BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy14930
         (308 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1XFD|A Chain A, Structure Of A Human A-Type Potassium Channel Accelerating
           Factor Dppx, A Member Of The Dipeptidyl Aminopeptidase
           Family
 pdb|1XFD|B Chain B, Structure Of A Human A-Type Potassium Channel Accelerating
           Factor Dppx, A Member Of The Dipeptidyl Aminopeptidase
           Family
 pdb|1XFD|C Chain C, Structure Of A Human A-Type Potassium Channel Accelerating
           Factor Dppx, A Member Of The Dipeptidyl Aminopeptidase
           Family
 pdb|1XFD|D Chain D, Structure Of A Human A-Type Potassium Channel Accelerating
           Factor Dppx, A Member Of The Dipeptidyl Aminopeptidase
           Family
          Length = 723

 Score = 31.2 bits (69), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 31/123 (25%), Positives = 49/123 (39%), Gaps = 13/123 (10%)

Query: 51  EKGQFSWIILFVTLLTVISVHCAGNVVNTYYDYVLGIDTSRR------SDDRTLVDHILS 104
           EK + SW  + V+    + V C G   + +    L  +  RR       D    V  +L 
Sbjct: 513 EKFEVSWETVMVSSHGAVVVKCDGRG-SGFQGTKLLHEVRRRLGLLEEKDQMEAVRTMLK 571

Query: 105 ESELVSLGVMLYLVSSAGFILLSYISPAKMEHLAAVFFCG-----LSSSFLYSGCLGLKY 159
           E  +    V ++     G+ L +YI PAK E+    F CG     ++   LY+     +Y
Sbjct: 572 EQYIDRTRVAVFGKDYGGY-LSTYILPAKGENQGQTFTCGSALSPITDFKLYASAFSERY 630

Query: 160 TAL 162
             L
Sbjct: 631 LGL 633


>pdb|1YGG|A Chain A, Crystal Structure Of Phosphoenolpyruvate Carboxykinase
           From Actinobacillus Succinogenes
 pdb|1YLH|A Chain A, Crystal Structure Of Phosphoenolpyruvate Carboxykinase
           From Actinobaccilus Succinogenes In Complex With
           Manganese And Pyruvate
          Length = 560

 Score = 28.1 bits (61), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 12/27 (44%), Positives = 18/27 (66%)

Query: 50  IEKGQFSWIILFVTLLTVISVHCAGNV 76
           ++KG FS +  F+ L  V S+HC+ NV
Sbjct: 231 MKKGMFSMMNYFLPLKGVASMHCSANV 257


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.327    0.140    0.430 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,317,038
Number of Sequences: 62578
Number of extensions: 313130
Number of successful extensions: 718
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 717
Number of HSP's gapped (non-prelim): 2
length of query: 308
length of database: 14,973,337
effective HSP length: 99
effective length of query: 209
effective length of database: 8,778,115
effective search space: 1834626035
effective search space used: 1834626035
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (24.3 bits)