RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14927
(1074 letters)
>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate
dehydrogenase, alpha- ketoglutarate dehydrogenase; HET:
FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A*
1zy8_A* 3rnm_A*
Length = 474
Score = 398 bits (1024), Expect = e-128
Identities = 174/269 (64%), Positives = 205/269 (76%), Gaps = 19/269 (7%)
Query: 824 KGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEE 883
V+LNL+ MM KS AVKALTGGIAHLFK NKV +NG+GKITG N VT K+DG T+
Sbjct: 79 SEVRLNLDKMMEQKSTAVKALTGGIAHLFKQNKVVHVNGYGKITGKNQVTATKADGGTQV 138
Query: 884 VKTKNILIATGSEVTPFPGIEVDEETIVSSTGALSLKK-----------------GSVWG 926
+ TKNILIATGSEVTPFPGI +DE+TIVSSTGALSLKK GSVW
Sbjct: 139 IDTKNILIATGSEVTPFPGITIDEDTIVSSTGALSLKKVPEKMVVIGAGVIGVELGSVWQ 198
Query: 927 RLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGD-NITVTI 985
RLGA+VTA+EF+ +GG+GID E++K FQRIL KQG +FKL TKVTGA+K D I V+I
Sbjct: 199 RLGADVTAVEFLGHVGGVGIDMEISKNFQRILQKQGFKFKLNTKVTGATKKSDGKIDVSI 258
Query: 986 ENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFA 1045
E K E ++CD LLVC+GRRP+T NLGLEE+GIE D +GR+PVN+RFQT IPNI+A
Sbjct: 259 EAASGG-KAEVITCDVLLVCIGRRPFTKNLGLEELGIELDPRGRIPVNTRFQTKIPNIYA 317
Query: 1046 IGDCIHGPMLAHKAEDEGIVCVEGIAGDK 1074
IGD + GPMLAHKAEDEGI+CVEG+AG
Sbjct: 318 IGDVVAGPMLAHKAEDEGIICVEGMAGGA 346
Score = 173 bits (441), Expect = 1e-46
Identities = 62/78 (79%), Positives = 70/78 (89%)
Query: 452 GIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAME 511
GIEYKVGKFPFAANSRAKTN DTDG VK+LG K TD+VLG HI+GP AGE++NEA LA+E
Sbjct: 378 GIEYKVGKFPFAANSRAKTNADTDGMVKILGQKSTDRVLGAHILGPGAGEMVNEAALALE 437
Query: 512 YGASCEDVARTCHAHPTV 529
YGASCED+AR CHAHPT+
Sbjct: 438 YGASCEDIARVCHAHPTL 455
Score = 149 bits (380), Expect = 1e-38
Identities = 63/80 (78%), Positives = 69/80 (86%)
Query: 528 TVCVEKNDTLGGTCLNVGCIPSKALLNNSHYYHMAHSGDMKARGIEVEGVKLNLETMMGT 587
TVC+EKN+TLGGTCLNVGCIPSKALLNNSHYYHMAH D +RGIE+ V+LNL+ MM
Sbjct: 32 TVCIEKNETLGGTCLNVGCIPSKALLNNSHYYHMAHGTDFASRGIEMSEVRLNLDKMMEQ 91
Query: 588 KSAAVKALTGGIAHLFKSNK 607
KS AVKALTGGIAHLFK NK
Sbjct: 92 KSTAVKALTGGIAHLFKQNK 111
>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex
protein, pyruvate dehydrogenase complex, glycine
decarboxylase complex; HET: FAD; 3.15A {Pisum sativum}
SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 470
Score = 396 bits (1020), Expect = e-127
Identities = 130/284 (45%), Positives = 174/284 (61%), Gaps = 21/284 (7%)
Query: 810 NYHLATKLFTQAG--DKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKIT 867
YH A F G V+++L MMG K AV LT GI LFK NKVT + G+GK
Sbjct: 62 MYHEAKHSFANHGVKVSNVEIDLAAMMGQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFV 121
Query: 868 GPNTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGIEVDEETIVSSTGALSLKK------ 921
P+ ++V +G VK K+I+IATGS+V PG+ +DE+ IVSSTGAL+L +
Sbjct: 122 SPSEISVDTIEGENTVVKGKHIIIATGSDVKSLPGVTIDEKKIVSSTGALALSEIPKKLV 181
Query: 922 -----------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTK 970
GSVWGR+G+EVT +EF + I +D E+ KQFQR L KQGM+FKL TK
Sbjct: 182 VIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVP-TMDAEIRKQFQRSLEKQGMKFKLKTK 240
Query: 971 VTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRV 1030
V G SGD + +T+E ++ + D +LV GR P+T L L++IG+E D+ GR+
Sbjct: 241 VVGVDTSGDGVKLTVEPSAGG-EQTIIEADVVLVSAGRTPFTSGLNLDKIGVETDKLGRI 299
Query: 1031 PVNSRFQTVIPNIFAIGDCIHGPMLAHKAEDEGIVCVEGIAGDK 1074
VN RF T + ++AIGD I GPMLAHKAE++G+ CVE +AG
Sbjct: 300 LVNERFSTNVSGVYAIGDVIPGPMLAHKAEEDGVACVEYLAGKV 343
Score = 170 bits (434), Expect = 1e-45
Identities = 49/78 (62%), Positives = 65/78 (83%)
Query: 452 GIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAME 511
G+EY+VGKFPF ANSRAK ++ +G VK++ +K TDK+LGVHI+ P AGELI+EA +A++
Sbjct: 375 GVEYRVGKFPFMANSRAKAIDNAEGLVKIIAEKETDKILGVHIMAPNAGELIHEAAIALQ 434
Query: 512 YGASCEDVARTCHAHPTV 529
Y AS ED+AR CHAHPT+
Sbjct: 435 YDASSEDIARVCHAHPTM 452
Score = 140 bits (355), Expect = 2e-35
Identities = 45/80 (56%), Positives = 53/80 (66%), Gaps = 1/80 (1%)
Query: 528 TVCVEKNDTLGGTCLNVGCIPSKALLNNSHYYHMAHSGDMKARGIEVEGVKLNLETMMGT 587
T C+EK LGGTCLNVGCIPSKALL++SH YH A G++V V+++L MMG
Sbjct: 32 TTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAKH-SFANHGVKVSNVEIDLAAMMGQ 90
Query: 588 KSAAVKALTGGIAHLFKSNK 607
K AV LT GI LFK NK
Sbjct: 91 KDKAVSNLTRGIEGLFKKNK 110
>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A
{Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
PDB: 1lpf_A*
Length = 476
Score = 393 bits (1013), Expect = e-126
Identities = 109/284 (38%), Positives = 160/284 (56%), Gaps = 23/284 (8%)
Query: 810 NYHLATKLFTQAG--DKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKIT 867
+H A + F G V +++ TM+ K V+ LTGG+A L K+N VT GHGK+
Sbjct: 65 KFHEAHESFKLHGISTGEVAIDVPTMIARKDQIVRNLTGGVASLIKANGVTLFEGHGKLL 124
Query: 868 GPNTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGIEVDEETIVSSTGALSLKK------ 921
V V +DGS++ + T+N+++A+GS+ P VD++ IV STGAL +
Sbjct: 125 AGKKVEVTAADGSSQVLDTENVILASGSKPVEIPPAPVDQDVIVDSTGALDFQNVPGKLG 184
Query: 922 -----------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTK 970
GSVW RLGAEVT +E M+ +D +VAK+ Q+IL KQG++ LG +
Sbjct: 185 VIGAGVIGLELGSVWARLGAEVTVLEAMDKFLP-AVDEQVAKEAQKILTKQGLKILLGAR 243
Query: 971 VTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRV 1030
VTG +TV + + ++ + D L+V VGRRP T +L + G+ DE+G +
Sbjct: 244 VTGTEVKNKQVTVKFVDAE---GEKSQAFDKLIVAVGRRPVTTDLLAADSGVTLDERGFI 300
Query: 1031 PVNSRFQTVIPNIFAIGDCIHGPMLAHKAEDEGIVCVEGIAGDK 1074
V+ T +P ++AIGD + G MLAHKA +EG+V E IAG K
Sbjct: 301 YVDDYCATSVPGVYAIGDVVRGAMLAHKASEEGVVVAERIAGHK 344
Score = 173 bits (440), Expect = 2e-46
Identities = 42/78 (53%), Positives = 54/78 (69%)
Query: 452 GIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAME 511
G+ VG FPFAA+ RA NDT GFVKV+ D TD+VLGVH+IGP+A EL+ + +AME
Sbjct: 376 GVAINVGVFPFAASGRAMAANDTAGFVKVIADAKTDRVLGVHVIGPSAAELVQQGAIAME 435
Query: 512 YGASCEDVARTCHAHPTV 529
+G S ED+ AHP +
Sbjct: 436 FGTSAEDLGMMVFAHPAL 453
Score = 136 bits (345), Expect = 5e-34
Identities = 40/86 (46%), Positives = 52/86 (60%), Gaps = 7/86 (8%)
Query: 528 TVCVEK------NDTLGGTCLNVGCIPSKALLNNSHYYHMAHSGDMKARGIEVEGVKLNL 581
T +EK LGGTCLNVGCIPSKALL++S+ +H AH K GI V +++
Sbjct: 29 TALIEKYKGKEGKTALGGTCLNVGCIPSKALLDSSYKFHEAHE-SFKLHGISTGEVAIDV 87
Query: 582 ETMMGTKSAAVKALTGGIAHLFKSNK 607
TM+ K V+ LTGG+A L K+N
Sbjct: 88 PTMIARKDQIVRNLTGGVASLIKANG 113
>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics,
protein structure initiati YORK structural genomics
research consortium; HET: FAD; 1.90A {Sinorhizobium
meliloti}
Length = 491
Score = 391 bits (1007), Expect = e-125
Identities = 135/286 (47%), Positives = 174/286 (60%), Gaps = 23/286 (8%)
Query: 810 NYHLATKLFTQAG--DKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKIT 867
+H A G KLNL+ MM K A VK+ G++ LFK NK+ G GK+
Sbjct: 81 MFHQAQHGLEALGVEVANPKLNLQKMMAHKDATVKSNVDGVSFLFKKNKIDGFQGTGKVL 140
Query: 868 GPNTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGIEV--DEETIVSSTGALSLKK---- 921
G V+V G + ++ KN++IATGS+V PG+EV DE+TIVSSTGAL+L+K
Sbjct: 141 GQGKVSVTNEKGEEQVLEAKNVVIATGSDVAGIPGVEVAFDEKTIVSSTGALALEKVPAS 200
Query: 922 -------------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLG 968
GSVW RLGA+VT +EF++ I G G+DGEVAKQ QR+L KQG+ FKLG
Sbjct: 201 MIVVGGGVIGLELGSVWARLGAKVTVVEFLDTILG-GMDGEVAKQLQRMLTKQGIDFKLG 259
Query: 969 TKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKG 1028
KVTGA KSGD VT E VK + L + +L+ GR+P T LGL + G+ D +G
Sbjct: 260 AKVTGAVKSGDGAKVTFEPVKGG-EATTLDAEVVLIATGRKPSTDGLGLAKAGVVLDSRG 318
Query: 1029 RVPVNSRFQTVIPNIFAIGDCIHGPMLAHKAEDEGIVCVEGIAGDK 1074
RV ++ FQT I ++AIGD + GPMLAHKAEDEG+ E IAG
Sbjct: 319 RVEIDRHFQTSIAGVYAIGDVVRGPMLAHKAEDEGVAVAEIIAGQA 364
Score = 172 bits (439), Expect = 4e-46
Identities = 49/78 (62%), Positives = 60/78 (76%)
Query: 452 GIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAME 511
G+ YK+GKFPF AN RA+ TDGFVK+L DK TD+VLG HIIG AGE+I+E + ME
Sbjct: 396 GVAYKIGKFPFTANGRARAMLQTDGFVKILADKETDRVLGGHIIGFGAGEMIHEIAVLME 455
Query: 512 YGASCEDVARTCHAHPTV 529
+G S ED+ RTCHAHPT+
Sbjct: 456 FGGSSEDLGRTCHAHPTM 473
Score = 141 bits (358), Expect = 1e-35
Identities = 43/80 (53%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
Query: 528 TVCVEKNDTLGGTCLNVGCIPSKALLNNSHYYHMAHSGDMKARGIEVEGVKLNLETMMGT 587
VEK T GGTCLNVGCIPSKALL+ S +H A ++A G+EV KLNL+ MM
Sbjct: 51 VAVVEKRSTYGGTCLNVGCIPSKALLHASEMFHQAQH-GLEALGVEVANPKLNLQKMMAH 109
Query: 588 KSAAVKALTGGIAHLFKSNK 607
K A VK+ G++ LFK NK
Sbjct: 110 KDATVKSNVDGVSFLFKKNK 129
>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase,
homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}
Length = 468
Score = 387 bits (997), Expect = e-124
Identities = 119/287 (41%), Positives = 167/287 (58%), Gaps = 25/287 (8%)
Query: 810 NYHLATKLFTQAG---DKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKI 866
YH A F + G +GV ++ M K AVK LTGG+ +LFK NKVT G G
Sbjct: 58 LYHDAHANFARYGLMGGEGVTMDSAKMQQQKERAVKGLTGGVEYLFKKNKVTYYKGEGSF 117
Query: 867 TGPNTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGIEVDEETIVSSTGALSLKK----- 921
+++ V DG E ++TK +IATGSE T P + DE+ ++SSTGAL+L +
Sbjct: 118 ETAHSIRVNGLDGKQEMLETKKTIIATGSEPTELPFLPFDEKVVLSSTGALALPRVPKTM 177
Query: 922 ------------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGK-QGMQFKLG 968
GSVW RLGAEVT +EF +D +V L K + M+F
Sbjct: 178 VVIGGGVIGLELGSVWARLGAEVTVVEFAPRCAP-TLDEDVTNALVGALAKNEKMKFMTS 236
Query: 969 TKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKG 1028
TKV G + +GD++++ +E K+E ++C+ALLV VGRRP+T LGL++I + K+E+G
Sbjct: 237 TKVVGGTNNGDSVSLEVEGKNG--KRETVTCEALLVSVGRRPFTGGLGLDKINVAKNERG 294
Query: 1029 RVPVNSRFQTVIPNIFAIGDCI-HGPMLAHKAEDEGIVCVEGIAGDK 1074
V + F+T IP+++AIGD + GPMLAHKAEDEG+ C E +AG
Sbjct: 295 FVKIGDHFETSIPDVYAIGDVVDKGPMLAHKAEDEGVACAEILAGKP 341
Score = 171 bits (437), Expect = 4e-46
Identities = 57/78 (73%), Positives = 63/78 (80%)
Query: 452 GIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAME 511
G+ YKVGKFPF ANSRAK + DGFVKVL DK TD++LGVHI+ AGELI EA LAME
Sbjct: 373 GVAYKVGKFPFNANSRAKAVSTEDGFVKVLVDKATDRILGVHIVCTTAGELIGEACLAME 432
Query: 512 YGASCEDVARTCHAHPTV 529
YGAS EDV RTCHAHPT+
Sbjct: 433 YGASSEDVGRTCHAHPTM 450
Score = 139 bits (352), Expect = 5e-35
Identities = 45/81 (55%), Positives = 54/81 (66%), Gaps = 2/81 (2%)
Query: 528 TVCVEKNDTLGGTCLNVGCIPSKALLNNSHYYHMAHSGDMKARGIEV-EGVKLNLETMMG 586
T CVEK LGGTCLNVGCIPSKALL+ +H YH AH+ + G+ EGV ++ M
Sbjct: 28 TACVEKRGALGGTCLNVGCIPSKALLHATHLYHDAHA-NFARYGLMGGEGVTMDSAKMQQ 86
Query: 587 TKSAAVKALTGGIAHLFKSNK 607
K AVK LTGG+ +LFK NK
Sbjct: 87 QKERAVKGLTGGVEYLFKKNK 107
>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex,
pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A
{Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
PDB: 1jeh_A*
Length = 478
Score = 384 bits (989), Expect = e-123
Identities = 129/292 (44%), Positives = 166/292 (56%), Gaps = 28/292 (9%)
Query: 810 NYHLATKLFTQAG---DKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKI 866
+H + G + +K+N+ K AVK LTGGI LFK NKVT G+G
Sbjct: 61 LFHQMHTEAQKRGIDVNGDIKINVANFQKAKDDAVKQLTGGIELLFKKNKVTYYKGNGSF 120
Query: 867 TGPNTVTVIKSDGS------TEEVKTKNILIATGSEVTPFPGIEVDEETIVSSTGALSLK 920
+ V DG + KNI++ATGSEVTPFPGIE+DEE IVSSTGALSLK
Sbjct: 121 EDETKIRVTPVDGLEGTVKEDHILDVKNIIVATGSEVTPFPGIEIDEEKIVSSTGALSLK 180
Query: 921 K-----------------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGM 963
+ GSV+ RLG++VT +EF IG +DGEVAK Q+ L KQG+
Sbjct: 181 EIPKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGA-SMDGEVAKATQKFLKKQGL 239
Query: 964 QFKLGTKVTGASKSGDNITVTIENVKDPT-KKEELSCDALLVCVGRRPYTHNLGLEEIGI 1022
FKL TKV A ++ D V I T K+E L + LLV VGRRPY LG E+IG+
Sbjct: 240 DFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVAVGRRPYIAGLGAEKIGL 299
Query: 1023 EKDEKGRVPVNSRFQTVIPNIFAIGDCIHGPMLAHKAEDEGIVCVEGIAGDK 1074
E D++GR+ ++ +F + P+I +GD GPMLAHKAE+EGI VE +
Sbjct: 300 EVDKRGRLVIDDQFNSKFPHIKVVGDVTFGPMLAHKAEEEGIAAVEMLKTGH 351
Score = 173 bits (440), Expect = 2e-46
Identities = 58/78 (74%), Positives = 68/78 (87%)
Query: 452 GIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAME 511
GI+YK+GKFPFAANSRAKTN DT+GFVK+L D T+++LG HIIGP AGE+I EA LA+E
Sbjct: 383 GIDYKIGKFPFAANSRAKTNQDTEGFVKILIDSKTERILGAHIIGPNAGEMIAEAGLALE 442
Query: 512 YGASCEDVARTCHAHPTV 529
YGAS EDVAR CHAHPT+
Sbjct: 443 YGASAEDVARVCHAHPTL 460
Score = 139 bits (354), Expect = 3e-35
Identities = 49/81 (60%), Positives = 57/81 (70%), Gaps = 2/81 (2%)
Query: 528 TVCVEKNDTLGGTCLNVGCIPSKALLNNSHYYHMAHSGDMKARGIEVEG-VKLNLETMMG 586
T CVEK LGGTCLNVGCIPSKALLNNSH +H H+ + + RGI+V G +K+N+
Sbjct: 31 TACVEKRGKLGGTCLNVGCIPSKALLNNSHLFHQMHT-EAQKRGIDVNGDIKINVANFQK 89
Query: 587 TKSAAVKALTGGIAHLFKSNK 607
K AVK LTGGI LFK NK
Sbjct: 90 AKDDAVKQLTGGIELLFKKNK 110
>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase,
2-oxoglutarate dehydrogenase comple pyruvate
dehydrogenase complex; HET: FAD; 1.70A {Thermus
thermophilus} PDB: 2eq7_A*
Length = 455
Score = 382 bits (984), Expect = e-122
Identities = 106/282 (37%), Positives = 148/282 (52%), Gaps = 27/282 (9%)
Query: 810 NYHLATKLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGP 869
+ A K A KGV+L+L +M K V+A T G+ LFK N + + G +
Sbjct: 57 RIYEAKKGLLGAKVKGVELDLPALMAHKDKVVQANTQGVEFLFKKNGIARHQGTARFLSE 116
Query: 870 NTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGIEVDEETIVSSTGALSLKK-------- 921
V V + + EE++ + ILIATGS P +VD E +V+ST ALS +
Sbjct: 117 RKVLV---EETGEELEARYILIATGSAPLIPPWAQVDYERVVTSTEALSFPEVPKRLIVV 173
Query: 922 ---------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVT 972
G VW RLGAEV +E+M+ I +D EV++ +R+ KQG+ + G +VT
Sbjct: 174 GGGVIGLELGVVWHRLGAEVIVLEYMDRILP-TMDLEVSRAAERVFKKQGLTIRTGVRVT 232
Query: 973 GASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPV 1032
V +E E L D +LV VGRRPYT L LE G+ DE+GR+PV
Sbjct: 233 AVVPEAKGARVELEG------GEVLEADRVLVAVGRRPYTEGLSLENAGLSTDERGRIPV 286
Query: 1033 NSRFQTVIPNIFAIGDCIHGPMLAHKAEDEGIVCVEGIAGDK 1074
+ +T +P+I+AIGD + GPMLAHKA +EGI VE +
Sbjct: 287 DEHLRTRVPHIYAIGDVVRGPMLAHKASEEGIAAVEHMVRGF 328
Score = 171 bits (436), Expect = 4e-46
Identities = 40/78 (51%), Positives = 57/78 (73%)
Query: 452 GIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAME 511
GI YKVGKFP++A+ RA+ +T+GF+KVL TD++LGVH IG G+++ EA LA+
Sbjct: 360 GIPYKVGKFPYSASGRARAMGETEGFIKVLAHAKTDRILGVHGIGARVGDVLAEAALALF 419
Query: 512 YGASCEDVARTCHAHPTV 529
+ AS ED+ R HAHP++
Sbjct: 420 FKASAEDLGRAPHAHPSL 437
Score = 140 bits (356), Expect = 1e-35
Identities = 37/80 (46%), Positives = 47/80 (58%), Gaps = 3/80 (3%)
Query: 528 TVCVEKNDTLGGTCLNVGCIPSKALLNNSHYYHMAHSGDMKARGIEVEGVKLNLETMMGT 587
VEK LGGTCL VGCIPSKALL + + A G + G +V+GV+L+L +M
Sbjct: 27 VGVVEKEKALGGTCLRVGCIPSKALLETTERIYEAKKGLL---GAKVKGVELDLPALMAH 83
Query: 588 KSAAVKALTGGIAHLFKSNK 607
K V+A T G+ LFK N
Sbjct: 84 KDKVVQANTQGVEFLFKKNG 103
>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3
component; oxidoreductase, homodimer, structural
genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus}
PDB: 2eq8_A* 2eq9_A*
Length = 464
Score = 371 bits (955), Expect = e-118
Identities = 101/284 (35%), Positives = 146/284 (51%), Gaps = 28/284 (9%)
Query: 810 NYHLATKLFTQAGDKG-VKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITG 868
H K+ G K +L+L+ + G + VK LTGG+ L K N V L G ++ G
Sbjct: 61 TLHHL-KVAEGFGLKAKPELDLKKLGGWRDQVVKKLTGGVGTLLKGNGVELLRGFARLVG 119
Query: 869 PNTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGIEVDEETIVSSTGALSLKK------- 921
P V V E K++++ATGSE G E+ + ST AL +++
Sbjct: 120 PKEVEV-----GGERYGAKSLILATGSEPLELKGFPFGED-VWDSTRALKVEEGLPKRLL 173
Query: 922 -----------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTK 970
G V+ RLGAEVT IE+M I D E A +R L K+G++ + TK
Sbjct: 174 VIGGGAVGLELGQVYRRLGAEVTLIEYMPEILP-QGDPETAALLRRALEKEGIRVRTKTK 232
Query: 971 VTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRV 1030
G K D + V +E + + EE+ D +LV VGR+P T LGLE+ G++ DE+G +
Sbjct: 233 AVGYEKKKDGLHVRLEPAEGG-EGEEVVVDKVLVAVGRKPRTEGLGLEKAGVKVDERGFI 291
Query: 1031 PVNSRFQTVIPNIFAIGDCIHGPMLAHKAEDEGIVCVEGIAGDK 1074
VN+R +T +P ++AIGD P+LAHKA EG++ E AG
Sbjct: 292 RVNARMETSVPGVYAIGDAARPPLLAHKAMREGLIAAENAAGKD 335
Score = 170 bits (432), Expect = 2e-45
Identities = 45/77 (58%), Positives = 55/77 (71%)
Query: 452 GIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAME 511
G + KVGKFP AA+ RA T +G VKV+GD+ TD +LGV I+GP AGELI EA LA+E
Sbjct: 366 GYKVKVGKFPLAASGRALTLGGAEGMVKVVGDEETDLLLGVFIVGPQAGELIAEAALALE 425
Query: 512 YGASCEDVARTCHAHPT 528
GA+ D+A T H HPT
Sbjct: 426 MGATLTDLALTVHPHPT 442
Score = 130 bits (329), Expect = 4e-32
Identities = 30/80 (37%), Positives = 45/80 (56%), Gaps = 4/80 (5%)
Query: 528 TVCVEKNDTLGGTCLNVGCIPSKALLNNSHYYHMAHSGDMKARGIEVEGVKLNLETMMGT 587
+ VE +GG CLNVGCIP+KALL+ + H + G++ + +L+L+ + G
Sbjct: 32 VLAVEA-GEVGGVCLNVGCIPTKALLHAAETLHHLK--VAEGFGLKAK-PELDLKKLGGW 87
Query: 588 KSAAVKALTGGIAHLFKSNK 607
+ VK LTGG+ L K N
Sbjct: 88 RDQVVKKLTGGVGTLLKGNG 107
>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase,
NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria
meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*
Length = 482
Score = 372 bits (957), Expect = e-118
Identities = 87/278 (31%), Positives = 132/278 (47%), Gaps = 31/278 (11%)
Query: 824 KGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTV--------- 874
+L+++ + K V LTGG+A + KS KV + G G+ P+ + V
Sbjct: 77 PEPELDIDMLRAYKDGVVSRLTGGLAGMAKSRKVDVIQGDGQFLDPHHLEVSLTAGDAYE 136
Query: 875 -IKSDGSTEEVKTKNILIATGSEVTPFPGIEVDEETIVSSTGALSLKK------------ 921
G + V KN +IA GS VT P I D I+ S+GAL+LK+
Sbjct: 137 QAAPTGEKKIVAFKNCIIAAGSRVTKLPFIPEDPR-IIDSSGALALKEVPGKLLIIGGGI 195
Query: 922 -----GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASK 976
G+V+ LG+ + +E M+ + G D ++ K +Q+ + + TK
Sbjct: 196 IGLEMGTVYSTLGSRLDVVEMMDGLMQ-GADRDLVKVWQKQNEYRFDNIMVNTKTVAVEP 254
Query: 977 SGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRF 1036
D + VT E P KE DA+LV GR P + E+ G+ ++G + V+ +
Sbjct: 255 KEDGVYVTFEGANAP--KEPQRYDAVLVAAGRAPNGKLISAEKAGVAVTDRGFIEVDKQM 312
Query: 1037 QTVIPNIFAIGDCIHGPMLAHKAEDEGIVCVEGIAGDK 1074
+T +P+I+AIGD + PMLAHKA EG V E AG K
Sbjct: 313 RTNVPHIYAIGDIVGQPMLAHKAVHEGHVAAENCAGHK 350
Score = 170 bits (434), Expect = 1e-45
Identities = 28/77 (36%), Positives = 42/77 (54%)
Query: 452 GIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAME 511
+ FP+AA+ RA N F K++ D T +++G I+GP G++I E LA+E
Sbjct: 382 ARKITKANFPWAASGRAIANGCDKPFTKLIFDAETGRIIGGGIVGPNGGDMIGEVCLAIE 441
Query: 512 YGASCEDVARTCHAHPT 528
G D+ +T H HPT
Sbjct: 442 MGCDAADIGKTIHPHPT 458
Score = 140 bits (356), Expect = 2e-35
Identities = 34/80 (42%), Positives = 46/80 (57%), Gaps = 2/80 (2%)
Query: 528 TVCVEKNDTLGGTCLNVGCIPSKALLNNSHYYHMAHSGDMKARGIEVEGVKLNLETMMGT 587
VE+ TLGG CLNVGCIPSKALL+N+ + A GI+ +L+++ +
Sbjct: 32 VAIVERYKTLGGVCLNVGCIPSKALLHNAAVIDEVR--HLAANGIKYPEPELDIDMLRAY 89
Query: 588 KSAAVKALTGGIAHLFKSNK 607
K V LTGG+A + KS K
Sbjct: 90 KDGVVSRLTGGLAGMAKSRK 109
>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center,
glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus
stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 455
Score = 370 bits (952), Expect = e-118
Identities = 93/268 (34%), Positives = 135/268 (50%), Gaps = 23/268 (8%)
Query: 824 KGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEE 883
+ V ++ + K++ VK LTGG+ L K NKV + G NTV V+ D +
Sbjct: 73 ENVTIDFAKVQEWKASVVKKLTGGVEGLLKGNKVEIVKGEAYFVDANTVRVVNGDS-AQT 131
Query: 884 VKTKNILIATGSEVTPFPGIEVDEETIVSSTGALSLKK-----------------GSVWG 926
KN +IATGS P + I+ STGAL+L + G+ +
Sbjct: 132 YTFKNAIIATGSRPIELPNFKFSNR-ILDSTGALNLGEVPKSLVVIGGGYIGIELGTAYA 190
Query: 927 RLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIE 986
G +VT +E I G + ++A ++ L K+G++ GA + D +TVT E
Sbjct: 191 NFGTKVTILEGAGEILS-GFEKQMAAIIKKRLKKKGVEVVTNALAKGAEEREDGVTVTYE 249
Query: 987 NVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAI 1046
+ + + D +LV VGRRP T LGLE+IGI+ +G + V+ + +T +PNIFAI
Sbjct: 250 ANG---ETKTIDADYVLVTVGRRPNTDELGLEQIGIKMTNRGLIEVDQQCRTSVPNIFAI 306
Query: 1047 GDCIHGPMLAHKAEDEGIVCVEGIAGDK 1074
GD + GP LAHKA EG V E IAG
Sbjct: 307 GDIVPGPALAHKASYEGKVAAEAIAGHP 334
Score = 169 bits (432), Expect = 1e-45
Identities = 40/77 (51%), Positives = 51/77 (66%)
Query: 452 GIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAME 511
GI+ KFPFAAN RA NDTDGF+K++ K ++G IIGP A ++I E LA+E
Sbjct: 366 GIDVIAAKFPFAANGRALALNDTDGFLKLVVRKEDGVIIGAQIIGPNASDMIAELGLAIE 425
Query: 512 YGASCEDVARTCHAHPT 528
G + ED+A T HAHPT
Sbjct: 426 AGMTAEDIALTIHAHPT 442
Score = 136 bits (344), Expect = 4e-34
Identities = 37/80 (46%), Positives = 47/80 (58%), Gaps = 3/80 (3%)
Query: 528 TVCVEKNDTLGGTCLNVGCIPSKALLNNSHYYHMAHSGDMKARGIEVEGVKLNLETMMGT 587
VEK LGG CLNVGCIPSKAL++ SH Y A + GI+ E V ++ +
Sbjct: 29 VTIVEK-GNLGGVCLNVGCIPSKALISASHRYEQAK--HSEEMGIKAENVTIDFAKVQEW 85
Query: 588 KSAAVKALTGGIAHLFKSNK 607
K++ VK LTGG+ L K NK
Sbjct: 86 KASVVKKLTGGVEGLLKGNK 105
>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide
dehydrogenase, pyruvate dehydrogenase, alpha keto acid
dehydrogenase; HET: FAD; 2.40A {Mycobacterium
tuberculosis} PDB: 3ii4_A*
Length = 464
Score = 367 bits (944), Expect = e-116
Identities = 76/282 (26%), Positives = 124/282 (43%), Gaps = 23/282 (8%)
Query: 811 YHLATKLFTQAGDKG-VKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGP 869
H+ TK G G V + + G+ L K NK+T+++G+G
Sbjct: 59 VHIFTKDAKAFGISGEVTFDYGIAYDRSRKVAEGRVAGVHFLMKKNKITEIHGYGTFADA 118
Query: 870 NTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGIEVDEETIVSSTGALSLKK-------- 921
NT+ V +DG TE V N +IATGS PG + +V+ + ++
Sbjct: 119 NTLLVDLNDGGTESVTFDNAIIATGSSTRLVPGTSLSAN-VVTYEEQILSRELPKSIIIA 177
Query: 922 ---------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVT 972
G V G +VT +EF+ D +V+K+ ++ K G+ TKV
Sbjct: 178 GAGAIGMEFGYVLKNYGVDVTIVEFLPRALP-NEDADVSKEIEKQFKKLGVTILTATKVE 236
Query: 973 GASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPV 1032
+ G +TVT+ +EL + +L +G P GL++ G+ ++ + V
Sbjct: 237 SIADGGSQVTVTVTKDG---VAQELKAEKVLQAIGFAPNVEGYGLDKAGVALTDRKAIGV 293
Query: 1033 NSRFQTVIPNIFAIGDCIHGPMLAHKAEDEGIVCVEGIAGDK 1074
+ +T + +I+AIGD LAH AE +G+V E IAG +
Sbjct: 294 DDYMRTNVGHIYAIGDVNGLLQLAHVAEAQGVVAAETIAGAE 335
Score = 161 bits (410), Expect = 1e-42
Identities = 30/77 (38%), Positives = 44/77 (57%)
Query: 452 GIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAME 511
G + V KFPF AN++A D GFVK++ D ++LG H++G EL+ E LA
Sbjct: 369 GYDVVVAKFPFTANAKAHGVGDPSGFVKLVADAKHGELLGGHLVGHDVAELLPELTLAQR 428
Query: 512 YGASCEDVARTCHAHPT 528
+ + ++AR H HPT
Sbjct: 429 WDLTASELARNVHTHPT 445
Score = 122 bits (308), Expect = 2e-29
Identities = 32/80 (40%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
Query: 528 TVCVEKNDTLGGTCLNVGCIPSKALLNNSHYYHMAHSGDMKARGIEVEGVKLNLETMMGT 587
T VE GG CLNVGCIPSKALL N+ H+ D KA GI E V +
Sbjct: 29 TAIVEP-KYWGGVCLNVGCIPSKALLRNAELVHIFTK-DAKAFGISGE-VTFDYGIAYDR 85
Query: 588 KSAAVKALTGGIAHLFKSNK 607
+ G+ L K NK
Sbjct: 86 SRKVAEGRVAGVHFLMKKNK 105
>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A
{Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 458
Score = 342 bits (881), Expect = e-107
Identities = 75/286 (26%), Positives = 124/286 (43%), Gaps = 35/286 (12%)
Query: 810 NYHLATKLFTQAGD----KGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGK 865
+H A++ + +L++ + K V LT G+A L K + V ++G K
Sbjct: 60 QFHQASRFTEPSPLGISVASPRLDIGQSVAWKDGIVDRLTTGVAALLKKHGVKVVHGWAK 119
Query: 866 ITGPNTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGIEVDEETIVSSTGALSLKK---- 921
+ V V + ++ +++L+ATGS P + + ++SST AL+ K
Sbjct: 120 VLDGKQVEV-----DGQRIQCEHLLLATGSSSVELPMLPLGGP-VISSTEALAPKALPQH 173
Query: 922 -------------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLG 968
G + +LGA+V+ +E I D E+ L K G+ LG
Sbjct: 174 LVVVGGGYIGLELGIAYRKLGAQVSVVEARERILP-TYDSELTAPVAESLKKLGIALHLG 232
Query: 969 TKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKG 1028
V G + + + L D +LV VGRRP T LE + ++ +
Sbjct: 233 HSVEGYENG---CLLANDGKG---GQLRLEADRVLVAVGRRPRTKGFNLECLDLKMNGAA 286
Query: 1029 RVPVNSRFQTVIPNIFAIGDCIHGPMLAHKAEDEGIVCVEGIAGDK 1074
+ ++ R QT + N++AIGD PMLAH+A +G + E IAG
Sbjct: 287 -IAIDERCQTSMHNVWAIGDVAGEPMLAHRAMAQGEMVAEIIAGKA 331
Score = 168 bits (429), Expect = 3e-45
Identities = 33/77 (42%), Positives = 44/77 (57%)
Query: 452 GIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAME 511
G++ V +FPFAAN RA + GFV+V+ + +LG +G A EL ++E
Sbjct: 363 GLDCIVAQFPFAANGRAMSLESKSGFVRVVARRDNHLILGWQAVGVAVSELSTAFAQSLE 422
Query: 512 YGASCEDVARTCHAHPT 528
GA EDVA T HAHPT
Sbjct: 423 MGACLEDVAGTIHAHPT 439
Score = 137 bits (348), Expect = 1e-34
Identities = 33/81 (40%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 528 TVCVEKNDTLGGTCLNVGCIPSKALLNNSHYYHMA-HSGDMKARGIEVEGVKLNLETMMG 586
TV VE LGGTCLN+GCIPSKAL++ + +H A + GI V +L++ +
Sbjct: 31 TVLVEG-QALGGTCLNIGCIPSKALIHVAEQFHQASRFTEPSPLGISVASPRLDIGQSVA 89
Query: 587 TKSAAVKALTGGIAHLFKSNK 607
K V LT G+A L K +
Sbjct: 90 WKDGIVDRLTTGVAALLKKHG 110
>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural
genomics, PSI-2, protein structure initiative; HET: ADP;
2.50A {Sulfolobus solfataricus}
Length = 466
Score = 338 bits (869), Expect = e-106
Identities = 60/284 (21%), Positives = 108/284 (38%), Gaps = 29/284 (10%)
Query: 814 ATKLFTQA---GDKGVKLNLETMMGTKSAAVKA-LTGGIAHLFKSNKVTQLNGHGKITGP 869
+ + + + L+ T+ K + ++ + +T G+ KI P
Sbjct: 57 VIQTAWRLTNIANVKIPLDFSTVQDRKDYVQELRFKQHKRNMSQYETLTFYKGYVKIKDP 116
Query: 870 NTVTVIKSDGSTEEVKTKNILIATGSEVT--PFPGIEVDEETIVSSTGALSLKK------ 921
V V +G E +T+ ++IA+G+E PG+E + S +K
Sbjct: 117 THVIVKTDEGKEIEAETRYMIIASGAETAKLRLPGVEYCLTSDDIFGYKTSFRKLPQDMV 176
Query: 922 -----------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTK 970
S++ +G + IE ++ D ++ IL + K +
Sbjct: 177 IIGAGYIGLEIASIFRLMGVQTHIIEMLDRALITLEDQDIVNTLLSIL---KLNIKFNSP 233
Query: 971 VTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRV 1030
VT K D+ I + KD K+ + +++++ GRRP G EIG+ + G +
Sbjct: 234 VTEVKKIKDDEYEVIYSTKDG-SKKSIFTNSVVLAAGRRPVIPE-GAREIGLSISKTG-I 290
Query: 1031 PVNSRFQTVIPNIFAIGDCIHGPMLAHKAEDEGIVCVEGIAGDK 1074
V+ +T IPN+FA GD H A I I +
Sbjct: 291 VVDETMKTNIPNVFATGDANGLAPYYHAAVRMSIAAANNIMANG 334
Score = 168 bits (428), Expect = 6e-45
Identities = 20/77 (25%), Positives = 41/77 (53%)
Query: 452 GIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAME 511
GIE ++ + A+ +G +K++ ++ + +++G +IG + LINE LA+
Sbjct: 369 GIEIVEAEYNMEEDVSAQIYGQKEGVLKLIFERGSMRLIGAWMIGVHSQYLINELGLAVA 428
Query: 512 YGASCEDVARTCHAHPT 528
YG + + +A HP+
Sbjct: 429 YGLNAKQLASFAEQHPS 445
Score = 127 bits (321), Expect = 4e-31
Identities = 14/81 (17%), Positives = 25/81 (30%), Gaps = 8/81 (9%)
Query: 528 TVCVEKNDTLGGTCLNVGCIPSKALLNNSHYYHMAHSGDMKARGIEVEGVKLNLETMMGT 587
+ + LGG CL GC+PSK + I + L+ T+
