Query psy14930
Match_columns 308
No_of_seqs 187 out of 1772
Neff 8.3
Searched_HMMs 46136
Date Fri Aug 16 16:07:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14930.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14930hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK07419 1,4-dihydroxy-2-napht 100.0 3.6E-55 7.8E-60 399.0 33.7 286 14-308 7-299 (304)
2 PRK13387 1,4-dihydroxy-2-napht 100.0 1.2E-54 2.7E-59 398.9 33.9 285 17-307 1-313 (317)
3 TIGR00751 menA 1,4-dihydroxy-2 100.0 4.2E-54 9.2E-59 389.4 30.4 274 27-304 1-284 (284)
4 TIGR02235 menA_cyano-plnt 1,4- 100.0 1.3E-53 2.8E-58 386.4 32.6 276 22-307 2-285 (285)
5 COG1575 MenA 1,4-dihydroxy-2-n 100.0 2.5E-53 5.5E-58 378.3 32.2 284 18-307 7-299 (303)
6 PLN02922 prenyltransferase 100.0 1.1E-52 2.3E-57 384.8 33.5 285 14-308 10-314 (315)
7 PRK05951 ubiA prenyltransferas 100.0 5.6E-52 1.2E-56 379.0 33.9 284 17-308 2-290 (296)
8 PRK06080 1,4-dihydroxy-2-napht 100.0 2E-50 4.3E-55 369.3 34.0 285 17-308 1-292 (293)
9 KOG4581|consensus 100.0 9E-46 2E-50 312.6 7.9 292 15-308 57-348 (359)
10 TIGR02056 ChlG chlorophyll syn 100.0 2E-41 4.4E-46 310.7 29.7 275 15-301 12-299 (306)
11 TIGR01476 chlor_syn_BchG bacte 100.0 1.6E-41 3.4E-46 309.0 27.2 269 20-301 1-277 (283)
12 PRK13105 ubiA prenyltransferas 100.0 4.4E-40 9.5E-45 296.4 29.1 265 19-305 1-277 (282)
13 PRK07566 bacteriochlorophyll/c 100.0 5.6E-38 1.2E-42 288.9 29.4 274 15-306 23-308 (314)
14 PLN00012 chlorophyll synthetas 100.0 1.2E-37 2.7E-42 290.7 30.2 274 17-302 83-369 (375)
15 PRK12869 ubiA protoheme IX far 100.0 1.7E-34 3.6E-39 261.9 32.3 275 18-308 1-279 (279)
16 PRK12887 ubiA tocopherol phyty 100.0 1.2E-34 2.5E-39 265.6 28.4 229 12-253 6-246 (308)
17 PRK12847 ubiA 4-hydroxybenzoat 100.0 3.5E-34 7.7E-39 260.8 30.7 275 16-308 4-284 (285)
18 PRK12392 bacteriochlorophyll c 100.0 5E-34 1.1E-38 263.0 29.0 260 14-280 7-274 (331)
19 PRK04375 protoheme IX farnesyl 100.0 2.6E-33 5.7E-38 256.1 30.4 218 15-246 6-224 (296)
20 TIGR01475 ubiA_other putative 100.0 2.5E-33 5.3E-38 255.0 28.7 271 18-307 1-278 (282)
21 PRK12871 ubiA prenyltransferas 100.0 5.6E-33 1.2E-37 253.1 30.7 280 16-306 2-292 (297)
22 PRK12878 ubiA 4-hydroxybenzoat 100.0 5E-33 1.1E-37 255.5 30.2 278 15-307 26-310 (314)
23 PRK09573 (S)-2,3-di-O-geranylg 100.0 4.2E-33 9.1E-38 253.1 28.3 264 17-300 1-270 (279)
24 PRK12888 ubiA prenyltransferas 100.0 1.2E-32 2.7E-37 249.7 30.2 274 18-307 1-279 (284)
25 PRK12884 ubiA prenyltransferas 100.0 1.2E-32 2.6E-37 250.3 29.5 266 16-304 1-271 (279)
26 PRK12870 ubiA 4-hydroxybenzoat 100.0 1.2E-32 2.7E-37 250.7 28.4 275 15-307 5-286 (290)
27 TIGR01473 cyoE_ctaB protoheme 100.0 1.6E-32 3.5E-37 249.4 29.1 213 20-246 1-215 (280)
28 PRK12848 ubiA 4-hydroxybenzoat 100.0 3.6E-32 7.9E-37 247.1 29.2 272 16-307 2-280 (282)
29 PRK12883 ubiA prenyltransferas 100.0 5.8E-32 1.2E-36 245.4 29.8 264 17-300 1-268 (277)
30 PRK12886 ubiA prenyltransferas 100.0 8.4E-32 1.8E-36 245.2 30.7 272 17-307 6-282 (291)
31 PRK12882 ubiA prenyltransferas 100.0 9.2E-32 2E-36 244.0 28.6 215 17-249 2-217 (276)
32 PRK12874 ubiA prenyltransferas 100.0 2.4E-31 5.3E-36 242.0 30.7 274 16-307 5-286 (291)
33 TIGR01474 ubiA_proteo 4-hydrox 100.0 7E-31 1.5E-35 238.5 30.1 266 23-307 8-278 (281)
34 PRK12875 ubiA prenyltransferas 100.0 1.3E-30 2.9E-35 235.5 29.0 266 15-306 4-276 (282)
35 PRK13595 ubiA prenyltransferas 100.0 1.3E-30 2.9E-35 234.1 28.7 266 18-304 11-281 (292)
36 PRK13106 ubiA prenyltransferas 100.0 1.7E-30 3.6E-35 236.9 28.7 273 12-307 8-293 (300)
37 PRK13362 protoheme IX farnesyl 100.0 6.9E-30 1.5E-34 233.7 30.2 272 16-305 10-286 (306)
38 PRK12895 ubiA prenyltransferas 100.0 7.1E-30 1.5E-34 230.9 28.7 271 17-307 1-278 (286)
39 PRK12872 ubiA prenyltransferas 100.0 1.7E-29 3.7E-34 230.3 25.8 267 18-300 3-276 (285)
40 PLN02809 4-hydroxybenzoate non 100.0 1.6E-28 3.5E-33 223.0 28.4 272 17-307 4-284 (289)
41 PF01040 UbiA: UbiA prenyltran 100.0 1.3E-28 2.8E-33 220.4 23.8 190 32-236 2-193 (257)
42 COG0382 UbiA 4-hydroxybenzoate 100.0 5.2E-27 1.1E-31 214.2 30.3 269 19-307 13-286 (289)
43 PRK12876 ubiA prenyltransferas 100.0 1.3E-26 2.8E-31 209.8 29.4 276 17-307 2-294 (300)
44 PRK12873 ubiA prenyltransferas 100.0 6.4E-26 1.4E-30 205.4 26.8 278 15-307 3-290 (294)
45 PLN02878 homogentisate phytylt 99.9 8.4E-26 1.8E-30 200.7 22.2 187 58-253 23-220 (280)
46 PRK13591 ubiA prenyltransferas 99.9 1.8E-24 4E-29 195.3 23.7 174 54-253 58-243 (307)
47 PLN02776 prenyltransferase 99.9 1E-22 2.2E-27 187.1 29.1 258 26-305 2-266 (341)
48 COG0109 CyoE Polyprenyltransfe 99.9 1.1E-23 2.5E-28 187.8 18.3 251 15-279 14-269 (304)
49 PRK13592 ubiA prenyltransferas 99.9 1.9E-21 4.1E-26 174.3 25.6 230 56-304 44-292 (299)
50 PRK12324 phosphoribose diphosp 99.8 2.4E-16 5.3E-21 143.3 27.6 194 15-224 7-202 (295)
51 PRK08238 hypothetical protein; 99.7 6.5E-15 1.4E-19 142.6 27.5 192 12-222 184-377 (479)
52 KOG1381|consensus 99.7 6E-16 1.3E-20 134.7 10.4 216 9-239 54-274 (353)
53 KOG1380|consensus 99.4 2.6E-13 5.6E-18 121.0 4.3 212 17-245 92-308 (409)
54 PRK12884 ubiA prenyltransferas 95.2 1.1 2.4E-05 40.5 15.4 38 193-231 41-78 (279)
55 COG0382 UbiA 4-hydroxybenzoate 94.9 1.5 3.2E-05 40.0 15.2 41 191-231 49-90 (289)
56 PRK13595 ubiA prenyltransferas 94.2 3.9 8.5E-05 37.4 15.9 21 203-223 61-81 (292)
57 PRK12882 ubiA prenyltransferas 93.7 1.3 2.8E-05 40.1 12.1 52 194-246 43-97 (276)
58 PRK09573 (S)-2,3-di-O-geranylg 93.7 4.3 9.3E-05 36.8 15.4 52 194-246 42-96 (279)
59 PRK12324 phosphoribose diphosp 93.1 6.5 0.00014 36.1 15.6 50 196-245 53-106 (295)
60 PF01040 UbiA: UbiA prenyltran 92.4 2.9 6.3E-05 36.8 12.2 51 182-232 15-67 (257)
61 TIGR02056 ChlG chlorophyll syn 92.3 1.8 4E-05 39.8 11.0 47 199-246 64-113 (306)
62 PRK12883 ubiA prenyltransferas 91.9 3.4 7.4E-05 37.3 12.2 45 198-243 46-93 (277)
63 PRK12876 ubiA prenyltransferas 91.7 4.4 9.5E-05 37.3 12.6 40 192-231 50-90 (300)
64 PRK13106 ubiA prenyltransferas 91.5 6.3 0.00014 36.2 13.5 47 185-231 44-92 (300)
65 PLN02809 4-hydroxybenzoate non 91.2 3.5 7.6E-05 37.7 11.5 39 194-232 50-89 (289)
66 PRK12895 ubiA prenyltransferas 91.1 6.1 0.00013 36.1 12.9 53 193-245 41-97 (286)
67 TIGR01475 ubiA_other putative 90.7 3 6.5E-05 37.8 10.6 56 184-239 30-90 (282)
68 PRK12871 ubiA prenyltransferas 90.6 4.3 9.3E-05 37.3 11.5 64 185-248 36-113 (297)
69 PRK13591 ubiA prenyltransferas 90.3 6.1 0.00013 36.4 12.1 39 179-220 51-89 (307)
70 PRK12888 ubiA prenyltransferas 90.0 7 0.00015 35.6 12.3 48 184-231 33-82 (284)
71 PRK12875 ubiA prenyltransferas 89.8 4.5 9.8E-05 36.9 10.9 19 207-225 63-81 (282)
72 PLN00012 chlorophyll synthetas 89.8 4.3 9.4E-05 38.5 11.1 42 198-240 132-176 (375)
73 PRK12869 ubiA protoheme IX far 89.4 14 0.00029 33.6 13.8 60 186-245 32-96 (279)
74 PRK12870 ubiA 4-hydroxybenzoat 89.2 4.1 8.8E-05 37.3 10.2 37 195-231 52-89 (290)
75 PRK12847 ubiA 4-hydroxybenzoat 89.2 7.3 0.00016 35.4 11.8 37 195-231 51-88 (285)
76 PRK12873 ubiA prenyltransferas 89.0 8.7 0.00019 35.2 12.1 49 194-242 49-101 (294)
77 PRK12872 ubiA prenyltransferas 88.8 16 0.00034 33.0 13.8 35 192-226 39-74 (285)
78 PRK08238 hypothetical protein; 88.6 3.5 7.6E-05 40.5 9.9 54 193-246 230-287 (479)
79 TIGR01474 ubiA_proteo 4-hydrox 88.6 5.4 0.00012 36.2 10.5 37 195-231 46-83 (281)
80 TIGR01473 cyoE_ctaB protoheme 88.0 19 0.00042 32.5 13.8 59 187-245 32-95 (280)
81 PRK04375 protoheme IX farnesyl 87.9 8.9 0.00019 35.1 11.6 52 195-246 50-105 (296)
82 PRK13362 protoheme IX farnesyl 87.9 18 0.00039 33.4 13.6 50 197-246 55-108 (306)
83 PRK12886 ubiA prenyltransferas 87.8 7.9 0.00017 35.4 11.1 39 193-231 46-85 (291)
84 PLN02776 prenyltransferase 87.7 21 0.00045 33.5 13.8 59 187-245 26-89 (341)
85 PRK12848 ubiA 4-hydroxybenzoat 87.2 9.3 0.0002 34.7 11.2 48 198-245 51-102 (282)
86 PRK12392 bacteriochlorophyll c 87.1 8.2 0.00018 36.0 10.9 45 204-249 65-112 (331)
87 PRK05951 ubiA prenyltransferas 87.0 8.2 0.00018 35.3 10.8 42 183-224 33-75 (296)
88 TIGR01476 chlor_syn_BchG bacte 86.6 7.9 0.00017 35.1 10.4 46 199-245 48-96 (283)
89 PRK07566 bacteriochlorophyll/c 86.5 6.6 0.00014 36.3 9.9 46 200-246 76-124 (314)
90 PRK12887 ubiA tocopherol phyty 85.8 29 0.00063 32.0 16.5 32 208-240 72-106 (308)
91 PRK12874 ubiA prenyltransferas 85.1 18 0.00039 33.0 12.0 37 186-222 43-80 (291)
92 PRK12878 ubiA 4-hydroxybenzoat 84.0 14 0.0003 34.2 10.8 27 195-221 78-104 (314)
93 PRK13592 ubiA prenyltransferas 84.0 12 0.00026 34.3 10.1 49 197-245 54-104 (299)
94 PRK13105 ubiA prenyltransferas 82.3 39 0.00085 30.8 14.6 21 207-227 52-72 (282)
95 PRK07419 1,4-dihydroxy-2-napht 80.4 38 0.00082 31.2 12.2 60 54-119 171-230 (304)
96 PRK13387 1,4-dihydroxy-2-napht 79.5 24 0.00053 32.6 10.7 37 184-220 33-70 (317)
97 TIGR00751 menA 1,4-dihydroxy-2 75.5 64 0.0014 29.3 14.4 32 185-216 23-55 (284)
98 TIGR02235 menA_cyano-plnt 1,4- 72.6 66 0.0014 29.3 11.4 37 183-219 28-67 (285)
99 COG1575 MenA 1,4-dihydroxy-2-n 72.0 50 0.0011 30.4 10.3 31 54-85 173-203 (303)
100 PRK06080 1,4-dihydroxy-2-napht 69.9 41 0.00089 30.5 9.6 62 54-121 165-226 (293)
101 COG0109 CyoE Polyprenyltransfe 60.7 1.4E+02 0.003 27.5 12.2 65 185-249 47-116 (304)
102 PLN02878 homogentisate phytylt 57.0 1.1E+02 0.0023 28.0 9.4 23 208-231 42-64 (280)
103 COG4858 Uncharacterized membra 53.7 1.4E+02 0.0031 25.5 9.3 11 4-14 90-100 (226)
104 cd00867 Trans_IPPS Trans-Isopr 44.8 9.4 0.0002 33.2 0.7 29 202-230 159-197 (236)
105 TIGR03750 conj_TIGR03750 conju 41.5 54 0.0012 25.5 4.4 33 99-131 14-46 (111)
106 PLN02922 prenyltransferase 38.7 3.2E+02 0.007 25.2 11.4 32 185-216 46-78 (315)
107 COG5478 Predicted small integr 34.3 71 0.0015 25.8 4.1 95 8-111 2-108 (141)
108 TIGR02748 GerC3_HepT heptapren 33.7 2.5E+02 0.0055 25.9 8.4 61 17-85 157-217 (319)
109 COG1033 Predicted exporters of 30.3 3.3E+02 0.0071 28.5 9.1 61 23-85 215-279 (727)
110 PF15169 DUF4564: Domain of un 29.8 25 0.00053 29.9 0.9 33 193-225 48-80 (187)
111 COG2981 CysZ Uncharacterized p 29.5 4.1E+02 0.0088 23.7 13.2 23 194-216 224-246 (250)
112 PRK10581 geranyltranstransfera 28.3 27 0.00059 32.0 1.0 38 201-238 215-263 (299)
113 PF11990 DUF3487: Protein of u 28.0 2.3E+02 0.0051 22.3 6.1 33 99-131 17-49 (121)
114 PF12046 DUF3529: Protein of u 27.8 2.9E+02 0.0062 23.3 6.8 17 93-109 66-82 (173)
115 PF00348 polyprenyl_synt: Poly 25.5 3E+02 0.0064 24.4 7.2 83 16-106 132-214 (260)
116 PRK10888 octaprenyl diphosphat 24.5 4.9E+02 0.011 24.1 8.6 61 17-85 158-218 (323)
117 COG0142 IspA Geranylgeranyl py 23.7 3E+02 0.0065 25.4 7.0 55 192-247 69-123 (322)
118 PF10003 DUF2244: Integral mem 23.7 2.4E+02 0.0052 22.6 5.6 25 101-125 5-29 (140)
119 PF07062 Clc-like: Clc-like; 22.9 5.1E+02 0.011 22.5 7.9 32 209-240 81-112 (211)
120 PF05360 YiaAB: yiaA/B two hel 21.4 2.5E+02 0.0055 18.5 6.3 24 190-213 30-53 (53)
No 1
>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=100.00 E-value=3.6e-55 Score=398.97 Aligned_cols=286 Identities=23% Similarity=0.343 Sum_probs=252.4
Q ss_pred hccccHHHHHHhhchhHHHHHHHHHHHHHHHHhhhCCCcccccHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCC
Q psy14930 14 MLQEKLSSYLLALRPWSLSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHCAGNVVNTYYDYVLGIDTSRRS 93 (308)
Q Consensus 14 ~~~~~~~~~l~~~Rp~~l~~~~~~~~~g~~la~~~~g~~~~~~~~~~ll~~l~~~~~~~~~n~~Ndy~D~~~g~D~~~~~ 93 (308)
+.+++++.|++++||++++.+++|+++|.++|++.++ ++|+..+++++++++++|+++|.+|||+||++|+|++++
T Consensus 7 ~~~~~~~~w~~a~RP~tl~asl~pv~lG~a~a~~~~~---~f~~~~~ll~ll~~~l~q~~~N~~NDy~D~~~G~D~~~~- 82 (304)
T PRK07419 7 MSPSRRKLWLAAIKPPMYSVAIMPILVGTAWALGETG---VFRLDQFITFLLAAILILAWENLSNDVFDADTGIDKNKF- 82 (304)
T ss_pred CCccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCC---CccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccc-
Confidence 3556789999999999999999999999999988765 899999999999999999999999999999999997422
Q ss_pred CCCceecccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHheeccCCC-CCCcccchhHHHHHHHH
Q psy14930 94 DDRTLVDHILSESELVSLGVMLYLVSSAGFILLSYISPAKMEHLAAVFFCGLSSSFLYSGCL-GLKYTALGDVLILMIFG 172 (308)
Q Consensus 94 ~~r~l~~g~ls~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~Ys~~p-~lk~~~lge~~v~~~~G 172 (308)
+..+++..++++++..+..++++++++|+++.+..+. . ...+.+.|+..+++||.|| |+||+|+||+.+++.||
T Consensus 83 --~~~~~~~~~~~~v~~~~~~~~~~a~~~Gl~L~~~~g~--~-~l~ig~~g~~~~~~YT~gP~~l~y~gLGE~~v~l~~G 157 (304)
T PRK07419 83 --HSVVNLTGNKSLVFWLANLFLLLGLLGILAIALQSDW--T-VLGLVLLCCFLGYLYQGPPFRLGYQGLGEPLCFLAFG 157 (304)
T ss_pred --cCcccccCcHHHHHHHHHHHHHHHHHHHHHHHHhhcH--H-HHHHHHHHHHHhheccCCCcccCCCCchHHHHHHHHH
Confidence 1233455579999999999999999999988876652 2 2333444678899999999 99999999999999999
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHhhcCCCChhhhHhcCCcccceeecchhhHHHHHHHHHHHHHHHHHH
Q psy14930 173 PITVLFAFMSQTGRWEWATICYALPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVYYAFLLFIPYIVFVVW 252 (308)
Q Consensus 173 ~l~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~~~~~~~~ 252 (308)
++++.++||+|++++++..++.++|.++++.+++++||+||+|+||++||||+|+++|+|+++++|..+...+|+..+..
T Consensus 158 ~l~v~g~~yv~t~~~~~~~~~~sl~~gll~~~IL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~ay~~~i~~ 237 (304)
T PRK07419 158 PLAVAAALYSQTPSWSLIPLAASIILGLATSLILFCSHFHQVEDDLAAGKRSPIVRLGTKRGAQLLPWIVGLIYALELLP 237 (304)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHcCCcchhhHHHcCCcceeeeechHhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999888766
Q ss_pred HH--HHHHHHHHHHHHHHHHHHHHHHhcC----CccccccHHHHHHHHHHHHHHHHHHHHhC
Q psy14930 253 GM--NHSYYYLLPLVTLKSAFSIEKQFRC----PDKIHLVPKLTAKLNLYFGFLYVVAVTLA 308 (308)
Q Consensus 253 ~~--~~~~~~ll~ll~lp~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 308 (308)
.. ..|++.+++++++|++.+..|.+++ ++++++..+++++.++++|+++++|++++
T Consensus 238 v~~g~~p~~~Ll~ll~lPl~~~~~~~~~~~~~~~~~l~~~l~~t~~~~~l~g~l~~l~~~l~ 299 (304)
T PRK07419 238 VLLGFWPWTTLLSLLSLPFAIKLIRLVRENHDQPEKVSNSKFIAVRFHFWSGLLLSLGLILA 299 (304)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54 3677888999999999999887654 24567788899999999999999999864
No 2
>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=100.00 E-value=1.2e-54 Score=398.90 Aligned_cols=285 Identities=21% Similarity=0.340 Sum_probs=254.5
Q ss_pred ccHHHHHHhhchhHHHHHHHHHHHHHHHHhhhCCCcccccHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCC-CCCCC
Q psy14930 17 EKLSSYLLALRPWSLSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHCAGNVVNTYYDYVLGIDTS-RRSDD 95 (308)
Q Consensus 17 ~~~~~~l~~~Rp~~l~~~~~~~~~g~~la~~~~g~~~~~~~~~~ll~~l~~~~~~~~~n~~Ndy~D~~~g~D~~-~~~~~ 95 (308)
|++|.|++++||+++++++.|+++|.++|++.++ ++|+..+++++++++++|+++|++|||+|+++|.|++ .++++
T Consensus 1 m~~~~~~~~~Rp~tl~~s~~pvllG~a~a~~~~~---~~~~~~~ll~ll~~~~~~~~~N~~NDy~D~~~g~D~~~~~~~~ 77 (317)
T PRK13387 1 MSAKLFLKLVEIHTKIASFFPVILGTLFSLYVAK---IFDWLLFLAFMVAMLAFDIATTAINNYMDFKKALDTADYVGIG 77 (317)
T ss_pred CCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCC---CccHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCCcccccCCc
Confidence 4579999999999999999999999999987665 8999999999999999999999999999999999985 46789
Q ss_pred CceecccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHheeccCCC-CCCcccchhHHHHHHHHHH
Q psy14930 96 RTLVDHILSESELVSLGVMLYLVSSAGFILLSYISPAKMEHLAAVFFCGLSSSFLYSGCL-GLKYTALGDVLILMIFGPI 174 (308)
Q Consensus 96 r~l~~g~ls~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~Ys~~p-~lk~~~lge~~v~~~~G~l 174 (308)
|++++|.+|+|+++..+..++.+++++|+++.+..+. . ..++.+.++..+++||.|| ++||+|+||+.+++.+|++
T Consensus 78 ~~i~~~~ls~~~v~~~~~~~~~ia~~~Gl~L~~~~g~--~-~l~igl~g~~~~~~Yt~gP~~l~y~gLGe~~v~i~~G~~ 154 (317)
T PRK13387 78 NGIGQHGLKPRNVLTVILLMYVVAAILGVYLCMNTSW--L-LLVIGLICFAIGILYTGGPLPLSRMPLGEIFSGLTMGFG 154 (317)
T ss_pred chhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcH--H-HHHHHHHHHHHhhhhcCCCcccccCccHHHHHHHHHHHH
Confidence 9999999999999999999999999999998876652 1 2333445777899999999 9999999999999999999
Q ss_pred HHHHHHHHhcCCCcHHHHH--------------------HHHHHHHHHHHHHhhcCCCChhhhHhcCCcccceeecchhh
Q psy14930 175 TVLFAFMSQTGRWEWATIC--------------------YALPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYS 234 (308)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~l--------------------~~l~~~l~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a 234 (308)
++.+++|+|++++++..++ .++|.++.+.+++++||+||+|+||++||||+|+++|+|+|
T Consensus 155 ~v~g~~yv~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~slp~g~l~~~ill~Nn~~D~e~D~~~gk~TL~v~lG~~~a 234 (317)
T PRK13387 155 IFLLAVYINTNTITIESLLFQGEMFTIQGNLIAIIAIGVISLPIIFTIANIMLANNLRDLDEDIKNHRYTLVYYIGREKG 234 (317)
T ss_pred HHHHHHHHhcCCCchHHHHhcccchhhcchhHHHHHHHHHHHHHHHHHHHHHHhcCCccchhHHHcCCeeeeeeEcHHhH
Confidence 9999999999998887665 89999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhcCC----ccccccHHHHHHHHHHHHHHHHHHHHh
Q psy14930 235 HVYYAFLLFIPYIVFVVWGM--NHSYYYLLPLVTLKSAFSIEKQFRCP----DKIHLVPKLTAKLNLYFGFLYVVAVTL 307 (308)
Q Consensus 235 ~~l~~~l~~~~~~~~~~~~~--~~~~~~ll~ll~lp~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~~l~~ 307 (308)
++++..+...+|+.++.... ..|++.+++++++|++.+..|.++++ +++++..+++++.+..+++++.+|+++
T Consensus 235 ~~l~~~l~~~a~l~~~~~v~~g~lp~~~ll~ll~lP~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~i~~ll 313 (317)
T PRK13387 235 VVLFAILFYASYLAIAVIVLMGYISPWALLSFLTLRKPISNLQSFQKEAKDPKYFVIAIRNTVLTNTTFGFLLSASLLI 313 (317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988766543 36778889999999999998876543 445667788999999999999999875
No 3
>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase. This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.
Probab=100.00 E-value=4.2e-54 Score=389.38 Aligned_cols=274 Identities=24% Similarity=0.376 Sum_probs=244.3
Q ss_pred chhHHHHHHHHHHHHHHHHhhhCCCcccccHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCC-CCCCCCceecccCCH
Q psy14930 27 RPWSLSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHCAGNVVNTYYDYVLGIDTS-RRSDDRTLVDHILSE 105 (308)
Q Consensus 27 Rp~~l~~~~~~~~~g~~la~~~~g~~~~~~~~~~ll~~l~~~~~~~~~n~~Ndy~D~~~g~D~~-~~~~~r~l~~g~ls~ 105 (308)
||++++.++.|+++|.++|+++ + .+|+..+++++++++++|+++|+.|||+|+++|+|++ +.+|+|++++|.+|+
T Consensus 1 Rp~tl~~s~~pv~lG~ala~~~-~---~f~~~~~ll~~~~~~~~q~~~N~~NDy~D~~~G~D~~~~~~~~r~i~~g~is~ 76 (284)
T TIGR00751 1 RPKTLPLAIAPIVAGTALAAWL-H---AFVWLVALLALATAVLLQILSNYANDYGDGIKGSDTDDRIGPLRGVQKGLITP 76 (284)
T ss_pred CCchHHHHHHHHHHHHHHHHHc-C---CccHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCChhhccCCcchhcCCCCCH
Confidence 9999999999999999999876 4 8999999999999999999999999999999999964 457899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCchh---hHHHHHHHHHHHHheeccCCC-CCCcccchhHHHHHHHHHHHHHHHHH
Q psy14930 106 SELVSLGVMLYLVSSAGFILLSYISPAKM---EHLAAVFFCGLSSSFLYSGCL-GLKYTALGDVLILMIFGPITVLFAFM 181 (308)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~l~~~~~~~~~~~Ys~~p-~lk~~~lge~~v~~~~G~l~~~~~~~ 181 (308)
++++..+..++.+++++|+++.+..+..+ .....+.+.+++.+++||.|| |+||+|+||+.++++||++++.++||
T Consensus 77 ~~v~~~~~~~~~~a~~~Gi~l~~~~~~~~~~~~~~l~lg~~~~~~~~~Yt~gP~~l~y~gLGE~~v~i~~G~l~v~g~~y 156 (284)
T TIGR00751 77 REVKTALITSVALGALSGLVLALLAAPNLSDLFWFIALGALCIAAAITYTVGSKPYGYAGLGDISVLVFFGPLAVLGTQY 156 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHHHhHhhcCCCCccccCchHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998877665211 112233344677899999999 99999999999999999999999999
Q ss_pred HhcCCCcHHHHHHHHHHHHHHHHHHhhcCCCChhhhHhcCCcccceeecchhhHHHHHHHHHHHHHHHHHHHH--HHHHH
Q psy14930 182 SQTGRWEWATICYALPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVYYAFLLFIPYIVFVVWGM--NHSYY 259 (308)
Q Consensus 182 ~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~~~~~~~~~~--~~~~~ 259 (308)
+|++++++..++.++|.++++.+++++||+||+|+|+++||||+|+++|+|+++++|..+...+|+..+.... ..|+|
T Consensus 157 vq~~~~~~~~ll~sl~~g~l~~~il~~Nn~~D~~~D~~~Gk~Tl~v~lG~~~a~~l~~~l~~~ay~~~~~~~~~~~~p~~ 236 (284)
T TIGR00751 157 LQAHRVDWVGILPAVATGLLACAVLNINNLRDIPTDARAGKNTLAVRLGDARTRMYHQGLLAVAGVCTFVFMLATPISWW 236 (284)
T ss_pred HhcCCCCHHHHHHHHHHHHHHHHHHHHcCcccchhHHHcCCEeehhhcchHhHHHHHHHHHHHHHHHHHHHHHHhhchHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999987766543 36778
Q ss_pred HHHHHHHHHHHHHHHHHhcC---CccccccHHHHHHHHHHHHHHHHHH
Q psy14930 260 YLLPLVTLKSAFSIEKQFRC---PDKIHLVPKLTAKLNLYFGFLYVVA 304 (308)
Q Consensus 260 ~ll~ll~lp~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~ 304 (308)
.+++++++|++.+..|.+++ ++++++..+++++.++++++++.+|
T Consensus 237 ~ll~ll~lPl~~~~~~~~~~~~~~~~l~~~l~~t~~~~~l~~~l~~ig 284 (284)
T TIGR00751 237 CVLFLLAAPLLLKAAGPVRSGRGPRELRPVLRDTGLAMLLWNLLFALG 284 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 88899999999999887754 3567788899999999999999864
No 4
>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase. This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.
Probab=100.00 E-value=1.3e-53 Score=386.40 Aligned_cols=276 Identities=22% Similarity=0.304 Sum_probs=243.3
Q ss_pred HHHhhchhHHHHHHHHHHHHHHHHhhhCCCcccccHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCC-CCCCceec
Q psy14930 22 YLLALRPWSLSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHCAGNVVNTYYDYVLGIDTSRR-SDDRTLVD 100 (308)
Q Consensus 22 ~l~~~Rp~~l~~~~~~~~~g~~la~~~~g~~~~~~~~~~ll~~l~~~~~~~~~n~~Ndy~D~~~g~D~~~~-~~~r~l~~ 100 (308)
|++++||++++.++.|+++|.++|++.+| ++|+..+++++++++++|+++|++|||+||++|+|+++. ++.|.
T Consensus 2 w~~a~Rp~tl~~s~~pv~lG~alA~~~~~---~f~~~~~ll~li~~l~~q~~~N~~Ndy~D~~~G~D~~~~~~~~~~--- 75 (285)
T TIGR02235 2 WLAAIKPPLYSVAVMPILVGTAVAWGQGG---VFHLDRFALFLIAAILILAWINLTNDVFDSDTGIDRFKLHSIVNL--- 75 (285)
T ss_pred hHHHhhhhHHHHHHHHHHHHHHHHHHcCC---CcCHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCCccccCCcccc---
Confidence 78999999999999999999999988766 899999999999999999999999999999999997433 33343
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHheeccCCC-CCCcccchhHHHHHHHHHHHHHHH
Q psy14930 101 HILSESELVSLGVMLYLVSSAGFILLSYISPAKMEHLAAVFFCGLSSSFLYSGCL-GLKYTALGDVLILMIFGPITVLFA 179 (308)
Q Consensus 101 g~ls~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~Ys~~p-~lk~~~lge~~v~~~~G~l~~~~~ 179 (308)
..|+++++..+..++.+++++|+++.+..+ +. ...+...++..+++||.|| |+||+|+||+.+++.||++++.++
T Consensus 76 -~~~~~~v~~~~~~~~~ia~~~g~~L~~~~~--~~-~l~lg~~g~~~~~~Yt~gP~~l~y~gLGE~~v~l~~G~l~v~g~ 151 (285)
T TIGR02235 76 -TGSRSLVFWLANFFLLIGLVGIAALSWRWQ--IT-VLALVGLCCFLGYLYQGPPFRLGYQGLGEPICWLCFGPLAIAAA 151 (285)
T ss_pred -cCcHHHHHHHHHHHHHHHHHHHHHHHHHhh--HH-HHHHHHHHHHHHHhhcCCCcccCCCCccHHHHHHHHHHHHHHHH
Confidence 346899999999999999999988877654 22 2233344778899999999 999999999999999999999999
Q ss_pred HHHhcCCCcHHHHHHHHHHHHHHHHHHhhcCCCChhhhHhcCCcccceeecchhhHHHHHHHHHHHHHHHHHHHH--HHH
Q psy14930 180 FMSQTGRWEWATICYALPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVYYAFLLFIPYIVFVVWGM--NHS 257 (308)
Q Consensus 180 ~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~~~~~~~~~~--~~~ 257 (308)
||+|++++++..++.++|.++++.+++++||+||+|+|+++||||+|+++|+|++++++..+...+|+..+.... ..|
T Consensus 152 ~yvqt~~~~~~~~l~sl~~gl~~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~~y~~~i~~v~~~~~p 231 (285)
T TIGR02235 152 LYAQSQSFSLIPWKASILVGLATTLILFCSHFHQVEDDLAHGKRSPVVRLGTKLAAKIVPWVISLSYVVLLIAVIGGFLP 231 (285)
T ss_pred HHHhCCcCcHHHHHHHHHHHHHHHHHHHhcCCccchhHHHcCCcceeheecHHhHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 999999999999999999999999999999999999999999999999999999999999999999998776553 356
Q ss_pred HHHHHHHHHHHHHHHHHHHhcC----CccccccHHHHHHHHHHHHHHHHHHHHh
Q psy14930 258 YYYLLPLVTLKSAFSIEKQFRC----PDKIHLVPKLTAKLNLYFGFLYVVAVTL 307 (308)
Q Consensus 258 ~~~ll~ll~lp~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 307 (308)
++.+++++++|++.+..|.+++ ++++++..+++++.++.+|+++++|+++
T Consensus 232 ~~~ll~ll~lPl~~~~~~~~~~~~~~~~~l~~~l~~t~~~~~~~g~l~~~g~~~ 285 (285)
T TIGR02235 232 WTTLLALASIPWAVKLIRLVRQNHNNPEQISNCKFIAVRFHFLSGILLTLGLLL 285 (285)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 6778999999999999887654 2556778889999999999999999864
No 5
>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]
Probab=100.00 E-value=2.5e-53 Score=378.26 Aligned_cols=284 Identities=30% Similarity=0.459 Sum_probs=249.2
Q ss_pred cHHHHHHhhchhHHHHHHHHHHHHHHHHhhhCCCcccccHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCC---CCCCC
Q psy14930 18 KLSSYLLALRPWSLSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHCAGNVVNTYYDYVLGIDT---SRRSD 94 (308)
Q Consensus 18 ~~~~~l~~~Rp~~l~~~~~~~~~g~~la~~~~g~~~~~~~~~~ll~~l~~~~~~~~~n~~Ndy~D~~~g~D~---~~~~~ 94 (308)
+.+.|++++||+++++++.|++.|.++|.++++ .+++..+++++++++++|+++|..|||+|+++|.|+ ++.+.
T Consensus 7 ~~~~wl~~~rP~Tl~aai~Pv~~G~a~A~~~~~---~f~~~~~ll~Li~~~~iq~~vN~~NdY~D~~KG~D~~g~~~~~~ 83 (303)
T COG1575 7 KTQLWLELARPKTLPAAIAPVIVGTALAFWYGK---SFNLLVALLALIAAILLQILVNLANDYFDYKKGTDTHGPDRLKQ 83 (303)
T ss_pred HHHHHHHhcCccchHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCccccc
Confidence 357899999999999999999999999998765 799999999999999999999999999999999996 24566
Q ss_pred CCceecccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHheeccCCC-CCCcccchhHHHHHHHHH
Q psy14930 95 DRTLVDHILSESELVSLGVMLYLVSSAGFILLSYISPAKMEHLAAVFFCGLSSSFLYSGCL-GLKYTALGDVLILMIFGP 173 (308)
Q Consensus 95 ~r~l~~g~ls~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~Ys~~p-~lk~~~lge~~v~~~~G~ 173 (308)
++.+.+..++++........+++.+.++++++...++ +. ...+...+++.+++||.+| |++|.|+||+.++++||+
T Consensus 84 ~g~I~~~~~k~~~~l~l~l~~~~g~~llg~~~~~~s~--~~-~l~lG~l~~~~g~~YTgGp~PlgY~gLGEi~~~vffG~ 160 (303)
T COG1575 84 SGLIVRQSMKPALILSLALFLLAGLALLGVILAALSD--WL-VLLLGLLCIAAGILYTGGPFPLGYMGLGEIFVGVFFGP 160 (303)
T ss_pred cceeecccCCHHHHHHHHHHHHHHHHHHHHHHHHHhh--hH-HHHHHHHHHHheeeeccCCcCcccCCHHHHHHHHHHHH
Confidence 7778888888888888888877777777766555544 22 2223334677899999999 999999999999999999
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHhhcCCCChhhhHhcCCcccceeecchhhHHHHHHHHHHHHHHHHHHH
Q psy14930 174 ITVLFAFMSQTGRWEWATICYALPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVYYAFLLFIPYIVFVVWG 253 (308)
Q Consensus 174 l~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~~~~~~~~~ 253 (308)
+.+.++||.|++++++..++.++|.++.+.+++++||+||+|+|+++||+|+|||+|+|+++.++..+...+|+..++..
T Consensus 161 l~v~g~~yiqt~~~~~~~ll~slp~gil~~~Il~aNNirDie~D~~~gk~TLavrLG~~~~~~l~~~l~~~a~l~~~~~~ 240 (303)
T COG1575 161 LIVLGAYYIQTGRLSWAILLPSLPVGILIANILLANNLRDIEEDIRNGKYTLAVRLGRKNARKLYAALLVVAYLAIVIFV 240 (303)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHhcccccchhHHhcCCcceeeeeccHhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999887754
Q ss_pred H--HHHHHHHHHHHHHHHHHHHHHHhcCC---ccccccHHHHHHHHHHHHHHHHHHHHh
Q psy14930 254 M--NHSYYYLLPLVTLKSAFSIEKQFRCP---DKIHLVPKLTAKLNLYFGFLYVVAVTL 307 (308)
Q Consensus 254 ~--~~~~~~ll~ll~lp~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~l~~ 307 (308)
. ..++|.++.++++|+++|..|.++++ ++..+..+.+.+.+..+++++.+++++
T Consensus 241 i~~~~~~~~ll~ll~~Pl~ir~~r~v~~~~~~~~~~p~l~~~~~~~~~~~~l~~~~i~~ 299 (303)
T COG1575 241 ILGLFPVWGLLFLLALPLAIRAARPVRQNQVPATLVPMLKNTVKANLLWNLLLAVGILL 299 (303)
T ss_pred HHHhchHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 35566688899999999999987653 567777889999999999999999875
No 6
>PLN02922 prenyltransferase
Probab=100.00 E-value=1.1e-52 Score=384.82 Aligned_cols=285 Identities=19% Similarity=0.249 Sum_probs=241.4
Q ss_pred hccccHHHHHHhhchhHHHHHHHHHHHHHHHHhhhCCCcccccHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCC-
Q psy14930 14 MLQEKLSSYLLALRPWSLSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHCAGNVVNTYYDYVLGIDTSRR- 92 (308)
Q Consensus 14 ~~~~~~~~~l~~~Rp~~l~~~~~~~~~g~~la~~~~g~~~~~~~~~~ll~~l~~~~~~~~~n~~Ndy~D~~~g~D~~~~- 92 (308)
|.++++|.|++++||++++.++.|+++|.++|++.+| .+||..+++++++++++|+++|++|||+||++|+|++++
T Consensus 10 ~~~~~~~~w~~a~Rp~tl~~s~~pv~lG~a~A~~~~g---~f~~~~~ll~ll~~~l~q~~~N~~NDy~D~~~G~D~~~~~ 86 (315)
T PLN02922 10 EELSRATLWWRAIKLPMYSVALVPLTVGAAAAYLQTG---LFDARRYGTLLLSSVLVITWLNLSNDAYDADTGVDKNKKE 86 (315)
T ss_pred CCccHHHHHHHHhCcchHHHHHHHHHHHHHHHHHcCC---CccHHHHHHHHHHHHHHHHHHHHHhhhhHhccCcCcccCC
Confidence 3556689999999999999999999999999988766 899999999999999999999999999999999997533
Q ss_pred CCCCceecccCCHHHHHHHHHHHHHHHHHHHHHHH-HhcCchhhHHHHHHHHHHHHheeccCCC-CCCcccchhHHHHHH
Q psy14930 93 SDDRTLVDHILSESELVSLGVMLYLVSSAGFILLS-YISPAKMEHLAAVFFCGLSSSFLYSGCL-GLKYTALGDVLILMI 170 (308)
Q Consensus 93 ~~~r~l~~g~ls~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~l~~~~~~~~~~~Ys~~p-~lk~~~lge~~v~~~ 170 (308)
++.|... |+++++..+..+++++++ +.++. ..... +. ..++.+.++..+++||.|| |+||+|+||+.++++
T Consensus 87 ~~~~~~~----s~~~v~~~~~~~~~la~~-g~~ll~~~~~~-~~-~l~iG~~g~~~~~~Yt~gP~pl~y~gLGE~~v~i~ 159 (315)
T PLN02922 87 SVVNLVG----SRRGVLAAAIGCLALGAA-GLVWASLVAGN-IR-VILLLAAAILCGYVYQCPPFRLSYKGLGEPLCFAA 159 (315)
T ss_pred CCCCccc----CHHHHHHHHHHHHHHHHH-HHHHHHHHccC-hH-HHHHHHHHHHHHHHHhcCCcccccCcchHHHHHHH
Confidence 3445544 999999999999888875 44443 32221 22 2334455778899999999 999999999999999
Q ss_pred HHHHHHHHHHHHhcC----------CCcHHHHHHHHHHHHHHHHHHhhcCCCChhhhHhcCCcccceeecchhhHHHHHH
Q psy14930 171 FGPITVLFAFMSQTG----------RWEWATICYALPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVYYAF 240 (308)
Q Consensus 171 ~G~l~~~~~~~~~~~----------~~~~~~~l~~l~~~l~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~l~~~ 240 (308)
||++++.++|++|++ +++++.++.++|.++++.+++++||+||+|+||++||||+|+++|+|++++++..
