHQWMGGFPEDESKAFAIISWGAAVAG 316
Query: 851 LFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGIEVDEETI 910
+ + KV + H P I+ +T ++ + + ++ P P +E++ E I
Sbjct: 317 MSGATKVITKSPHEAWGIPTAAANIQGLKATRQM----LNMVNEQKIPPCPAVELEIELI 372
Query: 911 VSSTGAL 917
S A+
Sbjct: 373 KSEVRAV 379
>gnl|CDD|153289 cd07605, I-BAR_IMD, Inverse (I)-BAR, also known as the IRSp53/MIM
homology Domain (IMD), a dimerization module that binds
and bends membranes. Inverse (I)-BAR (or IMD) is a
member of the Bin/Amphiphysin/Rvs (BAR) domain family.
It is a dimerization and lipid-binding module that bends
membranes and induces membrane protrusions in the
opposite direction compared to classical BAR and F-BAR
domains, which produce membrane invaginations. IMD
domains are found in Insulin Receptor tyrosine kinase
Substrate p53 (IRSp53), Missing in Metastasis (MIM), and
Brain-specific Angiogenesis Inhibitor 1-Associated
Protein 2-like (BAIAP2L) proteins. These are
multi-domain proteins that act as scaffolding proteins
and transducers of a variety of signaling pathways that
link membrane dynamics and the underlying actin
cytoskeleton. Most members contain an N-terminal IMD, an
SH3 domain, and a WASP homology 2 (WH2) actin-binding
motif at the C-terminus, exccept for MIM which does not
carry an SH3 domain. Some members contain additional
domains and motifs. The IMD domain binds and bundles
actin filaments, binds membranes and produces membrane
protrusions, and interacts with the small GTPase Rac.
Length = 223
Score = 30.0 bits (68), Expect = 5.5
Identities = 18/72 (25%), Positives = 36/72 (50%), Gaps = 8/72 (11%)
Query: 331 GNYEKGLGALNEAKR----CLLKHNDSMYETLKS----SVVEKIAEVDKYLEMKRNQSFR 382
Y+K L AL++A + L K + ++ S +++I + K +E Q +
Sbjct: 30 KKYQKALQALSQAAKVFFDALAKIGELASQSRGSQELGEALKQIVDTHKSIEASLEQVAK 89
Query: 383 SSNTDIILPVEK 394
+ + ++ILP+EK
Sbjct: 90 AFHGELILPLEK 101
>gnl|CDD|226856 COG4448, AnsA, L-asparaginase II [Amino acid transport and
metabolism].
Length = 339
Score = 30.2 bits (68), Expect = 5.8
Identities = 17/50 (34%), Positives = 23/50 (46%)
Query: 718 LDAVESIASELNVQSDQDLILKCASYFARREHHDRAVQMYAIARRYDQAL 767
L VE+ A++ D+DL L C+S+ EH A M A AL
Sbjct: 62 LPLVETGAADAYGFGDRDLALACSSHSGEIEHVRLAANMLWRAGLDPSAL 111
>gnl|CDD|216400 pfam01266, DAO, FAD dependent oxidoreductase. This family includes
various FAD dependent oxidoreductases:
Glycerol-3-phosphate dehydrogenase EC:1.1.99.5, Sarcosine
oxidase beta subunit EC:1.5.3.1, D-alanine oxidase
EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1.
Length = 234
Score = 30.0 bits (68), Expect = 5.8
Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 7/46 (15%)
Query: 960 KQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVC 1005
G++ GT+VTG + G +TV T+ E+ D ++
Sbjct: 159 ALGVEILEGTEVTGLEREGGGVTVE-------TEDGEIRADKVVNA 197
>gnl|CDD|226087 COG3557, COG3557, Uncharacterized domain/protein associated with
RNAses G and E [Translation, ribosomal structure and
biogenesis].
Length = 177
Score = 29.3 bits (66), Expect = 6.6
Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 20/79 (25%)
Query: 3 EEETMKNGDIDRAIRMFEKAETH-------QQH---------VPRMLLENTDKLEKYIIQ 46
+EE +K D D I++F E ++H + R+L EN D L +I +
Sbjct: 95 DEEALKYIDYDLDIKVFPDGEKKLLDVDEYEEHRKKMHYPPDIDRILKENVDILVDWIEE 154
Query: 47 SKDPV----LLKWWAQYIE 61
K P + W+ +Y +
Sbjct: 155 YKGPFSPDFIDIWYERYDK 173
>gnl|CDD|237942 PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F;
Provisional.
Length = 517
Score = 30.1 bits (69), Expect = 6.7
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 1022 IEKDEKGRVPVNSRFQTVIPNIFAIGDC 1049
+E + +G + V++R T +P +FA GDC
Sbjct: 458 VELNRRGEIIVDARGATSVPGVFAAGDC 485
>gnl|CDD|216176 pfam00890, FAD_binding_2, FAD binding domain. This family includes
members that bind FAD. This family includes the
flavoprotein subunits from succinate and fumarate
dehydrogenase, aspartate oxidase and the alpha subunit of
adenylylsulphate reductase.
Length = 401
Score = 30.0 bits (68), Expect = 7.5
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 1021 GIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGPM 1054
G+ DE GRV IP ++A G+ G +
Sbjct: 359 GVRTDENGRVLDAD--GQPIPGLYAAGEVACGGV 390
>gnl|CDD|220821 pfam10602, RPN7, 26S proteasome subunit RPN7. RPN7 (known as the
non ATPase regulatory subunit 6 in higher eukaryotes)
is one of the lid subunits of the 26S proteasome and
has been shown in Saccharomyces cerevisiae to be
required for structural integrity. The 26S proteasome
is is involved in the ATP-dependent degradation of
ubiquitinated proteins.
Length = 174
Score = 29.1 bits (66), Expect = 8.2
Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 11/48 (22%)
Query: 57 AQYIESTEDMDLAMKYYEEARDY-----------LSMVRVLCFLQDFS 93
A++ D++ A+K Y AR+Y L+++RV F D+
Sbjct: 43 AEHYAKIGDLENALKAYSRAREYCTSLGHKIDMCLNLIRVGIFFNDWD 90
Score = 29.1 bits (66), Expect = 8.2
Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 11/48 (22%)
Query: 631 AQYIESTEDMDLAMKYYEEARDY-----------LSMVRVLCFLQDFS 667
A++ D++ A+K Y AR+Y L+++RV F D+
Sbjct: 43 AEHYAKIGDLENALKAYSRAREYCTSLGHKIDMCLNLIRVGIFFNDWD 90
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.133 0.381
Gapped
Lambda K H
0.267 0.0733 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 53,785,024
Number of extensions: 5374928
Number of successful extensions: 5317
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5170
Number of HSP's successfully gapped: 218
Length of query: 1074
Length of database: 10,937,602
Length adjustment: 107
Effective length of query: 967
Effective length of database: 6,191,724
Effective search space: 5987397108
Effective search space used: 5987397108
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (28.4 bits)