Query psy14930
Match_columns 308
No_of_seqs 187 out of 1772
Neff 8.3
Searched_HMMs 13730
Date Fri Aug 16 16:07:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14930.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/14930hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1v4ea_ a.128.1.1 (A:) Octopre 39.3 12 0.00091 30.3 4.1 65 180-245 44-108 (280)
2 d1rqja_ a.128.1.1 (A:) Farnesy 37.9 30 0.0022 28.1 6.4 55 192-246 67-122 (299)
3 d1iwga8 f.35.1.1 (A:513-566,A: 33.8 82 0.006 24.0 8.3 43 39-83 95-138 (222)
4 d1rtra_ a.128.1.1 (A:) Farnesy 32.9 11 0.00077 31.0 2.6 34 203-236 211-255 (290)
5 d1rtra_ a.128.1.1 (A:) Farnesy 30.9 30 0.0022 28.0 5.2 52 195-246 67-119 (290)
6 d1rqja_ a.128.1.1 (A:) Farnesy 21.5 5.9 0.00043 32.8 -1.3 35 203-237 217-262 (299)
7 d2r6gf1 e.70.1.1 (F:13-260) Ma 13.7 85 0.0062 24.7 4.2 23 144-166 38-62 (248)
8 d1te7a_ b.122.1.7 (A:) Hypothe 13.4 33 0.0024 23.2 1.3 16 213-228 11-26 (103)
9 d1ezfa_ a.128.1.2 (A:) Squalen 8.6 38 0.0028 28.0 0.2 24 204-227 173-196 (333)
10 d1xu2r_ g.24.1.2 (R:) Tumor ne 5.6 44 0.0032 17.6 -0.6 8 77-84 3-10 (36)
No 1
>d1v4ea_ a.128.1.1 (A:) Octoprenyl-diphosphate synthase {Thermotoga maritima [TaxId: 2336]}
Probab=39.32 E-value=12 Score=30.35 Aligned_cols=65 Identities=15% Similarity=0.103 Sum_probs=42.1
Q ss_pred HHHhcCCCcHHHHHHHHHHHHHHHHHHhhcCCCChhhhHhcCCcccceeecchhhHHHHHHHHHHH
Q psy14930 180 FMSQTGRWEWATICYALPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVYYAFLLFIP 245 (308)
Q Consensus 180 ~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~ 245 (308)
+-+..+..+...+-.+..+=++=.+.++-+|+.| ++|.+.|+.|.-..+|.+.+...--.+...+
T Consensus 44 ~~~~g~~~~~~~~~~AaaiEliH~asLIhDDi~D-~s~~RRG~pt~h~~~g~~~ail~gd~l~~~a 108 (280)
T d1v4ea_ 44 FKNRGVEIGEDAISSLAALELVHLASLLHDDVID-GARFRRGKETINFMYGDKAAVAAGDLVLVSA 108 (280)
T ss_dssp HHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-TCSEETTEECHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHcCCCccHHHHHHHHHHHHHHHHHHHhhhHhh-hcccccccchhhhccchhhhhhhHHHHHHhh
Confidence 3344555444444444444555566667788888 6788999999999999988765544444333
No 2
>d1rqja_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Escherichia coli [TaxId: 562]}
Probab=37.86 E-value=30 Score=28.11 Aligned_cols=55 Identities=15% Similarity=0.135 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHhhcCCCChhh-hHhcCCcccceeecchhhHHHHHHHHHHHH
Q psy14930 192 ICYALPVALNTEAILHSNNTRDLES-DRQVGIVTVAILLGQSYSHVYYAFLLFIPY 246 (308)
Q Consensus 192 ~l~~l~~~l~~~~~~~~~~~~D~e~-D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~~ 246 (308)
.-++..+=++=.+.++-+|++|.+. |.+.|+.|.-..+|.+.|...--.+...++
T Consensus 67 ~~~A~aiEllH~asLiHDDI~d~d~~~~RRG~pt~h~~~G~~~AIl~Gd~l~~~a~ 122 (299)
T d1rqja_ 67 DAPAAAVECIHAYSLIHDDLPAMDDDDLRRGLPTCHVKFGEANAILAGDALQTLAF 122 (299)
T ss_dssp HHHHHHHHHHHHHHHHHHTSTTTTCCCEETTEECHHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccchhhhhhhcccccccceeeeCcchhhhhcchHHHHHH
Confidence 3344445556667778899999887 589999999999999988665554444444
No 3
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=33.78 E-value=82 Score=23.99 Aligned_cols=43 Identities=16% Similarity=-0.016 Sum_probs=24.7
Q ss_pred HHHHHHHhhhCCCcccccHHHH-HHHHHHHHHHHHHHHHhhhhhhh
Q psy14930 39 LLGCALAVKLPIEKGQFSWIIL-FVTLLTVISVHCAGNVVNTYYDY 83 (308)
Q Consensus 39 ~~g~~la~~~~g~~~~~~~~~~-ll~~l~~~~~~~~~n~~Ndy~D~ 83 (308)
++|...+....|. ++|.... ....+.+.....+..+.++|.+.