T Consensus 160 fG~l~v~g~y~~~~~~~~~~~~~~~~~~~~~~l~slp~gll~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~l~~~ 239 (315)
T PLN02922 160 FGPLATTAFYLALASGAGGSEMAILPLTPTVLSASVLVGLTTTLILFCSHFHQIDGDRAVGKMSPLVRLGTEKGSRVVRW 239 (315)
T ss_pred HHHHHHHHHHHHhcccccccccccccccHHHHHHHHHHHHHHHHHHHHccCcchhhHHHcCccceeeEEChHHHHHHHHH
Confidence 999999999999988 4677888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH--HHHHHH-HHHHHHHHHHHHHHHHhcC----CccccccHHHHHHHHHHHHHHHHHHHHhC
Q psy14930 241 LLFIPYIVFVVWGM--NHSYYY-LLPLVTLKSAFSIEKQFRC----PDKIHLVPKLTAKLNLYFGFLYVVAVTLA 308 (308)
Q Consensus 241 l~~~~~~~~~~~~~--~~~~~~-ll~ll~lp~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 308 (308)
+...+|+..+.... ..|.+. +++++++|++.+..+.+++ +++..+..+.+++.++++|+++++|++++
T Consensus 240 l~~~~y~~~i~~v~~~~~p~~~~l~~ll~lpl~~~~~~~~~~~~~~~~~l~~~~~~t~~~~~l~g~ll~~g~~l~ 314 (315)
T PLN02922 240 AVLLLYSLLAALGLLKALPLPCALLCFLTLPLGKLVVDFVEKNHKDNAKIFMAKYYCVRLHALFGAALALGLVLA 314 (315)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999988876654 355554 5788899998887776543 34456667789999999999999999875
No 7
>PRK05951 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=5.6e-52 Score=379.03 Aligned_cols=284 Identities=24% Similarity=0.335 Sum_probs=247.7
Q ss_pred ccHHHHHHhhchhHHHHHHHHHHHHHHHHhhhCCCcccccHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCC--C
Q psy14930 17 EKLSSYLLALRPWSLSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHCAGNVVNTYYDYVLGIDTSRRS--D 94 (308)
Q Consensus 17 ~~~~~~l~~~Rp~~l~~~~~~~~~g~~la~~~~g~~~~~~~~~~ll~~l~~~~~~~~~n~~Ndy~D~~~g~D~~~~~--~ 94 (308)
+++|.|++++||++++++..|+++|.++|++++| ++|+..+++++++++++|+++|.+|||+|+++|.|+++++ +
T Consensus 2 ~~~~~~~~~~Rp~tl~~s~~~v~lG~a~a~~~~~---~f~~~~~ll~~l~~~l~~~~~n~~Ndy~D~~~g~D~~~rt~~~ 78 (296)
T PRK05951 2 QNAKLFFIFTRPWSFVMTAIVAFFSIAYGYYLFR---SFDPLLGALMLLGYFLLHASLNVFNDYKDYVLDCDHHETTGYR 78 (296)
T ss_pred ccHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcC---CcCHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCccccccCCC
Confidence 4689999999999999999999999999998766 8999999999999999999999999999999999986544 7
Q ss_pred CCceecccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHheeccCCC-CCCcccchhHHHHHHHHH
Q psy14930 95 DRTLVDHILSESELVSLGVMLYLVSSAGFILLSYISPAKMEHLAAVFFCGLSSSFLYSGCL-GLKYTALGDVLILMIFGP 173 (308)
Q Consensus 95 ~r~l~~g~ls~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~Ys~~p-~lk~~~lge~~v~~~~G~ 173 (308)
+||+++|++|++|++..+..+..+++.+++++....+. . ...+.+.++..++.||.|| ++||+|+||+.+++.+|+
T Consensus 79 ~r~l~~G~is~~~~~~~~~~~~~ia~~~g~~l~~~~~~--~-~l~l~~~~~~~~~~Yt~~P~~lky~glGe~~v~~~~g~ 155 (296)
T PRK05951 79 QHPIQAGIMTLGHLRVLGIALGAIALQLGWSLVLDRGI--G-AVTLALLGVFLWTCYMGPPFFLKYRWLGEHLVFYAWSH 155 (296)
T ss_pred CCccccCCcCHHHHHHHHHHHHHHHHHHHHHHHHhccH--H-HHHHHHHHHHHHHHHcCCCcccCCCCchHHHHHHHHHH
Confidence 89999999999999999999888888887776654442 1 2233345677899999999 999999999999999999
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHhhcCCCChhhhHhcCCcccceeecchhhHHHHHHHHHHHHHHHHHHH
Q psy14930 174 ITVLFAFMSQTGRWEWATICYALPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVYYAFLLFIPYIVFVVWG 253 (308)
Q Consensus 174 l~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~~~~~~~~~ 253 (308)
+++++++++|++++++..+..++|.++++.+++++||+||+|+||++||||+|+++|+|++ +++..+...+|+.++.+.
T Consensus 156 ~~vlg~~~~~~~~~~~~~~~~sl~~~l~~~~il~~n~~~D~e~D~~~G~~Tlav~lG~~~a-~~~~~~~~~~~~~~~~~~ 234 (296)
T PRK05951 156 MLVMGLIYVWLGNLSSPNLLAGVPLGLLMALVLLSNNLRDIEDDERKGIPTLAVIFGRRGA-ALYIFALLSPYVILQILL 234 (296)
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHCCCccchhHHHCCCeeeeeeEcHhhH-HHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999 888888888888776655
Q ss_pred H--HHHHHHHHHHHHHHHHHHHHHHhcCCccccccHHHHHHHHHHHHHHHHHHHHhC
Q psy14930 254 M--NHSYYYLLPLVTLKSAFSIEKQFRCPDKIHLVPKLTAKLNLYFGFLYVVAVTLA 308 (308)
Q Consensus 254 ~--~~~~~~ll~ll~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 308 (308)
. ..|.+.+++++++|++.+..+..+++.+.++ +..+++.++.+|+++.+|++++
T Consensus 235 ~~g~~~~~~l~~ll~lp~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~l~~~~~~l~ 290 (296)
T PRK05951 235 IAILTPLISLWALLSLLVAYALCLWQLRKFPPDP-DEATVQLFMLFGYLYILATLLS 290 (296)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHhhCcccc-cHHHHHHHHHHHHHHHHHHHHH
Confidence 3 3566778889999999988776654333333 5579999999999999998764
No 8
>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated
Probab=100.00 E-value=2e-50 Score=369.28 Aligned_cols=285 Identities=29% Similarity=0.413 Sum_probs=251.2
Q ss_pred ccHHHHHHhhchhHHHHHHHHHHHHHHHHhhhCCCcccccHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCC-CCCCC
Q psy14930 17 EKLSSYLLALRPWSLSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHCAGNVVNTYYDYVLGIDTS-RRSDD 95 (308)
Q Consensus 17 ~~~~~~l~~~Rp~~l~~~~~~~~~g~~la~~~~g~~~~~~~~~~ll~~l~~~~~~~~~n~~Ndy~D~~~g~D~~-~~~~~ 95 (308)
|++|.|++++||++++.+..|+++|.++|+.. + .+++..+++++++++++|.++|.+|||+|+|+|+|++ +++++
T Consensus 1 ~~~~~~~~~~Rp~~~~~~~~p~l~G~~~a~~~-~---~~~~~~~ll~~l~~~l~~~~~n~~Ndy~D~~~g~D~~~~~~~~ 76 (293)
T PRK06080 1 STFKAWLELARPKTLPAAFAPVLVGTALAYWL-G---SFHPLLALLALLAALLLQIATNLANDYGDYVKGTDTEDRVGPL 76 (293)
T ss_pred CCHHHHHHHhhHHHHHHHHHHHHHHHHHHHHc-C---CccHHHHHHHHHHHHHHHHHHHHHHhHHHhccCCCcccccCCc
Confidence 45899999999999999999999999999653 4 7899999999999999999999999999999999965 57899
Q ss_pred CceecccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHheeccCCC-CCCcccchhHHHHHHHHHH
Q psy14930 96 RTLVDHILSESELVSLGVMLYLVSSAGFILLSYISPAKMEHLAAVFFCGLSSSFLYSGCL-GLKYTALGDVLILMIFGPI 174 (308)
Q Consensus 96 r~l~~g~ls~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~Ys~~p-~lk~~~lge~~v~~~~G~l 174 (308)
||+++|++|++|++..+..+..+++++|+++....+. ....+.+.+++.+++||.+| ++||+|+||+.+++.+|++
T Consensus 77 r~l~~G~is~~~~~~~~~~~~~~~~~~g~~l~~~~~~---~~~~~~~~~~~~~~~Ys~~p~~~~~~glge~~~~~~~G~~ 153 (293)
T PRK06080 77 RAIGRGGISPKQVKRAAIAFFGLAALLGLYLVAVSGW---WLLLLGLLCIAAAILYTGGPKPYGYTGLGELFVGVFFGLV 153 (293)
T ss_pred ccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhH---HHHHHHHHHHHHhhhhcCCCCccCCCCcHHHHHHHHHHHH
Confidence 9999999999999999999998888888877665431 12223334566889999998 8999999999999999999
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHhhcCCCChhhhHhcCCcccceeecchhhHHHHHHHHHHHHHHHHHHHH
Q psy14930 175 TVLFAFMSQTGRWEWATICYALPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVYYAFLLFIPYIVFVVWGM 254 (308)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~~~~~~~~~~ 254 (308)
++.++++.|+++++++.++.++|.++++.++++.||+||+|+||++|+||+|+++|+|++++++..+..++|+..+....
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~n~~~D~~~D~~~G~~Tl~v~lG~~~a~~~~~~l~~~~~~~~~~~~~ 233 (293)
T PRK06080 154 IVLGTYYLQAGTVDSAVFLPALPCGLLIGAVLLANNIRDIETDRENGKNTLAVRLGDKNARRLHAALLALAYLCIVLLAL 233 (293)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHcCCeeEEeeECcHhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988776554
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHhcC---CccccccHHHHHHHHHHHHHHHHHHHHhC
Q psy14930 255 --NHSYYYLLPLVTLKSAFSIEKQFRC---PDKIHLVPKLTAKLNLYFGFLYVVAVTLA 308 (308)
Q Consensus 255 --~~~~~~ll~ll~lp~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 308 (308)
..|++.+++++++|++.++++.+++ +++..+..+.+++.+..+++++++|++++
T Consensus 234 ~~~~~~~~ll~ll~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (293)
T PRK06080 234 LGLASPWGLLFLLSLPLAVKAARPVLRKQKPETLIPALKATGKTNLLFGLLFAIGLLLS 292 (293)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3577888999999999999887654 24455667789999999999999999875
No 9
>KOG4581|consensus
Probab=100.00 E-value=9e-46 Score=312.63 Aligned_cols=292 Identities=53% Similarity=0.916 Sum_probs=272.8
Q ss_pred ccccHHHHHHhhchhHHHHHHHHHHHHHHHHhhhCCCcccccHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCC
Q psy14930 15 LQEKLSSYLLALRPWSLSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHCAGNVVNTYYDYVLGIDTSRRSD 94 (308)
Q Consensus 15 ~~~~~~~~l~~~Rp~~l~~~~~~~~~g~~la~~~~g~~~~~~~~~~ll~~l~~~~~~~~~n~~Ndy~D~~~g~D~~~~~~ 94 (308)
..|+.+.|+.+.|||++.+++.|..+|.++|++.+| ..+++...+.++..+++..|.++|+.|.|||+.+|+|+ ++..
T Consensus 57 ~~~k~~syllalrpws~sasl~p~~lgsalayrs~~-~~d~~l~~~fl~a~avlavh~agnlvntyfdf~kgid~-kkad 134 (359)
T KOG4581|consen 57 TFMKCASYLLALRPWSFSASLTPTALGSALAYRSHG-AEDFRLATFFLCAFAVLAVHCAGNLVNTYFDFIKGIDH-KKAD 134 (359)
T ss_pred HHHHHHHHHhhhcccccccccchHhhhhHHHHhhcc-ccchhHHHHHHHHhhheeeecccchhhhhhhhhhcccc-cccc
Confidence 567889999999999999999999999999998776 23467777888989999999999999999999999995 5677
Q ss_pred CCceecccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHheeccCCCCCCcccchhHHHHHHHHHH
Q psy14930 95 DRTLVDHILSESELVSLGVMLYLVSSAGFILLSYISPAKMEHLAAVFFCGLSSSFLYSGCLGLKYTALGDVLILMIFGPI 174 (308)
Q Consensus 95 ~r~l~~g~ls~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~Ys~~p~lk~~~lge~~v~~~~G~l 174 (308)
+|.+++..+++.++.+++..++..+|.+...+.+.++.+++.++++.+||+...+.||++..+||..+|++.+.+.|||+
T Consensus 135 drtlvd~il~~~dvv~~g~~ly~~gc~~~~~l~~lsp~klehlaliyfggls~sflytggigfkyialgdliili~fgpi 214 (359)
T KOG4581|consen 135 DRTLVDHILEKDDVVRFGAFLYMAGCGCAACLAVLSPAKLEHLALIYFGGLSGSFLYTGGIGFKYIALGDLIILILFGPI 214 (359)
T ss_pred chhHHHHhcChhheehhhHHHHHhcchHHHHHHhCCHhhhhhhhhhhccCcccceeEecccceEEEeccCEEEEEeechH
Confidence 89999999999999999999999999988888889998888899999999999999999878999999999999999999
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHhhcCCCChhhhHhcCCcccceeecchhhHHHHHHHHHHHHHHHHHHHH
Q psy14930 175 TVLFAFMSQTGRWEWATICYALPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVYYAFLLFIPYIVFVVWGM 254 (308)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~~~~~~~~~~ 254 (308)
.++.+|..|+|+..|.+.-+++|..+-+.++++.||.||.|.||++|+-|+++.+|+..+..+|..+.+.+|+++.++..
T Consensus 215 avlfaf~~q~g~l~~~~l~yaiplalnteailhsnntrd~dndr~agivtlailig~t~s~ily~~llf~py~lf~i~~~ 294 (359)
T KOG4581|consen 215 AVLFAFAIQTGHLAIFPLGYAIPLALNTEAILHSNNTRDADNDREAGIVTLAILIGPTASHILYAMLLFAPYLLFFIFAL 294 (359)
T ss_pred HHHHHHHHhcCceeEEeehheeeeccchHHHhccCCCcccccccccCeEEEEEeecccHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCccccccHHHHHHHHHHHHHHHHHHHHhC
Q psy14930 255 NHSYYYLLPLVTLKSAFSIEKQFRCPDKIHLVPKLTAKLNLYFGFLYVVAVTLA 308 (308)
Q Consensus 255 ~~~~~~ll~ll~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 308 (308)
..+.|..+|++++|++++.-|++|+.+..++.+++++|.|+++|+++..+++.+
T Consensus 295 ~~si~~~lplltip~afqiek~frneqa~~~lp~qtakln~~~gi~yv~~~~~a 348 (359)
T KOG4581|consen 295 HCSISFALPLLTIPMAFQIEKQFRNEQAFHKLPQQTAKLNFFFGIFYVFACCCA 348 (359)
T ss_pred HHHHHHHhHHhhchhHHhHHHHhhhHhhhhhcchhhhhHHHHHHHHHHHHHHHh
Confidence 888999999999999999999999988999999999999999999999998754
No 10
>TIGR02056 ChlG chlorophyll synthase, ChlG. This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).
Probab=100.00 E-value=2e-41 Score=310.66 Aligned_cols=275 Identities=17% Similarity=0.188 Sum_probs=223.1
Q ss_pred ccccHHHHHHhhchhHHHHHHHHHHHHHHHHhhhCCCcccccHHH------HHHHHHHHHHHHHHHHHhhhhhhhhcccC
Q psy14930 15 LQEKLSSYLLALRPWSLSASLIPTLLGCALAVKLPIEKGQFSWII------LFVTLLTVISVHCAGNVVNTYYDYVLGID 88 (308)
Q Consensus 15 ~~~~~~~~l~~~Rp~~l~~~~~~~~~g~~la~~~~g~~~~~~~~~------~ll~~l~~~~~~~~~n~~Ndy~D~~~g~D 88 (308)
.++++|.|+|++||++++.++.|+++|...+ | .+++.. .+..++++.+.|+++|.+|||+|+| .|
T Consensus 12 ~~~~~~~~~~l~RP~~~~~~~~~~~~G~~~~----~---~~~~~~~~~~~~ll~~ll~~~l~~~~~n~~NDy~D~d--~D 82 (306)
T TIGR02056 12 ETNIWKIRLQLMKPITWIPLIWGVVCGAAAS----G---NFHWSLEDVAKAALCMLLSGPCLTGYTQTINDFYDRD--ID 82 (306)
T ss_pred chhHHHHHHHHcChHhhHHHHHHHHHHHHHc----C---CCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhHhhhh--hh
Confidence 4456899999999999999999999998852 3 465544 2445678899999999999999985 57
Q ss_pred CCCCCCCCceecccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCc-hhhHHHHHHHHHHHHheeccCCC-CCCccc-chhH
Q psy14930 89 TSRRSDDRTLVDHILSESELVSLGVMLYLVSSAGFILLSYISPA-KMEHLAAVFFCGLSSSFLYSGCL-GLKYTA-LGDV 165 (308)
Q Consensus 89 ~~~~~~~r~l~~g~ls~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~l~~~~~~~~~~~Ys~~p-~lk~~~-lge~ 165 (308)
+ +++++||+++|++|+++++..+..+..+++++++++....+. .+. ...+.+.+++.+++||.|| ++||++ +||+
T Consensus 83 ~-~~~~~Rpi~~G~is~~~a~~~~~~l~~~~~~lg~~l~~~~~~~~~~-~~~l~~~~~~~~~~Yt~gP~~lk~~g~~G~i 160 (306)
T TIGR02056 83 A-INEPYRPIPSGAISEPEVITQIVLLFIAGIAIAFILDLWAGHEFPN-VFVLALFGSFIAFIYSAPPLKLKQNGWLGNF 160 (306)
T ss_pred c-cCCCCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchH-HHHHHHHHHHHHHHHcCChhhhhhcccHHHH
Confidence 3 567899999999999999999999988888888776533321 111 2233344667799999998 999997 7999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHhhcCCCChhhhHhcCCcccceeecchhhHHHHHHHHHHH
Q psy14930 166 LILMIFGPITVLFAFMSQTGRWEWATICYALPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVYYAFLLFIP 245 (308)
Q Consensus 166 ~v~~~~G~l~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~ 245 (308)
.++..++..++.+++ ++++++++..++.+++.++++.++++.||+||+|+|+++|+||+|+++|+|++++++..+...+
T Consensus 161 ~vg~~~~~~~~~~~~-a~~g~~~~~~~l~~~~~~l~~~~i~~~n~~~D~e~D~~~G~~Tlpv~lG~~~a~~~~~~l~~~~ 239 (306)
T TIGR02056 161 ALGASYIALPWWAGH-ALFGELNPDIAVLTLIYSIAGLGIAIVNDFKSVEGDRALGLQSLPVAFGIETAAWICVGAIDIF 239 (306)
T ss_pred HHHHHHHHHHHHHHH-HHhCCCcHHHHHHHHHHHHHHHHHHHHHHccChHHHHHcCCcCcchhcChHHHHHHHHHHHHHH
Confidence 998888877776654 6688999999999999999999999999999999999999999999999999999999888887
Q ss_pred HHHHHHHHH--HHHH-HHHHHHHHHHHHHHHHHHhc-CCccccccHHHHHHHHHHHHHHH
Q psy14930 246 YIVFVVWGM--NHSY-YYLLPLVTLKSAFSIEKQFR-CPDKIHLVPKLTAKLNLYFGFLY 301 (308)
Q Consensus 246 ~~~~~~~~~--~~~~-~~ll~ll~lp~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~ 301 (308)
+...+.+.. ..++ +.++.++++|...++.|.++ ++++.++..+.+++.....|++.
T Consensus 240 ~~~~~~~~~~~~~~~~~~ll~ll~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (306)
T TIGR02056 240 QGLIAAYLLAIGENLYAAALVALIIPQITFQDKYFLKDPLKNDVKYQASAQPFLVLGIFV 299 (306)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhChHhhCcchhhhhhHHHHHHHHH
Confidence 766655432 2333 35778999999999988765 55777888889999988888665
No 11
>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase. This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.
Probab=100.00 E-value=1.6e-41 Score=308.97 Aligned_cols=269 Identities=15% Similarity=0.203 Sum_probs=219.1
Q ss_pred HHHHHhhchhHHHHHHHHHHHHHHHHhhhCCCccc-ccHHHHHH-HHHHHHHHHHHHHHhhhhhhhhcccCCCCCCCCCc
Q psy14930 20 SSYLLALRPWSLSASLIPTLLGCALAVKLPIEKGQ-FSWIILFV-TLLTVISVHCAGNVVNTYYDYVLGIDTSRRSDDRT 97 (308)
Q Consensus 20 ~~~l~~~Rp~~l~~~~~~~~~g~~la~~~~g~~~~-~~~~~~ll-~~l~~~~~~~~~n~~Ndy~D~~~g~D~~~~~~~r~ 97 (308)
|+|+|++||++++.++.|+++|.++|....+ + +++...++ +++++.+.|.++|.+|||+|+| +|+ +++|+||
T Consensus 1 ~~~~~l~rp~t~~~~~~~~~~G~~~a~~~~~---~~~~~~~~ll~~~~~~~l~~~~~n~~Nd~~D~~--~D~-~~~~~Rp 74 (283)
T TIGR01476 1 RAHIELMKPVTWIPPIWACFCGALASGYERG---FPEHWWLMLLGMLMAGPLGTGFSQSINDYFDRD--VDA-INEPQRP 74 (283)
T ss_pred CceeEecCCceehhHHHHHHHHHHhccCCCC---cchhHHHHHHHHHHHHHHHHHHHHHHHhHhhhC--ccc-CCCCCCC
Confidence 4688999999999999999999998833223 4 67776555 6779999999999999999985 674 6679999
Q ss_pred eecccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHheeccCCC-CCCccc-chhHHHHHHHHHHH
Q psy14930 98 LVDHILSESELVSLGVMLYLVSSAGFILLSYISPAKMEHLAAVFFCGLSSSFLYSGCL-GLKYTA-LGDVLILMIFGPIT 175 (308)
Q Consensus 98 l~~g~ls~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~Ys~~p-~lk~~~-lge~~v~~~~G~l~ 175 (308)
+++|++|+++++..+..+..+++++++.+. + + ...++.+.+++.+++||.|| ++||++ +||+.+++.++..+
T Consensus 75 i~~G~is~~~a~~~~~~~~~~~~~l~~~l~---~--~-~~~~l~~~~~~~~~~Ys~~p~~lk~~~~~g~~~vg~~~~~~~ 148 (283)
T TIGR01476 75 IPSGIISLREVRWNWLVLTVAGLLVALVLG---N--W-LIVLFTVVGIVLAVIYSMPPIKLKRNGWLGPPAVGLSYEGLP 148 (283)
T ss_pred CCCCCcCHHHHHHHHHHHHHHHHHHHHHHH---H--H-HHHHHHHHHHHHhheecCchhhhccCCCccHHHHHHHHHHHH
Confidence 999999999999999988888877765431 1 1 11233344566799999998 999998 79999999888877
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHhhcCCCChhhhHhcCCcccceeecchhhHHHHHHHHHHHHHHHHHHHH-
Q psy14930 176 VLFAFMSQTGRWEWATICYALPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVYYAFLLFIPYIVFVVWGM- 254 (308)
Q Consensus 176 ~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~~~~~~~~~~- 254 (308)
...++..+ ++.++..++.+++.++++.++++.||+||+|+||++|+||+|+++|+|++++++..+...+++..+.+..
T Consensus 149 ~~~~~~~~-~~~~~~~~~~~~~~~l~~~~i~~~nd~~D~~~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~~~~~~~~~~~ 227 (283)
T TIGR01476 149 WMAGHAIF-APLTWQSVVVALIYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVMIGVKRAAIVAVTTINVFQAMVIGLLLI 227 (283)
T ss_pred HHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHHhccchhhHHHcCCcCcceEEcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77666554 5688888888999999999999999999999999999999999999999999999988888876654332
Q ss_pred -HHHHH-HHHHHHHHHHHHHHHHHhc-CCccccccHHHHHHHHHHHHHHH
Q psy14930 255 -NHSYY-YLLPLVTLKSAFSIEKQFR-CPDKIHLVPKLTAKLNLYFGFLY 301 (308)
Q Consensus 255 -~~~~~-~ll~ll~lp~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~ 301 (308)
..+.+ .++.++..|..++..|.++ ++++.++..+++++.++.+|++.
T Consensus 228 ~~~~~~~~l~~ll~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (283)
T TIGR01476 228 WGQPWVATIVFLLLVAQIYNQIKLFLRDPQQNYVRYNATANPFYVLGMLA 277 (283)
T ss_pred hCccHHHHHHHHHHHHHHHHHHHHHHhChHHhhHHhhhhcHHHHHHHHHH
Confidence 24443 4667788899888888665 45667788899999999999877
No 12
>PRK13105 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=4.4e-40 Score=296.45 Aligned_cols=265 Identities=15% Similarity=0.169 Sum_probs=208.9
Q ss_pred HHHHHHhhchhHHHHHHHHHHHHHHHHhhhCCCcccccHHHHHHHHHHHHHHHHHHHHh----hhhhhhhcccCCCCCCC
Q psy14930 19 LSSYLLALRPWSLSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHCAGNVV----NTYYDYVLGIDTSRRSD 94 (308)
Q Consensus 19 ~~~~l~~~Rp~~l~~~~~~~~~g~~la~~~~g~~~~~~~~~~ll~~l~~~~~~~~~n~~----Ndy~D~~~g~D~~~~~~ 94 (308)
+|.+++++||++|..+..|+.+|..+| +| ..+| .+ +++.+++|.+.|.. |||+|+++|.|++++.+
T Consensus 1 ~~~~~~~~rP~~wi~~a~pf~~g~~la---~~---~~~~-~~---l~~~l~~~~~~n~am~~~Ndy~D~~~d~dn~r~~g 70 (282)
T PRK13105 1 IRQLLLSSRPISWINTAYPFAAAYLLA---GG---EIDW-LF---VVGTVFFLIPYNLAMYGINDVFDYESDLRNPRKGG 70 (282)
T ss_pred ChhHHHhcccHHHhccHHHHHHHHHHH---CC---CCCh-HH---HHHHHHHHHHHHHHHHhhhhhhhhhcCCCCcccCC
Confidence 368999999999999999999999998 24 4555 33 33445666666665 99999999999765432
Q ss_pred CCceecccCCHHHHHHHHHHHHHHHHH-HHHHHHHhcCchhhHHHHHHHHHHHHheeccCCC-CCCcccchhH--HHHHH
Q psy14930 95 DRTLVDHILSESELVSLGVMLYLVSSA-GFILLSYISPAKMEHLAAVFFCGLSSSFLYSGCL-GLKYTALGDV--LILMI 170 (308)
Q Consensus 95 ~r~l~~g~ls~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~l~~~~~~~~~~~Ys~~p-~lk~~~lge~--~v~~~ 170 (308)
| +|.+|++|+++....+..++++ .++.+....+ + ....+...+++.++.||.+| |+||+|+||. .++..
T Consensus 71 -~---~g~i~~~~~~~~~~~~~~~~~~~~~l~l~~~~~--~-~~~~l~~~ai~~~~~YS~~p~rlk~~gl~d~~t~~~~f 143 (282)
T PRK13105 71 -V---EGAVLDRAMHRTTLWASVVTTVPFLVVLLAVGS--W-ASGLVLAVSVFAVVAYSAPGLRFKERPFLDSLTSSTHF 143 (282)
T ss_pred -C---CCccCHHHHHHHHHHHHHHHHHHHHHHHHHHhh--H-HHHHHHHHHHHHHHHhcCCCccccccchHHHHHHHHHH
Confidence 1 3669999998877777666655 5555544322 1 12223334667899999999 9999999998 66667
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHhhcCCCChhhhHhcCCcccceeecchhhHHHHHHHHHHHHHHHH
Q psy14930 171 FGPITVLFAFMSQTGRWEWATICYALPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVYYAFLLFIPYIVFV 250 (308)
Q Consensus 171 ~G~l~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~~~~~~ 250 (308)
+|+ .+.|.++. ++.+++..++.+.++++++.+++..||+||+|+||++|+||+|+++|+|++.+++..++..++++.+
T Consensus 144 ~~~-~v~G~~~~-~~~~~~~~~l~~~~~~~~~~a~~ii~~irDie~Dr~~G~~Tlpv~lG~~~a~~~~~~l~~~a~~~~~ 221 (282)
T PRK13105 144 VSP-ALYGLVLA-GAPFTAALWAVLAAFFLWGMASHAFGAVQDVVADREAGIASIATVLGARRTVRLAVGLYAAAAVLML 221 (282)
T ss_pred HHH-HHHHHHHh-hccccHHHHHHHHHHHHHHHHHHHHHhCcchHhHHHcCCccchHHhcHHHHHHHHHHHHHHHHHHHH
Confidence 777 66676666 7778888888999999999999999999999999999999999999999999999999999887776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc----CCccccccHHHHHHHHHHHHHHHHHHH
Q psy14930 251 VWGMNHSYYYLLPLVTLKSAFSIEKQFR----CPDKIHLVPKLTAKLNLYFGFLYVVAV 305 (308)
Q Consensus 251 ~~~~~~~~~~ll~ll~lp~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~~~l 305 (308)
... .+. .++.++++|++.+..|.+. ++++.++..+++++.++.+|+++.+..
T Consensus 222 ~~~--~~~-~~l~ll~~p~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~ 277 (282)
T PRK13105 222 ALP--WPG-WLAAVLALPYVVNTARFWSVTDADCERANRGWRRFLWLNYVSGFLVTMLL 277 (282)
T ss_pred HHH--hHH-HHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332 222 4678899999999988755 346788999999999999999998854
No 13
>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed
Probab=100.00 E-value=5.6e-38 Score=288.88 Aligned_cols=274 Identities=18% Similarity=0.240 Sum_probs=212.1
Q ss_pred ccccHHHHHHhhchhHHHHHHHHHHHHHHHHhhhCCCcccccHHH------HHHHHHHHHHHHHHHHHhhhhhhhhcccC
Q psy14930 15 LQEKLSSYLLALRPWSLSASLIPTLLGCALAVKLPIEKGQFSWII------LFVTLLTVISVHCAGNVVNTYYDYVLGID 88 (308)
Q Consensus 15 ~~~~~~~~l~~~Rp~~l~~~~~~~~~g~~la~~~~g~~~~~~~~~------~ll~~l~~~~~~~~~n~~Ndy~D~~~g~D 88 (308)
.+++++.|++++||++++.++.|++.|.+.+ + ..++.. ++..+++..+.|+++|.+|||+|++ .|
T Consensus 23 ~~~~~~~~~~l~RP~~~~~~~~~~~~g~~~~----~---~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~Nd~~D~~--~D 93 (314)
T PRK07566 23 TTSIWKARLQLMKPITWFPPMWAFLCGAVSS----G---AFGWTLENVLKLLAGMLLAGPLLCGTSQTLNDYFDRE--VD 93 (314)
T ss_pred cchHHHHHHHHhCCcchHHHHHHHHHHHHHc----C---CCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhhhccC--cc
Confidence 4567899999999999999999999988754 2 233322 3445677888999999999999985 68
Q ss_pred CCCCCCCCceecccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHheeccCCC-CCCccc-chhHH
Q psy14930 89 TSRRSDDRTLVDHILSESELVSLGVMLYLVSSAGFILLSYISPAKMEHLAAVFFCGLSSSFLYSGCL-GLKYTA-LGDVL 166 (308)
Q Consensus 89 ~~~~~~~r~l~~g~ls~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~Ys~~p-~lk~~~-lge~~ 166 (308)
+ .++++||+++|++|++|++..+..+..+++.++..+ + +. ...+.+.+++.+++||.|| ++||++ +||+.
T Consensus 94 ~-~~~~~Rpl~sG~is~~~a~~~~~~l~~~~~~l~~~l----~--~~-~~~l~l~~~~~~~~Yt~gP~~lK~~~~~g~i~ 165 (314)
T PRK07566 94 A-INEPYRPIPSGAISLRWVLYLIAVLTVLGLAVAYLL----G--PW-VFLAALLGLFLAWIYSAPPLRLKQNGWLGNYA 165 (314)
T ss_pred c-cCCCCCCCCCceeCHHHHHHHHHHHHHHHHHHHHHH----C--hH-HHHHHHHHHHHHHHhcCCccccccccchhhHH
Confidence 4 456899999999999999999988877777655432 2 11 2223334566789999998 999998 69999
Q ss_pred HHHHHHHHHHHHHHHH-hcCCCcHHHHHHHHHHHHHHHHHHhhcCCCChhhhHhcCCcccceeecchhhHHHHHHHHHHH
Q psy14930 167 ILMIFGPITVLFAFMS-QTGRWEWATICYALPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVYYAFLLFIP 245 (308)
Q Consensus 167 v~~~~G~l~~~~~~~~-~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~ 245 (308)
+++.+|..+..++++. +++..++..++.+++.+++..+++..||+||+|+||++|+||+|+++|+|++++++..+...+
T Consensus 166 vg~~~g~~~~~~g~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~d~~D~e~D~~aG~~Tlpv~~G~~~a~~l~~~l~~~~ 245 (314)
T PRK07566 166 VGLSYEGLPWWAGAAAFGAGLPSWPIVILALLYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVVFGEKNAARIACVVIDLF 245 (314)
T ss_pred HHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHcCCcccceeEcHHHHHHHHHHHHHHH
Confidence 9999987776655444 445788888999999999999999999999999999999999999999999999998888888
Q ss_pred HHHHHHHH--HHHHHH-HHHHHHHHHHHHHHHHHhcCCccccccHHHHHHHHHHHHHHHHHHHH
Q psy14930 246 YIVFVVWG--MNHSYY-YLLPLVTLKSAFSIEKQFRCPDKIHLVPKLTAKLNLYFGFLYVVAVT 306 (308)
Q Consensus 246 ~~~~~~~~--~~~~~~-~ll~ll~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 306 (308)
++..+.+. ...+.+ .++.++..|+.....+..+++++.+...+.+.+.++.+++++ .+++
T Consensus 246 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~-~~~~ 308 (314)
T PRK07566 246 QLAVIALLLAWGQPLYAAIVGLLLIPQITLQDRLLRDPLERDVWYNASAQPFYVLGMLV-TALA 308 (314)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhhChhhcChhhhhhhhHHHHHHHHH-HHHH
Confidence 87664432 223343 355677888888877776655666677777877777776655 4444
No 14
>PLN00012 chlorophyll synthetase; Provisional
Probab=100.00 E-value=1.2e-37 Score=290.70 Aligned_cols=274 Identities=18% Similarity=0.189 Sum_probs=213.9
Q ss_pred ccHHHHHHhhchhHHHHHHHHHHHHHHHHhhhCCCcccccHHH------HHHHHHHHHHHHHHHHHhhhhhhhhcccCCC
Q psy14930 17 EKLSSYLLALRPWSLSASLIPTLLGCALAVKLPIEKGQFSWII------LFVTLLTVISVHCAGNVVNTYYDYVLGIDTS 90 (308)
Q Consensus 17 ~~~~~~l~~~Rp~~l~~~~~~~~~g~~la~~~~g~~~~~~~~~------~ll~~l~~~~~~~~~n~~Ndy~D~~~g~D~~ 90 (308)
+++|.|++++||++++..++++++|.+. .| .++|.. .+..+++..+.+.++|.+|||+|+| +|+
T Consensus 83 ~~~k~~l~L~RP~t~~~~~~~v~~G~~~----~g---~~~~~~~~~~~~ll~~ll~~~L~~~~an~iNDy~D~~--iD~- 152 (375)
T PLN00012 83 DIWKIRLQLTKPVTWPPLVWGVLCGAAA----SG---NFHWTLEDVAKSIVCMLMSGPFLTGYTQTINDWYDRE--IDA- 152 (375)
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHHH----cC---CCCchhhhHHHHHHHHHHHHHHHHHHHHHHHCeecHh--hhc-
Confidence 3589999999999999999999999984 23 455543 3566778889999999999999987 684
Q ss_pred CCCCCCceecccCCHHHHHHHHHHHHHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHheeccCCC-CCCcccc-hhHHH
Q psy14930 91 RRSDDRTLVDHILSESELVSLGVMLYLVSSAGFILLSYISP-AKMEHLAAVFFCGLSSSFLYSGCL-GLKYTAL-GDVLI 167 (308)
Q Consensus 91 ~~~~~r~l~~g~ls~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~l~~~~~~~~~~~Ys~~p-~lk~~~l-ge~~v 167 (308)
.++|+||+++|++|+++++..+..+..+++.+++.+..... ..+ ....+.+.+++.+++||.|| ++||+++ |++..
T Consensus 153 ~~~~~Rpi~sG~Is~~~al~~~~~l~~~~l~l~~~L~~~~~~~~~-~~~~l~l~gi~l~~~YS~pPl~lKr~~~~G~v~l 231 (375)
T PLN00012 153 INEPYRPIPSGAISENEVITQIWVLLLGGLGLAYTLDVWAGHDFP-IVFYLALGGSLLSYIYSAPPLKLKQNGWIGNYAL 231 (375)
T ss_pred cCCCCCCcCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccH-HHHHHHHHHHHHhhhhcCCchhhhHhccHhHHHH
Confidence 55689999999999999999887777767666665432211 111 12233344566799999998 8999996 99998
Q ss_pred HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHhhcCCCChhhhHhcCCcccceeecchhhHHHHHHHHHHHHH
Q psy14930 168 LMIFGPITVLFAFMSQTGRWEWATICYALPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVYYAFLLFIPYI 247 (308)
Q Consensus 168 ~~~~G~l~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~~~ 247 (308)
+..+|.+++.+++ +.++++++..++.+++.+++..++++.||++|+|+|+++|+||+||++|+|++++++..+..+..+
T Consensus 232 G~~~~~lp~~~g~-a~~g~~s~~~illal~~~l~~lai~ivnd~~Die~Dr~aG~~TLpV~~G~~~a~~l~~~~l~l~~l 310 (375)
T PLN00012 232 GASYISLPWWAGQ-ALFGTLTPDVVVLTLLYSIAGLGIAIVNDFKSIEGDRALGLQSLPVAFGVETAKWICVGSIDITQL 310 (375)
T ss_pred HHHHHHHHHHHHH-HHcCCCCHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHcCCcccceeechHHHHHHHHHHHHHHHH
Confidence 8888877765554 668899999999999999999999999999999999999999999999999999988765555554
Q ss_pred HHHHHHHH--HHHH-HHHHHHHHHHHHHHHHHhc-CCccccccHHHHHHHHHHHHHHHH
Q psy14930 248 VFVVWGMN--HSYY-YLLPLVTLKSAFSIEKQFR-CPDKIHLVPKLTAKLNLYFGFLYV 302 (308)
Q Consensus 248 ~~~~~~~~--~~~~-~ll~ll~lp~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~ 302 (308)
..+.+... .+.+ .++.++.+|......+.+. ++.+.++..+.+++.++.+|++..