Sbjct: 30 VLMADPKGELGGNCLYSGCVPSKTVREVIQTAWRLT-------NIANVKIPLDFSTVQDR 82
Query: 588 KSAAVKA-LTGGIAHLFKSNK 607
K + ++ +
Sbjct: 83 KDYVQELRFKQHKRNMSQYET 103
>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD;
2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1
Length = 499
Score = 339 bits (871), Expect = e-105
Identities = 54/274 (19%), Positives = 102/274 (37%), Gaps = 30/274 (10%)
Query: 824 KGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGP------NTVTVIKS 877
K++L + A + I S V + G G++ + + +
Sbjct: 77 DDAKISLPQIHARVKTLAAAQSADITAQLLSMGVQVIAGRGELIDSTPGLARHRIKATAA 136
Query: 878 DGSTEEVKTKNILIATGSEVTPFPGIEVDEETIVSSTGALSLKK---------------- 921
DGST E + +L+ATG+ P + D E I++ L
Sbjct: 137 DGSTSEHEADVVLVATGASPRILPSAQPDGERILTWRQLYDLDALPDHLIVVGSGVTGAE 196
Query: 922 -GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDN 980
+ LG VT + + + D + A + ++G++ + +++G
Sbjct: 197 FVDAYTELGVPVTVVASQDHVLP-YEDADAALVLEESFAERGVRLFKNARAASVTRTGAG 255
Query: 981 ITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVI 1040
+ VT+ + + L+ +G P T LGLE +GI+ + V+ +T+
Sbjct: 256 VLVTMTD------GRTVEGSHALMTIGSVPNTSGLGLERVGIQLGRGNYLTVDRVSRTLA 309
Query: 1041 PNIFAIGDCIHGPMLAHKAEDEGIVCVEGIAGDK 1074
I+A GDC LA A +G + + G+
Sbjct: 310 TGIYAAGDCTGLLPLASVAAMQGRIAMYHALGEG 343
Score = 154 bits (391), Expect = 6e-40
Identities = 21/77 (27%), Positives = 39/77 (50%)
Query: 452 GIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAME 511
+ + P N+RAK + GFVK+ + T V+G ++ P A ELI +A++
Sbjct: 376 SVAARTIMLPLRTNARAKMSEMRHGFVKIFCRRSTGVVIGGVVVAPIASELILPIAVAVQ 435
Query: 512 YGASCEDVARTCHAHPT 528
+ ++A+T +P+
Sbjct: 436 NRITVNELAQTLAVYPS 452
Score = 114 bits (289), Expect = 8e-27
Identities = 13/79 (16%), Positives = 27/79 (34%), Gaps = 1/79 (1%)
Query: 529 VCVEKNDTLGGTCLNVGCIPSKALLNNSHYYHMAHSGDMKARGIEVEGVKLNLETMMGTK 588
++ D +GG + C+PSK + ++ I+ + K++L +
Sbjct: 32 TVIDC-DGIGGAAVLDDCVPSKTFIASTGLRTELRRAPHLGFHIDFDDAKISLPQIHARV 90
Query: 589 SAAVKALTGGIAHLFKSNK 607
A + I S
Sbjct: 91 KTLAAAQSADITAQLLSMG 109
>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H,
structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia
psychrerythraea}
Length = 492
Score = 326 bits (838), Expect = e-101
Identities = 53/273 (19%), Positives = 94/273 (34%), Gaps = 33/273 (12%)
Query: 824 KGVKLNLETMM----GTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDG 879
+ +N + +M + V + + + +K+ G K +T+ V
Sbjct: 78 DRISVNGKAVMKRIQTERDRFVGFVVESVESFDEQDKI---RGFAKFLDEHTLQV----D 130
Query: 880 STEEVKTKNILIATGSEVTPFPGIEVDEETIVSSTGALSLKK-----------------G 922
+V K I+IATGS + ++++ L G
Sbjct: 131 DHSQVIAKRIVIATGSRPNYPEFLAAAGSRLLTNDNLFELNDLPKSVAVFGPGVIGLELG 190
Query: 923 SVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNIT 982
RLG V ++ D E+ + ++ ++ F +V + D +
Sbjct: 191 QALSRLGVIVKVFGRSGSVAN-LQDEEMKRYAEKTFNEEFY-FDAKARVISTIEKEDAVE 248
Query: 983 VTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVN-SRFQTVIP 1041
V + +K S +L GR+ LGLE IE D+K + QT +
Sbjct: 249 VIYFDKSG--QKTTESFQYVLAATGRKANVDKLGLENTSIELDKKNSPLFDELTLQTSVD 306
Query: 1042 NIFAIGDCIHGPMLAHKAEDEGIVCVEGIAGDK 1074
+IF GD + L H+A D+G V
Sbjct: 307 HIFVAGDANNTLTLLHEAADDGKVAGTNAGAYP 339
Score = 161 bits (409), Expect = 3e-42
Identities = 17/78 (21%), Positives = 32/78 (41%)
Query: 452 GIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAME 511
Y VG+ F R++ G + V D+ + + LG + GPAA + + A +
Sbjct: 378 AANYVVGQVSFEGQGRSRVMGKNKGLLNVYADRTSGEFLGAEMFGPAAEHIGHLLAWARQ 437
Query: 512 YGASCEDVARTCHAHPTV 529
+ + + HP +
Sbjct: 438 QQMTVQAMLTMPFYHPVI 455
Score = 118 bits (299), Expect = 4e-28
Identities = 20/84 (23%), Positives = 36/84 (42%), Gaps = 7/84 (8%)
Query: 528 TVCVEKNDTLGGTCLNVGCIPSKALLNNSHYYHMAHSGDMKARGIEVEGVKLNLETMM-- 585
V +E G TC VGC+PSK L+ + + A GI+V+ + +N + +M
Sbjct: 34 VVLIEG-GAYGTTCARVGCMPSKLLIAAADASYHASQT--DLFGIQVDRISVNGKAVMKR 90
Query: 586 --GTKSAAVKALTGGIAHLFKSNK 607
+ V + + + +K
Sbjct: 91 IQTERDRFVGFVVESVESFDEQDK 114
>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor;
HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP:
c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A*
3q6j_A*
Length = 523
Score = 315 bits (808), Expect = 2e-96
Identities = 57/288 (19%), Positives = 102/288 (35%), Gaps = 32/288 (11%)
Query: 811 YHLATKLFTQAG--DKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQ---LNGHGK 865
LA Q D K+ + A + GI + ++ LN K
Sbjct: 100 LMLARTFSGQYWFPDMTEKVVGIKEVVDLFRAGRNGPHGIMNFQSKEQLNLEYILNCPAK 159
Query: 866 ITGPNTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGIEVDEE-TIVSSTGALSLKK--- 921
+ +TV + + K KN+++A G+ V+ + +T L
Sbjct: 160 VIDNHTVEA-----AGKVFKAKNLILAVGAGPGTLDVPGVNAKGVFDHATLVEELDYEPG 214
Query: 922 ---------------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFK 966
G + G + + D E + +QGM+
Sbjct: 215 STVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKL-IKDNETRAYVLDRMKEQGMEII 273
Query: 967 LGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDE 1026
G+ VT + + + + + + D + + +G +P + L + +G++
Sbjct: 274 SGSNVTRIEEDANGRVQAVVAMTP-NGEMRIETDFVFLGLGEQPRSAELA-KILGLDLGP 331
Query: 1027 KGRVPVNSRFQTVIPNIFAIGDCIHGPMLAHKAEDEGIVCVEGIAGDK 1074
KG V VN QT +PN++A+GD I GPM KA G + G+K
Sbjct: 332 KGEVLVNEYLQTSVPNVYAVGDLIGGPMEMFKARKSGCYAARNVMGEK 379
Score = 138 bits (349), Expect = 2e-34
Identities = 18/93 (19%), Positives = 30/93 (32%), Gaps = 16/93 (17%)
Query: 452 GIEYKVGKFPFAA----------------NSRAKTNNDTDGFVKVLGDKLTDKVLGVHII 495
G E K P + K GF K++ D T KVLG H +
Sbjct: 411 GHEIVTIKMPPDTENGLNVALPASDRTMLYAFGKGTAHMSGFQKIVIDAKTRKVLGAHHV 470
Query: 496 GPAAGELINEAVLAMEYGASCEDVARTCHAHPT 528
G A + + ++ G + +++
Sbjct: 471 GYGAKDAFQYLNVLIKQGLTVDELGDMDELFLN 503
Score = 112 bits (281), Expect = 1e-25
Identities = 12/81 (14%), Positives = 27/81 (33%), Gaps = 1/81 (1%)
Query: 528 TVCVEKNDTLGGTCLNVGCIPSKALLNNSHYYHMAHSGDMKARGIEVEGVKLNLETMMGT 587
+ V++ LGG+C + C+P + + +A + K+ +
Sbjct: 69 QLIVDRWPFLGGSCPHNACVPHHLFSDCAAELMLART-FSGQYWFPDMTEKVVGIKEVVD 127
Query: 588 KSAAVKALTGGIAHLFKSNKA 608
A + GI + +
Sbjct: 128 LFRAGRNGPHGIMNFQSKEQL 148
>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase,
oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa}
PDB: 1zx9_A*
Length = 467
Score = 312 bits (802), Expect = 4e-96
Identities = 58/285 (20%), Positives = 104/285 (36%), Gaps = 30/285 (10%)
Query: 811 YHLATKLFTQAG--DKGVKLNLETMMGTKSAAVKALTGG--IAHLFKSNKVTQLNGHGKI 866
HL + G ++ ++ + A V L L + +T ++G +
Sbjct: 60 AHLRRESPFDGGIAATVPTIDRSKLLAQQQARVDELRHAKYEGILGGNPAITVVHGEARF 119
Query: 867 TGPNTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGIEVDEETIVSSTGALSLKK----- 921
++TV ++G V L+ATG+ P + E +ST AL+
Sbjct: 120 KDDQSLTVRLNEGGERVVMFDRCLVATGASPAVPPIPGLKESPYWTSTEALASDTIPERL 179
Query: 922 ------------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGT 969
+ RLG++VT + D + + +G++ T
Sbjct: 180 AVIGSSVVALELAQAFARLGSKVTVLARNTLFFRE--DPAIGEAVTAAFRAEGIEVLEHT 237
Query: 970 KVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGR 1029
+ + + +T + EL D LLV GR P T +L L+ G+ + +G
Sbjct: 238 QASQVAHMDGEFVLTTTH-------GELRADKLLVATGRTPNTRSLALDAAGVTVNAQGA 290
Query: 1030 VPVNSRFQTVIPNIFAIGDCIHGPMLAHKAEDEGIVCVEGIAGDK 1074
+ ++ +T PNI+A GDC P + A G + G
Sbjct: 291 IVIDQGMRTSNPNIYAAGDCTDQPQFVYVAAAAGTRAAINMTGGD 335
Score = 154 bits (393), Expect = 2e-40
Identities = 24/77 (31%), Positives = 40/77 (51%)
Query: 452 GIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAME 511
GIE RA N DT GF+K++ ++ + +++GV + P AGELI A LA+
Sbjct: 367 GIETDSRTLTLDNVPRALANFDTRGFIKLVIEEGSHRLIGVQAVAPEAGELIQTAALAIR 426
Query: 512 YGASCEDVARTCHAHPT 528
+ +++A + T
Sbjct: 427 NRMTVQELADQLFPYLT 443
Score = 106 bits (266), Expect = 5e-24
Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 4/82 (4%)
Query: 528 TVCVEKNDTLGGTCLNVGCIPSKALLNNSHYYHMAHSGDMKARGIEVEGVKLNLETMMGT 587
+E+ T+GGTC+NVGC+PSK ++ +H H+ GI ++ ++
Sbjct: 30 VTLIER-GTIGGTCVNVGCVPSKIMIRAAHIAHLRRESP-FDGGIAATVPTIDRSKLLAQ 87
Query: 588 KSAAVKALTGG--IAHLFKSNK 607
+ A V L L +
Sbjct: 88 QQARVDELRHAKYEGILGGNPA 109
>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A
{Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 500
Score = 245 bits (628), Expect = 3e-71
Identities = 57/311 (18%), Positives = 104/311 (33%), Gaps = 73/311 (23%)
Query: 826 VKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGST---- 881
NL ++ + ++ L +KV G N + + + +
Sbjct: 73 FSFNLPLLVERRDKYIQRLNNIYRQNLSKDKVDLYEGTASFLSENRILIKGTKDNNNKDN 132
Query: 882 -----EEVKTKNILIATGSE--VTPFPGIEVDEETIVSSTGALSLKK------------- 921
E ++ +NILIA G++ P GI E +SS ++K+
Sbjct: 133 GPLNEEILEGRNILIAVGNKPVFPPVKGI----ENTISSDEFFNIKESKKIGIVGSGYIA 188
Query: 922 ---GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSG 978
+V RLG + N I D V + + K + V K
Sbjct: 189 VELINVIKRLGIDSYIFARGNRILR-KFDESVINVLENDMKKNNINIVTFADVVEIKKVS 247
Query: 979 DN-ITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQ 1037
D +++ + + + D ++ CVGR P T NL LE++ +E + + V+ +
Sbjct: 248 DKNLSIHLSD-----GRIYEHFDHVIYCVGRSPDTENLKLEKLNVETN-NNYIVVDENQR 301
Query: 1038 TVIPNIFAIGDC----------------------------------IHGPMLAHKAEDEG 1063
T + NI+A+GDC + L A + G
Sbjct: 302 TSVNNIYAVGDCCMVKKSKEIEDLNLLKLYNEERYLNKKENVTEDIFYNVQLTPVAINAG 361
Query: 1064 IVCVEGIAGDK 1074
+ + + K
Sbjct: 362 RLLADRLFLKK 372
Score = 115 bits (290), Expect = 6e-27
Identities = 18/79 (22%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Query: 452 GIEYKVGKFP--FAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLA 509
++ KF F + + ++K++ + + G+HIIG A E++ +A
Sbjct: 409 NVKIYESKFTNLFFSVYDIEPELKEKTYLKLVCVGKDELIKGLHIIGLNADEIVQGFAVA 468
Query: 510 MEYGASCEDVARTCHAHPT 528
++ A+ +D T HPT
Sbjct: 469 LKMNATKKDFDETIPIHPT 487
Score = 104 bits (262), Expect = 2e-23
Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 4/80 (5%)
Query: 528 TVCVEKNDTLGGTCLNVGCIPSKALLNNSHYYHMAHSGDMKARGIEVEGVKLNLETMMGT 587
VEK LGGTC+NVGC+P K + N + + + + + G + + NL ++
Sbjct: 28 VALVEK-SRLGGTCVNVGCVPKKIMFNAASVHDILE--NSRHYGFDTK-FSFNLPLLVER 83
Query: 588 KSAAVKALTGGIAHLFKSNK 607
+ ++ L +K
Sbjct: 84 RDKYIQRLNNIYRQNLSKDK 103
>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD,
mitochondrion, redox-active center, selenium,
selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus
musculus} PDB: 1zkq_A* 1zdl_A*
Length = 488
Score = 224 bits (574), Expect = 5e-64
Identities = 65/272 (23%), Positives = 109/272 (40%), Gaps = 23/272 (8%)
Query: 823 DKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTE 882
+ V+ N +TM VK+L G + KV N +TV + G
Sbjct: 85 AQPVQHNWKTMAEAVQNHVKSLNWGHRVQLQDRKVKYFNIKASFVDEHTVRGVDKGGKAT 144
Query: 883 EVKTKNILIATGSEVTPFPGIEVDEETIVSSTGALSLKK-----------------GSVW 925
+ ++I+IATG ++ E ++S LK+
Sbjct: 145 LLSAEHIVIATGGRPRYPTQVKGALEYGITSDDIFWLKESPGKTLVVGASYVALECAGFL 204
Query: 926 GRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDN-ITVT 984
+G + T M +I G D +++ + G QF G + K N + VT
Sbjct: 205 TGIGLDTTV--MMRSIPLRGFDQQMSSLVTEHMESHGTQFLKGCVPSHIKKLPTNQLQVT 262
Query: 985 IENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKG-RVPVNSRFQTVIPNI 1043
E+ K++ + D +L +GR P T L LE+ GI + K ++ V+++ T +P+I
Sbjct: 263 WEDHAS-GKEDTGTFDTVLWAIGRVPETRTLNLEKAGISTNPKNQKIIVDAQEATSVPHI 321
Query: 1044 FAIGDCIHG-PMLAHKAEDEGIVCVEGIAGDK 1074
+AIGD G P L A G + + + G
Sbjct: 322 YAIGDVAEGRPELTPTAIKAGKLLAQRLFGKS 353
Score = 86.1 bits (214), Expect = 2e-17
Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 4/82 (4%)
Query: 452 GIEYKVGKFPFAANSRAKTNNDTD---GFVKVLGDKLTD-KVLGVHIIGPAAGELINEAV 507
+ V + T D D ++K++ + VLG+H +GP AGE+
Sbjct: 386 HGQEHVEVYHAYYKPLEFTVADRDASQCYIKMVCMREPPQLVLGLHFLGPNAGEVTQGFA 445
Query: 508 LAMEYGASCEDVARTCHAHPTV 529
L ++ GAS V +T HPT
Sbjct: 446 LGIKCGASYAQVMQTVGIHPTC 467
Score = 75.3 bits (186), Expect = 4e-14
Identities = 26/72 (36%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Query: 537 LGGTCLNVGCIPSKALLNNSHYYHMAHSGDMKARGIEV-EGVKLNLETMMGTKSAAVKAL 595
LGGTC+NVGCIP K + + M D G EV + V+ N +TM VK+L
Sbjct: 49 LGGTCVNVGCIPKKLMHQAALLGGMIR--DAHHYGWEVAQPVQHNWKTMAEAVQNHVKSL 106
Query: 596 TGGIAHLFKSNK 607
G + K
Sbjct: 107 NWGHRVQLQDRK 118
>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex,
rossmann fold, HO pyridine nucleotide disulfide
oxidoreductase, electron TRAN oxidoreductase; HET: FAD;
2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A*
2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*
Length = 519
Score = 215 bits (549), Expect = 2e-60
Identities = 59/275 (21%), Positives = 112/275 (40%), Gaps = 27/275 (9%)
Query: 823 DKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTE 882
++ VK + + M+ + +L G + KV N +G+ GP+ + + G +
Sbjct: 111 EETVKHDWDRMIEAVQNHIGSLNWGYRVALREKKVVYENAYGQFIGPHRIKATNNKGKEK 170
Query: 883 EVKTKNILIATGSEVTPFPGIEVDEETIVSSTGALSLKK-----------------GSVW 925
+ LIATG + GI D+E +SS SL
Sbjct: 171 IYSAERFLIATGERPR-YLGIPGDKEYCISSDDLFSLPYCPGKTLVVGASYVALECAGFL 229
Query: 926 GRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDN----I 981
+G +VT + +I G D ++A + + + G++F + +
Sbjct: 230 AGIGLDVTV--MVRSILLRGFDQDMANKIGEHMEEHGIKFIRQFVPIKVEQIEAGTPGRL 287
Query: 982 TVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEK-GRVPVNSRFQTVI 1040
V ++ + + E + +++ +GR T +GLE +G++ +EK G++PV QT +
Sbjct: 288 RVVAQS-TNSEEIIEGEYNTVMLAIGRDACTRKIGLETVGVKINEKTGKIPVTDEEQTNV 346
Query: 1041 PNIFAIGDCIHG-PMLAHKAEDEGIVCVEGIAGDK 1074
P I+AIGD + L A G + + +
Sbjct: 347 PYIYAIGDILEDKVELTPVAIQAGRLLAQRLYAGS 381
Score = 83.4 bits (207), Expect = 1e-16
Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Query: 455 YKVGKFPFAANSRAKTNNDTDGFVKVLGD-KLTDKVLGVHIIGPAAGELINEAVLAMEYG 513
Y +P ++ NN + K++ + K ++V+G H++GP AGE+ A++ G
Sbjct: 422 YHSYFWPLEWTIPSRDNNKC--YAKIICNTKDNERVVGFHVLGPNAGEVTQGFAAALKCG 479
Query: 514 ASCEDVARTCHAHPTV 529
+ + + T HP
Sbjct: 480 LTKKQLDSTIGIHPVC 495
Score = 74.6 bits (184), Expect = 6e-14
Identities = 28/106 (26%), Positives = 41/106 (38%), Gaps = 13/106 (12%)
Query: 506 AVLAMEYGAS---CEDVARTCHAHPTVCVEKNDTLGGTCLNVGCIPSKALLNNSHYYHMA 562
A A +YG + V T LGGTC+NVGCIP K + +
Sbjct: 48 AKEAAQYGKKVMVLDFVTPTPLG-------TRWGLGGTCVNVGCIPKKLMHQAALLGQAL 100
Query: 563 HSGDMKARGIEV-EGVKLNLETMMGTKSAAVKALTGGIAHLFKSNK 607
D + G +V E VK + + M+ + +L G + K
Sbjct: 101 Q--DSRNYGWKVEETVKHDWDRMIEAVQNHIGSLNWGYRVALREKK 144
>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase,
rossmann, flavoprotein, alternative initiati
mitochondrion, NADP; HET: FAD; 1.75A {Drosophila
melanogaster} PDB: 2nvk_X* 3dh9_A*
Length = 483
Score = 209 bits (534), Expect = 8e-59
Identities = 60/271 (22%), Positives = 109/271 (40%), Gaps = 25/271 (9%)
Query: 823 DKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTE 882
D +K + ++ + +K++ + KV +NG G +T+ G
Sbjct: 89 DDKIKPDWHKLVQSVQNHIKSVNWVTRVDLRDKKVEYINGLGSFVDSHTLLAKLKSGE-R 147
Query: 883 EVKTKNILIATGSEVTPFPGIEVDEETIVSSTGALSLKK-----------------GSVW 925
+ + +IA G +P I E ++S SL +
Sbjct: 148 TITAQTFVIAVGGRPR-YPDIPGAVEYGITSDDLFSLDREPGKTLVVGAGYIGLECAGFL 206
Query: 926 GRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGD-NITVT 984
LG E T + +I G D ++A+ + ++G+ F T K D + V
Sbjct: 207 KGLGYEPTV--MVRSIVLRGFDQQMAELVAASMEERGIPFLRKTVPLSVEKQDDGKLLVK 264
Query: 985 IENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIF 1044
+NV+ ++ E D +L +GR+ +L L G+ +K ++PV+S+ T + NI+
Sbjct: 265 YKNVET-GEESEDVYDTVLWAIGRKGLVDDLNLPNAGV-TVQKDKIPVDSQEATNVANIY 322
Query: 1045 AIGDCIHG-PMLAHKAEDEGIVCVEGIAGDK 1074
A+GD I+G P L A G + + G
Sbjct: 323 AVGDIIYGKPELTPVAVLAGRLLARRLYGGS 353
Score = 79.5 bits (197), Expect = 2e-15
Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
Query: 453 IEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTD-KVLGVHIIGPAAGELINEAVLAME 511
IE G + + + ++K + ++ D +V G+H IGP AGE+I A++
Sbjct: 391 IEVFHGYYKPTEFFIPQ-KSVRYCYLKAVAERHGDQRVYGLHYIGPVAGEVIQGFAAALK 449
Query: 512 YGASCEDVARTCHAHPTV 529
G + + T HPT
Sbjct: 450 SGLTINTLINTVGIHPTT 467
Score = 77.2 bits (191), Expect = 9e-15
Identities = 27/103 (26%), Positives = 43/103 (41%), Gaps = 6/103 (5%)
Query: 506 AVLAMEYGASCEDVARTCHAHPTVCVEKNDTLGGTCLNVGCIPSKALLNNSHYYHMAHSG 565
A A+ GA VA PT + +GGTC+NVGCIP K + S H
Sbjct: 25 AKEAVLNGAR---VACLDFVKPTPTLGTKWGVGGTCVNVGCIPKKLMHQASLLGEAVH-- 79
Query: 566 DMKARGIEV-EGVKLNLETMMGTKSAAVKALTGGIAHLFKSNK 607
+ A G V + +K + ++ + +K++ + K
Sbjct: 80 EAAAYGWNVDDKIKPDWHKLVQSVQNHIKSVNWVTRVDLRDKK 122
>2x8g_A Thioredoxin glutathione reductase; redox-active center,
detoxification pathway, oxidoreductase, flavoprotein;
HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A*
2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*
Length = 598
Score = 210 bits (536), Expect = 5e-58
Identities = 61/281 (21%), Positives = 105/281 (37%), Gaps = 30/281 (10%)
Query: 820 QAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDG 879
+ N TM+ + + +L G + N+VT LN G++ P+ V + +
Sbjct: 184 SLDRSKISHNWSTMVEGVQSHIGSLNWGYKVALRDNQVTYLNAKGRLISPHEVQITDKNQ 243
Query: 880 STEEVKTKNILIATGSEVTPFPGIEVDEETIVSSTGALSLKK-----------------G 922
+ I++ATG +P I E ++S SL
Sbjct: 244 KVSTITGNKIILATGERPK-YPEIPGAVEYGITSDDLFSLPYFPGKTLVIGASYVALECA 302
Query: 923 SVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLG--------TKVTGA 974
LG +VT + +I G D ++A++ + G++F KV
Sbjct: 303 GFLASLGGDVTV--MVRSILLRGFDQQMAEKVGDYMENHGVKFAKLCVPDEIKQLKVVDT 360
Query: 975 SKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNS 1034
+ + + + D KK E + ++ VGR P + E +G++ D+ GRV
Sbjct: 361 ENNKPGLLLVKGHYTD-GKKFEEEFETVIFAVGREPQLSKVLCETVGVKLDKNGRVVCTD 419
Query: 1035 RFQTVIPNIFAIGDCIHG-PMLAHKAEDEGIVCVEGIAGDK 1074
QT + N++AIGD G P L A G +
Sbjct: 420 DEQTTVSNVYAIGDINAGKPQLTPVAIQAGRYLARRLFAGA 460
Score = 89.3 bits (222), Expect = 2e-18
Identities = 23/78 (29%), Positives = 35/78 (44%)
Query: 452 GIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAME 511
IE F + A ++ V +VLG+H++GP AGE+ +A++
Sbjct: 497 DIEVYHSNFKPLEWTVAHREDNVCYMKLVCRKSDNMRVLGLHVLGPNAGEITQGYAVAIK 556
Query: 512 YGASCEDVARTCHAHPTV 529
GA+ D RT HPT
Sbjct: 557 MGATKADFDRTIGIHPTC 574
Score = 73.5 bits (181), Expect = 2e-13
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
Query: 537 LGGTCLNVGCIPSKALLNNSHYYHMAHSGDMKARGIEVE--GVKLNLETMMGTKSAAVKA 594
LGGTC+NVGCIP K + H D + G ++ + N TM+ + + +
Sbjct: 150 LGGTCVNVGCIPKKLMHQAGLLSHALE--DAEHFGWSLDRSKISHNWSTMVEGVQSHIGS 207
Query: 595 LTGGIAHLFKSNK 607
L G + N+
Sbjct: 208 LNWGYKVALRDNQ 220
>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A
{Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB:
1geu_A* 1ger_A* 1get_A*
Length = 450
Score = 194 bits (496), Expect = 4e-54
Identities = 63/288 (21%), Positives = 109/288 (37%), Gaps = 41/288 (14%)
Query: 812 HLATKLFTQAGDKG-----VKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKI 866
+ + D G K N ET++ +++A + + ++ N V + G +
Sbjct: 58 QIREAIHMYGPDYGFDTTINKFNWETLIASRTAYIDRIHTSYENVLGKNNVDVIKGFARF 117
Query: 867 TGPNTVTVIKSDGSTEEVKTKNILIATGSE--VTPFPGIEVDEETIVSSTGALSLKK--- 921
T+ V + E + +ILIATG PG+E + S G +L
Sbjct: 118 VDAKTLEV-----NGETITADHILIATGGRPSHPDIPGVEY----GIDSDGFFALPALPE 168
Query: 922 --------------GSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKL 967
G V LGA+ E +A D +++ ++ +G Q
Sbjct: 169 RVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPL-PSFDPMISETLVEVMNAEGPQLHT 227
Query: 968 GTKVTGASKSGDN-ITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDE 1026
K+ D +T+ +E+ + D L+ +GR P N+ LE G++ +E
Sbjct: 228 NAIPKAVVKNTDGSLTLELED------GRSETVDCLIWAIGREPANDNINLEAAGVKTNE 281
Query: 1027 KGRVPVNSRFQTVIPNIFAIGDCIHGPMLAHKAEDEGIVCVEGIAGDK 1074
KG + V+ T I I+A+GD L A G E + +K
Sbjct: 282 KGYIVVDKYQNTNIEGIYAVGDNTGAVELTPVAVAAGRRLSERLFNNK 329
Score = 92.2 bits (230), Expect = 1e-19
Identities = 22/78 (28%), Positives = 38/78 (48%)
Query: 452 GIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAME 511
+ KV K F A A T + +K++ +K++G+H IG E++ +A++
Sbjct: 365 DDQVKVYKSSFTAMYTAVTTHRQPCRMKLVCVGSEEKIVGIHGIGFGMDEMLQGFAVALK 424
Query: 512 YGASCEDVARTCHAHPTV 529
GA+ +D T HPT
Sbjct: 425 MGATKKDFDNTVAIHPTA 442
Score = 69.8 bits (172), Expect = 2e-12
Identities = 19/79 (24%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Query: 529 VCVEKNDTLGGTCLNVGCIPSKALLNNSHYYHMAHSGDMKARGIEVEGVKLNLETMMGTK 588
+ + LGGTC+NVGC+P K + + + H G + K N ET++ ++
Sbjct: 30 CALIEAKELGGTCVNVGCVPKKVMWHAAQIREAIHM-YGPDYGFDTTINKFNWETLIASR 88
Query: 589 SAAVKALTGGIAHLFKSNK 607
+A + + ++ N
Sbjct: 89 TAYIDRIHTSYENVLGKNN 107
>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed
with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A
{Saccharomyces cerevisiae}
Length = 479
Score = 189 bits (482), Expect = 7e-52
Identities = 52/268 (19%), Positives = 95/268 (35%), Gaps = 23/268 (8%)
Query: 824 KGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEE 883
+ + N + A V L G + KV + G + V V K D +TE
Sbjct: 87 EHLTFNWPEFKQKRDAYVHRLNGIYQKNLEKEKVDVVFGWARFNKDGNVEVQKRDNTTEV 146
Query: 884 VKTKNILIATGSEVTPFPGIEVDEETIVSSTGALSLKK-----------------GSVWG 926
+IL+ATG + I E S G L++ V+
Sbjct: 147 YSANHILVATGGKAIFPENIPGFELGT-DSDGFFRLEEQPKKVVVVGAGYIGIELAGVFH 205
Query: 927 RLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIE 986
LG+E + + D + K+G+ +K+ K+ + +
Sbjct: 206 GLGSETHLVIRGETVL-RKFDECIQNTITDHYVKEGINVHKLSKIVKVEKNVETDKLK-- 262
Query: 987 NVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAI 1046
+ K D L+ +GR+ + +G E +GI+ + ++ + T +PNI+++
Sbjct: 263 -IHMNDSKSIDDVDELIWTIGRKSHL-GMGSENVGIKLNSHDQIIADEYQNTNVPNIYSL 320
Query: 1047 GDCIHGPMLAHKAEDEGIVCVEGIAGDK 1074
GD + L A G + G +
Sbjct: 321 GDVVGKVELTPVAIAAGRKLSNRLFGPE 348
Score = 84.9 bits (211), Expect = 3e-17
Identities = 20/78 (25%), Positives = 36/78 (46%)
Query: 452 GIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAME 511
KV F A A + + K++ +KV+G+HI+G ++ E++ +A++
Sbjct: 386 KENIKVYNSKFTAMYYAMLSEKSPTRYKIVCAGPNEKVVGLHIVGDSSAEILQGFGVAIK 445
Query: 512 YGASCEDVARTCHAHPTV 529
GA+ D HPT
Sbjct: 446 MGATKADFDNCVAIHPTS 463
Score = 64.5 bits (158), Expect = 9e-11
Identities = 27/108 (25%), Positives = 34/108 (31%), Gaps = 21/108 (19%)
Query: 506 AVLAMEYGASCEDVARTCHAHPTVCVEKNDTLGGTCLNVGCIPSKALLNNSHYYHMAHSG 565
A A YGA VE LGGTC+NVGC+P K + S
Sbjct: 27 ARRAASYGAK---TL---------LVEA-KALGGTCVNVGCVPKKVMWYASDLATRVS-- 71
Query: 566 DMKARGIEV------EGVKLNLETMMGTKSAAVKALTGGIAHLFKSNK 607
G+ E + N + A V L G + K
Sbjct: 72 HANEYGLYQNLPLDKEHLTFNWPEFKQKRDAYVHRLNGIYQKNLEKEK 119
>1fec_A Trypanothione reductase; redox-active center, oxidoreductase,
flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia
fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A*
1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A*
2x50_A* 2ve2_A*
Length = 490
Score = 185 bits (473), Expect = 1e-50
Identities = 67/281 (23%), Positives = 114/281 (40%), Gaps = 35/281 (12%)
Query: 820 QAGDKGVKLNLETMMGTKSAAVKALTGGIA-HLFKSNKVTQLNGHGKITGPNTVTV---- 874
+ + V+ N + ++ K+ AV + + +T G G + +TV V
Sbjct: 81 ELDRESVRPNWKALIAAKNKAVSGINDSYEGMFADTEGLTFHQGFGALQDNHTVLVRESA 140
Query: 875 IKSDGSTEEVKTKNILIATGSEVTPFPGIEVDEETIVSSTGALSLKK------------- 921
+ E + T+ IL+ATGS GIE D+ I +S A L +
Sbjct: 141 DPNSAVLETLDTEYILLATGSWPQ-HLGIEGDDLCI-TSNEAFYLDEAPKRALCVGGGYI 198
Query: 922 ----GSVWGRL---GAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGA 974
++ G +V + I G D E+ KQ L G+ +
Sbjct: 199 SIEFAGIFNAYKARGGQVDLAYRGDMIL-RGFDSELRKQLTEQLRANGINVRTHENPAKV 257
Query: 975 SKSGDN-ITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVN 1033
+K+ D V E+ E D +++ +GR P + L LE+ G+E + G + V+
Sbjct: 258 TKNADGTRHVVFES------GAEADYDVVMLAIGRVPRSQTLQLEKAGVEVAKNGAIKVD 311
Query: 1034 SRFQTVIPNIFAIGDCIHGPMLAHKAEDEGIVCVEGIAGDK 1074
+ +T + NI+AIGD ML A +EG V+ + +K
Sbjct: 312 AYSKTNVDNIYAIGDVTDRVMLTPVAINEGAAFVDTVFANK 352
Score = 82.6 bits (205), Expect = 2e-16
Identities = 19/79 (24%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Query: 452 GIEYKVGKFPFAANSRAKTNNDTDGF-VKVLGDKLTDKVLGVHIIGPAAGELINEAVLAM 510
+ V + F + + F V+++ + +VLGVH++G ++ E+I + +
Sbjct: 385 YDQVAVYESSFTPLMHNISGSTYKKFMVRIVTNHADGEVLGVHMLGDSSPEIIQSVAICL 444
Query: 511 EYGASCEDVARTCHAHPTV 529
+ GA D T HPT
Sbjct: 445 KMGAKISDFYNTIGVHPTS 463
Score = 70.3 bits (173), Expect = 2e-12
Identities = 25/106 (23%), Positives = 42/106 (39%), Gaps = 8/106 (7%)
Query: 509 AMEYGASCEDVARTCHAHPTVCVEKNDTLGGTCLNVGCIPSKALLNNSHYYHMAHSGDMK 568
A + VA LGGTC+NVGC+P K ++ ++Y +
Sbjct: 23 ASLHKKR---VA-VIDLQKHHGPPHYAALGGTCVNVGCVPKKLMVTGANYMDTIR--ESA 76
Query: 569 ARGIEV--EGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKALKII 612
G E+ E V+ N + ++ K+ AV + +F + L
Sbjct: 77 GFGWELDRESVRPNWKALIAAKNKAVSGINDSYEGMFADTEGLTFH 122
>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural
genomics center for infectious gluathione reductase,
oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}
Length = 484
Score = 184 bits (470), Expect = 3e-50
Identities = 49/267 (18%), Positives = 104/267 (38%), Gaps = 28/267 (10%)
Query: 825 GVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEV 884
N E ++ K+ + L G +++ V +T+ + + E +
Sbjct: 97 DPIFNWEKLVAAKNKEISRLEGLYREGLQNSNVHIYESRAVFVDEHTLELSVTG---ERI 153
Query: 885 KTKNILIATGSEVTPFPGIEVDEETIVSSTGALSLKK-----------------GSVWGR 927
+ ILIATG+++ I+ + + +S L+K +++
Sbjct: 154 SAEKILIATGAKIVSNSAIKGSDLCL-TSNEIFDLEKLPKSIVIVGGGYIGVEFANIFHG 212
Query: 928 LGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIEN 987
LG + T + + I D ++ + + +G+ V+ + + V + N
Sbjct: 213 LGVKTTLLHRGDLIL-RNFDYDLRQLLNDAMVAKGISIIYEATVSQVQSTENCYNVVLTN 271
Query: 988 VKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIG 1047
+ + D +++ GR P T LGLE G++ +E G V V+ + T + +I+A+G
Sbjct: 272 ------GQTICADRVMLATGRVPNTTGLGLERAGVKVNEFGAVVVDEKMTTNVSHIWAVG 325
Query: 1048 DCIHGPMLAHKAEDEGIVCVEGIAGDK 1074
D L A + + V+ +
Sbjct: 326 DVTGHIQLTPVAIHDAMCFVKNAFENT 352
Score = 86.4 bits (215), Expect = 1e-17
Identities = 15/78 (19%), Positives = 36/78 (46%)
Query: 452 GIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAME 511
++ + F + + F+K++ D + V+G H++G AGE+ ++++
Sbjct: 385 YKRVEIYRTVFRPMRNVLSGSPEKMFMKLVVDGESRIVVGAHVLGENAGEIAQLIGISLK 444
Query: 512 YGASCEDVARTCHAHPTV 529
+ + +T HPT+
Sbjct: 445 GKLTKDIFDKTMAVHPTM 462
Score = 73.7 bits (182), Expect = 1e-13
Identities = 23/102 (22%), Positives = 35/102 (34%), Gaps = 15/102 (14%)
Query: 506 AVLAMEYGASCEDVARTCHAHPTVCVEKNDTLGGTCLNVGCIPSKALLNNSHYYHMAHSG 565
A LA G VA E+ +GGTC+ GC+P K S Y
Sbjct: 42 ARLAGALGKR---VA---------IAEE-YRIGGTCVIRGCVPKKLYFYASQYAQEFS-- 86
Query: 566 DMKARGIEVEGVKLNLETMMGTKSAAVKALTGGIAHLFKSNK 607
G + N E ++ K+ + L G +++
Sbjct: 87 KSIGFGWKYADPIFNWEKLVAAKNKEISRLEGLYREGLQNSN 128
>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide,
acetylation, alternative initiation, cytoplasm, FAD,
flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A
{Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A*
1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A*
3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A*
1xan_A* 5grt_A* ...
