Query psy14930
Match_columns 308
No_of_seqs 187 out of 1772
Neff 8.3
Searched_HMMs 29240
Date Fri Aug 16 16:07:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14930.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14930hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3m0g_A Farnesyl diphosphate sy 44.7 8.5 0.00029 34.0 1.7 42 201-242 208-260 (297)
2 3kra_B Geranyl diphosphate syn 38.8 81 0.0028 27.2 7.1 52 195-246 66-117 (274)
3 3lom_A Geranyltranstransferase 31.4 7.2 0.00025 34.8 -1.0 38 201-238 222-270 (313)
4 3lsn_A Geranyltranstransferase 31.4 7.1 0.00024 34.7 -1.0 41 202-242 216-267 (304)
5 3ts7_A Geranyltranstransferase 30.0 6.9 0.00024 35.1 -1.3 40 203-242 223-273 (324)
6 4f62_A Geranyltranstransferase 27.4 8.4 0.00029 34.4 -1.2 38 201-238 214-262 (317)
7 3p8l_A Geranyltranstransferase 27.1 8.6 0.0003 34.1 -1.2 40 203-242 220-270 (302)
8 3p8l_A Geranyltranstransferase 26.3 1.2E+02 0.0041 26.6 6.1 56 191-246 73-129 (302)
9 3llw_A Geranyltranstransferase 25.7 8.6 0.00029 34.2 -1.5 35 201-235 222-265 (311)
10 3qkc_B Geranyl diphosphate syn 22.1 2.5E+02 0.0086 24.0 7.3 50 195-246 71-120 (273)
11 3pde_A Farnesyl-diphosphate sy 21.8 11 0.00037 33.6 -1.7 35 201-235 217-262 (309)
12 3npk_A Geranyltranstransferase 20.6 2.1E+02 0.0071 24.8 6.5 53 194-246 65-118 (291)
No 1
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=44.70 E-value=8.5 Score=34.02 Aligned_cols=42 Identities=24% Similarity=0.159 Sum_probs=25.0
Q ss_pred HHHHHHhhcCCCChhh-----------hHhcCCcccceeecchhhHHHHHHHH
Q psy14930 201 NTEAILHSNNTRDLES-----------DRQVGIVTVAILLGQSYSHVYYAFLL 242 (308)
Q Consensus 201 ~~~~~~~~~~~~D~e~-----------D~~~G~~Tl~v~lG~~~a~~l~~~l~ 242 (308)
+-.+..+.+|+.|+.+ |.+.||.|+|+.+|.++|+....-..
T Consensus 208 lG~aFQI~DDilD~~~~~~~~GK~~g~Dl~~gK~T~p~l~~l~~a~~~~~~~~ 260 (297)
T 3m0g_A 208 LGLAFQIADDILDVEGNEEAAGKRLGKDAEAHKATFVSLLGLAGAKSRAADLV 260 (297)
T ss_dssp HHHHHHHHTTCC---------------------CCHHHHHCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHHHHHHHHHHHHHHH
Confidence 3356678899999865 66789999999999999888655433
No 2
>3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase, isoprene biosynthesis, isoprenyl pyrophosphate synthase, transferase; 1.90A {Mentha x piperita} PDB: 3krc_B* 3krf_B* 3kro_B* 3krp_B* 3oab_B* 3oac_B*
Probab=38.81 E-value=81 Score=27.22 Aligned_cols=52 Identities=12% Similarity=0.045 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHhhcCCCChhhhHhcCCcccceeecchhhHHHHHHHHHHHH
Q psy14930 195 ALPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVYYAFLLFIPY 246 (308)
Q Consensus 195 ~l~~~l~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~~ 246 (308)
+..+=++=.+.++-+|+++.+.|.+.|+.|.=.++|.+.|...--.+...++
T Consensus 66 A~aiEliH~aSLIHDDI~~dD~d~RRG~pt~h~~~G~~~AIlaGD~Ll~~Af 117 (274)
T 3kra_B 66 AAAIHLVHAAAYVHEHLPLTDGSRPVSKPAIQHKYGPNVELLTGDGIVPFGF 117 (274)
T ss_dssp HHHHHHHHHHHHHHHTCCCSSSSSCCCSSCCCCSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcccCCccCCCCCCchhhcChHHHHHHHHHHHHHHH
Confidence 3334445566677899995555667999999999999876554433433333
No 3
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}
Probab=31.37 E-value=7.2 Score=34.79 Aligned_cols=38 Identities=16% Similarity=0.034 Sum_probs=0.0
Q ss_pred HHHHHHhhcCCCChhh-----------hHhcCCcccceeecchhhHHHH
Q psy14930 201 NTEAILHSNNTRDLES-----------DRQVGIVTVAILLGQSYSHVYY 238 (308)
Q Consensus 201 ~~~~~~~~~~~~D~e~-----------D~~~G~~Tl~v~lG~~~a~~l~ 238 (308)
+-.++.+.+|+.|+.+ |.+.||.|+|+.+|.++|+...
