BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14930
(308 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9V3R8|UBIA1_DROME UbiA prenyltransferase domain-containing protein 1 homolog
OS=Drosophila melanogaster GN=heix PE=2 SV=1
Length = 359
Score = 377 bits (967), Expect = e-104, Method: Compositional matrix adjust.
Identities = 182/291 (62%), Positives = 235/291 (80%), Gaps = 2/291 (0%)
Query: 18 KLSSYLLALRPWSLSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHCAGNVV 77
KL +YLLALRPWSLSASL+PTLLG ALA + + +FS F+T TV++VHCAGNVV
Sbjct: 60 KLKTYLLALRPWSLSASLVPTLLGSALAYRSQWAE-EFSLATFFLTAFTVVTVHCAGNVV 118
Query: 78 NTYYDYVLGIDTSRRSDDRTLVDHILSESELVSLGVMLYLVSSAGFILLSYISPAKMEHL 137
NTY+D++ GID +++DDRTLVDHIL++ E+VSLG +LY+ GF+LL+ +SPAKMEHL
Sbjct: 119 NTYFDFIKGID-KQKADDRTLVDHILTKDEVVSLGAILYMAGCGGFVLLAVLSPAKMEHL 177
Query: 138 AAVFFCGLSSSFLYSGCLGLKYTALGDVLILMIFGPITVLFAFMSQTGRWEWATICYALP 197
A ++F GLSSSFLY+G +G KY ALGD++IL++FGPI+VLFAFMSQTG +W T+ YA+P
Sbjct: 178 ALIYFGGLSSSFLYTGGIGFKYIALGDLVILILFGPISVLFAFMSQTGHLDWTTMGYAIP 237
Query: 198 VALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVYYAFLLFIPYIVFVVWGMNHS 257
+ALNTEAILHSNNTRD ++DR+ GIVT+AIL+G++ SHV YA LLF PY +F ++G+ +S
Sbjct: 238 LALNTEAILHSNNTRDADNDRRAGIVTLAILIGRTASHVLYAMLLFAPYSLFFIFGLKYS 297
Query: 258 YYYLLPLVTLKSAFSIEKQFRCPDKIHLVPKLTAKLNLYFGFLYVVAVTLA 308
++LLPLVTL AF IEK+FR +HLVP+ TAKLN +FG LYVVA A
Sbjct: 298 LWFLLPLVTLPQAFQIEKRFRNEQTMHLVPRQTAKLNFFFGILYVVACCCA 348
>sp|Q5ZKS8|UBIA1_CHICK UbiA prenyltransferase domain-containing protein 1 OS=Gallus gallus
GN=UBIAD1 PE=2 SV=1
Length = 333
Score = 285 bits (728), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 149/293 (50%), Positives = 202/293 (68%), Gaps = 5/293 (1%)
Query: 16 QEKLSSYLLALRPWSLSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHCAGN 75
++K ++Y+LALRPWS SASL P LG ALA + +G +L + + V++VH AGN
Sbjct: 38 RQKCAAYVLALRPWSFSASLTPVALGSALAYR---AEGALDPRLLVGSAVAVLAVHGAGN 94
Query: 76 VVNTYYDYVLGIDTSRRSDDRTLVDHILSESELVSLGVMLYLVSSAGFILLSYISPAKME 135
+VNTYYD+ GID ++SDDRTLVD IL ++V GV LY V L +S K+E
Sbjct: 95 LVNTYYDFSKGID-HKKSDDRTLVDQILEPQDVVRFGVFLYTVGCICAAGLYAVSTLKLE 153
Query: 136 HLAAVFFCGLSSSFLYSGCLGLKYTALGDVLILMIFGPITVLFAFMSQTGRWEWATICYA 195
HLA V+F GLSSSFLY+G +G KY ALGDV+IL+ FGP+ V+FA Q G + + YA
Sbjct: 154 HLALVYFGGLSSSFLYTGGIGFKYVALGDVVILITFGPLAVMFAHAVQVGYLSVSPLLYA 213
Query: 196 LPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVYYAFLLFIPYIVFVVWGMN 255
+P+AL+TEAILHSNNTRD+ESD+Q GIVT+AI++G ++S+V Y LLF+PY++F V
Sbjct: 214 VPLALSTEAILHSNNTRDMESDQQAGIVTLAIIIGPAFSYVLYTVLLFLPYLIFCVLATR 273
Query: 256 HSYYYLLPLVTLKSAFSIEKQFRCPDKIHLVPKLTAKLNLYFGFLYVVAVTLA 308
++ LPL+T+ AFS+E+QFR + +P+ TAKLNL G YV + LA
Sbjct: 274 YTISMALPLLTIPMAFSLERQFRS-QNFNKIPQRTAKLNLLLGLFYVFGIMLA 325
>sp|Q9Y5Z9|UBIA1_HUMAN UbiA prenyltransferase domain-containing protein 1 OS=Homo sapiens
GN=UBIAD1 PE=1 SV=1
Length = 338
Score = 283 bits (723), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 148/293 (50%), Positives = 201/293 (68%), Gaps = 5/293 (1%)
Query: 16 QEKLSSYLLALRPWSLSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHCAGN 75
++K +SY+LALRPWS SASL P LG ALA + G +L + V++VH AGN
Sbjct: 43 RQKCASYVLALRPWSFSASLTPVALGSALAYR---SHGVLDPRLLVGCAVAVLAVHGAGN 99
Query: 76 VVNTYYDYVLGIDTSRRSDDRTLVDHILSESELVSLGVMLYLVSSAGFILLSYISPAKME 135
+VNTYYD+ GID ++SDDRTLVD IL ++V GV LY + L Y+SP K+E
Sbjct: 100 LVNTYYDFSKGID-HKKSDDRTLVDRILEPQDVVRFGVFLYTLGCVCAACLYYLSPLKLE 158
Query: 136 HLAAVFFCGLSSSFLYSGCLGLKYTALGDVLILMIFGPITVLFAFMSQTGRWEWATICYA 195
HLA ++F GLS SFLY+G +G KY ALGD++IL+ FGP+ V+FA+ Q G + YA
Sbjct: 159 HLALIYFGGLSGSFLYTGGIGFKYVALGDLIILITFGPLAVMFAYAIQVGSLAIFPLVYA 218
Query: 196 LPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVYYAFLLFIPYIVFVVWGMN 255
+P+AL+TEAILHSNNTRD+ESDR+ GIVT+AIL+G ++S++ Y LLF+PY+VF + +
Sbjct: 219 IPLALSTEAILHSNNTRDMESDREAGIVTLAILIGPTFSYILYNTLLFLPYLVFSILATH 278
Query: 256 HSYYYLLPLVTLKSAFSIEKQFRCPDKIHLVPKLTAKLNLYFGFLYVVAVTLA 308
+ LPL+T+ AFS+E+QFR + +P+ TAKLNL G YV + LA
Sbjct: 279 CTISLALPLLTIPMAFSLERQFRS-QAFNKLPQRTAKLNLLLGLFYVFGIILA 330
>sp|Q9DC60|UBIA1_MOUSE UbiA prenyltransferase domain-containing protein 1 OS=Mus musculus
GN=Ubiad1 PE=2 SV=1
Length = 336
Score = 281 bits (720), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 148/293 (50%), Positives = 200/293 (68%), Gaps = 5/293 (1%)
Query: 16 QEKLSSYLLALRPWSLSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHCAGN 75
+ K +SY+LALRPWS SASL P LG ALA + +G +L + V++VH AGN
Sbjct: 41 RHKCASYVLALRPWSFSASLTPVALGSALAYR---SQGVLDPRLLLGCAVAVLAVHGAGN 97
Query: 76 VVNTYYDYVLGIDTSRRSDDRTLVDHILSESELVSLGVMLYLVSSAGFILLSYISPAKME 135
+VNTYYD+ GID ++SDDRTLVD IL ++V GV LY + L Y+S K+E
Sbjct: 98 LVNTYYDFSKGID-HKKSDDRTLVDRILEPQDVVRFGVFLYTLGCVCAACLYYLSALKLE 156
Query: 136 HLAAVFFCGLSSSFLYSGCLGLKYTALGDVLILMIFGPITVLFAFMSQTGRWEWATICYA 195
HLA ++F GLS SFLY+G +G KY ALGD++IL+ FGP+ V+FA+ Q G + YA
Sbjct: 157 HLALIYFGGLSGSFLYTGGIGFKYVALGDLVILITFGPLAVMFAYAVQVGSLAIFPLIYA 216
Query: 196 LPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVYYAFLLFIPYIVFVVWGMN 255
+P+AL+TEAILHSNNTRD+ESDR+ GIVT+AIL+G ++S+V Y LLF+PY++F + +
Sbjct: 217 IPLALSTEAILHSNNTRDMESDREAGIVTLAILIGPTFSYVLYNTLLFVPYLIFTILATH 276
Query: 256 HSYYYLLPLVTLKSAFSIEKQFRCPDKIHLVPKLTAKLNLYFGFLYVVAVTLA 308
S LPL+T+ AFS+E+QFR + +P+ TAKLNL G YV + LA
Sbjct: 277 CSISLALPLLTIPMAFSLERQFRS-QAFNKLPQRTAKLNLLLGLFYVFGIILA 328
>sp|Q28HR4|UBIA1_XENTR UbiA prenyltransferase domain-containing protein 1 OS=Xenopus
tropicalis GN=ubiad1 PE=2 SV=1
Length = 345
Score = 280 bits (717), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 148/296 (50%), Positives = 203/296 (68%), Gaps = 5/296 (1%)
Query: 13 TMLQEKLSSYLLALRPWSLSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHC 72
T ++K ++Y+LALRPWS SASLIP LG A+A + G ++ V + V++VH
Sbjct: 49 TSFKQKCATYVLALRPWSFSASLIPVALGTAIAYR---SGGSLDLLLFVVCAVAVLAVHG 105