T Consensus 311 ~~~~~l~~~~~~~y~~~~~~l~l~~l~~~~~~~~~~p~~~~~~~~~~a~~~~~~~~l~~ 369 (375)
T PLN00012 311 SVAGYLLAIGKPYYALALLGLIIPQIFFQFKYFLPDPVKNDVKYQASAQPFLVFGLLVT 369 (375)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44433322 2233 3556778898888877654 557778888999999999997763
No 15
>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed
Probab=100.00 E-value=1.7e-34 Score=261.91 Aligned_cols=275 Identities=18% Similarity=0.164 Sum_probs=209.9
Q ss_pred cHHHHHHhhchhHHHHHHHHHHHHHHHHhhhCCCcccccHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCC-CCCCCC
Q psy14930 18 KLSSYLLALRPWSLSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHCAGNVVNTYYDYVLGIDTS-RRSDDR 96 (308)
Q Consensus 18 ~~~~~l~~~Rp~~l~~~~~~~~~g~~la~~~~g~~~~~~~~~~ll~~l~~~~~~~~~n~~Ndy~D~~~g~D~~-~~~~~r 96 (308)
++|+|+|++||+.......|.+.|.++|.. + .+++..+++.+++.++.++++|.+|||+|+| +|+. +|+++|
T Consensus 1 ~~~~~~~l~rp~~~~~~~~~~~~g~~la~~--~---~~~~~~~~l~~~~~~l~~~a~~~~Nd~~D~~--iD~~~~Rt~~R 73 (279)
T PRK12869 1 KIKAYLKLLKPRVIWLLDLAAVAGYFLAAK--H---GVSWLPLIPLLIGGTLASGGSAAFNHGIERD--IDKVMSRTSKR 73 (279)
T ss_pred CHHHHHHHhHHHHHHHHHHHHHHHHHHhcc--C---CCCHHHHHHHHHHHHHHHHHHHHHhchHhcC--CCCCCCCCCCC
Confidence 478999999999999999999999998842 3 5788888888999999999999999999975 8875 567999
Q ss_pred ceecccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHheeccCCCCCCcccchhHHHHHHHHHHHH
Q psy14930 97 TLVDHILSESELVSLGVMLYLVSSAGFILLSYISPAKMEHLAAVFFCGLSSSFLYSGCLGLKYTALGDVLILMIFGPITV 176 (308)
Q Consensus 97 ~l~~g~ls~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~Ys~~p~lk~~~lge~~v~~~~G~l~~ 176 (308)
|+++|++|++|+..++..+.++++.++..+ ..+ .......++.....+.||. ++||++++|..++...|..++
T Consensus 74 Pl~sG~is~~~a~~~~~~~~~~~~~l~~~~--l~~---~~~~~~~~~~~~~~~~Yt~--~lKr~~~~~~~v~~~~g~~~~ 146 (279)
T PRK12869 74 PTPVGLVNRKEALAVGSALSALGTALGFLL--LGP---LTALFIALGWFFYAVVYTI--WLKPRTWLNIVIGGFAGNAAA 146 (279)
T ss_pred CcCCCCcCHHHHHHHHHHHHHHHHHHHHHH--HHH---HHHHHHHHHHHHHHhhhCc--ccccCChHHHHHHHHHHHHHH
Confidence 999999999999999888877777665431 211 1111223444567788995 589999999999999999999
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHHHHhhcCCCChhhhHhcCCcccceeecchhhHHHHHHHHHHHHHHHHHHH-HH
Q psy14930 177 LFAFMSQTGRWEWATICYALPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVYYAFLLFIPYIVFVVWG-MN 255 (308)
Q Consensus 177 ~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~~~~~~~~~-~~ 255 (308)
+++|++++++.++.+++.+++.++|+.++.+.++++|+|+|+++|+||+|+++|+|++++....+..+......... ..
T Consensus 147 l~g~~a~~g~~~~~~~ll~~~~~~w~~~~~~~l~~~d~edd~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~~~~~ 226 (279)
T PRK12869 147 LAGYASGTGSLDLEAVLLSFLIYLWTPGHIWSLALKYREDYRRAGVPMLPAVVGEKTSVRAISISNALMIPYILLLYLYY 226 (279)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHcCCeecceeecHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999887666554443332222 22
Q ss_pred HHHHHH-HH-HHHHHHHHHHHHHhcCCccccccHHHHHHHHHHHHHHHHHHHHhC
Q psy14930 256 HSYYYL-LP-LVTLKSAFSIEKQFRCPDKIHLVPKLTAKLNLYFGFLYVVAVTLA 308 (308)
Q Consensus 256 ~~~~~l-l~-ll~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 308 (308)
.+++++ .. +......+...+..+++++ +..++..|.+.....++.+.+++|
T Consensus 227 ~g~~y~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~f~~s~~~l~~~~~~~~~~ 279 (279)
T PRK12869 227 IGLIGLILVAILSAALMATSIRALLNPTK--EEAWKMFKASSPYLALFLLALIIS 279 (279)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhhCCCh--HHHHHHHHHHHHHHHHHHHHHHhC
Confidence 333333 22 2344555566666665322 223456666666666665666543
No 16
>PRK12887 ubiA tocopherol phytyltransferase; Reviewed
Probab=100.00 E-value=1.2e-34 Score=265.58 Aligned_cols=229 Identities=20% Similarity=0.117 Sum_probs=176.3
Q ss_pred hhhccccHHHHHHhhchhHHHHHHHHHHHHHHHHhhhCCCcccccHHHHHHHHHHHHHHHHHHHH----hhhhhhhhccc
Q psy14930 12 FTMLQEKLSSYLLALRPWSLSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHCAGNV----VNTYYDYVLGI 87 (308)
Q Consensus 12 l~~~~~~~~~~l~~~Rp~~l~~~~~~~~~g~~la~~~~g~~~~~~~~~~ll~~l~~~~~~~~~n~----~Ndy~D~~~g~ 87 (308)
.++.++.+++|+|.+||++...+.+++..+..++....+ ...+.. .+...++.++.+.++|+ +|||+|+| +
T Consensus 6 ~~~~~~~l~~~~~l~Rp~t~igt~l~~~~~~l~a~~~~~--~~~~~~-~~~~~l~~~~~~~~~nv~i~~iNd~~D~~--i 80 (308)
T PRK12887 6 LQPMTSWLYALWKFSRPHTIIGTSLSVLGLYLIAIAASS--NTIALA-NLGLLLGAWIACLCGNVYIVGLNQLTDIE--I 80 (308)
T ss_pred hhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcc--chhhHH-HHHHHHHHHHHHHHHHHHHHHHhhhhhHH--H
Confidence 556677799999999999999999999988877643222 012222 45556666666777777 99999998 6
Q ss_pred CCCCCCCCCceecccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHheeccCCC-CCCcccchh-H
Q psy14930 88 DTSRRSDDRTLVDHILSESELVSLGVMLYLVSSAGFILLSYISPAKMEHLAAVFFCGLSSSFLYSGCL-GLKYTALGD-V 165 (308)
Q Consensus 88 D~~~~~~~r~l~~g~ls~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~Ys~~p-~lk~~~lge-~ 165 (308)
|+ .|+|+||+++|++|+++++.+..++.++++.++.. .+. . ...+.+.+.+++++||.|| |+||+|++| +
T Consensus 81 D~-inkp~rPiasG~ls~~~a~~~~~~~~~lal~la~~----~~~--~-~~~~~~~~~~lg~~Ys~pP~rlKr~~~~~~~ 152 (308)
T PRK12887 81 DR-INKPHLPLAAGEFSRRQGQRIVIITGILALILAAL----LGP--W-LLITVGISLLIGTAYSLPPIRLKRFPLLAAL 152 (308)
T ss_pred Hh-cCCCCCCcCCcccCHHHHHHHHHHHHHHHHHHHHH----HhH--H-HHHHHHHHHHHHHHHcCCchhhcccchhHHH
Confidence 84 57799999999999999999888777766665532 221 1 2233345677899999999 999999877 4
Q ss_pred HHHHHHHHHHHHHHHHH------hcCCCcHHHHHHHHHHHHHHHHHHhhcCCCChhhhHhcCCcccceeecchhhHHHHH
Q psy14930 166 LILMIFGPITVLFAFMS------QTGRWEWATICYALPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVYYA 239 (308)
Q Consensus 166 ~v~~~~G~l~~~~~~~~------~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~l~~ 239 (308)
.++...|.....+.++. +.++++...++.+++.++++.++++.||++|+|+||+.|+||+|+++|+|++.+++.
T Consensus 153 ~i~~~~g~i~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~di~D~egD~~~Gi~Tlav~lG~~~a~~l~~ 232 (308)
T PRK12887 153 CIFTVRGVIVNLGLFLHFQWLLGGSVLIPPTVWLLTLFVLVFTFAIAIFKDIPDMEGDRQYQITTFTLRLGKQAVFKLSC 232 (308)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHHHHHHhccchhhHHHcCCcchhHHHhHHHHHHHHH
Confidence 45555665555554331 233566777888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy14930 240 FLLFIPYIVFVVWG 253 (308)
Q Consensus 240 ~l~~~~~~~~~~~~ 253 (308)
.+..++|+..+...
T Consensus 233 ~ll~~~y~~~i~~~ 246 (308)
T PRK12887 233 WVLTACYLGMIAVG 246 (308)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999998776554
No 17
>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=100.00 E-value=3.5e-34 Score=260.80 Aligned_cols=275 Identities=19% Similarity=0.250 Sum_probs=202.6
Q ss_pred cccHHHHHHhhchhH---HHHHHHHHHHHHHHHhhhCCCcccccHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCC-C
Q psy14930 16 QEKLSSYLLALRPWS---LSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHCAGNVVNTYYDYVLGIDTS-R 91 (308)
Q Consensus 16 ~~~~~~~l~~~Rp~~---l~~~~~~~~~g~~la~~~~g~~~~~~~~~~ll~~l~~~~~~~~~n~~Ndy~D~~~g~D~~-~ 91 (308)
++++++|+|++||+. ...+..|++.|.++|... . .+++..+++++++++++|.++|.+|||+|+| +|++ +
T Consensus 4 ~~~~~~~~~l~R~~kp~~~~l~~~~~~~g~~la~~~-~---~~~~~~~ll~~l~~~l~~~a~~~~Nd~~D~~--iD~~~~ 77 (285)
T PRK12847 4 LMKFLAYFKLMRLHKPIGILLVFFPTLFGLLLASHS-L---LPDISLLVLFIIGSVLMRSAGCIINDIFDRK--IDKHVA 77 (285)
T ss_pred HHHHHHHHHHHCcchHHHHHHHHHHHHHHHHHHhCc-c---CCcHHHHHHHHHHHHHHHHHHHHHHhHHHhh--hccCCC
Confidence 346899999998874 456789999999998642 1 3788888999999999999999999999986 6864 5
Q ss_pred CCCCCceecccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHheeccCCCCCCcccchhHHHHHHH
Q psy14930 92 RSDDRTLVDHILSESELVSLGVMLYLVSSAGFILLSYISPAKMEHLAAVFFCGLSSSFLYSGCLGLKYTALGDVLILMIF 171 (308)
Q Consensus 92 ~~~~r~l~~g~ls~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~Ys~~p~lk~~~lge~~v~~~~ 171 (308)
|+++||+++|++|++|+..++..+.++++.+.. ..+. . ...+.+.+.+..+.||..|| +++++++..++.+
T Consensus 78 Rt~~Rpl~sG~is~~~a~~~~~~l~~~~~~l~~----~~~~--~-~~~~~~~~~~~~~~Y~~~Kr--~~~~~~~~~g~~~ 148 (285)
T PRK12847 78 RTKNRPLASGALSVKQALILLFILLLIALVILL----LLNK--T-TIYLSFIAVILIVLYPLMKR--FFYWPQLFLGFTF 148 (285)
T ss_pred cccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHH----HHhH--H-HHHHHHHHHHHHHhcccccc--CCcccHHHHHHHH
Confidence 678999999999999999988887766654432 2221 1 12223344556788985322 4468999988888
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHhhcCCCChhhhHhcCCcccceeecchhhHHHHHHHHHHHHHHHHH
Q psy14930 172 GPITVLFAFMSQTGRWEWATICYALPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVYYAFLLFIPYIVFVV 251 (308)
Q Consensus 172 G~l~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~~~~~~~ 251 (308)
+. .++++|.+++++.++++++.+++.++|+.+++.+++++|+|+|+++|+||+|+++|+|++.+.+.......++..+.
T Consensus 149 ~~-~~l~~~~a~~g~~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tl~v~~G~~~a~~~~~~~~~~~~~~~~~ 227 (285)
T PRK12847 149 NM-GILMAFAAVQNQLDIEAILLYIGCIFWTIGYDTIYAYQDKKDDLKIGVKSTAIYFGNKTRKYILRLYIISLILWLIL 227 (285)
T ss_pred HH-HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHcCCchhHHHhccccHHHHHHHHHHHHHHHHHH
Confidence 75 55677888999999999999999999999999999999999999999999999999999999888776666655443
Q ss_pred HHH-H-HHHHHHHHHHHHHHHHHHHHHhcCCccccccHHHHHHHHHHHHHHHHHHHHhC
Q psy14930 252 WGM-N-HSYYYLLPLVTLKSAFSIEKQFRCPDKIHLVPKLTAKLNLYFGFLYVVAVTLA 308 (308)
Q Consensus 252 ~~~-~-~~~~~ll~ll~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 308 (308)
... . .+.+++...+..-......+..+. ++.++ -.+..+.+...+.++.++++++
T Consensus 228 ~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~-~~~~~-~~~~f~~~~~~~~l~~~~~~~~ 284 (285)
T PRK12847 228 GIISSLHNIFYLAILAAAGIFYYQYKLLDF-DNPAN-CMYAFKANHYVGLLLFLGAVLG 284 (285)
T ss_pred HHHhcCcHHHHHHHHHHHHHHHHHHHHhCC-CCHHH-HHHHHHHhHHHHHHHHHHHHhC
Confidence 322 2 234443333333222222333332 33333 3345788888888888887753
No 18
>PRK12392 bacteriochlorophyll c synthase; Provisional
Probab=100.00 E-value=5e-34 Score=263.03 Aligned_cols=260 Identities=18% Similarity=0.206 Sum_probs=189.0
Q ss_pred hccccHHHHHHhhchhHHHHHHHHHHHHHHHHhhhCCCcccccHHHH--HHHHHHHHHHHHHHHHhhhhhhhhcccCCCC
Q psy14930 14 MLQEKLSSYLLALRPWSLSASLIPTLLGCALAVKLPIEKGQFSWIIL--FVTLLTVISVHCAGNVVNTYYDYVLGIDTSR 91 (308)
Q Consensus 14 ~~~~~~~~~l~~~Rp~~l~~~~~~~~~g~~la~~~~g~~~~~~~~~~--ll~~l~~~~~~~~~n~~Ndy~D~~~g~D~~~ 91 (308)
+.++++|+|+|++||++++ ...|+.+|..+|.. +..+..+...+ ...++...+...++|.+|||+|++ .|+ .
T Consensus 7 ~~~~~~k~~l~L~kP~t~l-~~~p~~~g~~lA~g--~~~~~~~~~~l~l~~~~~~~~L~~~a~~~iND~~D~~--~D~-~ 80 (331)
T PRK12392 7 GFVDKIRAHLELLDPVTWI-SVFPCLAGGVMASG--AMQPTLHDYLLLLALFLMYGPLGTGFSQSVNDYFDLE--LDR-V 80 (331)
T ss_pred chhHHHHHHHHHHCHHHHH-HHHHHHHHHHHHcC--CCCCChhHHHHHHHHHHHHHHHHHHHHhHHhcceeec--ccc-c
Confidence 3566799999999999887 88899999998752 11012222221 112333344456789999999997 574 5
Q ss_pred CCCCCceecccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCc-hhhHHHHHHHHHHHHheeccCCC-CCCcccc-hhHHHH
Q psy14930 92 RSDDRTLVDHILSESELVSLGVMLYLVSSAGFILLSYISPA-KMEHLAAVFFCGLSSSFLYSGCL-GLKYTAL-GDVLIL 168 (308)
Q Consensus 92 ~~~~r~l~~g~ls~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~l~~~~~~~~~~~Ys~~p-~lk~~~l-ge~~v~ 168 (308)
++|+||+++|++|++|++..+..+..+++.+++++....+. ......+..+.++++++.||.|| ++||+++ |++.++
T Consensus 81 n~rtRpl~~G~is~~~al~~~~~l~~la~~lg~~L~~~~~~~~~~~il~~~~~~l~l~~~YS~~P~~lKr~~~~g~~~vG 160 (331)
T PRK12392 81 NEPTRPIPSGRLSEKEALWNSIIVLLLAIGLGVWLGLHIGGERGMVIISSILAGLFVAYIYSAPPLKLKKNILTSAPAVG 160 (331)
T ss_pred CCCCCCCCcCCcCHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHhhhhcCCchhhhccchhHHHHHH
Confidence 56779999999999999999999988888888776544321 00111122234567899999988 8999985 999999
Q ss_pred HHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHhhcCCCChhhhHhcCCcccceeecchhhHHHHHHHHHHHHHH
Q psy14930 169 MIFGPITVLFAFMSQTGRWEWATICYALPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVYYAFLLFIPYIV 248 (308)
Q Consensus 169 ~~~G~l~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~~~~ 248 (308)
+.+|..+... +.+..+++++..++++.+.++++.+.++.||++|+|+|++.|+||+|+++|+|++.++......+..+.
T Consensus 161 l~~~~~~~~~-~~a~~g~~~~~~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~kTlpV~~G~~~a~~i~~~~~~~~~~~ 239 (331)
T PRK12392 161 FSYGFITFLS-ANALFSDIRPEVVWLAGLNFFMAIALIIMNDFKSVEGDKEGGLKSLTVMIGAKNTFLVSFIIIDLVFAV 239 (331)
T ss_pred HHHHHHHHHH-HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcccchhhHHHcCCeeeEeEEcHhhHHHHHHHHHHHHHHH
Confidence 9998766544 445667888888888888999999999999999999999999999999999999998877666555555
Q ss_pred HHHHHH--HHHH-HHHHHHHHHHHHHHHHHHhcCC
Q psy14930 249 FVVWGM--NHSY-YYLLPLVTLKSAFSIEKQFRCP 280 (308)
Q Consensus 249 ~~~~~~--~~~~-~~ll~ll~lp~~~~~~~~~~~~ 280 (308)
++.... ..+. ++...++..+..+.+.+..|+|
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~l~r~p 274 (331)
T PRK12392 240 FAWLAWSWGFTVLMYFILVGLVLNIVIQIQLYRDP 274 (331)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhCh
Confidence 543332 2333 3344445566666666666654
No 19
>PRK04375 protoheme IX farnesyltransferase; Provisional
Probab=100.00 E-value=2.6e-33 Score=256.12 Aligned_cols=218 Identities=21% Similarity=0.235 Sum_probs=178.5
Q ss_pred ccccHHHHHHhhchhHHHHHHHHHHHHHHHHhhhCCCcccccHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCC-CCC
Q psy14930 15 LQEKLSSYLLALRPWSLSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHCAGNVVNTYYDYVLGIDTS-RRS 93 (308)
Q Consensus 15 ~~~~~~~~l~~~Rp~~l~~~~~~~~~g~~la~~~~g~~~~~~~~~~ll~~l~~~~~~~~~n~~Ndy~D~~~g~D~~-~~~ 93 (308)
.++++|+|+|++||+.......|+++|.++|.. + .+|+..++++++++++.++++|.+|||+|+| +|+. +|+
T Consensus 6 ~~~~~~~y~~L~rp~~~~~~~~~~~~G~~la~~--~---~~~~~~~~l~~l~~~l~~aa~~~iNd~~D~~--iD~~~~Rt 78 (296)
T PRK04375 6 SRATLKDYLALTKPRVISLNLFTALGGMLLAPP--G---VPPLLLLLLTLLGIALVAGAAGALNNYIDRD--IDAKMERT 78 (296)
T ss_pred hhhhHHHHHHHhHHHHHHHHHHHHHHHHHHhcC--C---CCCHHHHHHHHHHHHHHHHHHHHHHhHHhhc--cCCCCCcc
Confidence 456799999999999999999999999999853 3 5788888889999999999999999999975 7875 567
Q ss_pred CCCceecccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHheeccCCCCCCcccchhHHHHHHHHH
Q psy14930 94 DDRTLVDHILSESELVSLGVMLYLVSSAGFILLSYISPAKMEHLAAVFFCGLSSSFLYSGCLGLKYTALGDVLILMIFGP 173 (308)
Q Consensus 94 ~~r~l~~g~ls~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~Ys~~p~lk~~~lge~~v~~~~G~ 173 (308)
++||+++|++|++|++.++..+..++++++..+. .. ....+..++.....+.||. ++||++.|+..++...|.
T Consensus 79 ~~Rpl~sG~is~~~a~~~~~~l~~~g~~l~~~l~--~~---~~~~l~~~~~~~~~~~Ys~--~lKr~~~~~~~v~~~~g~ 151 (296)
T PRK04375 79 KNRPLVTGRISPREALIFGLVLGVLGFLLLGLFV--NP---LAAWLTLAGIFFYVVVYTL--WLKRRTPQNIVIGGAAGA 151 (296)
T ss_pred CCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHH--hH---HHHHHHHHHHHHHHHHhcc--chhcCCccchHHHHHHHH
Confidence 9999999999999999998888777666543321 11 0111112222224567885 599999999999888888
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHhhcCCCChhhhHhcCCcccceeecchhhHHHHHHHHHHHH
Q psy14930 174 ITVLFAFMSQTGRWEWATICYALPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVYYAFLLFIPY 246 (308)
Q Consensus 174 l~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~~ 246 (308)
.+++++|+++++++++.+++++++..+|+.+.+..++++|+|+|+++|.||+|+++|+|++++..........
T Consensus 152 ~~~l~g~~a~~g~~~~~~~~l~~~~~lw~~~~~~~~~~~d~~D~~~~G~~tlpv~~G~~~~~~~~~~~~~~~~ 224 (296)
T PRK04375 152 MPPLIGWAAVTGSLSWEALILFLIIFLWTPPHFWALAIFRKDDYAAAGIPMLPVVKGIRVTKRQILLYTVLLV 224 (296)
T ss_pred hHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHcCCCccceeeCHHHHHHHHHHHHHHHH
Confidence 8888889999999999999999999999999999999999999999999999999999998886655444333
No 20
>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase. A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.
Probab=100.00 E-value=2.5e-33 Score=254.96 Aligned_cols=271 Identities=16% Similarity=0.143 Sum_probs=199.1
Q ss_pred cHHHHHHhhchhHHHHHHHHHHHHHHHHhhhCCCcccccHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCC-CCCCCC
Q psy14930 18 KLSSYLLALRPWSLSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHCAGNVVNTYYDYVLGIDTS-RRSDDR 96 (308)
Q Consensus 18 ~~~~~l~~~Rp~~l~~~~~~~~~g~~la~~~~g~~~~~~~~~~ll~~l~~~~~~~~~n~~Ndy~D~~~g~D~~-~~~~~r 96 (308)
++|+|+|++||+....+......|..+|.. + ..++..++++++++++++.++|.+|||+|+| .|+. +|+++|
T Consensus 1 ~~~~~~~L~r~~~~~~~~~~~~~g~~la~~--~---~~~~~~~~l~~l~~~l~~~a~~~~Nd~~D~~--~D~~~~Rt~~R 73 (282)
T TIGR01475 1 KFKDILELIKFEHTVFALPFAYAGALLAAK--G---LPGLKTLILILIAAVSARTAAMAFNRIIDRA--IDARNPRTKNR 73 (282)
T ss_pred CHHHHHHHHccccHHHHHHHHHHHHHHhcC--C---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHc--ccCCCCccCCC
Confidence 478999999999988887777778888753 3 5788888999999999999999999999987 6764 568999
Q ss_pred ceecccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHheeccCCCCCCcc-cchhHHHHHHHHHHH
Q psy14930 97 TLVDHILSESELVSLGVMLYLVSSAGFILLSYISPAKMEHLAAVFFCGLSSSFLYSGCLGLKYT-ALGDVLILMIFGPIT 175 (308)
Q Consensus 97 ~l~~g~ls~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~Ys~~p~lk~~-~lge~~v~~~~G~l~ 175 (308)
|+++|++|+++++.++.++.+.+.+.+..+ +. . ...+...+....+.|+. +|++ +++++..++.+|. +
T Consensus 74 Pl~sG~is~~~a~~~~~~~~~~~~~~~~~l----~~--~-~~~l~~~~~~~~~~Y~~---~Kr~~~~~~~~~g~~~~~-~ 142 (282)
T TIGR01475 74 PLVSGLISKKEARTMIILSLALFLSASYFL----NP--L-AFILSPLVLLVLIIYPY---TKRFTFLCHYVLGSTYGL-A 142 (282)
T ss_pred CCCCCCcCHHHHHHHHHHHHHHHHHHHHHH----hH--H-HHHHHHHHHHHHHHHhh---HhccccccHHHHHHHHHH-H
Confidence 999999999999998876654444333221 11 1 11122223445678874 5655 5899998888875 5
Q ss_pred HHHHHHHhcCCCc--HHHHHHHHHHHHHHHHHHhhcCCCChhhhHhcCCcccceeecchhhHHHHHHHHHHHHHHHHHHH
Q psy14930 176 VLFAFMSQTGRWE--WATICYALPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVYYAFLLFIPYIVFVVWG 253 (308)
Q Consensus 176 ~~~~~~~~~~~~~--~~~~l~~l~~~l~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~~~~~~~~~ 253 (308)
+++++.+++++.+ ..+++++++..+|+.+++++|++||+|+|+++|+||+|+++|+|++++.+..+..+++.......
T Consensus 143 ~~~g~~a~~g~~~~~~~~~ll~~~~~~w~~~~~~i~~~~D~e~D~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~~ 222 (282)
T TIGR01475 143 PLAGWVAVIGTISFFLVAWLLGIGVGFWIAGFDLIYAIQDYEFDRKNGLHSIPARFGIKAALKIASLSHVITFILLLLVG 222 (282)
T ss_pred HHHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHcCCCchHHHhchHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666888888888 77888999999999999999999999999999999999999999999988887777776554433
Q ss_pred H--HHHH-HHHHHHHHHHHHHHHHHHhcCCccccccHHHHHHHHHHHHHHHHHHHHh
Q psy14930 254 M--NHSY-YYLLPLVTLKSAFSIEKQFRCPDKIHLVPKLTAKLNLYFGFLYVVAVTL 307 (308)
Q Consensus 254 ~--~~~~-~~ll~ll~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 307 (308)
. ..+. +....++.........+..+. ++.+...+.....+...++++.+|+++
T Consensus 223 ~~~~~g~~y~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~ff~~~~~l~~~~~~g~~~ 278 (282)
T TIGR01475 223 FYVGNGYIALLALILIGLILAYEHYIVDP-GDQSKIQRAFFYANGFLSITFLIGVII 278 (282)
T ss_pred HHhhCcHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 2 1233 322333333444445554443 333333344577788888888888764
No 21
>PRK12871 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=5.6e-33 Score=253.07 Aligned_cols=280 Identities=19% Similarity=0.157 Sum_probs=195.0
Q ss_pred cccHHHHHHhhchhHHHHHHHHHHHHHHHHhhhCCCcccccHHHHHH-HHHHHHHHHHHHHHhhhhhhhhccc-CCCCC-
Q psy14930 16 QEKLSSYLLALRPWSLSASLIPTLLGCALAVKLPIEKGQFSWIILFV-TLLTVISVHCAGNVVNTYYDYVLGI-DTSRR- 92 (308)
Q Consensus 16 ~~~~~~~l~~~Rp~~l~~~~~~~~~g~~la~~~~g~~~~~~~~~~ll-~~l~~~~~~~~~n~~Ndy~D~~~g~-D~~~~- 92 (308)
++++|+|++++||++++.+..++..|.++|....| .+++...++ ++++.+.. .++|.+|||+|+|.|. |.+++
T Consensus 2 ~~~~~~~~~l~Rp~~l~~~~~~~~~g~~lA~~~~g---~~~~~~~~l~~l~~~l~~-~ag~~iND~~D~~~D~~~v~rtm 77 (297)
T PRK12871 2 KETLKAYIDLTRAHFLPAWPLLFCSGLVLAFANYG---GFSWELTIKAALIGLFGF-EAGFVLNDYVDRKRDRLDVENTL 77 (297)
T ss_pred cchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHccC---CCCHHHHHHHHHHHHHHH-HHHHHHhhHHHHhcCcchHhhhh
Confidence 35689999999999999999999999999864335 678876664 45555555 4568999999999764 32222
Q ss_pred ------CCCCceecccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHheeccCCCCCCcccchhHH
Q psy14930 93 ------SDDRTLVDHILSESELVSLGVMLYLVSSAGFILLSYISPAKMEHLAAVFFCGLSSSFLYSGCLGLKYTALGDVL 166 (308)
Q Consensus 93 ------~~~r~l~~g~ls~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~Ys~~p~lk~~~lge~~ 166 (308)
+++||+++|++|++|++.++..+..+++.++..+..... + ....+.+.+.+.++.|+.+||..+.|.+++.
T Consensus 78 ~r~~~P~~~Rpl~sG~is~~~a~~~~i~l~~i~~~l~~~l~~~~~--~-~~~~l~~~~~~~~~~Y~~~kr~~~~p~~~l~ 154 (297)
T PRK12871 78 TRYWRPFKERPIPSGKLSSKNAFALFILLAAVTSALILTLPYPNS--L-YVFVIMLYSYGIEAFYQVKKRNQKYPVAQLL 154 (297)
T ss_pred hccccCCCCCccCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH--H-HHHHHHHHHHHHHHHHhcccccccccHHHHH
Confidence 268999999999999999999888887776654433221 1 1112223345678889865544556777755
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHhhcCCCChhhhHhcCCcccceeecchhhHHHHHHHHHHHH
Q psy14930 167 ILMIFGPITVLFAFMSQTGRWEWATICYALPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVYYAFLLFIPY 246 (308)
Q Consensus 167 v~~~~G~l~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~~ 246 (308)
-++.++. +++.++ +++++.+...++++.+.++|+.+.+.+||++|+|+|+++|+||+|+++|++++++....+..+..
T Consensus 155 G~~~~~~-~~~~g~-~~~g~~~~~~~ll~~~~~~w~~~~~~~~a~~D~e~D~~~G~~Tlpv~~G~~~t~~~i~~~~~l~~ 232 (297)
T PRK12871 155 GRTDFTL-FPAAGY-LCYGQPDMTALLYMVFFYPWTMAHLGLNDFIDLENDRARGMKSIAVLYGMKGTMYWVTGFTALHF 232 (297)
T ss_pred HHHHHHH-HHHHHH-HHhCCCcHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHcCCeeeeeeechHHHHHHHHHHHHHHH
Confidence 4455555 344444 56888998889999999999999999999999999999999999999999999987776666655
Q ss_pred HHHHHHHHHHH-H-HHHHHHHHHHHHHHHHHHhcCCccccccHHHHHHHHHHHHHHHHHHHH
Q psy14930 247 IVFVVWGMNHS-Y-YYLLPLVTLKSAFSIEKQFRCPDKIHLVPKLTAKLNLYFGFLYVVAVT 306 (308)
Q Consensus 247 ~~~~~~~~~~~-~-~~ll~ll~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 306 (308)
+..+......+ . +..+.+...|+...+.+..+++ +.+.-.+ ..+......+.+...++
T Consensus 233 l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~f~~~~~~~~~~~~~~~ 292 (297)
T PRK12871 233 LAAIFFLRELGPIALYGFLAGFVLLAGANLYLWKEK-SQDAGMK-ILPLYHASLVIYAVSII 292 (297)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCC-CHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 44443333332 2 2333355667777777777653 3333332 34555555555555554
No 22
>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=100.00 E-value=5e-33 Score=255.45 Aligned_cols=278 Identities=20% Similarity=0.136 Sum_probs=199.6
Q ss_pred ccccHHHHHHhh---chhHHHHHHHHHHHHHHHHhhhCCCcccccHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCC-
Q psy14930 15 LQEKLSSYLLAL---RPWSLSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHCAGNVVNTYYDYVLGIDTS- 90 (308)
Q Consensus 15 ~~~~~~~~l~~~---Rp~~l~~~~~~~~~g~~la~~~~g~~~~~~~~~~ll~~l~~~~~~~~~n~~Ndy~D~~~g~D~~- 90 (308)
.+.++++|+|++ ||+.....+.|++.|.++|....+..+..++..+++++++++++|+++|.+|||+|++ +|+.
T Consensus 26 ~~~~~~~y~~L~R~~kP~~~~l~~~p~~~G~~lA~~~~~~~~~~~~~~~~l~~l~~~l~~~a~~~~Nd~~Dr~--iD~~~ 103 (314)
T PRK12878 26 LPPWLRPYAQLARWDRPIGWWLLLWPCWWSAALAAGAAADLGLLLLWHLFLFFVGAIAMRGAGCTYNDIVDRD--IDAKV 103 (314)
T ss_pred cchhHHHHHHHHccccchhhHHHHHHHHHHHHHhcccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cccCC
Confidence 667899999999 8999999999999999999653110114677788889999999999999999999965 8864
Q ss_pred CCCCCCceecccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHheeccCCCCCCc-ccchhHHHHH
Q psy14930 91 RRSDDRTLVDHILSESELVSLGVMLYLVSSAGFILLSYISPAKMEHLAAVFFCGLSSSFLYSGCLGLKY-TALGDVLILM 169 (308)
Q Consensus 91 ~~~~~r~l~~g~ls~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~Ys~~p~lk~-~~lge~~v~~ 169 (308)
+|+++||+++|++|++|+...+..+..+++.+ .+..+ +. ...+.+.+++..+.||. .|| +++++...++
T Consensus 104 ~Rt~~RPl~sG~is~~~a~~~~~~~~~~g~~l----~~~~~--~~-~~~l~~~~~~~~~~Y~~---~KR~t~~~~~~~Gl 173 (314)
T PRK12878 104 ARTRSRPLPSGQVSRKQAKVFMVLQALVGLAV----LLQFN--WF-AIALGIASLAIVAAYPF---MKRITWWPQFFLGL 173 (314)
T ss_pred CCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHH----HHHHh--HH-HHHHHHHHHHHHHHHHH---HHhcCCcchHHHHH
Confidence 67889999999999999987776665544433 22222 11 22333445566888985 343 3456665566
Q ss_pred HHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHhhcCCCChhhhHhcCCcccceeecchhhHHHHHHHHHHHHHHH
Q psy14930 170 IFGPITVLFAFMSQTGRWEWATICYALPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVYYAFLLFIPYIVF 249 (308)
Q Consensus 170 ~~G~l~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~~~~~ 249 (308)
.++..+ +.+|++++|++++.++++.+...+|......+++++|+|+|+++|+||+|+++|++++++.+........+..
T Consensus 174 ~~~~~~-l~g~~a~~g~~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~aGi~slpv~~G~~~~~~~~~~~~~~~~~~~ 252 (314)
T PRK12878 174 AFSWGA-LMGWAAHFGSLSLAAVLLYAGSIAWTIGYDTIYAHQDKEDDALIGVKSTARLFGDHTKTWLVLFYGLAVLLMG 252 (314)
T ss_pred HHHHHH-HHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHcCCcccchHhchhhHHHHHHHHHHHHHHHH
Confidence 555434 3458899999999888888889999999999999999999999999999999999999998855554444333
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHhc-CCccccccHHHHHHHHHHHHHHHHHHHHh
Q psy14930 250 VVWGM-NHSYYYLLPLVTLKSAFSIEKQFR-CPDKIHLVPKLTAKLNLYFGFLYVVAVTL 307 (308)
Q Consensus 250 ~~~~~-~~~~~~ll~ll~lp~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 307 (308)
+.... ..+++++++++..+... ..+..+ ++++.+ ..++..+.+...+.++.+++++
T Consensus 253 l~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~-~~~~~F~~n~~~~~ll~~~l~~ 310 (314)
T PRK12878 253 LAFWLAGVPLLALLGLLAAAAHL-AWQIARLDIDDPD-QCLRLFKSNRDAGLLIFLGLVV 310 (314)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHH-HHHHHHcccCChH-HHHHHHHHhHHHHHHHHHHHHH
Confidence 32222 33455555555554442 222222 122222 2466888889899888888765
No 23
>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed
Probab=100.00 E-value=4.2e-33 Score=253.06 Aligned_cols=264 Identities=18% Similarity=0.250 Sum_probs=192.5
Q ss_pred ccHHHHHHhhchhHHHHHHHHHHHHHHHHhhhCCCcccccHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCCCC
Q psy14930 17 EKLSSYLLALRPWSLSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHCAGNVVNTYYDYVLGIDTSRRSDDR 96 (308)
Q Consensus 17 ~~~~~~l~~~Rp~~l~~~~~~~~~g~~la~~~~g~~~~~~~~~~ll~~l~~~~~~~~~n~~Ndy~D~~~g~D~~~~~~~r 96 (308)
|++|+|+|++||+....+..|...|..++.. + ..++..++++++++++.+.++|.+|||+|+| +|+ .++|+|
T Consensus 1 m~~~~~~~l~Rp~~~~~~~~~~~~g~~la~~--~---~~~~~~~~l~~l~~~l~~~~~~~iNd~~D~~--iD~-~~~~~R 72 (279)
T PRK09573 1 MSIKAYFELIRPKNCIGASIGAIIGYLIASN--F---KIDLKGIILAALVVFLVCAGGNVINDIYDIE--IDK-INKPER 72 (279)
T ss_pred CCHHHHHHHHhHhHHHHHHHHHHHHHHHHcc--C---CcchHHHHHHHHHHHHHHHHHHHHHhhcccc--ccc-ccCCCC
Confidence 3589999999999999999999999998853 3 4578888899999999999999999999997 685 445899
Q ss_pred ceecccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHheeccCCCCCCccc-chhHHHHHHHHHHH
Q psy14930 97 TLVDHILSESELVSLGVMLYLVSSAGFILLSYISPAKMEHLAAVFFCGLSSSFLYSGCLGLKYTA-LGDVLILMIFGPIT 175 (308)
Q Consensus 97 ~l~~g~ls~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~Ys~~p~lk~~~-lge~~v~~~~G~l~ 175 (308)
|+++|++|++|++.++..+..+++.++..+ +. . ...+.+.+....+.||. ++|+++ +||+.++..+|..+
T Consensus 73 pl~sG~is~~~a~~~~~~l~~~~~~l~~~l---~~---~-~~~l~~~~~~~~~~Ys~--~lKr~~~~~~~~vg~~~G~~~ 143 (279)
T PRK09573 73 PIPSGRISLKEAKIFSITLFIVGLILSIFI---NI---Y-AFLIALLNSILLYLYAK--DLKKTGLIGNLIVAYLTGLSF 143 (279)
T ss_pred CcCCCccCHHHHHHHHHHHHHHHHHHHHHH---hH---H-HHHHHHHHHHHHHHHHH--HHhcCCcHHHHHHHHHHHHHH
Confidence 999999999999999998888777665432 11 1 12223334556788985 478777 59999999999887
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHhhcCCCChhhhHhcCCcccceeecchhhHHHHHHHHHHHHHHHHHHH-H
Q psy14930 176 VLFAFMSQTGRWEWATICYALPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVYYAFLLFIPYIVFVVWG-M 254 (308)
Q Consensus 176 ~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~~~~~~~~~-~ 254 (308)
+.+..+.++ +...+++.....+|+.+.+..||.+|+|+|+++|+||+|+++|+|++.++................ .