Length = 478
Score = 182 bits (464), Expect = 2e-49
Identities = 54/275 (19%), Positives = 101/275 (36%), Gaps = 35/275 (12%)
Query: 826 VKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEVK 885
K N + + A V L + + + + GH T T+ S ++
Sbjct: 92 GKFNWRVIKEKRDAYVSRLNAIYQNNLTKSHIEIIRGHAAFTSDPKPTIEVSG---KKYT 148
Query: 886 TKNILIATGS-----EVTPFPGIEVDEETIVSSTGALSLKK-----------------GS 923
+ILIATG + PG + ++S G L++
Sbjct: 149 APHILIATGGMPSTPHESQIPGASL----GITSDGFFQLEELPGRSVIVGAGYIAVEMAG 204
Query: 924 VWGRLGAEVTAIEFMNAIGGM-GIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNIT 982
+ LG++ + + + + + D ++ L G++ ++V K+ +
Sbjct: 205 ILSALGSKTSLMIRHDKV--LRSFDSMISTNCTEELENAGVEVLKFSQVKEVKKTLSGLE 262
Query: 983 VTIENVKD---PTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTV 1039
V++ P D LL +GR P T +L L ++GI+ D+KG + V+ T
Sbjct: 263 VSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKDLSLNKLGIQTDDKGHIIVDEFQNTN 322
Query: 1040 IPNIFAIGDCIHGPMLAHKAEDEGIVCVEGIAGDK 1074
+ I+A+GD +L A G + K
Sbjct: 323 VKGIYAVGDVCGKALLTPVAIAAGRKLAHRLFEYK 357
Score = 83.3 bits (207), Expect = 1e-16
Identities = 20/78 (25%), Positives = 33/78 (42%)
Query: 452 GIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAME 511
K F A T T +K++ +KV+G+H+ G E++ +A++
Sbjct: 393 IENVKTYSTSFTPMYHAVTKRKTKCVMKMVCANKEEKVVGIHMQGLGCDEMLQGFAVAVK 452
Query: 512 YGASCEDVARTCHAHPTV 529
GA+ D T HPT
Sbjct: 453 MGATKADFDNTVAIHPTS 470
Score = 72.9 bits (180), Expect = 2e-13
Identities = 28/102 (27%), Positives = 37/102 (36%), Gaps = 15/102 (14%)
Query: 506 AVLAMEYGASCEDVARTCHAHPTVCVEKNDTLGGTCLNVGCIPSKALLNNSHYYHMAHSG 565
A A E GA A VE LGGTC+NVGC+P K + N + + H
Sbjct: 36 ARRAAELGAR---AA---------VVES-HKLGGTCVNVGCVPKKVMWNTAVHSEFMH-- 80
Query: 566 DMKARGIEVEGVKLNLETMMGTKSAAVKALTGGIAHLFKSNK 607
D G K N + + A V L + +
Sbjct: 81 DHADYGFPSCEGKFNWRVIKEKRDAYVSRLNAIYQNNLTKSH 122
>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping
sickness, flavoPro redox-active center; HET: FAD WPF;
1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A*
2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A*
1bzl_A* 1aog_A*
Length = 495
Score = 181 bits (462), Expect = 4e-49
Identities = 69/283 (24%), Positives = 114/283 (40%), Gaps = 39/283 (13%)
Query: 820 QAGDKGVKLNLETMMGTKSAAVKALTGGIA-HLFKSNKVTQLNGHGKITGPNTVTV---- 874
+ VK N + ++ K+ AV + + + G G + N V V
Sbjct: 85 EFDGSSVKANWKKLIAAKNEAVLDINKSYEGMFNDTEGLDFFLGWGSLESKNVVVVRETA 144
Query: 875 IKSDGSTEEVKTKNILIATGSE--VTPFPGIEVDEETIVSSTGALSLKK----------- 921
E ++ +IL+ATGS + PGIE +SS A L +
Sbjct: 145 DPKSAVKERLQADHILLATGSWPQMPAIPGIEH----CISSNEAFYLPEPPRRVLTVGGG 200
Query: 922 ------GSVWGRL---GAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVT 972
++ G +VT N I G D + ++ + L G++
Sbjct: 201 FISVEFAGIFNAYKPPGGKVTLCYRNNLIL-RGFDETIREEVTKQLTANGIEIMTNENPA 259
Query: 973 GASKSGDN-ITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVP 1031
S + D VT E+ + L D +++ +GR P T++L L +G++ KG V
Sbjct: 260 KVSLNTDGSKHVTFES------GKTLDVDVVMMAIGRIPRTNDLQLGNVGVKLTPKGGVQ 313
Query: 1032 VNSRFQTVIPNIFAIGDCIHGPMLAHKAEDEGIVCVEGIAGDK 1074
V+ +T +PNI+AIGD ML A +EG V+ + G+K
Sbjct: 314 VDEFSRTNVPNIYAIGDITDRLMLTPVAINEGAALVDTVFGNK 356
Score = 83.0 bits (206), Expect = 2e-16
Identities = 20/79 (25%), Positives = 31/79 (39%), Gaps = 1/79 (1%)
Query: 452 GIEYKVGKFPFAANSRAKTNNDTDGFV-KVLGDKLTDKVLGVHIIGPAAGELINEAVLAM 510
+ V F + + FV K++ + VLGVH++G A E+I + +
Sbjct: 389 FEKVAVYMSSFTPLMHNISGSKYKKFVAKIVTNHSDGTVLGVHLLGDGAPEIIQAVGVCL 448
Query: 511 EYGASCEDVARTCHAHPTV 529
A D T HPT
Sbjct: 449 RLNAKISDFYNTIGVHPTS 467
Score = 68.4 bits (168), Expect = 6e-12
Identities = 28/106 (26%), Positives = 43/106 (40%), Gaps = 8/106 (7%)
Query: 509 AMEYGASCEDVARTCHAHPTVCVEKNDTLGGTCLNVGCIPSKALLNNSHYYHMAHSGDMK 568
A YG VA + LGGTC+NVGC+P K ++ + Y +
Sbjct: 27 ATLYGKR---VA-VVDVQTSHGPPFYAALGGTCVNVGCVPKKLMVTGAQYMDHLR--ESA 80
Query: 569 ARGIEVEG--VKLNLETMMGTKSAAVKALTGGIAHLFKSNKALKII 612
G E +G VK N + ++ K+ AV + +F + L
Sbjct: 81 GFGWEFDGSSVKANWKKLIAAKNEAVLDINKSYEGMFNDTEGLDFF 126
>4dna_A Probable glutathione reductase; structural genomics, protein
structure initiative, NEW YORK structural genomix
research consortium; HET: FAD; 2.80A {Sinorhizobium
meliloti}
Length = 463
Score = 179 bits (456), Expect = 1e-48
Identities = 56/267 (20%), Positives = 103/267 (38%), Gaps = 27/267 (10%)
Query: 825 GVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEV 884
+ + ++ K + L G + L+ ++ GPNTV ++ S + V
Sbjct: 76 ESRFDWAKLVAAKEQEIARLEGLYRKGLANAGAEILDTRAELAGPNTVKLLASG---KTV 132
Query: 885 KTKNILIATGSEVTPFPGIEVDEETIVSSTGALSLKK-----------------GSVWGR 927
+ I+IA G +P + E I +S A L +++
Sbjct: 133 TAERIVIAVGGHPSPHDALPGHELCI-TSNEAFDLPALPESILIAGGGYIAVEFANIFHG 191
Query: 928 LGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIEN 987
LG + T I I D ++ + + ++G++ + S D V
Sbjct: 192 LGVKTTLIYRGKEIL-SRFDQDMRRGLHAAMEEKGIRILCEDIIQSVSADADGRRVATT- 249
Query: 988 VKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIG 1047
K E+ D +++ +GR P T+ LGLE G+ +E G + V++ +T P I+A+G
Sbjct: 250 ----MKHGEIVADQVMLALGRMPNTNGLGLEAAGVRTNELGAIIVDAFSRTSTPGIYALG 305
Query: 1048 DCIHGPMLAHKAEDEGIVCVEGIAGDK 1074
D L A E + +E +
Sbjct: 306 DVTDRVQLTPVAIHEAMCFIETEYKNN 332
Score = 87.6 bits (218), Expect = 4e-18
Identities = 20/78 (25%), Positives = 35/78 (44%)
Query: 452 GIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAME 511
E +V + F + +K++ + KV+G HI+G AGE+ +++
Sbjct: 365 FQEIEVYRAEFRPMKATLSGRKEKTIMKLVVNAADRKVVGAHILGHDAGEMAQLLGISLR 424
Query: 512 YGASCEDVARTCHAHPTV 529
G + +D RT HPT
Sbjct: 425 AGCTKDDFDRTMAVHPTA 442
Score = 72.1 bits (178), Expect = 3e-13
Identities = 21/102 (20%), Positives = 32/102 (31%), Gaps = 15/102 (14%)
Query: 506 AVLAMEYGASCEDVARTCHAHPTVCVEKNDTLGGTCLNVGCIPSKALLNNSHYYHMAHSG 565
LA G VA E+ GGTC+ GC+P K + S +
Sbjct: 21 GRLAAALGKK---VA---------IAEE-FRYGGTCVIRGCVPKKLYVYASQFAEHFE-- 65
Query: 566 DMKARGIEVEGVKLNLETMMGTKSAAVKALTGGIAHLFKSNK 607
D G V + + ++ K + L G +
Sbjct: 66 DAAGFGWTVGESRFDWAKLVAAKEQEIARLEGLYRKGLANAG 107
>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity,
oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile}
PDB: 2rab_A*
Length = 463
Score = 170 bits (434), Expect = 1e-45
Identities = 55/269 (20%), Positives = 105/269 (39%), Gaps = 34/269 (12%)
Query: 825 GVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEV 884
G L+ ++ + + A+ + +T+++GH + +T+ V + +
Sbjct: 75 GGTLDWPRLVAGRDRYIGAINSFWDGYVERLGITRVDGHARFVDAHTIEV-----EGQRL 129
Query: 885 KTKNILIATGSE--VTPFPGIEVDEETIVSSTGALSLKK-----------------GSVW 925
+I+IATG V PG E+ ++S G +L++ +
Sbjct: 130 SADHIVIATGGRPIVPRLPGAEL----GITSDGFFALQQQPKRVAIIGAGYIGIELAGLL 185
Query: 926 GRLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTI 985
G+EVT + + + D ++ + QG++ L V + T+
Sbjct: 186 RSFGSEVTVVALEDRLL-FQFDPLLSATLAENMHAQGIETHLEFAVAALERDAQGTTLVA 244
Query: 986 ENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFA 1045
++ D+++ VGR P T +LGLE GIE G VP ++ T +P ++A
Sbjct: 245 QD-----GTRLEGFDSVIWAVGRAPNTRDLGLEAAGIEVQSNGMVPTDAYQNTNVPGVYA 299
Query: 1046 IGDCIHGPMLAHKAEDEGIVCVEGIAGDK 1074
+GD L A G E + +
Sbjct: 300 LGDITGRDQLTPVAIAAGRRLAERLFDGQ 328
Score = 83.7 bits (208), Expect = 7e-17
Identities = 20/78 (25%), Positives = 34/78 (43%)
Query: 452 GIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPAAGELINEAVLAME 511
G V + F A + +K++ +V+GVH+IG A E++ +A++
Sbjct: 363 GDVLTVYETSFTPMRYALNEHGPKTAMKLVCAGPEQRVVGVHVIGDGADEMLQGFAVAVK 422
Query: 512 YGASCEDVARTCHAHPTV 529
GA+ D T HP
Sbjct: 423 MGATKADFDNTVAIHPGS 440
Score = 70.2 bits (173), Expect = 1e-12
Identities = 24/102 (23%), Positives = 38/102 (37%), Gaps = 15/102 (14%)
Query: 506 AVLAMEYGASCEDVARTCHAHPTVCVEKNDTLGGTCLNVGCIPSKALLNNSHYYHMAHSG 565
A A +G VA +E LGGTC+NVGC+P K + SH
Sbjct: 20 AEKAAAFGKR---VA---------LIES-KALGGTCVNVGCVPKKVMWYASHLAEAVR-- 64
Query: 566 DMKARGIEVEGVKLNLETMMGTKSAAVKALTGGIAHLFKSNK 607
D G++ G L+ ++ + + A+ +
Sbjct: 65 DAPGFGVQASGGTLDWPRLVAGRDRYIGAINSFWDGYVERLG 106
>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase;
structural genomics, PSI-2, protein structur initiative;
2.30A {Desulfovibrio vulgaris}
Length = 472
Score = 92.2 bits (230), Expect = 1e-19
Identities = 45/207 (21%), Positives = 80/207 (38%), Gaps = 35/207 (16%)
Query: 871 TVTVI-KSDGSTEEVKTKNILIATGSE--VTPFPGIEV----------DEETIVSSTGAL 917
TV + G +K +++A GS+ P G+++ + E + + A
Sbjct: 98 TVEIENLRTGERRTLKYDKLVLALGSKANRPPVEGMDLAGVTPVTNLDEAEFVQHAISAG 157
Query: 918 SLKKGSVWG--------------RLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGM 963
+ K + G G + T +E + I +++ + L K +
Sbjct: 158 EVSKAVIVGGGFIGLEMAVSLADMWGIDTTVVELADQIMPGFTSKSLSQMLRHDLEKNDV 217
Query: 964 QFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIE 1023
G KV + I T K L D +++ G P T L + G+E
Sbjct: 218 VVHTGEKVVRLEGENGKVARVI------TDKRTLDADLVILAAGVSPNT-QL-ARDAGLE 269
Query: 1024 KDEKGRVPVNSRFQTVIPNIFAIGDCI 1050
D +G + V++R +T P+IFA GDC+
Sbjct: 270 LDPRGAIIVDTRMRTSDPDIFAGGDCV 296
Score = 33.7 bits (78), Expect = 0.40
Identities = 10/46 (21%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Query: 478 VKVLGDKLTDKVLGVHIIGPAAGEL---INEAVLAMEYGASCEDVA 520
++++ D+ T +VLG+ L IN + + ED++
Sbjct: 388 LQLVVDRPTRRVLGIQGFSTLGDALTARINAVATMLASKPTVEDIS 433
>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A
{Lactobacillus sanfranciscensis}
Length = 452
Score = 90.2 bits (225), Expect = 6e-19
Identities = 38/206 (18%), Positives = 67/206 (32%), Gaps = 37/206 (17%)
Query: 871 TVTVI-KSDGSTEEVKTKNILIATGSE--VTPFPGIEV----------DEETIVSSTGAL 917
T+ V + +++ TGS+ V P PGI+ D + +
Sbjct: 90 TIKVKDLITNEEKTEAYDKLIMTTGSKPTVPPIPGIDSSRVYLCKNYNDAKKLFEEAP-- 147
Query: 918 SLKKGSVWG-------------RLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQ 964
K ++ G V I+ + D E + G+
Sbjct: 148 KAKTITIIGSGYIGAELAEAYSNQNYNVNLIDGHERVLYKYFDKEFTDILAKDYEAHGVN 207
Query: 965 FKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEK 1024
LG+KV + D I +E+ D ++C+G RP N L + +
Sbjct: 208 LVLGSKVAAFEEVDDEIITKT------LDGKEIKSDIAILCIGFRP---NTELLKGKVAM 258
Query: 1025 DEKGRVPVNSRFQTVIPNIFAIGDCI 1050
+ G + + + +IFA GD
Sbjct: 259 LDNGAIITDEYMHSSNRDIFAAGDSA 284
Score = 32.5 bits (75), Expect = 0.73
Identities = 7/44 (15%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Query: 478 VKVLGDKLTDKVLGVHIIGPA-AGELINEAVLAMEYGASCEDVA 520
+ ++ D T +LG + + N + ++ + +D+A
Sbjct: 376 MSLVYDPKTRVILGGALSSMHDVSQSANVLSVCIQNKNTIDDLA 419
>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural
genomics, PSI-2, protein structure initiative; HET: FAD;
2.60A {Enterococcus faecalis}
Length = 452
Score = 89.8 bits (224), Expect = 7e-19
Identities = 41/221 (18%), Positives = 82/221 (37%), Gaps = 43/221 (19%)
Query: 855 NKVTQLNGHGKITGPNTVTVIKSDGSTEEVKTKNILIATGSE--VTPFPGIEV------- 905
+V ++ + + + +++ATG+ T G +
Sbjct: 79 REVVAMDVENQ-----LIAW-TRKEEQQWYSYDKLILATGASQFSTQIRGSQTEKLLKYK 132
Query: 906 ---DEETIVSSTGALSLKKGSVWG-------------RLGAEVTAIEFMNAIGGMGIDGE 949
V + + +V G ++ V E + + D E
Sbjct: 133 FLSGALAAVPL--LENSQTVAVIGAGPIGMEAIDFLVKMKKTVHVFESLENLLPKYFDKE 190
Query: 950 VAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRR 1009
+ + Q+ L KQ + F V G ++ + I + T ++E+SCD+ + +
Sbjct: 191 MVAEVQKSLEKQAVIFHFEETVLGIEETANGIVLE-------TSEQEISCDSGIFALNLH 243
Query: 1010 PYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCI 1050
P L + I+++ + V++ QT +PN+FAIGDCI
Sbjct: 244 P---QLAYLDKKIQRNLDQTIAVDAYLQTSVPNVFAIGDCI 281
Score = 33.2 bits (77), Expect = 0.53
Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 478 VKVLGDKLTDKVLGVHIIGPA-AGELINEAVLAMEYGASCEDVA 520
K++ DK+T +VLG + E IN L+++ G + D+
Sbjct: 371 GKLIYDKVTQRVLGAQLCSKNNCLEKINTLALSIQTGQTLTDLL 414
>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A
{Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A*
1f8w_A*
Length = 447
Score = 89.5 bits (223), Expect = 9e-19
Identities = 40/222 (18%), Positives = 70/222 (31%), Gaps = 41/222 (18%)
Query: 855 NKVTQLNGHGKITGPNTVTVI-KSDGSTEEVKTKNILIATGSE--VTPFPGIEV------ 905
++T + VTV G ++I+ G+ PG ++
Sbjct: 77 TEITAIQPKEH-----QVTVKDLVSGEERVENYDKLIISPGAVPFELDIPGKDLDNIYLM 131
Query: 906 ----DEETIVSSTGALSLKKGSVWG-------------RLGAEVTAIEFMNAIGGMGIDG 948
+ T + V G + G +VT I+ ++ G+ +D
Sbjct: 132 RGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDK 191
Query: 949 EVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGR 1008
E + + G V G V T K D ++V VG
Sbjct: 192 EFTDVLTEEMEANNITIATGETVERYEGDGRVQKVV-------TDKNAYDADLVVVAVGV 244
Query: 1009 RPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCI 1050
RP N + +E G + + +T P++FA+GD
Sbjct: 245 RP---NTAWLKGTLELHPNGLIKTDEYMRTSEPDVFAVGDAT 283
Score = 32.8 bits (76), Expect = 0.70
Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 478 VKVLGDKLTDKVLGVHIIGPA-AGELINEAVLAMEYGASCEDVA 520
K++ D T ++LG ++ A IN LA++ + ED+A
Sbjct: 375 FKLVYDPETTQILGAQLMSKADLTANINAISLAIQAKMTIEDLA 418
>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide
oxidoreductase class I, rhodan coenzyme A, flavin adenine
dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus
anthracis} PDB: 3icr_A* 3ict_A*
Length = 588
Score = 89.2 bits (222), Expect = 2e-18
Identities = 54/259 (20%), Positives = 100/259 (38%), Gaps = 57/259 (22%)
Query: 855 NKVTQLNGHGKITGPNTVTVIKSDGSTEEVKTKN---ILIATGSE--VTPFPGIEV---- 905
++V ++N K T+T+ + +T E + ++++ G++ V PGIE
Sbjct: 114 SEVVKINKEEK-----TITIK--NVTTNETYNEAYDVLILSPGAKPIVPSIPGIEEAKAL 166
Query: 906 -------DEETIVSSTGALSLKKGSVWG-------------RLGAEVTAIEFMNAIGGMG 945
D + I + + +V G G EVT +E N +
Sbjct: 167 FTLRNVPDTDRIKAYIDEKKPRHATVIGGGFIGVEMVENLRERGIEVTLVEMANQVMP-P 225
Query: 946 IDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVC 1005
ID E+A + ++ V ++G + + + D L++
Sbjct: 226 IDYEMAAYVHEHMKNHDVELVFEDGVDALEENGAVVRLK--------SGSVIQTDMLILA 277
Query: 1006 VGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCI-------HGPM---L 1055
+G +P + +L + G+ +G + VN +FQT P+I+AIGD I L
Sbjct: 278 IGVQPES-SL-AKGAGLALGVRGTIKVNEKFQTSDPHIYAIGDAIEVKDFVTETETMIPL 335
Query: 1056 AHKAEDEGIVCVEGIAGDK 1074
A A +G + + I G
Sbjct: 336 AWPANRQGRMLADIIHGHT 354
Score = 33.0 bits (76), Expect = 0.59
Identities = 7/45 (15%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 477 FVKVLGDKLTDKVLGVHIIGPA-AGELINEAVLAMEYGASCEDVA 520
+K++ +K + K+ G +G + ++ A++ + D+
Sbjct: 412 LIKLIFNKDSGKIYGAQTLGRDGVDKRMDVIATAIKANLTVLDLP 456
>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin
adenine dinucleotide, selenomethionine, F flavoprotein;
HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A*
3cgd_A* 3cge_A*
Length = 480
Score = 88.7 bits (221), Expect = 2e-18
Identities = 48/208 (23%), Positives = 82/208 (39%), Gaps = 40/208 (19%)
Query: 871 TVTVIKSDGSTEEVKTKN---ILIATGSE--VTPFPGIEV----------DEETIVSSTG 915
V T++V + +LIATG + + G ++ D E I+ +
Sbjct: 125 IVYAE--HTKTKDVFEFSYDRLLIATGVRPVMPEWEGRDLQGVHLLKTIPDAERILKTLE 182
Query: 916 ALSLKKGSVWG-------------RLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQG 962
++ ++ G LG +V IE + IG + DG++A+ + K
Sbjct: 183 TNKVEDVTIIGGGAIGLEMAETFVELGKKVRMIERNDHIGTI-YDGDMAEYIYKEADKHH 241
Query: 963 MQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGI 1022
++ V + V T K D +LV VG +P T + LE I
Sbjct: 242 IEILTNENVKAFKGNERVEAVE-------TDKGTYKADLVLVSVGVKPNT-DF-LEGTNI 292
Query: 1023 EKDEKGRVPVNSRFQTVIPNIFAIGDCI 1050
+ KG + VN+ QT + +++A GDC
Sbjct: 293 RTNHKGAIEVNAYMQTNVQDVYAAGDCA 320
Score = 32.5 bits (75), Expect = 0.74
Identities = 11/44 (25%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 478 VKVLGDKLTDKVLGVHIIGPA-AGELINEAVLAMEYGASCEDVA 520
+K+L T ++LG +IG + I+ +A+ S D+
Sbjct: 412 LKLLYRSDTKQLLGGQVIGEEGVDKRIDVIAMALFNKMSIHDLE 455
>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide
oxidoreductase, C(4A)-peroxyflavin, crystallography,
conformational dynamics; HET: FAD; 2.00A {Streptococcus
pyogenes} PDB: 2bcp_A* 2bc1_A*
Length = 490
Score = 88.4 bits (220), Expect = 3e-18
Identities = 51/232 (21%), Positives = 87/232 (37%), Gaps = 52/232 (22%)
Query: 855 NKVTQLNGHGKITGPNTVTVIKSDGSTEEVKTKNILIATGSE--VTPFPGIEV------- 905
+ V ++ K TVT + + E K ++ ATGS+ + P G E+
Sbjct: 113 SPVQSIDYDAK-----TVTALVDGKNHVETYDK-LIFATGSQPILPPIKGAEIKEGSLEF 166
Query: 906 --------------DEETIVSSTGALSLKKGSVWG-------------RLGAEVTAIEFM 938
+ +++ +K+ +V G R G EV I+ +
Sbjct: 167 EATLENLQFVKLYQNSADVIAKLENKDIKRVAVVGAGYIGVELAEAFQRKGKEVVLIDVV 226
Query: 939 NAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELS 998
+ D ++ + + + G+Q G V + +G + T K E
Sbjct: 227 DTCLAGYYDRDLTDLMAKNMEEHGIQLAFGETVKEVAGNGKVEKII-------TDKNEYD 279
Query: 999 CDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCI 1050
D +++ VG RP N L I+ G VN R +T IP ++AIGDC
Sbjct: 280 VDMVILAVGFRP---NTTLGNGKIDLFRNGAFLVNKRQETSIPGVYAIGDCA 328
Score = 33.3 bits (77), Expect = 0.45
Identities = 14/72 (19%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
Query: 452 GIEYKVGKFPFAANSRAK--TNNDTDGFVKVLGDKLTDKVLGVHIIGPA-AGELINEAVL 508
G + V ++ N + + + + +K++ DK + ++LG + I+ L
Sbjct: 395 GFDAAVTEY--TDNQKPEFIEHGNFPVTIKIVYDKDSRRILGAQMAAREDVSMGIHMFSL 452
Query: 509 AMEYGASCEDVA 520
A++ G + E +A
Sbjct: 453 AIQEGVTIEKLA 464
>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase,
structural genomics structure initiative; 2.75A
{Pyrococcus horikoshii}
Length = 449
Score = 87.9 bits (219), Expect = 3e-18
Identities = 36/207 (17%), Positives = 65/207 (31%), Gaps = 36/207 (17%)
Query: 869 PNTVTVIKSDGSTEEVKTKNILIATGSE--VTPFPGIEV----------DEETIVSSTGA 916
V V ++ G ++ A G+ V G+ + D I
Sbjct: 87 TGYVRVRENGGEKSYEWDY-LVFANGASPQVPAIEGVNLKGVFTADLPPDALAIREYMEK 145
Query: 917 LSLKKGSVWG-------------RLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGM 963
++ + G G VT I + D EV + L K+ +
Sbjct: 146 YKVENVVIIGGGYIGIEMAEAFAAQGKNVTMIVRGERVLRRSFDKEVTDILEEKL-KKHV 204
Query: 964 QFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIE 1023
+L V T E + +++ G +P L +++G+
Sbjct: 205 NLRLQEITMKIEGEERVEKVV-------TDAGEYKAELVILATGIKPNI-EL-AKQLGVR 255
Query: 1024 KDEKGRVPVNSRFQTVIPNIFAIGDCI 1050
E G + N + QT + N++A GD
Sbjct: 256 IGETGAIWTNEKMQTSVENVYAAGDVA 282
Score = 35.2 bits (82), Expect = 0.13
Identities = 11/43 (25%), Positives = 22/43 (51%)
Query: 478 VKVLGDKLTDKVLGVHIIGPAAGELINEAVLAMEYGASCEDVA 520
+K + D T+++LGV ++G I+ A + G + +D
Sbjct: 374 LKGVVDNETNRLLGVQVVGSDILPRIDTAAAMLMAGFTTKDAF 416
>1yqz_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.54A
{Staphylococcus aureus}
Length = 438
Score = 85.2 bits (212), Expect = 2e-17
Identities = 45/204 (22%), Positives = 80/204 (39%), Gaps = 38/204 (18%)
Query: 871 TVTVI-KSDGSTEEVKTKNILIATGSEVTPFPGIE----------VDEETIVSSTGALSL 919
TV+V+ + E ++++ G+ G E D + I A +
Sbjct: 90 TVSVLNRKTNEQFEESYDKLILSPGA-SANSLGFESDITFTLRNLEDTDAIDQFIKANQV 148
Query: 920 KKGSVWG-------------RLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFK 966
K V G G T I + I + +D ++ + L K+ + ++
Sbjct: 149 DKVLVVGAGYVSLEVLENLYERGLHPTLIHRSDKINKL-MDADMNQPILDELDKREIPYR 207
Query: 967 LGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDE 1026
L ++ + G+ IT + D ++ VG P + +E I+ D
Sbjct: 208 LNEEINAIN--GNEITFK--------SGKVEHYDMIIEGVGTHPNS-KF-IESSNIKLDR 255
Query: 1027 KGRVPVNSRFQTVIPNIFAIGDCI 1050
KG +PVN +F+T +PNI+AIGD
Sbjct: 256 KGFIPVNDKFETNVPNIYAIGDIA 279
Score = 32.5 bits (75), Expect = 0.82
Identities = 8/45 (17%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 477 FVKVLGDKLTDKVLGVHIIGPA-AGELINEAVLAMEYGASCEDVA 520
++V D ++L +G A + I+ +AM + +++
Sbjct: 369 HLRVYYDTSNRQILRAAAVGKEGADKRIDVLSMAMMNQLTVDELT 413
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 83.7 bits (206), Expect = 2e-16
Identities = 90/636 (14%), Positives = 183/636 (28%), Gaps = 171/636 (26%)
Query: 2 KEE--ETMKNGD-IDRAIRMFEKAETHQQHVPRMLLENTDKLEKYIIQSKDPVLLKW-WA 57
KEE + + D + +R+F + Q+ + + +E ++ Y K+ +
Sbjct: 48 KEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRIN-Y----------KFLMS 96
Query: 58 QYIESTEDMDLAMKYYEEARDYL----------SMVRVLCFLQDFSRAAELANA------ 101
+ + Y E RD L ++ R+ +L+ EL A
Sbjct: 97 PIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLID 156
Query: 102 ----SGDTAAAYHLARQYENSGQFDEAIHFYSVAGSCGNAVRLCKEQALDDQLWNLALSA 157
SG T A + Y+ + D I + ++ +C + + + L L
Sbjct: 157 GVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNL-KNC------NSPETVLEMLQKLLYQI 209
Query: 158 GPSEQIEA---ATYLETIEPDKAVLLYHKAGALHK-ALDLAFKLTLSNSGLVFQ---IKA 210
P+ + + I +A L ++ L L L N V A
Sbjct: 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL-----LVLLN---VQNAKAWNA 261
Query: 211 M--KC--LLKSGDTNKIIFFAGVSRMKEIYV--------------MAANYLQSSDWKSQP 252
C LL + + F + I + + YL + P
Sbjct: 262 FNLSCKILLTTRFKQ-VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP-QDLP 319
Query: 253 ELLKSIISFYSKGKAPHLLANFYVSCAQVEIDEFGNYEKGLGALNEAKRCLLKHNDSMYE 312
+ + P L+ S + + + N++ +N D +
Sbjct: 320 REVLTT--------NPRRLSIIAESI-RDGLATWDNWKH----VN---------CDKLTT 357
Query: 313 TLKSSVVEKLAEVEIDEFGNYEKGLGALNE-----AKR-CLLKHNDSMYETLKSSVVEKI 366
++SS + L E + +++ L L+ + + S V +
Sbjct: 358 IIESS-LNVLEPAEYRK--MFDR-LSVFPPSAHIPTILLSLI------WFDVIKSDVMVV 407
Query: 367 AE--VDKYLEMKRNQSFRSSNTDIIL----PVEKWTLLSL-ARVLEGIEYKVGKFPFAAN 419
L K+ + S I L +E +L +++ Y + K
Sbjct: 408 VNKLHKYSLVEKQPKESTISIPSIYLELKVKLEN--EYALHRSIVD--HYNIPK------ 457
Query: 420 SRAKTNNDTDGFVKVLGDKLTDKVLGVHIIGPGIEYKVGKFP-------FAANSRAKTNN 472
D+D + D+ +G H+ ++ F F K +
Sbjct: 458 -----TFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFL---EQKIRH 509
Query: 473 DTDGFVKV--LGDKLTD-KVLGVHIIGPAAGELINEAVLAMEYGASCEDVARTCHAHPTV 529
D+ + + + L K +I N+ +Y +
Sbjct: 510 DSTAWNASGSILNTLQQLKFYKPYIC-------DNDP----KYERLVNAILDFLPKIEEN 558
Query: 530 CVEKNDTLGGTCLNVGCIPSKALLN-NSHYYHMAHS 564
+ T + AL+ + + AH
Sbjct: 559 LICSKYT---------DLLRIALMAEDEAIFEEAHK 585
Score = 61.0 bits (147), Expect = 2e-09
Identities = 107/827 (12%), Positives = 211/827 (25%), Gaps = 331/827 (40%)
Query: 192 DLAFKLTLSNSGLVFQIKAMKCLLKSGDTNK---IIFFAGVSRMKEIY------VMAANY 242
+ K + + + ++ S D +F+ +S+ +E+ V+ NY
Sbjct: 32 NFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINY 91
Query: 243 LQSSDWKSQPELLKSIISFYSKGKAPHLLANFYVSCAQV---EIDEFGNY-----EKGLG 294
+ L S I ++ + P ++ Y+ + F Y +
Sbjct: 92 ----KF------LMSPIK--TEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQP--- 136
Query: 295 ALNEAKRCLLKHNDSMYETL-------KSS-VVEKLAEVEID---EFGNYEKGLGALNEA 343
+ ++ LL+ + + K+ ++ ++ +F + L N
Sbjct: 137 -YLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSP 195
Query: 344 KRCLLKHNDSMYETLKSSVVEKIAEVDKYLEMKRNQSFRSSNTD-IILPVEKWTLLSLAR 402
+ L M + L ++ N + RS ++ I L + L R
Sbjct: 196 ETVLE-----MLQKL-------------LYQIDPNWTSRSDHSSNIKLRIH-SIQAELRR 236
Query: 403 VLEGIEYKVGKFPFAANS--------RAKTNNDTDGFVKVL---GDK-LTDKVLGVHIIG 450
+L+ Y+ N AK N + K+L K +TD +
Sbjct: 237 LLKSKPYE--------NCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTH 288
Query: 451 PGIEYKVGKFPFAANSRAKTNNDTDG-FVKVLGDKLTDKVLGVHIIGPAAGELINEAVLA 509
+++ T ++ +K L + D L P N L+
Sbjct: 289 ISLDHHSMTL---------TPDEVKSLLLKYLDCRPQD--L------PREVLTTNPRRLS 331
Query: 510 MEYGASCEDVARTCHAHPTVCVEKNDTLGGTCLNVGCIPSKALLNNSHYYHMAHSGDMKA 569
+ S D A +N +
Sbjct: 332 I-IAESIRD-------GL-----------------------ATWDNWKHV---------- 350
Query: 570 RGIEVEGVKLNLETMMGTKSAAVKALT-GGIAHLFKSNKALKI------ITKQIILILII 622
N + + +++ L +F L + I ++ ++
Sbjct: 351 ----------NCDKLTTIIESSLNVLEPAEYRKMFDR---LSVFPPSAHIPTILLSLI-- 395
Query: 623 YRVLLKWWAQYIESTEDMDLAMKYYEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAA 682
W+ + ++ M + +L S
Sbjct: 396 ------WF--DVIKSDVMVVV--------------------------NKLHKYS------ 415
Query: 683 YHLARQYENSGQFDEAIHFYSVAGSCGNAVRLCGQLDAVESIASELNVQSDQDLILKCAS 742
L + +I SI EL V+ + +
Sbjct: 416 --LVEKQPKESTI--SIP----------------------SIYLELKVKLENE------- 442
Query: 743 YFARREHHDRAVQMYAIARRYDQALSLIQTKHVPLSEELADLLVPPESDDQRQVVLNTLG 802
H V Y I + +D D L+PP D Q + +G
Sbjct: 443 ----YALHRSIVDHYNIPKTFDS-----------------DDLIPPYLD---QYFYSHIG 478
Query: 803 NCAAVQANYHLAT-------KLFTQAGDKGVKLNLETMMGTK---SAAVKALTGGIAHLF 852
+HL LF V L+ + K + +G I +
Sbjct: 479 --------HHLKNIEHPERMTLFRM-----VFLDFR-FLEQKIRHDSTAWNASGSILNTL 524
Query: 853 KSNKVTQLNGHGK-ITGPNTVTVIKSDGSTEE-VKT-KNILIATGSEVTPFPGIEVDEET 909
QL + I +D E V + L + I
Sbjct: 525 -----QQLKFYKPYIC--------DNDPKYERLVNAILDFLPKIEENL-----ICSKYTD 566
Query: 910 IVSSTGALSLKKGSVWGRLGAEVTAIEFMNAIGGMGIDGEVAKQFQR 956
++ AL + +++ E KQ QR
Sbjct: 567 LLRI--ALMAEDEAIF----------------------EEAHKQVQR 589
Score = 56.4 bits (135), Expect = 5e-08
Identities = 76/634 (11%), Positives = 186/634 (29%), Gaps = 164/634 (25%)
Query: 235 IYVMAANYLQSSDWKSQPELLKSIISFYSKGKAPHLLAN----------FYVSCAQVE-- 282
+ V ++ + D K ++ KSI+ SK + H++ + F+ ++ E
Sbjct: 22 LSVFEDAFVDNFDCKDVQDMPKSIL---SKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEM 78
Query: 283 IDEF------GNYEKGLGALNEAKRCLLKHNDSMYETLKSSVVEKLAEVEIDEFGNY--- 333
+ +F NY+ + + +R SM + ++L + F Y
Sbjct: 79 VQKFVEEVLRINYKFLMSPIKTEQR-----QPSMMTRMYIEQRDRLYN-DNQVFAKYNVS 132
Query: 334 --EKGLGALNEAKRCLLKHNDSMYETL-------KSSVVEKIAEVDKYLEMKRNQSFR-- 382
+ + ++ LL+ + + K+ V +V +++ F+
Sbjct: 133 RLQP----YLKLRQALLELRPAKNVLIDGVLGSGKTWVA---LDVCLSYKVQCKMDFKIF 185
Query: 383 -------SSNTDIILPVEKWTLLSLARVLEGIEYKVGKFPFAANSRAKTNNDTDGFVKVL 435
+S ++ L L ++ +N + + ++ ++L
Sbjct: 186 WLNLKNCNSPETVLEM-----LQKLLYQIDPNWTSRSDHS--SNIKLRIHSIQAELRRLL 238
Query: 436 GDKLTDKVLGV--HIIGPGIEYKVGKFPFAANSRAK---TNNDTDGFVKVLGDKLTDKVL 490
K + L V ++ F N K T + T L
Sbjct: 239 KSKPYENCLLVLLNVQNAKA---WNAF----NLSCKILLTTRFKQVTDFLSAATTTHISL 291
Query: 491 GVHIIGPAAGELINEAVLAMEYGASCEDVAR-TCHAHPTVCVEKNDTLGGTCLNVGCIPS 549
H + E+ +++L +D+ R +P + I
Sbjct: 292 DHHSMTLTPDEV--KSLLLKYLDCRPQDLPREVLTTNP--------------RRLSIIA- 334
Query: 550 KALLNNSHYYHMAHSGDMKARGIEVEGVKLNLETMMGTKSAAVKALT-GGIAHLFKSNKA 608
+ D A + +N + + +++ L +F
Sbjct: 335 -ESIR-----------DGLATWDNWK--HVNCDKLTTIIESSLNVLEPAEYRKMFDR--- 377
Query: 609 LKI------ITKQIILIL-----------II-----YRVLLKWWAQYIESTEDMDLAMKY 646
L + I ++ ++ ++ Y ++ K + + + ++
Sbjct: 378 LSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKES--TISIPSIYLEL 435
Query: 647 YEEARDYLSMVRVLCFLQDFSRAAELANASGDTA-------AAYHL--ARQYENSGQF-- 695
+ + ++ R + + + + + +HL E F
Sbjct: 436 KVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRM 495
Query: 696 ---D----EA--IHFYSVAGSCGNAVRLCGQLDAVES-IAS-----ELNVQSDQDLILKC 740
D E H + + G+ + QL + I E V + D + K
Sbjct: 496 VFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKI 555
Query: 741 ASYFARREHHDRAVQ---MYAIARRYDQALSLIQ 771
++ D ++ M +++A +Q
Sbjct: 556 EENLICSKYTD-LLRIALMAEDEAIFEEAHKQVQ 588
Score = 36.8 bits (84), Expect = 0.044
Identities = 40/298 (13%), Positives = 92/298 (30%), Gaps = 94/298 (31%)
Query: 749 HHDRAVQMYAIARRYDQALSLIQ---------------TKHVPLSEELADLLVPPESDDQ 793
HH + +Y LS+ + K + EE+ +++ ++
Sbjct: 4 HHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSG 63
Query: 794 RQVVLNTL---GNCA-------AVQANYH-LATKLFTQAGDKGVKLNLETMMGTKSAAVK 842
+ TL ++ NY L + + T+
Sbjct: 64 TLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQP------------------ 105
Query: 843 ALTGGIAHLFKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEVKTKNILIATGSEVTPFPG 902
+ ++ + +L ++ V+ ++ +K + L E+ P
Sbjct: 106 ---SMMTRMYIE-QRDRLYNDNQVFAKYNVSRLQ-----PYLKLRQAL----LELRPAKN 152
Query: 903 IEVDEETIVSSTGALSLKKGSVWGR--LGAEV-------TAIEF----MNAIGGMGIDGE 949
+ +D G GS G+ + +V ++F +N +
Sbjct: 153 VLID--------G----VLGS--GKTWVALDVCLSYKVQCKMDFKIFWLN-LKNCNSPET 197
Query: 950 VAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTK---KEELSCDALLV 1004
V + Q++L +++ T S NI + I +++ + K + + LLV
Sbjct: 198 VLEMLQKLL------YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV 249
>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA,
persulfide reductase, rhodanese; HET: COA FAD; 1.99A
{Shewanella loihica} PDB: 3nta_A* 3nt6_A*
Length = 565
Score = 82.6 bits (205), Expect = 2e-16
Identities = 53/233 (22%), Positives = 94/233 (40%), Gaps = 47/233 (20%)
Query: 857 VTQLNGHGKITGPNTVTVI-KSDGSTEEVKTKNILIATGSE--VTPFPGIEV-------- 905
V ++ K VTV DGS + +L++ G+ V P PG++
Sbjct: 81 VVAIDRAAK-----LVTVRRLLDGSEYQESYDTLLLSPGAAPIVPPIPGVDNPLTHSLRN 135
Query: 906 --DEETIVSSTGALSLKKGSVWG-------------RLGAEVTAIEFMNAIGGMGIDGEV 950
D + I+ + +++ +V G LG + T +E + + +D E+
Sbjct: 136 IPDMDRILQTIQMNNVEHATVVGGGFIGLEMMESLHHLGIKTTLLELADQVMT-PVDREM 194
Query: 951 AKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDP-------------TKKEEL 997
A + + QG+ +LGT ++ S + +D + E L
Sbjct: 195 AGFAHQAIRDQGVDLRLGTALSEVSYQVQTHVASDAAGEDTAHQHIKGHLSLTLSNGELL 254
Query: 998 SCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCI 1050
D L++ +G RP T L + G+ E G + VN+ QT P I+A+GD +
Sbjct: 255 ETDLLIMAIGVRPET-QL-ARDAGLAIGELGGIKVNAMMQTSDPAIYAVGDAV 305
Score = 33.0 bits (76), Expect = 0.61
Identities = 9/45 (20%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Query: 477 FVKVLGDKLTDKVLGVHIIGPA-AGELINEAVLAMEYGASCEDVA 520
K+L D + + G +G + I+ +A G + E +
Sbjct: 396 SFKLLFDPVKGTIFGAQAVGKDGIDKRIDVMAVAQRAGMTVEQLQ 440
>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural
genomics, secsg, hyperthermoph protein structure
initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus}
SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 367
Score = 79.1 bits (196), Expect = 1e-15
Identities = 41/215 (19%), Positives = 80/215 (37%), Gaps = 52/215 (24%)
Query: 890 LIATGSE--VTPFPGIE--------VDEETIVSSTGALSLKKGSVWG------------- 926
++ATG+ G E D + I S + + + G
Sbjct: 106 VLATGARAREPQIKGKEYLLTLRTIFDADRIKES--IENSGEAIIIGGGFIGLELAGNLA 163
Query: 927 RLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIE 986
G V I +G+D E++ + +L + G++F L +++ A++ G
Sbjct: 164 EAGYHVKLIHRGAMF--LGLDEELSNMIKDMLEETGVKFFLNSELLEANEEG-------- 213
Query: 987 NVKDPTKKEELSCDALLVCVGRRPYTHNLGL-EEIGIEKDEKGRVPVNSRFQTVIPNIFA 1045
+ + + + +G P N+ L GI G + ++ F+T +++A
Sbjct: 214 VLTN---SGFIEGKVKICAIGIVP---NVDLARRSGIHTGR-G-ILIDDNFRTSAKDVYA 265
Query: 1046 IGDC------IHGPMLAHKAEDEGIVCVEGIAGDK 1074
IGDC I G A A ++ V + + G+
Sbjct: 266 IGDCAEYSGIIAG--TAKAAMEQARVLADILKGEP 298
>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain);
FAD-binding protein, GR-fold, oxidoreductase; HET: FAD;
2.10A {Clostridium acetobutylicum}
Length = 385
Score = 75.7 bits (187), Expect = 2e-14
Identities = 40/253 (15%), Positives = 79/253 (31%), Gaps = 59/253 (23%)
Query: 852 FKSNKVTQLNGHGKITGPNTV--TVIKSDGSTEEVKTKNILIATGSE--VTPFPGIE--- 904
++ N + + T + V G E++K + ++IA+GS P +
Sbjct: 72 YEKNNIKVITSE-FATSIDPNNKLVTLKSG--EKIKYEKLIIASGSIANKIKVPHADEIF 128
Query: 905 -----VDEETIVSSTGALSLKKGSVWG-------------RLGAEVTAIEFMNAIGGMGI 946
D I + K + G G + + +
Sbjct: 129 SLYSYDDALKIKDE--CKNKGKAFIIGGGILGIELAQAIIDSGTPASIGIILEYPLERQL 186
Query: 947 DGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCV 1006
D + + L + G++ + + G + + ++ V
Sbjct: 187 DRDGGLFLKDKLDRLGIKIYTNSNFE---EMG----------------DLIRSSCVITAV 227
Query: 1007 GRRPYTHNLGL-EEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDC--IHGPMLAH--KAED 1061
G +P NL ++ I +G + VN +T I +I+A GD +G A
Sbjct: 228 GVKP---NLDFIKDTEIASK-RG-ILVNDHMETSIKDIYACGDVAEFYGKNPGLINIANK 282
Query: 1062 EGIVCVEGIAGDK 1074
+G V G+
Sbjct: 283 QGEVAGLNACGED 295
>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase,
rubredoxin reductas NAD, flavoprotein, oxidoreductase;
HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*
Length = 384
Score = 73.8 bits (182), Expect = 6e-14
Identities = 37/186 (19%), Positives = 67/186 (36%), Gaps = 39/186 (20%)
Query: 890 LIATGSE--VTPFPGIEV----------DEETIVSSTGALSLKKGSVWG----------- 926
++A G+E P G D + A ++ + G
Sbjct: 106 VLAWGAEPIRVPVEGDAQDALYPINDLEDYARFRQA--AAGKRRVLLLGAGLIGCEFAND 163
Query: 927 --RLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVT 984
G ++ + + + AK Q L G++F LG + K+G+ +
Sbjct: 164 LSSGGYQLDVVAPCEQVMPGLLHPAAAKAVQAGLEGLGVRFHLGPVLASLKKAGEGLEAH 223
Query: 985 IENVKDPTKKEELSCDALLVCVGRRPYTHNLGL-EEIGIEKDEKGRVPVNSRFQTVIPNI 1043
+ + E + CD ++ VG RP L G+ + G + V+ +T NI
Sbjct: 224 LSD------GEVIPCDLVVSAVGLRP---RTELAFAAGLAVNR-G-IVVDRSLRTSHANI 272
Query: 1044 FAIGDC 1049
+A+GDC
Sbjct: 273 YALGDC 278
>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural
genomics, NPPSFA, project on protein structural and
functional analyses; HET: FAD; 2.10A {Thermus
thermophilus}
Length = 335
Score = 71.1 bits (175), Expect = 4e-13
Identities = 33/202 (16%), Positives = 63/202 (31%), Gaps = 34/202 (16%)
Query: 874 VIKSDGSTEEVKTKNILIATGSEVT-----PFPGIEVDEET----IVSSTGALSLKKGSV 924
+ + K ++IA G PG E V S K+ +