T Consensus 222 lGlaFQI~DDilD~~gd~~~~GK~~g~Dl~~gK~T~p~l~~l~~a~~~a 270 (313)
T 3lom_A 222 IGLVFQMQDDYLDLYAPTQILGKGRSSDQANQKTTFATLFNKQQLEEEI 270 (313)
T ss_dssp HHHHHHHHHHHHHHHCC---------------CCCHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCHHhhCCCCcchhhcCCccHHHHHHHHHHHHHH
No 4
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*
Probab=31.37 E-value=7.1 Score=34.66 Aligned_cols=41 Identities=27% Similarity=0.174 Sum_probs=26.3
Q ss_pred HHHHHhhcCCCChhh-----------hHhcCCcccceeecchhhHHHHHHHH
Q psy14930 202 TEAILHSNNTRDLES-----------DRQVGIVTVAILLGQSYSHVYYAFLL 242 (308)
Q Consensus 202 ~~~~~~~~~~~D~e~-----------D~~~G~~Tl~v~lG~~~a~~l~~~l~ 242 (308)
-.++.+.+|+.|+.+ |.+.||.|+|+.+|.++|+....-..
T Consensus 216 GlaFQI~DDilD~~~~~~~~GK~~g~Dl~egK~T~p~l~~l~~a~~~a~~~~ 267 (304)
T 3lsn_A 216 GLAFQVQDDILDVESDTATLGKRQGADIARDKPTYPALLGLAAAKEYALELR 267 (304)
T ss_dssp HHHHHHHHHHHHHHHHHHHC------------CCHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCChHHhCCCcccHHhcCCccHHHHHHHHHHHHHHHHHH
Confidence 345677788888755 66789999999999998887665443
No 5
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus}
Probab=30.01 E-value=6.9 Score=35.08 Aligned_cols=40 Identities=23% Similarity=0.099 Sum_probs=25.2
Q ss_pred HHHHhhcCCCChh-----------hhHhcCCcccceeecchhhHHHHHHHH
Q psy14930 203 EAILHSNNTRDLE-----------SDRQVGIVTVAILLGQSYSHVYYAFLL 242 (308)
Q Consensus 203 ~~~~~~~~~~D~e-----------~D~~~G~~Tl~v~lG~~~a~~l~~~l~ 242 (308)
.++.+.+|+.|+. .|.+.||.|+|+.+|.++|+....-..
T Consensus 223 lAFQI~DDiLD~~~d~~~~GK~~g~Dl~egK~T~p~l~gle~a~~~a~~~~ 273 (324)
T 3ts7_A 223 LAFQIQDDILDEESDTQTLGKTRGKDRDHNKPNYPALLGLSGAKEKAEEMH 273 (324)
T ss_dssp HHHHHHHHHHHHTCC---------------CCCHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHHHHHHHHHHHHHHH
Confidence 4556667776664 477889999999999998887665443
No 6
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP}
Probab=27.44 E-value=8.4 Score=34.41 Aligned_cols=38 Identities=24% Similarity=0.141 Sum_probs=0.0
Q ss_pred HHHHHHhhcCCCCh-----------hhhHhcCCcccceeecchhhHHHH
Q psy14930 201 NTEAILHSNNTRDL-----------ESDRQVGIVTVAILLGQSYSHVYY 238 (308)
Q Consensus 201 ~~~~~~~~~~~~D~-----------e~D~~~G~~Tl~v~lG~~~a~~l~ 238 (308)
+-.++.+.+|+.|+ -.|.+.||.|+|+.+|.++|+...