Query: 73 AGNVVNTYYDYVLGIDTSRRSDDRTLVDHILSESELVSLGVMLYLVSSAGFILLSYISPA 132
AGN+VNTYYD+ GID ++SDDRTLVDHIL ++V GV LY + L +IS
Sbjct: 106 AGNLVNTYYDFSKGID-HKKSDDRTLVDHILEPQDVVRFGVFLYTLGCLCAACLYFISKL 164
Query: 133 KMEHLAAVFFCGLSSSFLYSGCLGLKYTALGDVLILMIFGPITVLFAFMSQTGRWEWATI 192
K+EHLA ++F GLSSSFLY+G +G KY ALGD++IL+ FGP+ V+FA Q G +
Sbjct: 165 KLEHLALIYFGGLSSSFLYTGGIGFKYVALGDLVILITFGPLAVMFAHAVQVGYLAVTPL 224
Query: 193 CYALPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVYYAFLLFIPYIVFVVW 252
YA+P+AL+TEAILHSNNTRD+ESDRQ GIVT+AIL+G +S++ Y L+F+PY++F +
Sbjct: 225 LYAVPLALSTEAILHSNNTRDMESDRQAGIVTLAILVGPMFSYMLYNLLVFLPYLIFSIL 284
Query: 253 GMNHSYYYLLPLVTLKSAFSIEKQFRCPDKIHLVPKLTAKLNLYFGFLYVVAVTLA 308
++ LPL+T+ AFS+E+QFR + +P+ TAKLNL G YV + LA
Sbjct: 285 ATRYTISMALPLLTIPLAFSLERQFRS-QNFNKIPQRTAKLNLLVGLFYVFGIVLA 339
>sp|D3ZG27|UBIA1_RAT UbiA prenyltransferase domain-containing protein 1 OS=Rattus
norvegicus GN=Ubiad1 PE=3 SV=1
Length = 338
Score = 278 bits (712), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 147/293 (50%), Positives = 199/293 (67%), Gaps = 5/293 (1%)
Query: 16 QEKLSSYLLALRPWSLSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHCAGN 75
++K +SY+LALRPWS SASL P LG ALA + +G +L + V++VH AGN
Sbjct: 43 RQKCASYVLALRPWSFSASLTPVALGSALAYR---SQGVLDPRLLLGCAVAVLAVHGAGN 99
Query: 76 VVNTYYDYVLGIDTSRRSDDRTLVDHILSESELVSLGVMLYLVSSAGFILLSYISPAKME 135
+VNTYYD+ GID ++SDDRTLVD IL ++V GV LY + L Y+S K+E
Sbjct: 100 LVNTYYDFSKGID-HKKSDDRTLVDRILEPQDVVRFGVFLYTLGCVCAAYLYYLSTLKLE 158
Query: 136 HLAAVFFCGLSSSFLYSGCLGLKYTALGDVLILMIFGPITVLFAFMSQTGRWEWATICYA 195
HLA ++F GLS SFLY+G +G KY ALGD++IL+ FGP+ V+FA+ Q G + YA
Sbjct: 159 HLALIYFGGLSGSFLYTGGIGFKYVALGDLVILITFGPLAVMFAYAVQVGSLAIFPLVYA 218
Query: 196 LPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVYYAFLLFIPYIVFVVWGMN 255
+P+AL+TEAILHSNNTRD+ESDR+ GIVT+AIL+G + S++ Y LLF+PY++F + +
Sbjct: 219 IPLALSTEAILHSNNTRDMESDREAGIVTLAILIGPTLSYILYNTLLFLPYLIFTILATH 278
Query: 256 HSYYYLLPLVTLKSAFSIEKQFRCPDKIHLVPKLTAKLNLYFGFLYVVAVTLA 308
S LPL+T AFS+E+QFR + +P+ TAKLNL G YV + LA
Sbjct: 279 CSISLALPLLTSPMAFSLERQFRS-QAFNKLPQRTAKLNLLLGLFYVFGIILA 330
>sp|D2HKB0|UBIA1_AILME UbiA prenyltransferase domain-containing protein 1 OS=Ailuropoda
melanoleuca GN=UBIAD1 PE=3 SV=1
Length = 337
Score = 278 bits (710), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 147/293 (50%), Positives = 200/293 (68%), Gaps = 5/293 (1%)
Query: 16 QEKLSSYLLALRPWSLSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHCAGN 75
++K +SY+LALRPWS SASL P LG ALA + +G +L + V++VH AGN
Sbjct: 42 RQKCASYVLALRPWSFSASLTPVALGSALAYR---SQGVLDPRLLVGCAVAVLAVHGAGN 98
Query: 76 VVNTYYDYVLGIDTSRRSDDRTLVDHILSESELVSLGVMLYLVSSAGFILLSYISPAKME 135
+VNTYYD+ GID ++SDDRTLVD IL ++V GV LY + L +SP K+E
Sbjct: 99 LVNTYYDFSKGID-HKKSDDRTLVDRILEPQDVVLFGVFLYTLGCVCAACLYCLSPLKLE 157
Query: 136 HLAAVFFCGLSSSFLYSGCLGLKYTALGDVLILMIFGPITVLFAFMSQTGRWEWATICYA 195
HLA ++F GLS SFLY+G +G KY ALGD++IL+ FGP+ V+FA+ Q G + YA
Sbjct: 158 HLALIYFGGLSGSFLYTGGIGFKYVALGDLVILITFGPLAVMFAYAVQVGSLAVFPLVYA 217
Query: 196 LPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVYYAFLLFIPYIVFVVWGMN 255
+P+AL+TEA+LHSNNTRD+ESDR+ GIVT+AIL+G + S+V Y LLF+PY++F + +
Sbjct: 218 IPLALSTEAVLHSNNTRDMESDREAGIVTLAILIGPTLSYVLYNTLLFLPYLIFSILATH 277
Query: 256 HSYYYLLPLVTLKSAFSIEKQFRCPDKIHLVPKLTAKLNLYFGFLYVVAVTLA 308
S LPL+T+ AFS+E+QFR + +P+ TAKLNL G YV + LA
Sbjct: 278 CSISLALPLLTVPMAFSLERQFRS-QTFNKLPQRTAKLNLLLGLFYVFGIILA 329
>sp|Q54K99|UBIA1_DICDI UbiA prenyltransferase domain-containing protein 1 OS=Dictyostelium
discoideum GN=ubiad1 PE=3 SV=1
Length = 330
Score = 148 bits (373), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 102/305 (33%), Positives = 162/305 (53%), Gaps = 27/305 (8%)
Query: 18 KLSSYLLALRPWSLSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHCAGNVV 77
KL +LA RPWSL+ S+ L+G ALA + E +F I+L + L+ +S+ GNVV
Sbjct: 37 KLMGIILATRPWSLTISVTSVLVGSALAFR---EIREFDSIMLSIILVGAVSLQALGNVV 93
Query: 78 NTYYDYVLGIDTSRRSDDRTLVDHILSESELVSL------------GVMLYLVSSAGFIL 125
N++YD G DT +S DRT+ D L+E +++L G+M++ + + I
Sbjct: 94 NSFYDCKNGNDTKEKSADRTMFDFGLTEGNIINLIWYLLIQCAICLGLMIFRMDNIKCI- 152
Query: 126 LSYISPAKMEHLAAVFFCGLSSSFLYSGC-LGLKYTALGDVLILMIFGPITVLFAFMSQT 184
+E++ + G + Y+ +GLKY LGD+ I + FGPI V AF+SQT
Sbjct: 153 --------VENILPLGAFGFILNISYTAAPIGLKYIGLGDLTIFLCFGPILVQSAFISQT 204
Query: 185 GRWEWATICYALPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVYYAFLLFI 244
+ Y++P+AL A+LH NNTRD+++D + G +T+A LG + YA L
Sbjct: 205 HYHDSLAYFYSIPLALTIVAVLHVNNTRDIKADTEAGSITLASKLGFKNCYYIYAGLYLF 264
Query: 245 PYIVFVVWGMNHSYYYL-LPLVTLKSAFSIEKQFRCPDKIHLVPKLTAKLNLYFGFLYVV 303
YI ++ Y L LPL+ + S+ QF+ K+ + + T +L+ +FG L +
Sbjct: 265 AYIYLFKLSLDIDKYILNLPLILIPKIISLINQFK-NKKLEDLTEKTGQLSFFFGGLNAI 323
Query: 304 AVTLA 308
V L+
Sbjct: 324 GVLLS 328
>sp|P39582|MENA_BACSU Probable 1,4-dihydroxy-2-naphthoate octaprenyltransferase
OS=Bacillus subtilis (strain 168) GN=menA PE=3 SV=1
Length = 311
Score = 102 bits (255), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 89/309 (28%), Positives = 149/309 (48%), Gaps = 22/309 (7%)
Query: 4 NNNNKNIWFTMLQ-EKLSSYLLAL-RPWSLSASLIPTLLGCALA---VKLPIEKGQFSWI 58
N NK T Q E + L L RP +L+AS +P LLG LA VK+ + +
Sbjct: 2 NQTNKGEGQTAPQKESMGQILWQLTRPHTLTASFVPVLLGTVLAMFYVKVDL-------L 54
Query: 59 ILFVTLLTVISVHCAGNVVNTYYDYVLGIDTSRRSD-DRTLVDHILSESELVSLGVMLYL 117
+ L + + + A N+ N YYD+ G+DT+ +V H + ++ L + Y
Sbjct: 55 LFLAMLFSCLWIQIATNLFNEYYDFKRGLDTAESVGIGGAIVRHGMKPKTILQLALASYG 114
Query: 118 VSSAGFILLSYISPAKMEHLAAVFFCGLSSSFLYSGC-LGLKYTALGDVLILMIFGPITV 176
++ +L YI + LA + G++ +LY+G L + YT G++ + G + V
Sbjct: 115 IA---ILLGVYICASSSWWLALIGLVGMAIGYLYTGGPLPIAYTPFGELFSGICMGSVFV 171
Query: 177 LFAFMSQTGRWEWATICYALPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHV 236
L +F QT + +I ++P+A+ AI SNN RD+E D++ G T+AIL+G +
Sbjct: 172 LISFFIQTDKINMQSILISIPIAILVGAINLSNNIRDIEEDKKGGRKTLAILMGHKGAVT 231