T Consensus 144 ~~g~~~~~~---~~~~~~l~~~~f~~~~~~~~~~~~~D~~~D~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~~~~ 220 (279)
T PRK09573 144 IFGGLAVFN---VLRIIILFLCAFFSTWSREIVKDIEDIEGDLKENVITLPIKYGIKKSWYIAKILLILAIVLSPLPYFL 220 (279)
T ss_pred HHHHHHHcc---chHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHCCCccccHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 766655543 234555566677888899999999999999999999999999999999988766655554443222 1
Q ss_pred H-HHHHHHH--HHHHHHHHHHHHHHhcCCc-cccccHHHHHHHHHHHHHH
Q psy14930 255 N-HSYYYLL--PLVTLKSAFSIEKQFRCPD-KIHLVPKLTAKLNLYFGFL 300 (308)
Q Consensus 255 ~-~~~~~ll--~ll~lp~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l 300 (308)
. .+.+++. .....++.+...+..++++ +.....++..|..+..|++
T Consensus 221 ~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~m~~g~~ 270 (279)
T PRK09573 221 GIFGIYYLIVVIICDILFIIAMLILLKNPSIEGASKASKYLKIIMILGLI 270 (279)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 1 2333332 2334566666666666532 1222333455666666554
No 24
>PRK12888 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=1.2e-32 Score=249.67 Aligned_cols=274 Identities=16% Similarity=0.210 Sum_probs=196.1
Q ss_pred cHHHHHHhhchhHHHHHHHHHHHHHHHHhhh-CCCcccccHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCC-CCCCC
Q psy14930 18 KLSSYLLALRPWSLSASLIPTLLGCALAVKL-PIEKGQFSWIILFVTLLTVISVHCAGNVVNTYYDYVLGIDTS-RRSDD 95 (308)
Q Consensus 18 ~~~~~l~~~Rp~~l~~~~~~~~~g~~la~~~-~g~~~~~~~~~~ll~~l~~~~~~~~~n~~Ndy~D~~~g~D~~-~~~~~ 95 (308)
|+|+++|.+||+.-..+..-.+.|...+... .| .+++..+++.++++++++.++|.+|||+|++ +|+. +|+++
T Consensus 1 ~~~~~~~l~r~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~~~~l~~l~~~l~~~a~~~~Nd~~Dr~--iD~~~~RT~~ 75 (284)
T PRK12888 1 RVRAFLRLVAIEHSVFALPFAYIAALTAMFASDG---SVHWADLLLVTVAMVGARTFAMAANRIIDRE--IDARNPRTAG 75 (284)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHHHHHHHHHHHhHHhhC--CCCCCCCCCC
Confidence 3789999999987666554445555555422 24 6788889999999999999999999999975 8875 57899
Q ss_pred CceecccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHheeccCCCCCCcccchhHHHHHHHHHHH
Q psy14930 96 RTLVDHILSESELVSLGVMLYLVSSAGFILLSYISPAKMEHLAAVFFCGLSSSFLYSGCLGLKYTALGDVLILMIFGPIT 175 (308)
Q Consensus 96 r~l~~g~ls~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~Ys~~p~lk~~~lge~~v~~~~G~l~ 175 (308)
||+++|++|++|++.++..+++++..++..+ .+ . ...+...++...+.|+.. .++++++++..++.++. +
T Consensus 76 RPL~sG~is~~~a~~~~~~~~~~~l~l~~~l---~~--~--~~~l~~~~~~~~~~Y~~~--Kr~t~~~~~~lg~~~~~-~ 145 (284)
T PRK12888 76 RELVTGAVSVRTAWTGALVALAVFLGAAALL---NP--L--CLALAPLAVAPLVVYPYA--KRFTNFPHAILGLAQAV-G 145 (284)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH---hH--H--HHHHHHHHHHHHHHHHHh--hcccchhhHHHHHHHHH-H
Confidence 9999999999999988776654433332211 11 1 111222233345567531 23446789988888665 4
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHhhcCCCChhhhHhcCCcccceeecchhhHHHHHHHHHHHHHHHHHHHH-
Q psy14930 176 VLFAFMSQTGRWEWATICYALPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVYYAFLLFIPYIVFVVWGM- 254 (308)
Q Consensus 176 ~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~~~~~~~~~~- 254 (308)
++++|++++++.++++++.+++.++|+.+.+++|++||+|+|+++|+||+|+++|+|++.+++..+....++.......
T Consensus 146 ~l~g~~a~~g~~~~~~~ll~~~~~~w~~~~~~i~a~~D~e~D~~~Gv~sl~v~~G~~~a~~~~~~~~~~~~~ll~~~~~~ 225 (284)
T PRK12888 146 PVGAWIAVTGTWSWPAVLLGLAVGLWIGGFDLIYACQDAEVDRRIGVRSVPARFGVRAALWASRVAHVVTFALFVWFGLA 225 (284)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHCCCcCcchhhCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 5577889999999999999999999999999999999999999999999999999999998887777666655544332
Q ss_pred -HHHH-HHHHHHHHHHHHHHHHHHhcCCccccccHHHHHHHHHHHHHHHHHHHHh
Q psy14930 255 -NHSY-YYLLPLVTLKSAFSIEKQFRCPDKIHLVPKLTAKLNLYFGFLYVVAVTL 307 (308)
Q Consensus 255 -~~~~-~~ll~ll~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 307 (308)
..+. +.....++......+.+..+ +++..+..+...+.|...|+++.+++++
T Consensus 226 ~~~~~~y~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~ff~~n~~ig~~~~~~~~~ 279 (284)
T PRK12888 226 VGFGALWWIGLAITAGAFAYEHAIVS-PTDLSRVNRAFFTANGFVGIALFGFALL 279 (284)
T ss_pred hCCcHHHHHHHHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 2233 33223344444444444333 3555566666667888899988888765
No 25
>PRK12884 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=1.2e-32 Score=250.27 Aligned_cols=266 Identities=21% Similarity=0.222 Sum_probs=193.0
Q ss_pred cccHHHHHHhhchhHHHHHHHHHHHHHHHHhhhCCCcccccHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCCC
Q psy14930 16 QEKLSSYLLALRPWSLSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHCAGNVVNTYYDYVLGIDTSRRSDD 95 (308)
Q Consensus 16 ~~~~~~~l~~~Rp~~l~~~~~~~~~g~~la~~~~g~~~~~~~~~~ll~~l~~~~~~~~~n~~Ndy~D~~~g~D~~~~~~~ 95 (308)
|+++++|++++||+....+..+.++|.++|.. .+++..+++.++++++.+.++|.+|||+|+| .|+.. +|+
T Consensus 1 ~~~l~~~~~l~R~~~~~~~~~~~~~g~~la~~------~~~~~~~~l~~l~~~l~~~a~~~~Nd~~D~~--~D~~~-r~~ 71 (279)
T PRK12884 1 RTKMKAYLELLRPEHGLMAGIAVVLGAIIALG------GLPLDEALLGFLTAFFASGSANALNDYFDYE--VDRIN-RPD 71 (279)
T ss_pred ChHHHHHHHHhhhhHHHHHHHHHHHHHHHHCC------CCchHHHHHHHHHHHHHHHHHHHHHhhhhHh--hhhcc-CCC
Confidence 45799999999999999999999999988842 3445667888899999999999999999998 57533 589
Q ss_pred CceecccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHheeccCCCCCCcccc-hhHHHHHHHHHH
Q psy14930 96 RTLVDHILSESELVSLGVMLYLVSSAGFILLSYISPAKMEHLAAVFFCGLSSSFLYSGCLGLKYTAL-GDVLILMIFGPI 174 (308)
Q Consensus 96 r~l~~g~ls~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~Ys~~p~lk~~~l-ge~~v~~~~G~l 174 (308)
||+++|++|+++++..+.++..++++++..+ +. . ...+.+.+...++.||. ++|++++ ||+.+++.+|..
T Consensus 72 Rpl~~G~is~~~a~~~~~~~~~~~~~~~~~l---~~---~-~~~~~~~~~~~~~~Ys~--~lK~~~~~~~~~~~~~~~~~ 142 (279)
T PRK12884 72 RPIPSGRISRREALLLAILLFILGLIAAYLI---SP---L-AFLVVILVSVLGILYNW--KLKEYGLIGNLYVAFLTGMT 142 (279)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH---hH---H-HHHHHHHHHHHHHHHHH--hhccccchhHHHHHHHHHHH
Confidence 9999999999999999888877777655432 11 1 12222334566889986 5889985 999999888865
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHhhcCCCChhhhHhcCCcccceeecchhhHHHHHHHHHHHHHHHHHHH-
Q psy14930 175 TVLFAFMSQTGRWEWATICYALPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVYYAFLLFIPYIVFVVWG- 253 (308)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~~~~~~~~~- 253 (308)
++.++.+. ++ .+...+.++....+|+.+.++.||++|+|+|+++|+||+|+++|+|++++++..+....++......
T Consensus 143 ~~~g~~~~-~~-~~~~~~~l~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~~~~~~ 220 (279)
T PRK12884 143 FIFGGIAV-GE-LNEAVILLAAMAFLMTLGREIMKDIEDVEGDRLRGARTLAILYGEKIAGRIAAALFILAVLLSPLPYL 220 (279)
T ss_pred HHHHHHHh-CC-CchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHcCCeeechHhcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55554433 33 3336677777888999999999999999999999999999999999999988887777776544322
Q ss_pred H-HHHH-HHHHHHHHHHHHHHH-HHHhcCCccccccHHHHHHHHHHHHHHHHHH
Q psy14930 254 M-NHSY-YYLLPLVTLKSAFSI-EKQFRCPDKIHLVPKLTAKLNLYFGFLYVVA 304 (308)
Q Consensus 254 ~-~~~~-~~ll~ll~lp~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 304 (308)
. ..++ +....+++.+..... .+..+++ +.++ .+..+.+...++++.+.
T Consensus 221 ~~~~~~~y~~~~~~~~~~~l~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~ 271 (279)
T PRK12884 221 FGIFNILYLAPVLVADLIFLYSAYSLLRSQ-DRET--IRKVRKITLTAMLLALV 271 (279)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHhcCC-CHHH--HHHHHHHHHHHHHHHHH
Confidence 2 2344 333344444444443 4555543 2222 22346666666555443
No 26
>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=100.00 E-value=1.2e-32 Score=250.66 Aligned_cols=275 Identities=19% Similarity=0.214 Sum_probs=197.9
Q ss_pred ccccHHHHHHhhchhH---HHHHHHHHHHHHHHHhhhCCCcccccHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCC-
Q psy14930 15 LQEKLSSYLLALRPWS---LSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHCAGNVVNTYYDYVLGIDTS- 90 (308)
Q Consensus 15 ~~~~~~~~l~~~Rp~~---l~~~~~~~~~g~~la~~~~g~~~~~~~~~~ll~~l~~~~~~~~~n~~Ndy~D~~~g~D~~- 90 (308)
.++++++|+|++||+. ......|.++|..+|.. + ..++..+++.++++++++.++|.+|||+|+| +|++
T Consensus 5 ~~~~~~~y~~L~R~~kp~~~~l~~~~~~~g~~lA~~--~---~~~~~~~~l~~lg~~~~~~a~~~~Nd~~D~~--iD~~~ 77 (290)
T PRK12870 5 LEPTWLAIIRLLRWDKPAGRLILMIPALWAVFLAAH--G---LPPLPLVGIIILGALATSAAGCVVNDLWDRD--IDPQV 77 (290)
T ss_pred cchhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHcc--C---CCCHHHHHHHHHHHHHHHHHHHHHHhHHHhc--cCCCC
Confidence 4457899999998766 34456899999998853 4 5678888889999999999999999999976 8864
Q ss_pred CCCCCCceecccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHheeccCCCCCCcccchhHHHHHH
Q psy14930 91 RRSDDRTLVDHILSESELVSLGVMLYLVSSAGFILLSYISPAKMEHLAAVFFCGLSSSFLYSGCLGLKYTALGDVLILMI 170 (308)
Q Consensus 91 ~~~~~r~l~~g~ls~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~Ys~~p~lk~~~lge~~v~~~ 170 (308)
+|+++||+++|++|++|+..++..+.+++..++..+ ++ . ...+.+++....+.||.. .++++++++..++.
T Consensus 78 ~Rt~~RPL~sG~is~~~a~~~~~~~~~~~~~l~~~l---~~---~-~~~l~~~~~~~~~~Y~~~--KR~t~~~~~~lg~~ 148 (290)
T PRK12870 78 ERTRFRPLASRRLSVKVGIVIAIVALLCAAGLAFFL---NP---L-SFWLCVAAVPVIFLYPLA--KRVFPVPQLVLAIA 148 (290)
T ss_pred CcccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHH---hH---H-HHHHHHHHHHHHHHhhhh--hhccccceeeehHH
Confidence 567799999999999999998888777666554332 11 1 112233445567788752 23446788888888
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHhhcCCCChhhhHhcCCcccceeecchhhHHHHHHHHHHHHHHHH
Q psy14930 171 FGPITVLFAFMSQTGRWEWATICYALPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVYYAFLLFIPYIVFV 250 (308)
Q Consensus 171 ~G~l~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~~~~~~ 250 (308)
+|. +++++|++++++.++.+++++++..+|+.+.+++++++|+|+|+++|.||+|+++|+|++.++... ..+......
T Consensus 149 ~~~-~~l~g~~a~~g~~~~~~~~l~~~~~lw~~~~d~~~a~~D~e~D~~~G~~slav~~G~~~~~~~~~~-~~~~~~~l~ 226 (290)
T PRK12870 149 WGF-AVLISWSAVTGHLDLGTWLLWAATVFWTLGFDTVYAMSDREDDLRIGVNSSAIFFGRYAPEAIGLF-FALTVGFLA 226 (290)
T ss_pred HHh-HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHCCCcchhHHhccccHHHHHHH-HHHHHHHHH
Confidence 875 567778889999999998999999999999999999999999999999999999999998876653 332222222
Q ss_pred HHHH--HHHHHHHHH-HHHHHHHHHHHHHhcCCccccccHHHHHHHHHHHHHHHHHHHHh
Q psy14930 251 VWGM--NHSYYYLLP-LVTLKSAFSIEKQFRCPDKIHLVPKLTAKLNLYFGFLYVVAVTL 307 (308)
Q Consensus 251 ~~~~--~~~~~~ll~-ll~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 307 (308)
.... ..+++++.. .+.........+.++.+.+..+...+..+.|...|+++.+++++
T Consensus 227 ~~~~~~~~~~~y~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~F~~n~~~g~~~~~~~~~ 286 (290)
T PRK12870 227 ILGVLLELHLPFWIGLAIAAVLWARQYRRLRQANLPPLAYGQLFLQNVWIGFLLLAGMIL 286 (290)
T ss_pred HHHHHhCCcHHHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHHHhhHHHHHHHHHHHH
Confidence 2222 233333222 23333333333444332222234567789999999988888765
No 27
>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase. This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.
Probab=100.00 E-value=1.6e-32 Score=249.37 Aligned_cols=213 Identities=21% Similarity=0.242 Sum_probs=173.8
Q ss_pred HHHHHhhchhHHHHHHHHHHHHHHHHhhhCCCcccccHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCC-CCCCCCce
Q psy14930 20 SSYLLALRPWSLSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHCAGNVVNTYYDYVLGIDTS-RRSDDRTL 98 (308)
Q Consensus 20 ~~~l~~~Rp~~l~~~~~~~~~g~~la~~~~g~~~~~~~~~~ll~~l~~~~~~~~~n~~Ndy~D~~~g~D~~-~~~~~r~l 98 (308)
|+|+|++||+.+..+..|+..|.++|... . .+++..++++++++++.++++|.+|||+|+| +|+. +|+++||+
T Consensus 1 ~~~~~l~rp~~~~~~~~~~~~g~~la~~~-~---~~~~~~~~l~~~~~~l~~~a~~~~Nd~~D~~--iD~~~~Rt~~Rpl 74 (280)
T TIGR01473 1 KDYLQLTKPRIISLLLITAFAGMWLAPGG-A---LVNPPLLLLTLLGTTLAAASANAFNMYIDRD--IDKKMKRTRNRPL 74 (280)
T ss_pred CchHHHccHHHHHHHHHHHHHHHHHhCCC-C---CCCHHHHHHHHHHHHHHHHHHHHHHhhcccC--cCCCCCCCCCCCC
Confidence 46899999999999999999999998531 1 3788888999999999999999999999975 7875 57799999
Q ss_pred ecccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHH-HheeccCCCCCCcccchhHHHHHHHHHHHHH
Q psy14930 99 VDHILSESELVSLGVMLYLVSSAGFILLSYISPAKMEHLAAVFFCGLS-SSFLYSGCLGLKYTALGDVLILMIFGPITVL 177 (308)
Q Consensus 99 ~~g~ls~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~-~~~~Ys~~p~lk~~~lge~~v~~~~G~l~~~ 177 (308)
++|++|++|+..++..+.++++.+... ..+. . ...+.+.+++ ..+.||. ++|+++++|..++...|.++++
T Consensus 75 ~sG~is~~~a~~~~~~~~~~g~~il~~--~~~~---~-~~~l~~~~~~~~~~~Yt~--~lKr~~~~~~~v~~~~g~~~~l 146 (280)
T TIGR01473 75 VTGRISPREALAFGLLLGVLGVAILAA--FVNP---L-AALLGLFGIFFYVIVYTI--WLKRRTPQNTVIGGFAGAVPPL 146 (280)
T ss_pred CCCCcCHHHHHHHHHHHHHHHHHHHHH--HHhH---H-HHHHHHHHHHHHHhhcCh--hhccCCchhHHHHHHHHHHHHH
Confidence 999999999999988887766553211 1221 1 1122223333 4788995 4899999999999899999999
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHHHHHhhcCCCChhhhHhcCCcccceeecchhhHHHHHHHHHHHH
Q psy14930 178 FAFMSQTGRWEWATICYALPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVYYAFLLFIPY 246 (308)
Q Consensus 178 ~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~~ 246 (308)
++|+++++++++.+++++++..+|+.........+|+|+||++|+||+|+++|+|++.+..........
T Consensus 147 ~g~~a~~g~~~~~~~~l~~~~~~w~~~~~~~~a~~~~~dd~~~G~~tl~v~~G~~~a~~~~~~~~~~~~ 215 (280)
T TIGR01473 147 IGWAAVTGSISLGAWLLFAIIFLWQPPHFWALALKYKDDYRAAGIPMLPVVKGERITKRQIALYTAALL 215 (280)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHCCCccCCcccCHHHHHHHHHHHHHHHH
Confidence 999999999999998899999999999887888999999999999999999999999886665544433
No 28
>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed
Probab=100.00 E-value=3.6e-32 Score=247.07 Aligned_cols=272 Identities=24% Similarity=0.242 Sum_probs=194.9
Q ss_pred cccHHHHHHhhc---hhHHHHHHHHHHHHHHHHhhhCCCcccccHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCC-C
Q psy14930 16 QEKLSSYLLALR---PWSLSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHCAGNVVNTYYDYVLGIDTS-R 91 (308)
Q Consensus 16 ~~~~~~~l~~~R---p~~l~~~~~~~~~g~~la~~~~g~~~~~~~~~~ll~~l~~~~~~~~~n~~Ndy~D~~~g~D~~-~ 91 (308)
++++++|+|++| |........|.+.|..+|.. + ..++..+++.+++.++.++++|.+|||+|+| +|+. +
T Consensus 2 ~~~~~~y~~L~R~~kp~~~~l~~~p~~~g~~la~~--~---~~~~~~~~l~~~g~~l~~~a~~~~Nd~~D~~--iD~~~~ 74 (282)
T PRK12848 2 QNRLLAYARLMRLDKPIGTLLLLWPTLWALWLAAD--G---IPDLWVLVVFVLGVFLMRAAGCVINDYADRD--FDGHVK 74 (282)
T ss_pred chhHHHHHHHHCccchHHHHHHHHHHHHHHHHHcC--C---CCCHHHHHHHHHHHHHHHHHHHHHHhhHHhc--cCCCCC
Confidence 456899999997 66777788899999998853 3 4567777888889999999999999999986 7864 5
Q ss_pred CCCCCceecccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHheeccCCCCCCcccchhHHHHHHH
Q psy14930 92 RSDDRTLVDHILSESELVSLGVMLYLVSSAGFILLSYISPAKMEHLAAVFFCGLSSSFLYSGCLGLKYTALGDVLILMIF 171 (308)
Q Consensus 92 ~~~~r~l~~g~ls~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~Ys~~p~lk~~~lge~~v~~~~ 171 (308)
|+++||+++|++|++|+..++..++.+++.++..+ .. . ...+.+.+.+..+.|+. ..++++++++..++.+
T Consensus 75 Rt~~RPl~sG~is~~~a~~~~~~l~~~~~~l~~~l---~~---~-~~~l~~~~~~~~~~Y~~--~Kr~~~~~~~~~g~~~ 145 (282)
T PRK12848 75 RTKNRPLASGAVSEKEALALFVVLVLVAFLLVLTL---NT---L-TIWLSVAALALAWIYPF--MKRYTHLPQVVLGAAF 145 (282)
T ss_pred CCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHH---hH---H-HHHHHHHHHHHHHHHHh--HHhcCcccHHHHHHHH
Confidence 67899999999999999999988887766543322 11 1 12233344556788863 2345578899888888
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHhhcCCCChhhhHhcCCcccceeecchhhHHHHHHHHHHHHHHHHH
Q psy14930 172 GPITVLFAFMSQTGRWEWATICYALPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVYYAFLLFIPYIVFVV 251 (308)
Q Consensus 172 G~l~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~~~~~~~ 251 (308)
|..+ ..+|.++++++++.+++++++..+|+....+.++++|+|+|+++|+||+|+++|+|++.+...... +.......
T Consensus 146 g~~~-~~g~~a~~~~~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~~~~~~~~~~-~~~~~~~~ 223 (282)
T PRK12848 146 GWGI-PMAFAAVQGSVPLEAWLLFLANILWTVAYDTQYAMVDRDDDLKIGIKSTAILFGRYDKLIIGLLQL-ATLALLAW 223 (282)
T ss_pred HHHH-HHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHcCCccccHHhccccHHHHHHHHH-HHHHHHHH
Confidence 8644 456888999999999999999999999999999999999999999999999999998887664333 22222222
Q ss_pred HH--HHHHHHHHHH-HHHHHHHHHHHHHhcCCccccccHHHHHHHHHHHHHHHHHHHHh
Q psy14930 252 WG--MNHSYYYLLP-LVTLKSAFSIEKQFRCPDKIHLVPKLTAKLNLYFGFLYVVAVTL 307 (308)
Q Consensus 252 ~~--~~~~~~~ll~-ll~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 307 (308)
.. ...+.+++.. .+.........+..++ ++.++.. +..+.+...|.++.+++++
T Consensus 224 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~F~~n~~~g~~l~~~~~~ 280 (282)
T PRK12848 224 AGWLLGLGWAYYWGLLVAAALFVYQQKLIRD-REREACF-KAFLNNNWVGLVLFAGIAA 280 (282)
T ss_pred HHHHhcCcHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHH-HHHHhCcHHHHHHHHHHHH
Confidence 22 1223333322 2222222333344433 3333333 4556688899888888765
No 29
>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed
Probab=100.00 E-value=5.8e-32 Score=245.42 Aligned_cols=264 Identities=21% Similarity=0.258 Sum_probs=182.2
Q ss_pred ccHHHHHHhhchhHHHHHHHHHHHHHHHHhhhCCCcccccHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCCCC
Q psy14930 17 EKLSSYLLALRPWSLSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHCAGNVVNTYYDYVLGIDTSRRSDDR 96 (308)
Q Consensus 17 ~~~~~~l~~~Rp~~l~~~~~~~~~g~~la~~~~g~~~~~~~~~~ll~~l~~~~~~~~~n~~Ndy~D~~~g~D~~~~~~~r 96 (308)
|++|+|+|++||++++.+..+.+.|.+++.. + ..++...++.+++.++.+.++|.+|||+|+| .|+ .++|+|
T Consensus 1 m~l~~~~~l~Rp~~~~~~~~~~~~G~~la~~--~---~~~~~~~~l~~~~~~~~~~a~~~~Nd~~D~~--~D~-~n~~~R 72 (277)
T PRK12883 1 MELKAFIEITRPHNCILAGIVGILGSLVALG--G---IPPIKTLILIFLVVYLGCSGGNTINDYFDYE--IDK-INRPNR 72 (277)
T ss_pred CCHHHHHHHHhhhHHHHHHHHHHHHHHHHcC--C---CCcHHHHHHHHHHHHHHHHHHhHHHhhhhHh--ccc-cCCCCC
Confidence 4589999999999999999999999988742 2 2345556777888999999999999999998 675 355899
Q ss_pred ceecccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHheeccCCCCCCccc-chhHHHHHHHHHHH
Q psy14930 97 TLVDHILSESELVSLGVMLYLVSSAGFILLSYISPAKMEHLAAVFFCGLSSSFLYSGCLGLKYTA-LGDVLILMIFGPIT 175 (308)
Q Consensus 97 ~l~~g~ls~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~Ys~~p~lk~~~-lge~~v~~~~G~l~ 175 (308)
|+++|++|+++++.++..+.++++.++.. .+ +. ...+.+.+...++.||. ++|+++ +||+.++..+|..+
T Consensus 73 pl~sG~is~~~a~~~~~~l~~~g~~l~~~----~~--~~-~~~~~~~~~~~~~~Y~~--~~k~~~~lg~~~vg~~~g~~~ 143 (277)
T PRK12883 73 PLPRGAMSRKAALYYSLLLFAVGLALAYL----IN--IE-AFLFALGAYVLMFLYAW--KLKPLPFIGNVVVALLTGATP 143 (277)
T ss_pred CCCCCccCHHHHHHHHHHHHHHHHHHHHH----HH--HH-HHHHHHHHHHHHHHHhh--cccCCcchhhHHHHHHHHHHH
Confidence 99999999999999888887766554432 22 11 12223334566889987 467766 69999999999887
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHhhcCCCChhhhHhcCCcccceeecchhhHHHHHHHHHHHHHHHHH-HHH
Q psy14930 176 VLFAFMSQTGRWEWATICYALPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVYYAFLLFIPYIVFVV-WGM 254 (308)
Q Consensus 176 ~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~~~~~~~-~~~ 254 (308)
+.+.. . .+++++..+.... .+++..+..+.||+||+|+|+++|+||+|+++|+|++++............... ...
T Consensus 144 ~~g~~-a-~~~~~~~~~~~~~-~fl~~~~~~~~~~~~D~e~D~~~G~~Tlpv~~G~~~a~~~~~~~~~~~~~~~~l~~~~ 220 (277)
T PRK12883 144 IYGAI-A-VGRIGLAGYLAIC-AFLVNVAREIMKDIEDIEGDKAKGAKTLPIIIGKKRAAYIGAIFGVLTVIASFLPVKA 220 (277)
T ss_pred HHHHH-H-hccccHHHHHHHH-HHHHHHHHHHHhhhhhhccHHHcCCcCcChHhcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65543 3 3667776554433 556667888999999999999999999999999999998776554322222111 111
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHhcCCcccc-ccHHHHHHHHHHHHHH
Q psy14930 255 NHSY-YYLLPLVTLKSAFSIEKQFRCPDKIH-LVPKLTAKLNLYFGFL 300 (308)
Q Consensus 255 ~~~~-~~ll~ll~lp~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l 300 (308)
..+. +....++..++.+...+..+++++.+ ...++..|..+..|++
T Consensus 221 ~~~~~y~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (277)
T PRK12883 221 GIGLGYLPIIIVDAIILYAAYLVLRNPDRETAHKGQKLLKIAIFLAVI 268 (277)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHhCcchhHHHHHHHHHHHHHHHHHH
Confidence 1122 22223355666666666666532211 1123455555555544
No 30
>PRK12886 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=8.4e-32 Score=245.17 Aligned_cols=272 Identities=19% Similarity=0.126 Sum_probs=192.4
Q ss_pred ccHHHHHHhhchhHHHHHHHHHHHHHHHHhhhCCCcccccHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCC-CCCCC
Q psy14930 17 EKLSSYLLALRPWSLSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHCAGNVVNTYYDYVLGIDTS-RRSDD 95 (308)
Q Consensus 17 ~~~~~~l~~~Rp~~l~~~~~~~~~g~~la~~~~g~~~~~~~~~~ll~~l~~~~~~~~~n~~Ndy~D~~~g~D~~-~~~~~ 95 (308)
+++|+|+|++||+.......+.+.|..+|.. | ..++...++..+++++.++++|.+|||+|++ +|+. +|+++
T Consensus 6 ~~~~~y~~L~r~~~~~~~~~~~~~g~~lA~~--~---~~~~~~l~~~~l~~~l~~~a~~~~Nd~~D~~--iD~~~~RT~~ 78 (291)
T PRK12886 6 TKLKVFLEMIKFSHTLFALPFAGIGAVLAAL--G---LPGASQLDWILMAMVGARTAAMGFNRLIDAE--IDARNPRTAG 78 (291)
T ss_pred HHHHHHHHHhCccchHHHHHHHHHHHHHhcc--C---CCCHHHHHHHHHHHHHHHHHHHHHHhHHhhc--cCCCCCCCCC
Confidence 4589999999999888888888999998853 3 4567778888999999999999999999985 7864 56789
Q ss_pred CceecccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHheeccCCCCCCc-ccchhHHHHHHHHHH
Q psy14930 96 RTLVDHILSESELVSLGVMLYLVSSAGFILLSYISPAKMEHLAAVFFCGLSSSFLYSGCLGLKY-TALGDVLILMIFGPI 174 (308)
Q Consensus 96 r~l~~g~ls~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~Ys~~p~lk~-~~lge~~v~~~~G~l 174 (308)
||+++|++|++|+..+...+.+. ++.+....+. . ...+.+.+......||. .|+ ++++++..++.++.
T Consensus 79 RPL~sG~is~~~A~~~~~~~~~~----~~~l~~~~~~--~-~~~l~~~~~~~~~~Y~~---~Kr~t~~~~~~~g~~~~~- 147 (291)
T PRK12886 79 RAIPAGLISKGSAILFIVLSSLL----MLFAAWFLNP--L-CLYLSPPALFFLLLYSY---CKRFTALAHVVLGFCLAL- 147 (291)
T ss_pred CCCCCCCcCHHHHHHHHHHHHHH----HHHHHHHHHH--H-HHHHHHHHHHHHHHHhh---hhccccccHHHHHHHHHH-
Confidence 99999999999998865443332 2222222221 1 11222223444677884 344 46899988887654
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHhhcCCCChhhhHhcCCcccceeecchhhHHHHHHHHHHHHHHHHHHHH
Q psy14930 175 TVLFAFMSQTGRWEWATICYALPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVYYAFLLFIPYIVFVVWGM 254 (308)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~~~~~~~~~~ 254 (308)
+++++|++++++.++.+++.+++.++|+.+.++.++++|+|+|+++|+||+|+++|+|++++.........+........
T Consensus 148 ~~l~g~~a~~g~~~~~~~ll~~~~~lw~~~~~~~~a~~D~e~D~~aGi~slpv~~G~~~~~~~~~~~~~~~~~~~~~~~~ 227 (291)
T PRK12886 148 APLGAWIAIRGTIELPAILLGLAVLFWVAGFDILYALQDLEFDRKEGLHSIPAKLGVNGSLWIARVFHLLMIGFLFALGI 227 (291)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhccHHhHHHcCCcCcchhcCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 55677899999999999999999999999999999999999999999999999999999999887776666655443332
Q ss_pred --HHHH-HHHHHHHHHHHHHHHHHHhcCCccccccHHHHHHHHHHHHHHHHHHHHh
Q psy14930 255 --NHSY-YYLLPLVTLKSAFSIEKQFRCPDKIHLVPKLTAKLNLYFGFLYVVAVTL 307 (308)
Q Consensus 255 --~~~~-~~ll~ll~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 307 (308)
..++ +....++.........+..++ +|+++..++..+.+...+.++.+++++
T Consensus 228 ~~~~~~~y~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~F~~~~~~~~~l~~~~~~ 282 (291)
T PRK12886 228 SAGLGPWFLAGLAVTGILLLYEHWLLRG-GDLTRLDAAFFNMNGYISVTLFAATLF 282 (291)
T ss_pred HhcCcHHHHHHHHHHHHHHHHHHHHhCC-CChhHHHHHHHHHhHHHHHHHHHHHHH
Confidence 2233 332222222222234444543 332233455566677778666666553
No 31
>PRK12882 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=9.2e-32 Score=243.99 Aligned_cols=215 Identities=23% Similarity=0.244 Sum_probs=167.0
Q ss_pred ccHHHHHHhhchhHHHHHHHHHHHHHHHHhhhCCCcccccHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCCCC
Q psy14930 17 EKLSSYLLALRPWSLSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHCAGNVVNTYYDYVLGIDTSRRSDDR 96 (308)
Q Consensus 17 ~~~~~~l~~~Rp~~l~~~~~~~~~g~~la~~~~g~~~~~~~~~~ll~~l~~~~~~~~~n~~Ndy~D~~~g~D~~~~~~~r 96 (308)
|++|+|+|++||+....+..|.+.|.+++.. . ..+...+++++++.++.++++|.+|||+|+| +|+. ++|+|
T Consensus 2 m~~~~~~~l~Rp~~~~~~~~~~~~g~~~a~~--~---~~~~~~~~l~~l~~~l~~~~~~~~Nd~~D~~--iD~~-~~~~R 73 (276)
T PRK12882 2 MTVRGYLELTRPVNAVVAGVAAFIGAFIAGG--I---LSSPSLTGLAFAAVFLATGAGNAINDYFDRE--IDRI-NRPDR 73 (276)
T ss_pred CCHHHHHHHHhhhHHHHHHHHHHHHHHHhcc--c---cchHHHHHHHHHHHHHHHHHHHHHHHHhhhc--cccc-cCCCC
Confidence 5689999999999999999999999999843 2 2234446788899999999999999999997 6863 45899
Q ss_pred ceecccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHheeccCCCCCCccc-chhHHHHHHHHHHH
Q psy14930 97 TLVDHILSESELVSLGVMLYLVSSAGFILLSYISPAKMEHLAAVFFCGLSSSFLYSGCLGLKYTA-LGDVLILMIFGPIT 175 (308)
Q Consensus 97 ~l~~g~ls~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~Ys~~p~lk~~~-lge~~v~~~~G~l~ 175 (308)
|+++|++|++|++.++..+.+++++++..+ ++ . ...+.+.+....+.||. ++|+++ +||+.++...|..+
T Consensus 74 pl~~G~is~~~a~~~~~~l~~~g~~~~~~l---~~---~-~~~~~~~~~~~~~~Yt~--~lK~~~~~g~~~vg~~~g~~~ 144 (276)
T PRK12882 74 PIPSGAVSPRGALAFSILLFAAGVALAFLL---PP---L-CLAIALFNSLLLVLYAE--TLKGTPGLGNASVAYLTGSTF 144 (276)
T ss_pred CcCCCCcCHHHHHHHHHHHHHHHHHHHHHH---hH---H-HHHHHHHHHHHHHHHHH--HHhcccchhHHHHHHHHHHHH
Confidence 999999999999999998887777654332 11 1 12223334556788986 688887 59999988888765
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHhhcCCCChhhhHhcCCcccceeecchhhHHHHHHHHHHHHHHH
Q psy14930 176 VLFAFMSQTGRWEWATICYALPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVYYAFLLFIPYIVF 249 (308)
Q Consensus 176 ~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~~~~~ 249 (308)
..++.+ .........+..++...+++.+.+..||++|+|+|+++|+||+|+++|+|++.++...+.....+..
T Consensus 145 ~~g~~~-~~~~~~~~~~~l~~~~fl~~~~~~~~~~~~D~e~D~~~G~~tlpv~~G~~~t~~~~~~~~~~~~~~~ 217 (276)
T PRK12882 145 LFGGAA-VGTEGLLALLVLFALAALATLAREIIKDVEDIEGDRAEGARTLPILIGVRKALYVAAAFLLVAVAAS 217 (276)
T ss_pred HHHHHH-hcccchHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHcCCccccHHhhHHHHHHHHHHHHHHHHHHH
Confidence 555433 3323344556667777888899999999999999999999999999999999998777665555433
No 32
>PRK12874 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=2.4e-31 Score=241.99 Aligned_cols=274 Identities=18% Similarity=0.167 Sum_probs=197.1
Q ss_pred cccHHHHHHhhchhHHHHHHHHHHHHHHHHhhh---CCCcccccHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCC-C
Q psy14930 16 QEKLSSYLLALRPWSLSASLIPTLLGCALAVKL---PIEKGQFSWIILFVTLLTVISVHCAGNVVNTYYDYVLGIDTS-R 91 (308)
Q Consensus 16 ~~~~~~~l~~~Rp~~l~~~~~~~~~g~~la~~~---~g~~~~~~~~~~ll~~l~~~~~~~~~n~~Ndy~D~~~g~D~~-~ 91 (308)
++++|+|+|.+||+....+....+.|..+|... .| .+++...+++++++++.+.++|.+|||+|+| +|+. +
T Consensus 5 ~~~l~~y~~l~r~~~~~~~l~~a~~g~~la~~~~~~~~---~~~~~~~~l~~l~~~l~~~a~~~~Nd~~Drd--iD~~~~ 79 (291)
T PRK12874 5 TKKLKDISELVVFKHSIFSLPFIFIAMIVASKQKNDTG---WFGFKLLILGILAAVSARNFAMAFNRLVDRD--IDKDNP 79 (291)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhhhccCC---CCCHHHHHHHHHHHHHHHHHHHHHHhhhhhc--cccCCC
Confidence 456999999999988777777777777776521 23 5788889999999999999999999999985 8875 5
Q ss_pred CCCCCceecccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHheeccCCCCCCcc-cchhHHHHHH
Q psy14930 92 RSDDRTLVDHILSESELVSLGVMLYLVSSAGFILLSYISPAKMEHLAAVFFCGLSSSFLYSGCLGLKYT-ALGDVLILMI 170 (308)
Q Consensus 92 ~~~~r~l~~g~ls~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~Ys~~p~lk~~-~lge~~v~~~ 170 (308)
|+++||+++|++|++|++.++..+..++..+. +..+. . ...+.++.+.....||. .|++ +++++..++.
T Consensus 80 RT~~RPl~sG~is~~~a~~~~~~~~~~~~~~~----~~~n~-~--~~~l~~~~~~~~~~Y~~---~KR~t~~~~~~~g~~ 149 (291)
T PRK12874 80 RTANRPSVDGRISVKSMVLFIVLNALIFIGVS----YFINP-L--AFKLSFPFLIVLGGYSY---FKRFSSLAHLVLGLS 149 (291)
T ss_pred CCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHH----HHHhH-H--HHHHHHHHHHHHHHHhh---hcccccccHHHHHHH
Confidence 78999999999999999988877765433332 22221 1 12222334445667884 4544 6799999988
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHhhcCCCChhhhHhcCCcccceeecchhhHHHHHHHHHHHHHHHH
Q psy14930 171 FGPITVLFAFMSQTGRWEWATICYALPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVYYAFLLFIPYIVFV 250 (308)
Q Consensus 171 ~G~l~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~~~~~~ 250 (308)
+|..++ .++.+.+|+.++..++++++.++|+.+++..++++|+|+|+++|+||+|+++|+|++.+....+.....+...
T Consensus 150 ~~~~~l-~G~~av~g~~~~~~~~l~~~~~~w~~~~~~~~a~~D~~~D~~~Gi~slpv~~G~~~~~~~~~~~~~~~~~~~~ 228 (291)
T PRK12874 150 LGLAPI-AGVVAVLGEIPLWSVFLALGVMFWVAGFDLLYSLQDMEFDKKRGLHSIPSKFGEKATLFISRLFHLLAVLFWL 228 (291)
T ss_pred HHHHHH-HHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCCCcccHHhhhHhHHHHHHHHHHHHHHHHH
Confidence 876554 4566778899988888889999999999999999999999999999999999999999877666654444433
Q ss_pred HHHH--HHHHHHHHH-HHHHHHHHHHHHHhcCCccccccHHHHHHHHHHHHHHHHHHHHh
Q psy14930 251 VWGM--NHSYYYLLP-LVTLKSAFSIEKQFRCPDKIHLVPKLTAKLNLYFGFLYVVAVTL 307 (308)
Q Consensus 251 ~~~~--~~~~~~ll~-ll~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 307 (308)
.... ..+.+.... .+.........+..+++ +. +..+.....+...++++.+++++
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~-~~~~~ff~sn~~l~~l~~~~~~~ 286 (291)
T PRK12874 229 LFVWCAHLGLFAYLGVIVSALILLYEHYLVRKD-FK-KIDKAFFTLNGYLGIVFFIFIVL 286 (291)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHHHHHhcCC-Ch-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3222 122333322 23344444444555432 22 23445568888888888887764
No 33
>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial. A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.