Sbjct: 99 KVTTSQGNA-YTAKAVIIAAGVGAFEPRRIGAPGEREFEGRGVYYAVKSKAEFQGKRVLI 157
Query: 925 WG-------------RLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQG-MQFKLGTK 970
G +T I + + ++G ++ +
Sbjct: 158 VGGGDSAVDWALNLLDTARRITLIHRRPQFRAHEASVKELMK----AHEEGRLEVLTPYE 213
Query: 971 VTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLG-LEEIGIEKDEKGR 1029
+ + + + ++ L DA+L+ G Y LG L G+ EK +
Sbjct: 214 LRRVEGDERVRWAVVFHNQT-QEELALEVDAVLILAG---YITKLGPLANWGLA-LEKNK 268
Query: 1030 VPVNSRFQTVIPNIFAIGDCIH 1051
+ V++ T IP ++A GD +
Sbjct: 269 IKVDTTMATSIPGVYACGDIVT 290
>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET:
FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
PDB: 3gd3_A* 3gd4_A* 1gv4_A*
Length = 493
Score = 70.2 bits (172), Expect = 2e-12
Identities = 46/242 (19%), Positives = 79/242 (32%), Gaps = 54/242 (22%)
Query: 873 TVIKSDGSTEEVKTKNILIATGSE-----VTPFPGIEVDEETIV--SSTGALSLKKGSVW 925
V +DGS + + LIATG G EV T + SL+K S
Sbjct: 122 MVKLNDGSQ--ITYEKCLIATGGTPRSLSAIDRAGAEVKSRTTLFRKIGDFRSLEKISRE 179
Query: 926 GR------------------------LGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQ 961
+ LG EV + G + ++ + ++
Sbjct: 180 VKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRRE 239
Query: 962 GMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGL-EEI 1020
G++ V S + + +++ ++ D ++ VG P N+ L +
Sbjct: 240 GVKVMPNAIVQSVGVSSGKLLIKLKD------GRKVETDHIVAAVGLEP---NVELAKTG 290
Query: 1021 GIEKDEKGR-VPVNSRFQTVIPNIFAIGDC--IHGPMLAHK-------AEDEGIVCVEGI 1070
G+E D VN+ Q NI+ GD + L + A G + E +
Sbjct: 291 GLEIDSDFGGFRVNAELQAR-SNIWVAGDAACFYDIKLGRRRVEHHDHAVVSGRLAGENM 349
Query: 1071 AG 1072
G
Sbjct: 350 TG 351
>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH,
flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus
subtilis} PDB: 3lzx_A*
Length = 332
Score = 66.8 bits (164), Expect = 8e-12
Identities = 24/104 (23%), Positives = 38/104 (36%), Gaps = 6/104 (5%)
Query: 951 AKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRP 1010
+ L + + +E VK +KE L D L+V G
Sbjct: 192 HEHSVENLHASKVNVLTPFVPAELIGEDKIEQLVLEEVKG-DRKEILEIDDLIVNYG--- 247
Query: 1011 YTHNLG-LEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGP 1053
+ +LG ++ G++ EK + V S +T I FA GD
Sbjct: 248 FVSSLGPIKNWGLD-IEKNSIVVKSTMETNIEGFFAAGDICTYE 290
>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase;
HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5
c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*
Length = 431
Score = 67.2 bits (165), Expect = 1e-11
Identities = 30/124 (24%), Positives = 51/124 (41%), Gaps = 9/124 (7%)
Query: 927 RLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIE 986
+ VT ++ + V+ ++ + + G+ + GT+V G S D VT
Sbjct: 170 KANMHVTLLDTAARVLERVTAPPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAV 229
Query: 987 NVKDPTKKEELSCDALLVCVGRRPYTHNLGL-EEIGIEKDEKGRVPVNSRFQTVIPNIFA 1045
+D L D ++ +G P N L G++ D + +N QT P I A
Sbjct: 230 LCED---GTRLPADLVIAGIGLIP---NCELASAAGLQVD--NGIVINEHMQTSDPLIMA 281
Query: 1046 IGDC 1049
+GDC
Sbjct: 282 VGDC 285
>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD
binding protein, NADH binding protein, aromatic hydrocar
catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida}
Length = 410
Score = 65.7 bits (161), Expect = 3e-11
Identities = 32/124 (25%), Positives = 52/124 (41%), Gaps = 12/124 (9%)
Query: 927 RLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIE 986
+LG VT +E + + + + + +L + G+Q +LGT V G S G V
Sbjct: 164 KLGLSVTILEAGDELLVRVLGRRIGAWLRGLLTELGVQVELGTGVVGFSGEGQLEQVMAS 223
Query: 987 NVKDPTKKEELSCDALLVCVGRRPYTHNLGL-EEIGIEKDEKGRVPVNSRFQTVIPNIFA 1045
+ D+ L+CVG P L + G+ D V V+ T+ +FA
Sbjct: 224 DG------RSFVADSALICVGAEP---ADQLARQAGLACD--RGVIVDHCGATLAKGVFA 272
Query: 1046 IGDC 1049
+GD
Sbjct: 273 VGDV 276
>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F
flavoprotein, oxidoreductase; HET: FAD; 2.20A
{Rhodopseudomonas palustris}
Length = 404
Score = 64.9 bits (159), Expect = 5e-11
Identities = 31/125 (24%), Positives = 52/125 (41%), Gaps = 13/125 (10%)
Query: 927 RLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNIT-VTI 985
G EV +E + + E++ F G++ G + T + GD +T V +
Sbjct: 163 AKGLEVDVVELAPRVMARVVTPEISSYFHDRHSGAGIRMHYGVRATEIAAEGDRVTGVVL 222
Query: 986 ENVKDPTKKEELSCDALLVCVGRRPYTHNLGL-EEIGIEKDEKGRVPVNSRFQTVIPNIF 1044
+ L CD ++V VG P N+ + G+ + V+ + T P+I
Sbjct: 223 SD------GNTLPCDLVVVGVGVIP---NVEIAAAAGLPTA--AGIIVDQQLLTSDPHIS 271
Query: 1045 AIGDC 1049
AIGDC
Sbjct: 272 AIGDC 276
>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase;
glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A
{Novosphingobium aromaticivorans}
Length = 415
Score = 64.5 bits (158), Expect = 7e-11
Identities = 24/125 (19%), Positives = 50/125 (40%), Gaps = 13/125 (10%)
Query: 927 RLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNIT-VTI 985
+ G VT +E + + +++ +Q G+ + G + G +T V +
Sbjct: 173 KFGVNVTLLEALPRVLARVAGEALSEFYQAEHRAHGVDLRTGAAMDCIEGDGTKVTGVRM 232
Query: 986 ENVKDPTKKEELSCDALLVCVGRRPYTHNLGL-EEIGIEKDEKGRVPVNSRFQTVIPNIF 1044
++ + D ++V +G P +G G V V+ +T + +++
Sbjct: 233 QD------GSVIPADIVIVGIGIVP---CVGALISAGASGG--NGVDVDEFCRTSLTDVY 281
Query: 1045 AIGDC 1049
AIGDC
Sbjct: 282 AIGDC 286
>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A
{Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A*
2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*
Length = 408
Score = 63.0 bits (154), Expect = 2e-10
Identities = 36/201 (17%), Positives = 71/201 (35%), Gaps = 41/201 (20%)
Query: 873 TVIKSDGSTEEVKTKNILIATGSEVTPFPGIEVDEETIV---SSTGALSLKKGSVWGR-- 927
TV SDG T + +++ATG+ P ++ + + A ++ G
Sbjct: 91 TVALSDGRT--LPYGTLVLATGAAPRALPTLQGATMPVHTLRTLEDARRIQAGLRPQSRL 148
Query: 928 ------------------LGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGT 969
G V+ +E + +A R QG+ +
Sbjct: 149 LIVGGGVIGLELAATARTAGVHVSLVETQPRLMSRAAPATLADFVARYHAAQGVDLRFER 208
Query: 970 KVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGL-EEIGIEKDEKG 1028
VTG+ V +++ ++ D ++V +G N L G+ D
Sbjct: 209 SVTGSVDGV----VLLDD------GTRIAADMVVVGIGVLA---NDALARAAGLACD--D 253
Query: 1029 RVPVNSRFQTVIPNIFAIGDC 1049
+ V++ +T P+++A+GD
Sbjct: 254 GIFVDAYGRTTCPDVYALGDV 274
>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD,
flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}
Length = 360
Score = 62.7 bits (153), Expect = 2e-10
Identities = 40/196 (20%), Positives = 71/196 (36%), Gaps = 32/196 (16%)
Query: 882 EEVKTKNILIATGS---EVTPFPGIEVDEET-------IVSSTGALSLKKGSVWG----- 926
+++ +LIA G E P + + V S K+ + G
Sbjct: 116 NVYRSRAVLIAAGLGAFEPRKLPQLGNIDHLTGSSVYYAVKSVEDFKGKRVVIVGGGDSA 175
Query: 927 --------RLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSG 978
+ A VT + + G G + A + +R + L T+V +S
Sbjct: 176 LDWTVGLIKNAASVTLVHRGHEFQGHG---KTAHEVERARANGTIDVYLETEVASIEESN 232
Query: 979 DNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLG-LEEIGIEKDEKGRVPVNSRFQ 1037
+T D K + D LL+ +G + NLG L +E + + V+S +
Sbjct: 233 GVLTRVHLRSSD-GSKWTVEADRLLILIG---FKSNLGPLARWDLE-LYENALVVDSHMK 287
Query: 1038 TVIPNIFAIGDCIHGP 1053
T + ++A GD + P
Sbjct: 288 TSVDGLYAAGDIAYYP 303
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 63.9 bits (155), Expect = 2e-10
Identities = 93/626 (14%), Positives = 177/626 (28%), Gaps = 211/626 (33%)
Query: 6 TMKNGDIDRAI----RMFEKAETHQQHVPRMLLENTDKLEKYIIQSKDPV-LLKWWAQYI 60
T+ +G ++ + F A Q+ ++L E T+ +P + +++
Sbjct: 10 TLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFA----ADDEPTTPAELVGKFL 65
Query: 61 ESTEDMDLAMKYYEEARDYLSMVRVL--CFLQDF-------SRAAELANASGDTAA---- 107
+ + + ++ + F + + AA+L + T
Sbjct: 66 GYVSSLVEP----SKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKE 121
Query: 108 ---AYHLARQYENS--------------------------GQ------FDEAIHFYSVAG 132
Y AR GQ F+E Y
Sbjct: 122 LIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQT-- 179
Query: 133 SCGNAVRLCKEQALDDQLWNLALSAGPSEQ-----IEAATYLETIE--PDKAVLLYHKAG 185
L K A + L L + +E+ + +LE PDK LL
Sbjct: 180 YHVLVGDLIKFSA--ETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLS--IP 235
Query: 186 A---LHKALDLA-FKLTLSNSGLVFQIKAMKCLLKSGDTNKIIFFAGVS-RMKEIYVMAA 240
L + LA + +T G G+ G + + + V A
Sbjct: 236 ISCPLIGVIQLAHYVVTAKLLGF-----------TPGELRSY--LKGATGHSQGL-VTAV 281
Query: 241 NYLQSSDWKSQPELLKSIISFYSKG-KAPHLLANFYVSC-AQVEIDEFGNYEKGLGALNE 298
++ W+ SF+ KA +L F++ + + N L +
Sbjct: 282 AIAETDSWE----------SFFVSVRKAITVL--FFIGVRCY---EAYPNTSLPPSILED 326
Query: 299 AKRCLLKHNDSMYETLKSS--VVEKLAEVEIDEFGNYEKGLGALNEAKRCLLKHNDSMYE 356
+ L++N E + S + L + ++ + + N L +
Sbjct: 327 S----LENN----EGVPSPMLSISNLTQEQV------QDYVNKTNSH----LPAGKQVEI 368
Query: 357 TLKSS----VV----EKIAEVDKYLE-----MKRNQS---FRSSNTDII---LPVEKWTL 397
+L + VV + + ++ L +QS F LPV
Sbjct: 369 SLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPV----- 423
Query: 398 LS-------LARVLEGI--EYKVGKFPFAANSRA------KTNNDTDGFVKVLGDKLTDK 442
+ L + I + F A +D + +++ D
Sbjct: 424 -ASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDC 482
Query: 443 VLGV-------------HII--GPGIEYKVGKFPFAANSRAKTNNDTDGFVKVLGDKLTD 487
++ + HI+ GPG +G T+ + DG
Sbjct: 483 IIRLPVKWETTTQFKATHILDFGPGGASGLGVL---------THRNKDG----------- 522
Query: 488 KVLGVHIIGPAAGELINEAVLAMEYG 513
GV +I AG L + +YG
Sbjct: 523 --TGVRVI--VAGTL--DINPDDDYG 542
Score = 58.5 bits (141), Expect = 1e-08
Identities = 71/346 (20%), Positives = 107/346 (30%), Gaps = 128/346 (36%)
Query: 66 MDLAMKY--YEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAAYHLARQY-------- 115
MDL Y + A+D V ++RA D H Y
Sbjct: 1633 MDL---YKTSKAAQD------V------WNRA--------DN----HFKDTYGFSILDIV 1665
Query: 116 -ENSGQFDEAIHFYSVAGSCGNAVR-----LCKEQALDDQLWNLALSAGPSEQIEAATYL 169
N IHF G G +R + E +D +L + +E + T+
Sbjct: 1666 INNPVNL--TIHF---GGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTF- 1719
Query: 170 ETIEPDKAVLLYHKAGALHK------ALDLAFKLTLSNSGLVFQIKAMKCLLKS-GDTNK 222
+ G L AL + KA LKS G
Sbjct: 1720 -----------RSEKGLLSATQFTQPAL-----TLME--------KAAFEDLKSKGLIPA 1755
Query: 223 IIFFAGVSRMKEIY---VMAANYLQSSDWKSQPELLKSIISFYSKGKAPHLLANFYVSCA 279
FAG S + E Y A+ + L++ + FY +G
Sbjct: 1756 DATFAGHS-LGE-YAALASLADVMSIES------LVE--VVFY-RGMTMQ---------V 1795
Query: 280 QVEIDEFGNYEKGLGALNEAKRCLLKHNDSMYETLKSSVVEKLAE-----VEIDEFGNY- 333
V DE G G+ A+N R + E L+ VVE++ + VEI NY
Sbjct: 1796 AVPRDELGRSNYGMIAINPG-RVAASFSQ---EALQ-YVVERVGKRTGWLVEI---VNYN 1847
Query: 334 EKG--------LGALNEAKRCL--LKHNDSMYETLKSSV-VEKIAE 368
+ L AL+ L +K L+ S+ +E++
Sbjct: 1848 VENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEVEG 1893
Score = 54.7 bits (131), Expect = 2e-07
Identities = 55/311 (17%), Positives = 101/311 (32%), Gaps = 91/311 (29%)
Query: 445 GVHIIGPGIE-YKVGKFPFAAN--SRAKTNNDTDGFVKVLGDKLTD------KVLGVHII 495
G G G++ YK A + +RA + F G + D L +H
Sbjct: 1625 GSQEQGMGMDLYK--TSKAAQDVWNRADNH-----FKDTYGFSILDIVINNPVNLTIHF- 1676
Query: 496 GPAAGELINEAVLAMEYGASCEDVARTCHAHPTVCVEKNDTLGGTCLNVGCIPSKALLNN 555
G G+ I E AM + E + + E N+ K LL+
Sbjct: 1677 GGEKGKRIRENYSAMIF----ETIVDGKLKTEKIFKEINEHSTSYTFR----SEKGLLSA 1728
Query: 556 SHY-------YHMAHSGDMKARGIEVEGVKLNLETMMGTKS----AAVKALTGGIAHLFK 604
+ + A D+K++G+ T G S AA+ +L ++ +
Sbjct: 1729 TQFTQPALTLMEKAAFEDLKSKGLIPADA-----TFAG-HSLGEYAALASLADVMS--IE 1780
Query: 605 SNKALKIITKQIILILIIYRVLLKWWAQYIESTEDMDLAMKYYEEARDYLSMVRVLCFLQ 664
S ++ ++ YR ++ A+ E R M+ +
Sbjct: 1781 S--LVE---------VVFYR------GMTMQV------AVPRDELGRSNYGMIAI----- 1812
Query: 665 DFSRAAELANASGDTAAAYHLARQYENSGQFDEAIHF------YSVAGSCGNAVRLCGQL 718
+A + A Y + R + +G E +++ Y AG L
Sbjct: 1813 ---NPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAG----------DL 1859
Query: 719 DAVESIASELN 729
A++++ + LN
Sbjct: 1860 RALDTVTNVLN 1870
Score = 37.3 bits (86), Expect = 0.037
Identities = 38/245 (15%), Positives = 79/245 (32%), Gaps = 71/245 (28%)
Query: 10 GDIDRAIR------MFEKAETHQQHVPRMLLENTDKLEKYIIQSKDPVLLKWWAQYIEST 63
G+ + IR +FE + ++ E + Y +S+ +L T
Sbjct: 1678 GEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSA--------T 1729
Query: 64 ED-------MDLAMKYYEEARD-----------------Y--L-SMVRVLCFLQDFSRAA 96
+ M+ A +E+ + Y L S+ V+
Sbjct: 1730 QFTQPALTLMEKAA--FEDLKSKGLIPADATFAGHSLGEYAALASLADVM----SIESLV 1783
Query: 97 ELANASGDTAAAYHLARQYENSGQFDEAIHFYSVAGSCGNAVRLCKEQALDDQLWNLALS 156
E+ G T A + G+ + + +A + G ++AL + +
Sbjct: 1784 EVVFYRGMTMQV---AVPRDELGRSNYGM----IAINPGRVAASFSQEALQYVVERVGKR 1836
Query: 157 AG----------PSEQIEAATYLETIEPDKAVLLYHKAGALHKALDLAFKLTLSNSGLVF 206
G ++Q AA L ++ VL + K + +D+ +L S S +
Sbjct: 1837 TGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKL----QKIDII-ELQKSLS--LE 1889
Query: 207 QIKAM 211
+++
Sbjct: 1890 EVEGH 1894
Score = 37.3 bits (86), Expect = 0.039
Identities = 55/368 (14%), Positives = 100/368 (27%), Gaps = 129/368 (35%)
Query: 510 ME-YGASCEDVAR----TCHAHPTVCVEKNDTLGGTCLNVGCIPSKALLNNSHYYHMAHS 564
M+ Y S A+ H DT G + L++ ++NN H
Sbjct: 1633 MDLYKTS--KAAQDVWNRADNHFK------DTYGFSILDI-------VINNPVN-LTIHF 1676
Query: 565 GDMKARGIEVEGVKLNLETMMGTKSAAVKALTGGIAHL----FKSNKALKIITK--QIIL 618
G K + I + ET++ K K H F+S K L T+ Q L
Sbjct: 1677 GGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPAL 1736
Query: 619 ILI---IYRVLLKWWAQYIEST-------EDMDLAMKYYEEARDY--L-SMVRVLCFLQD 665
L+ + L ++T E Y L S+ V+
Sbjct: 1737 TLMEKAAFEDLKSKGLIPADATFAGHSLGE--------------YAALASLADVM----S 1778
Query: 666 FSRAAELANASGDTAAAYHLARQYENSGQFDEAIHFYSVAGSCGNAVRLCGQLDAVESIA 725
E+ G T A + G+ + Y + V +A++ +
Sbjct: 1779 IESLVEVVFYRGMTMQV---AVPRDELGRSN-----YGMIAINPGRVAASFSQEALQYVV 1830
Query: 726 SELNVQSDQDLILKCASYFARREHHDRAVQMYAIARRYDQALSLIQTKHVPLSEELADLL 785
+ ++ + E+ +
Sbjct: 1831 ERVGKRTGWLV-------------------------------------------EIVNYN 1847
Query: 786 VPPESDDQRQVVLNTLGNCAAVQANYHLATKLFTQAGDKGVKL-NLETMMGTKSAAVKAL 844
V + Q V G+ A+ T + + + + L+ + + V+
Sbjct: 1848 VENQ-----QYVAA--GDLRALDT----VTNVLNFIKLQKIDIIELQKSLSLE--EVE-- 1892
Query: 845 TGGIAHLF 852
HLF
Sbjct: 1893 ----GHLF 1896
Score = 36.6 bits (84), Expect = 0.052
Identities = 82/451 (18%), Positives = 134/451 (29%), Gaps = 164/451 (36%)
Query: 719 DAVESIASELNVQSDQDLILKCASYFARREHHDRAVQMYAIARRYDQALSLI----QTKH 774
+ E A++ + +L+ K Y + + Q +DQ L+L + +
Sbjct: 43 EPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQ-------FDQVLNLCLTEFENCY 95
Query: 775 VPLSEE-----LADLLVPPESDDQRQVVLNTLGNCAAVQANYHLATKLFTQAGDKGVKLN 829
L A LL ++ TL + NY A + + DK
Sbjct: 96 --LEGNDIHALAAKLLQENDT---------TLVKTKELIKNYITARIMAKRPFDK----- 139
Query: 830 LETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKI------------TGPNTV----- 872
+ SA +A+ G A L G G T V
Sbjct: 140 -----KSNSALFRAVGEGNAQLV-----AIFGGQGNTDDYFEELRDLYQTYHVLVGDLIK 189
Query: 873 -------TVIKSDGSTEEVKTKNILIA---TGSEVTP-----------FPGI-------- 903
+I++ E+V T+ + I TP P I
Sbjct: 190 FSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHY 249
Query: 904 EVDEETIVSSTGAL-SLKKGSVWGRLGAEVTAIEFMNAIGGMGIDGE----VAKQFQRIL 958
V + + + G L S KG+ G VTA+ AI E ++ +L
Sbjct: 250 VVTAKLLGFTPGELRSYLKGAT-GHSQGLVTAV----AI-AETDSWESFFVSVRKAITVL 303
Query: 959 GKQGMQFKLGTKVTGA----SKSGDNITVTIEN----------VKDPTKKE--------- 995
F +G + A S + ++EN + + T+++
Sbjct: 304 ------FFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTN 357
Query: 996 -ELSCD-----AL------LVCVGRRP----YTHNLGLEEIGIEKD-EKGRVP------- 1031
L +L LV G P Y NL L + ++ R+P
Sbjct: 358 SHLPAGKQVEISLVNGAKNLVVSG--PPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLK 415
Query: 1032 VNSRFQTV-IPNIFAIGDCIHGPMLAHKAED 1061
++RF V P F H +L A D
Sbjct: 416 FSNRFLPVASP--F------HSHLLV-PASD 437
>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold,
oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens}
PDB: 3h8i_A*
Length = 409
Score = 60.1 bits (146), Expect = 2e-09
Identities = 19/143 (13%), Positives = 46/143 (32%), Gaps = 16/143 (11%)
Query: 935 IEFMNAIGGM-GIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTK 993
+ + + + K I + G++ K+ + + D K
Sbjct: 204 VTVFSPGEYLSDLSPNSRKAVASIYNQLGIKLVHNFKIKE---------IREHEIVD-EK 253
Query: 994 KEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTV-IPNIFAIGDC--I 1050
+ D ++ + D+ G +P + ++ N++A+GD +
Sbjct: 254 GNTIPADITILLPPYTG--NPALKNSTPDLVDDGGFIPTDLNMVSIKYDNVYAVGDANSM 311
Query: 1051 HGPMLAHKAEDEGIVCVEGIAGD 1073
P L + A G + + +A
Sbjct: 312 TVPKLGYLAVMTGRIAAQHLANR 334
>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase,
Cys356Ala variant, integral membrane protein; HET: FAD
LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB:
3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A*
3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A*
3t2y_A* 3kpk_A*
Length = 437
Score = 56.7 bits (137), Expect = 3e-08
Identities = 32/158 (20%), Positives = 51/158 (32%), Gaps = 21/158 (13%)
Query: 930 AEVTAIEFMNAIGGMGIDG--EVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIEN 987
T I IG +GI G + + L ++G++ KVT + + VT +
Sbjct: 188 PSFTFITSEPYIGHLGIQGVGDSKGILTKGLKEEGIEAYTNCKVTKVE--DNKMYVTQVD 245
Query: 988 VKDPTKKE-ELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQ-TVIPNIFA 1045
K T KE L ++ + + + + G V V+ + NIFA
Sbjct: 246 EKGETIKEMVLPVKFGMMIP---AFKGVPAVAGVEGLCNPGGFVLVDEHQRSKKYANIFA 302
Query: 1046 IGDCIH------------GPMLAHKAEDEGIVCVEGIA 1071
G I P + E V I
Sbjct: 303 AGIAIAIPPVETTPVPTGAPKTGYMIESMVSAAVHNIK 340
>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein;
HET: FAD; 2.35A {Thermoplasma acidophilum}
Length = 319
Score = 54.4 bits (132), Expect = 8e-08
Identities = 31/128 (24%), Positives = 58/128 (45%), Gaps = 11/128 (8%)
Query: 927 RLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNIT-VTI 985
VT IE+M + + + K+ + + + +VT G +T V
Sbjct: 176 EYVKNVTIIEYMPKYMC-------ENAYVQEIKKRNIPYIMNAQVTEIVGDGKKVTGVKY 228
Query: 986 ENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFA 1045
++ +K + D + + VG P T L++ G++ DE+G + V+SR +T +P ++A
Sbjct: 229 KDRTTGEEKL-IETDGVFIYVGLIPQTS--FLKDSGVKLDERGYIVVDSRQRTSVPGVYA 285
Query: 1046 IGDCIHGP 1053
GD G
Sbjct: 286 AGDVTSGN 293
>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national
institute of allergy AN infectious diseases; HET: MSE
FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*
Length = 304
Score = 52.9 bits (128), Expect = 2e-07
Identities = 25/224 (11%), Positives = 59/224 (26%), Gaps = 44/224 (19%)
Query: 852 FKSNKVTQLNGHGKITGPNTVTVIKSDGSTEEVKTKNILIATGS--EVTPFPGIE----- 904
+ V + ++ D + + +L+ATG E P +
Sbjct: 78 YYEKTVVMITK----QSTGLFEIVTKDH--TKYLAERVLLATGMQEEFPSIPNVREYYGK 131
Query: 905 -------------VDEETIVSSTGA-LSLKKGSVWGRLGAEVTAIEFMNAIGGMGIDGEV 950
D+ I+ S +L + ++ N E+
Sbjct: 132 SLFSCPYCDGWELKDQPLIIISENEDHTLHMTKLVYNWSTDLV--IATN-------GNEL 182
Query: 951 AKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRP 1010
++ L + + + + G+ + + +
Sbjct: 183 SQTIMDELSNKNIPV-ITESIRTLQ--GEGGYLKKVEFHS---GLRIERAGGFIVPTFFR 236
Query: 1011 YTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIHGPM 1054
N +E++G E G ++ +T NI+ G+
Sbjct: 237 --PNQFIEQLGCELQSNGTFVIDDFGRTSEKNIYLAGETTTQGP 278
>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding,
FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A
{Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*
Length = 323
Score = 51.7 bits (125), Expect = 6e-07
Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 12/80 (15%)
Query: 970 KVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGR 1029
V V +EN+K KE L+ + + + +G P T + GIE D G
Sbjct: 221 VVKQ---------VVVENLKTGEIKE-LNVNGVFIEIGFDPPTD--FAKSNGIETDTNGY 268
Query: 1030 VPVNSRFQTVIPNIFAIGDC 1049
+ V+ +T +P +FA GDC
Sbjct: 269 IKVDEWMRTSVPGVFAAGDC 288
>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site,
oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter
simplex}
Length = 690
Score = 50.0 bits (120), Expect = 4e-06
Identities = 33/205 (16%), Positives = 61/205 (29%), Gaps = 51/205 (24%)
Query: 889 ILIATGSE----------VTPFPGIEVDEETIVSSTGALSLKK------------GSVWG 926
++ ATG+ T P + ++ + + G
Sbjct: 480 VITATGATWRTDGVARFHTTALPIA--EGMQVLGPDDLFAGRLPDGKKVVVYDDDHYYLG 537
Query: 927 --------RLGAEVTAIEFMNAIGGMGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSG 978
+ G EV+ + + + + QR L + G+ V G
Sbjct: 538 GVVAELLAQKGYEVSIVTPGAQVSSWTNNTFEVNRIQRRLIENGVARVTDHAVVAVGAGG 597
Query: 979 DNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQT 1038
VT+ + + + EL CDA+++ R P L + + + G
Sbjct: 598 ----VTVRDTYA-SIERELECDAVVMVTARLPRE---ELYLDLVARRDAGE--------- 640
Query: 1039 VIPNIFAIGDCIHGPMLAHKAEDEG 1063
I ++ IGD P A G
Sbjct: 641 -IASVRGIGDAW-APGTIAAAVWSG 663
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin,
iron-sulfur clusters, pyrimidine catabolism,
5-fluorouracil degradation, oxidoreductase; HET: FMN FAD;
1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1
d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
Length = 1025
Score = 49.8 bits (119), Expect = 5e-06
Identities = 14/77 (18%), Positives = 26/77 (33%), Gaps = 1/77 (1%)
Query: 995 EELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSR-FQTVIPNIFAIGDCIHGP 1053
L D ++ G + I+ + V+ QT P +FA GD +
Sbjct: 427 VHLKADVVISAFGSVLRDPKVKEALSPIKFNRWDLPEVDPETMQTSEPWVFAGGDIVGMA 486
Query: 1054 MLAHKAEDEGIVCVEGI 1070
++ ++G I
Sbjct: 487 NTTVESVNDGKQASWYI 503
>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein
complex; HET: FMN ADP AMP; 2.0A {Methylophilus
methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB:
1djn_A* 1o95_A* 2tmd_A* 1djq_A*
Length = 729
Score = 49.3 bits (118), Expect = 6e-06
Identities = 32/241 (13%), Positives = 62/241 (25%), Gaps = 61/241 (25%)
Query: 857 VTQLNGHGKITGPNTVTVIKSDGSTEEVKTKN---ILIATGSE----------VTPFPGI 903
TQ+ K + + + + + ++V ++IATG+ P PG
Sbjct: 448 ETQITKLLKKNKESQLALGQKPMTADDVLQYGADKVIIATGARWNTDGTNCLTHDPIPGA 507
Query: 904 EVDEETIVSSTGALSLKK------------GSVWG--------RLGAEVTAIEFMNAIGG 943
+ ++ + KK G EVT + ++
Sbjct: 508 DASLPDQLTPEQVMDGKKKIGKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHLANY 567
Query: 944 MGIDGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPT----------- 992
R L + ++ + I + T
Sbjct: 568 -MHFTLEYPNMMRRLHELHVEELGDHFCSRIEPGRMEIYNIWGDGSKRTYRGPGVSPRDA 626
Query: 993 --KKEELSCDALLVCVGRRPYTHNL--GLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGD 1048
+ D+L++ GR L L+ E E + + IGD
Sbjct: 627 NTSHRWIEFDSLVLVTGRHSEC-TLWNELKARESEWAENDIKGI-----------YLIGD 674
Query: 1049 C 1049
Sbjct: 675 A 675
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein
structure initiative, no structural genomics consortium,
NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Length = 203
Score = 46.5 bits (111), Expect = 1e-05
Identities = 27/201 (13%), Positives = 50/201 (24%), Gaps = 54/201 (26%)
Query: 643 AMKYYEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAAYH-LARQYENSGQFDEAIHF 701
A Y R A LA+ + + A L Y +FDEA
Sbjct: 5 AHDYALAERQA---------------QALLAHPAT-ASGARFMLGYVYAFMDRFDEARAS 48
Query: 702 YSVAGSCGNAVRLCGQLDAVESIASELN----VQSDQDLILKCASYFAR-----REHHDR 752
+ + + + L+ V+ F +
Sbjct: 49 FQ------ALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPED 102
Query: 753 AVQM----------YAIARRYDQALSLIQTKHVPLSEELADLLVPPESDDQRQV--VLNT 800
+ A + K + +++ DDQ +
Sbjct: 103 PLAASANAYEVATVALHFGDLAGARQEYE-KSLVYAQQA---------DDQVAIACAFRG 152
Query: 801 LGNCAAVQANYHLATKLFTQA 821
LG+ A + N A + + +A
Sbjct: 153 LGDLAQQEKNLLEAQQHWLRA 173
Score = 38.4 bits (90), Expect = 0.005
Identities = 25/163 (15%), Positives = 44/163 (26%), Gaps = 49/163 (30%)
Query: 73 YEEARDYLSMVRVLCFLQDFSRAAELANASGD---TAAAYH-LARQYENSGQFDEAIHFY 128
++EAR F + A SGD A H + +G +D A +
Sbjct: 42 FDEARAS------------FQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCF 89
Query: 129 SVAGSCGNAVRLCKEQALDDQLWNLALSAGPSEQIEAAT-------YLETIEPDKAVLLY 181
+ + L S +A L + A Y
Sbjct: 90 --------------LEERE-----LLASLPEDPLAASANAYEVATVALHFGDLAGARQEY 130
Query: 182 HKAGALHKALDLAFKL--TLSNSGLVFQI-----KAMKCLLKS 217
K+ + D + G + Q +A + L++
Sbjct: 131 EKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRA 173
>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate
hydrogen bond, nucleotide binding fold, thior reductase,
thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium}
SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A
1zyp_A
Length = 521
Score = 46.5 bits (111), Expect = 4e-05
Identities = 21/125 (16%), Positives = 49/125 (39%), Gaps = 13/125 (10%)
Query: 927 RLGAEVTAIEFMNAIGGMGIDGEVAKQFQ-RILGKQGMQFKLGTKVTGASKSGDNIT-VT 984
+ VT +EF + + + Q ++ + + L + T G + +
Sbjct: 376 GIVEHVTLLEFAPEM-------KADQVLQDKVRSLKNVDIILNAQTTEVKGDGSKVVGLE 428
Query: 985 IENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIF 1044
+ ++ + V +G P T E +E++ G + ++++ +T + +F
Sbjct: 429 YRDRVSGDIHS-VALAGIFVQIGLLPNT---HWLEGALERNRMGEIIIDAKCETSVKGVF 484
Query: 1045 AIGDC 1049
A GDC
Sbjct: 485 AAGDC 489
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle
orientation, asymmetric CEL divisions; 2.10A {Drosophila
melanogaster}
Length = 411
Score = 46.1 bits (110), Expect = 5e-05
Identities = 34/218 (15%), Positives = 66/218 (30%), Gaps = 49/218 (22%)
Query: 623 YRVLLKWWAQYIESTEDMDLAMKYYEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAA 682
+ + E + A+++Y+E L ++R L G A
Sbjct: 182 HLGQRNPGKFGDDVKEALTRAVEFYQEN---LKLMRDL-------------GDRGAQGRA 225
Query: 683 YH-LARQYENSGQFDEAIHFYSVAGSCGNAVRLCGQLDAVESIASELN----VQSDQDLI 737
L Y G F AI + +R+ + + +
Sbjct: 226 CGNLGNTYYLLGDFQAAIEHH------QERLRIAREFGDRAAERRANSNLGNSHIFLGQF 279
Query: 738 LKCASYFAR-----REHHDRAVQ---------MYAIARRYDQALSLIQTKHVPLSEELAD 783
A ++ R E +R V+ Y + ++ A+ +H+ +++EL D
Sbjct: 280 EDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHN-RHLAIAQELGD 338
Query: 784 LLVPPESDDQRQVVLNTLGNCAAVQANYHLATKLFTQA 821
E+ +LGN + + A K Q
Sbjct: 339 --RIGEAR-----ACWSLGNAHSAIGGHERALKYAEQH 369
Score = 42.7 bits (101), Expect = 5e-04
Identities = 36/241 (14%), Positives = 67/241 (27%), Gaps = 72/241 (29%)
Query: 639 DMDLAMKYYE------------EARDYLSMVRVLCFLQDFSRAAE-------LANASGD- 678
D + +++ + Y + +L D+++A + LA + D
Sbjct: 63 DCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDR 122
Query: 679 --TAAAYH-LARQYENSGQFDEAIHFYSVAGSCGNAVRLCGQLDAVESIASELN----VQ 731
A + L + G+FDEA + L QL S L V
Sbjct: 123 LGEAKSSGNLGNTLKVMGRFDEAAICCE------RHLTLARQLGDRLSEGRALYNLGNVY 176
Query: 732 SDQ----DLILKCASYFARREHHDRAVQMY----AIARR--------------------- 762
+ +E RAV+ Y + R
Sbjct: 177 HAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLL 236
Query: 763 --YDQALSLIQTKHVPLSEELADLLVPPESDDQRQVVLNTLGNCAAVQANYHLATKLFTQ 820
+ A+ Q + + ++ E D E + LGN + A + + +
Sbjct: 237 GDFQAAIEHHQ-ERLRIAREFGDR--AAERR-----ANSNLGNSHIFLGQFEDAAEHYKR 288
Query: 821 A 821
Sbjct: 289 T 289
Score = 41.5 bits (98), Expect = 0.001
Identities = 36/240 (15%), Positives = 67/240 (27%), Gaps = 82/240 (34%)
Query: 10 GDIDRAIRMFEKAETHQQHVPRMLLENTDKLEK----------YIIQSKDPVLLKWWAQY 59
G D A E+ T + + D+L + Y + K
Sbjct: 140 GRFDEAAICCERHLTLARQLG-------DRLSEGRALYNLGNVYHAKGKHLGQRNPGKFG 192
Query: 60 IESTEDMDLAMKYYEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAAYH-LARQYENS 118
+ E + A+++Y+E L ++R L G A L Y
Sbjct: 193 DDVKEALTRAVEFYQEN---LKLMRDL-------------GDRGAQGRACGNLGNTYYLL 236
Query: 119 GQFDEAIHFYSVAGSCGNAVRLCKEQALD------DQ------LWNLALSAGPSEQIEAA 166
G F AI + ++ L D+ NL
Sbjct: 237 GDFQAAIEHH--------------QERLRIAREFGDRAAERRANSNLGN----------- 271
Query: 167 TYLETIEPDKAVLLYHKAGALHKAL----DLAFKLTLSNSGLVFQI-----KAMKCLLKS 217
+++ + + A Y + AL L A + + G + + A++ +
Sbjct: 272 SHIFLGQFEDAAEHYKRTLALAVELGEREVEA--QSCYSLGNTYTLLHEFNTAIEYHNRH 329
Score = 38.8 bits (91), Expect = 0.009
Identities = 26/208 (12%), Positives = 53/208 (25%), Gaps = 49/208 (23%)
Query: 639 DMDLAMKYYEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAAYHLARQYENSGQFDEA 698
++ S ELA + N+G
Sbjct: 23 SGGGGTNSHDGN---SQQGSGS--DGGSSMCLELAL----------EGERLCNAGDCRAG 67
Query: 699 IHFYSVAGSCGNAVRLCGQLDAVESIASELN----VQSDQDLILKCASYF-----ARREH 749
+ F+ A + + + ++++ + K Y +
Sbjct: 68 VAFFQAA--------IQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSM 119
Query: 750 HDRAVQM---------YAIARRYDQALSLIQTKHVPLSEELADLLVPPESDDQRQVVLNT 800
+DR + + R+D+A + +H+ L+ +L D E L
Sbjct: 120 NDRLGEAKSSGNLGNTLKVMGRFDEAAICCE-RHLTLARQLGDR--LSEGR-----ALYN 171
Query: 801 LGNCAAVQANYHLATKLFTQAGDKGVKL 828
LGN + + D L
Sbjct: 172 LGNVYHAKGKHLGQRNPGKFGDDVKEAL 199
Score = 36.9 bits (86), Expect = 0.033
Identities = 20/162 (12%), Positives = 42/162 (25%), Gaps = 41/162 (25%)
Query: 65 DMDLAMKYYEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAAYHLARQYENSGQFDEA 124
++ S ELA + N+G
Sbjct: 23 SGGGGTNSHDGN---SQQGSGS--DGGSSMCLELAL----------EGERLCNAGDCRAG 67
Query: 125 IHFYSVAGSCGNAVRLCKEQALDDQLWNLALSAGPSEQIEAATYLETIEPDKAVLLYHKA 184
+ F+ + A+ +L + Q+ Y + +KA+ +
Sbjct: 68 VAFF--------------QAAIQAGTEDLRTLSAIYSQL-GNAYFYLGDYNKAMQYHKHD 112
Query: 185 GALHKAL----DLAFKLTLSNSGLVFQI-----KAMKCLLKS 217
L K++ A + N G ++ +A C +
Sbjct: 113 LTLAKSMNDRLGEA--KSSGNLGNTLKVMGRFDEAAICCERH 152
Score = 33.8 bits (78), Expect = 0.33
Identities = 24/151 (15%), Positives = 47/151 (31%), Gaps = 50/151 (33%)
Query: 65 DMDLAMKYYE--------------EARDYLSMVRVLCFLQDFSRAAELANAS-------G 103
D A+++++ E R ++ FL F AAE + G
Sbjct: 238 DFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELG 297
Query: 104 D---TAAAYH-LARQYENSGQFDEAIHFYSVAGSCGNAVRLCKEQALDDQ------LWNL 153
+ A + + L Y +F+ AI +++ L Q L D+ W+L
Sbjct: 298 EREVEAQSCYSLGNTYTLLHEFNTAIEYHNRH--------LAIAQELGDRIGEARACWSL 349
Query: 154 ALSAGPSEQIEAATYLETIEPDKAVLLYHKA 184
+ ++A+ +
Sbjct: 350 GN-----------AHSAIGGHERALKYAEQH 369
Score = 32.3 bits (74), Expect = 0.84
Identities = 26/156 (16%), Positives = 51/156 (32%), Gaps = 46/156 (29%)
Query: 639 DMDLAMKYYE--------------EARDYLSMVRVLCFLQDFSRAAELANAS-------G 677
D A+++++ E R ++ FL F AAE + G
Sbjct: 238 DFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELG 297
Query: 678 D---TAAAYH-LARQYENSGQFDEAIHFYSVAGSCGNAVRLCGQLDAVESIASELNVQSD 733
+ A + + L Y +F+ AI +++ + + +L A
Sbjct: 298 EREVEAQSCYSLGNTYTLLHEFNTAIEYHN------RHLAIAQELGDRIGEARACW---- 347
Query: 734 QDLILKCASYFARREHHDRAVQMYAIARRYDQALSL 769
L + + H+RA++ +Q L L
Sbjct: 348 -SL----GNAHSAIGGHERALKY------AEQHLQL 372
>3h28_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein,
polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A
{Aquifex aeolicus} PDB: 3h27_A* 3h29_A* 3hyv_A* 3hyw_A*
3hyx_A*
Length = 430
Score = 45.9 bits (109), Expect = 5e-05
Identities = 20/161 (12%), Positives = 45/161 (27%), Gaps = 26/161 (16%)
Query: 930 AEVTAIEFMNAIGGMGIDG--EVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIEN 987
+T I +G G+ G + + + ++ + + V + V E+
Sbjct: 180 VPMTFITSEPYLGHFGVGGIGASKRLVEDLFAERNIDWIANVAVKAI----EPDKVIYED 235
Query: 988 VKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIE-KDEKGRVPVNSRFQTVI--PNIF 1044
+ T E+ + + + G + + ++ + +R NIF
Sbjct: 236 LNGNT--HEVPAKFTMFMPSFQG---PEVVASAGDKVANPANKMVIVNRCFQNPTYKNIF 290
Query: 1045 AIGDCIH------------GPMLAHKAEDEGIVCVEGIAGD 1073
+G P E + I D
Sbjct: 291 GVGVVTAIPPIEKTPIPTGVPKTGMMIEQMAMAVAHNIVND 331
>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase,
amidotransferase, ammonia assimilation, iron, zymogen;
HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}
Length = 456
Score = 46.0 bits (110), Expect = 6e-05
Identities = 13/59 (22%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Query: 995 EELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSR-FQTVIPNIFAIGDCIHG 1052
+ D ++ +G P +E ++ G + V+ R T + +FA GD + G
Sbjct: 363 FTVQADLVIKALGFEPEDLPNAFDEPELKVTRWGTLLVDHRTKMTNMDGVFAAGDIVRG 421
>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD,
disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A
{Escherichia coli} SCOP: c.3.1.5 c.3.1.5
Length = 310
Score = 45.2 bits (108), Expect = 6e-05
Identities = 18/82 (21%), Positives = 36/82 (43%), Gaps = 13/82 (15%)
Query: 968 GTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEK 1027
G+KV G + + + + V +G P T+ L E +E++
Sbjct: 210 GSKVVG---------LEYRDRVSGDIHN-IELAGIFVQIGLLPNTNWL---EGAVERNRM 256
Query: 1028 GRVPVNSRFQTVIPNIFAIGDC 1049
G + ++++ +T + +FA GDC
Sbjct: 257 GEIIIDAKCETNVKGVFAAGDC 278
>3r9u_A Thioredoxin reductase; structural genomics, center for structural
genomics of infec diseases, csgid, thioredoxin-disulfide
reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}
Length = 315
Score = 44.4 bits (106), Expect = 1e-04
Identities = 19/75 (25%), Positives = 30/75 (40%), Gaps = 3/75 (4%)
Query: 978 GDNITVTIENVKDPT-KKEELSCDALLVCVGRRPYTHNLG--LEEIGIEKDEKGRVPVNS 1034
GD + V VK +L+ + VG L + +E G+V V+