Query: 237 YYAFLLFIPYI---VFVVWGMNHSYYYLLPLVTLKSAFSIEK--QFRCPDKIHLVPKLTA 291
A + YI V+ G + +++ L K +++ Q P + + K TA
Sbjct: 232 LLAASFAVAYIWVVGLVITGAASPWLFVVFLSVPKPVQAVKGFVQNEMPMNMIVAMKSTA 291
Query: 292 KLNLYFGFL 300
+ N +FGFL
Sbjct: 292 QTNTFFGFL 300
>sp|P44739|MENA_HAEIN 1,4-dihydroxy-2-naphthoate octaprenyltransferase OS=Haemophilus
influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
GN=menA PE=3 SV=1
Length = 308
Score = 77.4 bits (189), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 80/276 (28%), Positives = 131/276 (47%), Gaps = 26/276 (9%)
Query: 14 MLQEKLSSYLLALRPWSLSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHCA 73
M+ EKL + RP +L +L G AL + F+ +++ + LLT I +
Sbjct: 6 MINEKLKMWWETARPKTLPLALASIFTGSALGYWANPQG--FNGLVMVLCLLTTILLQVL 63
Query: 74 GNVVNTYYDYVLGIDTSRRSDD-RTLVDHILSESELVSLGVMLYLVSSAGFILLSYISPA 132
N N Y D+ G DT R R + +S EL G++L +++S F+ S++
Sbjct: 64 SNFANDYGDHQKGSDTEERIGPLRGIQKGAISAKEL-KWGLILMVMAS--FLSGSFLIGI 120
Query: 133 KMEHLAAVF-FCGLS-----SSFLYSGCLGLK---YTALGDVLILMIFGPITVLFAFMSQ 183
E+L+ +F F GL ++ Y+ +G+K Y LGD+ +L+ FG + V + Q
Sbjct: 121 AYENLSDLFAFAGLGILAIVAAITYT--VGVKPYGYMGLGDISVLVFFGLLGVGGTYYLQ 178
Query: 184 TGRWEWATICYALPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVYYAFLLF 243
T + I A+ L A+L+ NN RD+E D + G T+A+ LG VY+ LL
Sbjct: 179 THSIDSHIILPAIGSGLLASAVLNINNLRDIEQDAKAGKNTLAVRLGAYKGRVYHCILLS 238
Query: 244 IP---YIVFVV-----WGMNHSYYYLLPLVTLKSAF 271
+ Y+ F V W N+ + +PL+ + F
Sbjct: 239 VAALCYLAFAVATAISW-TNYLFVLAMPLLAKHAIF 273
>sp|P32166|MENA_ECOLI 1,4-dihydroxy-2-naphthoate octaprenyltransferase OS=Escherichia
coli (strain K12) GN=menA PE=1 SV=1
Length = 308
Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 80/309 (25%), Positives = 148/309 (47%), Gaps = 19/309 (6%)
Query: 14 MLQEKLS---SYLLALRPWSLSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISV 70
M ++++S ++L +LRP +L + ++G ALA +G F ++ + L+T +
Sbjct: 1 MTEQQISRTQAWLESLRPKTLPLAFAAIIVGTALA----WWQGHFDPLVALLALITAGLL 56
Query: 71 HCAGNVVNTYYDYVLGIDTSRRSDD-RTLVDHILSESELV-SLGVMLYLVSSAGFILLSY 128
N+ N Y D V G D R R + ++++ E+ +L + + L+ +G L++
Sbjct: 57 QILSNLANDYGDAVKGSDKPDRIGPLRGMQKGVITQQEMKRALIITVVLICLSGLALVAV 116
Query: 129 ISPAKMEHLAAVFFCGLS--SSFLYS-GCLGLKYTALGDVLILMIFGPITVLFAFMSQTG 185
+ + + GLS ++ Y+ G Y LGD+ +L+ FG ++V+ ++ Q
Sbjct: 117 ACHTLADFVGFLILGGLSIIAAITYTVGNRPYGYIGLGDISVLVFFGWLSVMGSWYLQAH 176
Query: 186 RWEWATICYALPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVYYAFLLFIP 245
A I A L A+L+ NN RD+ SDR+ G T+ + LG+ + Y+A LL
Sbjct: 177 TLIPALILPATACGLLATAVLNINNLRDINSDRENGKNTLVVRLGEVNARRYHACLLMGS 236
Query: 246 YIVFVVWGMNHSYYYLLPLVTLKSAFSIEKQ----FRCPDKIHLVPKL--TAKLNLYFGF 299
+ ++ + S + L + L +A + KQ R D + + P L T K L
Sbjct: 237 LVCLALFNL-FSLHSLWGWLFLLAAPLLVKQARYVMREMDPVAMRPMLERTVKGALLTNL 295
Query: 300 LYVVAVTLA 308
L+V+ + L+
Sbjct: 296 LFVLGIFLS 304
>sp|P65650|MENA_MYCTU Probable 1,4-dihydroxy-2-naphthoate octaprenyltransferase
OS=Mycobacterium tuberculosis GN=menA PE=3 SV=1
Length = 292
Score = 55.1 bits (131), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 84/173 (48%), Gaps = 8/173 (4%)
Query: 75 NVVNTYYDYVLGIDTSRRSDDRTLVDHILSESELVSLGVMLYLVSSAGFILLSYISPAKM 134
N N Y D + G D R R + + + +++ + + + ++L+ +S +
Sbjct: 56 NYANDYSDGIRGTDDDRVGPVRLVGSRLATPRSVLTAAMTSLALGALAGLVLALLSAPWL 115
Query: 135 EHLAAVFFCGLSSSFLYSGCLGLK---YTALGDVLILMIFGPITVLFAFMSQTGRWEWAT 191
+ A+ G ++LY+G G K Y G++ + + FGP+ VL +Q R +W
Sbjct: 116 IAVGAICIAG---AWLYTG--GSKPYGYAGFGELAVFVFFGPVAVLGTQYTQALRVDWVG 170
Query: 192 ICYALPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVYYAFLLFI 244
+ A+ + ++L +NN RD+ +D + +T+A+ LG + + + Y LL +
Sbjct: 171 LAQAVATGALSCSVLVANNLRDIPTDARADKITLAVRLGDARTRMLYQGLLAV 223
>sp|P65651|MENA_MYCBO Probable 1,4-dihydroxy-2-naphthoate octaprenyltransferase
OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)
GN=menA PE=3 SV=1
Length = 292
Score = 55.1 bits (131), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 84/173 (48%), Gaps = 8/173 (4%)
Query: 75 NVVNTYYDYVLGIDTSRRSDDRTLVDHILSESELVSLGVMLYLVSSAGFILLSYISPAKM 134
N N Y D + G D R R + + + +++ + + + ++L+ +S +
Sbjct: 56 NYANDYSDGIRGTDDDRVGPVRLVGSRLATPRSVLTAAMTSLALGALAGLVLALLSAPWL 115
Query: 135 EHLAAVFFCGLSSSFLYSGCLGLK---YTALGDVLILMIFGPITVLFAFMSQTGRWEWAT 191
+ A+ G ++LY+G G K Y G++ + + FGP+ VL +Q R +W
Sbjct: 116 IAVGAICIAG---AWLYTG--GSKPYGYAGFGELAVFVFFGPVAVLGTQYTQALRVDWVG 170
Query: 192 ICYALPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVYYAFLLFI 244
+ A+ + ++L +NN RD+ +D + +T+A+ LG + + + Y LL +
Sbjct: 171 LAQAVATGALSCSVLVANNLRDIPTDARADKITLAVRLGDARTRMLYQGLLAV 223
>sp|P73962|MENA_SYNY3 Probable 1,4-dihydroxy-2-naphthoate octaprenyltransferase
OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=menA
PE=3 SV=1
Length = 307
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/213 (24%), Positives = 101/213 (47%), Gaps = 15/213 (7%)
Query: 22 YLLALRPWSLSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHCAGNVVNTYY 81
+L A++P + +++P +G A+A L GQ+ + + LL+ I++ N+ N +
Sbjct: 19 WLAAIKPPMYTVAVVPITVGSAVAYGL---TGQWHGDVFTIFLLSAIAIIAWINLSNDVF 75
Query: 82 DYVLGIDTSRRSDDRTLVDHILSESELVSLGVMLYLVSSA-GFILLSYISP--AKMEHLA 138
D GID + V ++ LV L +L++ G + +S+ + +E +
Sbjct: 76 DSDTGIDVRKAHS----VVNLTGNRNLVFLISNFFLLAGVLGLMSMSWRAQDWTVLELIG 131
Query: 139 AVFFCGLSSSFLYSGC-LGLKYTALGDVLILMIFGPITVLFAFMSQTGRWEWATICYALP 197
F G + Y G L Y LG+++ L+ FGP+ + A+ SQ+ + W + ++
Sbjct: 132 VAIFLG----YTYQGPPFRLGYLGLGELICLITFGPLAIAAAYYSQSQSFSWNLLTPSVF 187
Query: 198 VALNTEAILHSNNTRDLESDRQVGIVTVAILLG 230
V ++T IL ++ +E D G + + LG
Sbjct: 188 VGISTAIILFCSHFHQVEDDLAAGKKSPIVRLG 220
>sp|O07134|MENA_MYCLE Probable 1,4-dihydroxy-2-naphthoate octaprenyltransferase
OS=Mycobacterium leprae (strain TN) GN=menA PE=3 SV=1
Length = 294
Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 82/178 (46%), Gaps = 4/178 (2%)