T Consensus 214 lGlAFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~gle~a~~~a 262 (317)
T 4f62_A 214 IGLAFQVQDDIIDLTSDTETLGKTQFSDAEANKATYPKLLGLDGAKALV 262 (317)
T ss_dssp HHHHHHHHHHHHHTC----------------CCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCChHhhCCCcchHHhcCCCcHHHHHHHHHHHHHH
No 7
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis}
Probab=27.13 E-value=8.6 Score=34.07 Aligned_cols=40 Identities=20% Similarity=0.120 Sum_probs=23.4
Q ss_pred HHHHhhcCCCCh-----------hhhHhcCCcccceeecchhhHHHHHHHH
Q psy14930 203 EAILHSNNTRDL-----------ESDRQVGIVTVAILLGQSYSHVYYAFLL 242 (308)
Q Consensus 203 ~~~~~~~~~~D~-----------e~D~~~G~~Tl~v~lG~~~a~~l~~~l~ 242 (308)
.+..+.+|+.|+ ..|.+.||.|+|+.+|.++|+....-..
T Consensus 220 laFQI~DDilD~~~d~~~~GK~~g~Dl~egK~T~p~l~~l~~a~~~~~~~~ 270 (302)
T 3p8l_A 220 LAFQIRDDLLDATSTEADLGKKVGRDEALNKSTYPALLGIAGAKDALTHQL 270 (302)
T ss_dssp HHHHHHHHHHHTTC-----------------CCHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCHHHhCCChhhHHhcCCCcHHHHHHHHHHHHHHHHHH
Confidence 345566666665 4578889999999999999987665443
No 8
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis}
Probab=26.28 E-value=1.2e+02 Score=26.57 Aligned_cols=56 Identities=14% Similarity=0.082 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCChhhh-HhcCCcccceeecchhhHHHHHHHHHHHH
Q psy14930 191 TICYALPVALNTEAILHSNNTRDLESD-RQVGIVTVAILLGQSYSHVYYAFLLFIPY 246 (308)
Q Consensus 191 ~~l~~l~~~l~~~~~~~~~~~~D~e~D-~~~G~~Tl~v~lG~~~a~~l~~~l~~~~~ 246 (308)
..-++..+=++=.+.++-+|+|++++| .+.|+.|.-.++|.+.|...--.+...++
T Consensus 73 ~~~~A~avEliH~asLIHDDIP~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~ 129 (302)
T 3p8l_A 73 DYQVAASLEMIHTYSLIHDDLPAMDDDDLRRGKPTNHKVFGEATAILAGDGLLTGAF 129 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCchhccCCCccCCCcchhhhcChHHHHHHHHHHHHHHH
Confidence 344455555566677788999766665 57899999999999877654444444343
No 9
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A*
Probab=25.70 E-value=8.6 Score=34.24 Aligned_cols=35 Identities=14% Similarity=0.112 Sum_probs=0.0
Q ss_pred HHHHHHhhcCCCChhhhH---------hcCCcccceeecchhhH
Q psy14930 201 NTEAILHSNNTRDLESDR---------QVGIVTVAILLGQSYSH 235 (308)
Q Consensus 201 ~~~~~~~~~~~~D~e~D~---------~~G~~Tl~v~lG~~~a~ 235 (308)
+-.++.+.+|+.|+.+|. +.||.|+|+.+|.+++.