Probab=100.00 E-value=7e-31 Score=238.46 Aligned_cols=266 Identities=18% Similarity=0.138 Sum_probs=185.9
Q ss_pred HHhhchhHHHHHHHHHHHHHHHHhhhCCCcccccHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCC-CCCCCCceecc
Q psy14930 23 LLALRPWSLSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHCAGNVVNTYYDYVLGIDTS-RRSDDRTLVDH 101 (308)
Q Consensus 23 l~~~Rp~~l~~~~~~~~~g~~la~~~~g~~~~~~~~~~ll~~l~~~~~~~~~n~~Ndy~D~~~g~D~~-~~~~~r~l~~g 101 (308)
.+..||+.......|...|..+|....+ ..++...++.++++++.++++|.+|||+|+| +|++ +|+++||+++|
T Consensus 8 ~R~~kp~~~~l~~~~~~~g~~la~~~~~---~~~~~~~~~~~~~~~l~~~a~~~~Nd~~D~~--iD~~~~Rt~~RPl~sG 82 (281)
T TIGR01474 8 MRADKPIGTLLLLWPCLWSLLLAAQAGG---IPPLYLLGLFTVGAILMRGAGCVINDIWDRD--FDPQVERTKSRPLASG 82 (281)
T ss_pred HccccHHHHHHHHHHHHHHHHHHhcccC---CCcHHHHHHHHHHHHHHHHHHHHHHhHhhhc--ccccCCcccCCCCCCC
Confidence 4455588888899999999999865323 3466667788889999999999999999975 7863 56789999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHheeccCCCCCCc-ccchhHHHHHHHHHHHHHHHH
Q psy14930 102 ILSESELVSLGVMLYLVSSAGFILLSYISPAKMEHLAAVFFCGLSSSFLYSGCLGLKY-TALGDVLILMIFGPITVLFAF 180 (308)
Q Consensus 102 ~ls~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~Ys~~p~lk~-~~lge~~v~~~~G~l~~~~~~ 180 (308)
++|++|++.++..+.+++...+. ..+. . ...+.+.+++..+.||. .|+ .+++++..++.++..++ .+|
T Consensus 83 ~is~~~a~~~~~~~~~~~~~l~~----~l~~--~-~~~l~~~~~~~~~~Y~~---~Kr~~~~~~~~~g~~~~~~~~-~g~ 151 (281)
T TIGR01474 83 AVSVRQAILFLLVQLLVALGVLL----QLNP--L-TILLGVASLALVATYPF---MKRITYWPQLVLGLAFGWGAL-MGW 151 (281)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHH----HhhH--H-HHHHHHHHHHHHHHhch---hcccccccHHHHHHHHHHHHH-HHH
Confidence 99999999888877666555432 2221 1 22333445666889984 444 46799988888776554 447
Q ss_pred HHhcCCCcHHHHHHHHHHHHHHHHHHhhcCCCChhhhHhcCCcccceeecchhhHHHHHHHHHHHHHHHHHHH-HHHHH-
Q psy14930 181 MSQTGRWEWATICYALPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVYYAFLLFIPYIVFVVWG-MNHSY- 258 (308)
Q Consensus 181 ~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~~~~~~~~~-~~~~~- 258 (308)
+++++++++.++++.+...+|+.+.+.+++++|+|+|+++|+||+|+++|+|+++...........+..+... ...++
T Consensus 152 ~a~~g~~~~~~~ll~~~~~lw~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (281)
T TIGR01474 152 AAVTGDLSTAAWVLYLANILWTLGYDTIYAMQDKEDDIKIGVKSTALRFGDNTKPWLGGLYALMILLLALAGLIAGLGPV 231 (281)
T ss_pred HHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHcCCCcccHHhhhhhHHHHHHHHHHHHHHHHHHHHHhCCcHH
Confidence 7889999988887888899999999999999999999999999999999998876654443333333222221 12233
Q ss_pred HHHHHHH-HHHHHHHHHHHhcCCccccccHHHHHHHHHHHHHHHHHHHHh
Q psy14930 259 YYLLPLV-TLKSAFSIEKQFRCPDKIHLVPKLTAKLNLYFGFLYVVAVTL 307 (308)
Q Consensus 259 ~~ll~ll-~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 307 (308)
+.....+ ...+.+. ...+++ ++.++ -++..|.+...+.++.+++++
T Consensus 232 y~~~~~~~~~~~~~~-~~~~~~-~~~~~-~~~~F~~~~~~~~~l~~~~~~ 278 (281)
T TIGR01474 232 YYLGLAAAALLLIRQ-IATLDI-RDPEN-CLKLFKANNYVGLLLFAGIAL 278 (281)
T ss_pred HHHHHHHHHHHHHHH-HHHhCC-CCHHH-HHHHHHHhhHHHHHHHHHHHH
Confidence 3222222 2233333 333333 23222 346778888888888877764
No 34
>PRK12875 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=1.3e-30 Score=235.52 Aligned_cols=266 Identities=20% Similarity=0.148 Sum_probs=175.7
Q ss_pred ccccHHHHHHhhchhHHHHHHHHHHHHHHHHhhhCCCcccccHHHHHHHHHHHHHHHHHHHH----hhhhhhhhcccCCC
Q psy14930 15 LQEKLSSYLLALRPWSLSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHCAGNV----VNTYYDYVLGIDTS 90 (308)
Q Consensus 15 ~~~~~~~~l~~~Rp~~l~~~~~~~~~g~~la~~~~g~~~~~~~~~~ll~~l~~~~~~~~~n~----~Ndy~D~~~g~D~~ 90 (308)
..+++|.|+++.||++++.++.|+++|.++|...++ ..+++ +.+++++.++ .++|+ +|||+|+| .|+.
T Consensus 4 ~~~~~~~l~~l~RP~~~~~~~~p~l~G~~lA~~~~~--~~~~~--~~~~ll~~~~--i~~Nl~~y~iND~~D~D--~Dr~ 75 (282)
T PRK12875 4 LGDRLRYLLVLSRPRFWLYLAGPVVVGVAYAADSVA--DLFSP--AAVALFAYFL--FPANVFLYGVNDVFDAD--TDEL 75 (282)
T ss_pred hHHHHHHHHHHhCccchHHHHHHHHHHHHHHhccCc--ccccH--HHHHHHHHHH--HHHHHHHhcchhhhhhh--cccc
Confidence 345689999999999999999999999999976432 12444 4444544444 45666 69999996 4643
Q ss_pred -CCCC-CCceecccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHheeccCCC-CCCcccchhHHH
Q psy14930 91 -RRSD-DRTLVDHILSESELVSLGVMLYLVSSAGFILLSYISPAKMEHLAAVFFCGLSSSFLYSGCL-GLKYTALGDVLI 167 (308)
Q Consensus 91 -~~~~-~r~l~~g~ls~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~Ys~~p-~lk~~~lge~~v 167 (308)
+++. .|++. ++.+.....+..+++.+++.+....+.. .....++.++.++.||.|| |+|++|++|+.+
T Consensus 76 ~prk~~~r~~~------~s~~~~~~~~~~l~~~l~l~l~~~~~~~---~~~~ll~~i~~~~~YS~pP~rlk~~p~~~~~~ 146 (282)
T PRK12875 76 NPKKDREREVR------YRGDRRVLVAVALSGALALAFLLVLPPA---AWPALLAFLVLSVEYSAPPLRFKTTPVLDSLS 146 (282)
T ss_pred CCCccCCCCcc------HHHHHHHHHHHHHHHHHHHHHHHHhhHH---HHHHHHHHHHHHHHHcCCCccchhccHHHHHH
Confidence 1222 23222 3333322222232334444443332211 1223345667889999999 999999999865
Q ss_pred HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHhhcCCCChhhhHhcCCcccceeecchhhHHHHHHHHHHHHH
Q psy14930 168 LMIFGPITVLFAFMSQTGRWEWATICYALPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVYYAFLLFIPYI 247 (308)
Q Consensus 168 ~~~~G~l~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~~~ 247 (308)
+..+ .+++.++|++|+++.+...+.. ..++++.+.++.||+||+|+|+++|+||+|+++|+|++++++..+..++..
T Consensus 147 ~g~~-~~~~~~~y~~~tg~~~~~~l~~--a~~l~~~~~~~in~i~Die~D~~aGi~Tlav~lG~~~a~~~~~~~~~~a~~ 223 (282)
T PRK12875 147 NGLY-ILPGVAAYALVSGSLPPLLAVA--GGWLWAMGMHTFSAIPDIEPDRAAGIRTTATVLGERRTYAYCAACWLLAAA 223 (282)
T ss_pred HHHH-HHHHHHHHHHHcCCCcHHHHHH--HHHHHHHHHHHHHhccCHHHHHHcCCccchhhccHhhHHHHHHHHHHHHHH
Confidence 4333 4666788999999887655433 357999999999999999999999999999999999999988877776665
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccHHHHHHHHHHHHHHHHHHHH
Q psy14930 248 VFVVWGMNHSYYYLLPLVTLKSAFSIEKQFRCPDKIHLVPKLTAKLNLYFGFLYVVAVT 306 (308)
Q Consensus 248 ~~~~~~~~~~~~~ll~ll~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 306 (308)
..+... +.+.++ +...|..... ...++.+.++.....-..|...|.++..+.+
T Consensus 224 ~~~~~~---~~~~~~-~~~~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (282)
T PRK12875 224 AFAAVD---LRLGAL-LLVYPALVLA--ILRAGIAVDRAYWWFPAINTVVGMLLTLGGL 276 (282)
T ss_pred HHHHHH---HHHHHH-HHHHHHHHHH--HhccccchhhhhHHHHHHHHHHHHHHHHHHH
Confidence 554432 222211 2223322211 1233456666777777888888888876653
No 35
>PRK13595 ubiA prenyltransferase; Provisional
Probab=100.00 E-value=1.3e-30 Score=234.08 Aligned_cols=266 Identities=17% Similarity=0.062 Sum_probs=184.4
Q ss_pred cHHHHHHhhchhHHHHHHHHHHHHHHHHhhhCCCcccccH--HHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCCC
Q psy14930 18 KLSSYLLALRPWSLSASLIPTLLGCALAVKLPIEKGQFSW--IILFVTLLTVISVHCAGNVVNTYYDYVLGIDTSRRSDD 95 (308)
Q Consensus 18 ~~~~~l~~~Rp~~l~~~~~~~~~g~~la~~~~g~~~~~~~--~~~ll~~l~~~~~~~~~n~~Ndy~D~~~g~D~~~~~~~ 95 (308)
.++.+++++||.+|..+..|+.+|...+ ++ .+|| ...++++...+..|+..|.+|||+|+| +| .+|.++
T Consensus 11 ~l~~ll~~sRP~~wi~t~~~~~~G~~~~---g~---~~~~~~~~~~l~~~~~~p~n~~~~giND~fD~e--iD-a~Npr~ 81 (292)
T PRK13595 11 PLRRLLLISRPALWVNTVGTLVTGVWLT---GH---LYTLDPGVLPLLLYLTLPFNLLIYGLNDLADRE--TD-AASPRK 81 (292)
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHHHHh---cC---cccchhHHHHHHHHHHHHHHHHHHHHHhhhhhh--hh-ccCCCC
Confidence 3788999999999999999999999665 22 5776 667777888899999999999999998 67 356677
Q ss_pred CceecccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHheeccCCC-CCCcccchhHHHHHHHHHH
Q psy14930 96 RTLVDHILSESELVSLGVMLYLVSSAGFILLSYISPAKMEHLAAVFFCGLSSSFLYSGCL-GLKYTALGDVLILMIFGPI 174 (308)
Q Consensus 96 r~l~~g~ls~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~Ys~~p-~lk~~~lge~~v~~~~G~l 174 (308)
|++++|++|+++++.....+...++.+++++....+. ....+.+++.+++++||.|| |+|++|+.+-.....+|..
T Consensus 82 ~~i~~G~is~~~~~~~~~~~~~~~~~~~l~la~~l~~---~~~~l~~v~~~l~~~YS~pPlRlK~rp~l~~l~~~~~g~p 158 (292)
T PRK13595 82 GGWQGARLSPGEVRPLLRAVLLLNAPFLLYLALLLPP---AATLLLLLYAALFVGYSLPPLRFKARPFLDGLSNAAYALP 158 (292)
T ss_pred CCCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHhH---HHHHHHHHHHHHHHHHccCccchhcCcchhHHHHHHHHHH
Confidence 8899999999999988776666555555555444332 12223345567899999998 9999998654444555542
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHhhcCCCChhhhHhcCCcccceeecchhhHHHHHHHHHHHHHHHHHHHH
Q psy14930 175 TVLFAFMSQTGRWEWATICYALPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVYYAFLLFIPYIVFVVWGM 254 (308)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~~~~~~~~~~ 254 (308)
.+...+..++...... .+...+|..+.+..++++|+|+||+.|.||+|+++|+|++.++...+.+++-.......
T Consensus 159 --~~~~~~~~g~~~~~~~--l~a~~~w~~g~dii~ai~DiegDr~~Gi~Slpv~lG~r~a~~~a~~~~~~a~~~~~~~~- 233 (292)
T PRK13595 159 --LALPALALGAPVPWPP--LLALMAWSVGKHAFDAAQDIPADRAAGTRTVATTLGVRGTALYALAWFLLAGALLWPVS- 233 (292)
T ss_pred --HHHHHHHcCCcchHHH--HHHHHHHHHHHHHHHhccChHhHHHcCCeechHHhCcHhHHHHHHHHHHHHHHHHHHhc-
Confidence 2223344554433222 24456788999999999999999999999999999999999988776665554433322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCC--ccccccHHHHHHHHHHHHHHHHHH
Q psy14930 255 NHSYYYLLPLVTLKSAFSIEKQFRCP--DKIHLVPKLTAKLNLYFGFLYVVA 304 (308)
Q Consensus 255 ~~~~~~ll~ll~lp~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~ 304 (308)
.+.+.. +.+|-.....+..+++ ++-++.-+.+...|...|.+..+-
T Consensus 234 -~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 281 (292)
T PRK13595 234 -RLTALA---LWLICGGMALALWRRPTPETAHRLYPLSIVTPWIVGTVAGVL 281 (292)
T ss_pred -chHHHH---HHHHHHHHHHHHhcCCCHHHHhccchHHHHHhHHHHHHHHHH
Confidence 111211 3333333333433332 344455555666777777655443
No 36
>PRK13106 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=1.7e-30 Score=236.85 Aligned_cols=273 Identities=16% Similarity=0.114 Sum_probs=190.7
Q ss_pred hhhccccHHHHHHhhchhHHHHHHHHHHHHHHHHhhhCCCcccccHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCC-
Q psy14930 12 FTMLQEKLSSYLLALRPWSLSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHCAGNVVNTYYDYVLGIDTS- 90 (308)
Q Consensus 12 l~~~~~~~~~~l~~~Rp~~l~~~~~~~~~g~~la~~~~g~~~~~~~~~~ll~~l~~~~~~~~~n~~Ndy~D~~~g~D~~- 90 (308)
+.+.++++++|+|++||+....+..+...|..+|.. | ..++..+++.++++++++.++|.+|||+|+| +|+.
T Consensus 8 ~~~~~~~l~~yl~L~R~~~~~~~l~~~~~g~~la~~--~---~~~~~~l~l~~lg~~l~~~a~~~~Nd~~D~d--iD~~~ 80 (300)
T PRK13106 8 LNNTRSKFYIILRFLRIEQTFFSLPMAYLGAFVAIK--G---IPPISTLILIFLALFFLRTAGMTNDNLADLE--IDAKN 80 (300)
T ss_pred chhhHHHHHHHHHHHccccHHHHHHHHHHHHHHHcC--C---CCCHHHHHHHHHHHHHHHHHHHHHHhhHHhc--cccCC
Confidence 455777899999999999888888889999988753 4 5678888889999999999999999999975 8874
Q ss_pred CCCCCCceecccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHheeccCCCCCCcc-cchhHHHHH
Q psy14930 91 RRSDDRTLVDHILSESELVSLGVMLYLVSSAGFILLSYISPAKMEHLAAVFFCGLSSSFLYSGCLGLKYT-ALGDVLILM 169 (308)
Q Consensus 91 ~~~~~r~l~~g~ls~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~Ys~~p~lk~~-~lge~~v~~ 169 (308)
+|+++||+++|++|++|+..+...+.+.+.+.. ...+. . ...+...+++..+.|+. .||+ +++++..++
T Consensus 81 ~RT~~RPl~sG~is~~~A~~~~~~~~~~~~~~~----~~ln~-~--~~~l~~~~~~~~~~Y~~---~KR~t~~~~~~lg~ 150 (300)
T PRK13106 81 PRTKNRPLVTGAIKISEAKALITAGLILFFASA----YLVNR-W--ALLLSPIVALIAMSYPY---MKRYTAFANYHLAS 150 (300)
T ss_pred CccCCCCCCCCCcCHHHHHHHHHHHHHHHHHHH----HHHhH-H--HHHHHHHHHHHHHHHhH---HhcCCcchHHHHHH
Confidence 578999999999999999887654433322222 11111 1 11222223344556874 4544 579999999
Q ss_pred HHHHHHHHHHHHHhcCCC--------cHHHHHHHHHHHHHHHHHHhhcCCCChhhhHhcCCcccceeecchhhHHHHHHH
Q psy14930 170 IFGPITVLFAFMSQTGRW--------EWATICYALPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVYYAFL 241 (308)
Q Consensus 170 ~~G~l~~~~~~~~~~~~~--------~~~~~l~~l~~~l~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~l~~~l 241 (308)
.+|..++.+ +.+.+|.. +..++++.+...+|+.+.+..++++|+|+|+++|+||+|+++| |+++++...+
T Consensus 151 ~~~~~~~~G-~~a~~g~~~~~~~~~l~~~~~~l~~~~~lw~~~~d~iya~~D~e~D~~~Gi~Slpv~~G-~~a~~~~~~~ 228 (300)
T PRK13106 151 IQGLAVFSG-AVAVLGLYANSLIQVLLRVPWLFVIGTILWAAGFDLYNHIPDAEFDREMGLHSFAVVLG-KWALTFAGLN 228 (300)
T ss_pred HHHHHHHHH-HHHHcCCcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHccchhhHHHCCCCccHHHHh-hhHHHHHHHH
Confidence 998765444 55655633 2344556666788999999999999999999999999999999 8899888777
Q ss_pred HHHHHHHHHHHHH--HHHHHHHH-HHHHHHHHHHHHHHhcCCccccccHHHHHHHHHHHHHHHHHHHHh
Q psy14930 242 LFIPYIVFVVWGM--NHSYYYLL-PLVTLKSAFSIEKQFRCPDKIHLVPKLTAKLNLYFGFLYVVAVTL 307 (308)
Q Consensus 242 ~~~~~~~~~~~~~--~~~~~~ll-~ll~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 307 (308)
......+...... ..++.++. ..++.-......+..+. + ++..+.+ +.|...|+++.+++++
T Consensus 229 ~~~~v~l~~~~~~~~~lg~~y~~~~~~~~~~l~~~~~~~~~--~-~~~~~~F-~~n~~ig~~~~~~~~~ 293 (300)
T PRK13106 229 QLFSVVLDLLGDLYYGLGPIAIAATILHGLIMAYAYYLASK--K-GDFGRAF-YYNIYSSIVLGLGIII 293 (300)
T ss_pred HHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHhCC--c-hHHHHHH-HHccHHHHHHHHHHHH
Confidence 7766655544332 23333322 22222222223333332 2 4445544 8888899988888764
No 37
>PRK13362 protoheme IX farnesyltransferase; Provisional
Probab=99.98 E-value=6.9e-30 Score=233.72 Aligned_cols=272 Identities=17% Similarity=0.170 Sum_probs=194.5
Q ss_pred cccHHHHHHhhchhHHHHHHHHHHHHHHHHhhhCCCcccccHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCC-CCCC
Q psy14930 16 QEKLSSYLLALRPWSLSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHCAGNVVNTYYDYVLGIDTS-RRSD 94 (308)
Q Consensus 16 ~~~~~~~l~~~Rp~~l~~~~~~~~~g~~la~~~~g~~~~~~~~~~ll~~l~~~~~~~~~n~~Ndy~D~~~g~D~~-~~~~ 94 (308)
++++|+|++++||+.+....+|+..|..+|.. + .+++...++++++..+.++++|.+|||+|+| +|+. ++++
T Consensus 10 ~~~l~~~~~L~RP~~~~~~~~~~~~G~~la~~--~---~~~~~~~~~~~lg~~l~~aaa~~~Nd~~D~~--iD~~~~Rt~ 82 (306)
T PRK13362 10 EASLKDYIQVTKPGIIFGNVISVAGGFFLASK--G---HVDPVLMLAAVIGLSLVVASGCALNNCIDRD--IDAKMQRTR 82 (306)
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcc--C---CCCHHHHHHHHHHHHHHHHHHHHHhChHHhC--cCCCCCCCC
Confidence 45689999999999999999999999999832 4 5777777788889999999999999999965 8864 5678
Q ss_pred CCceecccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHheeccCCCCCCcccchhHHHHHHHHHH
Q psy14930 95 DRTLVDHILSESELVSLGVMLYLVSSAGFILLSYISPAKMEHLAAVFFCGLSSSFLYSGCLGLKYTALGDVLILMIFGPI 174 (308)
Q Consensus 95 ~r~l~~g~ls~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~Ys~~p~lk~~~lge~~v~~~~G~l 174 (308)
+||+++|++|++|+..++..+..++..++..+ .+. ....+..++.+...+.||. ++|+++..+..++...|.+
T Consensus 83 ~RPlpsG~is~~~A~~~~~~l~~~g~~ll~~~--~n~---~~~~l~~~~~~~~~~~Yt~--~lKr~t~~~~~vgg~~ga~ 155 (306)
T PRK13362 83 NRVTVTGEISLGEALGFGLALGVAGFGLLAAF--TNP---LAALFAAFGYVVYVGVYSL--YLKRNSVYGTLVGSLSGAM 155 (306)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH--HhH---HHHHHHHHHHHHHHHHHhH--HHhccCcHhHHHHHHHHHH
Confidence 99999999999999999888777666543221 111 1111222222334668984 5999998766677677778
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHhhcCCCChhhhHhcCCcccceeecchhhHHHHHHHHHHHHHHHHH-HH
Q psy14930 175 TVLFAFMSQTGRWEWATICYALPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVYYAFLLFIPYIVFVV-WG 253 (308)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~~~~~~~-~~ 253 (308)
+++++|++++|+.++..+++.....+|+.++..+.+++|+|+|+++|.||+|++.|+|++++.......+....... ..
T Consensus 156 p~l~G~~a~~g~~~~~~~~l~~~~~~W~~~h~~~~ai~~~~Dy~~aG~~~lpv~~G~~~t~~~~~~~~~~~~~~s~l~~~ 235 (306)
T PRK13362 156 PPVVGYCAVTGQFDAGALILLLMFSLWQMPHSYAIAIFRFNDYAAAGIPVLPVARGIAKTKLHIVLYILVFALVTALLPL 235 (306)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHCCCeeeceecChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888999999999999988999999999999999999999999999999999999998887544333222221111 11
Q ss_pred HH-HHH-HHHHH-HHHHHHHHHHHHHhcCCccccccHHHHHHHHHHHHHHHHHHH
Q psy14930 254 MN-HSY-YYLLP-LVTLKSAFSIEKQFRCPDKIHLVPKLTAKLNLYFGFLYVVAV 305 (308)
Q Consensus 254 ~~-~~~-~~ll~-ll~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l 305 (308)
.+ .+. +.... .+.....+...+..+++++. ++.+|-.+.+++.++..+
T Consensus 236 ~g~~g~~y~~~~~~~~~~~l~~a~~~~~~~~~~----~~~a~~~f~~S~~yl~~~ 286 (306)
T PRK13362 236 AGYTGIGYLAVAAATSLWWLAMALKGYRHAVDD----TVWARQLFGFSILTITAL 286 (306)
T ss_pred HccccHHHHHHHHHHHHHHHHHHHHHHhccCCc----hHHHHHHHHHHHHHHHHH
Confidence 11 223 32222 22344445555666543221 234566666666665444
No 38
>PRK12895 ubiA prenyltransferase; Reviewed
Probab=99.98 E-value=7.1e-30 Score=230.87 Aligned_cols=271 Identities=14% Similarity=0.142 Sum_probs=193.5
Q ss_pred ccHHHHHHhhchhHHHHHHHHHHHHHHHHhhhCCCcccccHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCC-CCCCC
Q psy14930 17 EKLSSYLLALRPWSLSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHCAGNVVNTYYDYVLGIDTS-RRSDD 95 (308)
Q Consensus 17 ~~~~~~l~~~Rp~~l~~~~~~~~~g~~la~~~~g~~~~~~~~~~ll~~l~~~~~~~~~n~~Ndy~D~~~g~D~~-~~~~~ 95 (308)
|++|+|+|.+||+....+....+.|..+|.. + ..++...++.+++++++..++|.+|||+|+| +|+. +|+++
T Consensus 1 ~~~~~~~el~k~~~t~~al~~a~~g~~lA~~--~---~~~~~~l~l~~~~~~~~rsag~~~Ndi~Dr~--iD~~~~RT~~ 73 (286)
T PRK12895 1 MNFRDIVDYIKLEHTVFDLPFILAGYVIAAG--H---YIHPIKILLILIAAVSARTSAMSINRIEGLR--YDMINPRKKD 73 (286)
T ss_pred CcHHHHHHHHhHHHHHHHHHHHHHHHHHhcC--C---CCCHHHHHHHHHHHHHHHHHHHHHHhHHHhc--ccCCCCcCCC
Confidence 4689999999999888888888889888742 3 4566667777888999999999999999997 7875 57899
Q ss_pred CceecccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhHHHHH-HHHHHHHheeccCCCCCCccc-chhHHHHHHHHH
Q psy14930 96 RTLVDHILSESELVSLGVMLYLVSSAGFILLSYISPAKMEHLAAV-FFCGLSSSFLYSGCLGLKYTA-LGDVLILMIFGP 173 (308)
Q Consensus 96 r~l~~g~ls~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~-~~~~~~~~~~Ys~~p~lk~~~-lge~~v~~~~G~ 173 (308)
||+++|++|++|++.+...+..++..+... .++ .... ..........|+ ..||+. ++++..+..+|.
T Consensus 74 RPLpsG~is~~~A~~~~~~~~~~~~~~~~~---ln~-----l~~~l~~~~~~l~~~yp---~~KR~t~~~~~~lG~~~g~ 142 (286)
T PRK12895 74 WALVSGRIKMREAIAFTIIFIAIFEICTFL---LNR-----LVFILSPIVIFLFIIDP---FLKRYTAWRHIYMGSIIGL 142 (286)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHH---HhH-----HHHHHHHHHHHHHHHHH---HHHhCccccHHHHHHHHHh
Confidence 999999999999999888776655443221 221 1111 111222333343 356665 688999999994
Q ss_pred HHHHHHHHHhcCCCcH--HHHHHHHHHHHHHHHHHhhcCCCChhhhHhcCCcccceeecchhhHHHHHHHHHHHHHHHHH
Q psy14930 174 ITVLFAFMSQTGRWEW--ATICYALPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVYYAFLLFIPYIVFVV 251 (308)
Q Consensus 174 l~~~~~~~~~~~~~~~--~~~l~~l~~~l~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~~~~~~~ 251 (308)
+++++|.+.+++.++ .++++.+...+|+.+.+.+++++|+|+|++.|.||+|+++|+|++.++...+..++......
T Consensus 143 -~~l~g~~Av~g~~~~~~~~~~l~~~~~~W~~g~D~iYa~qD~e~D~~~Gv~S~a~~fG~~~~~~i~~~~~~~~~~~~~~ 221 (286)
T PRK12895 143 -GVLAGYLAVIPAFPYNLLIYIIFISSSLWIAGFDIIYVIPDIEYDKINGLKTIMNTYGIKNGLYISDIFHISSLILFWI 221 (286)
T ss_pred -HHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHcCCCchHHHHCCccHHHHHHHHHHHHHHHHHH
Confidence 667778888888764 34567778899999999999999999999999999999999999987776666665555443
Q ss_pred HHH-HHHHHHHHHH-HHHHHHHHHHHHhcCCccccccHHHHHHHHHHHHHHHHHHHHh
Q psy14930 252 WGM-NHSYYYLLPL-VTLKSAFSIEKQFRCPDKIHLVPKLTAKLNLYFGFLYVVAVTL 307 (308)
Q Consensus 252 ~~~-~~~~~~ll~l-l~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 307 (308)
... ..+++++... +..-......+..+. ++..+......+.|...|+++.+++++
T Consensus 222 ~g~~~~~~~y~~~~~~~~~~l~~q~~~~~~-~~~~~~~~~~F~~N~~ig~~~~~~~~~ 278 (286)
T PRK12895 222 SGIYIRTLWYLAALIIIYTLVIYQHLIIDP-RNPINKRMSFFNANSFIGFVFLIGIIL 278 (286)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence 332 1223223222 222223333334433 455555556778888899998888765
No 39
>PRK12872 ubiA prenyltransferase; Reviewed
Probab=99.97 E-value=1.7e-29 Score=230.27 Aligned_cols=267 Identities=18% Similarity=0.191 Sum_probs=191.4
Q ss_pred cHHHHHHhhchhHHHHHHHHHHHHHHHHhhhCCCcccccHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCCCCc
Q psy14930 18 KLSSYLLALRPWSLSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHCAGNVVNTYYDYVLGIDTSRRSDDRT 97 (308)
Q Consensus 18 ~~~~~l~~~Rp~~l~~~~~~~~~g~~la~~~~g~~~~~~~~~~ll~~l~~~~~~~~~n~~Ndy~D~~~g~D~~~~~~~r~ 97 (308)
-++++++..|+.....+.....++.... . ..++......++++++.+.++|.+|||+|+| .|+ .++|+|+
T Consensus 3 ~~~~~~~~~~~~~~~~a~~~~~l~~~~~----~---~~~~~~~~~~~~~~~~~~~~~~~~N~~~D~~--~D~-~n~~~R~ 72 (285)
T PRK12872 3 LLFAFLKLFRYGNLLIAALGQSLVYMAS----L---LLGLPISWLLLLITFLIAAAVYIINYLTDLE--EDI-INKPERV 72 (285)
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHHH----H---HHcChhHHHHHHHHHHHHHHHHHhhhhcCCc--hhh-cCCCchH
Confidence 3689999999998877776555543211 1 2343456677888999999999999999998 463 4567787
Q ss_pred eecccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHheeccCCC--CCCccc-chhHHHHHHHHHH
Q psy14930 98 LVDHILSESELVSLGVMLYLVSSAGFILLSYISPAKMEHLAAVFFCGLSSSFLYSGCL--GLKYTA-LGDVLILMIFGPI 174 (308)
Q Consensus 98 l~~g~ls~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~Ys~~p--~lk~~~-lge~~v~~~~G~l 174 (308)
.+ |+++.......+..+++.+++++...... +. ...+.+.+...++.||.|| ++|+.| +||+.++..+|..
T Consensus 73 ~~----s~~~~~~~~~~l~~i~~~~~~~l~~~~~~-~~-~~~~~~~~~~~~~~Ys~~~~~~lk~~p~~~~~~vg~~~g~~ 146 (285)
T PRK12872 73 VF----SETKAYGLFLLLNVLGLYLGAYLLAVIGG-PK-FALIFIIPLILGILYSVFFKRRLKRIPLFKNLVVSLLWALS 146 (285)
T ss_pred HH----HHHHHHHHHHHHHHHHHHHHHHHHHHhcc-HH-HHHHHHHHHHHHHHHhChhHHHHhhhhhHhhHHHHHHHHHH
Confidence 66 56777777777766677666655332211 11 2223334556799999975 689887 7999999999999
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHhhcCCCChhhhHhcCCcccceeecchhhHHHHHHHHHHHHHHHHHHHH
Q psy14930 175 TVLFAFMSQTGRWEWATICYALPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVYYAFLLFIPYIVFVVWGM 254 (308)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~~~~~~~~~~ 254 (308)
++.++++.+++.++...++.++..++++...+..||+||+|+|+++|+||+|+++|+|++++++..+..++++..+....
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~~~~d~~D~e~D~~~G~~Tlpv~lG~~~t~~~~~~~~~~~~~~~~~~~~ 226 (285)
T PRK12872 147 PLILGVYYYQLTIFSLLLLYAVFIFLKSFIREIVFDIKDIEGDRKSGLKTLPIVLGKERTLKFLLILNLLFLILLILGVY 226 (285)
T ss_pred HHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhcccchhHHHcCCcccchhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98888888877778878888888888999999999999999999999999999999999999999999988877765443
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHhcCCcccccc--HHHHHHHHHHHHHH
Q psy14930 255 --NHSYYYLLPLVTLKSAFSIEKQFRCPDKIHLV--PKLTAKLNLYFGFL 300 (308)
Q Consensus 255 --~~~~~~ll~ll~lp~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l 300 (308)
..|.+.+..++..|..+...+.+.++++.++. ....-+..+..|++
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 276 (285)
T PRK12872 227 TGLLPLLLLVLLLLLAYVLYYIIKLFAADDKKDLLYLSLLDKEHMLLGLI 276 (285)
T ss_pred HhHhhHHHHHHHHHHHHHHHHHHHHHhcccccchhHHHHHhHHHHHHHHH
Confidence 24555555555566555444443322222222 22344666665554
No 40
>PLN02809 4-hydroxybenzoate nonaprenyltransferase
Probab=99.97 E-value=1.6e-28 Score=223.02 Aligned_cols=272 Identities=15% Similarity=0.067 Sum_probs=186.3
Q ss_pred ccHHHHHHhhch---hHHHHHHHHHHHHHHHHhhhCCCcccccHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCC-CC
Q psy14930 17 EKLSSYLLALRP---WSLSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHCAGNVVNTYYDYVLGIDTS-RR 92 (308)
Q Consensus 17 ~~~~~~l~~~Rp---~~l~~~~~~~~~g~~la~~~~g~~~~~~~~~~ll~~l~~~~~~~~~n~~Ndy~D~~~g~D~~-~~ 92 (308)
+++++|+|++|. ........|+..|..++...++ ..++..+++.+++++++++++|.+|||+|+| +|+. +|
T Consensus 4 ~~~~~y~~L~Rl~kp~~~~l~~~p~~~~~~l~a~~~~---~~~~~~l~l~~~g~~~~~~a~~~~Nd~~Dr~--iD~~~~R 78 (289)
T PLN02809 4 PSLRPYAKLARLDKPIGTWLLAWPCMWSIALAAPPGS---LPDLKMLALFGCGALLLRGAGCTINDLLDRD--IDKKVER 78 (289)
T ss_pred hhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccCC---CCcHHHHHHHHHHHHHHHHHHHHHHhhHHhc--cccCCCC
Confidence 568899988884 5556678899999888753222 3567777888999999999999999999976 8965 57
Q ss_pred CCCCceecccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHheeccCCCCCCcc-cchhHHHHHHH
Q psy14930 93 SDDRTLVDHILSESELVSLGVMLYLVSSAGFILLSYISPAKMEHLAAVFFCGLSSSFLYSGCLGLKYT-ALGDVLILMIF 171 (308)
Q Consensus 93 ~~~r~l~~g~ls~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~Ys~~p~lk~~-~lge~~v~~~~ 171 (308)
+++||+++|++|++|+..+...+..+++.+... ..+ . ...+...+++..+.||. .||+ +++++..++.+
T Consensus 79 T~~RPL~sG~is~~~A~~~~~~~~~~~~~~~~~---l~~--~--~~~l~~~~~~~~~~Y~~---~KR~t~~~~~~lg~~~ 148 (289)
T PLN02809 79 TKLRPIASGALTPFQGVGFLGAQLLLGLGILLQ---LNN--Y--SRILGASSLLLVFTYPL---MKRFTFWPQAFLGLTF 148 (289)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH---HhH--H--HHHHHHHHHHHHHHHhH---HHhcCcchHHHHHHHH
Confidence 789999999999999998777766555544322 111 1 12222334556778874 5555 47898888777
Q ss_pred HHHHHHHHHHHhcCCCcHHHHH-HHHHHHHHHHHHHhhcCCCChhhhHhcCCcccceeecchhhHHHHHHHHHHHHHHHH
Q psy14930 172 GPITVLFAFMSQTGRWEWATIC-YALPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVYYAFLLFIPYIVFV 250 (308)
Q Consensus 172 G~l~~~~~~~~~~~~~~~~~~l-~~l~~~l~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~~~~~~ 250 (308)
+..+ +.+|.+++++.++..++ +.....+|+.+......++|+|+|+++|+||+|+++|+|.+.++. .+....+..+.
T Consensus 149 ~~~~-l~g~~av~g~~~~~~~~~l~~~~~~W~~~~d~~ya~~D~e~D~~~Gi~sl~v~~G~~~~~~i~-~~~~~~~~~l~ 226 (289)
T PLN02809 149 NWGA-LLGWAAVKGSLDPAVVLPLYASGVCWTLVYDTIYAHQDKEDDLKVGVKSTALRFGDDTKLWLT-GFGAASIGGLA 226 (289)
T ss_pred HHHH-HHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHhchhhHHhCCCcccchhhcHHHHHHHH-HHHHHHHHHHH
Confidence 6544 55577888888776654 566677889999999999999999999999999999999555544 45555555544
Q ss_pred HHHH--HHHH-HHHHHHHHHHHHHHHHHHhcCCccccccHHHHHHHHHHHHHHHHHHHHh
Q psy14930 251 VWGM--NHSY-YYLLPLVTLKSAFSIEKQFRCPDKIHLVPKLTAKLNLYFGFLYVVAVTL 307 (308)
Q Consensus 251 ~~~~--~~~~-~~ll~ll~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 307 (308)
.... ..+. +.....+..-......+.++ +++.++..+. .+.|...|+++.+|+++
T Consensus 227 ~~g~~~~~~~~~~~~~~~~~~~l~~~~~~v~-~~~~~~~~~~-F~~n~~~g~~~~~~~~~ 284 (289)
T PLN02809 227 LSGYNAGLGWPYYAGLAAAAGHLAWQIQTVD-LSSRADCNRK-FVSNKWFGAIVFAGIVL 284 (289)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHH-HHhCCHHHHHHHHHHHH
Confidence 3332 2222 22211121222222233332 2344444444 68888899888888765
No 41
>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]. These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane
Probab=99.97 E-value=1.3e-28 Score=220.43 Aligned_cols=190 Identities=27% Similarity=0.380 Sum_probs=151.7
Q ss_pred HHHHHHHHHHHHHHhhhCCCcccccHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCCCCceecccCCHHHHHHH
Q psy14930 32 SASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHCAGNVVNTYYDYVLGIDTSRRSDDRTLVDHILSESELVSL 111 (308)
Q Consensus 32 ~~~~~~~~~g~~la~~~~g~~~~~~~~~~ll~~l~~~~~~~~~n~~Ndy~D~~~g~D~~~~~~~r~l~~g~ls~~~~~~~ 111 (308)
+.++.|++.|.+.+. ++ ..++..+..+.+++++.+.++|..|||+|+|+|.|+ +++|+||+++|++|+++++..
T Consensus 2 ~~~~~~~l~~~~~~~--~~---~~~~~~~~~~~l~~~~~~~~~~~~Nd~~D~~~D~~~-~~~~~rPl~~g~i~~~~~~~~ 75 (257)
T PF01040_consen 2 PLSFLPVLAGLALAS--GG---PFNWPIFLLGLLAVFLLQLAVYLLNDYFDYEEDRIH-PNKPNRPLPSGRISPRQALIF 75 (257)
T ss_pred hHHHHHHHHHHHHHH--cC---CCCHHHHHHHHHHHHHHHHHHHHhhChhhhhcCccc-ccccCcchhHHHHhHHHHHHH
Confidence 567888888844433 34 688888899999999999999999999999965552 478999999999999999997
Q ss_pred HHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHheeccCCC-CCCcccc-hhHHHHHHHHHHHHHHHHHHhcCCCcH
Q psy14930 112 GVMLYLVSSAGFILLSYISPAKMEHLAAVFFCGLSSSFLYSGCL-GLKYTAL-GDVLILMIFGPITVLFAFMSQTGRWEW 189 (308)
Q Consensus 112 ~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~Ys~~p-~lk~~~l-ge~~v~~~~G~l~~~~~~~~~~~~~~~ 189 (308)
+..+..++++++ +..+. . ...+.+.+.+.++.|| +| ++|++++ +|+.+++.+|..+..+. +.++++.+.
T Consensus 76 ~~~~~~l~l~l~----~~~~~--~-~~~~~~~~~~~~~~Ys-~~~~lk~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 146 (257)
T PF01040_consen 76 ALILLLLGLLLA----LLLGP--W-FLLILLLGFLLGLLYS-PPLRLKRRPLWGELVVALVFGLLILLGA-YAAGGDPPP 146 (257)
T ss_pred HHHHHHHHHHHH----HhcCc--h-hHHHHHHHHHHHHHHh-hhhhhcceeccchhhHHHhhhHhhhhhh-hhcCCcccH
Confidence 777766665544 23332 1 2222233445568999 55 9999997 99999999887776554 456676677
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCChhhhHhcCCcccceeecchhhHH
Q psy14930 190 ATICYALPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHV 236 (308)
Q Consensus 190 ~~~l~~l~~~l~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~ 236 (308)
..+..+.+.+++...+.+.+|++|+|+|+++|+||+|+++|+++++.
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~D~~~D~~~g~~Tl~v~~G~~~~~~ 193 (257)
T PF01040_consen 147 PPFLLAIFFFLLIFAIMFFNDIRDIEGDRKAGRRTLPVLLGEKKARY 193 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCCcchHHHHHHHHHHH
Confidence 88888888899999999999999999999999999999999999998
No 42
>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]
Probab=99.96 E-value=5.2e-27 Score=214.16 Aligned_cols=269 Identities=23% Similarity=0.234 Sum_probs=194.6
Q ss_pred HHHHHHhhchhHHHHHHHHHHHHHHHHhhhCCCcccccHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCC-CCCCCCc
Q psy14930 19 LSSYLLALRPWSLSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHCAGNVVNTYYDYVLGIDTS-RRSDDRT 97 (308)
Q Consensus 19 ~~~~l~~~Rp~~l~~~~~~~~~g~~la~~~~g~~~~~~~~~~ll~~l~~~~~~~~~n~~Ndy~D~~~g~D~~-~~~~~r~ 97 (308)
++++++.-||........|..+|..++.. + -.++...++.++++++...++|.+|||+|+| +|+. +++++||
T Consensus 13 ~~~l~r~~r~i~~l~~~~~~~~~~~~~~~--~---~~~~~~~~l~~l~~~~~~~ag~~iND~~D~e--iD~~n~rt~~RP 85 (289)
T COG0382 13 LLKLLRLDRPIFNLLLLLPALLGLLLAAS--G---LPSLKLLLLAFLAFFLARSAGYVINDLADRE--IDRINPRTKNRP 85 (289)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHc--C---CchHHHHHHHHHHHHHHHHHhHHHHHHhhhh--ccCCCCCccCCC
Confidence 77888888999999999999999998862 2 2346788888999999999999999999998 6754 4567999
Q ss_pred eecccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHheeccCCCCCCccc-chhHHHHHHHHHHHH
Q psy14930 98 LVDHILSESELVSLGVMLYLVSSAGFILLSYISPAKMEHLAAVFFCGLSSSFLYSGCLGLKYTA-LGDVLILMIFGPITV 176 (308)
Q Consensus 98 l~~g~ls~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~Ys~~p~lk~~~-lge~~v~~~~G~l~~ 176 (308)
+++|++|+++++....++.+++..+...+ ++ . ...+.++..++.+.| |++|+.+ ++++..+..+|..+.