Query: 75 NVVNTYYDYVLGIDTSRRSDDRTLVDHILSESELVSLGVMLYLVSSAGFILLSYISPAKM 134
N N Y D + G D R R + + +++ V+ VS+ + L+ +S +
Sbjct: 56 NYANDYSDGIRGTDDHRAGPMRLVGSRLAFPRSVLTAAVVGLTVSTVAGLALALLSAPWL 115
Query: 135 EHLAAVFFCGLSSSFLYSGCLG-LKYTALGDVLILMIFGPITVLFAFMSQTGRWEWATIC 193
+ A G ++LY+G Y G+V + + FG + VL +Q R +W +
Sbjct: 116 IMVGATCIAG---AWLYTGSSKPYGYKGFGEVAVFVFFGLVAVLGTEYTQALRVDWVGLV 172
Query: 194 YALPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVYYAFLLFIPYIVFVV 251
A+ + ++L +NN RD+ +D Q T+A+ LG +++ Y LL ++ VV
Sbjct: 173 LAVSTGALSSSVLVANNLRDIHTDTQSHKFTLAVRLGDAHTRQLYQALLVATGVLTVV 230
>sp|Q21DY7|UBIA_SACD2 4-hydroxybenzoate octaprenyltransferase OS=Saccharophagus degradans
(strain 2-40 / ATCC 43961 / DSM 17024) GN=ubiA PE=3 SV=1
Length = 299
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 93/207 (44%), Gaps = 18/207 (8%)
Query: 27 RPWSLSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHCAGNVVNTYYDYVLG 86
RP + L PTL +A G W +L + +L V+ + AG V+N + D
Sbjct: 29 RPIGIYLVLWPTLWSLWIA-----ADGLPDWDVLVIFVLGVVLMRSAGCVINDFADR--K 81
Query: 87 IDTS-RRSDDRTLVDHILSESELVSLGVMLYLVSSAGFILLSYISPAKMEHLAAVFFCGL 145
ID RR+ +R LV +++ + V V L +++ FIL+ + +P ++ + F G
Sbjct: 82 IDGHVRRTANRPLVTGLITPKQAVLFFVALLVIA---FILVLFTNPLTIK----LSFGGA 134
Query: 146 SSSFLYSGCLGLKYTALGDVLILMIFGPITVLFAFMSQTGRWEWATICYALPVALNTEAI 205
+F Y +YT L +++ F ++ AF +QT + A V L T A
Sbjct: 135 LLAFCYP--FMKRYTQLPQIVLGAAFA-WSIPMAFAAQTNQLPEAIWVLYTAVVLWTVAY 191
Query: 206 LHSNNTRDLESDRQVGIVTVAILLGQS 232
D E D ++G+ + AIL G
Sbjct: 192 DTFYAMADREDDLKIGVKSTAILFGDQ 218
>sp|A7N0X0|UBIA_VIBHB 4-hydroxybenzoate octaprenyltransferase OS=Vibrio harveyi (strain
ATCC BAA-1116 / BB120) GN=ubiA PE=3 SV=1
Length = 284
Score = 45.1 bits (105), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 58/222 (26%), Positives = 101/222 (45%), Gaps = 21/222 (9%)
Query: 14 MLQEKLSSYLLALRPWSLSASLI---PTLLGCALAVKLPIEKGQFSWIILFVTLLTVISV 70
M EK +Y +R SL+ PT+ +A +G SW +L V +L V +
Sbjct: 1 MSAEKAKAYWQLMRMDRPIGSLLLLWPTVWALVIA-----AQGMPSWNVLIVFVLGVFLM 55
Query: 71 HCAGNVVNTYYDYVLGIDTS-RRSDDRTLVDHILSESELVSLGVMLYLVSSAGFILLSYI 129
AG V+N + D +D +R+ R L ++ E + L ++L + S F+L+ +
Sbjct: 56 RSAGCVINDFADR--KVDGHVKRTKQRPLPSGKVTSKEAIGLFLVLGISS---FLLVLTM 110
Query: 130 SPAKMEHLAAVFFCGLSSSFLYSGCLGLKYTALGDVLILMIFGPITVLFAFMSQTGRWEW 189
+P ++ + F G+ +F+Y +YT L + + + F + A+ +QTG W
Sbjct: 111 NPLTIK----LSFAGIFLAFIYP--FMKRYTYLPQLFLGLAFS-WAIPMAWAAQTGELPW 163
Query: 190 ATICYALPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQ 231
+ AL T A D + D ++GI + AIL G+
Sbjct: 164 IVWFVFVINALWTIAYDTQYAMVDRDDDLKIGIKSTAILFGR 205
>sp|A8KYS6|COXX_FRASN Protoheme IX farnesyltransferase OS=Frankia sp. (strain EAN1pec)
GN=ctaB PE=3 SV=1
Length = 313
Score = 44.7 bits (104), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 72/155 (46%), Gaps = 10/155 (6%)
Query: 39 LLGCALAVKLPIEKGQFSWIILFVTLLTVISVHCAGNVVNTYYDYVLGIDT-SRRSDDRT 97
LL + V L E+G SW ++ VTLL + N +N Y D ID R+ R
Sbjct: 44 LLVSTVPVMLLAERGMPSWWLIAVTLLAGTLSAGSANTINCYVDR--DIDQLMGRTKRRP 101
Query: 98 LVDHILSESELVSLGVMLYLVSSAGFILLSYISPAKMEHLAAVFFCGLSSSFLYSGCLGL 157
LV ++ ++ + G+ L ++S+ F LL + A + A F+ F+Y+ LGL
Sbjct: 102 LVREVVEPAQALRFGIALGIISTLMFGLLVNWTSAVLSVGAIAFYV-----FVYT--LGL 154
Query: 158 KYTALGDVLILMIFGPITVLFAFMSQTGRWEWATI 192
K + +++I G VL + + TG W +
Sbjct: 155 KRRSPSNIVIGGAAGCFPVLIGWSAVTGTVGWPAV 189
>sp|Q6MBY2|COXX_PARUW Protoheme IX farnesyltransferase OS=Protochlamydia amoebophila
(strain UWE25) GN=ctaB PE=3 SV=1
Length = 283
Score = 42.0 bits (97), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 51/102 (50%), Gaps = 12/102 (11%)
Query: 22 YLLALRPWSLSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHCAGNVVNTYY 81
YLL +P + +L+ + G LA KGQF + + F T+L + + +G V N Y
Sbjct: 5 YLLLTKPGIILGNLVTVMAGFLLA-----SKGQFQFGLFFSTILGLAFIMASGCVFNNYI 59
Query: 82 DYVLGIDTSR---RSDDRTLVDHILSESELVSLGVMLYLVSS 120
D ++ R R+ +R LV ++ E + + G+ L +V +
Sbjct: 60 D----LEKDRLMKRTQNRPLVIGVIFEKQAIVFGLALAIVGA 97
>sp|Q87KM9|UBIA_VIBPA 4-hydroxybenzoate octaprenyltransferase OS=Vibrio parahaemolyticus
serotype O3:K6 (strain RIMD 2210633) GN=ubiA PE=3 SV=1
Length = 284
Score = 40.4 bits (93), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 60/224 (26%), Positives = 105/224 (46%), Gaps = 25/224 (11%)
Query: 14 MLQEKLSSYLLALRPWSLSASLI---PTLLGCALAVKLPIEKGQFSWIILFVTLLTVISV 70
M EK +Y +R SL+ PT+ +A +G SW +L V +L V +
Sbjct: 1 MSAEKAKAYWQLMRMDRPIGSLLLLWPTVWALVIA-----AQGIPSWDVLIVFVLGVFLM 55
Query: 71 HCAGNVVNTYYDYVLGIDTS-RRSDDRTLVDHILSESELVSLGVMLYLVSSAGFILLSYI 129
AG V+N + D +D +R+ R L ++ E ++G+ L L S+ F+L+ +
Sbjct: 56 RSAGCVINDFADR--KVDGHVKRTKQRPLPSGKVTAKE--AIGLFLVLAVSS-FLLVLTM 110
Query: 130 SPAKMEHLAAVFFCGLSSSFLYSGCLGLKYTALGDVLILMIFGPITVLFAFMSQTGRWEW 189
+P ++ + F GL +F+Y +YT + + + + F + A+ +QTG E
Sbjct: 111 NPLTIQ----LSFAGLVLAFIYP--FMKRYTHIPQLFLGLAFS-WAIPMAWAAQTG--EL 161
Query: 190 ATICYALPV--ALNTEAILHSNNTRDLESDRQVGIVTVAILLGQ 231
+ + + V AL T A D + D ++GI + AIL G+
Sbjct: 162 PVMVWFVFVINALWTIAYDTQYAMVDRDDDLKIGIKSTAILFGR 205
>sp|Q3IHW5|UBIA_PSEHT 4-hydroxybenzoate octaprenyltransferase OS=Pseudoalteromonas
haloplanktis (strain TAC 125) GN=ubiA PE=3 SV=1
Length = 292
Score = 38.1 bits (87), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 86/180 (47%), Gaps = 27/180 (15%)
Query: 65 LTVISVHCAGNVVNTYYDYVLGIDTS-RRSDDRTLVDHILSESELVSLGVMLYLVSSAGF 123
L V+ + AG V+N + D ID S +R+ R LV +S E +SL ++L V+ F
Sbjct: 55 LGVVIMRSAGCVINDFADR--KIDGSVKRTMQRPLVSGQVSSGEAISLFILLITVA---F 109
Query: 124 ILLSYISPAKMEHLAAVFFCGLSSSFLYSGCLGLKYTALGDVLILMIFGPITVLFAFMSQ 183
+L+ +S + + F L+ +F Y +YT L V++ FG + AFM+
Sbjct: 110 LLVLMLS----VNTILLSFGALALAFCYP--FMKRYTQLPQVVLGAAFG-WAIPMAFMAS 162
Query: 184 TGR---WEW----ATICYALPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHV 236
W A IC+ VA +T +++ RD D ++G+ + AIL G+ H+
Sbjct: 163 INALPIQAWLLFIANICWT--VAYDT---MYAMVDRD--DDLKIGVKSTAILFGKYDRHI 215