Sbjct: 211 GDKMGVAGVKVKLKDGSIRDLNVPGIFTFVGLNVRNEILKQDDSKFLCNMEEGGQVSVDL 270
Query: 1035 RFQTVIPNIFAIGDC 1049
+ QT + +FA GD
Sbjct: 271 KMQTSVAGLFAAGDL 285
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria
translocation, allosteric REG phosphoprotein, TPR
repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae}
PDB: 3fp3_A 3fp4_A 3lca_A
Length = 537
Score = 44.7 bits (106), Expect = 1e-04
Identities = 35/264 (13%), Positives = 73/264 (27%), Gaps = 44/264 (16%)
Query: 89 LQDFSRAAELA-NASGDTAAAYH-LARQYENSGQFDEAIHFYSVAGSCGNAVRLCKEQAL 146
D ++ L+ + A + + F+EAI +Y A+ L +
Sbjct: 7 EPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQ------YAIELDPNEP- 59
Query: 147 DDQLW-NLALSAGPSEQIEAA--TYLETIE--PDKAVLLYHKAGALHKA--LDLAFKLTL 199
+ N++ + +E + +E PD + L +A A A
Sbjct: 60 --VFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDA----- 112
Query: 200 SNSGLVFQIKAMKCLLKSGDTNKIIFFAGVSRMKEIYVMAANYLQSSDWKSQPELLKSII 259
+ + L +GD + + R + ++ + + +
Sbjct: 113 --------MFDLSVLSLNGDFDGASIEPMLER-----NLNKQAMKVLNENLSKDEGRGSQ 159
Query: 260 SFYSKGKAPHLLANFYVSCAQVEIDEFGNYEKGLGALNEAKRCLLKHNDSMYETLKSSVV 319
S F ++ NY+ L++A + L D Y +
Sbjct: 160 VLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLT 219
Query: 320 EKLAEVEIDEFGNYEKGLGALNEA 343
+ Y L A
Sbjct: 220 KST--------DMYHSLLSANTVD 235
Score = 32.4 bits (74), Expect = 0.82
Identities = 31/212 (14%), Positives = 56/212 (26%), Gaps = 22/212 (10%)
Query: 89 LQDFSRAAELANASGDTAAAYH-LARQYENSGQFDEAIHFYSVAGSCGNAVRLCKEQALD 147
++ ++A E+ D + A A E+ G F +A+ SV G+ E L+
Sbjct: 79 IEFTTKALEIKP---DHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLE 135
Query: 148 DQLWNLALSAGPSEQIEAATYLETIEPDKAVLLYHKAGALHKALDLAFKLTLSNSGLVFQ 207
L A+ + + P L G L+++ T SN
Sbjct: 136 RNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFF-GIFDSHLEVSSVNTSSNYD---- 190
Query: 208 IKAMKCLLKSGDTNKIIFFAGVSRMKEIYVMAANYLQSSDWKSQPELLKSIISFYSKGKA 267
A L + G ++ + + + A
Sbjct: 191 -TAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYH----SLLSANTVDDPLRENAALA 245
Query: 268 PHLLANFYVSCAQVEIDEFGNYEKGLGALNEA 299
F+ N L E+
Sbjct: 246 LCYTGIFHF--------LKNNLLDAQVLLQES 269
Score = 32.4 bits (74), Expect = 0.90
Identities = 16/141 (11%), Positives = 37/141 (26%), Gaps = 17/141 (12%)
Query: 58 QYIESTEDMDLAMKYYEEARDYLSMVRVLCFLQDFSRAAELANAS----GDTAAAY-HLA 112
+++ + ++ + Y+ + L ++ + + + Y H
Sbjct: 258 NLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRG 317
Query: 113 RQYENSGQFDEAIHFYSVAGSCGNAVRLCKEQALDDQLWNLALSAGPSEQIEAA--TYLE 170
+ Y + A + A L E LA + + + E
Sbjct: 318 QMYFILQDYKNAKEDFQ------KAQSLNPENV--YPYIQLACLLYKQGKFTESEAFFNE 369
Query: 171 TIE--PDKAVLLYHKAGALHK 189
T P + A L
Sbjct: 370 TKLKFPTLPEVPTFFAEILTD 390
Score = 30.5 bits (69), Expect = 3.6
Identities = 9/45 (20%), Positives = 17/45 (37%), Gaps = 2/45 (4%)
Query: 663 LQDFSRAAELA-NASGDTAAAYH-LARQYENSGQFDEAIHFYSVA 705
D ++ L+ + A + + F+EAI +Y A
Sbjct: 7 EPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYA 51
Score = 29.3 bits (66), Expect = 7.3
Identities = 20/134 (14%), Positives = 43/134 (32%), Gaps = 23/134 (17%)
Query: 7 MKNGDIDRAIRMFEKA-----ETHQQHVPRMLLENTDKLEKYIIQSKDPVLLKWWAQYIE 61
GD D AI+ ++ A + HV L K QS ++
Sbjct: 389 TDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIG--KATILARQSSQDPTQLDEEKFNA 446
Query: 62 STEDMDLAMKY---YEEARDYLSMVRVLCFL-------QDFSRAAELANASGDTAAAYHL 111
+ + + A + E+A + + ++ + + F +A LA
Sbjct: 447 AIKLLTKACELDPRSEQA--KIGLAQLKLQMEKIDEAIELFEDSAILAR---TMDEKLQ- 500
Query: 112 ARQYENSGQFDEAI 125
A + + + + +
Sbjct: 501 ATTFAEAAKIQKRL 514
>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B
reduced izoalloxazine bending, oxidoreductase; HET: FAD
NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*
Length = 311
Score = 44.0 bits (105), Expect = 2e-04
Identities = 18/84 (21%), Positives = 32/84 (38%), Gaps = 12/84 (14%)
Query: 968 GTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLG--LEEIGIEKD 1025
+ V+ ++I+N +K EL + VG L + + D
Sbjct: 209 ASGVSS---------LSIKNTAT-NEKRELVVPGFFIFVGYDVNNAVLKQEDNSMLCKCD 258
Query: 1026 EKGRVPVNSRFQTVIPNIFAIGDC 1049
E G + V+ +T + +FA GD
Sbjct: 259 EYGSIVVDFSMKTNVQGLFAAGDI 282
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like
repeat, protein transport; 2.90A {Saccharomyces
cerevisiae} SCOP: a.118.8.1
Length = 292
Score = 41.9 bits (98), Expect = 6e-04
Identities = 33/235 (14%), Positives = 80/235 (34%), Gaps = 23/235 (9%)
Query: 175 DKAVLLYHKAGALHKALDLAFKLTLSNSGLVFQIKAMKCLLKSGDTNKIIFFAGVSRMKE 234
++A L +A +++ +G F KA K+G+ ++
Sbjct: 34 EEAADLCVQAATIYRLRKELNL-----AGDSFL-KAADYQKKAGNEDEAG---------N 78
Query: 235 IYVMAAN-YLQSSDWKSQPELLKSIISFYSKGKAPHLLANFYVSCAQVEIDEFGNYEKGL 293
YV A + + + + L++ I ++ ANF ++ ++ +Y K +
Sbjct: 79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAI 138
Query: 294 GALNEAKRCLLKHNDSMYETLKSSVVEKLAEVEIDEFGNYEKGLGALNEAKRCLLKHND- 352
A + + K A+++ + G Y + ++ + + +
Sbjct: 139 DCYELAGEWYAQDQSVALS---NKCFIKCADLKALD-GQYIEASDIYSKLIKSSMGNRLS 194
Query: 353 --SMYETLKSSVVEKIAEVDKYLEMKRNQSFRSSNTDIILPVEKWTLLSLARVLE 405
S+ + + ++A D + Q +S + + E L SL +
Sbjct: 195 QWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVN 249
Score = 36.9 bits (85), Expect = 0.026
Identities = 23/174 (13%), Positives = 47/174 (27%), Gaps = 19/174 (10%)
Query: 209 KAMKCLLKSGDTNKIIFFAGVSRMKE---IYVMAAN-YLQSSDWKSQPELLKSIISFYSK 264
+A K + S K+ + + +E + V AA Y + + + K
Sbjct: 10 RAEKKGVPSSGFMKLFSGSDSYKFEEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKK 69
Query: 265 GKAPHLLANFYVSCAQVEIDEFGNYEKGLGALNEAKRCLLKHNDSMYETLKSSVV----E 320
N YV + ++ G A L +
Sbjct: 70 AGNEDEAGNTYVEAYKC-------FKS-GGNSVNAVDSLENAIQIFTHRGQFRRGANFKF 121
Query: 321 KLAEVEIDEFGNYEKGLGALNEAKRCLLKHNDSMYETLKSSVVEKIAEVDKYLE 374
+L E+ ++ +Y K + A + + K A++
Sbjct: 122 ELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALS---NKCFIKCADLKALDG 172
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein
O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB:
2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Length = 568
Score = 42.5 bits (100), Expect = 7e-04
Identities = 24/141 (17%), Positives = 43/141 (30%), Gaps = 15/141 (10%)
Query: 639 DMDLAMKYYEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAAYHLARQYENSGQFDEA 698
R + R +A++ A A L E++GQ + A
Sbjct: 53 HPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAA--PEHPGIALWLGHALEDAGQAEAA 110
Query: 699 IHFYSVA-----------GSCGNAVRLCGQLDAVESIASELNVQSDQDLILKCASYFARR 747
Y+ A N R A++ +++++ Q + FA
Sbjct: 111 AAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG--VGAVEPFAFL 168
Query: 748 EHHDRAVQMYAIARRYDQALS 768
A + A AR QA++
Sbjct: 169 SEDASAAEQLACARTRAQAIA 189
Score = 36.7 bits (85), Expect = 0.046
Identities = 16/130 (12%), Positives = 26/130 (20%), Gaps = 21/130 (16%)
Query: 9 NGDIDRAIRMFEKAETHQQHVPR------MLLENTDKLEKYIIQSKDPVLLKWWAQYIES 62
D R + A H+
Sbjct: 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGE------------MAVQRG 49
Query: 63 TE-DMDLAMKYYEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAAYHLARQYENSGQF 121
R + R +A++ A A L E++GQ
Sbjct: 50 LALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAA--PEHPGIALWLGHALEDAGQA 107
Query: 122 DEAIHFYSVA 131
+ A Y+ A
Sbjct: 108 EAAAAAYTRA 117
Score = 33.7 bits (77), Expect = 0.36
Identities = 17/106 (16%), Positives = 25/106 (23%), Gaps = 14/106 (13%)
Query: 89 LQDFSRAAELANASGDTAAAYHLARQYENSGQFDEAIHFYSVAGSCGNAVRLCKEQALDD 148
L A D A LA G + L +
Sbjct: 9 LLQLRAAVRHR--PQDFVAWLMLADAELGMGDTTAGEMAVQ------RGLALHPGHP--E 58
Query: 149 QLWNLALSAGPSEQI-EAATYLE---TIEPDKAVLLYHKAGALHKA 190
+ L ++ EAA L+ P+ + AL A
Sbjct: 59 AVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDA 104
Score = 29.8 bits (67), Expect = 5.1
Identities = 12/126 (9%), Positives = 22/126 (17%), Gaps = 21/126 (16%)
Query: 663 LQDFSRAAELANASGDTAAAYHLARQYENSGQFDEAIHFYSVA-----------GSCGNA 711
L A D A LA G G
Sbjct: 9 LLQLRAAVRHR--PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRV 66
Query: 712 VRLCGQLDAVESI---ASELNVQSDQDLILKCASYFARREHHDRAVQMY----AIARRYD 764
+ + AS+ + + + + A Y +
Sbjct: 67 RWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAG-QAEAAAAAYTRAHQLLPEEP 125
Query: 765 QALSLI 770
+ +
Sbjct: 126 YITAQL 131
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain,
DNA-binding, transcription regulation, transmembrane;
1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Length = 372
Score = 42.0 bits (98), Expect = 8e-04
Identities = 21/128 (16%), Positives = 42/128 (32%), Gaps = 10/128 (7%)
Query: 10 GDIDRAIRMFEKA-----ETHQQHVPRMLLENTDKLEKYIIQSKDPVLLKWWAQYIESTE 64
++RA + + E + L++ + + + + L + E
Sbjct: 213 KSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPE 272
Query: 65 DMDLAMKYYEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAAYH-LARQYENSGQFDE 123
+L++ Y +A L + Q + +L + Y L + YE G E
Sbjct: 273 LNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE----MSWLNYVLLGKVYEMKGMNRE 328
Query: 124 AIHFYSVA 131
A Y A
Sbjct: 329 AADAYLTA 336
Score = 35.1 bits (80), Expect = 0.13
Identities = 13/114 (11%), Positives = 28/114 (24%), Gaps = 14/114 (12%)
Query: 606 NKALKIITKQIILILIIYRVLLKWWAQYIESTEDMDLAMKYYE----------EARDYLS 655
+ ++ + V + +Q+ + + + + Y
Sbjct: 223 GEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQI 282
Query: 656 MVRVLCFLQDFSRAAELAN---ASGDTAAAYH-LARQYENSGQFDEAIHFYSVA 705
+ + N + Y L + YE G EA Y A
Sbjct: 283 KAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTA 336
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR,
cell polarity, asymmetric CEL division, mitotic spindle
orientation; 2.60A {Homo sapiens}
Length = 406
Score = 41.5 bits (98), Expect = 0.001
Identities = 36/212 (16%), Positives = 60/212 (28%), Gaps = 51/212 (24%)
Query: 639 DMDLAMKYYE------------EARDYLSMVRVLCFLQDFSRAAE-------LANASGD- 678
D + ++E + Y + +L D+++A E LA GD
Sbjct: 24 DCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQ 83
Query: 679 --TAAAYH-LARQYENSGQFDEAIHFYSVAGSCGNAVRLCGQLDAVESIASELN----VQ 731
A A L + G FDEAI + + +L+ A L V
Sbjct: 84 LGEAKASGNLGNTLKVLGNFDEAIVCCQ------RHLDISRELNDKVGEARALYNLGNVY 137
Query: 732 SDQDLILKCASYFARREHHDRAVQMYAIARRYDQALSLIQTKHVPLSEELADLLVPPESD 791
+ F D + A+ + +++ L L
Sbjct: 138 HAK------GKSFGCPGPQDVGEFPEEVRDALQAAVDFYE-ENLSLVTAL---------G 181
Query: 792 DQRQV--VLNTLGNCAAVQANYHLATKLFTQA 821
D+ LGN + N+ A Q
Sbjct: 182 DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQR 213
Score = 35.4 bits (82), Expect = 0.10
Identities = 45/245 (18%), Positives = 71/245 (28%), Gaps = 80/245 (32%)
Query: 635 ESTEDMDLAMKYYEEARDYLSMVR-----------------VLCFLQDFSRAAE------ 671
E + + A+ +YEE LS+V L +F A
Sbjct: 158 EVRDALQAAVDFYEEN---LSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRL 214
Query: 672 -LANASGD---TAAAYH-LARQYENSGQFDEAIHFY--------------SVAGSC---G 709
+A GD AY L Y G+F+ A +Y A SC G
Sbjct: 215 LIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLG 274
Query: 710 NAVRLCGQLD-AVE------SIASELNVQSDQDLILKCASYFARREHHDRAV------QM 756
N L + A++ +IA ELN +
Sbjct: 275 NTYTLLQDYEKAIDYHLKHLAIAQELN------------------DRIGEGRACWSLGNA 316
Query: 757 YAIARRYDQALSLIQTKHVPLSEELADLLVPPESDDQRQVVLNTLGNCAAVQANYHLATK 816
Y +DQA+ + KH+ +S E+ D + + LG + +
Sbjct: 317 YTALGNHDQAMHFAE-KHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTNNSIMSENT 375
Query: 817 LFTQA 821
+
Sbjct: 376 EIDSS 380
Score = 35.0 bits (81), Expect = 0.15
Identities = 34/206 (16%), Positives = 54/206 (26%), Gaps = 69/206 (33%)
Query: 65 DMDLAMKYYE------------EARDYLSMVRVLCFLQDFSRAAE-------LANASGD- 104
D + ++E + Y + +L D+++A E LA GD
Sbjct: 24 DCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQ 83
Query: 105 --TAAAYH-LARQYENSGQFDEAIHFYSVAGSCGNAVRLCKEQALD------------DQ 149
A A L + G FDEAI ++ LD
Sbjct: 84 LGEAKASGNLGNTLKVLGNFDEAIVCC--------------QRHLDISRELNDKVGEARA 129
Query: 150 LWNLAL---------SAGPSEQIEAATYLETIEPDKAVLLYHKAGALHKAL----DLAFK 196
L+NL + + AV Y + +L AL
Sbjct: 130 LYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQG-- 187
Query: 197 LTLSNSGLVFQI-----KAMKCLLKS 217
N G + A+ +
Sbjct: 188 RAFGNLGNTHYLLGNFRDAVIAHEQR 213
Score = 33.8 bits (78), Expect = 0.27
Identities = 17/124 (13%), Positives = 35/124 (28%), Gaps = 27/124 (21%)
Query: 104 DTAAAYH-LARQYENSGQFDEAIHFYSVAGSCGNAVRLCKEQALDDQLWNLALSAGPSEQ 162
+ + SG + F+ E A+ +L + Q
Sbjct: 7 ASCLELALEGERLCKSGDCRAGVSFF--------------EAAVQVGTEDLKTLSAIYSQ 52
Query: 163 IEAATYLETIEPDKAVLLYHKAGALHKAL----DLAFKLTLSNSGLVFQI-----KAMKC 213
+ Y + KA+ +H L + + A N G ++ +A+ C
Sbjct: 53 L-GNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA--KASGNLGNTLKVLGNFDEAIVC 109
Query: 214 LLKS 217
+
Sbjct: 110 CQRH 113
Score = 33.0 bits (76), Expect = 0.46
Identities = 47/264 (17%), Positives = 75/264 (28%), Gaps = 87/264 (32%)
Query: 10 GDIDRAIRMFEKAETHQQHVPRMLLENTDKLEK----------YIIQSKDPVLLKWWAQY 59
G+ D AI ++ + E DK+ + Y + K
Sbjct: 101 GNFDEAIVCCQRHL-------DISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVG 153
Query: 60 IESTEDMDL---AMKYYEEARDYLSMVR-----------------VLCFLQDFSRAAE-- 97
E D A+ +YEE LS+V L +F A
Sbjct: 154 EFPEEVRDALQAAVDFYEEN---LSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAH 210
Query: 98 -----LANASGD---TAAAYH-LARQYENSGQFDEAIHFYSVAGSCGNAVRLCKEQALDD 148
+A GD AY L Y G+F+ A +Y L + L D
Sbjct: 211 EQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKT--------LLLARQLKD 262
Query: 149 Q------LWNLALSAGPSEQIEAATYLETIEPDKAVLLYHKAGALHKAL----DLAFKLT 198
+ ++L TY + +KA+ + K A+ + L
Sbjct: 263 RAVEAQSCYSLGN-----------TYTLLQDYEKAIDYHLKHLAIAQELNDRIGEG--RA 309
Query: 199 LSNSGLVFQI-----KAMKCLLKS 217
+ G + +AM K
Sbjct: 310 CWSLGNAYTALGNHDQAMHFAEKH 333
Score = 29.6 bits (67), Expect = 5.5
Identities = 17/147 (11%), Positives = 42/147 (28%), Gaps = 43/147 (29%)
Query: 678 DTAAAYH-LARQYENSGQFDEAIHFYSVAGSCGNAVRLCGQLDAVESIASELNVQSDQDL 736
+ + SG + F+ A + + ++++++ + +
Sbjct: 7 ASCLELALEGERLCKSGDCRAGVSFFEAA--------VQVGTEDLKTLSAIYSQLGN--- 55
Query: 737 ILKCASYFARREHHDRAVQMYAIARRYDQALSLIQTKHVPLSEELADLLVPPESDDQRQV 796
+YF + + +A++ + L+L + DQ
Sbjct: 56 -----AYFYLHD-YAKALEY------HHHDLTLAR-----------------TIGDQLGE 86
Query: 797 --VLNTLGNCAAVQANYHLATKLFTQA 821
LGN V N+ A +
Sbjct: 87 AKASGNLGNTLKVLGNFDEAIVCCQRH 113
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat,
protein-protein interaction, protein-binding, PR
binding; 2.30A {Mus musculus}
Length = 338
Score = 41.1 bits (97), Expect = 0.001
Identities = 37/212 (17%), Positives = 61/212 (28%), Gaps = 51/212 (24%)
Query: 639 DMDLAMKYYE------------EARDYLSMVRVLCFLQDFSRAAE-------LANASGD- 678
D + ++E + Y + +L D+++A E LA GD
Sbjct: 20 DCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQ 79
Query: 679 --TAAAYH-LARQYENSGQFDEAIHFYSVAGSCGNAVRLCGQLDAVESIASELN----VQ 731
A A L + G FDEAI + + +L+ A L V
Sbjct: 80 LGEAKASGNLGNTLKVLGNFDEAIVCCQ------RHLDISRELNDKVGEARALYNLGNVY 133
Query: 732 SDQDLILKCASYFARREHHDRAVQMYAIARRYDQALSLIQTKHVPLSEELADLLVPPESD 791
+ F D + A+ L + +++ L L
Sbjct: 134 HAK------GKSFGCPGPQDTGEFPEDVRNALQAAVDLYE-ENLSLVTAL---------G 177
Query: 792 DQRQV--VLNTLGNCAAVQANYHLATKLFTQA 821
D+ LGN + N+ A Q
Sbjct: 178 DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQR 209
Score = 35.7 bits (83), Expect = 0.064
Identities = 35/206 (16%), Positives = 54/206 (26%), Gaps = 69/206 (33%)
Query: 65 DMDLAMKYYE------------EARDYLSMVRVLCFLQDFSRAAE-------LANASGD- 104
D + ++E + Y + +L D+++A E LA GD
Sbjct: 20 DCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQ 79
Query: 105 --TAAAYH-LARQYENSGQFDEAIHFYSVAGSCGNAVRLCKEQALD------------DQ 149
A A L + G FDEAI ++ LD
Sbjct: 80 LGEAKASGNLGNTLKVLGNFDEAIVCC--------------QRHLDISRELNDKVGEARA 125
Query: 150 LWNLAL---------SAGPSEQIEAATYLETIEPDKAVLLYHKAGALHKAL----DLAFK 196
L+NL + AV LY + +L AL
Sbjct: 126 LYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQG-- 183
Query: 197 LTLSNSGLVFQI-----KAMKCLLKS 217
N G + A+ +
Sbjct: 184 RAFGNLGNTHYLLGNFRDAVIAHEQR 209
Score = 34.9 bits (81), Expect = 0.14
Identities = 29/186 (15%), Positives = 52/186 (27%), Gaps = 61/186 (32%)
Query: 641 DLAMKYYEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAAYH-LARQYENSGQFDEAI 699
A+ +E+ L + + E + + AY L Y G+F+ A
Sbjct: 200 RDAVIAHEQR---LLIAK------------EFGDKAA-ERRAYSNLGNAYIFLGEFETAS 243
Query: 700 HFYSVAGSCGNAVRLCGQLDAVESIASELN----VQSDQDLILKCASYFARREHHDRAVQ 755
+Y + L QL A +
Sbjct: 244 EYY------KKTLLLARQLKDRAVEAQSCYSLGNTYTLL--------------------- 276
Query: 756 MYAIARRYDQALSLIQTKHVPLSEELADLLVPPESDDQRQVVLNTLGNCAAVQANYHLAT 815
+ Y++A+ KH+ +++EL D E +LGN N+ A
Sbjct: 277 -----QDYEKAIDYHL-KHLAIAQELKD--RIGEGR-----ACWSLGNAYTALGNHDQAM 323
Query: 816 KLFTQA 821
+
Sbjct: 324 HFAEKH 329
Score = 32.6 bits (75), Expect = 0.73
Identities = 45/264 (17%), Positives = 73/264 (27%), Gaps = 87/264 (32%)
Query: 10 GDIDRAIRMFEKAETHQQHVPRMLLENTDKLEK----------YIIQSKDPVLLKWWAQY 59
G+ D AI ++ + E DK+ + Y + K
Sbjct: 97 GNFDEAIVCCQRHLD-------ISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTG 149
Query: 60 IESTEDM---DLAMKYYEEARDYLSMVR-----------------VLCFLQDFSRAAE-- 97
+ A+ YEE LS+V L +F A
Sbjct: 150 EFPEDVRNALQAAVDLYEEN---LSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAH 206
Query: 98 -----LANASGD---TAAAYH-LARQYENSGQFDEAIHFYSVAGSCGNAVRLCKEQALDD 148
+A GD AY L Y G+F+ A +Y L + L D
Sbjct: 207 EQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKT--------LLLARQLKD 258
Query: 149 Q------LWNLALSAGPSEQIEAATYLETIEPDKAVLLYHKAGALHKAL----DLAFKLT 198
+ ++L TY + +KA+ + K A+ + L
Sbjct: 259 RAVEAQSCYSLGN-----------TYTLLQDYEKAIDYHLKHLAIAQELKDRIGEG--RA 305
Query: 199 LSNSGLVFQI-----KAMKCLLKS 217
+ G + +AM K
Sbjct: 306 CWSLGNAYTALGNHDQAMHFAEKH 329
Score = 32.2 bits (74), Expect = 0.88
Identities = 18/125 (14%), Positives = 35/125 (28%), Gaps = 31/125 (24%)
Query: 105 TAAAYH-LARQYENSGQFDEAIHFYSVAGSCGNAVRLCKE--QALDDQLWNLALSAGPSE 161
+ + SG + F+ AV++ E + L L
Sbjct: 4 SCLELALEGERLCKSGDCRAGVSFFE------AAVQVGTEDLKTLSAIYSQLGN------ 51
Query: 162 QIEAATYLETIEPDKAVLLYHKAGALHKAL----DLAFKLTLSNSGLVFQI-----KAMK 212
Y + KA+ +H L + + A N G ++ +A+
Sbjct: 52 -----AYFYLHDYAKALEYHHHDLTLARTIGDQLGEA--KASGNLGNTLKVLGNFDEAIV 104
Query: 213 CLLKS 217
C +
Sbjct: 105 CCQRH 109
Score = 30.3 bits (69), Expect = 3.3
Identities = 18/146 (12%), Positives = 42/146 (28%), Gaps = 43/146 (29%)
Query: 679 TAAAYH-LARQYENSGQFDEAIHFYSVAGSCGNAVRLCGQLDAVESIASELNVQSDQDLI 737
+ + SG + F+ A + + ++++++ + L
Sbjct: 4 SCLELALEGERLCKSGDCRAGVSFFEAA--------VQVGTEDLKTLSAIYS-----QL- 49
Query: 738 LKCASYFARREHHDRAVQMYAIARRYDQALSLIQTKHVPLSEELADLLVPPESDDQRQV- 796
+YF + + +A++ + L+L + DQ
Sbjct: 50 --GNAYFYLHD-YAKALEY------HHHDLTLAR-----------------TIGDQLGEA 83
Query: 797 -VLNTLGNCAAVQANYHLATKLFTQA 821
LGN V N+ A +
Sbjct: 84 KASGNLGNTLKVLGNFDEAIVCCQRH 109
>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein,
oxidoreductase, redox- active center; HET: FAD; 1.90A
{Deinococcus radiodurans}
Length = 325
Score = 41.0 bits (97), Expect = 0.002
Identities = 21/80 (26%), Positives = 33/80 (41%), Gaps = 13/80 (16%)
Query: 970 KVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGR 1029
V+G V + N+K + EL+ D + + +G P T + + + G
Sbjct: 219 SVSG---------VKLRNLKT-GEVSELATDGVFIFIGHVPNT---AFVKDTVSLRDDGY 265
Query: 1030 VPVNSRFQTVIPNIFAIGDC 1049
V V T IP +FA GD
Sbjct: 266 VDVRDEIYTNIPMLFAAGDV 285
>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR
initiative, midwest center for structural genomics; HET:
FAD; 2.15A {Agrobacterium tumefaciens}
Length = 297
Score = 40.6 bits (96), Expect = 0.002
Identities = 12/62 (19%), Positives = 20/62 (32%), Gaps = 5/62 (8%)
Query: 995 EELSCDALLVCVGRRPYTHNLGLEEIGIEKDEK---GRVPVNSRFQTVIPNIFAIGDCIH 1051
++ L R +E++G +E + + QT IFA GD
Sbjct: 211 RSIALAGLFTQPKLRITVD--WIEKLGCAVEEGPMGSTIVTDPMKQTTARGIFACGDVAR 268
Query: 1052 GP 1053
Sbjct: 269 PA 270
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic
reticulum, protein folding, tetratricopeptiderepeat, J
domain, unfolded protein respons; 3.00A {Homo sapiens}
PDB: 2y4u_A
Length = 450
Score = 40.4 bits (95), Expect = 0.003
Identities = 40/216 (18%), Positives = 68/216 (31%), Gaps = 33/216 (15%)
Query: 7 MKNGDIDRAIRMFEKA-ETHQQHVP-RMLLENTDKLEKYIIQSKDPVLLKWWAQYIESTE 64
+ GD + ++ + + Q H + KL K I +++ + +Y ++T
Sbjct: 222 YQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDG---RYTDATS 278
Query: 65 DMDLAMKYYEEARDYLSMV---RVLCF---------LQDFSRAAELANASGDTAAAYHLA 112
+ MK +Y CF ++ S ++ + A A
Sbjct: 279 KYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME--PDNVNALKDRA 336
Query: 113 RQYENSGQFDEAIHFYSVAGSC-----------GNAVRLCKEQALDDQLWNLALSAGPSE 161
Y +DEAI Y A A RL K+ D L + +
Sbjct: 337 EAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKK 396
Query: 162 QIEAATYLE---TIEPDKAVLLYHKAGALHKALDLA 194
Q Y + PD K A K +D+A
Sbjct: 397 QEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIA 432
Score = 40.4 bits (95), Expect = 0.003
Identities = 25/208 (12%), Positives = 60/208 (28%), Gaps = 30/208 (14%)
Query: 7 MKNGDIDRAIRMFEKA-----ETHQQHVPRMLLENTDKLEKYIIQSKDPVLLKWWAQYIE 61
+K G +D A F+K +++ + L +D++++ Q+ + Y
Sbjct: 105 LKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSG---DYTA 161
Query: 62 STEDMDLAMK---YYEEARDYLSMVRVLCFLQDFSRAAELAN-----ASGDTAAAYHLAR 113
+ +D ++ + E + +A + +T A Y ++
Sbjct: 162 AIAFLDKILEVCVWDAEL--RELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKIST 219
Query: 114 QYENSGQFDEAIHFYSVA-------GSCGNAVRLCKEQALDDQLWNLALSAG-PSEQIEA 165
Y G + ++ C + K+ + + G ++
Sbjct: 220 LYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSK 279
Query: 166 ATYLETIEPDKA----VLLYHKAGALHK 189
+ EP A K
Sbjct: 280 YESVMKTEPSIAEYTVRSKERICHCFSK 307
Score = 39.7 bits (93), Expect = 0.005
Identities = 48/355 (13%), Positives = 100/355 (28%), Gaps = 68/355 (19%)
Query: 68 LAMKYYEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAAYHLARQYENSGQFDEAIHF 127
LAM + A L D ++ +L TAA G+ DEA
Sbjct: 71 LAMGKSKAA------------LPDLTKVIQLK--MDFTAARLQRGHLLLKQGKLDEAEDD 116
Query: 128 YSVAGS-----------CGNAVRLCKEQALDDQLWNLALSAGPSEQIEAATYLETIEPDK 176
+ ++ + Q L Q N S + I + +
Sbjct: 117 FKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWD 176
Query: 177 AVLLYHKAGALHK---------ALDLAFKL------TLSNSGLVFQI-----KAMKCL-- 214
A L +A K L A KL ++ ++ +
Sbjct: 177 AELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRE 236
Query: 215 ---LKSGDTNKIIFFAGVSRMKEIYVMAANYLQSSDWKSQPELLKSIISFYSKGKAPHLL 271
L + V ++ ++ A ++ + +S++ +
Sbjct: 237 CLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVR 296
Query: 272 ANFYVSCAQVEIDEFGNYEKGLGALNEAKRCLLKHNDSMYETLKSSVVEKLAEVEIDEFG 331
+ + + + + +E L+ LK AE + E
Sbjct: 297 SKERICHCFSKD---EKPVEAIRVCSEV----LQMEPDNVNALKD-----RAEAYLIE-E 343
Query: 332 NYEKGLGALNEAKRCLLKHNDSMYETLKSSVVE----KIAEVDKYLEMKRNQSFR 382
Y++ + A+ +++ + E L+ + + + K L +KRN +
Sbjct: 344 MYDEAIQDYETAQE-HNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQ 397
Score = 37.4 bits (87), Expect = 0.027
Identities = 21/129 (16%), Positives = 41/129 (31%), Gaps = 28/129 (21%)
Query: 642 LAMKYYEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAAYHLARQYENSGQFDEAIHF 701
LAM + A L D ++ +L TAA G+ DEA
Sbjct: 71 LAMGKSKAA------------LPDLTKVIQLK--MDFTAARLQRGHLLLKQGKLDEAEDD 116
Query: 702 YSVAGSCGNAVRLC-GQLDAVESIASELNVQSDQDLILKCASYFARREHHDRAVQMYAIA 760
+ ++ + + E+ + + Q L + + F + + A+
Sbjct: 117 FK------KVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGD-YTAAIAF---- 165
Query: 761 RRYDQALSL 769
D+ L +
Sbjct: 166 --LDKILEV 172
Score = 30.4 bits (69), Expect = 3.9
Identities = 20/139 (14%), Positives = 42/139 (30%), Gaps = 18/139 (12%)
Query: 642 LAMKYYEEARDYLSMVRVLC--FLQDFSRAAELANASGDTAAAYHLARQYENSGQFDEAI 699
L +EA D V ++ ++L + + A SG + AI
Sbjct: 105 LKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSD-EMQRLRSQALNAFGSGDYTAAI 163
Query: 700 HFYSVA-----------GSCGNAVRLCGQLD-AVESI--ASELNVQSDQDLILKCASYFA 745
F G+ A+ + AS+L + + K ++ +
Sbjct: 164 AFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYY 222
Query: 746 RREHHDRAVQMYAIARRYD 764
+ H+ ++ + D
Sbjct: 223 QLGDHELSLSEVRECLKLD 241
Score = 30.0 bits (68), Expect = 4.6
Identities = 7/59 (11%), Positives = 18/59 (30%), Gaps = 8/59 (13%)
Query: 73 YEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAAYHLARQYENSGQFDEAIHFYSVA 131
+ + S L + ++ L ++ +GQ +A+ + A
Sbjct: 2 HHHH--HHSSGVDLGTENLYFQSMADVEK------HLELGKKLLAAGQLADALSQFHAA 52
Score = 30.0 bits (68), Expect = 4.6
Identities = 7/59 (11%), Positives = 18/59 (30%), Gaps = 8/59 (13%)
Query: 647 YEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAAYHLARQYENSGQFDEAIHFYSVA 705
+ + S L + ++ L ++ +GQ +A+ + A
Sbjct: 2 HHHH--HHSSGVDLGTENLYFQSMADVEK------HLELGKKLLAAGQLADALSQFHAA 52
Score = 28.9 bits (65), Expect = 9.8
Identities = 17/86 (19%), Positives = 28/86 (32%), Gaps = 14/86 (16%)
Query: 632 QYIESTEDMDLAMKYYEEARDYLSMV---RVLCF---------LQDFSRAAELANASGDT 679
+Y ++T + MK +Y CF ++ S ++ +
Sbjct: 272 RYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME--PDNV 329
Query: 680 AAAYHLARQYENSGQFDEAIHFYSVA 705
A A Y +DEAI Y A
Sbjct: 330 NALKDRAEAYLIEEMYDEAIQDYETA 355
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide
repeat, response regulator helix-turn-HELX binding,
3-helix bundle; 2.30A {Bacillus subtilis}
Length = 383
Score = 40.2 bits (94), Expect = 0.003
Identities = 44/393 (11%), Positives = 113/393 (28%), Gaps = 76/393 (19%)
Query: 7 MKNGDIDRAIRMFEKAETHQQHVP----------------RMLLENTDKLEKYIIQSKDP 50
++ I A + + + + ++LE + LEK I+ +
Sbjct: 23 IRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPR 82
Query: 51 VLLKWWAQYIESTEDMDLAMKYYEEARDYLSMVRVLCFLQDFSRA-----------AELA 99
+ + L Y+ +++ A +
Sbjct: 83 LSDLLLEIDKKQARLTGLLEYYF-----NFFRGMYELDQREYLSAIKFFKKAESKLIFVK 137
Query: 100 NASGDTAAAYHLARQYENSGQFDEAIHFYSVAGSCGNAVRLCKEQALD--DQLWNLALSA 157
+ + ++ Y Q ++ + QA + + +
Sbjct: 138 DRIEKAEFFFKMSESYYYMKQTYFSMDYA--------------RQAYEIYKEHEAYNIRL 183
Query: 158 GPSEQIEAATYLETIEPDKAVLLYHKAGALHKALDLAFKL--TLSNSGLVFQI-----KA 210
+ A +L+ + + A+ + KA ++ +A + TL N GL A
Sbjct: 184 LQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDA 243
Query: 211 MKCLLKS----GDTNKIIFFAGVSRMKEIYVMAANYLQSSDWKSQPELLKSIISFYSKGK 266
+ ++ ++N + + +++ + + E +++ K
Sbjct: 244 IPYFKRAIAVFEESNILPSLP-----QAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAG 298
Query: 267 APHLLANFYVSCAQVEIDEFGNYEKGLGALNEAKRCLLKHNDSMYETLKSSVVEKLAEVE 326
L+ F + A+ L +Y L+ +A+
Sbjct: 299 DVIYLSEFEF------LKSLYLSGPDEEAIQGFFDFLESKM--LYADLEDF-AIDVAKYY 349
Query: 327 IDEFGNYEKGLGALNEAK--RCLLKHNDSMYET 357
+ N++K + + R L++ S+YE
Sbjct: 350 HER-KNFQKASAYFLKVEQVRQLIQGGVSLYEI 381
Score = 34.8 bits (80), Expect = 0.16
Identities = 15/147 (10%), Positives = 40/147 (27%), Gaps = 36/147 (24%)
Query: 639 DMDLAMKYYEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAAYH-LARQYENSGQFDE 697
+ A+ Y++ A E +N AY + + + G+ D+
Sbjct: 239 QYEDAIPYFKRAIAV----------------FEESNILPSLPQAYFLITQIHYKLGKIDK 282
Query: 698 AIHFYSVAGSCGNAVRLCGQLDAVESIASELN------VQSDQDLILKCASYFARREHHD 751
A ++S + + V ++ D++ I + + +
Sbjct: 283 AHEYHS------KGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYA 336
Query: 752 RAVQMYAIA-------RRYDQALSLIQ 771
+ + +A +
Sbjct: 337 DLEDFAIDVAKYYHERKNFQKASAYFL 363
Score = 32.5 bits (74), Expect = 0.85
Identities = 22/236 (9%), Positives = 58/236 (24%), Gaps = 46/236 (19%)
Query: 604 KSNKALKIITKQIILILIIYRVLLKWWAQYIESTEDMDLAMKYYEEARDYLSMVRVLCFL 663
S+ L+I KQ L ++ + Y + A+K++++A S +
Sbjct: 83 LSDLLLEIDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKA---ESKLI----- 134
Query: 664 QDFSRAAELANASGDTAAAYHLARQYENSGQFDEAIHFYSVAGSCGNAVRLCGQLDAVES 723
+ + + ++ Y Q ++ + A
Sbjct: 135 -------FVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKE-----HEAYNIR 182
Query: 724 IASELN----VQSDQDLILKCASYFAR-----REHHDRAVQ---------MYAIARRYDQ 765
+ + D S+F + + +Y+
Sbjct: 183 LLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYED 242
Query: 766 ALSLIQTKHVPLSEELADLLVPPESDDQRQVVLNTLGNCAAVQANYHLATKLFTQA 821
A+ + + + + EE + A + ++
Sbjct: 243 AIPYFK-RAIAVFEES-------NILPSLPQAYFLITQIHYKLGKIDKAHEYHSKG 290
Score = 30.6 bits (69), Expect = 3.3
Identities = 13/97 (13%), Positives = 26/97 (26%), Gaps = 22/97 (22%)
Query: 606 NKALKIITKQIILILIIYRVLLKWWAQYIESTEDMDLAMKYYEEARDYLSMVRVLCFLQD 665
+K + K +I + LK E + + E Y +
Sbjct: 288 SKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADL--------- 338
Query: 666 FSRAAELANASGDTAAAYHLARQYENSGQFDEAIHFY 702
+ A +A+ Y F +A ++
Sbjct: 339 ----EDFAI---------DVAKYYHERKNFQKASAYF 362
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein
structure initiative, PSI, center for eukaryotic
structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Length = 307
Score = 39.9 bits (93), Expect = 0.004
Identities = 33/226 (14%), Positives = 60/226 (26%), Gaps = 34/226 (15%)
Query: 643 AMKYYEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAAYHLARQYENSGQFDEAIHFY 702
A ++ +A YL + + D+ AA A ++N+ Q ++A Y
Sbjct: 10 AHEHIAKAEKYLKT-SFMKWKPDYDSAASEYA---------KAAVAFKNAKQLEQAKDAY 59
Query: 703 SVAGSC-GNAVRLCGQLDAVESIASELNVQSDQD----LILKCASYFARREHHDRAVQMY 757
N L A E L I K + + D A
Sbjct: 60 LQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMAL 119
Query: 758 AIA------RRYDQALSLIQTKHVPLSEELADLLVPPESDDQRQVVLNTLGNCAAVQANY 811
A +A+ L Q E E Q ++ Q +
Sbjct: 120 DRAGKLMEPLDLSKAVHLYQQAAAVFENE--------ERLRQAAELIGKASRLLVRQQKF 171
Query: 812 HLATKLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKV 857
A + ++ + K + + L +++ V
Sbjct: 172 DEAAASLQKEKSMYKEMEN-----YPTCYKKCIAQVLVQLHRADYV 212
Score = 39.1 bits (91), Expect = 0.006
Identities = 37/274 (13%), Positives = 79/274 (28%), Gaps = 71/274 (25%)
Query: 69 AMKYYEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAAYHLARQYENSGQFDEAIHFY 128
A ++ +A YL + + D+ AA A ++N+ Q ++A Y
Sbjct: 10 AHEHIAKAEKYLKT-SFMKWKPDYDSAASEYA---------KAAVAFKNAKQLEQAKDAY 59
Query: 129 --------------SVAGSCGNAVRLCK-----EQALDDQLWNLALSAGPSEQIEAATYL 169
A + A + K +A+ + AA L
Sbjct: 60 LQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMAL 119
Query: 170 -------ETIEPDKAVLLYHKAGALHKALDLAFKLTLSNSGLVFQIKAMKCLLKSGDTNK 222
E ++ KAV LY +A A+ + + +A + + K+
Sbjct: 120 DRAGKLMEPLDLSKAVHLYQQAAAVFENEE-------------RLRQAAELIGKASR--- 163
Query: 223 IIFFAGVSRMKEIYVMAANYLQSSDWKSQPELLKSIISFYSKGKAPHLLANFYVSCAQVE 282
+ V + +++ L+ S Y + + ++ V+
Sbjct: 164 ------------LLVRQQKFDEAA------ASLQKEKSMYKEMENYPTCYKKCIAQVLVQ 205
Query: 283 IDEFGNYEKGLGALNEAKRCLLKHNDSMYETLKS 316
+ +Y + E+ L+
Sbjct: 206 LHR-ADYVAAQKCVRESYSIPGFSGSEDCAALED 238
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 37.6 bits (86), Expect = 0.007
Identities = 8/34 (23%), Positives = 14/34 (41%), Gaps = 5/34 (14%)
Query: 249 KSQPELLKSIISFYSKGKAPHLLANFYVSCAQVE 282
K + L++ + Y+ AP L A +E
Sbjct: 19 KQALKKLQASLKLYADDSAPALAIK-----ATME 47
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell
division, protein binding; 1.10A {Mus musculus}
Length = 164
Score = 36.7 bits (86), Expect = 0.012
Identities = 27/186 (14%), Positives = 54/186 (29%), Gaps = 57/186 (30%)
Query: 639 DMDLAMKYYEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAAYH-LARQYENSGQFDE 697
+ A+ +E+ L + + E + + AY L Y G+F+
Sbjct: 24 NFRDAVIAHEQR---LLIAK------------EFGDKAA-ERIAYSNLGNAYIFLGEFET 67
Query: 698 AIHFYSVAGSCGNAVRLCGQLDAVESIASELNVQSDQDLILKCASYFARREHHDRAVQMY 757
A +Y + L QL A L + + + +++A+
Sbjct: 68 ASEYYK------KTLLLARQLKDRAVEAQSCY-----SL----GNTYTLLQDYEKAIDY- 111
Query: 758 AIARRYDQALSLIQTKHVPLSEELADLLVPPESDDQRQV--VLNTLGNCAAVQANYHLAT 815
+ + L++ Q E D+ +LGN N+ A
Sbjct: 112 -----HLKHLAIAQ-----------------ELKDRIGEGRACWSLGNAYTALGNHDQAM 149
Query: 816 KLFTQA 821
+
Sbjct: 150 HFAEKH 155
Score = 33.7 bits (78), Expect = 0.12
Identities = 27/170 (15%), Positives = 51/170 (30%), Gaps = 55/170 (32%)
Query: 65 DMDLAMKYYEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAAYH-LARQYENSGQFDE 123
+ A+ +E+ L + + E + + AY L Y G+F+
Sbjct: 24 NFRDAVIAHEQR---LLIAK------------EFGDKAA-ERIAYSNLGNAYIFLGEFET 67
Query: 124 AIHFYSVAGSCGNAVRLCKEQALDDQLWNLALSAGPSEQIEAAT-------YLETIEPDK 176
A +Y ++ L LA +EA + Y + +K
Sbjct: 68 ASEYY--------------KKTLL-----LARQLK-DRAVEAQSCYSLGNTYTLLQDYEK 107
Query: 177 AVLLYHKAGALHKAL----DLAFKLTLSNSGLVFQI-----KAMKCLLKS 217
A+ + K A+ + L + G + +AM K
Sbjct: 108 AIDYHLKHLAIAQELKDRIGEG--RACWSLGNAYTALGNHDQAMHFAEKH 155
Score = 29.8 bits (68), Expect = 2.7
Identities = 24/131 (18%), Positives = 39/131 (29%), Gaps = 39/131 (29%)
Query: 104 DTAAAYH-LARQYENSGQFDEAIHFYSVAGSCGNAVRLCKEQALDDQLWNLALSAGPSEQ 162
A+ L + G F +A+ + EQ L +A G +
Sbjct: 7 AQGRAFGNLGNTHYLLGNFRDAVIAH--------------EQRLL-----IAKEFG-DKA 46