T Consensus 222 lGlaFQI~DDiLD~~gd~~~~GK~~g~~~gK~T~p~l~~l~~a~ 265 (311)
T 3llw_A 222 MGLCFQVLDDIIDVTQDEEESGKTTHLDSAKNSFVNLLGLERAN 265 (311)
T ss_dssp HHHHHHHHHHHHHHHC-------------CCSCHHHHHCHHHHH
T ss_pred HHHHHHHHHHHHhccCChHHHCcccccccCcchHHHHHHHHHHH
No 10
>3qkc_B Geranyl diphosphate synthase small subunit; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.20A {Antirrhinum majus}
Probab=22.10 E-value=2.5e+02 Score=23.97 Aligned_cols=50 Identities=10% Similarity=-0.035 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHhhcCCCChhhhHhcCCcccceeecchhhHHHHHHHHHHHH
Q psy14930 195 ALPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVYYAFLLFIPY 246 (308)
Q Consensus 195 ~l~~~l~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~~ 246 (308)
+..+=++=.+.++-+|++|.+. +.|+.|.-.++|.+.|...--.+...++
T Consensus 71 A~aiEliH~aSLIHDDI~D~d~--RRG~pt~h~~~G~~~AIlaGD~Ll~~Af 120 (273)
T 3qkc_B 71 AAAVHLMHVAAYTHENLPLTDG--PMSKSEIQHKFDPNIELLTGDGIIPFGL 120 (273)
T ss_dssp HHHHHHHHHHHHHHHSCCBTTB--CSSSSCCCCSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCcccCcc--CCCCCCchhhcCHHHHHHHHHHHHHHHH
Confidence 3334445556677899999865 6789999999999876654434444333
No 11
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*
Probab=21.82 E-value=11 Score=33.60 Aligned_cols=35 Identities=17% Similarity=0.007 Sum_probs=0.0
Q ss_pred HHHHHHhhcCCCCh-----------hhhHhcCCcccceeecchhhH
Q psy14930 201 NTEAILHSNNTRDL-----------ESDRQVGIVTVAILLGQSYSH 235 (308)
Q Consensus 201 ~~~~~~~~~~~~D~-----------e~D~~~G~~Tl~v~lG~~~a~ 235 (308)
+-.++.+.+|+.|+ -.|.+.||.|+|+.+|.+++.
T Consensus 217 lGlaFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~al~~a~ 262 (309)
T 3pde_A 217 FGLAFQIYDDILDVVSSPAEMGKATQKDADEAKNTYPGKLGLIGAN 262 (309)
T ss_dssp HHHHHHHHHHHHHHHCC-----------CTTTSSSHHHHHCHHHHH
T ss_pred HHHHHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHHHHHHhH
No 12
>3npk_A Geranyltranstransferase; isoprene biosynthesis, SGX, structural genomics protein structure initiative; 1.50A {Campylobacter jejuni}
Probab=20.57 E-value=2.1e+02 Score=24.84 Aligned_cols=53 Identities=13% Similarity=0.078 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHhhcCCCChhhh-HhcCCcccceeecchhhHHHHHHHHHHHH
Q psy14930 194 YALPVALNTEAILHSNNTRDLESD-RQVGIVTVAILLGQSYSHVYYAFLLFIPY 246 (308)
Q Consensus 194 ~~l~~~l~~~~~~~~~~~~D~e~D-~~~G~~Tl~v~lG~~~a~~l~~~l~~~~~ 246 (308)
++..+=++=.+.++-+|+|.+++| .+.|+.|.-.++|++.|...--.+...++
T Consensus 65 ~A~aiEliH~aSLIHDDIp~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~ 118 (291)
T 3npk_A 65 VALALEFIHTYSLIHDDLPAMDNADFRRGIPTLHKSYDETTAILVGDALNTEAF 118 (291)
T ss_dssp HHHHHHHHHHHHHHHHTSTTTTCCSEETTEECHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCcccccCCCCCCCCCchhhhcCHHHHHHHHHHHHHHHH
Confidence 344444455666778999766554 57799999999999877654444444333
Done!