>sp|B7VMA0|UBIA_VIBSL 4-hydroxybenzoate octaprenyltransferase OS=Vibrio splendidus
(strain LGP32) GN=ubiA PE=3 SV=1
Length = 284
Score = 38.1 bits (87), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 91/183 (49%), Gaps = 17/183 (9%)
Query: 52 KGQFSWIILFVTLLTVISVHCAGNVVNTYYDYVLGIDTS-RRSDDRTLVDHILSESELVS 110
KG + +L V +L V+ + AG V+N + D +D +R+ R L ++S E +
Sbjct: 37 KGMPDFDVLVVFILGVVLMRSAGCVINDFADR--KVDGHVKRTKQRPLPSGLVSSKEAIV 94
Query: 111 LGVMLYLVSSAGFILLSYISPAKMEHLAAVFFCGLSSSFLYSGCLGLKYTALGDVLILMI 170
L ++L +VS F+L+ ++P ++ + F G+ +F+Y ++T L + + +
Sbjct: 95 LFLVLAVVS---FLLVLTMNPLTIK----LSFIGVGLAFIYP--FMKRFTHLPQLFLGLA 145
Query: 171 FGPITVLFAFMSQTGRWEWATICYALPV--ALNTEAILHSNNTRDLESDRQVGIVTVAIL 228
F + A+ +QT E +I + + V AL T A D + D ++GI + AIL
Sbjct: 146 FS-WAIPMAWAAQTN--ELPSIVWFIFVINALWTIAYDTQYAMVDRDDDLKIGIKSTAIL 202
Query: 229 LGQ 231
G+
Sbjct: 203 FGR 205
>sp|A6VRF6|CYOE_MARMS Protoheme IX farnesyltransferase OS=Marinomonas sp. (strain MWYL1)
GN=cyoE PE=3 SV=1
Length = 296
Score = 37.7 bits (86), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 53/113 (46%), Gaps = 11/113 (9%)
Query: 19 LSSYLLALRPWSLSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHCAGNVVN 78
YL +P + +LI G LA +G+ WI++ T++ + V +G +N
Sbjct: 2 FKRYLQVTKPGIIMGNLISVAGGFFLA-----SRGEIDWILMLATVIGLSLVVASGCAIN 56
Query: 79 TYYDYVLGIDTS-RRSDDRTLVDHILSESELVSLGVMLYLVSSAGFILLSYIS 130
Y D ID +R+ +R V+ +S G++L ++ GF LLSY +
Sbjct: 57 NYIDR--DIDAKMQRTRNRVTVNGEMSGKAAFFHGIVLGVI---GFALLSYFT 104
>sp|Q2JCG7|COXX_FRASC Protoheme IX farnesyltransferase OS=Frankia sp. (strain CcI3)
GN=ctaB PE=3 SV=1
Length = 289
Score = 37.7 bits (86), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 66/143 (46%), Gaps = 10/143 (6%)
Query: 51 EKGQFSWIILFVTLLTVISVHCAGNVVNTYYDYVLGIDTSR-RSDDRTLVDHILSESELV 109
E+G S ++ VTL+ + N +N Y D ID R+ R LV ++ +E +
Sbjct: 32 ERGVPSLRLIAVTLVAGTLAAGSANTINCYVDR--DIDQMMGRTKRRPLVRATVTPTEAL 89
Query: 110 SLGVMLYLVSSAGFILLSYISPAKMEHLAAVFFCGLSSSFLYSGCLGLKYTALGDVLILM 169
+ G+++ +VS+ F L A + A F+ F+Y+ LGLK +++I
Sbjct: 90 TFGIVIGIVSTLLFGFLVNWPSALLADGAIAFYV-----FVYT--LGLKRRTPSNIVIGG 142
Query: 170 IFGPITVLFAFMSQTGRWEWATI 192
G VL + + TG WA +
Sbjct: 143 AAGCFPVLIGWSAVTGTVGWAAV 165
>sp|Q0RH20|COXX_FRAAA Protoheme IX farnesyltransferase OS=Frankia alni (strain ACN14a)
GN=ctaB PE=3 SV=2
Length = 289
Score = 37.7 bits (86), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 68/146 (46%), Gaps = 16/146 (10%)
Query: 51 EKGQFSWIILFVTLLTVISVHCAGNVVNTYYDY----VLGIDTSRRSDDRTLVDHILSES 106
++G S ++ VTL+ + N +N Y D V+G R+ R LV ++ +
Sbjct: 32 DRGMPSLWLIAVTLVAGTLAAGSANTINCYVDRDIDQVMG-----RTKRRPLVRATVTPT 86
Query: 107 ELVSLGVMLYLVSSAGFILLSYISPAKMEHLAAVFFCGLSSSFLYSGCLGLKYTALGDVL 166
E ++ G+++ +VS+ F LL A + A F+ F+Y+ LGLK +++
Sbjct: 87 EALTFGIVIGIVSTLMFGLLVNWPSALLADGAIAFYV-----FVYT--LGLKRRTPSNIV 139
Query: 167 ILMIFGPITVLFAFMSQTGRWEWATI 192
I G VL + + TG W+ +
Sbjct: 140 IGGAAGCFPVLIGWSAVTGTVGWSAV 165
>sp|Q5HZQ9|PCX4_XENLA Pecanex-like protein 4 OS=Xenopus laevis GN=pcnxl4 PE=2 SV=1
Length = 1184
Score = 37.0 bits (84), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 66/164 (40%), Gaps = 46/164 (28%)
Query: 127 SYISPAKMEHLAAVFFCGLSSSFLYSGCLGLKYTALGDVLILMIFGPITVLFAFMSQTGR 186
+I+ L A CGL + +L L L Y +G +++ IFG
Sbjct: 135 KFIANTIFHSLVAGVLCGLGTWYLLPYRLNLLYGNIGGTVMIFIFG-------------- 180
Query: 187 WEWATIC---YALPVALNTE-AILHSNNTRDLE----------------SDRQVGIVTV- 225
W TIC Y+L V TE A H+ +T ++ +DR IVTV
Sbjct: 181 --WLTICIGEYSLIVNSATETATFHAQDTYEITALLRPAYIFAFIAVDLADR--FIVTVP 236
Query: 226 AILLGQSYSHVYYAFLLFI-------PYIVFVVWGMNHSYYYLL 262
A+ L HV + FL F+ P V+WGM + ++L
Sbjct: 237 ALQLANQVLHVVFLFLPFLWALGILPPLDALVLWGMEQTLEFVL 280
>sp|Q15ZT9|UBIA_PSEA6 4-hydroxybenzoate octaprenyltransferase OS=Pseudoalteromonas
atlantica (strain T6c / ATCC BAA-1087) GN=ubiA PE=3 SV=2
Length = 285
Score = 35.8 bits (81), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 59/230 (25%), Positives = 96/230 (41%), Gaps = 37/230 (16%)
Query: 8 KNIWFTMLQEK-LSSYLLALRPWSLSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLT 66
+ W M +K + SYLL L PTL +A +G W I + +
Sbjct: 7 QGFWLLMRADKPVGSYLL----------LWPTLWALMIA-----AQGLPPWHITGIFMAG 51
Query: 67 VISVHCAGNVVNTYYDYVLGIDTSRRSDDRTLVDHILSESELVSLGVMLYLVSSAGFILL 126
V + AG V+N Y D + R + R LV +++E + +LG+ LV A ++L
Sbjct: 52 VFVMRSAGCVINDYADRKVDGKVDR-TKARPLVSGVVTEKQ--ALGLFATLVGVAFLLVL 108
Query: 127 SYISPAKMEHLAAVFFCGLSSSFLYSGCLGLKYTALGDVLILMIFGPITVLFAFMSQTGR 186
+ + L A+ L+S + + +YT V++ FG + AFM+ T
Sbjct: 109 ALNWQTIVLSLGAL---ALASVYPFMK----RYTHFPQVVLGAAFG-WAIPMAFMAVTEA 160
Query: 187 -----WEWATICYALPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQ 231
W I VA +T+ + N D Q+G+ + A+L GQ
Sbjct: 161 VPAIAWWLFAINVLWTVAYDTQYAMVDRN-----DDLQIGVKSTAVLFGQ 205
>sp|B3H1F9|UBIA_ACTP7 4-hydroxybenzoate octaprenyltransferase OS=Actinobacillus
pleuropneumoniae serotype 7 (strain AP76) GN=ubiA PE=3
SV=1
Length = 293
Score = 35.4 bits (80), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 98/207 (47%), Gaps = 22/207 (10%)
Query: 59 ILFVTLLTVISVHCAGNVVNTYYDYVLGIDTS-RRSDDRTLVDHILSESELVSLGVMLYL 117
+L + +L VI + AG V+N Y D ID +R+ R L ++ +E L V+L
Sbjct: 52 VLVIFVLGVIVMRAAGCVINDYADR--HIDGEVKRTSQRPLATGRVTTTEAKILFVLLLC 109
Query: 118 VSSAGFILLSYISPAKMEHLAAVFFCGLSSSFLYSGCLGLKYTALGDVLILMIFG-PITV 176
++ +LL+ + + F ++ + +Y ++T L V++ M FG I +
Sbjct: 110 IAFVLDLLLN-------RYTFLLSFVAVALAIIYP--FMKRFTHLPQVVLGMAFGWAIPM 160
Query: 177 LFAFMSQTGRWEWATICYA---LPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSY 233
+ +S++ E + +A VA +T+ + D + D ++G+ + AIL Q Y
Sbjct: 161 AYGAVSESLPLECWLLFFANIFWTVAYDTQYAM-----VDRDDDLRIGVKSTAILFAQ-Y 214
Query: 234 SHVYYAFLLFIPYIVFVVWGMNHSYYY 260
+ A L FI ++ V++G Y++
Sbjct: 215 DNKIIALLQFITLVLLVIFGWISQYHW 241
>sp|A3N0I2|UBIA_ACTP2 4-hydroxybenzoate octaprenyltransferase OS=Actinobacillus