Query: 163 IEAAT-------YLETIEPDKAVLLYHKAGALHKAL----DLAFKLTLSNSGLVFQI--- 208
E Y+ E + A Y K L + L A + + G + +
Sbjct: 47 AERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA--QSCYSLGNTYTLLQD 104
Query: 209 --KAMKCLLKS 217
KA+ LK
Sbjct: 105 YEKAIDYHLKH 115
>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin,
flavin, electron transfer, hydride transfer,
oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia
coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1
Length = 671
Score = 38.5 bits (90), Expect = 0.013
Identities = 27/177 (15%), Positives = 56/177 (31%), Gaps = 28/177 (15%)
Query: 890 LIATGSEVTPFPGIEVDEETIVSSTGALS--LKKGSVWGRLGAEVTAIEFMNAIGGMGID 947
L G + +E I SS +G R ++ ++ + G G+
Sbjct: 513 LSQPGESTSQNIAGFCNEWGIDSSLQQAGGLSPQGMQIPRSPRQIVMLQRKASKPGQGLG 572
Query: 948 GEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVG 1007
+ L +G++ G G ++ + + + L+ D +++C G
Sbjct: 573 KTTGWIHRTTLLSRGVKMIPGVSYQKIDDDGLHVVIN-------GETQVLAVDNVVICAG 625
Query: 1008 RRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIGDCIH-GPMLAHKAEDEG 1063
+ P L + + G + IG C + A +A +G
Sbjct: 626 QEPNR---ALAQ---PLIDSG------------KTVHLIGGCDVAMELDARRAIAQG 664
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin
ligase; 2.60A {Schizosaccharomyces pombe}
Length = 597
Score = 38.3 bits (89), Expect = 0.016
Identities = 25/193 (12%), Positives = 51/193 (26%), Gaps = 45/193 (23%)
Query: 8 KNGDIDRAIRMFEKA--------ETHQQHVPRMLL---ENTDKLEKYIIQSKDPVLLKWW 56
+ DRA +++A E Q V LL E D + K + +
Sbjct: 212 NLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFL 271
Query: 57 AQYIESTEDMDLAMKYYEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAAYHLARQYE 116
+ A DYLS + + A
Sbjct: 272 RSLYMLKLNKTSHEDELRRAEDYLS---------------SINGLEKSSDLLLCKADTLF 316
Query: 117 NSGQFDEAIHFYSVAGSCGNAVRLCKEQALDDQLWNLALSAGPSEQIEAATYLETIEPDK 176
+F + + + ++ + + ++ + A+ E+ E +K
Sbjct: 317 VRSRFIDVLAITT---------KILEIDPYNLDVYP----------LHLASLHESGEKNK 357
Query: 177 AVLLYHKAGALHK 189
L+ + H
Sbjct: 358 LYLISNDLVDRHP 370
Score = 34.8 bits (80), Expect = 0.16
Identities = 33/193 (17%), Positives = 57/193 (29%), Gaps = 49/193 (25%)
Query: 7 MKNGDIDRAIRMFEKA-----ETHQQHVPR-MLLENTDKLEK--------YIIQSKDPVL 52
G+ D+AI + A TH ++ M + Y + DP+L
Sbjct: 418 AIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLL 477
Query: 53 LKWWAQYIESTEDMDLAMKYYEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAAYH-L 111
L + DM A+ +++ A + + AA + L
Sbjct: 478 LNELGVVAFNKSDMQTAINHFQNALLL---------------VKKTQSNEKPWAATWANL 522
Query: 112 ARQYENSGQFDEAIHFYSVAGSCGNAVRLCKEQALDDQLWNLALSAGPSEQIEAATYLET 171
Y +D AI + + L A + +AL YL
Sbjct: 523 GHAYRKLKMYDAAIDALN------QGLLLSTNDA--NVHTAIAL-----------VYLHK 563
Query: 172 IEPDKAVLLYHKA 184
P A+ H++
Sbjct: 564 KIPGLAITHLHES 576
Score = 34.0 bits (78), Expect = 0.29
Identities = 18/133 (13%), Positives = 35/133 (26%), Gaps = 35/133 (26%)
Query: 69 AMKYYEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAAYHLARQYENSGQFDEAIHFY 128
+++A + ++ AA L G L Q+ G A +
Sbjct: 419 IEGEHDQA------------ISAYTTAARLF--QGTHLPYLFLGMQHMQLGNILLANEYL 464
Query: 129 SVAGSCGNAVRLCKEQALDDQLW-NLALSAGPSEQIEAA--TYLETIE---------PDK 176
++ L + D L L + A ++ A + +
Sbjct: 465 Q------SSYALFQY---DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPW 515
Query: 177 AVLLYHKAGALHK 189
A + A K
Sbjct: 516 AATWANLGHAYRK 528
Score = 33.7 bits (77), Expect = 0.33
Identities = 30/176 (17%), Positives = 57/176 (32%), Gaps = 47/176 (26%)
Query: 642 LAMKYYEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAAYHLARQYENSGQFDEAIH- 700
L + Y+ A + ++ +G+ A+ LA+ Y +G + A
Sbjct: 95 LMQQQYKCA------------AFVGEKVLDI---TGNPNDAFWLAQVYCCTGDYARAKCL 139
Query: 701 ------------FYSVAGSC-------GNAVRLCGQLDAVESIASELNVQSDQDLILKCA 741
+A C A+ L G+ + N QD +K
Sbjct: 140 LTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLE 199
Query: 742 SY--------FARREHHDRAVQMYAIARRYD----QALSLIQTKHVPLSEELADLL 785
+ + + DRA + Y A D +A + + H+ ++E DL+
Sbjct: 200 ASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLV 255
Score = 32.5 bits (74), Expect = 0.91
Identities = 17/137 (12%), Positives = 40/137 (29%), Gaps = 29/137 (21%)
Query: 68 LAMKYYEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAAYHLARQYENSGQFDEAIHF 127
L + Y+ A + ++ +G+ A+ LA+ Y +G + A
Sbjct: 95 LMQQQYKCA------------AFVGEKVLDI---TGNPNDAFWLAQVYCCTGDYARAKCL 139
Query: 128 YSVAG------SCGNAVRLCK------EQALDDQLWNLALSAGPSEQIEAATYLETIEPD 175
+ +C C + AL+ + I+ +
Sbjct: 140 LTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLE 199
Query: 176 KAVLLYHKAGALHKALD 192
+ + + G ++ L
Sbjct: 200 AS--MCYLRGQVYTNLS 214
Score = 32.1 bits (73), Expect = 1.2
Identities = 19/199 (9%), Positives = 47/199 (23%), Gaps = 61/199 (30%)
Query: 643 AMKYYEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAAYHLARQYENSGQFDEAIHFY 702
+++A + ++ AA L G L Q+ G A +
Sbjct: 419 IEGEHDQA------------ISAYTTAARLF--QGTHLPYLFLGMQHMQLGNILLANEYL 464
Query: 703 SVAGS-----------CGNAVRLCGQLD--------AVESIASELNVQSDQDLIL-KCAS 742
+ + G + A+ + + +
Sbjct: 465 QSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGH 524
Query: 743 YFARREHHDRAVQMYAIARRYDQALSLIQTKHVPLSEELADLLVPPESDDQRQVVLNTLG 802
+ + + +D A+ +Q L L +++ V +
Sbjct: 525 AYRKLKMYDAAIDAL------NQGLLL----------------STNDAN-----VHTAIA 557
Query: 803 NCAAVQANYHLATKLFTQA 821
+ LA ++
Sbjct: 558 LVYLHKKIPGLAITHLHES 576
Score = 31.7 bits (72), Expect = 1.3
Identities = 31/174 (17%), Positives = 47/174 (27%), Gaps = 43/174 (24%)
Query: 68 LAMKYYEEARDYLSMVRVLCFLQDFSRAAELANASGDTA--------AAYHLARQYENSG 119
LA + D+ + +L F + + AN Y + Y N
Sbjct: 155 LAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLS 214
Query: 120 QFDEAIHFYSVA-------------GSCGNAVRLCKEQALDDQL---------------- 150
FD A Y A + + +E L +L
Sbjct: 215 NFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSL 274
Query: 151 WNLALSAG--PSEQIEAATYLETIE--PDKAVLLYHKAGALHKA--LDLAFKLT 198
+ L L+ E A YL +I + LL KA L +T
Sbjct: 275 YMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAIT 328
Score = 30.6 bits (69), Expect = 3.5
Identities = 31/190 (16%), Positives = 53/190 (27%), Gaps = 51/190 (26%)
Query: 647 YEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAAYH-LARQYENSGQFDEAIHFYSVA 705
EAR Y FS+++ + A+ A + G+ D+AI Y+ A
Sbjct: 389 ISEARRY------------FSKSSTM---DPQFGPAWIGFAHSFAIEGEHDQAISAYTTA 433
Query: 706 GSC-----------GNAVRLCGQLD-AVESI--ASELNVQSDQDLILKCASYFARREHHD 751
G G + A E + + L Q D L+ + +
Sbjct: 434 ARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQ 492
Query: 752 RAVQMYAIARRYDQALSLIQTKHVPLSEELADLLVPPESDDQRQVVLNTLGNCAAVQANY 811
A+ + AL L++ ++ LG+ Y
Sbjct: 493 TAINH------FQNALLLVKK--------------TQSNEKPWAATWANLGHAYRKLKMY 532
Query: 812 HLATKLFTQA 821
A Q
Sbjct: 533 DAAIDALNQG 542
Score = 30.2 bits (68), Expect = 4.2
Identities = 24/122 (19%), Positives = 38/122 (31%), Gaps = 28/122 (22%)
Query: 73 YEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAAYH-LARQYENSGQFDEAIHFYSVA 131
EAR Y FS+++ + A+ A + G+ D+AI Y+
Sbjct: 389 ISEARRY------------FSKSSTM---DPQFGPAWIGFAHSFAIEGEHDQAISAYT-- 431
Query: 132 GSCGNAVRLCKEQALDDQLWNLALSAGPSEQI-EAATYLE---TIEPDKAVLLYHKAGAL 187
A RL + L L + I A YL+ + +LL
Sbjct: 432 ----TAARLFQGTHLP--YLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVA 485
Query: 188 HK 189
Sbjct: 486 FN 487
Score = 29.0 bits (65), Expect = 9.3
Identities = 20/169 (11%), Positives = 48/169 (28%), Gaps = 18/169 (10%)
Query: 554 NNSHYYHMAHSGDMKARGIEVEGV-KLNLETMMGTKSAAVKALTGGIAHLFKSNKALKII 612
+ S + E + V KLN T +A +++L + L+
Sbjct: 232 KCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRA 291
Query: 613 TKQIILILIIYRVLLKWWAQYIES---TEDMDLAMKYYEEAR--------DYLSMVRVLC 661
+ I + + ++ + + Y + L
Sbjct: 292 EDYLSSINGLEK-SSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLH 350
Query: 662 FLQDFSRAAELANASGDT----AAAYH-LARQYENSGQFDEAIHFYSVA 705
+ ++ ++N D A + + Y + EA ++S +
Sbjct: 351 ESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKS 399
>1fcd_A Flavocytochrome C sulfide dehydrogenase (flavin- binding subunit);
electron transport(flavocytochrome); HET: FAD HEM; 2.53A
{Allochromatium vinosum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 401
Score = 37.8 bits (88), Expect = 0.016
Identities = 24/150 (16%), Positives = 52/150 (34%), Gaps = 23/150 (15%)
Query: 935 IEFMNAIGGMGIDGEVAKQFQRILG----KQGMQFKLGTKVTGASKSGDNITVTIENVKD 990
+ +++ + +K ++R+ G +++ G A D + +E
Sbjct: 185 VIILDSSQTFSKQSQFSKGWERLYGFGTENAMIEWHPGPD--SAVVKVDGGEMMVETAF- 241
Query: 991 PTKKEELSCDALLVCVGRRP--YTHNLGLEEIGIEKDEKGRVPVNSR-FQ-TVIPNIFAI 1046
+E D + + +R GL ++ G PV+ + F+ ++ I I
Sbjct: 242 ---GDEFKADVINLIPPQRAGKIAQIAGLT------NDAGWCPVDIKTFESSIHKGIHVI 292
Query: 1047 GDCIHG---PMLAHKAEDEGIVCVEGIAGD 1073
GD P + A +G V +
Sbjct: 293 GDASIANPMPKSGYSANSQGKVAAAAVVVL 322
>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX),
oxidative demethylation of N-methyl-L-tryptophan, FAD,
flavoenzyme; HET: FAD; 3.2A {Escherichia coli}
Length = 372
Score = 37.7 bits (88), Expect = 0.018
Identities = 14/74 (18%), Positives = 26/74 (35%), Gaps = 10/74 (13%)
Query: 950 VAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRR 1009
K + ++ + G VT D +T+ T E +VC G
Sbjct: 151 AIKTWIQLAKEAGCAQLFNCPVTAIRHDDDGVTIE-------TADGEYQAKKAIVCAG-- 201
Query: 1010 PYTHNLGLEEIGIE 1023
+ +L L E+ ++
Sbjct: 202 TWVKDL-LPELPVQ 214
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response,
DNA repair, gene regulation; 2.05A {Mus musculus}
Length = 474
Score = 37.7 bits (87), Expect = 0.021
Identities = 24/164 (14%), Positives = 48/164 (29%), Gaps = 18/164 (10%)
Query: 549 SKALLNNSHYYHMAHSGDMKARGIEVEGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKA 608
S L+ + G RG + + + ++ V L F+++
Sbjct: 11 SSGLVPRGSHMASMTGGQQMGRGSMMADEEEEAKHVLQKLQGLVDRLYCFRDSYFETHSV 70
Query: 609 LKIITKQIILILIIYRVLLKWWAQYIESTEDMDLAMKYYEE-ARDYLSMVRVLCFLQDFS 667
KQ + + ++ + M+ + + A+ + + L D+S
Sbjct: 71 EDAGRKQQDVQ-----------EEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYS 119
Query: 668 RAAE------LANASGDTAAAYHLARQYENSGQFDEAIHFYSVA 705
AE + A L Y G A +S A
Sbjct: 120 PEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGA 163
Score = 35.8 bits (82), Expect = 0.072
Identities = 31/183 (16%), Positives = 53/183 (28%), Gaps = 28/183 (15%)
Query: 18 MFEKAETHQQHVPRMLLENTDKLEKY--IIQSKDPVLLKWWAQYIESTEDMDLAMKYYEE 75
M E +HV + L D+L + V + + E+M+ ++ EE
Sbjct: 35 MMADEEEEAKHVLQKLQGLVDRLYCFRDSYFETHSVE-DAGRKQQDVQEEMEKTLQQMEE 93
Query: 76 ARD--------YLSMVRVLCFLQDFSRAAE------LANASGDTAAAYHLARQYENSGQF 121
+ + L D+S AE + A L Y G
Sbjct: 94 VLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDV 153
Query: 122 DEAIHFYSVAGSCGNAVRLCKEQALDDQLWNLALSAGPSEQIEAATYLETIEPDKAVLLY 181
A +S A+ CK L NL++ + + + +V
Sbjct: 154 TSAHTCFS------GALTHCKN---KVSLQNLSMVLRQLQTDSGDEHSRHVM--DSVRQA 202
Query: 182 HKA 184
A
Sbjct: 203 KLA 205
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin,
type III secretion, protein binding; 1.85A {Pseudomonas
aeruginosa} PDB: 2xcc_A
Length = 142
Score = 35.9 bits (83), Expect = 0.021
Identities = 14/66 (21%), Positives = 22/66 (33%), Gaps = 8/66 (12%)
Query: 89 LQDFSRAAELANASGDTAAAYHLARQYENSGQFDEAIHFYSVAGSCGNAVRLCKEQALDD 148
LQ +S A + + +H A + G D A + +A L Q +
Sbjct: 72 LQSYSYGALMD--INEPRFPFHAAECHLQLGDLDGAESGFY------SARALAAAQPAHE 123
Query: 149 QLWNLA 154
L A
Sbjct: 124 ALAARA 129
Score = 32.4 bits (74), Expect = 0.31
Identities = 10/43 (23%), Positives = 16/43 (37%), Gaps = 2/43 (4%)
Query: 663 LQDFSRAAELANASGDTAAAYHLARQYENSGQFDEAIHFYSVA 705
LQ +S A + + +H A + G D A + A
Sbjct: 72 LQSYSYGALMD--INEPRFPFHAAECHLQLGDLDGAESGFYSA 112
Score = 31.6 bits (72), Expect = 0.64
Identities = 12/85 (14%), Positives = 23/85 (27%), Gaps = 21/85 (24%)
Query: 104 DTAAAYHLARQYENSGQFDEAIHFYSVAGSCGNAVRLCKEQALDDQLW-NLALSAGPSEQ 162
Y L +G++D+A + LC D + + L
Sbjct: 17 TLEQLYALGFNQYQAGKWDDAQKIFQ---------ALCMLDHYDARYFLGL--------- 58
Query: 163 IEAATYLETIEPDKAVLLYHKAGAL 187
A ++A+ Y +
Sbjct: 59 --GACRQSLGLYEQALQSYSYGALM 81
Score = 29.7 bits (67), Expect = 2.9
Identities = 12/87 (13%), Positives = 24/87 (27%), Gaps = 21/87 (24%)
Query: 678 DTAAAYHLARQYENSGQFDEAIHFYSVAGSCGNAVRLCGQLDAVESIASELNVQSDQDLI 737
Y L +G++D+A + L+ D
Sbjct: 17 TLEQLYALGFNQYQAGKWDDAQKIF--------------------QALCMLD-HYDARYF 55
Query: 738 LKCASYFARREHHDRAVQMYAIARRYD 764
L + +++A+Q Y+ D
Sbjct: 56 LGLGACRQSLGLYEQALQSYSYGALMD 82
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus,
protein transport, translocation, transport, transport
protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Length = 661
Score = 37.4 bits (86), Expect = 0.031
Identities = 39/238 (16%), Positives = 66/238 (27%), Gaps = 36/238 (15%)
Query: 33 LLENTDKLEKYIIQSKDPVLLKWWAQYIESTEDMDLAMKYYEEARDYLSMVRVLCFLQDF 92
L + +D A Y +S D A +YL ++ + D
Sbjct: 337 LFKIDSSTRLTKKPKRDIRFANILANYTKSFRYSDP-----RVAVEYLVLITLNEGPTDV 391
Query: 93 SRA----AELANASGDTAAAYHLARQYEN--SGQFDEAIHFYSVAGSCGNAVRLCKEQAL 146
EL + + + G +E L +
Sbjct: 392 ELCHEALRELVLETKEFTVLLGKIGRDGARIPGVIEERQ-------------PLLHVRDE 438
Query: 147 DDQLWNLALSAGPSEQIEAATYLETIEPDKAVLLYHKAGALHKALDLAFKLTLSNSGLVF 206
+ L + A A E ++LLY A + L L LS+ +
Sbjct: 439 KEFLHTITEQA-------ARRADEDGRIYDSILLYQLAEEYDIVITLVNSL-LSD--TLS 488
Query: 207 QIKAMKCLLKSGDTNKIIFFAGVSRMKEIYVMAANYLQSSDWKSQP--ELLKSIISFY 262
+ L+ D ++ RM IY A + K++ LL +I S
Sbjct: 489 ASDLDQPLVGPDDNSETNPVLLARRMASIYFDNAGISRQIHVKNKEICMLLLNISSIR 546
Score = 36.6 bits (84), Expect = 0.044
Identities = 24/167 (14%), Positives = 52/167 (31%), Gaps = 30/167 (17%)
Query: 628 KWWAQYIESTEDMDLAMKYYEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAAYHLAR 687
A Y +S D A +YL ++ + D E L
Sbjct: 358 NILANYTKSFRYSDP-----RVAVEYLVLITLNEGPTDVELCHEA------------LRE 400
Query: 688 QYENSGQFDEAIHFYSVAGSCGNAVRLCGQLDAVESIASELNVQSD-QDLILKCASYFAR 746
+ +F + G+ R+ G ++ + + + + + + A
Sbjct: 401 LVLETKEFTVLLGKIGRDGA-----RIPGVIEERQPLLHVRDEKEFLHTITEQAARRADE 455
Query: 747 REHHDRAVQMYAIARRYDQALSLIQTKHVPLSEELADLLVPPESDDQ 793
++ +Y +A YD ++L ++ L+D L + D
Sbjct: 456 DGRIYDSILLYQLAEEYDIVITL-------VNSLLSDTLSASDLDQP 495
Score = 36.2 bits (83), Expect = 0.058
Identities = 18/123 (14%), Positives = 41/123 (33%), Gaps = 28/123 (22%)
Query: 686 ARQYENSGQFDEAIHFYSVAGSCGNAVRL-CGQLDAV--------ESIASELNVQSD-QD 735
AR+ + G+ ++I Y +A + L L + + N +++
Sbjct: 450 ARRADEDGRIYDSILLYQLAEEYDIVITLVNSLLSDTLSASDLDQPLVGPDDNSETNPVL 509
Query: 736 LILKCASYFARREHHDRAVQM-----------------YAIARRYDQALSLI-QTKHVPL 777
L + AS + R + + +++ + LS + +P
Sbjct: 510 LARRMASIYFDNAGISRQIHVKNKEICMLLLNISSIRELYFNKQWQETLSQMELLDLLPF 569
Query: 778 SEE 780
S+E
Sbjct: 570 SDE 572
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR),
beta-hairpin, alpha-solenoi transport protein; 2.60A
{Bos taurus}
Length = 291
Score = 36.6 bits (84), Expect = 0.034
Identities = 25/174 (14%), Positives = 47/174 (27%), Gaps = 30/174 (17%)
Query: 34 LENTDKLEKYIIQSKDPVL--LKWWAQYIESTEDMDLAMKYYEEARD----------YLS 81
+ I S P L ++ +A+Y+ S D + + L
Sbjct: 47 QRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLM 106
Query: 82 MVRVLCFLQDFSRAAELANASGDTAAAYHLARQYENSGQFDEAIHFYSVAGSCGNAVRLC 141
+ + Q+ A + + + D A
Sbjct: 107 AASIYFYDQNPDAALRTLHQGDSLECMAMTVQILLKLDRLDLARKELKKM---------- 156
Query: 142 KEQALDDQLWNLA-----LSAGPSEQIEAATYLE---TIEPDKAVLLYHKAGAL 187
++Q D L LA L+AG + +A + +LL +A
Sbjct: 157 QDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACH 210
Score = 32.0 bits (72), Expect = 0.91
Identities = 9/89 (10%), Positives = 22/89 (24%), Gaps = 10/89 (11%)
Query: 627 LKWWAQYIESTEDMDLAMKYYEEARD----------YLSMVRVLCFLQDFSRAAELANAS 676
++ +A+Y+ S D + + L + + Q+ A +
Sbjct: 68 VRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQG 127
Query: 677 GDTAAAYHLARQYENSGQFDEAIHFYSVA 705
+ + D A
Sbjct: 128 DSLECMAMTVQILLKLDRLDLARKELKKM 156
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone,
endoplasmic reticulum, TPR repeat, UNF protein response;
2.51A {Mus musculus}
Length = 359
Score = 36.9 bits (86), Expect = 0.036
Identities = 21/129 (16%), Positives = 39/129 (30%), Gaps = 28/129 (21%)
Query: 642 LAMKYYEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAAYHLARQYENSGQFDEAIHF 701
LAM + A L D ++ L TAA G+ DEA
Sbjct: 48 LAMGKSKAA------------LPDLTKVIALK--MDFTAARLQRGHLLLKQGKLDEAEDD 93
Query: 702 YSVAGSCGNAVRLC-GQLDAVESIASELNVQSDQDLILKCASYFARREHHDRAVQMYAIA 760
+ ++ + + E+ + + Q L + F + + A+
Sbjct: 94 FK------KVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGAD-YTAAITF---- 142
Query: 761 RRYDQALSL 769
D+ L +
Sbjct: 143 --LDKILEV 149
Score = 36.1 bits (84), Expect = 0.050
Identities = 26/214 (12%), Positives = 60/214 (28%), Gaps = 25/214 (11%)
Query: 7 MKNGDIDRAIRMFEKA-----ETHQQHVPRMLLENTDKLEKYIIQSKDPVLLKWWAQYIE 61
+K G +D A F+K ++ L D++++ Q+ D Y
Sbjct: 82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGA---DYTA 138
Query: 62 STEDMDLAMKYY-EEARDYLSMVRVLCFLQDFSRAAELANA-----SGDTAAAYHLARQY 115
+ +D ++ +A + +A A S +T A Y ++ Y
Sbjct: 139 AITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLY 198
Query: 116 ENSGQFDEAIHFYSVAGSCGNAVRLCKEQALDDQLWNL--ALSAGPSEQIEAATYLETIE 173
G + ++ ++L ++ + + + A +
Sbjct: 199 YQLGDHELSLSEVR------ECLKLDQDHK---RCFAHYKQVKKLNKLIESAEELIRDGR 249
Query: 174 PDKAVLLYHKAGALHKALDLAFKLTLSNSGLVFQ 207
A Y ++ + F
Sbjct: 250 YTDATSKYESVMKTEPSVAEYTVRSKERICHCFS 283
Score = 34.9 bits (81), Expect = 0.13
Identities = 24/133 (18%), Positives = 36/133 (27%), Gaps = 25/133 (18%)
Query: 68 LAMKYYEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAAYHLARQYENSGQFDEAIHF 127
LAM + A L D ++ L TAA G+ DEA
Sbjct: 48 LAMGKSKAA------------LPDLTKVIALK--MDFTAARLQRGHLLLKQGKLDEAEDD 93
Query: 128 YSVAGSC-----------GNAVRLCKEQALDDQLWNLALSAGPSEQIEAATYLETIEPDK 176
+ V+ + Q L Q + A + I + +
Sbjct: 94 FKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWD 153
Query: 177 AVLLYHKAGALHK 189
A L +A K
Sbjct: 154 AELRELRAECFIK 166
Score = 29.9 bits (68), Expect = 5.0
Identities = 10/81 (12%), Positives = 22/81 (27%), Gaps = 13/81 (16%)
Query: 638 EDMDLAMKYYEEA--------RDYLSMVRVLCFLQDFSRAAELANA-----SGDTAAAYH 684
D A+ + ++ + +A A S +T A Y
Sbjct: 134 ADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYK 193
Query: 685 LARQYENSGQFDEAIHFYSVA 705
++ Y G + ++
Sbjct: 194 ISTLYYQLGDHELSLSEVREC 214
>3q15_A PSP28, response regulator aspartate phosphatase H;
tetratricopeptide repeat, 3-helix bundle, phosphorelay
signa transduction, phosphatase; 2.19A {Bacillus
subtilis}
Length = 378
Score = 36.7 bits (85), Expect = 0.038
Identities = 26/139 (18%), Positives = 48/139 (34%), Gaps = 35/139 (25%)
Query: 10 GDIDRAIRMFEKA-----ETHQQHVPRML---------LENTDKLEKYIIQSKDPVLLKW 55
GD A+ F+KA E +P++L T K ++I +
Sbjct: 236 GDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGL------- 288
Query: 56 WAQYIESTEDMDLAMKY------YEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAAY 109
+I + + Y+E D + +L + + + A + A
Sbjct: 289 --DHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEAC------AR 340
Query: 110 HLARQYENSGQFDEAIHFY 128
A +E+S F++A FY
Sbjct: 341 SAAAVFESSCHFEQAAAFY 359
Score = 34.4 bits (79), Expect = 0.18
Identities = 50/353 (14%), Positives = 106/353 (30%), Gaps = 74/353 (20%)
Query: 7 MKNGDIDRAIRMFEKAETHQQHVPRMLLENTDKLEKYIIQSKDPVLLKWWAQYIESTEDM 66
++ + A + + E Q + E+ D L Y L+ + Q +
Sbjct: 23 IRQFSVPDAEILKAEVEQDIQQ----MEEDQDLLIYYS-------LMCFRHQLM------ 65
Query: 67 DLAMKYYEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAAYHLARQYENSGQFDEAIH 126
+ Y E + Y + V L+ + + + + ++ EAI
Sbjct: 66 ---LDYLEPGKTYGNRPTVTELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIG 122
Query: 127 FYSVAGSCGNAVRLCKEQALDDQLWNLALSAGPSEQIEAATYLETIEPDKAVLLYHKAGA 186
+Y +A L + +A + K Y+
Sbjct: 123 YY--------------REAEK------ELPFVSDDIEKAEFH------FKVAEAYYHMKQ 156
Query: 187 LHKALDLAFK-LTLSNSGLVFQIKAMKCLLKSGDTNKIIFFAGVSRMKEIYVMAANYLQS 245
H ++ + L + + ++ I+ ++ L AG + Y A +L++
Sbjct: 157 THVSMYHILQALDIYQNHPLYSIRTIQSL---------FVIAGNYDDFKHYDKALPHLEA 207
Query: 246 SDWKSQPELLKSIISFYSKGKAPHLLANFYVSCAQVEIDEFGNYEKGLGALNEAKRCLLK 305
+ EL I + + +AN Y D G+ + + +A K
Sbjct: 208 A-----LELAMDIQNDRFIAISLLNIANSY--------DRSGDDQMAVEHFQKA----AK 250
Query: 306 HNDSMYETLKSSVVEKLAEVEIDEFGNYEKGLGALNEAKRCLLKHNDSMYETL 358
+ L V+ L+ G +K + E + + Y+ L
Sbjct: 251 VSREKVPDLLPKVLFGLSWTLCKA-GQTQKAFQFIEEGLDHITARSHKFYKEL 302
Score = 33.2 bits (76), Expect = 0.39
Identities = 24/195 (12%), Positives = 48/195 (24%), Gaps = 35/195 (17%)
Query: 642 LAMKYYEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAAYHLARQYENSGQFDEAIHF 701
L + Y E + Y + V L+ + + + + ++ EAI +
Sbjct: 64 LMLDYLEPGKTYGNRPTVTELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGY 123
Query: 702 YSVAGSCGNAVRLCGQLDAVESIASELNVQSDQDLILKCASYFARREHHDRAVQMYAIAR 761
Y A + + A K A + + ++
Sbjct: 124 YR------EAEKELPFVSDDIEKAEFHF---------KVAEAYYHMKQTHVSMYH----- 163
Query: 762 RYDQALSLIQTKHVPLSEELADLLVPPESDDQRQVVLNTLGNCAAVQANYHLATKLFTQA 821
QAL I H S L + +Y A A
Sbjct: 164 -ILQALD-IYQNHPLYSIRTIQ-------------SLFVIAGNYDDFKHYDKALPHLEAA 208
Query: 822 GDKGVKLNLETMMGT 836
+ + + + +
Sbjct: 209 LELAMDIQNDRFIAI 223
Score = 31.7 bits (72), Expect = 1.4
Identities = 22/204 (10%), Positives = 55/204 (26%), Gaps = 45/204 (22%)
Query: 639 DMDLAMKYYEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAAYH-LARQYENSGQFDE 697
++M + +A D S T + +A Y++ +D+
Sbjct: 156 QTHVSMYHILQALDIYQ---------------NHPLYSIRTIQSLFVIAGNYDDFKHYDK 200
Query: 698 AIHFYSVAGSCGNAVRLCGQLDAVESIASELN----VQSDQDLILKCASYF------ARR 747
A+ A+ L + IA L +F +R
Sbjct: 201 ALPHLE------AALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSRE 254
Query: 748 EHHDRAVQ-MYAIAR------RYDQALSLIQTKHVPLSEELADLLVPPESDDQRQVVLNT 800
+ D + ++ ++ + +A I+ + + + + + + L
Sbjct: 255 KVPDLLPKVLFGLSWTLCKAGQTQKAFQFIE-EGLDHITARSH-----KFYKELFLFLQA 308
Query: 801 LGNCAAVQANYHLATKLFTQAGDK 824
+ + H F +
Sbjct: 309 VYKETVDERKIHDLLSYFEKKNLH 332
Score = 31.3 bits (71), Expect = 1.7
Identities = 14/97 (14%), Positives = 29/97 (29%), Gaps = 22/97 (22%)
Query: 606 NKALKIITKQIILILIIYRVLLKWWAQYIESTEDMDLAMKYYEEARDYLSMVRVLCFLQD 665
+ L IT + + L+ + + + Y+E+ + +
Sbjct: 285 EEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYI--------- 335
Query: 666 FSRAAELANASGDTAAAYHLARQYENSGQFDEAIHFY 702
A A +E+S F++A FY
Sbjct: 336 ----EACAR---------SAAAVFESSCHFEQAAAFY 359
Score = 29.8 bits (67), Expect = 5.7
Identities = 18/147 (12%), Positives = 38/147 (25%), Gaps = 35/147 (23%)
Query: 638 EDMDLAMKYYEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAAYHLARQYENSGQFDE 697
D +A++++++A + + L+ +GQ +
Sbjct: 236 GDDQMAVEHFQKAAKV----------------SREKVPDLLPKVLFGLSWTLCKAGQTQK 279
Query: 698 AIHFYSVAGSCGNAVRLCGQLDAVESIASELN------VQSDQDLILKCASYFARREHHD 751
A F + L D+ I SYF ++ H
Sbjct: 280 AFQFIE------EGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHA 333
Query: 752 RAVQMYAIA-------RRYDQALSLIQ 771
A ++QA + +
Sbjct: 334 YIEACARSAAAVFESSCHFEQAAAFYR 360
>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome,
mesaconate, oxidoreductase; HET: HEM FAD; 1.50A
{Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4
d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A*
1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A*
1q9i_A* 1lj1_A*
Length = 571
Score = 37.0 bits (86), Expect = 0.038
Identities = 17/93 (18%), Positives = 28/93 (30%), Gaps = 24/93 (25%)
Query: 823 DKGVKLNLETMMGTKSAA---------------VKALTGGI----AHLFKSNKVTQL--N 861
G L MMG S V+ L L + + ++ +
Sbjct: 225 AMGADLTDVGMMGGASVNRAHRPTGGAGVGAHVVQVLYDNAVKRNIDLRMNTRGIEVLKD 284
Query: 862 GHGKITGPNTVTVIKSDGSTEEVKTKNILIATG 894
G + G + V VK +++ATG
Sbjct: 285 DKGTVKG---ILVKGMYKGYYWVKADAVILATG 314
>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein
structure initiative, TB structural genomics consortium,
TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis}
SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*
Length = 456
Score = 36.4 bits (84), Expect = 0.047
Identities = 16/66 (24%), Positives = 27/66 (40%), Gaps = 5/66 (7%)
Query: 988 VKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNSRFQTVIPNIFAIG 1047
KD ++EEL ++ VG R + + + D+ G +P PN + +G
Sbjct: 304 AKDTGEREELPAQLVVRSVGYRG----VPTPGLPFD-DQSGTIPNVGGRINGSPNEYVVG 358
Query: 1048 DCIHGP 1053
GP
Sbjct: 359 WIKRGP 364
Score = 29.8 bits (67), Expect = 5.6
Identities = 17/99 (17%), Positives = 37/99 (37%), Gaps = 12/99 (12%)
Query: 821 AGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQLNGHGKITG-----------P 869
A K K N++ + G + + F ++ + ++ G K+
Sbjct: 240 AVGKVCKQNIKVLRGYADREPRPGHRRMVFRFLTSPI-EIKGKRKVERIVLGRNELVSDG 298
Query: 870 NTVTVIKSDGSTEEVKTKNILIATGSEVTPFPGIEVDEE 908
+ K G EE+ + ++ + G P PG+ D++
Sbjct: 299 SGRVAAKDTGEREELPAQLVVRSVGYRGVPTPGLPFDDQ 337
>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase
110 kDa subunit...; thiocarbamate crosslink, covalent
inhibitor, gylcosyltransfe inhibitor, O-GLCNAC
transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A*
3pe4_A*
Length = 723
Score = 35.9 bits (82), Expect = 0.081
Identities = 39/198 (19%), Positives = 74/198 (37%), Gaps = 33/198 (16%)
Query: 10 GDIDRAIRMFEKAETHQQHVPRM------LLENTDKLEKYIIQSKDPVLLKWWAQYIEST 63
G+I+ A+R++ KA +L+ KL++ + + + I
Sbjct: 23 GNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEAL---------MHYKEAIR-- 71
Query: 64 EDMDLAMKYYEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAAYHLARQYENSGQFDE 123
A Y M V LQ ++RA ++ A D A +LA +++SG E
Sbjct: 72 ISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFAD--AHSNLASIHKDSGNIPE 129
Query: 124 AIHFYSVA-----------GSCGNAVRLCKEQALDDQLWNLALSAGPSEQIEAATYLETI 172
AI Y A + + +++ + D+ +S +Q+E ++
Sbjct: 130 AIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVA-DQLEKNRLP-SV 187
Query: 173 EPDKAVLLYHKAGALHKA 190
P + +LY + KA
Sbjct: 188 HPHHS-MLYPLSHGFRKA 204
Score = 32.9 bits (74), Expect = 0.68
Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Query: 641 DLAMKYYEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAAYHLARQYENSGQFDEAIH 700
A Y M V LQ ++RA ++ A D A +LA +++SG EAI
Sbjct: 75 TFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFAD--AHSNLASIHKDSGNIPEAIA 132
Query: 701 FYSVA 705
Y A
Sbjct: 133 SYRTA 137
Score = 31.3 bits (70), Expect = 2.2
Identities = 16/102 (15%), Positives = 31/102 (30%), Gaps = 14/102 (13%)
Query: 673 ANASGDTAAAYH-LARQYENSGQFDEAIHFYSVAGSC-----------GNAVRLCGQLD- 719
+ A + + LA G +EA+ Y A + ++ G+L
Sbjct: 2 PGSCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQE 61
Query: 720 AVESIASELNVQSDQ-DLILKCASYFARREHHDRAVQMYAIA 760
A+ + + D + + A+Q Y A
Sbjct: 62 ALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRA 103
Score = 30.2 bits (67), Expect = 4.3
Identities = 22/116 (18%), Positives = 42/116 (36%), Gaps = 17/116 (14%)
Query: 663 LQDFSRAAELANASGDTAAAYHLARQYENSGQFDEAIHFYSVAGSC-----------GNA 711
++ + +A E+ AA +LA + G+ EA+ Y A GN
Sbjct: 29 VRLYRKALEVF--PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNT 86
Query: 712 VRLCGQLD-AVESI--ASELNVQSDQDLILKCASYFARREHHDRAVQMYAIARRYD 764
++ + A++ A ++N + D AS + A+ Y A +
Sbjct: 87 LKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK 141
Score = 29.4 bits (65), Expect = 8.1
Identities = 20/100 (20%), Positives = 34/100 (34%), Gaps = 13/100 (13%)
Query: 99 ANASGDTAAAYH-LARQYENSGQFDEAIHFYSVAGSCGNAVRLCKEQALDDQLWNLALSA 157
+ A + + LA G +EA+ Y A+ + E A NLA
Sbjct: 2 PGSCPTHADSLNNLANIKREQGNIEEAVRLYR------KALEVFPEFA--AAHSNLASVL 53
Query: 158 GPSEQI-EAATYLET---IEPDKAVLLYHKAGALHKALDL 193
++ EA + + I P A + L + D+
Sbjct: 54 QQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDV 93
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A
{Encephalitozoon cuniculi} PDB: 2uy1_B
Length = 493
Score = 35.6 bits (81), Expect = 0.081
Identities = 53/494 (10%), Positives = 141/494 (28%), Gaps = 94/494 (19%)
Query: 7 MKNGDIDRAIRMFEKAETHQQHVP---------RMLLENTDKLEK---YIIQSKDPVLLK 54
+ D +F + ++ R + + KL + + + +
Sbjct: 25 YMSKDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDS 84
Query: 55 W--WAQYI-------ESTEDMDLAMKYYEEA------------RDYLSMVRVLCFLQDFS 93
+ + +YI + ++ Y A +D+ + L +
Sbjct: 85 YGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKK 144
Query: 94 RAAELANASGDTAAAYHLARQYENSGQFDEAIHFYSVAGSCGNA---------VRLCKEQ 144
+ + Y + A + G +
Sbjct: 145 IVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNY 204
Query: 145 ALD-----DQLWNLALSAGPSEQIEAATYLETI-EPDKAVLLYHKAGALHKALDLAFKLT 198
LD ++++ + YL I + +KA + + + + L+
Sbjct: 205 ILDSFYYAEEVY-----------FFYSEYLIGIGQKEKAKKVVERGIEMSDGMFLSLYY- 252
Query: 199 LSNSGLVFQIKAMKCLLKSGDTNKIIFFAGVSRMKEIYVMAANYLQSSDWKSQPELLKSI 258
GLV +A+ LK + A KE+ ++ N+L ++ + L+
Sbjct: 253 ----GLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHL---NYVLKKRGLELF 305
Query: 259 ISFYSKGKAPHLLANFYVSCAQVEIDEFGN-------YEKGLGALNEAKRCLLKHNDSMY 311
+ + + + ++ CA +E G+ + GL ++ +
Sbjct: 306 RKLFIELGNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFL-FL 364
Query: 312 ETLKS-----SVVEKLAEVEI--DEFGNYEKGLGALNEAKRCLLKHNDSMYETLKSSVVE 364
+ ++ ++L + D YE +G++ + + + K ++
Sbjct: 365 LRIGDEENARALFKRLEKTSRMWDSMIEYEFMVGSMELFRELVDQ---------KMDAIK 415
Query: 365 KIAEVDKYLEMKRNQSFRSSNTDIILPVEKWTLLSLA--RVLEGIEYKVGKFPFAANSRA 422
A + + N ++ + L L ++ + P +
Sbjct: 416 ADAILPPLPPREHNVQMEGILGRYHCFLDSFNFLDLKIRDNSRLLDEFMENLPKISQQNN 475
Query: 423 KTNN-DTDGFVKVL 435
+N + + +L
Sbjct: 476 VLSNLRVEKVISLL 489
Score = 32.5 bits (73), Expect = 0.77
Identities = 14/121 (11%), Positives = 29/121 (23%), Gaps = 14/121 (11%)
Query: 5 ETMKNGDIDRAIRMFEKAETHQQHVPRMLL------------ENTDKLEKYIIQSKDPVL 52
E G +F + EN L K + ++ +
Sbjct: 329 EYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRLEKTSR--M 386
Query: 53 LKWWAQYIESTEDMDLAMKYYEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAAYHLA 112
+Y M+L + ++ D + +L L ++ G
Sbjct: 387 WDSMIEYEFMVGSMELFRELVDQKMDAIKADAILPPLPPREHNVQMEGILGRYHCFLDSF 446
Query: 113 R 113
Sbjct: 447 N 447
>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor
2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus
SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A*
1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A*
3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A*
1l9d_A* 1zov_A*
Length = 389
Score = 35.4 bits (82), Expect = 0.091
Identities = 12/74 (16%), Positives = 30/74 (40%), Gaps = 10/74 (13%)
Query: 950 VAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRR 1009
+ ++ + +G + T+V S D++ + T + D L+V +G
Sbjct: 152 CIRAYRELAEARGAKVLTHTRVEDFDISPDSVKIE-------TANGSYTADKLIVSMG-- 202
Query: 1010 PYTHNLGLEEIGIE 1023
+ L L ++ ++
Sbjct: 203 AWNSKL-LSKLNLD 215
>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD;
1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*
Length = 397
Score = 35.5 bits (82), Expect = 0.093
Identities = 16/74 (21%), Positives = 27/74 (36%), Gaps = 10/74 (13%)
Query: 950 VAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRR 1009
+ G + G VT D ++VT T + +++ G
Sbjct: 155 TLAALFTLAQAAGATLRAGETVTELVPDADGVSVT-------TDRGTYRAGKVVLACG-- 205
Query: 1010 PYTHNLGLEEIGIE 1023
PYT++L LE +G
Sbjct: 206 PYTNDL-LEPLGAR 218
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 34.7 bits (79), Expect = 0.095
Identities = 15/96 (15%), Positives = 34/96 (35%), Gaps = 25/96 (26%)
Query: 3 EEETMKNGDIDRAIRMFEKAETHQQHVPRMLLENTDKLEKYIIQSKDPVLLKWWAQYIES 62
E E+++ ++ R+ E + M E +K +K + ++ W + E
Sbjct: 83 EPESIRKWREEQRKRLQELDAASK----VMEQEWREKAKKDL---EE-----WNQRQSEQ 130
Query: 63 TEDMDLAMKYYEEARDYLSMVRVLCFLQDFSRAAEL 98
E + + ++A F Q A++
Sbjct: 131 VEKNKINNRIADKA-----------FYQQ--PDADI 153
>3k9i_A BH0479 protein; putative protein binding protein, structural
genomics, joint for structural genomics, JCSG; 2.71A
{Bacillus halodurans}
Length = 117
Score = 33.2 bits (76), Expect = 0.13
Identities = 19/123 (15%), Positives = 35/123 (28%), Gaps = 31/123 (25%)
Query: 89 LQDFSRAAELANASGDTAAAY-HLARQYENSGQFDEAIHFYSVAGSCGNAVRLCKEQAL- 146
+ + +A D A Y L + G++ +A +
Sbjct: 10 VPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVL--------------ANGVK 55
Query: 147 ----DDQLW-NLAL---SAGPSEQIEAATYLETI----EPDKAVLLYHKAGALH-KALDL 193
L A+ + G E + L I D+ + Y +A + LD
Sbjct: 56 QFPNHQALRVFYAMVLYNLGRYE--QGVELLLKIIAETSDDETIQSYKQAILFYADKLDE 113
Query: 194 AFK 196
+K
Sbjct: 114 TWK 116
Score = 29.3 bits (66), Expect = 2.2
Identities = 7/44 (15%), Positives = 15/44 (34%), Gaps = 1/44 (2%)
Query: 663 LQDFSRAAELANASGDTAAAY-HLARQYENSGQFDEAIHFYSVA 705
+ + +A D A Y L + G++ +A +