T Consensus 86 l~sG~vS~~~a~~~~~~~~~~~~~~a~~l---~~---~-~~~l~~~~~~l~~~Y---~~~Kr~~~~~~~~lg~~~~~~~~ 155 (289)
T COG0382 86 LPSGRVSVKEALLLAILLLLLGLALALLL---NP---L-AFLLSLAALVLALAY---PFLKRFTFLPQLVLGLAFGLGAL 155 (289)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHH---hH---H-HHHHHHHHHHHHHHH---HHhhcCCchHHHHHHHHHHHHHH
Confidence 99999999999998888876665554322 11 1 123334456677888 3677776 699999999987665
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHHHHhhcCCCChhhhHhcCCcccceeecchhhHHHHHHHHHHHHHHHHH-HHHH
Q psy14930 177 LFAFMSQTGRWEWATICYALPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVYYAFLLFIPYIVFVV-WGMN 255 (308)
Q Consensus 177 ~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~~~~~~~-~~~~ 255 (308)
.+ +.+..++.+...+++.+...+|+.+....++++|+|+||+.|.||+|+.+|++++..+.........+.... +...
T Consensus 156 ~g-~~a~~~~~~~~~~~l~~~~~l~~~~~~~i~~~~D~e~D~~~G~~s~~~~~G~~~a~~l~~~~~~~~~~~~~~~~~~~ 234 (289)
T COG0382 156 AG-AAAVGGSLPLLAWLLLLAAILWTLGYDIIYAIQDIEGDRKAGLKSLPVLFGIKKALALALLLLLASALLVLLGLLAG 234 (289)
T ss_pred HH-HHHHhCccchHHHHHHHHHHHHHHHHHHHHhccCccchHhcCCcchHHHhCchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55 556667677788889999999999999999999999999999999999999999999888777332222222 1111
Q ss_pred -HHHHHHHHHH-HHHHHHHHHHHhcCCccccccHHHHHHHHHHHHHHHHHHHHh
Q psy14930 256 -HSYYYLLPLV-TLKSAFSIEKQFRCPDKIHLVPKLTAKLNLYFGFLYVVAVTL 307 (308)
Q Consensus 256 -~~~~~ll~ll-~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 307 (308)
.+.+.+.+.+ ..-...+.....+. +..+......+.+...+++..++.++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (289)
T COG0382 235 LLGLIYLLGLLVAALLLLYQILIVDV--RDPPACFALFDVNLLLGLLLFIGLIL 286 (289)
T ss_pred hchHHHHHHHHHHHHHHHHHHHHhcc--cChHHHHHHHHHhhHHHHHHHHHHHH
Confidence 2222222222 12222222222222 23344566778888888888877654
No 43
>PRK12876 ubiA prenyltransferase; Reviewed
Probab=99.96 E-value=1.3e-26 Score=209.76 Aligned_cols=276 Identities=14% Similarity=0.133 Sum_probs=185.3
Q ss_pred ccHHHHHHhhchhHHHHHHHHHHHHHHHHhhh----CCCcccccHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCC-C
Q psy14930 17 EKLSSYLLALRPWSLSASLIPTLLGCALAVKL----PIEKGQFSWIILFVTLLTVISVHCAGNVVNTYYDYVLGIDTS-R 91 (308)
Q Consensus 17 ~~~~~~l~~~Rp~~l~~~~~~~~~g~~la~~~----~g~~~~~~~~~~ll~~l~~~~~~~~~n~~Ndy~D~~~g~D~~-~ 91 (308)
+++|.|.|.+|.+--..++==...|..+|... +|.-+..+|..+++..++++++..++|.+|||+|+| +|+. +
T Consensus 2 ~~~~~~~~~i~~~ht~Falpfa~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~a~~~~Rsag~~~Nd~~Drd--iD~~~~ 79 (300)
T PRK12876 2 MRIKYFQQLINCKYALFSALFLSASTVFALSLPEISFSLFSLGGIKTISLGGSAFFCARTVGIIVNQIIDCA--IDKKNP 79 (300)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHhc--ccCCCC
Confidence 35899999999754333332234466777521 220002468888899999999999999999999997 7875 6
Q ss_pred CCCCCceecccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHheeccCCCCCCccc-chhHHHHHH
Q psy14930 92 RSDDRTLVDHILSESELVSLGVMLYLVSSAGFILLSYISPAKMEHLAAVFFCGLSSSFLYSGCLGLKYTA-LGDVLILMI 170 (308)
Q Consensus 92 ~~~~r~l~~g~ls~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~Ys~~p~lk~~~-lge~~v~~~ 170 (308)
|+++||+++|++|++|++.+...+..++.++. ...+. . ...+.+.+++..+.||. .||+. ++++..++.
T Consensus 80 RT~~RPLpsG~is~~~A~~~~~~~~~~~~~l~----~~ln~-l--~~~l~~~~~~~~~iY~~---~KR~t~~~~~vLGl~ 149 (300)
T PRK12876 80 RTSSRVLPAKLLSINFSMLLLTLCSFLFLSLC----WLLNP-L--CFSLAVLSTLLMIIYPY---TKRVTFLCHWILGLV 149 (300)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH----HHHhH-H--HHHHHHHHHHHHHHHHh---HhcCCchhHHHHHHH
Confidence 78999999999999999988865443333322 22121 1 11222334445578874 67776 588877777
Q ss_pred HHHHHHHHHHHHhcCC-CcH----HHHHHHHHHHHHHHHHHhhcCCCChhhhHhcCCcccceeecchhhHHHHHHHHHHH
Q psy14930 171 FGPITVLFAFMSQTGR-WEW----ATICYALPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVYYAFLLFIP 245 (308)
Q Consensus 171 ~G~l~~~~~~~~~~~~-~~~----~~~l~~l~~~l~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~ 245 (308)
++. .+.+++.+.+++ .++ ..++.+++..+|+.+.+..++++|+|+||+.|.||+|+++|++++.++...+..+.
T Consensus 150 ~~~-~~l~~~~Av~~~~~~~~l~~~~~lw~~~~~~~~~g~DiiYa~qD~e~D~~~Gl~Slpv~fG~~~a~~ia~~~~~l~ 228 (300)
T PRK12876 150 YYL-AILMNFFAIIETPLSFSLFCMASLWGISFGMIIAANDIIYAIQDLEFDRKEGLFSIPARFGEKKAIRIASANLIAS 228 (300)
T ss_pred HHH-HHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHhhHHHcCCccchHHHCchhHHHHHHHHHHHH
Confidence 776 445556665555 555 34556777888899999999999999999999999999999999877776666655
Q ss_pred HHHHHHHHH--HHH-HHHHHHHH--HHHH-HHHHHHHhcCCccccccHHHHHHHHHHHHHHHHHHHHh
Q psy14930 246 YIVFVVWGM--NHS-YYYLLPLV--TLKS-AFSIEKQFRCPDKIHLVPKLTAKLNLYFGFLYVVAVTL 307 (308)
Q Consensus 246 ~~~~~~~~~--~~~-~~~ll~ll--~lp~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 307 (308)
.+....... ..+ ++++..++ ..-+ .+++.+.. ++|..+......+.|...|+++.++++.
T Consensus 229 ~~~l~~~g~~~~l~~~~y~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~F~~N~~ig~~~~~~~~~ 294 (300)
T PRK12876 229 AIAYLLIGYFVSNKKIFYLCSLVPLTVILKTIKHYSLI--DKKKSTLEQKFFLGNIYLALSFFVNMIG 294 (300)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHc--CCCchHHHHHHHHhcCHHHHHHHHHHHH
Confidence 544433332 233 32333332 2222 33443444 2455566777889999999998888753
No 44
>PRK12873 ubiA prenyltransferase; Reviewed
Probab=99.95 E-value=6.4e-26 Score=205.36 Aligned_cols=278 Identities=19% Similarity=0.175 Sum_probs=183.6
Q ss_pred ccccHHHHHHhhch---hHHHHHHHHHHHHHHHHhhhCCCcccccHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCC-
Q psy14930 15 LQEKLSSYLLALRP---WSLSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHCAGNVVNTYYDYVLGIDTS- 90 (308)
Q Consensus 15 ~~~~~~~~l~~~Rp---~~l~~~~~~~~~g~~la~~~~g~~~~~~~~~~ll~~l~~~~~~~~~n~~Ndy~D~~~g~D~~- 90 (308)
..+++++|+|++|| ......+.|...|..++.. + ..++...++.+++..++..++|.+||+.|+| +|+.
T Consensus 3 ~~~~~~~y~~L~R~~Kp~~~~ll~~p~~~g~~la~~--~---~~~~~~~~~~~~g~~l~~~a~~~~Nd~~D~~--iD~~~ 75 (294)
T PRK12873 3 RSIKLSPWFELLRWNKPTGRLILLIPAGWSLWLTPS--A---PPSLLLLLLIILGGLAVSGAGCIANDLWDRR--IDRKV 75 (294)
T ss_pred chHhHHHHHHHhCccccchHHHHHHHHHHHHHHccC--C---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hccCC
Confidence 34568999999664 5566678899999777532 2 4577778889999999999999999999997 7864
Q ss_pred CCCCCCceecccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHheeccCCCCCCcccchhHHHHHH
Q psy14930 91 RRSDDRTLVDHILSESELVSLGVMLYLVSSAGFILLSYISPAKMEHLAAVFFCGLSSSFLYSGCLGLKYTALGDVLILMI 170 (308)
Q Consensus 91 ~~~~~r~l~~g~ls~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~Ys~~p~lk~~~lge~~v~~~ 170 (308)
+|+++||+++|++|++|+..++.++..++......+..... .. ...+.+.++.....||.-+|+++. .++..++.
T Consensus 76 ~RT~~RPl~sG~is~~~A~~~~~~~~~~~~~~~~~l~~~~n--~l-~~~l~~~~~~~~~~Y~~~KR~t~~--~~~vlg~~ 150 (294)
T PRK12873 76 ERTKNRPLARGKISLKTAYSLLIVLLLLSLFVVLSLPQPSR--NL-CLSLAFLALPPILIYPSAKRWFAY--PQAILALC 150 (294)
T ss_pred CcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcchh--HH-HHHHHHHHHHHHHHHHHHHhcccc--chHHHHHH
Confidence 67889999999999999999888776655543322110001 01 111222234456678742244443 46666665
Q ss_pred HHHHHHHHHHHHhcCCCcHHH--HHHHHHHHHHHHHHHhhcCCCChhhhHhcCCcccceeecchhhHHHHHHHHHHHHHH
Q psy14930 171 FGPITVLFAFMSQTGRWEWAT--ICYALPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVYYAFLLFIPYIV 248 (308)
Q Consensus 171 ~G~l~~~~~~~~~~~~~~~~~--~l~~l~~~l~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~~~~ 248 (308)
++ .+++++|.+.+|+.++.. +.+.+...+|+.+..++..++|+|+|+++|.||+|+++|+ ++......+..+...+
T Consensus 151 ~a-~~~l~gw~Av~g~~~~~~~~l~l~~~~~~W~~~~d~iyA~qD~edD~~~Gv~slpv~~G~-~~~~~~~~~~~~~~~l 228 (294)
T PRK12873 151 WG-FAVLIPWAAAEGSLNGGWPLLFCWLATLLWTFGFDTVYAMADRRDDAKIGLNSSALSLGS-NALKTVQICYFLTSIF 228 (294)
T ss_pred HH-hHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHcCCcccchhcCh-hhHHHHHHHHHHHHHH
Confidence 55 455677888889888643 3334678899999999999999999999999999999997 5555555555555544
Q ss_pred HHHHHH--HHHHHHHHHH-HHHHHHHHHHHHhcCCccc-cccHHHHHHHHHHHHHHHHHHHHh
Q psy14930 249 FVVWGM--NHSYYYLLPL-VTLKSAFSIEKQFRCPDKI-HLVPKLTAKLNLYFGFLYVVAVTL 307 (308)
Q Consensus 249 ~~~~~~--~~~~~~ll~l-l~lp~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~ 307 (308)
+..... ..+..+...+ ...-......+.++. ++. .+--.+..+.|-..|.++..|+++
T Consensus 229 l~~~g~~~~l~~~y~~~~~~~~~~l~~~~~~~~~-~~~~~~~c~~~F~~n~~~G~~i~~g~~~ 290 (294)
T PRK12873 229 LALAAFIAQVGFIFWPFWLIASIGMQRDILKLFP-EKQSIKTIGNHFSNQVILGSLLLLGLIL 290 (294)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHhCc-CcccHHHHHHHHHhccHHHHHHHHHHHH
Confidence 443332 2233222222 222222233333433 221 122234668888899999888875
No 45
>PLN02878 homogentisate phytyltransferase
Probab=99.95 E-value=8.4e-26 Score=200.71 Aligned_cols=187 Identities=19% Similarity=0.163 Sum_probs=135.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCCCCceecccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhHH
Q psy14930 58 IILFVTLLTVISVHCAGNVVNTYYDYVLGIDTSRRSDDRTLVDHILSESELVSLGVMLYLVSSAGFILLSYISPAKMEHL 137 (308)
Q Consensus 58 ~~~ll~~l~~~~~~~~~n~~Ndy~D~~~g~D~~~~~~~r~l~~g~ls~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 137 (308)
...+.+.+++++++.....+|||||.| +| +.|+|+||+++|++|+++++.....+.++++.++.. .+. + .+
T Consensus 23 ~~~l~~~~~~l~~niyivglNd~~D~E--ID-kINkP~rPIpSG~iS~~~a~~~~~~~~~lg~~la~~----~g~-~-~l 93 (280)
T PLN02878 23 TGLLEALVPALLMNIYIVGLNQLYDIE--ID-KVNKPYLPLASGEFSVATGVAIVTSFAIMSFGMGWI----VGS-W-PL 93 (280)
T ss_pred HHHHHHHHHHHhhhhheechhhhhhhc--cc-ccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH----HCh-H-HH
Confidence 344667888999999999999999997 89 589999999999999999999888877766665533 221 1 12
Q ss_pred HHHHHHHHHHheeccC--CC-CCCcccchhHHHHHHHHHHHHHHHHHHh------cC--CCcHHHHHHHHHHHHHHHHHH
Q psy14930 138 AAVFFCGLSSSFLYSG--CL-GLKYTALGDVLILMIFGPITVLFAFMSQ------TG--RWEWATICYALPVALNTEAIL 206 (308)
Q Consensus 138 ~l~~~~~~~~~~~Ys~--~p-~lk~~~lge~~v~~~~G~l~~~~~~~~~------~~--~~~~~~~l~~l~~~l~~~~~~ 206 (308)
....+.++++++.||. || |+|+.++--....+.-+.+.+-.+++.. .+ ..+...+...+.+.+...++.
T Consensus 94 ~~al~~~~~lg~~YS~~lp~lr~k~~~~~aa~~i~~vr~~~v~l~~~~h~~~~~~g~~~~~~~~~~~~~~f~~~f~~~i~ 173 (280)
T PLN02878 94 FWALFVSFVLGTAYSINLPLLRWKRSAVAAASCILAVRAVVVQLAFFLHMQTHVLGRPAVFTRPLIFATAFMCFFSVVIA 173 (280)
T ss_pred HHHHHHHHHHHHHHHccCCCcccHHHHHHHHHHHHHHHHHHhhhhHHHhHHHHHhCCccccchhHHHHHHHHHHHHHHHH
Confidence 2222345577899996 77 9999886333333222222221222211 22 233344444445677788999
Q ss_pred hhcCCCChhhhHhcCCcccceeecchhhHHHHHHHHHHHHHHHHHHH
Q psy14930 207 HSNNTRDLESDRQVGIVTVAILLGQSYSHVYYAFLLFIPYIVFVVWG 253 (308)
Q Consensus 207 ~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~~~~~~~~~ 253 (308)
+.||+||+|+||+.|+||+|+++|+|++.++...+..++|+..+..+
T Consensus 174 i~KDi~DieGD~~~Gi~Tlpv~lG~~~~~~i~~~ll~~aY~~~i~~g 220 (280)
T PLN02878 174 LFKDIPDVEGDRIFGIRSFSVRLGQKRVFWLCVNLLEMAYAAAILVG 220 (280)
T ss_pred HHhhCcCchhHHHCCCceechhhChHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998655443
No 46
>PRK13591 ubiA prenyltransferase; Provisional
Probab=99.94 E-value=1.8e-24 Score=195.25 Aligned_cols=174 Identities=13% Similarity=0.053 Sum_probs=119.1
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCCCCceecccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCch
Q psy14930 54 QFSWIILFVTLLTVISVHCAGNVVNTYYDYVLGIDTSRRSDDRTLVDHILSESELVSLGVMLYLVSSAGFILLSYISPAK 133 (308)
Q Consensus 54 ~~~~~~~ll~~l~~~~~~~~~n~~Ndy~D~~~g~D~~~~~~~r~l~~g~ls~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 133 (308)
..++... +++.+...++|.+|||+|+| +| ..|+|+|+.+ +++.+...+.+. .++|+++.+..+
T Consensus 58 ~~~~~~~----~~~~L~~~s~~~iNd~~D~e--iD-~IN~P~r~~~----s~~~a~~ls~la----~llGl~La~~~g-- 120 (307)
T PRK13591 58 QSSILTC----IAGGLIIYSVYTLDRALDSE--ED-AVNRSELIGS----NKKIGLLVSLLA----FLLGTYILAMDG-- 120 (307)
T ss_pred CcchHHH----HHHHHHHHHHHHHhhhccch--hh-hccCcccccc----CHHHHHHHHHHH----HHHHHHHHHHHh--
Confidence 4555443 34456677899999999998 68 4678899875 666665554444 444544444433
Q ss_pred hhHHHHHHHHHHHHheeccCC----C-CC--C-cccchhHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH---
Q psy14930 134 MEHLAAVFFCGLSSSFLYSGC----L-GL--K-YTALGDVLILMIFGPITVLFAFMSQTGRWEWATICYALPVALNT--- 202 (308)
Q Consensus 134 ~~~~~l~~~~~~~~~~~Ys~~----p-~l--k-~~~lge~~v~~~~G~l~~~~~~~~~~~~~~~~~~l~~l~~~l~~--- 202 (308)
+ .++.+.+.+.++.||.+ | ++ | +.|+||+.+++.+|.+++.+.... ++. +....+.++..
T Consensus 121 ~---~ll~ll~~l~g~lYS~Glk~~P~plklK~~~glGnl~V~i~~G~~i~g~~g~~-~~~-----~~~~~~i~l~~~~~ 191 (307)
T PRK13591 121 M---LLLAFLPFITGYLYSKGIKIGKFALKLKGGLGVKNIVVGITWGGFIAGIAGSY-CGS-----LIPVGLIFLFFGVK 191 (307)
T ss_pred H---HHHHHHHHHHHHHhcCCCCCCCccccccCCCchhHHHHHHHHHHHHHHHHHhh-hhh-----HHHHHHHHHHHHHH
Confidence 1 12334456679999985 4 44 4 446899999999998665331111 111 12222333333
Q ss_pred -HHHHhhcCCCChhhhHhcCCcccceeecchhhHHHHHHHHHHHHHHHHHHH
Q psy14930 203 -EAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVYYAFLLFIPYIVFVVWG 253 (308)
Q Consensus 203 -~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~~~~~~~~~ 253 (308)
.....+||+||+|+|+++|+||+|+++|+++|++++..+.+++++..+...
T Consensus 192 l~~~~iindirDiEGDr~~G~kTLPV~lG~~~A~~l~~~l~~~~~l~li~~~ 243 (307)
T PRK13591 192 LFINSCVYDFKDVKGDTLAGIKTLPVSLGEQKTRNLLLGIHLFSHLVLGIAL 243 (307)
T ss_pred HHHHHHHHHhhhhHhHHHcCCeeEEEEECHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445578999999999999999999999999999999999999998776554
No 47
>PLN02776 prenyltransferase
Probab=99.92 E-value=1e-22 Score=187.13 Aligned_cols=258 Identities=17% Similarity=0.142 Sum_probs=182.0
Q ss_pred hchhHHHHHHHHHHHHHHHHhhhCCCcccccHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCC-CCCCCCceecccCC
Q psy14930 26 LRPWSLSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHCAGNVVNTYYDYVLGIDTS-RRSDDRTLVDHILS 104 (308)
Q Consensus 26 ~Rp~~l~~~~~~~~~g~~la~~~~g~~~~~~~~~~ll~~l~~~~~~~~~n~~Ndy~D~~~g~D~~-~~~~~r~l~~g~ls 104 (308)
+||+.....++....|..+|.. + ..++..+++.++++++..+++|.+|||+|+| +|+. +|+++||+++|++|
T Consensus 2 ~Kpri~~lv~~ta~~G~~lA~~--~---~~~~~~l~~~~lg~~l~~aaa~~~N~i~Drd--iD~~m~RT~~RPLpsGris 74 (341)
T PLN02776 2 SKARLSALVVATSGAGFVLGSG--E---AIDLPGLGWTCAGTMLCAASANTLNQVFEVK--NDSKMKRTMRRPLPSGRIS 74 (341)
T ss_pred CcchhHHHHHHHHHHHHHHhcC--C---CCCHHHHHHHHHHHHHHHHHHHHHHhHHhhh--hcccCCCCCCCCCCCCCCC
Confidence 5788888888899999998842 3 5677788888999999999999999999997 7865 67899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHH-HHHheeccCCCCCCcccchhHHHHHHHHHHHHHHHHHHh
Q psy14930 105 ESELVSLGVMLYLVSSAGFILLSYISPAKMEHLAAVFFCG-LSSSFLYSGCLGLKYTALGDVLILMIFGPITVLFAFMSQ 183 (308)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~-~~~~~~Ys~~p~lk~~~lge~~v~~~~G~l~~~~~~~~~ 183 (308)
+++++.++..+.++++.+. .+..+ .. ...+.+.+ +.....||. +|++...+..++...|.++++++|.+.
T Consensus 75 ~~~A~~~~~~l~~~g~~~l---~~~~n--~l-~~~l~~~~~~ly~~vYt~---lKR~t~~~~~lG~~~Ga~ppL~Gw~Av 145 (341)
T PLN02776 75 VPHAVAWAVVVGAAGVALL---AYKTN--ML-TAGLGAGNILLYAFVYTP---LKQIHPANTWVGAVVGAIPPLMGWAAA 145 (341)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHh--HH-HHHHHHHHHHHHHHHHHh---HccCCchhHHHHHHHHHHHHHHHHHHH
Confidence 9999998888766555321 11111 11 12222222 334567883 788887788889999988999999999
Q ss_pred cCCCcHHHHHHHHHHHHHHHHHHhhcCCCChhhhHhcCCcccceee--cchhhHHHHHHHHHHHHHHHHHHHHH--HHHH
Q psy14930 184 TGRWEWATICYALPVALNTEAILHSNNTRDLESDRQVGIVTVAILL--GQSYSHVYYAFLLFIPYIVFVVWGMN--HSYY 259 (308)
Q Consensus 184 ~~~~~~~~~l~~l~~~l~~~~~~~~~~~~D~e~D~~~G~~Tl~v~l--G~~~a~~l~~~l~~~~~~~~~~~~~~--~~~~ 259 (308)
+|++++.++++.....+|+....+.-.+.|.|+|+++|.+.+|+.- |++.++......+.+..+.++..... ...+
T Consensus 146 tg~~~~~~~~Lf~~~~~Wq~pHf~~la~~~~dDy~~ag~pmlpv~~~~g~~ta~~i~~~~~~l~~~~ll~~~~g~~~~~~ 225 (341)
T PLN02776 146 SGQLDAGAMVLAAALYFWQMPHFMALAYMCRDDYAAGGYRMLSLADATGRRTALVALRNCLYLAPLGFLAYDWGVTSSPF 225 (341)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCCcccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 9999999999999999999998888889999999999999999866 46666665544444433333322222 2223
Q ss_pred HHH-HHHHHHHHHHHHHHhcCCccccccHHHHHHHHHHHHHHHHHHH
Q psy14930 260 YLL-PLVTLKSAFSIEKQFRCPDKIHLVPKLTAKLNLYFGFLYVVAV 305 (308)
Q Consensus 260 ~ll-~ll~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l 305 (308)
.+. ..+.....+...+.+++ ++ ...++-.+..++.++..+
T Consensus 226 ~~~a~~l~~~~l~~~~~~~~~-~~-----~~~ar~~F~~Sl~yL~~l 266 (341)
T PLN02776 226 ALEAALLTAYLAASAASFYRE-PT-----NANARKMFHGSLLYLPAF 266 (341)
T ss_pred HHHHHHHHHHHHHHHHHHhcC-CC-----hHHHHHHHHHHHHHHHHH
Confidence 222 23344444444455543 23 223455555555555443
No 48
>COG0109 CyoE Polyprenyltransferase (cytochrome oxidase assembly factor) [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1.1e-23 Score=187.81 Aligned_cols=251 Identities=18% Similarity=0.195 Sum_probs=197.4
Q ss_pred ccccHHHHHHhhchhHHHHHHHHHHHHHHHHhhhCCCcccccHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCC-CCC
Q psy14930 15 LQEKLSSYLLALRPWSLSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHCAGNVVNTYYDYVLGIDTS-RRS 93 (308)
Q Consensus 15 ~~~~~~~~l~~~Rp~~l~~~~~~~~~g~~la~~~~g~~~~~~~~~~ll~~l~~~~~~~~~n~~Ndy~D~~~g~D~~-~~~ 93 (308)
.++++|+|++++||+.....+.+...|..+|.+ + ..++...+.+.++..+...++|.+|.|+|+| +|+. +|+
T Consensus 14 ~~~~~k~yl~LtKPrvi~L~~it~~~g~~lA~~--~---~~~~~l~~~~~~g~~L~a~~a~a~N~~~DrD--ID~~M~RT 86 (304)
T COG0109 14 SRSTIKDYLQLTKPRVISLLLITAFAGMLLAPR--G---SINPLLLLLTLLGGALGAGGAGAFNMYIDRD--IDALMERT 86 (304)
T ss_pred hHHHHHHHHHHhCCeeeehHHHHHHHHHHHccc--c---cccHHHHHHHHHHHHHHHHHHHHHhhhhhhh--HHHhhhhc
Confidence 567899999999999999999999999999976 4 7899999999999999999999999999986 8975 688
Q ss_pred CCCceecccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHheeccCCCCCCcccchhHHHHHHHHH
Q psy14930 94 DDRTLVDHILSESELVSLGVMLYLVSSAGFILLSYISPAKMEHLAAVFFCGLSSSFLYSGCLGLKYTALGDVLILMIFGP 173 (308)
Q Consensus 94 ~~r~l~~g~ls~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~Ys~~p~lk~~~lge~~v~~~~G~ 173 (308)
.+||+++|+++|+|+..++..+.+++..... +..+ +....+..++.+.....||. .+||+-.-|++++..-|.
T Consensus 87 ~~RP~~~G~i~p~~al~fgl~L~~~g~~~l~---~~vn--~laa~l~~~gi~~Yv~vYT~--~lKR~T~~NiviGg~aGa 159 (304)
T COG0109 87 RKRPLVTGLISPREALAFGLVLGVAGFSLLW---FLVN--LLAAVLGLFGIFFYVVVYTL--WLKRRTPQNIVIGGFAGA 159 (304)
T ss_pred cCCCCCCCccCHHHHHHHHHHHHHHHHHHHH---HHHH--HHHHHHHHHHHHHHhhhhhh--hccCCcccceeeeecccc
Confidence 9999999999999999999888766655431 1111 11122333445567888997 589998889999888999
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHhhcCCCChhhhHhcCCcccceeecchhhHHHHHHHHHHHHHHHHHHH
Q psy14930 174 ITVLFAFMSQTGRWEWATICYALPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVYYAFLLFIPYIVFVVWG 253 (308)
Q Consensus 174 l~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~~~~~~~~~ 253 (308)
.+++.+|.+.+|+++++++++...+++|+..+.++-.++-.|+.+++|...+|+.-|++.+++......++.....+...
T Consensus 160 ~PpliGwaAvtg~~~~~a~~Lf~IiF~WtPpHfwALAl~~~~DY~~AgiPMlPvv~G~~~t~~~I~~y~~~l~~~sl~~~ 239 (304)
T COG0109 160 MPPLIGWAAVTGSISLGAILLFAIIFLWTPPHFWALALKYKDDYKAAGIPMLPVVKGERRTKRQILLYTLALAPVSLLLA 239 (304)
T ss_pred ccccceeeeeeCCCCchHHHHHHHHHHhccHHHHHHHHHHHHHHHHcCCCcccccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999888888999999999999999999999888865444333332222222
Q ss_pred -HHHH--HHHH-HHHHHHHHHHHHHHHhcC
Q psy14930 254 -MNHS--YYYL-LPLVTLKSAFSIEKQFRC 279 (308)
Q Consensus 254 -~~~~--~~~l-l~ll~lp~~~~~~~~~~~ 279 (308)
.+.. .+.. ..++.........+.+++
T Consensus 240 ~~g~~g~~Y~v~a~~l~~~~l~~a~~~~~~ 269 (304)
T COG0109 240 LLGYVGYLYLVVATLLGAWFLALAWKLYRK 269 (304)
T ss_pred HhccchhHHHHHHHHHHHHHHHHHHHHHhC
Confidence 2222 2322 334566666666676665
No 49
>PRK13592 ubiA prenyltransferase; Provisional
Probab=99.90 E-value=1.9e-21 Score=174.26 Aligned_cols=230 Identities=14% Similarity=0.096 Sum_probs=144.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCCCCceecccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCchhh
Q psy14930 56 SWIILFVTLLTVISVHCAGNVVNTYYDYVLGIDTSRRSDDRTLVDHILSESELVSLGVMLYLVSSAGFILLSYISPAKME 135 (308)
Q Consensus 56 ~~~~~ll~~l~~~~~~~~~n~~Ndy~D~~~g~D~~~~~~~r~l~~g~ls~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 135 (308)
.....+++.+++++...++|++|||+|+| +| ..++|+||+|+|++|+++++.++..+.+++..++... ..
T Consensus 44 ~~~~~~l~~~~vf~~~~~gniiNDy~D~E--ID-rIN~P~RPLPsG~VS~~~A~~~si~L~~~~l~L~~l~-~i------ 113 (299)
T PRK13592 44 IGIQEFVGVFTVFGFWMILRIADDFKDYE--TD-RRLFPHRALPSGRVKKKDLAIALSFIVAVSVLLNVLF-MN------ 113 (299)
T ss_pred CchHHHHHHHHHHHHHHHhHHHHHHhhHH--Hh-hhcCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHH-HH------
Confidence 45566777888888999999999999998 78 5799999999999999999999888766555554332 00
Q ss_pred HHHHHHHHHHHHheec-----cCCCCCCcccc-hhHHHHHHHHHHHHHH------HHHHh-cCCCc--HHHHHHHHHHHH
Q psy14930 136 HLAAVFFCGLSSSFLY-----SGCLGLKYTAL-GDVLILMIFGPITVLF------AFMSQ-TGRWE--WATICYALPVAL 200 (308)
Q Consensus 136 ~~~l~~~~~~~~~~~Y-----s~~p~lk~~~l-ge~~v~~~~G~l~~~~------~~~~~-~~~~~--~~~~l~~l~~~l 200 (308)
.+ ...+..+.| +. ++|+.++ |++.++...|.....+ .+... .+... ...+.+++...+
T Consensus 114 --~i---~~~~i~~lY~~lm~a~--~~K~~~l~gNl~Va~ltg~~f~~g~~~~~~~fg~~~~g~~~~~~~~~~l~l~afl 186 (299)
T PRK13592 114 --NV---GWFLFLYIYGTLMSFW--FFKRDKIQNSLPLALVTHNPVMMILNLYTISFVCYKYNLPLLSLPTVLLAFTMYF 186 (299)
T ss_pred --HH---HHHHHHHHHHHHHHHH--HHcccCCCcchhhhhhccchhhhchhhhhhhhhhhhcccchhhHHHHHHHHHHHH
Confidence 00 111223334 44 6888885 9999987777433222 11111 12111 112455566667
Q ss_pred HHHHHHhhcCCCChhhhHhcCCcccceeecchhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH-HHHHHhc
Q psy14930 201 NTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVYYAFLLFIPYIVFVVWGMNHSYYY-LLPLVTLKSAF-SIEKQFR 278 (308)
Q Consensus 201 ~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~~~~~~~~~~~~~~~~-ll~ll~lp~~~-~~~~~~~ 278 (308)
...+.+..+|++| |+|++ |.+|+|+++|.|+|.++...+.++..+...+..+..+.+. ....+...... ...+.++
T Consensus 187 ~~l~rEI~KdieD-~gd~~-~~~Tlpi~~G~kkA~~ia~~l~ii~v~~s~lp~~~~g~~g~~~l~~~~~~~l~~~~~~lk 264 (299)
T PRK13592 187 PSLIWEVCRKIRA-PKDET-EYVTYSKLFGYKKATRFIEVVTLLDILTNFALLWNISHVGVVVLVLNVIWMTVQFEQFIK 264 (299)
T ss_pred HHHHHHHHHhhcC-Ccccc-CCeeechhccchhHHHHHHHHHHHHHHHhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHhc
Confidence 7889999999999 88885 5999999999999999988877766654322111111111 11122233333 3344555
Q ss_pred CCccc--cccHHHHHHHHHHHHHHHHHH
Q psy14930 279 CPDKI--HLVPKLTAKLNLYFGFLYVVA 304 (308)
Q Consensus 279 ~~~~~--~~~~~~~~~~~~~~~~l~~~~ 304 (308)
+|++. .+..++..|..+..+++-.++
T Consensus 265 ~p~~~~~~~~~~~~~ki~~~l~~la~~~ 292 (299)
T PRK13592 265 SPTRFNIRERVERYTYITETTMVLSVAV 292 (299)
T ss_pred CCCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 54221 123445567666666554443
No 50
>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional
Probab=99.78 E-value=2.4e-16 Score=143.27 Aligned_cols=194 Identities=21% Similarity=0.095 Sum_probs=119.3
Q ss_pred ccccHHHHHHhhchhHHHHHHHHHHHHHHHHhhhCCCcccccHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCC-CCC
Q psy14930 15 LQEKLSSYLLALRPWSLSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHCAGNVVNTYYDYVLGIDTS-RRS 93 (308)
Q Consensus 15 ~~~~~~~~l~~~Rp~~l~~~~~~~~~g~~la~~~~g~~~~~~~~~~ll~~l~~~~~~~~~n~~Ndy~D~~~g~D~~-~~~ 93 (308)
.++++++|++++||+.+......+. +...+..... ..++...++++++..+...++|.+||++|+| .|+. +++
T Consensus 7 ~~~~l~~~l~L~RP~~w~~nll~~~-~~~~a~~~~~---~~~~~~~llafl~~~l~~sa~y~iND~~D~e--~Dr~~prk 80 (295)
T PRK12324 7 PKNLLAGYLKLLRPKQWIKNLFVFA-APIFAGNLLN---PGALLKVLLAFVLFCLASSAVYLVNDIRDVE--ADRLHPTK 80 (295)
T ss_pred hHHHHHHHHHHhCchHHHHHHHHHH-HHHHHHhhcc---cchHHHHHHHHHHHHHHHHHHHHHHhHHHHH--hhccCCCC
Confidence 4557999999999998877666333 4444433211 2235566677777778889999999999998 5764 578
Q ss_pred CCCceecccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHheeccCCCCCCcccc-hhHHHHHHHH
Q psy14930 94 DDRTLVDHILSESELVSLGVMLYLVSSAGFILLSYISPAKMEHLAAVFFCGLSSSFLYSGCLGLKYTAL-GDVLILMIFG 172 (308)
Q Consensus 94 ~~r~l~~g~ls~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~Ys~~p~lk~~~l-ge~~v~~~~G 172 (308)
++||+++|++|++++..++.++..+++.++..+ ++ . ...+.++.++..+.||. ++|++++ +.+.++..++
T Consensus 81 ~~RPlasG~is~~~A~~~~~~l~~~~l~la~~l---~~---~-~~~~~~~~~~~~~~Ys~--~lK~~~~~d~l~va~~~~ 151 (295)
T PRK12324 81 RNRPIASGVVSVSLAYILAVVLLVASLALAYLL---SP---K-LALVLLVYLVLNLAYSF--KLKHQPVLDVFCIASGFV 151 (295)
T ss_pred CCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHH---HH---H-HHHHHHHHHHHHHHhhH--HhcCCchhhHHHHHHHHH
Confidence 999999999999999998888777666554322 11 1 12222344566788997 6899985 5666666666
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHhhcCCCChhhhHhcCCcc
Q psy14930 173 PITVLFAFMSQTGRWEWATICYALPVALNTEAILHSNNTRDLESDRQVGIVT 224 (308)
Q Consensus 173 ~l~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~D~e~D~~~G~~T 224 (308)
.-...| ..+...+.+...+..+...+++....---.+.++.++|.+..|++
T Consensus 152 lr~~~G-~~a~~~~~s~wll~~~~~~~lfla~~kR~~E~~~~~~~~~~~r~~ 202 (295)
T PRK12324 152 LRAIAG-GVAIGVPLSPWLLLCTALLSLFLAAGKRKAELRLLEDTGAKHRKV 202 (295)
T ss_pred HHHHHH-HHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccc
Confidence 534334 333333333222222222222223223334455555554443433
No 51
>PRK08238 hypothetical protein; Validated
Probab=99.72 E-value=6.5e-15 Score=142.55 Aligned_cols=192 Identities=16% Similarity=0.117 Sum_probs=132.1
Q ss_pred hhhccccHHHHHHhhchhHHHHHHHHHHHHHHHHhhhCCCcccccHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCC-
Q psy14930 12 FTMLQEKLSSYLLALRPWSLSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHCAGNVVNTYYDYVLGIDTS- 90 (308)
Q Consensus 12 l~~~~~~~~~~l~~~Rp~~l~~~~~~~~~g~~la~~~~g~~~~~~~~~~ll~~l~~~~~~~~~n~~Ndy~D~~~g~D~~- 90 (308)
+++.+.++++|++++||+.+.-.++. .++.+.+..... ...+...++++++..+...++|++|||+|+| .|+.