pleuropneumoniae serotype 5b (strain L20) GN=ubiA PE=3
SV=1
Length = 293
Score = 35.4 bits (80), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 98/207 (47%), Gaps = 22/207 (10%)
Query: 59 ILFVTLLTVISVHCAGNVVNTYYDYVLGIDTS-RRSDDRTLVDHILSESELVSLGVMLYL 117
+L + +L VI + AG V+N Y D ID +R+ R L ++ +E L V+L
Sbjct: 52 VLVIFVLGVIVMRAAGCVINDYADR--HIDGEVKRTSQRPLATGRVTTTEAKILFVLLLC 109
Query: 118 VSSAGFILLSYISPAKMEHLAAVFFCGLSSSFLYSGCLGLKYTALGDVLILMIFG-PITV 176
++ +LL+ + + F ++ + +Y ++T L V++ M FG I +
Sbjct: 110 IAFVLDLLLN-------RYTFLLSFVAVALAIIYP--FMKRFTHLPQVVLGMAFGWAIPM 160
Query: 177 LFAFMSQTGRWEWATICYA---LPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSY 233
+ +S++ E + +A VA +T+ + D + D ++G+ + AIL Q Y
Sbjct: 161 AYGAVSESLPLECWLLFFANIFWTVAYDTQYAM-----VDRDDDLRIGVKSTAILFAQ-Y 214
Query: 234 SHVYYAFLLFIPYIVFVVWGMNHSYYY 260
+ A L FI ++ V++G Y++
Sbjct: 215 DNKIIALLQFITLVLLVIFGWISQYHW 241
>sp|Q494A7|UBIA_BLOPB 4-hydroxybenzoate octaprenyltransferase OS=Blochmannia
pennsylvanicus (strain BPEN) GN=ubiA PE=3 SV=1
Length = 290
Score = 35.4 bits (80), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 59/214 (27%), Positives = 92/214 (42%), Gaps = 50/214 (23%)
Query: 35 LIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHCAGNVVNTYYDYVLGIDTS-RRS 93
L PTL G L+ KG ++L V + + + AG ++N Y DY ID +R+
Sbjct: 30 LWPTLWGLWLS-----HKGIPDKVVLIVFVAGALCMRSAGCIINDYVDY--DIDGHVQRT 82
Query: 94 DDRTLVDHILSESE-LVSLGVMLY----LVSSAGFI---------LLSYISPAKMEHLAA 139
R L ++ + E LV+L ++L+ LV S FI +LS+I P +
Sbjct: 83 KTRPLPSGMIRKKEALVALSILLFIAFILVLSLNFITIFLSVVALILSWIYPYLKRY--- 139
Query: 140 VFFCGLSSSFLYSGCLGLKYTALGDVLILMIFGPI--TVLFAFMSQTGRWEWATICYALP 197
++F + L+S + + +TA+ + PI T F+ T W TI Y
Sbjct: 140 IYFPQVMLGLLFSWPILMAFTAINN--------PINSTAWLLFLMNT---VW-TIVYDTQ 187
Query: 198 VALNTEAILHSNNTRDLESDRQVGIVTVAILLGQ 231
A+ D E D VGI + A+L G
Sbjct: 188 YAM-----------IDREDDIYVGIKSSAVLFGD 210
>sp|B0BPA2|UBIA_ACTPJ 4-hydroxybenzoate octaprenyltransferase OS=Actinobacillus
pleuropneumoniae serotype 3 (strain JL03) GN=ubiA PE=3
SV=1
Length = 293
Score = 35.4 bits (80), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 98/207 (47%), Gaps = 22/207 (10%)
Query: 59 ILFVTLLTVISVHCAGNVVNTYYDYVLGIDTS-RRSDDRTLVDHILSESELVSLGVMLYL 117
+L + +L VI + AG V+N Y D ID +R+ R L ++ +E L V+L
Sbjct: 52 VLVIFVLGVIVMRAAGCVINDYADR--HIDGEVKRTSQRPLATGRVTTTEAKILFVLLLC 109
Query: 118 VSSAGFILLSYISPAKMEHLAAVFFCGLSSSFLYSGCLGLKYTALGDVLILMIFG-PITV 176
++ +LL+ + + F ++ + +Y ++T L V++ M FG I +
Sbjct: 110 IAFVLDLLLN-------RYTFLLSFVAVALAIIYP--FMKRFTHLPQVVLGMAFGWAIPM 160
Query: 177 LFAFMSQTGRWEWATICYA---LPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSY 233
+ +S++ E + +A VA +T+ + D + D ++G+ + AIL Q Y
Sbjct: 161 AYGAVSESLPLECWLLFFANIFWTVAYDTQYAM-----VDRDDDLRIGVKSTAILFAQ-Y 214
Query: 234 SHVYYAFLLFIPYIVFVVWGMNHSYYY 260
+ A L FI ++ V++G Y++
Sbjct: 215 DNKIIALLQFITLVLLVIFGWISQYHW 241
>sp|Q2NV87|CYOE_SODGM Protoheme IX farnesyltransferase OS=Sodalis glossinidius (strain
morsitans) GN=cyoE PE=3 SV=2
Length = 297
Score = 35.0 bits (79), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 51/109 (46%), Gaps = 11/109 (10%)
Query: 19 LSSYLLALRPWSLSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHCAGNVVN 78
+ YL +P + +LI + G LA KGQ + + TLL V V +G V N
Sbjct: 3 IKQYLQVTKPGIIFGNLISVIGGFLLA-----AKGQIDYALFLATLLGVSLVVASGCVFN 57
Query: 79 TYYDYVLGIDTS-RRSDDRTLVDHILSESELVSLGVMLYLVSSAGFILL 126
Y D ID R+ +R LV ++S VSL V ++ AGF LL
Sbjct: 58 NYIDR--DIDRKMERTKNRVLVKGLISPK--VSL-VYATVLGIAGFALL 101
>sp|C5A1J7|DGGGP_THEGJ Digeranylgeranylglyceryl phosphate synthase OS=Thermococcus
gammatolerans (strain DSM 15229 / JCM 11827 / EJ3)
GN=TGAM_1764 PE=3 SV=1
Length = 276
Score = 34.7 bits (78), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 59/260 (22%), Positives = 118/260 (45%), Gaps = 42/260 (16%)
Query: 18 KLSSYLLALRPWSLSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHCAG-NV 76
+L +++ RP + + + + +LG +A+ + +G+ + + + V+S+ CAG N
Sbjct: 2 ELRAFVEITRPHNCALAGLVGVLGSMVALG-SVPEGK-----ILILVFLVVSLGCAGGNT 55
Query: 77 VNTYYDYVLG-IDTSRRSDDRTLVDHILS---ESELVSLGVMLYLVSSA---GFILLSYI 129
+N Y+DY + I+ R R +D + L ++G+ L L+ S F LL+YI
Sbjct: 56 INDYFDYEIDRINRPERPLPRGAMDRRTALWYSLFLFAVGLALALLISLKAFAFALLAYI 115
Query: 130 SPAKMEHLAAVFFCGLSSSFLYSGCLGLKYTALGDVLILMIFGPITVLFAFMS--QTGRW 187
+ FLY+ L +G++ + + G +T L+ ++ + G
Sbjct: 116 -----------------TMFLYAWKLK-PLPFIGNIAVAALTG-VTPLYGAIAVGKIGLA 156
Query: 188 EWATICYALPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQ---SYSHVYYAFLLFI 244
+C A V + E + + D+E D + G T+ I+LG+ +Y ++ I
Sbjct: 157 GTLAVC-AFLVNVAREIV---KDIEDVEGDLKKGAKTLPIILGRRKAAYVAAFFGVATVI 212
Query: 245 PYIVFVVWGMNHSYYYLLPL 264
+ V G+ YY ++P+
Sbjct: 213 ASFLPVKAGVGVGYYAMVPV 232
>sp|B1KKU2|UBIA_SHEWM 4-hydroxybenzoate octaprenyltransferase OS=Shewanella woodyi
(strain ATCC 51908 / MS32) GN=ubiA PE=3 SV=1
Length = 286
Score = 34.3 bits (77), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 50/225 (22%), Positives = 102/225 (45%), Gaps = 25/225 (11%)
Query: 59 ILFVTLLTVISVHCAGNVVNTYYDYVLGIDTSRRSDDRTLVDHILSESELVSLGVMLYLV 118
+L + ++ V+ + G ++N Y D L R+ R L +S E ++L V++ L+
Sbjct: 45 VLVIFIIGVVVMRACGCIINDYADRKLD-SHVERTKSRPLASGEVSVKEALTLFVVMGLI 103
Query: 119 SSAGFILLSYISPAKMEHLAAVFFCGLSSSFLYSGCLGLKYTALGDVLILMIFGPITVLF 178
+ F L+ ++P ++ + F G+ + +Y ++T + + + +++ ++
Sbjct: 104 A---FGLVLMLNPLVVQ----LSFVGIILTIIYP--FTKRFTNMPQMFLGVVWS-WSIPM 153
Query: 179 AFMSQTGR-----WEWATICYALPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSY 233
A+ +QTG W + VA +T +++ RD D +VGI + AIL G+ Y
Sbjct: 154 AYAAQTGTVPAEAWWLFAANWCWTVAYDT---MYAMVDRD--DDLKVGIKSTAILFGK-Y 207
Query: 234 SHVYYAFLLFIPYIVFVV--WGMNHSYYYLLPLVTLKSAFSIEKQ 276
A F++ W + Y L ++T FS+ +Q
Sbjct: 208 DRQVIALFQLAALACFIIAGWAADRGLVYALGIITF-VGFSLYQQ 251
>sp|A6T5H1|CYOE_KLEP7 Protoheme IX farnesyltransferase OS=Klebsiella pneumoniae subsp.