Sbjct: 10 VPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANG 53
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein
superhelix, transc activator; 1.45A {Escherichia coli}
SCOP: a.118.8.2
Length = 373
Score = 35.0 bits (80), Expect = 0.14
Identities = 24/191 (12%), Positives = 50/191 (26%), Gaps = 27/191 (14%)
Query: 639 DMDLAMKYYEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAAYHLARQYENSGQFDEA 698
+ D A + + A + L A L G+ +
Sbjct: 29 NPDEAERLAKLALEELPP----------------GWFYSRIVATSVLGEVLHCKGELTRS 72
Query: 699 IHFYSVAGSCGNAVRLCGQLDAVESIASELNVQSDQDLILKCASYFAR-----REHHDRA 753
+ A + A+ S+ + + Q + + E H
Sbjct: 73 LALMQQTEQM--ARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQ 130
Query: 754 VQMYAIARRYDQALSLIQTKHVPLSEELADL---LVPPESDDQRQVVLNTLGNCAAVQAN 810
+ M+ R +A L + +E A ++ Q+ L L C+ + +
Sbjct: 131 LPMHEFLVRI-RAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGD 189
Query: 811 YHLATKLFTQA 821
A +
Sbjct: 190 LDNARSQLNRL 200
Score = 29.2 bits (65), Expect = 8.2
Identities = 16/130 (12%), Positives = 31/130 (23%), Gaps = 29/130 (22%)
Query: 65 DMDLAMKYYEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAAYHLARQYENSGQFDEA 124
+ D A + + A + L A L G+ +
Sbjct: 29 NPDEAERLAKLALEELPP----------------GWFYSRIVATSVLGEVLHCKGELTRS 72
Query: 125 IHFYSVAGSCGNAVRLCKEQALDDQLWNLALSAGPSEQIEAATYLETIEPDKAVLLYHKA 184
+ + ++ A +W+ AL + ++ A KA
Sbjct: 73 LALM----------QQTEQMARQHDVWHYALWS---LIQQSEILFAQGFLQTAWETQEKA 119
Query: 185 GALHKALDLA 194
L L
Sbjct: 120 FQLINEQHLE 129
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide
repeat, TPR, chapero virulence; 2.15A {Shigella
flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Length = 151
Score = 33.6 bits (77), Expect = 0.14
Identities = 20/103 (19%), Positives = 31/103 (30%), Gaps = 20/103 (19%)
Query: 88 FLQDFSRAAELANASGDTAAA-YHLARQYENSGQFDEAIHFYSVAGSCGNAVRLCKEQAL 146
+ + ++ D Y A + N G+ +EA F+ LC
Sbjct: 18 AINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFR---------FLCIYDFY 68
Query: 147 DDQLWNLALSAGPSEQIEAATYLETIEPDKAVLLYHKAGALHK 189
+ AA Y + +A LY A AL K
Sbjct: 69 NVDYI----------MGLAAIYQIKEQFQQAADLYAVAFALGK 101
Score = 32.8 bits (75), Expect = 0.21
Identities = 6/63 (9%), Positives = 17/63 (26%), Gaps = 14/63 (22%)
Query: 643 AMKYYEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAAYHLARQYENSGQFDEAIHFY 702
+ +++A ++ A L D +H + +A +
Sbjct: 82 IKEQFQQA------------ADLYAVAFALG--KNDYTPVFHTGQCQLRLKAPLKAKECF 127
Query: 703 SVA 705
+
Sbjct: 128 ELV 130
Score = 32.1 bits (73), Expect = 0.39
Identities = 17/167 (10%), Positives = 41/167 (24%), Gaps = 62/167 (37%)
Query: 7 MKNGDIDRAIRMFEKAETHQQHVPRMLLENTDKLEKYIIQSKDPVLLKWWAQYIESTEDM 66
G I+ A F + D + + +
Sbjct: 47 YNKGRIEEAEVFFRFLCIY-----------------------DFYNVDYIMGLAAIYQ-- 81
Query: 67 DLAMKYYEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAAYHLARQYENSGQFDEAIH 126
+ +++A ++ A L D +H + +A
Sbjct: 82 --IKEQFQQA------------ADLYAVAFAL--GKNDYTPVFHTGQCQLRLKAPLKAKE 125
Query: 127 FYSVAGSCGNAVRLCKEQALDDQLWNLALSAGPSEQIEAATYLETIE 173
+ ++ ++ L +I+A +YL+ I+
Sbjct: 126 CFE------LVIQHSNDEKL---------------KIKAQSYLDAIQ 151
Score = 30.9 bits (70), Expect = 1.1
Identities = 16/104 (15%), Positives = 33/104 (31%), Gaps = 22/104 (21%)
Query: 662 FLQDFSRAAELANASGDTAAA-YHLARQYENSGQFDEAIHFYSVAGSCGNAVRLCGQLDA 720
+ + ++ D Y A + N G+ +EA F+
Sbjct: 18 AINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFF------------------ 59
Query: 721 VESIASELNVQSDQDLILKCASYFARREHHDRAVQMYAIARRYD 764
+ + D I+ A+ + +E +A +YA+A
Sbjct: 60 --RFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG 100
>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura
genomics, protein structure initiative; HET: FAD NDP;
2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5
PDB: 2gvc_A* 1vqw_A*
Length = 447
Score = 34.6 bits (79), Expect = 0.17
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 966 KLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGR--RPYTHNL-GLEE 1019
KL T V K + VT + K + + DA+ +C G PY N+ GL+E
Sbjct: 133 KLATDVLDIEKKDGSWVVTYKGTKAGSPISKDIFDAVSICNGHYEVPYIPNIKGLDE 189
>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron
transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus}
SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A*
1e1n_A* 1e6e_A*
Length = 460
Score = 34.8 bits (80), Expect = 0.17
Identities = 14/68 (20%), Positives = 23/68 (33%), Gaps = 8/68 (11%)
Query: 988 VKDPTKKEELSCDALLVCVGRRPYTHNLGLE-EIGIEKDEK-GRVPVNSRFQTVIPNIFA 1045
E+L C +L +G + + + D K G VP +P ++
Sbjct: 311 AVPTGDVEDLPCGLVLSSIGYK------SRPIDPSVPFDPKLGVVPNMEGRVVDVPGLYC 364
Query: 1046 IGDCIHGP 1053
G GP
Sbjct: 365 SGWVKRGP 372
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha
helix, antivirus, antiviral protein; 2.80A {Homo
sapiens}
Length = 472
Score = 34.1 bits (78), Expect = 0.26
Identities = 14/121 (11%), Positives = 37/121 (30%), Gaps = 22/121 (18%)
Query: 8 KNGDIDRAIRMFEKAETHQQHVPRMLLENTDKLEKYIIQSKDPVLLKWWAQYIESTEDMD 67
+ + D+AI + +KA + + L + + + + E +
Sbjct: 259 RKDEPDKAIELLKKALEYIPNNA-YLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIG 317
Query: 68 LAMKYYEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAAYHLARQYENSGQFDEAIHF 127
A+ + ++A LA + + Q++EA ++
Sbjct: 318 HAVAHLKKA---------------------DEANDNLFRVCSILASLHALADQYEEAEYY 356
Query: 128 Y 128
+
Sbjct: 357 F 357
Score = 33.4 bits (76), Expect = 0.48
Identities = 30/199 (15%), Positives = 55/199 (27%), Gaps = 30/199 (15%)
Query: 7 MKNGDIDRAIRMFEKAETHQQHVPRMLLENTDKLEKYIIQSKDPVLLKWWAQYIESTEDM 66
+RA FEKA L + E + L W + + +
Sbjct: 149 CGGNQNERAKVCFEKA----------LEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPL 198
Query: 67 DLAMKY---YEEARDYLSMV--RVLCFLQDFSRAAE-----LANASGDTAAAYHLARQYE 116
A++ + + L++ ++ ++ + L A G T A+ Y
Sbjct: 199 RQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYR 258
Query: 117 NSGQFDEAIHFYSVAGSCGNAVRLCKEQALDDQLWNLALS-AGPSEQIEAATYLETIEPD 175
+ D+AI A+ A + Q+
Sbjct: 259 RKDEPDKAIELLK------KALEYIPNNA--YLHCQIGCCYRAKVFQVMNLRENGMYGKR 310
Query: 176 KAVLLYHKA-GALHKALDL 193
K + L A L KA +
Sbjct: 311 KLLELIGHAVAHLKKADEA 329
Score = 30.7 bits (69), Expect = 2.9
Identities = 30/189 (15%), Positives = 55/189 (29%), Gaps = 37/189 (19%)
Query: 8 KNGDIDRAIRMFEKAETHQQHVPRMLLENTDKLEKYIIQSKDPVLLKWWAQYIESTEDMD 67
G + A+ KAE + +++ + L W Y M
Sbjct: 63 LKGQNEAALECLRKAE--------------ELIQQEHADQAEIRSLVTWGNYAWVYYHM- 107
Query: 68 LAMKYYEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAAYHLARQYENSGQFDEAIHF 127
+ + Y+ V+ +C + FS + + D + R Q + A
Sbjct: 108 ---GRLSDVQIYVDKVKHVC--EKFSSPYRIESPELDCEEGW--TRLKCGGNQNERAKVC 160
Query: 128 YSVAGSCGNAVRLCKEQALDDQLWNLALSA----GPSEQIEAATYLE---TIEPDKAVLL 180
+ A+ + + LA+++ A L + PD L
Sbjct: 161 FE------KALEKKPKNP--EFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLK 212
Query: 181 YHKAGALHK 189
A LHK
Sbjct: 213 VLLALKLHK 221
Score = 29.5 bits (66), Expect = 6.6
Identities = 14/65 (21%), Positives = 18/65 (27%), Gaps = 21/65 (32%)
Query: 638 EDMDLAMKYYEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAAYHLARQYENSGQFDE 697
E+ K EEA L A G T A+ Y + D+
Sbjct: 227 EEEGEGEKLVEEA---------------------LEKAPGVTDVLRSAAKFYRRKDEPDK 265
Query: 698 AIHFY 702
AI
Sbjct: 266 AIELL 270
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown
function, SEL1-like repeats; 1.68A {Escherichia coli}
Length = 490
Score = 34.2 bits (79), Expect = 0.26
Identities = 23/139 (16%), Positives = 49/139 (35%), Gaps = 20/139 (14%)
Query: 638 EDMDLAMKYYEEA---RDYLSMVRV-LCFL------QDFSRAAEL---ANASGDTAAAYH 684
E+ A++++ +A + + + L +D +AA A G +AA
Sbjct: 345 EEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQ 404
Query: 685 LARQYENSGQ-----FDEAIHFYSVAGSCGNAVRLCGQLDAVESIASELNVQSDQDLILK 739
L Y G + +A ++ A + + + E + +Q + L +
Sbjct: 405 LGEIYYY-GLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAKQLQQAELLSQQ 463
Query: 740 CASYFARREHHDRAVQMYA 758
+A E R ++ A
Sbjct: 464 YIEKYA-PEAWARMQKLKA 481
Score = 30.3 bits (69), Expect = 3.6
Identities = 14/91 (15%), Positives = 37/91 (40%), Gaps = 19/91 (20%)
Query: 65 DMDLAMKYYEEA---RDYLSMVRV-LCFL------QDFSRAA---ELANASGDTAAAYHL 111
+ ++ ++Y ++ D L + + + QD++++ + G++ A + L
Sbjct: 202 NDAISAQWYRKSATSGDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRL 261
Query: 112 ARQYENSGQ-----FDEAIHFYSVAGSCGNA 137
E G +A+ +Y + GN+
Sbjct: 262 GYILEQ-GLAGAKEPLKALEWYRKSAEQGNS 291
Score = 30.3 bits (69), Expect = 3.6
Identities = 14/91 (15%), Positives = 37/91 (40%), Gaps = 19/91 (20%)
Query: 639 DMDLAMKYYEEA---RDYLSMVRV-LCFL------QDFSRAA---ELANASGDTAAAYHL 685
+ ++ ++Y ++ D L + + + QD++++ + G++ A + L
Sbjct: 202 NDAISAQWYRKSATSGDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRL 261
Query: 686 ARQYENSGQ-----FDEAIHFYSVAGSCGNA 711
E G +A+ +Y + GN+
Sbjct: 262 GYILEQ-GLAGAKEPLKALEWYRKSAEQGNS 291
Score = 29.9 bits (68), Expect = 4.5
Identities = 16/92 (17%), Positives = 33/92 (35%), Gaps = 19/92 (20%)
Query: 64 EDMDLAMKYYEEA---RDYLSMVRV-LCFL------QDFSRAAEL---ANASGDTAAAYH 110
E+ A++++ +A + + + L +D +AA A G +AA
Sbjct: 345 EEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQ 404
Query: 111 LARQYENSGQ-----FDEAIHFYSVAGSCGNA 137
L Y G + +A ++ A +
Sbjct: 405 LGEIYYY-GLGVERDYVQAWAWFDTASTNDMN 435
Score = 29.9 bits (68), Expect = 4.9
Identities = 10/56 (17%), Positives = 17/56 (30%), Gaps = 9/56 (16%)
Query: 90 QDFSRAAEL---ANASGDTAAAYHLARQYENSGQ-----FDEAIHFYSVAGSCGNA 137
+ E SG+ A L +Y G +A+ ++ A G
Sbjct: 21 ALGNVNLEQLKQKAESGEAKAQLELGYRYFQ-GNETTKDLTQAMDWFRRAAEQGYT 75
Score = 29.9 bits (68), Expect = 4.9
Identities = 10/56 (17%), Positives = 17/56 (30%), Gaps = 9/56 (16%)
Query: 664 QDFSRAAEL---ANASGDTAAAYHLARQYENSGQ-----FDEAIHFYSVAGSCGNA 711
+ E SG+ A L +Y G +A+ ++ A G
Sbjct: 21 ALGNVNLEQLKQKAESGEAKAQLELGYRYFQ-GNETTKDLTQAMDWFRRAAEQGYT 75
Score = 29.5 bits (67), Expect = 6.8
Identities = 10/54 (18%), Positives = 20/54 (37%), Gaps = 6/54 (11%)
Query: 90 QDFSRAAEL---ANASGDTAAAYHLARQYENSGQ---FDEAIHFYSVAGSCGNA 137
++ +A + GD A +L Y G +A+ ++ A + G
Sbjct: 310 KNREQAISWYTKSAEQGDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEK 363
Score = 29.5 bits (67), Expect = 6.8
Identities = 10/54 (18%), Positives = 20/54 (37%), Gaps = 6/54 (11%)
Query: 664 QDFSRAAEL---ANASGDTAAAYHLARQYENSGQ---FDEAIHFYSVAGSCGNA 711
++ +A + GD A +L Y G +A+ ++ A + G
Sbjct: 310 KNREQAISWYTKSAEQGDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEK 363
Score = 29.5 bits (67), Expect = 7.3
Identities = 15/91 (16%), Positives = 30/91 (32%), Gaps = 19/91 (20%)
Query: 65 DMDLAMKYYEEA---RDYLSMVRV-LCFL------QDFSRAAEL---ANASGDTAAAYHL 111
D A+ +Y++A + + + + D + + + A G + +
Sbjct: 94 DYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSM 153
Query: 112 ARQYENSGQ-----FDEAIHFYSVAGSCGNA 137
Y G + A +YS A GN
Sbjct: 154 GDAYFE-GDGVTRDYVMAREWYSKAAEQGNV 183
Score = 29.5 bits (67), Expect = 7.3
Identities = 15/91 (16%), Positives = 30/91 (32%), Gaps = 19/91 (20%)
Query: 639 DMDLAMKYYEEA---RDYLSMVRV-LCFL------QDFSRAAEL---ANASGDTAAAYHL 685
D A+ +Y++A + + + + D + + + A G + +
Sbjct: 94 DYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSM 153
Query: 686 ARQYENSGQ-----FDEAIHFYSVAGSCGNA 711
Y G + A +YS A GN
Sbjct: 154 GDAYFE-GDGVTRDYVMAREWYSKAAEQGNV 183
Score = 29.2 bits (66), Expect = 7.8
Identities = 18/93 (19%), Positives = 38/93 (40%), Gaps = 19/93 (20%)
Query: 63 TEDMDLAMKYYEEA---RDYLSMVRV-LCFL------QDFSRAAEL---ANASGDTAAAY 109
T D +A ++Y +A + S ++ + ++ + +A+ + SGD
Sbjct: 164 TRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSGDELGQL 223
Query: 110 HLARQYENSGQ-----FDEAIHFYSVAGSCGNA 137
HLA Y G + ++ +S + GN+
Sbjct: 224 HLADMYYF-GIGVTQDYTQSRVLFSQSAEQGNS 255
Score = 29.2 bits (66), Expect = 7.8
Identities = 18/93 (19%), Positives = 38/93 (40%), Gaps = 19/93 (20%)
Query: 637 TEDMDLAMKYYEEA---RDYLSMVRV-LCFL------QDFSRAAEL---ANASGDTAAAY 683
T D +A ++Y +A + S ++ + ++ + +A+ + SGD
Sbjct: 164 TRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSGDELGQL 223
Query: 684 HLARQYENSGQ-----FDEAIHFYSVAGSCGNA 711
HLA Y G + ++ +S + GN+
Sbjct: 224 HLADMYYF-GIGVTQDYTQSRVLFSQSAEQGNS 255
Score = 29.2 bits (66), Expect = 9.1
Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 9/56 (16%)
Query: 90 QDFSRAAEL---ANASGDTAAAYHLARQYENSGQ-----FDEAIHFYSVAGSCGNA 137
+D ++A + A G T A Y L +Y N G+ + +A+ +Y A G
Sbjct: 57 KDLTQAMDWFRRAAEQGYTPAEYVLGLRYMN-GEGVPQDYAQAVIWYKKAALKGLP 111
Score = 29.2 bits (66), Expect = 9.1
Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 9/56 (16%)
Query: 664 QDFSRAAEL---ANASGDTAAAYHLARQYENSGQ-----FDEAIHFYSVAGSCGNA 711
+D ++A + A G T A Y L +Y N G+ + +A+ +Y A G
Sbjct: 57 KDLTQAMDWFRRAAEQGYTPAEYVLGLRYMN-GEGVPQDYAQAVIWYKKAALKGLP 111
>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM
FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3
c.3.1.4 d.168.1.1
Length = 566
Score = 33.9 bits (78), Expect = 0.28
Identities = 13/86 (15%), Positives = 26/86 (30%), Gaps = 28/86 (32%)
Query: 811 YHLATKLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQL--NGHGKITG 868
+ L A ++G+ L + +V +L N + G
Sbjct: 250 PEIIDTLRKAAKEQGIDTRLNS-----------------------RVVKLVVNDDHSVVG 286
Query: 869 PNTVTVIKSDGSTEEVKTKNILIATG 894
V + K++++ATG
Sbjct: 287 ---AVVHGKHTGYYMIGAKSVVLATG 309
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat,
TPR; 3.00A {Mus musculus}
Length = 365
Score = 33.5 bits (77), Expect = 0.34
Identities = 14/79 (17%), Positives = 26/79 (32%), Gaps = 3/79 (3%)
Query: 53 LKWWAQYIESTEDMDLAMKYYEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAAYHLA 112
++W + E+M + E ++ + V V + + E N D A+
Sbjct: 16 TEFWDKMQAEWEEMA-RRNWISENQEAQNQVTVSASEKGYYFHTE--NPFKDWPGAFEEG 72
Query: 113 RQYENSGQFDEAIHFYSVA 131
+ G I F A
Sbjct: 73 LKRLKEGDLPVTILFMEAA 91
Score = 33.5 bits (77), Expect = 0.34
Identities = 14/79 (17%), Positives = 26/79 (32%), Gaps = 3/79 (3%)
Query: 627 LKWWAQYIESTEDMDLAMKYYEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAAYHLA 686
++W + E+M + E ++ + V V + + E N D A+
Sbjct: 16 TEFWDKMQAEWEEMA-RRNWISENQEAQNQVTVSASEKGYYFHTE--NPFKDWPGAFEEG 72
Query: 687 RQYENSGQFDEAIHFYSVA 705
+ G I F A
Sbjct: 73 LKRLKEGDLPVTILFMEAA 91
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein
transport; 3.00A {Saccharomyces cerevisiae}
Length = 514
Score = 33.6 bits (77), Expect = 0.38
Identities = 25/190 (13%), Positives = 53/190 (27%), Gaps = 23/190 (12%)
Query: 9 NGDIDRAIRMFEKAETHQQHVPRMLLENTDKLEKYIIQSKDPVLLKWWAQYIESTEDMDL 68
+ +A R+FE+ L + + ED+
Sbjct: 209 DESFTKAARLFEEQL---DKNNEDEKLKEKLAISLEHTGIFKFLKN---DPLGAHEDIKK 262
Query: 69 AMKYYEEARDYLSMVRVLCFLQDFSRAAELANAS----GDTAAAY-HLARQYENSGQFDE 123
A++ + Y+ M ++ D + + + + ++ Y H + +D+
Sbjct: 263 AIELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQ 322
Query: 124 AIHFYSVAGSCGNAVRLCKEQALDDQLWNLALSAGPSEQIEAA--TYLETIE--PDKAVL 179
A + A L E LA A + + + E P+ +
Sbjct: 323 AGKDFD------KAKELDPENI--FPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEV 374
Query: 180 LYHKAGALHK 189
A L
Sbjct: 375 PNFFAEILTD 384
Score = 30.5 bits (69), Expect = 3.2
Identities = 40/275 (14%), Positives = 85/275 (30%), Gaps = 45/275 (16%)
Query: 104 DTAAAYH-LARQYENSGQFDEAIHFYSVAGSCGNAVRLCKEQALDDQLW-NLALSAGPSE 161
A A Q+ + ++D+AI +Y+ A+ L + D + NL+
Sbjct: 4 KYALALKDKGNQFFRNKKYDDAIKYYN------WALELKE----DPVFYSNLSACYVSVG 53
Query: 162 QIEAA--TYLETIE--PDKAVLLYHKAGALHK-----------------------ALDLA 194
++ + +E PD + +L +A A +++
Sbjct: 54 DLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPM 113
Query: 195 FKLTLSNSGLVFQIKAMKCLLKSGDTNKIIFFAGVSRMKEIYVMAANYLQSSDWKSQPEL 254
+ L+ + + + + T + KE N + S +
Sbjct: 114 LERNLNKQAMSKLKEKFGDIDTATATPTELSTQ---PAKERKDKQENLPSVTSMASFFGI 170
Query: 255 LKSIISFYSKGKAPHLLANFYVSCAQVEIDEFGNYEKGLGALNEAKRCLLKHNDSMYETL 314
K ++F + ++ + + +Y+K + +A R + D E
Sbjct: 171 FKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDE 230
Query: 315 KSSVVEKLAEVEIDEFGNYEKGLGALNEAKRCLLK 349
K EKLA G ++ A + K
Sbjct: 231 KLK--EKLAISLEHT-GIFKFLKNDPLGAHEDIKK 262
Score = 30.5 bits (69), Expect = 3.7
Identities = 14/107 (13%), Positives = 23/107 (21%), Gaps = 7/107 (6%)
Query: 599 IAHLFKSNKALKIITKQIILILIIYRVLLKWWAQYIESTEDMDLAMKYYEEARDYLSMVR 658
+A F K ++ Y S E D A + + +A
Sbjct: 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQ- 222
Query: 659 VLCFLQDFSRAAELANASGDTAAAYHLARQYENSGQFDEAIHFYSVA 705
L + +L + H A A
Sbjct: 223 ----LDKNNEDEKLKEKLAI--SLEHTGIFKFLKNDPLGAHEDIKKA 263
Score = 29.3 bits (66), Expect = 6.9
Identities = 10/77 (12%), Positives = 29/77 (37%), Gaps = 5/77 (6%)
Query: 632 QYIESTEDMDLAMKYYEEARDYLSMVRVLCFLQDFSRAAELANAS----GDTAAAY-HLA 686
+ + ED+ A++ + Y+ M ++ D + + + + ++ Y H
Sbjct: 252 DPLGAHEDIKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRG 311
Query: 687 RQYENSGQFDEAIHFYS 703
+ +D+A +
Sbjct: 312 QMNFILQNYDQAGKDFD 328
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting
complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin,
ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Length = 330
Score = 33.0 bits (76), Expect = 0.44
Identities = 21/200 (10%), Positives = 49/200 (24%), Gaps = 38/200 (19%)
Query: 8 KNGDIDRAIRMFEKAETHQQHVPR------MLLENTDKLEK--------YIIQSKDPVLL 53
+ D+A+ + A + + T+ + I +DP ++
Sbjct: 137 VESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVM 196
Query: 54 KWWAQYIESTEDMDLAMKYYEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAAYHLAR 113
+ A K++ +A L+ +L
Sbjct: 197 HEVGVVAFQNGEWKTAEKWFLDA------------LEKIKAIGNEVTVDKWEPLLNNLGH 244
Query: 114 QYENSGQFDEAIHFYSVAGSCGNAVRLCKEQALDDQLWNLALSAGPSEQI-EAATYLET- 171
++ EA+ ++ A+ L + A + A Y T
Sbjct: 245 VCRKLKKYAEALDYHR------QALVLIPQNA--STYSAIGYIHSLMGNFENAVDYFHTA 296
Query: 172 --IEPDKAVLLYHKAGALHK 189
+ D + +
Sbjct: 297 LGLRRDDTFSVTMLGHCIEM 316
Score = 32.3 bits (74), Expect = 0.89
Identities = 24/159 (15%), Positives = 54/159 (33%), Gaps = 41/159 (25%)
Query: 663 LQDFSRAAELANASGDTAAAYHLARQYENSGQFDEAIHFYSVAGSCGNAVRLCGQLDAVE 722
+ FS+A +A D + + +G++ A ++ A L+ ++
Sbjct: 179 ERFFSQALSIA--PEDPFVMHEVGVVAFQNGEWKTAEKWFLDA------------LEKIK 224
Query: 723 SIASELNVQSDQDLILKCASYFARREHHDRAVQMYAIARRYDQALSLIQTKHVPLSEELA 782
+I +E+ V + L+ + + + A+ + QAL L
Sbjct: 225 AIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYH------RQALVL------------- 265
Query: 783 DLLVPPESDDQRQVVLNTLGNCAAVQANYHLATKLFTQA 821
+P + + +G ++ N+ A F A
Sbjct: 266 ---IPQNAS-----TYSAIGYIHSLMGNFENAVDYFHTA 296
Score = 31.9 bits (73), Expect = 1.1
Identities = 23/137 (16%), Positives = 39/137 (28%), Gaps = 36/137 (26%)
Query: 8 KNGDIDRAIRMFEKAETHQQHVPRMLLENTDKLEKYIIQSKDPVLLKWWAQYI------E 61
+NG+ A + F A LEK + + KW
Sbjct: 205 QNGEWKTAEKWFLDA-----------------LEKIKAIGNEVTVDKWEPLLNNLGHVCR 247
Query: 62 STEDMDLAMKYYEEARD--------YLSMVRVLCFLQDFSRAAE-----LANASGDTAAA 108
+ A+ Y+ +A Y ++ + + +F A + L DT +
Sbjct: 248 KLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSV 307
Query: 109 YHLARQYENSGQFDEAI 125
L E EA
Sbjct: 308 TMLGHCIEMYIGDSEAY 324
Score = 31.5 bits (72), Expect = 1.6
Identities = 20/124 (16%), Positives = 36/124 (29%), Gaps = 28/124 (22%)
Query: 71 KYYEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAAYH-LARQYENSGQFDEAIHFYS 129
E AR Y S+A L A+ + + D+A+ Y
Sbjct: 105 HKNEHARRY------------LSKATTLEK---TYGPAWIAYGHSFAVESEHDQAMAAYF 149
Query: 130 VAGSCGNAVRLCKEQALDDQLWNLALSAGPSEQI-EAATYLET---IEPDKAVLLYHKAG 185
A +L K L + + L G + A + I P+ +++
Sbjct: 150 ------TAAQLMKGCHL--PMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGV 201
Query: 186 ALHK 189
+
Sbjct: 202 VAFQ 205
Score = 30.7 bits (70), Expect = 2.5
Identities = 30/192 (15%), Positives = 49/192 (25%), Gaps = 49/192 (25%)
Query: 645 KYYEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAAYH-LARQYENSGQFDEAIHFYS 703
E AR Y S+A L A+ + + D+A+ Y
Sbjct: 105 HKNEHARRY------------LSKATTLEK---TYGPAWIAYGHSFAVESEHDQAMAAYF 149
Query: 704 VAGSC-----------GNAVRLCGQLD-AVESI--ASELNVQSDQDLILKCASYFARREH 749
A G L A A + D ++ + +
Sbjct: 150 TAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGE 208
Query: 750 HDRAVQMYAIARRYDQALSLIQTKHVPLSEELADLLVPPESDDQRQVVLNTLGNCAAVQA 809
A + + AL E + + D+ + +LN LG+
Sbjct: 209 WKTAEKW------FLDAL------------EKIKAIGNEVTVDKWEPLLNNLGHVCRKLK 250
Query: 810 NYHLATKLFTQA 821
Y A QA
Sbjct: 251 KYAEALDYHRQA 262
Score = 29.6 bits (67), Expect = 5.3
Identities = 13/64 (20%), Positives = 22/64 (34%), Gaps = 16/64 (25%)
Query: 643 AMKYYEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAAYH-LARQYENSGQFDEAIHF 701
+K Y EA L +A L A+ Y + + G F+ A+ +
Sbjct: 248 KLKKYAEA------------LDYHRQALVLI---PQNASTYSAIGYIHSLMGNFENAVDY 292
Query: 702 YSVA 705
+ A
Sbjct: 293 FHTA 296
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio
parahaemolyticus RIMD 22 structural genomics, PSI-2,
protein structure initiative; HET: MES; 2.14A {Vibrio
parahaemolyticus}
Length = 176
Score = 32.2 bits (73), Expect = 0.51
Identities = 15/130 (11%), Positives = 32/130 (24%), Gaps = 12/130 (9%)
Query: 645 KYYEEARDYLSMVRVLCFLQDFSRAAE-----LANASGDTAAAYHLARQYENSGQFDEAI 699
+ ++ + L + ++A A + QF+ A
Sbjct: 8 QLLKQVSELLQ-------QGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQ 60
Query: 700 HFYSVAGSCGNAVRLCGQLDAVESIASELNVQSDQDLILKCASYFARREHHDRAVQMYAI 759
+ + +E + L + A+ E Y
Sbjct: 61 ELLATIPLEYQDNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQ 120
Query: 760 ARRYDQALSL 769
R ++AL L
Sbjct: 121 VGRDEEALEL 130
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus
thuringiensis serovar ISRAELE35646}
Length = 293
Score = 32.8 bits (74), Expect = 0.51
Identities = 14/131 (10%), Positives = 41/131 (31%), Gaps = 7/131 (5%)
Query: 1 MKEEETMKNGDIDRAIRMFEKAETHQQHVPRMLLENTDKLEKYIIQSKDPVLLKWWAQYI 60
E + + + ++ +L+K + Q + +
Sbjct: 99 WNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE 158
Query: 61 ESTEDMDLAMKYYEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAAYHLARQYENSGQ 120
+ ++ Y ++ D ++L L+ E D Y+ A+ +
Sbjct: 159 NAIANIYAENGYLKKGIDLFE--QILKQLEALHDNEEF-----DVKVRYNHAKALYLDSR 211
Query: 121 FDEAIHFYSVA 131
++E+++ + A
Sbjct: 212 YEESLYQVNKA 222
Score = 32.1 bits (72), Expect = 0.80
Identities = 13/104 (12%), Positives = 32/104 (30%), Gaps = 16/104 (15%)
Query: 602 LFKSNKALKIITKQIILILIIYRVLLKWWAQYIESTEDMDLAMKYYEEARDYLSMVRVLC 661
+ + K L I + +Y + A + + +E+ L
Sbjct: 135 ILELKKLLNQQLTGIDVYQNLY--IENAIANIYAENGYLKKGIDLFEQILKQL------- 185
Query: 662 FLQDFSRAAELANASGDTAAAYHLARQYENSGQFDEAIHFYSVA 705
+ E D Y+ A+ +++E+++ + A
Sbjct: 186 --EALHDNEEF-----DVKVRYNHAKALYLDSRYEESLYQVNKA 222
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C
biogenesis, O157:H7 EDL933, formate- nitrite reductase
complex, lyase; 2.05A {Escherichia coli}
Length = 177
Score = 31.8 bits (72), Expect = 0.67
Identities = 13/142 (9%), Positives = 40/142 (28%), Gaps = 25/142 (17%)
Query: 56 WAQYIESTEDMDLAMKYYEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAAYHLARQY 115
W + + + ++ + ++ L ++ ++ L Y
Sbjct: 3 WQAVRAEYQRQRDPLHQFASQQNPEAQLQAL--------QDKIRANPQNSEQWALLGEYY 54
Query: 116 ENSGQFDEAIHFYSVAGSCGNAVRLCKEQALDDQLWN-----LALSAGPSEQIEAATYLE 170
+ ++ Y A++L E + +L+ L A + ++
Sbjct: 55 LWQNDYSNSLLAYR------QALQLRGE---NAELYAALATVLYYQASQHMTAQTRAMID 105
Query: 171 ---TIEPDKAVLLYHKAGALHK 189
++ ++ L A
Sbjct: 106 KALALDSNEITALMLLASDAFM 127
Score = 29.8 bits (67), Expect = 2.7
Identities = 15/128 (11%), Positives = 30/128 (23%), Gaps = 44/128 (34%)
Query: 7 MKNGDIDRAIRMFEKAETHQQHVPRMLLENTDKLEKYIIQSKDPVLLKWWAQ---YIEST 63
+ D ++ + +A ++ ++ L A Y S
Sbjct: 55 LWQNDYSNSLLAYRQA--------------------LQLRGENAELYAALATVLYYQASQ 94
Query: 64 EDMDLAMKYYEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAAYHLARQYENSGQFDE 123
++A LA S + A LA + +
Sbjct: 95 HMTAQTRAMIDKA---------------------LALDSNEITALMLLASDAFMQANYAQ 133
Query: 124 AIHFYSVA 131
AI +
Sbjct: 134 AIELWQKV 141
Score = 29.1 bits (65), Expect = 5.4
Identities = 23/177 (12%), Positives = 59/177 (33%), Gaps = 33/177 (18%)
Query: 630 WAQYIESTEDMDLAMKYYEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAAYHLARQY 689
W + + + ++ + ++ L ++ ++ L Y
Sbjct: 3 WQAVRAEYQRQRDPLHQFASQQNPEAQLQAL--------QDKIRANPQNSEQWALLGEYY 54
Query: 690 ENSGQFDEAIHFYSVAGSCGNAVRLCGQ-LDAVESIASELNVQSDQDLILKCASYFAR-- 746
+ ++ Y A++L G+ + ++A+ L Q+ Q + + + +
Sbjct: 55 LWQNDYSNSLLAYR------QALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKAL 108
Query: 747 -REH-HDRAVQMYAIA----RRYDQALSLIQTKHVPLSEELADLLVPPESDDQRQVV 797
+ A+ + A Y QA+ L Q ++ DL ++ Q+V
Sbjct: 109 ALDSNEITALMLLASDAFMQANYAQAIELWQ--------KVMDLN--SPRINRTQLV 155
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide
repeat, type III secretion; HET: MLY; 1.95A {Yersinia
enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Length = 148
Score = 31.4 bits (71), Expect = 0.78
Identities = 13/84 (15%), Positives = 22/84 (26%), Gaps = 19/84 (22%)
Query: 104 DTAAAYHLARQYENSGQFDEAIHFYSVAGSCGNAVRLCKEQALDDQLWNLALSAGPSEQI 163
Y LA SG +++A + LC D + +
Sbjct: 20 TLEQLYSLAFNQYQSGXYEDAHXVFQ---------ALCVLDHYDSRFFLGL--------- 61
Query: 164 EAATYLETIEPDKAVLLYHKAGAL 187
A + D A+ Y +
Sbjct: 62 -GACRQAMGQYDLAIHSYSYGAVM 84
Score = 31.0 bits (70), Expect = 0.83
Identities = 15/62 (24%), Positives = 19/62 (30%), Gaps = 14/62 (22%)
Query: 70 MKYYEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAAYHLARQYENSGQFDEAIHFYS 129
YE+A F L D+ L + GQ+D AIH YS
Sbjct: 34 SGXYEDAHXV------------FQALCVLD--HYDSRFFLGLGACRQAMGQYDLAIHSYS 79
Query: 130 VA 131
Sbjct: 80 YG 81
Score = 31.0 bits (70), Expect = 0.83
Identities = 15/62 (24%), Positives = 19/62 (30%), Gaps = 14/62 (22%)
Query: 644 MKYYEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAAYHLARQYENSGQFDEAIHFYS 703
YE+A F L D+ L + GQ+D AIH YS
Sbjct: 34 SGXYEDAHXV------------FQALCVLD--HYDSRFFLGLGACRQAMGQYDLAIHSYS 79
Query: 704 VA 705
Sbjct: 80 YG 81
Score = 29.1 bits (65), Expect = 4.0
Identities = 13/87 (14%), Positives = 22/87 (25%), Gaps = 21/87 (24%)
Query: 678 DTAAAYHLARQYENSGQFDEAIHFYSVAGSCGNAVRLCGQLDAVESIASELNVQSDQDLI 737
Y LA SG +++A + L+ D
Sbjct: 20 TLEQLYSLAFNQYQSGXYEDAHXVFQA--------------------LCVLD-HYDSRFF 58
Query: 738 LKCASYFARREHHDRAVQMYAIARRYD 764
L + +D A+ Y+ D
Sbjct: 59 LGLGACRQAMGQYDLAIHSYSYGAVMD 85
>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride
transfer mechanism, GR2-family, flavoenzyme, FAD
containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB:
2jb1_A* 2jb2_A* 2jb3_A*
Length = 489
Score = 32.6 bits (74), Expect = 0.84
Identities = 17/109 (15%), Positives = 35/109 (32%), Gaps = 11/109 (10%)
Query: 901 PGIEVDEETIVSSTGALSLKKGSVWGRLGAEV---TAIEFMNAIGGMGIDGEVAKQFQRI 957
PG ++ T + + + + A+ +GGM + FQ
Sbjct: 192 PGAGLNFGTEKKPFAMQEVIRSGIGRNFSFDFGYDQAMMMFTPVGGMD---RIYYAFQDR 248
Query: 958 LGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCV 1006
+G G +VT + +TV K+ ++ D + +
Sbjct: 249 IGTD--NIVFGAEVTSMKNVSEGVTVE---YTAGGSKKSITADYAICTI 292
>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT
structure initiative, northeast structural genomics
consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}
Length = 369
Score = 32.1 bits (74), Expect = 0.85
Identities = 16/87 (18%), Positives = 26/87 (29%), Gaps = 11/87 (12%)
Query: 929 GAEVTAIE-FMNAIGGM-----GI-D-GEVAKQFQRILGKQGMQFKLGTKVTGASKSGDN 980
GA +E ++ + GI D + +Q G Q T + +
Sbjct: 123 GAAARRLEPALHCTAALVSPSTGIVDSHALMLAYQGDAESDGAQLVFHTPLIAGRVRPEG 182
Query: 981 ITVTIENVKDPTKKEELSCDALLVCVG 1007
+P LSC L+ G
Sbjct: 183 GFELDFGGAEPM---TLSCRVLINAAG 206
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing
protein, structur genomics, joint center for structural
genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Length = 208
Score = 31.6 bits (72), Expect = 0.88
Identities = 20/128 (15%), Positives = 34/128 (26%), Gaps = 37/128 (28%)
Query: 7 MKNGDIDRAIRMFEKAETHQQHVPRMLLENTDKLEKYIIQSKDPVLLKWWAQYIE----- 61
++ G +A+ F + + N D+ E Y + D E
Sbjct: 15 IEAGQNGQAVSYFRQT----------IALNIDRTEMYYWTNVDKNSEISSKLATELALAY 64
Query: 62 -STEDMDLAMKYYEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAAYHLARQYENSGQ 120
+ D A +Y+E L A + A GQ
Sbjct: 65 KKNRNYDKAYLFYKEL---------------------LQKAPNNVDCLEACAEMQVCRGQ 103
Query: 121 FDEAIHFY 128
+A+ Y
Sbjct: 104 EKDALRMY 111
Score = 31.6 bits (72), Expect = 1.0
Identities = 21/147 (14%), Positives = 39/147 (26%), Gaps = 27/147 (18%)
Query: 636 STEDMDLAMKYYEEA----RDYLSMVRVLCFLQDFSRAAELANASGDTAAAYHLARQYEN 691
A+ Y+ + D M + N+ + A LA Y+
Sbjct: 16 EAGQNGQAVSYFRQTIALNIDRTEM---------YYWTNVDKNSEISSKLATELALAYKK 66
Query: 692 SGQFDEAIHFYSVA-----------GSCGNAVRLCGQLD-AVESI--ASELNVQSDQDLI 737
+ +D+A FY +C GQ A+ +L + I
Sbjct: 67 NRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANI 126
Query: 738 LKCASYFARREHHDRAVQMYAIARRYD 764
Y+ E + ++
Sbjct: 127 FLGNYYYLTAEQEKKKLETDYKKLSSP 153
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics,
structural genomics conso SGC, microtubule, motor
protein, phosphoprotein; 2.70A {Homo sapiens} PDB:
3ceq_A
Length = 283
Score = 32.1 bits (74), Expect = 0.93
Identities = 15/120 (12%), Positives = 32/120 (26%), Gaps = 34/120 (28%)
Query: 73 YEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAAYH-LARQYENSGQFDEAIHFYSVA 131
Y++A +L + E + +GD + + E+ + ++ +
Sbjct: 185 YQDAETLY--KEIL----TRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYG 238
Query: 132 GSCGNAVRLCKEQALDDQ-------LWNLALSAGPSEQIEAATYLETIEPDKAVLLYHKA 184
+A L +L A Y + + A L A
Sbjct: 239 S---------WYKACKVDSPTVNTTLRSL-----------GALYRRQGKLEAAHTLEDCA 278
Score = 32.1 bits (74), Expect = 0.96
Identities = 7/57 (12%), Positives = 20/57 (35%), Gaps = 7/57 (12%)
Query: 647 YEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAAYH-LARQYENSGQFDEAIHFY 702
Y++A +L + E + +GD + + E+ + ++ +
Sbjct: 185 YQDAETLY--KEIL----TRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYG 235
Score = 31.7 bits (73), Expect = 1.3
Identities = 11/117 (9%), Positives = 28/117 (23%), Gaps = 34/117 (29%)
Query: 678 DTAAAYH-LARQYENSGQFDEAIHFY-----------------SVAGSCGN-AVRLCGQL 718
+ A + LA Y G++ +A Y + R +
Sbjct: 167 NVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKD 226
Query: 719 DAVESIASELNVQSDQDLILKCASYFARREHHDRAVQMYAIAR------RYDQALSL 769
+ ++ K + + ++ + + A +L
Sbjct: 227 KRRD--SAPYGEYGSWYKACK-------VDSPTVNTTLRSLGALYRRQGKLEAAHTL 274
Score = 29.8 bits (68), Expect = 4.2
Identities = 23/125 (18%), Positives = 37/125 (29%), Gaps = 56/125 (44%)
Query: 104 DTAAAYH-LARQYENSGQFDEAIHFY----------------SVAGSCGN---------- 136
D A + LA Y + ++ EA H +VA + N
Sbjct: 41 DVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGK 100
Query: 137 ---AVRLCKEQALDDQ--------------LWNLALSAGPSEQIEAATYLETIEPDKAVL 179
A LC ++AL+ + L NLAL + ++
Sbjct: 101 YKEAEPLC-KRALEIREKVLGKFHPDVAKQLNNLAL-----------LCQNQGKAEEVEY 148
Query: 180 LYHKA 184
Y +A
Sbjct: 149 YYRRA 153
Score = 29.4 bits (67), Expect = 5.7
Identities = 19/161 (11%), Positives = 35/161 (21%), Gaps = 64/161 (39%)
Query: 678 DTAAAYH-LARQYENSGQFDEAIHFY----------------SVAGSCGNAVRLCGQLDA 720
D A + LA +N G+ +E ++Y +VA + N
Sbjct: 125 DVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNN---------- 174
Query: 721 VESIASELNVQSDQDLILKCASYFARREHHDRAVQMYAIARRYDQALSLIQTKHVPLSEE 780
+AS Q + A + Y + L+ K
Sbjct: 175 ---LASCYLKQGK----------------YQDAETL------YKEILTRAHEKE--FGSV 207
Query: 781 LADLLVPPESDDQRQVVLNTLGNCAAVQANYHLATKLFTQA 821
D + + +
Sbjct: 208 NGDNK----------PIWMHAEEREESKDKRRDSAPYGEYG 238
Score = 29.0 bits (66), Expect = 8.6
Identities = 8/26 (30%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Query: 678 DTAAAYH-LARQYENSGQFDEAIHFY 702
D A + LA Y + ++ EA H
Sbjct: 41 DVATMLNILALVYRDQNKYKEAAHLL 66
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A
{Saccharomyces cerevisiae}
Length = 258
Score = 31.8 bits (73), Expect = 1.0
Identities = 18/130 (13%), Positives = 41/130 (31%), Gaps = 18/130 (13%)
Query: 7 MKNGDIDRAIRMFEKAETHQQHVPRMLLENTDKLEKYIIQSKDPVLLKWWAQYIESTEDM 66
+ G+ + AI A + + + Y + SK D+
Sbjct: 49 YEKGEYETAISTLNDA----------VEQGREMRADYKVISK---SFARIGNAYHKLGDL 95
Query: 67 DLAMKYYEEARDYLSMVRVLCFLQDFSRAAELANAS-----GDTAAAYHLARQYENSGQF 121
++YY+++ +L L++ + + A A A ++Y +
Sbjct: 96 KKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDW 155
Query: 122 DEAIHFYSVA 131
A+ Y+
Sbjct: 156 PNAVKAYTEM 165
Score = 31.0 bits (71), Expect = 1.9
Identities = 11/79 (13%), Positives = 27/79 (34%), Gaps = 5/79 (6%)
Query: 632 QYIESTEDMDLAMKYYEEARDYLSMVRVLCFLQDFSRAAELANAS-----GDTAAAYHLA 686
D+ ++YY+++ +L L++ + + A A A
Sbjct: 87 NAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEG 146
Query: 687 RQYENSGQFDEAIHFYSVA 705
++Y + A+ Y+
Sbjct: 147 KEYFTKSDWPNAVKAYTEM 165