T Consensus 184 ~~~~~~~~~~~~~l~Rp~q~~kn~l~-~~p~l~a~~~~~---~~~~~~~~~~f~~~~l~~sa~~~~ND~~D~e--~Dr~~ 257 (479)
T PRK08238 184 FPPRPARLRTWLKALRVHQWAKNLLV-FVPLLAAHQFGD---LQALLAALLAFLAFSLCASAVYILNDLLDLE--ADRAH 257 (479)
T ss_pred cCCCchHHHHHHHHhCCcHHHHHHHH-HHHHHHhcccCC---hHHHHHHHHHHHHHHHHHHHHHHHHhhHHhh--hhccC
Confidence 34556678999999999998777665 336665532111 1235566778888889999999999999997 6864
Q ss_pred CCCCCCceecccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHheeccCCCCCCcccc-hhHHHHH
Q psy14930 91 RRSDDRTLVDHILSESELVSLGVMLYLVSSAGFILLSYISPAKMEHLAAVFFCGLSSSFLYSGCLGLKYTAL-GDVLILM 169 (308)
Q Consensus 91 ~~~~~r~l~~g~ls~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~Ys~~p~lk~~~l-ge~~v~~ 169 (308)
+++++||+++|++|++++..++.+++.+++.++.. .+. ....+.++.++....||. ++|++++ +.+..++
T Consensus 258 ~rk~~RPlasG~is~~~A~~~~~~l~~~~~~l~~~----l~~---~~~~~~~~~~~~~~~Ys~--~lKr~~~~~~~~la~ 328 (479)
T PRK08238 258 PRKRRRPFASGALPIPFGLAAAPLLLLAGLALALA----LGP---AFLLVLLAYLALTLAYSL--RLKRKVLVDVLTLAA 328 (479)
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH----HhH---HHHHHHHHHHHHHHHhhH--HhcCCccccchHHHH
Confidence 57899999999999999999888877766654432 121 112223344556778996 5899885 6677777
Q ss_pred HHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHhhcCCCChhhhHhcCC
Q psy14930 170 IFGPITVLFAFMSQTGRWEWATICYALPVALNTEAILHSNNTRDLESDRQVGI 222 (308)
Q Consensus 170 ~~G~l~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~D~e~D~~~G~ 222 (308)
.++.-++.| +.+. ..+...|++.+.+ ++.....+.+-..|.+.++..|+
T Consensus 329 ~~~lr~~~G-~~a~--~~~~s~wll~~~~-~~~l~la~~KR~~El~~~~~~~~ 377 (479)
T PRK08238 329 LYTLRIIAG-AAAI--GVALSFWLLAFSM-FFFLSLALVKRYTELRRALQRGK 377 (479)
T ss_pred HHHHHHHHH-HHHh--ccCHHHHHHHHHH-HHHHHHHHHHhHHHHHHHHhcCC
Confidence 776544444 3332 2556666654433 44555567788888888888886
No 52
>KOG1381|consensus
Probab=99.65 E-value=6e-16 Score=134.68 Aligned_cols=216 Identities=15% Similarity=0.066 Sum_probs=145.3
Q ss_pred hhhhhhccccHHHHHHhhchhH---HHHHHHHHHHHHHHHhhhCCCcccccHHHHHHHHHHHHHHHHHHHHhhhhhhhhc
Q psy14930 9 NIWFTMLQEKLSSYLLALRPWS---LSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHCAGNVVNTYYDYVL 85 (308)
Q Consensus 9 ~~~l~~~~~~~~~~l~~~Rp~~---l~~~~~~~~~g~~la~~~~g~~~~~~~~~~ll~~l~~~~~~~~~n~~Ndy~D~~~ 85 (308)
+.|.++.+++++.|.|++|... --.-..|+....++|... | ...+.....+.-.+.+++..+++.+||..|.+
T Consensus 54 ss~~~~~p~r~~pYaqLmRldkPiGTwLLywPCtWSIamaAda-g--~~p~~~mL~LFG~GAllMRgAGCtINDlwDkd- 129 (353)
T KOG1381|consen 54 SSLVASSPKRWKPYAQLMRLDKPIGTWLLYWPCTWSIAMAADA-G--LLPSIKMLALFGVGALLMRGAGCTINDLWDKD- 129 (353)
T ss_pred hhhhhcCCccchhHHHHHhcCCCceeeeeecchHHHHHhccCC-C--ccchhHHHHHhcccHHHhccCCceehhhhhhh-
Confidence 4567778889999999999532 223357888888887643 3 13345555556667899999999999999986
Q ss_pred ccCCC-CCCCCCceecccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHheeccCCCCCCcccchh
Q psy14930 86 GIDTS-RRSDDRTLVDHILSESELVSLGVMLYLVSSAGFILLSYISPAKMEHLAAVFFCGLSSSFLYSGCLGLKYTALGD 164 (308)
Q Consensus 86 g~D~~-~~~~~r~l~~g~ls~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~Ys~~p~lk~~~lge 164 (308)
+|.+ +|++.||+.+|++|++|+..+-...+.+++.+ +.-.... -..+...++...+.|+..+|+.|.| +
T Consensus 130 -lD~KVeRtklRPlAsG~ls~~qaI~fL~~ql~~gLgi---LlqLn~y----si~lg~~sl~~v~~ypl~kr~TY~p--q 199 (353)
T KOG1381|consen 130 -LDAKVERTKLRPLASGSLSPRQAIGFLGAQLSLGLGI---LLQLNWY----SIALGASSLALVITYPLMKRFTYWP--Q 199 (353)
T ss_pred -hhhhHhhhcccccccCCcchhHHHHHHHHHHHHhHHH---HHhccHH----HHHhcccccccEEEeehhhhcchhH--H
Confidence 7865 68899999999999999876544433333221 1112221 1122223455677888755666665 3
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCcHHH-HHHHHHHHHHHHHHHhhcCCCChhhhHhcCCcccceeecchhhHHHHH
Q psy14930 165 VLILMIFGPITVLFAFMSQTGRWEWAT-ICYALPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVYYA 239 (308)
Q Consensus 165 ~~v~~~~G~l~~~~~~~~~~~~~~~~~-~l~~l~~~l~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~l~~ 239 (308)
.+.+..|+.-..+| |.+..|+..... +-+-+-...|+.....+...+|.++|.+.|+|+.+.|+|++.-.++..
T Consensus 200 ~vLgltfnwGAllG-w~A~~g~~~~s~~~plYls~v~Wtl~YDTIYAHQDK~dDvk~gvkSTALrfG~nTK~wl~g 274 (353)
T KOG1381|consen 200 LVLGLTFNWGALLG-WCALKGSLSPSAVLPLYLSGVCWTLIYDTIYAHQDKRDDVKIGVKSTALRFGDNTKPWLSG 274 (353)
T ss_pred HHHhhhcchhhhhc-chhhcCccChhhhhHHHHhhhhhhhhhhhhhhcccchhhhHhcchhhhhhcCCCCchHHhh
Confidence 34455555555444 556666655432 222333446788888999999999999999999999999886666543
No 53
>KOG1380|consensus
Probab=99.38 E-value=2.6e-13 Score=121.04 Aligned_cols=212 Identities=17% Similarity=0.140 Sum_probs=154.2
Q ss_pred ccHHHHHHhhchhHHHHHHHHHHHHHHHHhhhCCCcccccHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCC-CCCCC
Q psy14930 17 EKLSSYLLALRPWSLSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHCAGNVVNTYYDYVLGIDTS-RRSDD 95 (308)
Q Consensus 17 ~~~~~~l~~~Rp~~l~~~~~~~~~g~~la~~~~g~~~~~~~~~~ll~~l~~~~~~~~~n~~Ndy~D~~~g~D~~-~~~~~ 95 (308)
..++.|+|+.+|+.-...++....|.++|- + .+++..++.+.++..+..+++|.+|++++-. .|.+ .|+..
T Consensus 92 k~~~~y~eLsK~rLT~LVV~tt~~gYalap---~---p~s~~~l~~~tvGT~L~S~sANaiNQ~~E~~--~DsqM~RT~~ 163 (409)
T KOG1380|consen 92 KYARCYLELSKPRLTMLVVLTTMTGYALAP---G---PFSFPTLLYTTVGTGLCSASANAINQIFEPP--FDSQMKRTQN 163 (409)
T ss_pred chHHHHHHhcccceEEEEeeeccccccccc---c---CCCcchhHHHhhhhHHHHhhhHhhhhhccCC--chhhhHhhcc
Confidence 357899999999987777777788888773 4 6899999999999999999999999999987 4654 57889
Q ss_pred CceecccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHHH-HHHHheeccCCCCCCcccchhHHHHHHHHHH
Q psy14930 96 RTLVDHILSESELVSLGVMLYLVSSAGFILLSYISPAKMEHLAAVFFC-GLSSSFLYSGCLGLKYTALGDVLILMIFGPI 174 (308)
Q Consensus 96 r~l~~g~ls~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~-~~~~~~~Ys~~p~lk~~~lge~~v~~~~G~l 174 (308)
||+++|++||.+++.++.+.-..+..+ +.+.... . .+.+..+ .++.+..|| ++|+.-..+-.++-..|.+
T Consensus 164 Rplv~g~isp~hA~~fAt~~g~~G~sl---L~~gvNp--l-~a~Lga~Ni~LY~~vYT---PlKrihiinTWvGavVGAI 234 (409)
T KOG1380|consen 164 RPLVRGRISPLHAVTFATLTGTAGVSL---LAFGVNP--L-AAALGAGNIFLYAGVYT---PLKRIHIINTWVGAVVGAI 234 (409)
T ss_pred cccccCccChHHHHHHHHHhcccccee---eeecccH--H-HHHHhhcchheeecccc---chhhhhhhhhHHHHHhccC
Confidence 999999999999988776553322211 1121221 1 1222222 233566777 6899888999999999999
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHhhcCCCChhhhHhcCCcccceee---cchhhHHHHHHHHHHH
Q psy14930 175 TVLFAFMSQTGRWEWATICYALPVALNTEAILHSNNTRDLESDRQVGIVTVAILL---GQSYSHVYYAFLLFIP 245 (308)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~D~e~D~~~G~~Tl~v~l---G~~~a~~l~~~l~~~~ 245 (308)
+++.+|.+.+|..+...++++-....|-......-...=+++.+++|.|-.++.= -++.|.+....+.-++
T Consensus 235 PPLMGwAAasg~l~~ga~iLa~~LyaWQfPHFnaLS~~lR~DYs~~GY~Mma~~np~l~rr~alr~s~a~~~L~ 308 (409)
T KOG1380|consen 235 PPLMGWAAASGLLDPGAMILAGILYAWQFPHFNALSWNLRNDYSKAGYRMMAVTNPGLCRRVALRYSLAFLPLS 308 (409)
T ss_pred CccchhhhhccCCCccHHHHHHHHHHhcccchhhhhhhhchhhhhccEEEEEeeccchhhHHHHHHHHHHhhhh
Confidence 9999999999999888888777777777666544444456778889999888753 3444555444444333
No 54
>PRK12884 ubiA prenyltransferase; Reviewed
Probab=95.24 E-value=1.1 Score=40.48 Aligned_cols=38 Identities=21% Similarity=0.057 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHhhcCCCChhhhHhcCCcccceeecc
Q psy14930 193 CYALPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQ 231 (308)
Q Consensus 193 l~~l~~~l~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~ 231 (308)
+..+...+...+....||+.|+|.|+++ |+.=|..-|+
T Consensus 41 l~~l~~~l~~~a~~~~Nd~~D~~~D~~~-r~~Rpl~~G~ 78 (279)
T PRK12884 41 LGFLTAFFASGSANALNDYFDYEVDRIN-RPDRPIPSGR 78 (279)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHhhhhcc-CCCCCCCCCC
Confidence 3344455566777889999999999999 6777777774
No 55
>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]
Probab=94.89 E-value=1.5 Score=40.00 Aligned_cols=41 Identities=22% Similarity=0.073 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCChhhhHhcCC-cccceeecc
Q psy14930 191 TICYALPVALNTEAILHSNNTRDLESDRQVGI-VTVAILLGQ 231 (308)
Q Consensus 191 ~~l~~l~~~l~~~~~~~~~~~~D~e~D~~~G~-~Tl~v~lG~ 231 (308)
..+..+.+.+...+....||+.|+|-||++-+ |.=|.-=|+
T Consensus 49 ~~l~~l~~~~~~~ag~~iND~~D~eiD~~n~rt~~RPl~sG~ 90 (289)
T COG0382 49 LLLAFLAFFLARSAGYVINDLADREIDRINPRTKNRPLPSGR 90 (289)
T ss_pred HHHHHHHHHHHHHHhHHHHHHhhhhccCCCCCccCCCCCCCC
Confidence 34455556667788889999999999999887 455555553
No 56
>PRK13595 ubiA prenyltransferase; Provisional
Probab=94.15 E-value=3.9 Score=37.42 Aligned_cols=21 Identities=24% Similarity=0.088 Sum_probs=17.5
Q ss_pred HHHHhhcCCCChhhhHhcCCc
Q psy14930 203 EAILHSNNTRDLESDRQVGIV 223 (308)
Q Consensus 203 ~~~~~~~~~~D~e~D~~~G~~ 223 (308)
....-+||.-|+|.|+++.++
T Consensus 61 ~~~~giND~fD~eiDa~Npr~ 81 (292)
T PRK13595 61 LLIYGLNDLADRETDAASPRK 81 (292)
T ss_pred HHHHHHHhhhhhhhhccCCCC
Confidence 455778999999999988766
No 57
>PRK12882 ubiA prenyltransferase; Reviewed
Probab=93.72 E-value=1.3 Score=40.13 Aligned_cols=52 Identities=23% Similarity=0.035 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHhhcCCCChhhhHhcCCcccceeec---chhhHHHHHHHHHHHH
Q psy14930 194 YALPVALNTEAILHSNNTRDLESDRQVGIVTVAILLG---QSYSHVYYAFLLFIPY 246 (308)
Q Consensus 194 ~~l~~~l~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG---~~~a~~l~~~l~~~~~ 246 (308)
..+...+...+....||.-|+|.|+.+. ++=|..-| ++.+..+...+..++.
T Consensus 43 ~~l~~~l~~~~~~~~Nd~~D~~iD~~~~-~~Rpl~~G~is~~~a~~~~~~l~~~g~ 97 (276)
T PRK12882 43 AFAAVFLATGAGNAINDYFDREIDRINR-PDRPIPSGAVSPRGALAFSILLFAAGV 97 (276)
T ss_pred HHHHHHHHHHHHHHHHHHhhhccccccC-CCCCcCCCCcCHHHHHHHHHHHHHHHH
Confidence 3344445566778899999999999754 55555555 4455554444444443
No 58
>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed
Probab=93.67 E-value=4.3 Score=36.77 Aligned_cols=52 Identities=19% Similarity=0.129 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHhhcCCCChhhhHhcCCcccce---eecchhhHHHHHHHHHHHH
Q psy14930 194 YALPVALNTEAILHSNNTRDLESDRQVGIVTVAI---LLGQSYSHVYYAFLLFIPY 246 (308)
Q Consensus 194 ~~l~~~l~~~~~~~~~~~~D~e~D~~~G~~Tl~v---~lG~~~a~~l~~~l~~~~~ 246 (308)
..+...+...+....||+-|+|.|+.+. ++=|. ++.++.+..+...+..++.
T Consensus 42 ~~l~~~l~~~~~~~iNd~~D~~iD~~~~-~~Rpl~sG~is~~~a~~~~~~l~~~~~ 96 (279)
T PRK09573 42 AALVVFLVCAGGNVINDIYDIEIDKINK-PERPIPSGRISLKEAKIFSITLFIVGL 96 (279)
T ss_pred HHHHHHHHHHHHHHHHhhcccccccccC-CCCCcCCCccCHHHHHHHHHHHHHHHH
Confidence 3444556667778999999999999764 33344 4445555555544444443
No 59
>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional
Probab=93.07 E-value=6.5 Score=36.07 Aligned_cols=50 Identities=24% Similarity=0.299 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHhhcCCCChhhhHhcC-Ccccce---eecchhhHHHHHHHHHHH
Q psy14930 196 LPVALNTEAILHSNNTRDLESDRQVG-IVTVAI---LLGQSYSHVYYAFLLFIP 245 (308)
Q Consensus 196 l~~~l~~~~~~~~~~~~D~e~D~~~G-~~Tl~v---~lG~~~a~~l~~~l~~~~ 245 (308)
+.+.+...+....||+.|+|.||++- ||.=|. ++.++.+..+...+..++
T Consensus 53 l~~~l~~sa~y~iND~~D~e~Dr~~prk~~RPlasG~is~~~A~~~~~~l~~~~ 106 (295)
T PRK12324 53 VLFCLASSAVYLVNDIRDVEADRLHPTKRNRPIASGVVSVSLAYILAVVLLVAS 106 (295)
T ss_pred HHHHHHHHHHHHHHhHHHHHhhccCCCCCCCCCCCCccCHHHHHHHHHHHHHHH
Confidence 33445566778999999999999973 233333 344555555444444433
No 60
>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]. These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane
Probab=92.36 E-value=2.9 Score=36.80 Aligned_cols=51 Identities=24% Similarity=0.278 Sum_probs=31.1
Q ss_pred HhcCCCcHHHHHHHH-HHHHHHHHHHhhcCCCChhhhHhcC-Ccccceeecch
Q psy14930 182 SQTGRWEWATICYAL-PVALNTEAILHSNNTRDLESDRQVG-IVTVAILLGQS 232 (308)
Q Consensus 182 ~~~~~~~~~~~l~~l-~~~l~~~~~~~~~~~~D~e~D~~~G-~~Tl~v~lG~~ 232 (308)
...+..++..+.... ...+........||..|.|.|+.+. ++.-|..-|+-
T Consensus 15 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~Nd~~D~~~D~~~~~~~~rPl~~g~i 67 (257)
T PF01040_consen 15 ASGGPFNWPIFLLGLLAVFLLQLAVYLLNDYFDYEEDRIHPNKPNRPLPSGRI 67 (257)
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHHHHhhChhhhhcCcccccccCcchhHHHH
Confidence 334555554443333 3335667778899999999999963 34444444433
No 61
>TIGR02056 ChlG chlorophyll synthase, ChlG. This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).
Probab=92.26 E-value=1.8 Score=39.82 Aligned_cols=47 Identities=13% Similarity=-0.039 Sum_probs=29.4
Q ss_pred HHHHHHHHhhcCCCChhhhHhcCCccccee---ecchhhHHHHHHHHHHHH
Q psy14930 199 ALNTEAILHSNNTRDLESDRQVGIVTVAIL---LGQSYSHVYYAFLLFIPY 246 (308)
Q Consensus 199 ~l~~~~~~~~~~~~D~e~D~~~G~~Tl~v~---lG~~~a~~l~~~l~~~~~ 246 (308)
.+...+....||.-|.|.|+++++ +=|+. +.+|.+......+..++.
T Consensus 64 ~l~~~~~n~~NDy~D~d~D~~~~~-~Rpi~~G~is~~~a~~~~~~l~~~~~ 113 (306)
T TIGR02056 64 PCLTGYTQTINDFYDRDIDAINEP-YRPIPSGAISEPEVITQIVLLFIAGI 113 (306)
T ss_pred HHHHHHHHHHHhHhhhhhhccCCC-CCCCCCCccCHHHHHHHHHHHHHHHH
Confidence 455667788999999999998764 33443 445555544444444333
No 62
>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed
Probab=91.87 E-value=3.4 Score=37.34 Aligned_cols=45 Identities=20% Similarity=0.118 Sum_probs=28.5
Q ss_pred HHHHHHHHHhhcCCCChhhhHhcCCcccceeec---chhhHHHHHHHHH
Q psy14930 198 VALNTEAILHSNNTRDLESDRQVGIVTVAILLG---QSYSHVYYAFLLF 243 (308)
Q Consensus 198 ~~l~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG---~~~a~~l~~~l~~ 243 (308)
..+...+....||+.|+|.|+.++ ++=|..=| ++.+..+...+..
T Consensus 46 ~~~~~~a~~~~Nd~~D~~~D~~n~-~~Rpl~sG~is~~~a~~~~~~l~~ 93 (277)
T PRK12883 46 VYLGCSGGNTINDYFDYEIDKINR-PNRPLPRGAMSRKAALYYSLLLFA 93 (277)
T ss_pred HHHHHHHHhHHHhhhhHhccccCC-CCCCCCCCccCHHHHHHHHHHHHH
Confidence 334446678899999999999754 55555544 4455554444433
No 63
>PRK12876 ubiA prenyltransferase; Reviewed
Probab=91.74 E-value=4.4 Score=37.26 Aligned_cols=40 Identities=8% Similarity=-0.138 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHhhcCCCChhhhHhcCC-cccceeecc
Q psy14930 192 ICYALPVALNTEAILHSNNTRDLESDRQVGI-VTVAILLGQ 231 (308)
Q Consensus 192 ~l~~l~~~l~~~~~~~~~~~~D~e~D~~~G~-~Tl~v~lG~ 231 (308)
++..+.+.+.-++-+..||+-|+|-|+++-| ++=|.-=|+
T Consensus 50 ~~~~~a~~~~Rsag~~~Nd~~DrdiD~~~~RT~~RPLpsG~ 90 (300)
T PRK12876 50 SLGGSAFFCARTVGIIVNQIIDCAIDKKNPRTSSRVLPAKL 90 (300)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHhcccCCCCCCCCCCCCCCC
Confidence 3555666666677788999999999999886 455555564
No 64
>PRK13106 ubiA prenyltransferase; Reviewed
Probab=91.50 E-value=6.3 Score=36.24 Aligned_cols=47 Identities=23% Similarity=0.176 Sum_probs=29.6
Q ss_pred CCCcHHH-HHHHHHHHHHHHHHHhhcCCCChhhhHhcCC-cccceeecc
Q psy14930 185 GRWEWAT-ICYALPVALNTEAILHSNNTRDLESDRQVGI-VTVAILLGQ 231 (308)
Q Consensus 185 ~~~~~~~-~l~~l~~~l~~~~~~~~~~~~D~e~D~~~G~-~Tl~v~lG~ 231 (308)
+..++.. .+..+...+...+-...||+-|+|-|+++.| ++=|..=|+
T Consensus 44 ~~~~~~~l~l~~lg~~l~~~a~~~~Nd~~D~diD~~~~RT~~RPl~sG~ 92 (300)
T PRK13106 44 GIPPISTLILIFLALFFLRTAGMTNDNLADLEIDAKNPRTKNRPLVTGA 92 (300)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHhhHHhccccCCCccCCCCCCCCC
Confidence 3444433 3344455566677788999999999998753 233444453
No 65
>PLN02809 4-hydroxybenzoate nonaprenyltransferase
Probab=91.20 E-value=3.5 Score=37.71 Aligned_cols=39 Identities=21% Similarity=0.096 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHhhcCCCChhhhHhcCC-cccceeecch
Q psy14930 194 YALPVALNTEAILHSNNTRDLESDRQVGI-VTVAILLGQS 232 (308)
Q Consensus 194 ~~l~~~l~~~~~~~~~~~~D~e~D~~~G~-~Tl~v~lG~~ 232 (308)
..+...+...+-...||+.|+|-|+++.| |+=|.-=|+-
T Consensus 50 ~~~g~~~~~~a~~~~Nd~~Dr~iD~~~~RT~~RPL~sG~i 89 (289)
T PLN02809 50 FGCGALLLRGAGCTINDLLDRDIDKKVERTKLRPIASGAL 89 (289)
T ss_pred HHHHHHHHHHHHHHHHhhHHhccccCCCCCCCCCCCCCCC
Confidence 34444566677789999999999998765 5667666743
No 66
>PRK12895 ubiA prenyltransferase; Reviewed
Probab=91.14 E-value=6.1 Score=36.10 Aligned_cols=53 Identities=9% Similarity=-0.035 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHhhcCCCChhhhHhcCCc-ccc---eeecchhhHHHHHHHHHHH
Q psy14930 193 CYALPVALNTEAILHSNNTRDLESDRQVGIV-TVA---ILLGQSYSHVYYAFLLFIP 245 (308)
Q Consensus 193 l~~l~~~l~~~~~~~~~~~~D~e~D~~~G~~-Tl~---v~lG~~~a~~l~~~l~~~~ 245 (308)
+..+...+..++-...||+-|+|-|+++-|+ .=| =++..+.|..+...+..++
T Consensus 41 l~~~~~~~~rsag~~~Ndi~Dr~iD~~~~RT~~RPLpsG~is~~~A~~~~~~~~~~~ 97 (286)
T PRK12895 41 LILIAAVSARTSAMSINRIEGLRYDMINPRKKDWALVSGRIKMREAIAFTIIFIAIF 97 (286)
T ss_pred HHHHHHHHHHHHHHHHHhHHHhcccCCCCcCCCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 3344444556777889999999999988433 233 3444455555444444333
No 67
>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase. A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.
Probab=90.74 E-value=3 Score=37.84 Aligned_cols=56 Identities=13% Similarity=0.035 Sum_probs=34.2
Q ss_pred cCCCcHH-HHHHHHHHHHHHHHHHhhcCCCChhhhHhcCC-cccce---eecchhhHHHHH
Q psy14930 184 TGRWEWA-TICYALPVALNTEAILHSNNTRDLESDRQVGI-VTVAI---LLGQSYSHVYYA 239 (308)
Q Consensus 184 ~~~~~~~-~~l~~l~~~l~~~~~~~~~~~~D~e~D~~~G~-~Tl~v---~lG~~~a~~l~~ 239 (308)
.+..++. .++..+...+...+....||+.|+|.|+++.| ++=|. ++.++.+..+..
T Consensus 30 ~~~~~~~~~~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~~Rt~~RPl~sG~is~~~a~~~~~ 90 (282)
T TIGR01475 30 KGLPGLKTLILILIAAVSARTAAMAFNRIIDRAIDARNPRTKNRPLVSGLISKKEARTMII 90 (282)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccCCCCCCCCCcCHHHHHHHHH
Confidence 3444543 33444555667788889999999999998732 22233 344555555443
No 68
>PRK12871 ubiA prenyltransferase; Reviewed
Probab=90.58 E-value=4.3 Score=37.29 Aligned_cols=64 Identities=20% Similarity=0.190 Sum_probs=34.0
Q ss_pred CCCcHHHHH-HHHHHHHHHHHHHhhcCCCChhhhHhc-----CC-----cccce---eecchhhHHHHHHHHHHHHHH
Q psy14930 185 GRWEWATIC-YALPVALNTEAILHSNNTRDLESDRQV-----GI-----VTVAI---LLGQSYSHVYYAFLLFIPYIV 248 (308)
Q Consensus 185 ~~~~~~~~l-~~l~~~l~~~~~~~~~~~~D~e~D~~~-----G~-----~Tl~v---~lG~~~a~~l~~~l~~~~~~~ 248 (308)
+..++.... ..+...+...+-...||+-|+|-|+.. +| |+=|. ++-+|.+..+...+.+++..+
T Consensus 36 g~~~~~~~~l~~l~~~l~~~ag~~iND~~D~~~D~~~v~rtm~r~~~P~~~Rpl~sG~is~~~a~~~~i~l~~i~~~l 113 (297)
T PRK12871 36 GGFSWELTIKAALIGLFGFEAGFVLNDYVDRKRDRLDVENTLTRYWRPFKERPIPSGKLSSKNAFALFILLAAVTSAL 113 (297)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHhhHHHHhcCcchHhhhhhccccCCCCCccCCCCcCHHHHHHHHHHHHHHHHHH
Confidence 445554333 233333334444689999999999752 21 22333 444555555555555544433
No 69
>PRK13591 ubiA prenyltransferase; Provisional
Probab=90.28 E-value=6.1 Score=36.44 Aligned_cols=39 Identities=15% Similarity=0.043 Sum_probs=27.3
Q ss_pred HHHHhcCCCcHHHHHHHHHHHHHHHHHHhhcCCCChhhhHhc
Q psy14930 179 AFMSQTGRWEWATICYALPVALNTEAILHSNNTRDLESDRQV 220 (308)
Q Consensus 179 ~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~D~e~D~~~ 220 (308)
++..+..+.++. ..+..++.+.+....||.-|+|.|+-+
T Consensus 51 a~lL~g~~~~~~---~~~~~~L~~~s~~~iNd~~D~eiD~IN 89 (307)
T PRK13591 51 AFLLLGLQSSIL---TCIAGGLIIYSVYTLDRALDSEEDAVN 89 (307)
T ss_pred HHHHhCCCcchH---HHHHHHHHHHHHHHHhhhccchhhhcc
Confidence 344445555543 344566778888899999999999875
No 70
>PRK12888 ubiA prenyltransferase; Reviewed
Probab=89.97 E-value=7 Score=35.60 Aligned_cols=48 Identities=17% Similarity=0.223 Sum_probs=30.8
Q ss_pred cCCCcHHHH-HHHHHHHHHHHHHHhhcCCCChhhhHhcCCc-ccceeecc
Q psy14930 184 TGRWEWATI-CYALPVALNTEAILHSNNTRDLESDRQVGIV-TVAILLGQ 231 (308)
Q Consensus 184 ~~~~~~~~~-l~~l~~~l~~~~~~~~~~~~D~e~D~~~G~~-Tl~v~lG~ 231 (308)
.++.++..+ +..+...+...+-...||+-|+|-|+++.|. +=|.-=|+
T Consensus 33 ~~~~~~~~~~l~~l~~~l~~~a~~~~Nd~~Dr~iD~~~~RT~~RPL~sG~ 82 (284)
T PRK12888 33 DGSVHWADLLLVTVAMVGARTFAMAANRIIDREIDARNPRTAGRELVTGA 82 (284)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHhHHhhCCCCCCCCCCCCCCCCCC
Confidence 455555433 3444555666777899999999999988631 23444454
No 71
>PRK12875 ubiA prenyltransferase; Reviewed
Probab=89.81 E-value=4.5 Score=36.85 Aligned_cols=19 Identities=16% Similarity=0.038 Sum_probs=16.2
Q ss_pred hhcCCCChhhhHhcCCccc
Q psy14930 207 HSNNTRDLESDRQVGIVTV 225 (308)
Q Consensus 207 ~~~~~~D~e~D~~~G~~Tl 225 (308)
.+||+.|.|.||.+.+|..
T Consensus 63 ~iND~~D~D~Dr~~prk~~ 81 (282)
T PRK12875 63 GVNDVFDADTDELNPKKDR 81 (282)
T ss_pred cchhhhhhhccccCCCccC
Confidence 4799999999999887763
No 72
>PLN00012 chlorophyll synthetase; Provisional
Probab=89.77 E-value=4.3 Score=38.54 Aligned_cols=42 Identities=17% Similarity=-0.100 Sum_probs=26.3
Q ss_pred HHHHHHHHHhhcCCCChhhhHhcCCcccceeec---chhhHHHHHH
Q psy14930 198 VALNTEAILHSNNTRDLESDRQVGIVTVAILLG---QSYSHVYYAF 240 (308)
Q Consensus 198 ~~l~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG---~~~a~~l~~~ 240 (308)
..+...+....||+-|.|.|++++ ++=|+.=| ++.+......
T Consensus 132 ~~L~~~~an~iNDy~D~~iD~~~~-~~Rpi~sG~Is~~~al~~~~~ 176 (375)
T PLN00012 132 GPFLTGYTQTINDWYDREIDAINE-PYRPIPSGAISENEVITQIWV 176 (375)
T ss_pred HHHHHHHHHHHHCeecHhhhccCC-CCCCcCCCccCHHHHHHHHHH
Confidence 334556678899999999998876 33333334 4444443333
No 73
>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed
Probab=89.43 E-value=14 Score=33.57 Aligned_cols=60 Identities=10% Similarity=0.053 Sum_probs=34.9
Q ss_pred CCcHHHH-HHHHHHHHHHHHHHhhcCCCChhhhHhcCC-cccce---eecchhhHHHHHHHHHHH
Q psy14930 186 RWEWATI-CYALPVALNTEAILHSNNTRDLESDRQVGI-VTVAI---LLGQSYSHVYYAFLLFIP 245 (308)
Q Consensus 186 ~~~~~~~-l~~l~~~l~~~~~~~~~~~~D~e~D~~~G~-~Tl~v---~lG~~~a~~l~~~l~~~~ 245 (308)
..++..+ +..+...+...+....||..|+|-|+++.| +.=|. ++.++.+..+...+..++
T Consensus 32 ~~~~~~~~l~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~is~~~a~~~~~~~~~~~ 96 (279)
T PRK12869 32 GVSWLPLIPLLIGGTLASGGSAAFNHGIERDIDKVMSRTSKRPTPVGLVNRKEALAVGSALSALG 96 (279)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhchHhcCCCCCCCCCCCCCcCCCCcCHHHHHHHHHHHHHHH
Confidence 3444333 334445566777789999999999998654 23333 344455544443333333
No 74
>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=89.19 E-value=4.1 Score=37.27 Aligned_cols=37 Identities=19% Similarity=0.039 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHhhcCCCChhhhHhcCCc-ccceeecc
Q psy14930 195 ALPVALNTEAILHSNNTRDLESDRQVGIV-TVAILLGQ 231 (308)
Q Consensus 195 ~l~~~l~~~~~~~~~~~~D~e~D~~~G~~-Tl~v~lG~ 231 (308)
.+...+...+-...||+.|+|-|+++.|. .=|.-=|+
T Consensus 52 ~lg~~~~~~a~~~~Nd~~D~~iD~~~~Rt~~RPL~sG~ 89 (290)
T PRK12870 52 ILGALATSAAGCVVNDLWDRDIDPQVERTRFRPLASRR 89 (290)
T ss_pred HHHHHHHHHHHHHHHhHHHhccCCCCCcccCCCCCCCC
Confidence 33444556777889999999999865542 34444443
No 75
>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=89.17 E-value=7.3 Score=35.40 Aligned_cols=37 Identities=19% Similarity=0.100 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHhhcCCCChhhhHhcCC-cccceeecc
Q psy14930 195 ALPVALNTEAILHSNNTRDLESDRQVGI-VTVAILLGQ 231 (308)
Q Consensus 195 ~l~~~l~~~~~~~~~~~~D~e~D~~~G~-~Tl~v~lG~ 231 (308)
.+...+...+....||..|+|-|++..| ++=|..=|+
T Consensus 51 ~l~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~sG~ 88 (285)
T PRK12847 51 IIGSVLMRSAGCIINDIFDRKIDKHVARTKNRPLASGA 88 (285)
T ss_pred HHHHHHHHHHHHHHHhHHHhhhccCCCcccCCCCCCCC
Confidence 3344556677788999999999997554 344544453
No 76
>PRK12873 ubiA prenyltransferase; Reviewed
Probab=89.02 E-value=8.7 Score=35.23 Aligned_cols=49 Identities=20% Similarity=0.065 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHhhcCCCChhhhHhcCC-cccceeec---chhhHHHHHHHH
Q psy14930 194 YALPVALNTEAILHSNNTRDLESDRQVGI-VTVAILLG---QSYSHVYYAFLL 242 (308)
Q Consensus 194 ~~l~~~l~~~~~~~~~~~~D~e~D~~~G~-~Tl~v~lG---~~~a~~l~~~l~ 242 (308)
..+...+...+....||+.|+|-|+++.| |.=|.-=| ++.|..+..++.
T Consensus 49 ~~~g~~l~~~a~~~~Nd~~D~~iD~~~~RT~~RPl~sG~is~~~A~~~~~~~~ 101 (294)
T PRK12873 49 IILGGLAVSGAGCIANDLWDRRIDRKVERTKNRPLARGKISLKTAYSLLIVLL 101 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCcCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 34445566677789999999999998876 46665555 444444443333
No 77
>PRK12872 ubiA prenyltransferase; Reviewed
Probab=88.79 E-value=16 Score=33.00 Aligned_cols=35 Identities=26% Similarity=0.049 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHhhcCCCChhhhHhcCC-cccc
Q psy14930 192 ICYALPVALNTEAILHSNNTRDLESDRQVGI-VTVA 226 (308)
Q Consensus 192 ~l~~l~~~l~~~~~~~~~~~~D~e~D~~~G~-~Tl~ 226 (308)
+...+...+...+....||..|+|.|+.+.+ |+.+
T Consensus 39 ~~~~~~~~~~~~~~~~~N~~~D~~~D~~n~~~R~~~ 74 (285)
T PRK12872 39 WLLLLITFLIAAAVYIINYLTDLEEDIINKPERVVF 74 (285)
T ss_pred HHHHHHHHHHHHHHHHhhhhcCCchhhcCCCchHHH
Confidence 3444455566778888999999999997643 4433
No 78
>PRK08238 hypothetical protein; Validated
Probab=88.59 E-value=3.5 Score=40.50 Aligned_cols=54 Identities=22% Similarity=0.182 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHhhcCCCChhhhHhcC-Cccccee---ecchhhHHHHHHHHHHHH
Q psy14930 193 CYALPVALNTEAILHSNNTRDLESDRQVG-IVTVAIL---LGQSYSHVYYAFLLFIPY 246 (308)
Q Consensus 193 l~~l~~~l~~~~~~~~~~~~D~e~D~~~G-~~Tl~v~---lG~~~a~~l~~~l~~~~~ 246 (308)
+..+.+++...+....||+-|+|.||++- +|.=|.- +..+.+..+...+..++.
T Consensus 230 ~~f~~~~l~~sa~~~~ND~~D~e~Dr~~~rk~~RPlasG~is~~~A~~~~~~l~~~~~ 287 (479)
T PRK08238 230 LAFLAFSLCASAVYILNDLLDLEADRAHPRKRRRPFASGALPIPFGLAAAPLLLLAGL 287 (479)
T ss_pred HHHHHHHHHHHHHHHHHhhHHhhhhccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 34445667778889999999999999984 3444544 445555555444444443
No 79
>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial. A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.
Probab=88.56 E-value=5.4 Score=36.25 Aligned_cols=37 Identities=22% Similarity=0.096 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHhhcCCCChhhhHhcCC-cccceeecc
Q psy14930 195 ALPVALNTEAILHSNNTRDLESDRQVGI-VTVAILLGQ 231 (308)
Q Consensus 195 ~l~~~l~~~~~~~~~~~~D~e~D~~~G~-~Tl~v~lG~ 231 (308)
.+...+...+....||+.|+|-|++..| +.=|.-=|+
T Consensus 46 ~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~ 83 (281)
T TIGR01474 46 TVGAILMRGAGCVINDIWDRDFDPQVERTKSRPLASGA 83 (281)
T ss_pred HHHHHHHHHHHHHHHhHhhhcccccCCcccCCCCCCCC
Confidence 3334455677789999999999997654 234444453
No 80
>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase. This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.
Probab=88.04 E-value=19 Score=32.50 Aligned_cols=59 Identities=10% Similarity=-0.004 Sum_probs=34.3
Q ss_pred CcHHHH-HHHHHHHHHHHHHHhhcCCCChhhhHhcCC-cccce---eecchhhHHHHHHHHHHH
Q psy14930 187 WEWATI-CYALPVALNTEAILHSNNTRDLESDRQVGI-VTVAI---LLGQSYSHVYYAFLLFIP 245 (308)
Q Consensus 187 ~~~~~~-l~~l~~~l~~~~~~~~~~~~D~e~D~~~G~-~Tl~v---~lG~~~a~~l~~~l~~~~ 245 (308)
.++..+ +..+...+...+....||..|+|-|+++.| ++=|. ++.+|.+..+...+..++
T Consensus 32 ~~~~~~~l~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~sG~is~~~a~~~~~~~~~~g 95 (280)
T TIGR01473 32 VNPPLLLLTLLGTTLAAASANAFNMYIDRDIDKKMKRTRNRPLVTGRISPREALAFGLLLGVLG 95 (280)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhhcccCcCCCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHH
Confidence 344333 334444556677789999999999997543 33343 334455555544444433
No 81
>PRK04375 protoheme IX farnesyltransferase; Provisional
Probab=87.91 E-value=8.9 Score=35.09 Aligned_cols=52 Identities=17% Similarity=0.126 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHhhcCCCChhhhHhcCC-cccce---eecchhhHHHHHHHHHHHH
Q psy14930 195 ALPVALNTEAILHSNNTRDLESDRQVGI-VTVAI---LLGQSYSHVYYAFLLFIPY 246 (308)
Q Consensus 195 ~l~~~l~~~~~~~~~~~~D~e~D~~~G~-~Tl~v---~lG~~~a~~l~~~l~~~~~ 246 (308)
.+...+...+-...||+.|+|-|+++.| +.=|. ++.+|.+..+...+..++.
T Consensus 50 ~l~~~l~~aa~~~iNd~~D~~iD~~~~Rt~~Rpl~sG~is~~~a~~~~~~l~~~g~ 105 (296)
T PRK04375 50 LLGIALVAGAAGALNNYIDRDIDAKMERTKNRPLVTGRISPREALIFGLVLGVLGF 105 (296)
T ss_pred HHHHHHHHHHHHHHHhHHhhccCCCCCccCCCCCCCCCcCHHHHHHHHHHHHHHHH
Confidence 3344455667788999999999998643 22333 3445555555444443333
No 82
>PRK13362 protoheme IX farnesyltransferase; Provisional
Probab=87.89 E-value=18 Score=33.36 Aligned_cols=50 Identities=14% Similarity=0.018 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhhcCCCChhhhHhcCC-cccceeec---chhhHHHHHHHHHHHH
Q psy14930 197 PVALNTEAILHSNNTRDLESDRQVGI-VTVAILLG---QSYSHVYYAFLLFIPY 246 (308)
Q Consensus 197 ~~~l~~~~~~~~~~~~D~e~D~~~G~-~Tl~v~lG---~~~a~~l~~~l~~~~~ 246 (308)
...+...+....||..|+|-|+++.| |.=|.-=| ++.+..+...+..++.
T Consensus 55 g~~l~~aaa~~~Nd~~D~~iD~~~~Rt~~RPlpsG~is~~~A~~~~~~l~~~g~ 108 (306)
T PRK13362 55 GLSLVVASGCALNNCIDRDIDAKMQRTRNRVTVTGEISLGEALGFGLALGVAGF 108 (306)
T ss_pred HHHHHHHHHHHHhChHHhCcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 44556677789999999999997654 23344334 4455444444444333
No 83
>PRK12886 ubiA prenyltransferase; Reviewed
Probab=87.82 E-value=7.9 Score=35.39 Aligned_cols=39 Identities=21% Similarity=0.063 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHhhcCCCChhhhHhcCC-cccceeecc
Q psy14930 193 CYALPVALNTEAILHSNNTRDLESDRQVGI-VTVAILLGQ 231 (308)
Q Consensus 193 l~~l~~~l~~~~~~~~~~~~D~e~D~~~G~-~Tl~v~lG~ 231 (308)
+..+...+...+-...||+-|+|-|+++.| +.=|..=|+
T Consensus 46 ~~~l~~~l~~~a~~~~Nd~~D~~iD~~~~RT~~RPL~sG~ 85 (291)
T PRK12886 46 WILMAMVGARTAAMGFNRLIDAEIDARNPRTAGRAIPAGL 85 (291)
T ss_pred HHHHHHHHHHHHHHHHHhHHhhccCCCCCCCCCCCCCCCC
Confidence 344445555666778999999999998763 223555553
No 84
>PLN02776 prenyltransferase
Probab=87.66 E-value=21 Score=33.50 Aligned_cols=59 Identities=5% Similarity=0.004 Sum_probs=35.1
Q ss_pred CcHHHH-HHHHHHHHHHHHHHhhcCCCChhhhHhcCC-cccce---eecchhhHHHHHHHHHHH
Q psy14930 187 WEWATI-CYALPVALNTEAILHSNNTRDLESDRQVGI-VTVAI---LLGQSYSHVYYAFLLFIP 245 (308)
Q Consensus 187 ~~~~~~-l~~l~~~l~~~~~~~~~~~~D~e~D~~~G~-~Tl~v---~lG~~~a~~l~~~l~~~~ 245 (308)
.++..+ +..+...+...+-...||+-|+|-|++..| +.=|. ++.++.+..+...+..++
T Consensus 26 ~~~~~l~~~~lg~~l~~aaa~~~N~i~DrdiD~~m~RT~~RPLpsGris~~~A~~~~~~l~~~g 89 (341)
T PLN02776 26 IDLPGLGWTCAGTMLCAASANTLNQVFEVKNDSKMKRTMRRPLPSGRISVPHAVAWAVVVGAAG 89 (341)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhHHhhhhcccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 454333 344455566677789999999999988554 33344 444455555444444333
No 85
>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed
Probab=87.19 E-value=9.3 Score=34.69 Aligned_cols=48 Identities=19% Similarity=0.169 Sum_probs=28.9
Q ss_pred HHHHHHHHHhhcCCCChhhhHhcCC-cccceeec---chhhHHHHHHHHHHH
Q psy14930 198 VALNTEAILHSNNTRDLESDRQVGI-VTVAILLG---QSYSHVYYAFLLFIP 245 (308)
Q Consensus 198 ~~l~~~~~~~~~~~~D~e~D~~~G~-~Tl~v~lG---~~~a~~l~~~l~~~~ 245 (308)
..+...+-...||+.|+|-|++..| |.=|.-=| ++.+..+...+..++
T Consensus 51 ~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~is~~~a~~~~~~l~~~~ 102 (282)
T PRK12848 51 VFLMRAAGCVINDYADRDFDGHVKRTKNRPLASGAVSEKEALALFVVLVLVA 102 (282)
T ss_pred HHHHHHHHHHHHhhHHhccCCCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHH
Confidence 3455577789999999999986544 23343334 445555444444433
No 86
>PRK12392 bacteriochlorophyll c synthase; Provisional
Probab=87.06 E-value=8.2 Score=36.02 Aligned_cols=45 Identities=22% Similarity=0.070 Sum_probs=28.7
Q ss_pred HHHhhcCCCChhhhHhcCCccccee---ecchhhHHHHHHHHHHHHHHH
Q psy14930 204 AILHSNNTRDLESDRQVGIVTVAIL---LGQSYSHVYYAFLLFIPYIVF 249 (308)
Q Consensus 204 ~~~~~~~~~D~e~D~~~G~~Tl~v~---lG~~~a~~l~~~l~~~~~~~~ 249 (308)
+....||+-|+|.|+.++ ||=|.. +.+|.++.+...+..++..+.