pneumoniae (strain ATCC 700721 / MGH 78578) GN=cyoE PE=3
SV=1
Length = 295
Score = 33.9 bits (76), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 52/109 (47%), Gaps = 13/109 (11%)
Query: 20 SSYLLALRPWSLSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHCAGNVVNT 79
YL +P + +LI + G LA K I+ F W +L V+L+ +G V N
Sbjct: 3 KQYLQVTKPGIIFGNLISVIGGFLLASKGHIDYPLFVWTLLGVSLVV-----ASGCVFNN 57
Query: 80 YYDYVLGIDTS-RRSDDRTLVDHILS-ESELVSLGVMLYLVSSAGFILL 126
Y D ID R+ +R LV ++S E+ L V L+ AGF+LL
Sbjct: 58 YIDR--DIDRKMERTKNRVLVKGLISPEASL----VYATLLGIAGFMLL 100
>sp|Q07XN2|UBIA_SHEFN 4-hydroxybenzoate octaprenyltransferase OS=Shewanella frigidimarina
(strain NCIMB 400) GN=ubiA PE=3 SV=1
Length = 286
Score = 33.9 bits (76), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 61/252 (24%), Positives = 103/252 (40%), Gaps = 61/252 (24%)
Query: 15 LQEKLSSYLLALR---PWSLSASLIPTLLGCALAVK-LPIEKGQFSWIILFVTLLTVISV 70
LQ+KL +Y +R P L P L+ LA + LP K +L + ++ V+ +
Sbjct: 3 LQDKLRAYARLMRIDRPIGTLLLLWPCLMALVLAAQGLPDIK------VLLIFIVGVVIM 56
Query: 71 HCAGNVVNTYYDYVLGIDTSRRSDDRTLVDHILSESELVSLGVMLYLVSSAGFILLSYIS 130
G ++N + D L R S R LV +S E ++L +L L A F L+ +++
Sbjct: 57 RANGCIINDFADRKLDAHVERTSM-RPLVSGEVSVKEALTLFTLLGL---AAFCLVLWLN 112
Query: 131 P-------------------AKMEHLAAVFFCGLSSSFLYSGCLGLKYTA-LGDVLILMI 170
P ++ ++ +F ++S + + Y A LG+V
Sbjct: 113 PLVVQLSVVGIILTVMYPFMKRVTNMPQMFL-----GIVWSWSIPMAYAAQLGEV----- 162
Query: 171 FGPITVLFAFMSQTGRWEWATICYALPVALNTEAILHSNNTRDLESDRQVGIVTVAILLG 230
P+ + FM+ W W T+ Y A+ D + D +VGI + AIL G
Sbjct: 163 --PVEAWWLFMAN---WCW-TVAYDTMYAIV-----------DRDDDLKVGIKSTAILFG 205
Query: 231 QSYSHVYYAFLL 242
+ + F L
Sbjct: 206 RFDRQIIGVFQL 217
>sp|Q02654|COX3_PODAN Cytochrome c oxidase subunit 3 OS=Podospora anserina (strain S /
ATCC MYA-4624 / DSM 980 / FGSC 10383) GN=COIII PE=3 SV=1
Length = 269
Score = 33.5 bits (75), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 54/104 (51%), Gaps = 15/104 (14%)
Query: 22 YLLALRPWSLSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHCAGNVVNTYY 81
+L++ PW L S+ +LL A + L + S+ + F++L+ VIS ++ +
Sbjct: 15 HLVSPSPWPLYTSV--SLLNLATSAALSMHNFNNSYYLFFISLILVIS-----SMAFWFR 67
Query: 82 DYVLGIDTSRRSDDRTLVDHILSESELVSLGVMLYLVSSAGFIL 125
D + S+ L DH L+ + ++LGV+L++VS A F L
Sbjct: 68 DII--------SEATLLGDHTLAVQKGLNLGVILFIVSEALFFL 103
>sp|Q2SNV5|UBIA_HAHCH 4-hydroxybenzoate octaprenyltransferase OS=Hahella chejuensis
(strain KCTC 2396) GN=ubiA PE=3 SV=1
Length = 300
Score = 33.5 bits (75), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 68/283 (24%), Positives = 113/283 (39%), Gaps = 57/283 (20%)
Query: 10 IWFTMLQEKLSSYLLALRPWSLSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVIS 69
I T L + +YLL L PTL LA +G S LF+ + V+
Sbjct: 23 IGLTRLNRPIGTYLL----------LWPTLWALWLA-----SEGAPSLKNLFIFVFGVLL 67
Query: 70 VHCAGNVVNTYYDYVLGIDTSRRSDDRTLVDHILSESELVSLGVMLYLVSSAGFILLSYI 129
+ AG V+N Y D + + R+ R + ++E E ++L +L VS FIL
Sbjct: 68 MRSAGCVINDYADRRIDMHVE-RTKGRPFAQNQVTEKEALTLFGILVGVS---FIL---- 119
Query: 130 SPAKMEHLAAVFFCGLSSSFLYSGCLGL--------KYTALGDVLILMIF--GPITVLFA 179
V F + +L +G L L ++T L V++ F G A
Sbjct: 120 ----------VLFTNALTIYLSAGALALASTYPFMKRHTYLPQVVLGAAFAWGIPMAFAA 169
Query: 180 FMSQTGRWEW----ATICYALPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSH 235
+ + W AT+ + VA +T + D E D ++G+ + AIL G++
Sbjct: 170 ELDAVPQQAWLLYTATVVWT--VAYDTMYAMA-----DREDDLKIGVKSTAILFGEADRA 222
Query: 236 VYYAFLLFIPYIVFVVWGMNHS--YYYLLPLVTLKSAFSIEKQ 276
+ ++F+V G H YY + L+ + F ++
Sbjct: 223 AVAGLQVLTLGVLFMV-GAQHELGVYYQVSLIIVAVLFVYQQH 264
>sp|Q3INH7|DGGGP_NATPD Digeranylgeranylglyceryl phosphate synthase OS=Natronomonas
pharaonis (strain DSM 2160 / ATCC 35678) GN=NP_4470A
PE=3 SV=1
Length = 277
Score = 33.5 bits (75), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 52/219 (23%), Positives = 97/219 (44%), Gaps = 21/219 (9%)
Query: 17 EKLSSYLLALRPWSLSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHCAGNV 76
E++ + LRP + A+ T +G +A L + + F + TV++ AGN
Sbjct: 2 ERVRGLVELLRPGNAVAAGGLTFIGAFVAGGLSSPQS-----MAFAVVATVLATG-AGNA 55
Query: 77 VNTYYDYVLGIDTSRRSDDRTLVDHILSESELVSLGVMLYLVSSAGFILLSYISPAKMEH 136
+N Y+D ID DR + +S + V L+ V+ ++L+ + P
Sbjct: 56 INDYFDR--DIDAINEP-DRPIPRGAVSPRGALVYSVALFAVA----VVLTLLLPWLAIA 108
Query: 137 LAAVFFCGLSS-SFLYSGCLGLKYTALGDVLILMIFGPITVLFAFMSQTGRWEWATICYA 195
+AA+ L + + ++ G G +G+ L+ + G T L+ + G + +A
Sbjct: 109 IAAINLVALVAYTEVFKGLPG-----VGNALVAYLTGS-TFLYGGAAVGGDLAAVVVLFA 162
Query: 196 LPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYS 234
L A T A + D++ DR G+ T+ I++G+ S
Sbjct: 163 L-AACATMAREIVKDVEDIDGDRAEGLRTLPIVIGERRS 200
>sp|A4W799|CYOE_ENT38 Protoheme IX farnesyltransferase OS=Enterobacter sp. (strain 638)
GN=cyoE PE=3 SV=1
Length = 295
Score = 33.5 bits (75), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 52/108 (48%), Gaps = 11/108 (10%)
Query: 20 SSYLLALRPWSLSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHCAGNVVNT 79
YL +P + +LI + G LA KG + + TL+ V V +G V N
Sbjct: 3 KQYLQVTKPGIIFGNLISVIGGFLLA-----SKGSIDYTLFASTLVGVSLVVASGCVFNN 57
Query: 80 YYDYVLGIDTS-RRSDDRTLVDHILSESELVSLGVMLYLVSSAGFILL 126
Y D + ID R+ +R LV ++S + VSL V L+ AGF+LL
Sbjct: 58 YID--MDIDRKMERTKNRVLVKGLISPT--VSL-VYATLLGIAGFMLL 100
>sp|A6W3L5|UBIA_MARMS 4-hydroxybenzoate octaprenyltransferase OS=Marinomonas sp. (strain
MWYL1) GN=ubiA PE=3 SV=1
Length = 284
Score = 33.5 bits (75), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 57/213 (26%), Positives = 85/213 (39%), Gaps = 51/213 (23%)
Query: 37 PTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHCAGNVVNTYYDYVLG--IDTSRRSD 94
PTL LA G W ++ + +L V S+ AG V+N Y D + +D R+
Sbjct: 25 PTLWALWLAAD-----GMPQWHLVIIFILGVFSMRSAGCVINDYADRKVDGFVD---RTK 76
Query: 95 DRTLVDHILSESE-------LVSLGVMLYLVSSAGFILLSYISPA---------KMEHLA 138
+R L +SE E L L +L L + ILLS++ + HL
Sbjct: 77 NRPLPSGRVSEKEALMLFCALSILSFILVLFTDLRTILLSFVGLGLAALYPFMKRYTHLP 136
Query: 139 AVFFCGLSSSFLYSGCLGLKYTALGDVLILMIFGPITVLFAFMSQTGRWEWATICYALPV 198
+F GL+ +S + + Y+A G G +T +M W TI Y
Sbjct: 137 QLFL-GLA----FSWAIPMAYSAQG--------GDLTDPKLWMLFVANCFW-TIAYDTYY 182
Query: 199 ALNTEAILHSNNTRDLESDRQVGIVTVAILLGQ 231
A+ D D ++GI + AIL GQ
Sbjct: 183 AMT-----------DRPDDLKIGIKSTAILFGQ 204
>sp|Q8CXI8|COXX_OCEIH Protoheme IX farnesyltransferase OS=Oceanobacillus iheyensis
(strain DSM 14371 / JCM 11309 / KCTC 3954 / HTE831)
GN=ctaB PE=3 SV=1
Length = 314
Score = 33.5 bits (75), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 49/101 (48%), Gaps = 6/101 (5%)
Query: 31 LSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHCAGNVVNTYYDYVLGIDTS 90
++++LI T+ G LA+ +W +T++ V G +VN +YD + ID
Sbjct: 39 VNSNLITTIAGFLLAISFTSSSFMSNWGTFLLTIIGTALVIAGGCIVNNWYD--VDIDPK 96
Query: 91 -RRSDDRTLVDHILSESELVSLGVMLYLVSSAGFILLSYIS 130
R+ +R V S +++ G+ L ++ G +LL + S
Sbjct: 97 MSRTKNRPTVTGFFSLKSVLTFGL---LTTAVGLLLLMFTS 134
>sp|Q0A5V9|UBIA_ALHEH 4-hydroxybenzoate octaprenyltransferase OS=Alkalilimnicola