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural
genomics, joint center FO structural genomics, JCSG;
HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Length = 212
Score = 31.4 bits (72), Expect = 1.2
Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
Query: 92 FSRAAELANASGDTAAAYHLARQYENSGQFDEAIHFYSVAGSCGNA 137
+ + AE GD A Y+LA + +SG + +A ++ A + G+
Sbjct: 9 YQQQAEA----GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDG 50
Score = 31.4 bits (72), Expect = 1.2
Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
Query: 666 FSRAAELANASGDTAAAYHLARQYENSGQFDEAIHFYSVAGSCGNA 711
+ + AE GD A Y+LA + +SG + +A ++ A + G+
Sbjct: 9 YQQQAEA----GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDG 50
Score = 29.1 bits (66), Expect = 5.6
Identities = 18/101 (17%), Positives = 28/101 (27%), Gaps = 37/101 (36%)
Query: 53 LKWW----------AQYIESTEDMDLAMKYYEEARDYLSMVRVLCFLQDFSRAA---ELA 99
+ AQY LA + D+ +A + A
Sbjct: 6 GSQYQQQAEAGDRRAQY-------YLADTWVSS--------------GDYQKAEYWAQKA 44
Query: 100 NASGDTAAAYHLARQYENSGQ---FDEAIHFYSVAGSCGNA 137
A GD A LA+ + Q + +A A G+
Sbjct: 45 AAQGDGDALALLAQLKIRNPQQADYPQARQLAEKAVEAGSK 85
Score = 29.1 bits (66), Expect = 5.6
Identities = 18/101 (17%), Positives = 28/101 (27%), Gaps = 37/101 (36%)
Query: 627 LKWW----------AQYIESTEDMDLAMKYYEEARDYLSMVRVLCFLQDFSRAA---ELA 673
+ AQY LA + D+ +A + A
Sbjct: 6 GSQYQQQAEAGDRRAQY-------YLADTWVSS--------------GDYQKAEYWAQKA 44
Query: 674 NASGDTAAAYHLARQYENSGQ---FDEAIHFYSVAGSCGNA 711
A GD A LA+ + Q + +A A G+
Sbjct: 45 AAQGDGDALALLAQLKIRNPQQADYPQARQLAEKAVEAGSK 85
Score = 29.1 bits (66), Expect = 6.4
Identities = 8/50 (16%), Positives = 15/50 (30%), Gaps = 6/50 (12%)
Query: 92 FSRAAELANASGDTAAAYHLARQYENSGQ-----FDEAIHFYSVAGSCGN 136
AA + + A L Y + G +A ++ + S
Sbjct: 112 LQDAARDSESDAAVDAQMLLGLIYAS-GVHGPEDDVKASEYFKGSSSLSR 160
Score = 29.1 bits (66), Expect = 6.4
Identities = 8/50 (16%), Positives = 15/50 (30%), Gaps = 6/50 (12%)
Query: 666 FSRAAELANASGDTAAAYHLARQYENSGQ-----FDEAIHFYSVAGSCGN 710
AA + + A L Y + G +A ++ + S
Sbjct: 112 LQDAARDSESDAAVDAQMLLGLIYAS-GVHGPEDDVKASEYFKGSSSLSR 160
Score = 29.1 bits (66), Expect = 7.0
Identities = 14/63 (22%), Positives = 20/63 (31%), Gaps = 9/63 (14%)
Query: 90 QDFSRAAEL---ANASGDTAAAYHLARQYENSGQ-----FDEAIHFYSVAGSCGNAVRLC 141
D+ +A +L A +G + LAR N Q AI A +
Sbjct: 67 ADYPQARQLAEKAVEAGSKSGEIVLARVLVN-RQAGATDVAHAITLLQDAARDSESDAAV 125
Query: 142 KEQ 144
Q
Sbjct: 126 DAQ 128
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP:
k.38.1.1
Length = 243
Score = 31.3 bits (72), Expect = 1.2
Identities = 7/66 (10%), Positives = 21/66 (31%), Gaps = 17/66 (25%)
Query: 66 MDLAMKYYEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAAYHLARQYENSGQFDEAI 125
M + ++ + R + +A+ +G + G +++A
Sbjct: 1 MGSSHHHHHHS------------SGLVPRGSHMASMTGGQ-----QMGRGSEFGDYEKAA 43
Query: 126 HFYSVA 131
++ A
Sbjct: 44 EAFTKA 49
Score = 31.3 bits (72), Expect = 1.2
Identities = 7/66 (10%), Positives = 21/66 (31%), Gaps = 17/66 (25%)
Query: 640 MDLAMKYYEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAAYHLARQYENSGQFDEAI 699
M + ++ + R + +A+ +G + G +++A
Sbjct: 1 MGSSHHHHHHS------------SGLVPRGSHMASMTGGQ-----QMGRGSEFGDYEKAA 43
Query: 700 HFYSVA 705
++ A
Sbjct: 44 EAFTKA 49
>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A
{Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A*
1f6m_A* 1tdf_A* 1tde_A*
Length = 320
Score = 31.7 bits (73), Expect = 1.3
Identities = 24/81 (29%), Positives = 33/81 (40%), Gaps = 14/81 (17%)
Query: 978 GDNITVT---IENVKDPTKKEELSCDALLVCVGRRPYTH----NLGLEE--IGIEKDEKG 1028
GD + VT + + ++ E L L V +G P T L LE I ++ G
Sbjct: 212 GDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFEGQLELENGYIKVQSGIHG 271
Query: 1029 RVPVNSRFQTVIPNIFAIGDC 1049
QT IP +FA GD
Sbjct: 272 NAT-----QTSIPGVFAAGDV 287
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt
pseudomonas, protein binding; 2.50A {Pseudomonas
fluorescens}
Length = 452
Score = 31.6 bits (72), Expect = 1.4
Identities = 19/101 (18%), Positives = 38/101 (37%), Gaps = 20/101 (19%)
Query: 639 DMDLAMKYYEEA--RDYLSMVRV-LCFL------QDFSRAAEL---ANASGDTAAAYHLA 686
D A ++E+A R+ + + + +A + A +G +A + +A
Sbjct: 302 DAKAAEAHFEKAVGREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIA 361
Query: 687 RQYENSGQ-----FDEAIHFYSVAGSCGN--AVRLCGQLDA 720
+ + G+ A F +A + A L QL+A
Sbjct: 362 QLFSQ-GKGTKPDPLNAYVFSQLAKAQDTPEANDLATQLEA 401
Score = 31.2 bits (71), Expect = 1.9
Identities = 14/90 (15%), Positives = 32/90 (35%), Gaps = 18/90 (20%)
Query: 65 DMDLAMKYYEEA--RDYLSMVRV-LCFL------QDFSRAAEL---ANASGDTAAAYHLA 112
D A ++E+A R+ + + + +A + A +G +A + +A
Sbjct: 302 DAKAAEAHFEKAVGREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIA 361
Query: 113 RQYENSGQ-----FDEAIHFYSVAGSCGNA 137
+ + G+ A F +A +
Sbjct: 362 QLFSQ-GKGTKPDPLNAYVFSQLAKAQDTP 390
Score = 30.9 bits (70), Expect = 2.2
Identities = 15/96 (15%), Positives = 25/96 (26%), Gaps = 17/96 (17%)
Query: 52 LLKWWAQYIESTEDMDLAMKYYEEAR--DYLSMVRVLCFL------QDFSRAAEL---AN 100
+ + T D A E+ S V + L D + +
Sbjct: 219 VARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGR 278
Query: 101 ASGDTAAAYHLARQYENSGQ-----FDEAIHFYSVA 131
A+ A L + Y G+ A + A
Sbjct: 279 AADQPRAELLLGKLYYE-GKWVPADAKAAEAHFEKA 313
Score = 30.9 bits (70), Expect = 2.2
Identities = 15/96 (15%), Positives = 25/96 (26%), Gaps = 17/96 (17%)
Query: 626 LLKWWAQYIESTEDMDLAMKYYEEAR--DYLSMVRVLCFL------QDFSRAAEL---AN 674
+ + T D A E+ S V + L D + +
Sbjct: 219 VARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGR 278
Query: 675 ASGDTAAAYHLARQYENSGQ-----FDEAIHFYSVA 705
A+ A L + Y G+ A + A
Sbjct: 279 AADQPRAELLLGKLYYE-GKWVPADAKAAEAHFEKA 313
Score = 30.9 bits (70), Expect = 2.9
Identities = 16/92 (17%), Positives = 28/92 (30%), Gaps = 17/92 (18%)
Query: 63 TEDMDLAMKYYE--------EARDYLSMVRVL----CFLQDFSRAAELAN--ASGDTAAA 108
E +K E A+ S+ RVL D A L A G A+
Sbjct: 192 PEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIAPGYPASW 251
Query: 109 YHLARQYENSGQ---FDEAIHFYSVAGSCGNA 137
LA+ + + ++ + + +
Sbjct: 252 VSLAQLLYDFPELGDVEQMMKYLDNGRAADQP 283
Score = 30.9 bits (70), Expect = 2.9
Identities = 16/92 (17%), Positives = 28/92 (30%), Gaps = 17/92 (18%)
Query: 637 TEDMDLAMKYYE--------EARDYLSMVRVL----CFLQDFSRAAELAN--ASGDTAAA 682
E +K E A+ S+ RVL D A L A G A+
Sbjct: 192 PEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIAPGYPASW 251
Query: 683 YHLARQYENSGQ---FDEAIHFYSVAGSCGNA 711
LA+ + + ++ + + +
Sbjct: 252 VSLAQLLYDFPELGDVEQMMKYLDNGRAADQP 283
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium
(SGC), motor PR transport protein; 2.80A {Homo sapiens}
Length = 311
Score = 31.4 bits (72), Expect = 1.6
Identities = 17/89 (19%), Positives = 27/89 (30%), Gaps = 26/89 (29%)
Query: 104 DTAAAYH-LARQYENSGQFDEAIHFYSVAGSCGNAVRLCKEQALDDQLWNLALSAGP--- 159
H L QY + G+++ A+ +QAL+D G
Sbjct: 25 ARLRTLHNLVIQYASQGRYEVAVPLC--------------KQALEDLEKTS----GHDHP 66
Query: 160 ----SEQIEAATYLETIEPDKAVLLYHKA 184
I A Y + + A L + A
Sbjct: 67 DVATMLNILALVYRDQNKYKDAANLLNDA 95
Score = 31.4 bits (72), Expect = 1.7
Identities = 16/120 (13%), Positives = 30/120 (25%), Gaps = 34/120 (28%)
Query: 73 YEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAAYH-LARQYENSGQFDEAIHFYSVA 131
+++A +L + E + + + + E G+ + F
Sbjct: 211 FKQAETLY--KEIL----TRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYG 264
Query: 132 GSCGNAVRLCKEQALDDQ-------LWNLALSAGPSEQIEAATYLETIEPDKAVLLYHKA 184
G +A L NL A Y + + A L A
Sbjct: 265 G---------WYKACKVDSPTVTTTLKNL-----------GALYRRQGKFEAAETLEEAA 304
Score = 31.0 bits (71), Expect = 1.9
Identities = 7/61 (11%), Positives = 18/61 (29%), Gaps = 7/61 (11%)
Query: 647 YEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAAYH-LARQYENSGQFDEAIHFYSVA 705
+++A +L + E + + + + E G+ + F
Sbjct: 211 FKQAETLY--KEIL----TRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYG 264
Query: 706 G 706
G
Sbjct: 265 G 265
Score = 30.6 bits (70), Expect = 2.7
Identities = 12/119 (10%), Positives = 28/119 (23%), Gaps = 34/119 (28%)
Query: 678 DTAAAYH-LARQYENSGQFDEAIHFY-----------------SVAGSCGN-AVRLCGQL 718
+ A + LA Y G+F +A Y + R +
Sbjct: 193 NVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKG 252
Query: 719 DAVESIASELNVQSDQDLILKCASYFARREHHDRAVQMYAIAR------RYDQALSLIQ 771
+ + K + + + +++ A +L +
Sbjct: 253 KQKD--GTSFGEYGGWYKACK-------VDSPTVTTTLKNLGALYRRQGKFEAAETLEE 302
Score = 30.2 bits (69), Expect = 3.2
Identities = 6/26 (23%), Positives = 11/26 (42%), Gaps = 1/26 (3%)
Query: 678 DTAAAYH-LARQYENSGQFDEAIHFY 702
H L QY + G+++ A+
Sbjct: 25 ARLRTLHNLVIQYASQGRYEVAVPLC 50
Score = 29.4 bits (67), Expect = 5.5
Identities = 18/96 (18%), Positives = 28/96 (29%), Gaps = 40/96 (41%)
Query: 104 DTAAAYH-LARQYENSGQFDEAIHFYSVAGSCGNAVRLCKEQALD--------------D 148
AA + LA Y G++ EA ++AL+
Sbjct: 109 AVAATLNNLAVLYGKRGKYKEAEPLC--------------KRALEIREKVLGKDHPDVAK 154
Query: 149 QLWNLALSAGPSEQIEAATYLETIEPDKAVLLYHKA 184
QL NLAL + ++ Y +A
Sbjct: 155 QLNNLAL-----------LCQNQGKYEEVEYYYQRA 179
Score = 29.4 bits (67), Expect = 5.8
Identities = 18/96 (18%), Positives = 33/96 (34%), Gaps = 40/96 (41%)
Query: 104 DTAAAYH-LARQYENSGQFDEAIHFYSVAGSCGNAVRLCKEQALDDQ------------- 149
D A + LA +N G+++E ++Y ++AL+
Sbjct: 151 DVAKQLNNLALLCQNQGKYEEVEYYY--------------QRALEIYQTKLGPDDPNVAK 196
Query: 150 -LWNLALSAGPSEQIEAATYLETIEPDKAVLLYHKA 184
NL A+ YL+ + +A LY +
Sbjct: 197 TKNNL-----------ASCYLKQGKFKQAETLYKEI 221
Score = 29.0 bits (66), Expect = 9.0
Identities = 8/26 (30%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 678 DTAAAYH-LARQYENSGQFDEAIHFY 702
D A + LA +N G+++E ++Y
Sbjct: 151 DVAKQLNNLALLCQNQGKYEEVEYYY 176
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex,
tetratricopeptide repeat, TPR, helical repeat, signaling
protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB:
2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Length = 368
Score = 31.5 bits (72), Expect = 1.6
Identities = 24/160 (15%), Positives = 45/160 (28%), Gaps = 26/160 (16%)
Query: 39 KLEKYI--IQSKDPVLLKWWAQYIESTEDMDLAMKYYEEARDYLSMVRVLCFLQDFSRAA 96
+ E+ I+S K A+ E + A + + D S + +
Sbjct: 2 EFERAKSAIESDVDFWDKLQAELEEMAKRDAEAHPWLSDYDDLTSA--------TYDKGY 53
Query: 97 ELA--NASGDTAAAYHLARQYENSGQFDEAIHFYSVAGSCGNAVRLCKEQALDDQLW-NL 153
+ N D + + G A+ + A ++ + W L
Sbjct: 54 QFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAA---------VQQDPKHMEAWQYL 104
Query: 154 ALSAGPSEQIEAA--TYLETIE--PDKAVLLYHKAGALHK 189
+ +EQ A +E PD L A +
Sbjct: 105 GTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTN 144
Score = 29.6 bits (67), Expect = 6.1
Identities = 14/122 (11%), Positives = 29/122 (23%), Gaps = 24/122 (19%)
Query: 10 GDIDRAIRMFEKAETHQQHVPRMLLENTDKLEKYIIQSKDPVLLKWWAQYIESTEDMDLA 69
+A + L + + +
Sbjct: 146 SLQRQACEILRDW----------LRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDS 195
Query: 70 MKYYEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAAYHLARQYENSGQFDEAIHFYS 129
+ + E + F A L S D L + SG++D+A+ ++
Sbjct: 196 L--FLEV------------KELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFT 241
Query: 130 VA 131
A
Sbjct: 242 AA 243
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat,
cysteine rich protein, loop-helix-TU repeat protein,
hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Length = 273
Score = 31.0 bits (71), Expect = 1.8
Identities = 16/89 (17%), Positives = 28/89 (31%), Gaps = 30/89 (33%)
Query: 57 AQYIESTEDMDLAMKYYEEARDYLSMVRVLCFLQDFSRAAEL---ANASGDTAAAYHLAR 113
L K Y+E +DF++A + A + + ++L
Sbjct: 8 ELV-------GLGAKSYKE--------------KDFTQAKKYFEKACDLKENSGCFNLGV 46
Query: 114 QYENSGQ-----FDEAIHFYSVAGSCGNA 137
Y GQ +A FY+ A +
Sbjct: 47 LYYQ-GQGVEKNLKKAASFYAKACDLNYS 74
Score = 31.0 bits (71), Expect = 1.8
Identities = 16/89 (17%), Positives = 28/89 (31%), Gaps = 30/89 (33%)
Query: 631 AQYIESTEDMDLAMKYYEEARDYLSMVRVLCFLQDFSRAAEL---ANASGDTAAAYHLAR 687
L K Y+E +DF++A + A + + ++L
Sbjct: 8 ELV-------GLGAKSYKE--------------KDFTQAKKYFEKACDLKENSGCFNLGV 46
Query: 688 QYENSGQ-----FDEAIHFYSVAGSCGNA 711
Y GQ +A FY+ A +
Sbjct: 47 LYYQ-GQGVEKNLKKAASFYAKACDLNYS 74
Score = 31.0 bits (71), Expect = 2.0
Identities = 6/37 (16%), Positives = 10/37 (27%)
Query: 101 ASGDTAAAYHLARQYENSGQFDEAIHFYSVAGSCGNA 137
A D L + F +A ++ A
Sbjct: 2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACDLKEN 38
Score = 31.0 bits (71), Expect = 2.0
Identities = 6/37 (16%), Positives = 10/37 (27%)
Query: 675 ASGDTAAAYHLARQYENSGQFDEAIHFYSVAGSCGNA 711
A D L + F +A ++ A
Sbjct: 2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACDLKEN 38
Score = 30.6 bits (70), Expect = 2.3
Identities = 9/56 (16%), Positives = 17/56 (30%), Gaps = 9/56 (16%)
Query: 90 QDFSRAAEL---ANASGDTAAAYHLARQYENSGQ-----FDEAIHFYSVAGSCGNA 137
++F A A + ++L N G+ +AI + G
Sbjct: 200 KNFKEALARYSKACELENGGGCFNLGAMQYN-GEGVTRNEKQAIENFKKGCKLGAK 254
Score = 30.6 bits (70), Expect = 2.3
Identities = 9/56 (16%), Positives = 17/56 (30%), Gaps = 9/56 (16%)
Query: 664 QDFSRAAEL---ANASGDTAAAYHLARQYENSGQ-----FDEAIHFYSVAGSCGNA 711
++F A A + ++L N G+ +AI + G
Sbjct: 200 KNFKEALARYSKACELENGGGCFNLGAMQYN-GEGVTRNEKQAIENFKKGCKLGAK 254
Score = 29.5 bits (67), Expect = 5.5
Identities = 19/94 (20%), Positives = 32/94 (34%), Gaps = 25/94 (26%)
Query: 65 DMDLAMKYYEEARD-------------YLSMVRVLCFLQDFSRAAEL---ANASGDTAAA 108
D A++Y+ +A D Y + +D +A A D+
Sbjct: 129 DFKKAVEYFTKACDLNDGDGCTILGSLYDAGRGTP---KDLKKALASYDKACDLKDSPGC 185
Query: 109 YHLARQYENSGQ-----FDEAIHFYSVAGSCGNA 137
++ Y + G+ F EA+ YS A N
Sbjct: 186 FNAGNMYHH-GEGATKNFKEALARYSKACELENG 218
Score = 29.5 bits (67), Expect = 5.5
Identities = 19/94 (20%), Positives = 32/94 (34%), Gaps = 25/94 (26%)
Query: 639 DMDLAMKYYEEARD-------------YLSMVRVLCFLQDFSRAAEL---ANASGDTAAA 682
D A++Y+ +A D Y + +D +A A D+
Sbjct: 129 DFKKAVEYFTKACDLNDGDGCTILGSLYDAGRGTP---KDLKKALASYDKACDLKDSPGC 185
Query: 683 YHLARQYENSGQ-----FDEAIHFYSVAGSCGNA 711
++ Y + G+ F EA+ YS A N
Sbjct: 186 FNAGNMYHH-GEGATKNFKEALARYSKACELENG 218
>1mtz_A Proline iminopeptidase; alpha-beta hydrolase, CAP domain, caged
active site, prolyl peptidase; 1.80A {Thermoplasma
acidophilum} SCOP: c.69.1.7 PDB: 1mt3_A 1mu0_A* 1xrr_A
1xrq_A 1xro_A 1xrn_A 1xrm_A 1xrp_A 1xrl_A* 1xqw_A*
1xqx_A* 1xqy_A 1xqv_A
Length = 293
Score = 31.0 bits (71), Expect = 1.9
Identities = 16/116 (13%), Positives = 36/116 (31%), Gaps = 22/116 (18%)
Query: 22 AETHQQHVPRMLLENTDKLEKYIIQSKDPVLLKWWAQYI-ESTEDMDLAMKYYEEARDY- 79
A +Q H+ +++ S P+ +K + I E A+K Y + Y
Sbjct: 115 AVKYQDHLKGLIVSG--------GLSSVPLTVKEMNRLIDELPAKYRDAIKKYGSSGSYE 166
Query: 80 ---------LSMVRVLCFLQDFSRAAELANASGDTAAAYHLAR---QYENSGQFDE 123
+ L +D+ + + Y + ++ +G +
Sbjct: 167 NPEYQEAVNYFYHQHLLRSEDWPPEVLKSLEYAERRNVYRIMNGPNEFTITGTIKD 222
>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct
structural genomics, PSI, protein structure initiative;
HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}
Length = 335
Score = 31.0 bits (71), Expect = 1.9
Identities = 21/81 (25%), Positives = 30/81 (37%), Gaps = 14/81 (17%)
Query: 970 KVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGR 1029
VTG + + + + L + V +G P GL I+ D G
Sbjct: 222 TVTG---------LRVRDTNT-GAETTLPVTGVFVAIGHEP---RSGLVREAIDVDPDGY 268
Query: 1030 VPVNSRF-QTVIPNIFAIGDC 1049
V V R T +P +FA GD
Sbjct: 269 VLVQGRTTSTSLPGVFAAGDL 289
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle,
KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Length = 223
Score = 30.8 bits (69), Expect = 2.1
Identities = 21/119 (17%), Positives = 41/119 (34%), Gaps = 26/119 (21%)
Query: 12 IDRAIRMFEKAETHQQHVPRMLLENTDKLEKYIIQSKDPVLLKWWAQYIESTEDMDLAMK 71
I + F + ET + +L T + + + D L+ W QY+
Sbjct: 79 IKWTLDNFPQGETKTSGLVTLLERCTREFVRNPLYKDDVRYLRIWMQYVN---------- 128
Query: 72 YYEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAAYHL--ARQYENSGQFDEAIHFY 128
Y +E + S + + G ++ ++ A +E+ G F +A Y
Sbjct: 129 YIDEPVELFSFLA--------------HHHIGQESSIFYEEYANYFESRGLFQKADEVY 173
>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP,
oxidoreductase, phosphoprotein, redox-A center; HET: FAD
CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*
Length = 338
Score = 31.0 bits (71), Expect = 2.1
Identities = 18/75 (24%), Positives = 29/75 (38%), Gaps = 8/75 (10%)
Query: 978 GDNITVT---IENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKGRVPVNS 1034
GD + I+N K ++ +L L +G P + ++ DE G +
Sbjct: 237 GDGKLLNALRIKNTKK-NEETDLPVSGLFYAIGHTP---ATKIVAGQVDTDEAGYIKTVP 292
Query: 1035 RF-QTVIPNIFAIGD 1048
T +P FA GD
Sbjct: 293 GSSLTSVPGFFAAGD 307
>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S,
4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD
HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1
c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*
Length = 660
Score = 31.1 bits (71), Expect = 2.4
Identities = 6/29 (20%), Positives = 14/29 (48%), Gaps = 4/29 (13%)
Query: 1028 GRVPVNSRFQTVIPNIFAIGDC----IHG 1052
G + + R + + +F+ G+ +HG
Sbjct: 373 GGIRTDYRGEAKLKGLFSAGEAACWDMHG 401
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural
protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Length = 308
Score = 30.8 bits (69), Expect = 2.4
Identities = 15/109 (13%), Positives = 34/109 (31%), Gaps = 23/109 (21%)
Query: 9 NGDIDRAIRMFEKAETHQQHVPRMLLENTDKLEKYIIQSKDPVLLKWWAQYIESTEDMDL 68
+ D A ++FE L+KY P + + Y+ + +
Sbjct: 182 SKDKSVAFKIFELG-----------------LKKY---GDIPEYVLAYIDYLSHLNEDNN 221
Query: 69 AMKYYEEARDYLSM-VRVLCFLQDFSRAAELANASGDTAAAYHLARQYE 116
+E S+ + ++R + GD A+ + ++
Sbjct: 222 TRVLFERVLTSGSLPPEKSGEI--WARFLAFESNIGDLASILKVEKRRF 268
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics,
PSI-2, protein structure initiative; 2.80A {Salinibacter
ruber} PDB: 2kcl_A 2kcv_A
Length = 100
Score = 28.8 bits (65), Expect = 2.5
Identities = 5/25 (20%), Positives = 10/25 (40%)
Query: 104 DTAAAYHLARQYENSGQFDEAIHFY 128
D Y LA+++ A+ +
Sbjct: 6 DPFTRYALAQEHLKHDNASRALALF 30
Score = 28.8 bits (65), Expect = 2.5
Identities = 5/25 (20%), Positives = 10/25 (40%)
Query: 678 DTAAAYHLARQYENSGQFDEAIHFY 702
D Y LA+++ A+ +
Sbjct: 6 DPFTRYALAQEHLKHDNASRALALF 30
Score = 28.0 bits (63), Expect = 5.3
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 106 AAAYHLARQYENSGQFDEAIHFY 128
YHL + YE + D+AI Y
Sbjct: 42 GTYYHLGKLYERLDRTDDAIDTY 64
Score = 28.0 bits (63), Expect = 5.3
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 680 AAAYHLARQYENSGQFDEAIHFY 702
YHL + YE + D+AI Y
Sbjct: 42 GTYYHLGKLYERLDRTDDAIDTY 64
>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace,
succinate dehydrogenase, CO quinol, quinone,
oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia
coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A*
1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*
Length = 602
Score = 30.4 bits (69), Expect = 3.5
Identities = 9/29 (31%), Positives = 16/29 (55%), Gaps = 4/29 (13%)
Query: 1028 GRVPVNSRFQTVIPNIFAIGDC----IHG 1052
G + + +T I +FA+G+C +HG
Sbjct: 360 GGIETDQNCETRIKGLFAVGECSSVGLHG 388
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition,
kinase-INH complex, rubredoxin fold, TPR domain,
transferase; HET: AXX; 2.40A {Mycobacterium
tuberculosis}
Length = 681
Score = 30.6 bits (69), Expect = 3.7
Identities = 20/107 (18%), Positives = 34/107 (31%), Gaps = 6/107 (5%)
Query: 94 RAAELANA-----SGDTAAAYHLARQYENSGQFDEAIHFYSVAGSCGNAVRLCKEQALDD 148
+ G +AA+ LAR G A+ + +
Sbjct: 518 DEHKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVT 577
Query: 149 QLWNLALSA-GPSEQIEAATYLETIEPDKAVLLYHKAGALHKALDLA 194
L + S + +AA +E + P + +L +A L ALD
Sbjct: 578 LLSGRSTSEVTEEQIRDAARRVEALPPTEPRVLQIRALVLGGALDWL 624
>3bzw_A Putative lipase; protein structure initiative II, (PSI-II), NYSGXRC,
structural genomics; 1.87A {Bacteroides thetaiotaomicron
vpi-5482} SCOP: c.23.10.9
Length = 274
Score = 29.8 bits (66), Expect = 4.8
Identities = 17/81 (20%), Positives = 31/81 (38%), Gaps = 5/81 (6%)
Query: 947 DGEVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCV 1006
G+ K++ L + LG SG + K+ DA+LV +
Sbjct: 42 YGDNIKKYWDFLKE-----WLGITPFVYGISGRQWDDVPRQAEKLKKEHGGEVDAILVFM 96
Query: 1007 GRRPYTHNLGLEEIGIEKDEK 1027
G Y ++ + E E++E+
Sbjct: 97 GTNDYNSSVPIGEWFTEQEEQ 117
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein;
secretin, TPR repeat, type IV pilus, bacterail
virulence; 1.54A {Neisseria meningitidis}
Length = 225
Score = 29.5 bits (67), Expect = 4.8
Identities = 30/200 (15%), Positives = 50/200 (25%), Gaps = 38/200 (19%)
Query: 7 MKNGDIDRAIRMFEKAETHQQHVPR------MLLENTDKLEKYI--------IQSKDP-- 50
M+ D +A E A + + +K I+
Sbjct: 19 MRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEI 78
Query: 51 ------VLLKWWAQYIESTEDMDLAMK---YYEEARDYLSMVRVLCFLQDFSRAAE---- 97
L + ES D A+ Y L+ F A
Sbjct: 79 NNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKR 138
Query: 98 -LANASGDTAAAYHLARQYENSGQFDEAIHFYSVAGSCGNAVRLCKEQALDDQLWN-LAL 155
LA A LAR +GQ +A +++ + E D L +
Sbjct: 139 SLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKY-------QSRVEVLQADDLLLGWKI 191
Query: 156 SAGPSEQIEAATYLETIEPD 175
+ A Y ++ +
Sbjct: 192 AKALGNAQAAYEYEAQLQAN 211
>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex,
oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP:
c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*
Length = 382
Score = 29.9 bits (68), Expect = 5.0
Identities = 7/46 (15%), Positives = 17/46 (36%), Gaps = 7/46 (15%)
Query: 962 GMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVG 1007
G + T V + G+ + + T ++ + ++V G
Sbjct: 178 GAEIFEHTPVLHVERDGEALFIK-------TPSGDVWANHVVVASG 216
>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein,
redox-active center, oxidoreductase, D oxidoreductase;
HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5
c.3.1.5 PDB: 2whd_A*
Length = 333
Score = 29.8 bits (68), Expect = 5.2
Identities = 19/81 (23%), Positives = 30/81 (37%), Gaps = 5/81 (6%)
Query: 969 TKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVGRRPYTHNLGLEEIGIEKDEKG 1028
+ G + + ++NV +L L +G P + G+E D G
Sbjct: 219 VEAYGDGERDVLGGLKVKNVVT-GDVSDLKVSGLFFAIGHEP---ATKFLDGGVELDSDG 274
Query: 1029 RVPVNSRF-QTVIPNIFAIGD 1048
V QT +P +FA GD
Sbjct: 275 YVVTKPGTTQTSVPGVFAAGD 295
>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding
DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A
2kq5_A
Length = 499
Score = 29.7 bits (67), Expect = 5.5
Identities = 22/200 (11%), Positives = 41/200 (20%), Gaps = 36/200 (18%)
Query: 643 AMKYYEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAAYHLARQYENSGQFDEAIHFY 702
A++ + L +A L A + +
Sbjct: 186 ALETVQRL------------LPVLCQAHGLT--PQQVVAIASNGGGKQALETVQRLLPVL 231
Query: 703 SVA-----------GSCGNAVRLCGQLD-AVESI--ASELNVQSDQDLILKCASYFARRE 748
A S G + + + + A L Q + A E
Sbjct: 232 CQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQA-LE 290
Query: 749 HHDRAVQMY--AIARRYDQA-----LSLIQTKHVPLSEELADLLVPPESDDQRQVVLNTL 801
R + + A Q + + L L Q+ V + +
Sbjct: 291 TVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASH 350
Query: 802 GNCAAVQANYHLATKLFTQA 821
+ QA
Sbjct: 351 DGGKQALETVQRLLPVLCQA 370
Score = 28.9 bits (65), Expect = 9.2
Identities = 12/125 (9%), Positives = 27/125 (21%), Gaps = 26/125 (20%)
Query: 69 AMKYYEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAAYHLARQYENSGQFDEAIHFY 128
A++ + L +A L A + +
Sbjct: 186 ALETVQRL------------LPVLCQAHGLT--PQQVVAIASNGGGKQALETVQRLLPVL 231
Query: 129 SVAGSCGNAVRLCKEQALDDQLWNLALSAGPSEQIEAAT--YLETIE--PDKAVLLYHKA 184
A L +Q + + E ++ + P + V + +
Sbjct: 232 C------QAHGLTPQQV--VAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNS 283
Query: 185 GALHK 189
G
Sbjct: 284 GGKQA 288
>3r9m_A BRO1 domain-containing protein BROX; protein binding; 1.95A {Homo
sapiens} PDB: 3um3_A 3zxp_A 3um2_A 3um1_A 3uly_A 3um0_A
Length = 376
Score = 29.7 bits (66), Expect = 5.5
Identities = 14/95 (14%), Positives = 25/95 (26%), Gaps = 2/95 (2%)
Query: 643 AMKYYEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAAYHLARQYENSGQFDEAIHFY 702
+Y++A LS + + + L A + S + EAI
Sbjct: 218 TANFYQKADHTLSSLEPAYS-AKWRKYLHLKMCFYTAYAYCYHGETLLASDKCGEAIRSL 276
Query: 703 SVAGSCGN-AVRLCGQLDAVESIASELNVQSDQDL 736
A A LC + + +
Sbjct: 277 QEAEKLYAKAEALCKEYGETKGPGPTVKPSGHLFF 311
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein
structure initiative, northeast structural genomics
consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Length = 272
Score = 29.5 bits (67), Expect = 5.8
Identities = 9/63 (14%), Positives = 15/63 (23%), Gaps = 16/63 (25%)
Query: 70 MKYYEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAAYH-LARQYENSGQFDEAIHFY 128
A +Q + A + Y + + N G F AI +
Sbjct: 87 KGQDSLA------------IQQYQAAVDRDT---TRLDMYGQIGSYFYNKGNFPLAIQYM 131
Query: 129 SVA 131
Sbjct: 132 EKQ 134
Score = 29.5 bits (67), Expect = 5.8
Identities = 9/63 (14%), Positives = 15/63 (23%), Gaps = 16/63 (25%)
Query: 644 MKYYEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAAYH-LARQYENSGQFDEAIHFY 702
A +Q + A + Y + + N G F AI +
Sbjct: 87 KGQDSLA------------IQQYQAAVDRDT---TRLDMYGQIGSYFYNKGNFPLAIQYM 131
Query: 703 SVA 705
Sbjct: 132 EKQ 134
>3mzk_B Protein transport protein SEC16; alpha-helical-stack,
beta-propeller; 2.69A {Saccharomyces cerevisiae}
Length = 441
Score = 29.7 bits (66), Expect = 6.1
Identities = 16/119 (13%), Positives = 35/119 (29%), Gaps = 18/119 (15%)
Query: 46 QSKDPVLLKWWAQYIESTEDMDLAMKYYEEARDYLSMVRVLC----FLQD-----FSRAA 96
+ K L KW I+S + + ++ + ++ ++
Sbjct: 74 KLKKKDLTKWMETTIKSISENES-----STDMTIWQLLEMKLNDKVNWKNISKLLYNSDE 128
Query: 97 ELANASGDTAAAYHLARQYENSGQFDEAIHFYSVAGSCGNAVRLCKEQALDDQLWNLAL 155
L S + Y + + G+ A+RL L + + +AL
Sbjct: 129 LLMYLSQPFPNGDMIPNAYRLDINCQMRVLAFLQTGNHDEALRLA----LSKRDYAIAL 183
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural
protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Length = 530
Score = 29.4 bits (65), Expect = 7.0
Identities = 10/90 (11%), Positives = 25/90 (27%), Gaps = 18/90 (20%)
Query: 9 NGDIDRAIRMFEKAETHQQHVPRMLLE---------NTDK----LEKYIIQSKDPV---- 51
+ D A ++FE +P +L + E+ + P
Sbjct: 404 SKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSG 463
Query: 52 -LLKWWAQYIESTEDMDLAMKYYEEARDYL 80
+ + + + D+ +K +
Sbjct: 464 EIWARFLAFESNIGDLASILKVEKRRFTAF 493
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase
110; OGT, glcnac, nucleoporin, O-linked glycosylation,
TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP:
a.118.8.1
Length = 388
Score = 29.4 bits (67), Expect = 7.1
Identities = 29/199 (14%), Positives = 56/199 (28%), Gaps = 45/199 (22%)
Query: 8 KNGDIDRAIRMFEKAETHQQHVPRMLLENTDKLEKYIIQSKDPVLLKWWAQYIESTEDMD 67
+ GD + A R + + + +L + +D
Sbjct: 11 QAGDFEAAERHCMQL-----------WR---------QEPDNTGVLLLLSSIHFQCRRLD 50
Query: 68 LAMKYYEEA--------RDYLSMVRVLCFLQDFSRAAELANAS----GDTAAAYH-LARQ 114
+ + A Y ++ V A E + D Y LA
Sbjct: 51 RSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAA 110
Query: 115 YENSGQFDEAIHFYSVAGSCGNAVRLCKEQALDDQLWNLALSAGPSEQIEAA--TYLETI 172
+G + A+ Y +A++ + +L ++E A YL+ I
Sbjct: 111 LVAAGDMEGAVQAYV------SALQYNPDLY--CVRSDLGNLLKALGRLEEAKACYLKAI 162
Query: 173 E--PDKAVLLYHKAGALHK 189
E P+ AV + +
Sbjct: 163 ETQPNFAVAWSNLGCVFNA 181
>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes,
nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A
{Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X*
3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X*
3nn6_X* 3k7t_A*
Length = 431
Score = 29.4 bits (66), Expect = 7.2
Identities = 17/97 (17%), Positives = 34/97 (35%), Gaps = 22/97 (22%)
Query: 924 VWGRLGAEVTAIEFMNAI--GGMGIDGEVAKQFQRILGKQGMQ------------FKLGT 969
+ G+ + +A+ + + I G V + G +L T
Sbjct: 167 MLGQPADQASALWMLQLVAAHHYSILGVVLSLDEVFSN--GSADLVDAMSQEIPEIRLQT 224
Query: 970 KVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCV 1006
VTG +SGD + VT+++ +++V
Sbjct: 225 VVTGIDQSGDVVNVTVKD------GHAFQAHSVIVAT 255
>3kbt_A Beta-I spectrin, spectrin beta chain, erythrocyte; complex,
spectrin, spectrin repeat, three helix bundle, ANKY
binding, disease mutation, structural protein, ZU5
sandwich; 2.75A {Homo sapiens} PDB: 3kbu_A
Length = 326
Score = 29.2 bits (65), Expect = 7.6
Identities = 25/165 (15%), Positives = 48/165 (29%), Gaps = 10/165 (6%)
Query: 623 YRVLLKWWAQYIESTEDMDLAMKYYEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAA 682
Y L + E+M + E D + ++ + A D
Sbjct: 92 YAGLKDVAEERKRKLENMYHLFQLKRETDD------LEQWISEKELVASSPEMGQDFDHV 145
Query: 683 YHLARQYENSGQFDEAIHFYSVAGSCGNAVRLCGQL-DAVESIASELN-VQSDQDLILKC 740
L ++ + + AI V RL +IA + + +L+
Sbjct: 146 TLLRDKFRDFARETGAIGQERVDNVNAFIERLIDAGHSEAATIAEWKDGLNEMWADLLEL 205
Query: 741 ASYFARREHHDRAVQMYAIARRYDQALSLIQTKHVPLSEELADLL 785
R + + ++ + L LI KH L E++
Sbjct: 206 ID--TRMQLLAASYDLHRYFYTGAEILGLIDEKHRELPEDVGLDA 248
>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc
genomics, joint center for structural genomics, JCSG;
HET: FAD UNL; 2.40A {Staphylococcus aureus}
Length = 369
Score = 29.4 bits (66), Expect = 7.9
Identities = 12/59 (20%), Positives = 17/59 (28%), Gaps = 7/59 (11%)
Query: 949 EVAKQFQRILGKQGMQFKLGTKVTGASKSGDNITVTIENVKDPTKKEELSCDALLVCVG 1007
A+ Q + + T VT S T+ T E D + V G
Sbjct: 89 TYAEYLQVVANHYELNIFENTVVTNISADDAYYTIA-------TTTETYHADYIFVATG 140
>1bx4_A Protein (adenosine kinase); human adenosine kinase, transferase;
HET: ADN; 1.50A {Homo sapiens} SCOP: c.72.1.1 PDB:
2i6a_A* 2i6b_A*
Length = 345
Score = 29.2 bits (66), Expect = 8.0
Identities = 11/27 (40%), Positives = 19/27 (70%)
Query: 890 LIATGSEVTPFPGIEVDEETIVSSTGA 916
++AT SEVT F ++ D++ I+ + GA
Sbjct: 272 IMATESEVTAFAVLDQDQKEIIDTNGA 298
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR
domain, ATPase, protein secret protein transport; 2.00A
{Mycobacterium tuberculosis}
Length = 282
Score = 28.9 bits (64), Expect = 8.1
Identities = 18/97 (18%), Positives = 28/97 (28%), Gaps = 19/97 (19%)
Query: 73 YEEARDYLSMVRVLCFLQDFSRAAELANASGDTAAAYHLARQYENSGQFDEAIHFYS--V 130
+ EA L+ A + A A++LA + G A+
Sbjct: 187 FTEAERRLTEA-----------NDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQ 235
Query: 131 AGSCGNAVRLCKEQALDDQLWNLALSAGPSEQIEAAT 167
V AL D + L +EQI +
Sbjct: 236 TTHPEPKV----AAALKDP--SYRLKTTTAEQIASRA 266
>3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium
tuberculosis}
Length = 700
Score = 29.4 bits (67), Expect = 8.2
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 877 SDGSTEEVKTKNILIATGSEV 897
+ G + ILIATGSEV
Sbjct: 576 AGGLQPGEEPDVILIATGSEV 596
>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase
activity, cell inner membrane, trica acid cycle; HET: FAD
HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A*
1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*
Length = 588
Score = 29.2 bits (66), Expect = 9.4
Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 6/38 (15%)
Query: 1021 GIEKDEKGRV--PVNSRFQTVIPNIFAIGDC----IHG 1052
GI G+ V+P +FA+G+ +HG
Sbjct: 359 GIPTKVTGQALTVNEKGEDVVVPGLFAVGEIACVSVHG 396
>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD;
2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4
d.168.1.1 PDB: 1d4e_A* 1d4c_A*
Length = 572
Score = 28.9 bits (65), Expect = 9.5
Identities = 9/35 (25%), Positives = 16/35 (45%), Gaps = 4/35 (11%)
Query: 1021 GIEKDEKGRVPVNSRFQTVIPNIFAIGDC---IHG 1052
G+ D K V + + I ++A G+ +HG
Sbjct: 509 GLVIDTKAEV-KSEKTAKPITGLYAAGEVTGGVHG 542
>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase,
dehydogenase, steroid catabolism; HET: FAD; 1.60A
{Rhodococcus jostii} PDB: 4at2_A*
Length = 510
Score = 29.2 bits (66), Expect = 9.6
Identities = 13/86 (15%), Positives = 25/86 (29%), Gaps = 28/86 (32%)
Query: 811 YHLATKLFTQAGDKGVKLNLETMMGTKSAAVKALTGGIAHLFKSNKVTQL--NGHGKITG 868
Y L L A GV+ + +V L + G++ G
Sbjct: 202 YMLMKPLVETAEKLGVRAEYDM-----------------------RVQTLVTDDTGRVVG 238
Query: 869 PNTVTVIKSDGSTEEVKTKNILIATG 894
+ + + +++ATG
Sbjct: 239 ---IVAKQYGKEVAVRARRGVVLATG 261
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.133 0.381
Gapped
Lambda K H
0.267 0.0744 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 16,358,780
Number of extensions: 1037054
Number of successful extensions: 3887
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3354
Number of HSP's successfully gapped: 561
Length of query: 1074
Length of database: 6,701,793
Length adjustment: 104
Effective length of query: 970
Effective length of database: 3,798,009
Effective search space: 3684068730
Effective search space used: 3684068730
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (27.6 bits)