T Consensus 65 a~~~iND~~D~~~D~~n~-rtRpl~~G~is~~~al~~~~~l~~la~~lg 112 (331)
T PRK12392 65 FSQSVNDYFDLELDRVNE-PTRPIPSGRLSEKEALWNSIIVLLLAIGLG 112 (331)
T ss_pred HHhHHhcceeecccccCC-CCCCCCcCCcCHHHHHHHHHHHHHHHHHHH
Confidence 346789999999999765 444443 345666666655555544333
No 87
>PRK05951 ubiA prenyltransferase; Reviewed
Probab=87.02 E-value=8.2 Score=35.33 Aligned_cols=42 Identities=14% Similarity=-0.059 Sum_probs=27.3
Q ss_pred hcCCCcHHHHHHHH-HHHHHHHHHHhhcCCCChhhhHhcCCcc
Q psy14930 183 QTGRWEWATICYAL-PVALNTEAILHSNNTRDLESDRQVGIVT 224 (308)
Q Consensus 183 ~~~~~~~~~~l~~l-~~~l~~~~~~~~~~~~D~e~D~~~G~~T 224 (308)
+.+++++...+..+ ...+...+....||..|.|.|+...+||
T Consensus 33 ~~~~f~~~~~ll~~l~~~l~~~~~n~~Ndy~D~~~g~D~~~rt 75 (296)
T PRK05951 33 LFRSFDPLLGALMLLGYFLLHASLNVFNDYKDYVLDCDHHETT 75 (296)
T ss_pred hcCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCcccccc
Confidence 34677776655444 3445567778999999977766655433
No 88
>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase. This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.
Probab=86.60 E-value=7.9 Score=35.08 Aligned_cols=46 Identities=15% Similarity=0.031 Sum_probs=28.4
Q ss_pred HHHHHHHHhhcCCCChhhhHhcCCcccce---eecchhhHHHHHHHHHHH
Q psy14930 199 ALNTEAILHSNNTRDLESDRQVGIVTVAI---LLGQSYSHVYYAFLLFIP 245 (308)
Q Consensus 199 ~l~~~~~~~~~~~~D~e~D~~~G~~Tl~v---~lG~~~a~~l~~~l~~~~ 245 (308)
.+...+....||.-|+|.|++++ ++=|+ ++-+|.++.+...+..++
T Consensus 48 ~l~~~~~n~~Nd~~D~~~D~~~~-~~Rpi~~G~is~~~a~~~~~~~~~~~ 96 (283)
T TIGR01476 48 PLGTGFSQSINDYFDRDVDAINE-PQRPIPSGIISLREVRWNWLVLTVAG 96 (283)
T ss_pred HHHHHHHHHHHhHhhhCcccCCC-CCCCCCCCCcCHHHHHHHHHHHHHHH
Confidence 34556667899999999999876 23333 334555555544444333
No 89
>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed
Probab=86.48 E-value=6.6 Score=36.30 Aligned_cols=46 Identities=17% Similarity=0.034 Sum_probs=29.1
Q ss_pred HHHHHHHhhcCCCChhhhHhcCCcccce---eecchhhHHHHHHHHHHHH
Q psy14930 200 LNTEAILHSNNTRDLESDRQVGIVTVAI---LLGQSYSHVYYAFLLFIPY 246 (308)
Q Consensus 200 l~~~~~~~~~~~~D~e~D~~~G~~Tl~v---~lG~~~a~~l~~~l~~~~~ 246 (308)
+...+....||+.|.|.|++++ ++=|. ++.++.+..+...+..++.
T Consensus 76 l~~~~~~~~Nd~~D~~~D~~~~-~~Rpl~sG~is~~~a~~~~~~l~~~~~ 124 (314)
T PRK07566 76 LLCGTSQTLNDYFDREVDAINE-PYRPIPSGAISLRWVLYLIAVLTVLGL 124 (314)
T ss_pred HHHHHHHHHhhhhccCccccCC-CCCCCCCceeCHHHHHHHHHHHHHHHH
Confidence 3456667899999999999765 22333 4455666665554444433
No 90
>PRK12887 ubiA tocopherol phytyltransferase; Reviewed
Probab=85.79 E-value=29 Score=31.99 Aligned_cols=32 Identities=19% Similarity=0.189 Sum_probs=21.3
Q ss_pred hcCCCChhhhHhcCCcccceeec---chhhHHHHHH
Q psy14930 208 SNNTRDLESDRQVGIVTVAILLG---QSYSHVYYAF 240 (308)
Q Consensus 208 ~~~~~D~e~D~~~G~~Tl~v~lG---~~~a~~l~~~ 240 (308)
.||+.|+|-|+.+ |++-|+-=| ++.++.+...
T Consensus 72 iNd~~D~~iD~in-kp~rPiasG~ls~~~a~~~~~~ 106 (308)
T PRK12887 72 LNQLTDIEIDRIN-KPHLPLAAGEFSRRQGQRIVII 106 (308)
T ss_pred HhhhhhHHHHhcC-CCCCCcCCcccCHHHHHHHHHH
Confidence 8999999999965 466665444 4444444433
No 91
>PRK12874 ubiA prenyltransferase; Reviewed
Probab=85.05 E-value=18 Score=33.03 Aligned_cols=37 Identities=11% Similarity=0.085 Sum_probs=23.5
Q ss_pred CCcHHHHHH-HHHHHHHHHHHHhhcCCCChhhhHhcCC
Q psy14930 186 RWEWATICY-ALPVALNTEAILHSNNTRDLESDRQVGI 222 (308)
Q Consensus 186 ~~~~~~~l~-~l~~~l~~~~~~~~~~~~D~e~D~~~G~ 222 (308)
..++..... .+...+...+-...||.-|+|-|+++.|
T Consensus 43 ~~~~~~~~l~~l~~~l~~~a~~~~Nd~~DrdiD~~~~R 80 (291)
T PRK12874 43 WFGFKLLILGILAAVSARNFAMAFNRLVDRDIDKDNPR 80 (291)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhhhhhccccCCCC
Confidence 345443333 3333344555678899999999998853
No 92
>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=84.05 E-value=14 Score=34.23 Aligned_cols=27 Identities=19% Similarity=0.043 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHhhcCCCChhhhHhcC
Q psy14930 195 ALPVALNTEAILHSNNTRDLESDRQVG 221 (308)
Q Consensus 195 ~l~~~l~~~~~~~~~~~~D~e~D~~~G 221 (308)
.+...+...+-...||.-|+|-|++..
T Consensus 78 ~l~~~l~~~a~~~~Nd~~Dr~iD~~~~ 104 (314)
T PRK12878 78 FVGAIAMRGAGCTYNDIVDRDIDAKVA 104 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCC
Confidence 334445566778899999999998754
No 93
>PRK13592 ubiA prenyltransferase; Provisional
Probab=83.98 E-value=12 Score=34.34 Aligned_cols=49 Identities=12% Similarity=0.067 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhhcCCCChhhhHhcC--CcccceeecchhhHHHHHHHHHHH
Q psy14930 197 PVALNTEAILHSNNTRDLESDRQVG--IVTVAILLGQSYSHVYYAFLLFIP 245 (308)
Q Consensus 197 ~~~l~~~~~~~~~~~~D~e~D~~~G--~~Tl~v~lG~~~a~~l~~~l~~~~ 245 (308)
...+.+.+-..+||..|+|-||.+. |.-..=+..+|.++.+...+..++
T Consensus 54 ~vf~~~~~gniiNDy~D~EIDrIN~P~RPLPsG~VS~~~A~~~si~L~~~~ 104 (299)
T PRK13592 54 TVFGFWMILRIADDFKDYETDRRLFPHRALPSGRVKKKDLAIALSFIVAVS 104 (299)
T ss_pred HHHHHHHHhHHHHHHhhHHHhhhcCCCCCCCcCCCCHHHHHHHHHHHHHHH
Confidence 3444456667899999999998664 222223445566665554443333
No 94
>PRK13105 ubiA prenyltransferase; Reviewed
Probab=82.28 E-value=39 Score=30.76 Aligned_cols=21 Identities=24% Similarity=-0.010 Sum_probs=16.8
Q ss_pred hhcCCCChhhhHhcCCcccce
Q psy14930 207 HSNNTRDLESDRQVGIVTVAI 227 (308)
Q Consensus 207 ~~~~~~D~e~D~~~G~~Tl~v 227 (308)
-.||.-|.|.|+.+.+|.-+.
T Consensus 52 ~~Ndy~D~~~d~dn~r~~g~~ 72 (282)
T PRK13105 52 GINDVFDYESDLRNPRKGGVE 72 (282)
T ss_pred hhhhhhhhhcCCCCcccCCCC
Confidence 449999999999988776553
No 95
>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=80.43 E-value=38 Score=31.21 Aligned_cols=60 Identities=12% Similarity=-0.005 Sum_probs=31.6
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCCCCceecccCCHHHHHHHHHHHHHHH
Q psy14930 54 QFSWIILFVTLLTVISVHCAGNVVNTYYDYVLGIDTSRRSDDRTLVDHILSESELVSLGVMLYLVS 119 (308)
Q Consensus 54 ~~~~~~~ll~~l~~~~~~~~~n~~Ndy~D~~~g~D~~~~~~~r~l~~g~ls~~~~~~~~~~~~~~~ 119 (308)
.+++..++.++... +........||+-|+|+ |+ +.++|.++- ++.++.+.++...+...+
T Consensus 171 ~~~~~~~~~sl~~g-ll~~~IL~~Nn~rD~e~--D~--~~Gk~TL~v-~lG~~~a~~ly~~l~~~a 230 (304)
T PRK07419 171 SWSLIPLAASIILG-LATSLILFCSHFHQVED--DL--AAGKRSPIV-RLGTKRGAQLLPWIVGLI 230 (304)
T ss_pred CCCHHHHHHHHHHH-HHHHHHHHHcCCcchhh--HH--HcCCcceee-eechHhHHHHHHHHHHHH
Confidence 34444443333322 45567788999999984 53 233444442 244555555544443333
No 96
>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=79.51 E-value=24 Score=32.63 Aligned_cols=37 Identities=14% Similarity=0.104 Sum_probs=24.5
Q ss_pred cCCCcHHHHHHHHHH-HHHHHHHHhhcCCCChhhhHhc
Q psy14930 184 TGRWEWATICYALPV-ALNTEAILHSNNTRDLESDRQV 220 (308)
Q Consensus 184 ~~~~~~~~~l~~l~~-~l~~~~~~~~~~~~D~e~D~~~ 220 (308)
.+++++...+..+.. .+.-.+....||..|.|.|+..
T Consensus 33 ~~~~~~~~~ll~ll~~~~~~~~~N~~NDy~D~~~g~D~ 70 (317)
T PRK13387 33 AKIFDWLLFLAFMVAMLAFDIATTAINNYMDFKKALDT 70 (317)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCCc
Confidence 456777555444433 4456777899999998876554
No 97
>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase. This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.
Probab=75.46 E-value=64 Score=29.34 Aligned_cols=32 Identities=19% Similarity=0.099 Sum_probs=21.9
Q ss_pred CCCcHHHHHHHHH-HHHHHHHHHhhcCCCChhh
Q psy14930 185 GRWEWATICYALP-VALNTEAILHSNNTRDLES 216 (308)
Q Consensus 185 ~~~~~~~~l~~l~-~~l~~~~~~~~~~~~D~e~ 216 (308)
+++++...+.++. ..+...+....||..|.+.
T Consensus 23 ~~f~~~~~ll~~~~~~~~q~~~N~~NDy~D~~~ 55 (284)
T TIGR00751 23 HAFVWLVALLALATAVLLQILSNYANDYGDGIK 55 (284)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHhHHHHhc
Confidence 4777766555443 3455677789999999854
No 98
>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase. This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.
Probab=72.59 E-value=66 Score=29.28 Aligned_cols=37 Identities=24% Similarity=0.202 Sum_probs=24.8
Q ss_pred hcCCCcHHHHHHHHH-HHHHHHHHHhhcCCCChhh--hHh
Q psy14930 183 QTGRWEWATICYALP-VALNTEAILHSNNTRDLES--DRQ 219 (308)
Q Consensus 183 ~~~~~~~~~~l~~l~-~~l~~~~~~~~~~~~D~e~--D~~ 219 (308)
+.+++++..++..+. ..+.-.+..+.||..|.+. |++
T Consensus 28 ~~~~f~~~~~ll~li~~l~~q~~~N~~Ndy~D~~~G~D~~ 67 (285)
T TIGR02235 28 QGGVFHLDRFALFLIAAILILAWINLTNDVFDSDTGIDRF 67 (285)
T ss_pred cCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCCcc
Confidence 345778776555543 3445567788999999877 663
No 99
>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]
Probab=72.04 E-value=50 Score=30.40 Aligned_cols=31 Identities=26% Similarity=0.281 Sum_probs=22.0
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHhhhhhhhhc
Q psy14930 54 QFSWIILFVTLLTVISVHCAGNVVNTYYDYVL 85 (308)
Q Consensus 54 ~~~~~~~ll~~l~~~~~~~~~n~~Ndy~D~~~ 85 (308)
++++...+.++ .+....+..+..|+..|.|+
T Consensus 173 ~~~~~~ll~sl-p~gil~~~Il~aNNirDie~ 203 (303)
T COG1575 173 RLSWAILLPSL-PVGILIANILLANNLRDIEE 203 (303)
T ss_pred cchHHHHHHHH-HHHHHHHHHHHhcccccchh
Confidence 67776554443 55566678899999999874
No 100
>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated
Probab=69.86 E-value=41 Score=30.51 Aligned_cols=62 Identities=16% Similarity=0.085 Sum_probs=34.2
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCCCCceecccCCHHHHHHHHHHHHHHHHH
Q psy14930 54 QFSWIILFVTLLTVISVHCAGNVVNTYYDYVLGIDTSRRSDDRTLVDHILSESELVSLGVMLYLVSSA 121 (308)
Q Consensus 54 ~~~~~~~ll~~l~~~~~~~~~n~~Ndy~D~~~g~D~~~~~~~r~l~~g~ls~~~~~~~~~~~~~~~~~ 121 (308)
.+++..++.++ ...+........||.-|.|. |+ +.+.|.++. ++..+.++.+...+..++.+
T Consensus 165 ~~~~~~~~~~l-~~~l~~~~~~~~n~~~D~~~--D~--~~G~~Tl~v-~lG~~~a~~~~~~l~~~~~~ 226 (293)
T PRK06080 165 TVDSAVFLPAL-PCGLLIGAVLLANNIRDIET--DR--ENGKNTLAV-RLGDKNARRLHAALLALAYL 226 (293)
T ss_pred CCCHHHHHHHH-HHHHHHHHHHHhcCCCcchh--HH--HcCCeeEEe-eECcHhHHHHHHHHHHHHHH
Confidence 56665554443 34455677889999999974 43 233344442 23445555555544444433
No 101
>COG0109 CyoE Polyprenyltransferase (cytochrome oxidase assembly factor) [Posttranslational modification, protein turnover, chaperones]
Probab=60.74 E-value=1.4e+02 Score=27.54 Aligned_cols=65 Identities=15% Similarity=0.015 Sum_probs=39.7
Q ss_pred CCCcHHHHHHHHH-HHHHHHHHHhhcCCCChhhhHhcCC----cccceeecchhhHHHHHHHHHHHHHHH
Q psy14930 185 GRWEWATICYALP-VALNTEAILHSNNTRDLESDRQVGI----VTVAILLGQSYSHVYYAFLLFIPYIVF 249 (308)
Q Consensus 185 ~~~~~~~~l~~l~-~~l~~~~~~~~~~~~D~e~D~~~G~----~Tl~v~lG~~~a~~l~~~l~~~~~~~~ 249 (308)
++.++..++..+. .++-..+-...|+..|+|-|+...| .+..-++.++.+..+-..+.+++..++
T Consensus 47 ~~~~~~l~~~~~~g~~L~a~~a~a~N~~~DrDID~~M~RT~~RP~~~G~i~p~~al~fgl~L~~~g~~~l 116 (304)
T COG0109 47 GSINPLLLLLTLLGGALGAGGAGAFNMYIDRDIDALMERTRKRPLVTGLISPREALAFGLVLGVAGFSLL 116 (304)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHhhhhccCCCCCCCccCHHHHHHHHHHHHHHHHHHH
Confidence 4555554444433 3445566678899999999987663 355555566666666555555555443
No 102
>PLN02878 homogentisate phytyltransferase
Probab=56.97 E-value=1.1e+02 Score=27.98 Aligned_cols=23 Identities=26% Similarity=0.348 Sum_probs=19.3
Q ss_pred hcCCCChhhhHhcCCcccceeecc
Q psy14930 208 SNNTRDLESDRQVGIVTVAILLGQ 231 (308)
Q Consensus 208 ~~~~~D~e~D~~~G~~Tl~v~lG~ 231 (308)
.||..|+|-|| ..|...|+-=|+
T Consensus 42 lNd~~D~EIDk-INkP~rPIpSG~ 64 (280)
T PLN02878 42 LNQLYDIEIDK-VNKPYLPLASGE 64 (280)
T ss_pred hhhhhhhcccc-cCCCCCCCCCCC
Confidence 79999999996 667888887774
No 103
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=53.69 E-value=1.4e+02 Score=25.49 Aligned_cols=11 Identities=18% Similarity=0.498 Sum_probs=8.4
Q ss_pred CCCcchhhhhh
Q psy14930 4 NNNNKNIWFTM 14 (308)
Q Consensus 4 ~~~~~~~~l~~ 14 (308)
|.||.-+|+|+
T Consensus 90 Ntdp~lm~lDs 100 (226)
T COG4858 90 NTDPWLMWLDS 100 (226)
T ss_pred CCCceEEEecc
Confidence 67777888885
No 104
>cd00867 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases. Trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) of class 1 isoprenoid biosynthesis enzymes which either synthesis geranyl/farnesyl diphosphates (GPP/FPP) or longer chained products from isoprene precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), or use geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate as substrate. These enzymes produce a myriad of precursors for such end products as steroids, cholesterol, sesquiterpenes, heme, carotenoids, retinoids, diterpenes, ubiquinone, and archaeal ether linked lipids; and are widely distributed among archaea, bacteria, and eukareya. The enzymes in this family share the same 'isoprenoid synthase fold' and include the head-to-tail (HT) IPPS which catalyze the successive 1'-4 condensation of the 5-carbon IPP to the growing isoprene chain to form linear, all-trans, C10-, C15-, C20- C25-, C30-, C35-, C40-, C45-, or C50-isoprenoid diphosphates
Probab=44.84 E-value=9.4 Score=33.21 Aligned_cols=29 Identities=21% Similarity=0.316 Sum_probs=25.1
Q ss_pred HHHHHhhcCCCChhhhH----------hcCCcccceeec
Q psy14930 202 TEAILHSNNTRDLESDR----------QVGIVTVAILLG 230 (308)
Q Consensus 202 ~~~~~~~~~~~D~e~D~----------~~G~~Tl~v~lG 230 (308)
-.+..+.|+++|+.+|. +.||.|+|....
T Consensus 159 G~a~Qi~dd~~D~~~d~~~~gk~~~D~~~gr~tlp~~~~ 197 (236)
T cd00867 159 GLAFQLTDDLLDVFGDAEELGKVGSDLREGRITLPVILA 197 (236)
T ss_pred HHHHHHHHHhccccCChHHHCccHHHHHcCCchHHHHHH
Confidence 45667899999998887 899999999887
No 105
>TIGR03750 conj_TIGR03750 conjugative transfer region protein, TIGR03750 family. Members of this protein family are found occasionally on plasmids. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=41.46 E-value=54 Score=25.47 Aligned_cols=33 Identities=18% Similarity=-0.004 Sum_probs=22.4
Q ss_pred ecccCCHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy14930 99 VDHILSESELVSLGVMLYLVSSAGFILLSYISP 131 (308)
Q Consensus 99 ~~g~ls~~~~~~~~~~~~~~~~~~~~~l~~~~~ 131 (308)
+=+.+|..|....+....++++++++.+++..+
T Consensus 14 V~rGlT~~El~~~~~~~~~~gl~~g~~l~~~~~ 46 (111)
T TIGR03750 14 VFRGLTADELGVAAGVGLAAGLVLGLLLALLAG 46 (111)
T ss_pred eecccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334468889888887777777777766544433
No 106
>PLN02922 prenyltransferase
Probab=38.71 E-value=3.2e+02 Score=25.24 Aligned_cols=32 Identities=19% Similarity=0.121 Sum_probs=21.0
Q ss_pred CCCcHHHHHHHHH-HHHHHHHHHhhcCCCChhh
Q psy14930 185 GRWEWATICYALP-VALNTEAILHSNNTRDLES 216 (308)
Q Consensus 185 ~~~~~~~~l~~l~-~~l~~~~~~~~~~~~D~e~ 216 (308)
+++++...++.+. ..+.-.+..+.||..|.+.
T Consensus 46 g~f~~~~~ll~ll~~~l~q~~~N~~NDy~D~~~ 78 (315)
T PLN02922 46 GLFDARRYGTLLLSSVLVITWLNLSNDAYDADT 78 (315)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHhhhhHhcc
Confidence 5667665544443 3445567788999999776
No 107
>COG5478 Predicted small integral membrane protein [Function unknown]
Probab=34.25 E-value=71 Score=25.81 Aligned_cols=95 Identities=15% Similarity=0.206 Sum_probs=51.5
Q ss_pred chhhhhhccccHHHHHHhhchhHHHHHHHHHHHHHHHHhhhCCC--------cccccHHHHHHHHHHHHHHHHHHHHhhh
Q psy14930 8 KNIWFTMLQEKLSSYLLALRPWSLSASLIPTLLGCALAVKLPIE--------KGQFSWIILFVTLLTVISVHCAGNVVNT 79 (308)
Q Consensus 8 ~~~~l~~~~~~~~~~l~~~Rp~~l~~~~~~~~~g~~la~~~~g~--------~~~~~~~~~ll~~l~~~~~~~~~n~~Nd 79 (308)
+.+|.+..-.+...| ..||..+...+..+++ +...|. +-.++-...+.+++.++++|...|- |
T Consensus 2 ~e~~f~r~a~~~A~~--~g~p~~fvv~~~~i~v-----w~~~gpl~~fsdtWQl~int~vaii~~l~v~liQNtq~r--D 72 (141)
T COG5478 2 VENWFDRFANRVADF--LGRPPAFVVALVAILV-----WAGSGPLFGFSDTWQLVINTSVAIITFLMVVLIQNTQNR--D 72 (141)
T ss_pred cchHHHHHHHHHHHH--hcCChHHHHHHHHHHH-----HHccCcccCcccceeEeeehhHHHHHHHHHhheeccccc--c
Confidence 345566443444433 4678776554433222 221121 0023555677888888898876443 4
Q ss_pred hhhhhcccCCC----CCCCCCceecccCCHHHHHHH
Q psy14930 80 YYDYVLGIDTS----RRSDDRTLVDHILSESELVSL 111 (308)
Q Consensus 80 y~D~~~g~D~~----~~~~~r~l~~g~ls~~~~~~~ 111 (308)
-++-+..+|+. +..++..+.-.+.++++....
T Consensus 73 ~aai~aKLDElir~~~e~~n~~VgIEh~~~~~i~~~ 108 (141)
T COG5478 73 TAAIQAKLDELIRSLREARNDVVGIEHLKPEEIEEI 108 (141)
T ss_pred HHHHHHHHHHHHHHhccccCceeeeccCCHHHHHHH
Confidence 44444445642 135566677777888877654
No 108
>TIGR02748 GerC3_HepT heptaprenyl diphosphate synthase component II. Members of this family are component II of the heterodimeric heptaprenyl diphosphate synthase. The trusted cutoff was set such that all members identified are encoded near to a recognizable gene for component I (in Pfam family pfam07307). This enzyme acts in menaquinone-7 isoprenoid side chain biosynthesis.
Probab=33.72 E-value=2.5e+02 Score=25.86 Aligned_cols=61 Identities=13% Similarity=0.080 Sum_probs=36.4
Q ss_pred ccHHHHHHhhchhHHHHHHHHHHHHHHHHhhhCCCcccccHHHHHHHHHHHHHHHHHHHHhhhhhhhhc
Q psy14930 17 EKLSSYLLALRPWSLSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHCAGNVVNTYYDYVL 85 (308)
Q Consensus 17 ~~~~~~l~~~Rp~~l~~~~~~~~~g~~la~~~~g~~~~~~~~~~ll~~l~~~~~~~~~n~~Ndy~D~~~ 85 (308)
.....|++.++-+|-.....|+-+|+.++-. +-..... +.- .+--+-.+-.+.||+.|+..
T Consensus 157 ~~~~~Y~~~i~~KTa~L~~~~~~~ga~~ag~------~~~~~~~-l~~-~g~~lG~aFQI~DDilD~~~ 217 (319)
T TIGR02748 157 QNLRTYLRRIKRKTALLIAASCQLGAIASGA------NEAIVKK-LYW-FGYYVGMSYQITDDILDFVG 217 (319)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHcCC------CHHHHHH-HHH-HHHHHHHHHHHHHHHHHccC
Confidence 3467899999888876666777788877632 1111111 111 11223345578999999963
No 109
>COG1033 Predicted exporters of the RND superfamily [General function prediction only]
Probab=30.31 E-value=3.3e+02 Score=28.48 Aligned_cols=61 Identities=13% Similarity=-0.004 Sum_probs=33.3
Q ss_pred HHhhchhHHHHHHHHHHHHHHHHhhh---CCCcccccHHHH-HHHHHHHHHHHHHHHHhhhhhhhhc
Q psy14930 23 LLALRPWSLSASLIPTLLGCALAVKL---PIEKGQFSWIIL-FVTLLTVISVHCAGNVVNTYYDYVL 85 (308)
Q Consensus 23 l~~~Rp~~l~~~~~~~~~g~~la~~~---~g~~~~~~~~~~-ll~~l~~~~~~~~~n~~Ndy~D~~~ 85 (308)
+..-|++.-...+.++++|.+.+... -|. ..+.... ...++-++...-+.+..|.|++..+
T Consensus 215 ~~fr~~~~~llpL~~~l~sv~~tlG~m~llG~--plt~~s~~~~~llIgiGidy~vh~~nr~~ee~~ 279 (727)
T COG1033 215 YVFRSVRRALLPLIIVLVSVLWTLGAMGLLGI--PLTITTSAVPPLLIGIGIDYGVHFHNRYEEERR 279 (727)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHhCC--CchhHHHHHHHHHhhhhhhHHHHHHHHHHHHHh
Confidence 33334433344555555565554321 131 3343333 3345556667778999999999864
No 110
>PF15169 DUF4564: Domain of unknown function (DUF4564)
Probab=29.84 E-value=25 Score=29.86 Aligned_cols=33 Identities=15% Similarity=0.029 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHhhcCCCChhhhHhcCCccc
Q psy14930 193 CYALPVALNTEAILHSNNTRDLESDRQVGIVTV 225 (308)
Q Consensus 193 l~~l~~~l~~~~~~~~~~~~D~e~D~~~G~~Tl 225 (308)
-+....+++..+.....+......|+..|+-|+
T Consensus 48 K~fyv~~c~fva~~n~edwee~iFdK~kg~V~l 80 (187)
T PF15169_consen 48 KLFYVAGCLFVALQNMEDWEEAIFDKSKGKVTL 80 (187)
T ss_pred HHHHHHHHHHHHHhcchhhhheeEeccCCEEEE
Confidence 334445666667766677777778999888765
No 111
>COG2981 CysZ Uncharacterized protein involved in cysteine biosynthesis [Amino acid transport and metabolism]
Probab=29.48 E-value=4.1e+02 Score=23.65 Aligned_cols=23 Identities=17% Similarity=0.312 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHhhcCCCChhh
Q psy14930 194 YALPVALNTEAILHSNNTRDLES 216 (308)
Q Consensus 194 ~~l~~~l~~~~~~~~~~~~D~e~ 216 (308)
+-.|...-....++.++++|++.
T Consensus 224 ~i~P~av~gat~~wv~~~~~r~~ 246 (250)
T COG2981 224 LIMPVAVAGATAMWVKEIRARHA 246 (250)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhh
Confidence 44566555566677776666553
No 112
>PRK10581 geranyltranstransferase; Provisional
Probab=28.33 E-value=27 Score=32.03 Aligned_cols=38 Identities=24% Similarity=0.203 Sum_probs=29.0
Q ss_pred HHHHHHhhcCCCChh-----------hhHhcCCcccceeecchhhHHHH
Q psy14930 201 NTEAILHSNNTRDLE-----------SDRQVGIVTVAILLGQSYSHVYY 238 (308)
Q Consensus 201 ~~~~~~~~~~~~D~e-----------~D~~~G~~Tl~v~lG~~~a~~l~ 238 (308)
+-.++.+.+|+.|+. .|.+.||.|+|+.+|.+.+....
T Consensus 215 lG~aFQI~DDilD~~g~~~~~GK~~g~Dl~~gk~T~p~l~~~e~a~~~a 263 (299)
T PRK10581 215 IGLAFQVQDDILDVVGDTATLGKRQGADQQLGKSTYPALLGLEQARKKA 263 (299)
T ss_pred HHHHHHHHHHHccccCChHHHCCCcchhhhcCCCCHHHHHHHHHHHHHH
Confidence 335667888888874 45678999999999988777644
No 113
>PF11990 DUF3487: Protein of unknown function (DUF3487); InterPro: IPR021877 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 121 to 136 amino acids in length. This protein has a conserved RLN sequence motif.
Probab=27.96 E-value=2.3e+02 Score=22.26 Aligned_cols=33 Identities=15% Similarity=0.019 Sum_probs=23.0
Q ss_pred ecccCCHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy14930 99 VDHILSESELVSLGVMLYLVSSAGFILLSYISP 131 (308)
Q Consensus 99 ~~g~ls~~~~~~~~~~~~~~~~~~~~~l~~~~~ 131 (308)
+=+.+|..|....+....+++++.++.+++..+
T Consensus 17 V~rGlT~~El~~~a~~~~~~g~~~gl~la~~~g 49 (121)
T PF11990_consen 17 VFRGLTADELGLAAGVGFVAGLVVGLPLALLTG 49 (121)
T ss_pred eecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334468889888777777777777776665544
No 114
>PF12046 DUF3529: Protein of unknown function (DUF3529); InterPro: IPR021919 This family of proteins is functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 176 to 190 amino acids in length.
Probab=27.81 E-value=2.9e+02 Score=23.28 Aligned_cols=17 Identities=6% Similarity=0.112 Sum_probs=10.4
Q ss_pred CCCCceecccCCHHHHH
Q psy14930 93 SDDRTLVDHILSESELV 109 (308)
Q Consensus 93 ~~~r~l~~g~ls~~~~~ 109 (308)
.++....+|.+.+..-.
T Consensus 66 ~~~~itFeG~V~pS~~l 82 (173)
T PF12046_consen 66 EGEVITFEGFVAPSWFL 82 (173)
T ss_pred cccEEEEEEEecCcHhH
Confidence 34466778888665433
No 115
>PF00348 polyprenyl_synt: Polyprenyl synthetase; InterPro: IPR000092 A variety of isoprenoid compounds are synthesized by various organisms. For example in eukaryotes the isoprenoid biosynthetic pathway is responsible for the synthesis of a variety of end products including cholesterol, dolichol, ubiquinone or coenzyme Q. In bacteria this pathway leads to the synthesis of isopentenyl tRNA, isoprenoid quinones, and sugar carrier lipids. Among the enzymes that participate in that pathway, are a number of polyprenyl synthetase enzymes which catalyze a 1'4-condensation between 5 carbon isoprene units. It has been shown [, , , , ] that all the above enzymes share some regions of sequence similarity. Two of these regions are rich in aspartic-acid residues and could be involved in the catalytic mechanism and/or the binding of the substrates.; GO: 0008299 isoprenoid biosynthetic process; PDB: 3AQC_B 3AQB_D 3Q1O_C 3LLW_B 3EFQ_A 3EGT_A 3DYG_A 2P1C_A 2OGD_A 2EWG_B ....
Probab=25.51 E-value=3e+02 Score=24.39 Aligned_cols=83 Identities=14% Similarity=-0.027 Sum_probs=47.1
Q ss_pred cccHHHHHHhhchhHHHHHHHHHHHHHHHHhhhCCCcccccHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCCC
Q psy14930 16 QEKLSSYLLALRPWSLSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHCAGNVVNTYYDYVLGIDTSRRSDD 95 (308)
Q Consensus 16 ~~~~~~~l~~~Rp~~l~~~~~~~~~g~~la~~~~g~~~~~~~~~~ll~~l~~~~~~~~~n~~Ndy~D~~~g~D~~~~~~~ 95 (308)
..+...|.+.+|-+|-...-.|+-+|+.++-. .-..... .--.+.-+-.+-.+.||+-|+..+-+...+..-
T Consensus 132 ~~~~~~y~~i~~~KTg~l~~~~~~~ga~lag~------~~~~~~~--l~~~g~~lG~afQi~DD~~d~~~~~~~~gK~~~ 203 (260)
T PF00348_consen 132 DPTEEEYLEIIRLKTGSLFALACQLGAILAGA------DEEQIEA--LREFGRHLGIAFQIRDDLLDLFGDEEELGKPVG 203 (260)
T ss_dssp STSHHHHHHHHHHHTHHHHHHHHHHHHHHTTS------GHHHHHH--HHHHHHHHHHHHHHHHHHHHHHSHHHHHSSTTT
T ss_pred cccHHHHHHHHhhcchHHHHHHHHHHHHhccc------hhHHHHH--HHHHHHHHHHHHhhhhhhhhccCcHHHhcccch
Confidence 34578899999999887778888888877632 2111111 111112233456788999999742211111112
Q ss_pred CceecccCCHH
Q psy14930 96 RTLVDHILSES 106 (308)
Q Consensus 96 r~l~~g~ls~~ 106 (308)
.-+.+|+.|..
T Consensus 204 ~Dl~~gk~Tlp 214 (260)
T PF00348_consen 204 SDLKEGKPTLP 214 (260)
T ss_dssp HHHHTTTSSHH
T ss_pred hHHhcCcccHH
Confidence 34666777643
No 116
>PRK10888 octaprenyl diphosphate synthase; Provisional
Probab=24.55 E-value=4.9e+02 Score=24.08 Aligned_cols=61 Identities=10% Similarity=-0.116 Sum_probs=36.6
Q ss_pred ccHHHHHHhhchhHHHHHHHHHHHHHHHHhhhCCCcccccHHHHHHHHHHHHHHHHHHHHhhhhhhhhc
Q psy14930 17 EKLSSYLLALRPWSLSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHCAGNVVNTYYDYVL 85 (308)
Q Consensus 17 ~~~~~~l~~~Rp~~l~~~~~~~~~g~~la~~~~g~~~~~~~~~~ll~~l~~~~~~~~~n~~Ndy~D~~~ 85 (308)
.+...|++.++-+|-...-.|+-+|+.+|-. +-..... +. -.+-.+-.+-.+.||+-|+..
T Consensus 158 ~s~~~y~~~i~~KTa~lf~~~~~~ga~lag~------~~~~~~~-l~-~~g~~lG~aFQi~DD~ld~~~ 218 (323)
T PRK10888 158 ITEENYMRVIYSKTARLFEAAAQCSGILAGC------TPEQEKG-LQ-DYGRYLGTAFQLIDDLLDYSA 218 (323)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHcCC------CHHHHHH-HH-HHHHHHHHHHHHHHHhhcccC
Confidence 3467899988888877766777788877632 1111111 11 111223345567899999973
No 117
>COG0142 IspA Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism]
Probab=23.72 E-value=3e+02 Score=25.43 Aligned_cols=55 Identities=22% Similarity=0.198 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHhhcCCCChhhhHhcCCcccceeecchhhHHHHHHHHHHHHH
Q psy14930 192 ICYALPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVYYAFLLFIPYI 247 (308)
Q Consensus 192 ~l~~l~~~l~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~~~ 247 (308)
.-.+..+=+.=+..++-.|+.| +.|.+.|+.|....+|+..|...--.+..-++-
T Consensus 69 ~~~aaavEliH~~SLiHDDvmD-~s~~RRG~pt~~~~~g~~~AIlaGD~L~~~Af~ 123 (322)
T COG0142 69 LDLAAAIELIHTASLIHDDLMD-DDDLRRGKPTVHAKFGEATAILAGDALLAAAFE 123 (322)
T ss_pred HHHHHHHHHHHHHHHHHhhccc-CCCccCCCCCchhHhccHHHHHHHHHHHHHHHH
Confidence 3344444445555666788866 568899999999999999888766655554443
No 118
>PF10003 DUF2244: Integral membrane protein (DUF2244); InterPro: IPR019253 This entry consists of various bacterial putative membrane proteins with no known function.
Probab=23.70 E-value=2.4e+02 Score=22.59 Aligned_cols=25 Identities=24% Similarity=0.068 Sum_probs=17.2
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHH
Q psy14930 101 HILSESELVSLGVMLYLVSSAGFIL 125 (308)
Q Consensus 101 g~ls~~~~~~~~~~~~~~~~~~~~~ 125 (308)
.-+|+++...+..++.+++++.++.
T Consensus 5 rSLs~~g~~~~~~~~~~~~~~~a~~ 29 (140)
T PF10003_consen 5 RSLSPRGFLIFIAILAAVSLIIAIA 29 (140)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3578999888777766666655544
No 119
>PF07062 Clc-like: Clc-like; InterPro: IPR010761 Clc proteins are a nine-member gene family of chloride channels that have diverse roles in the plasma membrane and in intracellular organelles, especially membrane excitability and the maintenance of osmotic balance [, ]. This family contains a number of Clc-like proteins that are approximately 250 residues long and their homologues. ; GO: 0016021 integral to membrane
Probab=22.90 E-value=5.1e+02 Score=22.53 Aligned_cols=32 Identities=9% Similarity=0.152 Sum_probs=23.4
Q ss_pred cCCCChhhhHhcCCcccceeecchhhHHHHHH
Q psy14930 209 NNTRDLESDRQVGIVTVAILLGQSYSHVYYAF 240 (308)
Q Consensus 209 ~~~~D~e~D~~~G~~Tl~v~lG~~~a~~l~~~ 240 (308)
++..+.++|++.+.-.-+.-+|-++|......
T Consensus 81 ~~~~~~~~~~~~~~~~~h~F~gWh~AvLil~~ 112 (211)
T PF07062_consen 81 EKVDNCDGNSNVGESETHCFFGWHKAVLILIS 112 (211)
T ss_pred HHHhhcccCCcccccccceehhHHHHHHHHHH
Confidence 33445568888888889999998877765543
No 120
>PF05360 YiaAB: yiaA/B two helix domain; InterPro: IPR008024 This domain consists of two transmembrane helices and a conserved linking section.
Probab=21.39 E-value=2.5e+02 Score=18.47 Aligned_cols=24 Identities=17% Similarity=-0.035 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCC
Q psy14930 190 ATICYALPVALNTEAILHSNNTRD 213 (308)
Q Consensus 190 ~~~l~~l~~~l~~~~~~~~~~~~D 213 (308)
...........+..++...++.||
T Consensus 30 KGy~~~~~l~~l~s~~tl~K~vRD 53 (53)
T PF05360_consen 30 KGYYAMGLLFLLFSAFTLQKTVRD 53 (53)
T ss_pred HHHHHHHHHHHHHHHHhhhhhcCC
Confidence 333333334444555666677776
Done!