ehrlichei (strain MLHE-1) GN=ubiA PE=3 SV=1
Length = 293
Score = 33.5 bits (75), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 80/165 (48%), Gaps = 15/165 (9%)
Query: 70 VHCAGNVVNTYYDYVLGIDTSRRSDDRTLVDHILSESELVSLGVMLYLVSSAGFILLSYI 129
+ AG V+N Y D +R+ R + + +SE E ++L V+L LV+ +L++ +
Sbjct: 61 MRAAGCVINDYADRDFD-GHVKRTTHRPMANGRVSEREALTLFVVLCLVAFGLVLLMNPL 119
Query: 130 SPAKMEHLAAVFFCGLSSSFLYSGCLGLKYTALGDVLILMIFGPITVLFAFMSQTGRWEW 189
+ A L AV L++++ + +YT V + FG + AF +QTG
Sbjct: 120 TIAL--SLVAV---ALAATYPFMK----RYTHFPQVHLGAAFG-WAIPMAFAAQTG--AV 167
Query: 190 ATICYALPVALNTEAILHSNNTR--DLESDRQVGIVTVAILLGQS 232
A + + L ++ A ++ D + D ++G+ + A+L GQ+
Sbjct: 168 APVAWLLFLSAVLWATIYDTQYAMVDRDDDLKIGVKSTAVLFGQA 212
>sp|Q3SLJ4|UBIA_THIDA 4-hydroxybenzoate octaprenyltransferase OS=Thiobacillus
denitrificans (strain ATCC 25259) GN=ubiA PE=3 SV=1
Length = 293
Score = 33.1 bits (74), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 43/96 (44%), Gaps = 9/96 (9%)
Query: 15 LQEKLSSYLLALR---PWSLSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVH 71
L E+LS Y R P + L PTL LA G W+IL++ ++ V+ +
Sbjct: 3 LTERLSLYEKLARLDKPIGILLLLWPTLWAQWLA-----SNGDPDWLILWIFVMGVVLMR 57
Query: 72 CAGNVVNTYYDYVLGIDTSRRSDDRTLVDHILSESE 107
AG VVN Y D + R+ DR + +S E
Sbjct: 58 SAGCVVNDYADRDFDPHVA-RTRDRPIAAGKVSPKE 92
>sp|Q7MQ87|UBIA_VIBVY 4-hydroxybenzoate octaprenyltransferase OS=Vibrio vulnificus
(strain YJ016) GN=ubiA PE=3 SV=1
Length = 284
Score = 32.7 bits (73), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 82/181 (45%), Gaps = 13/181 (7%)
Query: 52 KGQFSWIILFVTLLTVISVHCAGNVVNTYYDYVLGIDTS-RRSDDRTLVDHILSESELVS 110
+G W +L V +L V+ + AG V+N + D +D +R+ R L ++ E V
Sbjct: 37 EGTPDWHVLLVFVLGVVLMRSAGCVINDFADR--KVDGHVKRTQQRPLPSGRVTAKEAV- 93
Query: 111 LGVMLYLVSSAGFILLSYISPAKMEHLAAVFFCGLSSSFLYSGCLGLKYTALGDVLILMI 170
++ L+ + F+L+ ++P ++ + F G+ +F+Y +YT L + + +
Sbjct: 94 --ILFLLLGISSFLLVLTMNPLTIQ----LSFAGIVLAFIYP--FMKRYTHLPQLFLGLA 145
Query: 171 FGPITVLFAFMSQTGRWEWATICYALPVALNTEAILHSNNTRDLESDRQVGIVTVAILLG 230
F + A+ +Q W AL T A D + D Q+G+ + AIL G
Sbjct: 146 FS-WAIPMAWAAQANELPWVVWFVFAINALWTIAYDTQYAMVDRDDDIQIGVKSTAILFG 204
Query: 231 Q 231
+
Sbjct: 205 R 205
>sp|A8AK26|CYOE_CITK8 Protoheme IX farnesyltransferase OS=Citrobacter koseri (strain ATCC
BAA-895 / CDC 4225-83 / SGSC4696) GN=cyoE PE=3 SV=1
Length = 296
Score = 32.7 bits (73), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 52/108 (48%), Gaps = 11/108 (10%)
Query: 20 SSYLLALRPWSLSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHCAGNVVNT 79
YL +P + +LI + G LA KG ++ + TL+ V V +G V N
Sbjct: 4 KQYLQVTKPGIIFGNLISVIGGFLLA-----SKGSINYPLFIYTLVGVSLVVASGCVFNN 58
Query: 80 YYDYVLGIDTS-RRSDDRTLVDHILSESELVSLGVMLYLVSSAGFILL 126
Y D ID R+ +R LV ++S + VSL V L+ AGF+LL
Sbjct: 59 YIDR--DIDRKMERTKNRVLVKGLISPA--VSL-VYATLLGIAGFMLL 101
>sp|Q1R3P6|UBIA_ECOUT 4-hydroxybenzoate octaprenyltransferase OS=Escherichia coli (strain
UTI89 / UPEC) GN=ubiA PE=3 SV=1
Length = 290
Score = 32.3 bits (72), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 79/176 (44%), Gaps = 17/176 (9%)
Query: 59 ILFVTLLTVISVHCAGNVVNTYYDYVLGIDTSRRSDDRTLVDHILSESELVSLGVMLYLV 118
IL V + V + AG VVN Y D +R+ +R L ++E E +L V+L L+
Sbjct: 48 ILAVFVAGVWLMRAAGCVVNDYADRKFD-GHVKRTANRPLPSGAVTEKEARALFVVLVLI 106
Query: 119 SSAGFILLSYISPAKMEHLAAVFFCGLSSSFLYSGCLGLKYTALGDVLILMIFG-PITVL 177
S F+L+ ++ + A F+ +YT L V++ FG I +
Sbjct: 107 S---FLLVLTLNTMTILLSIAALALAWVYPFMK------RYTHLPQVVLGAAFGWSIPMA 157
Query: 178 FAFMSQTGRWEWATICYALPVALNTEAILHSNNTR--DLESDRQVGIVTVAILLGQ 231
FA +S++ C+ + +A A+ + D + D ++GI + AIL GQ
Sbjct: 158 FAAVSESV----PLSCWLMFLANILWAVAYDTQYAMVDRDDDVKIGIKSTAILFGQ 209
>sp|A1AIL7|UBIA_ECOK1 4-hydroxybenzoate octaprenyltransferase OS=Escherichia coli O1:K1 /
APEC GN=ubiA PE=3 SV=1
Length = 290
Score = 32.3 bits (72), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 79/176 (44%), Gaps = 17/176 (9%)
Query: 59 ILFVTLLTVISVHCAGNVVNTYYDYVLGIDTSRRSDDRTLVDHILSESELVSLGVMLYLV 118
IL V + V + AG VVN Y D +R+ +R L ++E E +L V+L L+
Sbjct: 48 ILAVFVAGVWLMRAAGCVVNDYADRKFD-GHVKRTANRPLPSGAVTEKEARALFVVLVLI 106
Query: 119 SSAGFILLSYISPAKMEHLAAVFFCGLSSSFLYSGCLGLKYTALGDVLILMIFG-PITVL 177
S F+L+ ++ + A F+ +YT L V++ FG I +
Sbjct: 107 S---FLLVLTLNTMTILLSIAALALAWVYPFMK------RYTHLPQVVLGAAFGWSIPMA 157
Query: 178 FAFMSQTGRWEWATICYALPVALNTEAILHSNNTR--DLESDRQVGIVTVAILLGQ 231
FA +S++ C+ + +A A+ + D + D ++GI + AIL GQ
Sbjct: 158 FAAVSESV----PLSCWLMFLANILWAVAYDTQYAMVDRDDDVKIGIKSTAILFGQ 209
>sp|B7MJ30|UBIA_ECO45 4-hydroxybenzoate octaprenyltransferase OS=Escherichia coli O45:K1
(strain S88 / ExPEC) GN=ubiA PE=3 SV=1
Length = 290
Score = 32.3 bits (72), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 79/176 (44%), Gaps = 17/176 (9%)
Query: 59 ILFVTLLTVISVHCAGNVVNTYYDYVLGIDTSRRSDDRTLVDHILSESELVSLGVMLYLV 118
IL V + V + AG VVN Y D +R+ +R L ++E E +L V+L L+
Sbjct: 48 ILAVFVAGVWLMRAAGCVVNDYADRKFD-GHVKRTANRPLPSGAVTEKEARALFVVLVLI 106
Query: 119 SSAGFILLSYISPAKMEHLAAVFFCGLSSSFLYSGCLGLKYTALGDVLILMIFG-PITVL 177
S F+L+ ++ + A F+ +YT L V++ FG I +
Sbjct: 107 S---FLLVLTLNTMTILLSIAALALAWVYPFMK------RYTHLPQVVLGAAFGWSIPMA 157
Query: 178 FAFMSQTGRWEWATICYALPVALNTEAILHSNNTR--DLESDRQVGIVTVAILLGQ 231
FA +S++ C+ + +A A+ + D + D ++GI + AIL GQ
Sbjct: 158 FAAVSESV----PLSCWLMFLANILWAVAYDTQYAMVDRDDDVKIGIKSTAILFGQ 209
>sp|A0LTZ0|COXX_ACIC1 Protoheme IX farnesyltransferase OS=Acidothermus cellulolyticus
(strain ATCC 43068 / 11B) GN=ctaB PE=3 SV=1
Length = 307
Score = 32.3 bits (72), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 78/182 (42%), Gaps = 39/182 (21%)
Query: 14 MLQEKLSSYLLALRPWSLSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHCA 73
+L + + +LA R W S ++ VT+L +
Sbjct: 37 LLVTTVPTMMLAARGWPSSR-------------------------LVVVTVLAGALAAGS 71
Query: 74 GNVVNTYYDYVLGID-TSRRSDDRTLVDHILSESELVSLGVMLYLVSS--AGFILLSYIS 130
N +N + D ID RR+ R LV ++ +E ++ GV L +V++ GF L++++S
Sbjct: 72 ANTLNCFIDR--DIDQVMRRTARRPLVRSVIRPAEALAFGVALGVVATLLMGF-LVNWLS 128
Query: 131 PAKMEHLAAVFFCGLSSSFLYSGCLGLKYTALGDVLILMIFGPITVLFAFMSQTGRWEWA 190
A + A VF+ G+ + +GLK +++I G VL + + TGR W
Sbjct: 129 -AILADAAIVFYVGVYT-------IGLKRRTPSNIVIGGAAGCFPVLIGWSAVTGRVGWP 180
Query: 191 TI 192
+
Sbjct: 181 AV 182
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.327 0.140 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 105,539,824
Number of Sequences: 539616
Number of extensions: 4105186
Number of successful extensions: 13159
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 206
Number of HSP's that attempted gapping in prelim test: 13043
Number of HSP's gapped (non-prelim): 239
length of query: 308
length of database: 191,569,459
effective HSP length: 117
effective length of query: 191
effective length of database: 128,434,387
effective search space: 24530967917
effective search space used: 24530967917
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 61 (28.1 bits)