T Consensus 95 ~~~~~~~l~~~g~--~~~~~~~~g~i~l~Gi~v~~~i~~~~~~~~~ 138 (222)
T d1iwga8 95 VIGALLAATFRGL--TNDVYFQVGLLTTIGLSAKNAILIVEFAKDL 138 (222)
T ss_dssp HHHHHHHHHHTTC--CBCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCC--chhhhhcccccchhhhhhhHHHHHHHHhccc
Confidence 3344444443442 6675553 34455666777777787777664
No 4
>d1rtra_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Staphylococcus aureus [TaxId: 1280]}
Probab=32.94 E-value=11 Score=30.96 Aligned_cols=34 Identities=21% Similarity=0.085 Sum_probs=20.0
Q ss_pred HHHHhhcCCCChh-----------hhHhcCCcccceeecchhhHH
Q psy14930 203 EAILHSNNTRDLE-----------SDRQVGIVTVAILLGQSYSHV 236 (308)
Q Consensus 203 ~~~~~~~~~~D~e-----------~D~~~G~~Tl~v~lG~~~a~~ 236 (308)
.+..+.+|+-|+. .|.+.||+|+|+.+|.+.+..
T Consensus 211 ~aFQi~DD~lD~~g~~~~~GK~~g~Di~~gK~T~p~i~a~~~a~~ 255 (290)
T d1rtra_ 211 MMFQIKDDLLDCYGDEAKLGKKVGSDLENNKSTYVSLLGKDGAED 255 (290)
T ss_dssp HHHHHHHHHHHHHHHHCC-------------CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcchHhhccCcccHhhcCCccHHHHHHHHHHHH
Confidence 3556777777764 577789999999999876543
No 5
>d1rtra_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Staphylococcus aureus [TaxId: 1280]}
Probab=30.94 E-value=30 Score=27.99 Aligned_cols=52 Identities=15% Similarity=0.161 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHhhcCCCChhhh-HhcCCcccceeecchhhHHHHHHHHHHHH
Q psy14930 195 ALPVALNTEAILHSNNTRDLESD-RQVGIVTVAILLGQSYSHVYYAFLLFIPY 246 (308)
Q Consensus 195 ~l~~~l~~~~~~~~~~~~D~e~D-~~~G~~Tl~v~lG~~~a~~l~~~l~~~~~ 246 (308)
+..+=++=.+.++-+|++|+++| .+.|+.|.-.++|.+.|...--.+...++
T Consensus 67 A~avEllH~asLIHDDI~d~D~~~~RRg~pt~~~~~g~~~Ail~Gd~l~~~a~ 119 (290)
T d1rtra_ 67 AIALEMIHTYSLIHDDLPAMDNDDYRRGKLTNHKVYGEWTAILAGDALLTKAF 119 (290)
T ss_dssp HHHHHHHHHHHHHHHHSTTTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcchhhhhhhhhhhcchhhHHHhhhhHHHHcCcchhHHHH
Confidence 33334555666778999988775 58999999999999977665444443333
No 6
>d1rqja_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Escherichia coli [TaxId: 562]}
Probab=21.53 E-value=5.9 Score=32.77 Aligned_cols=35 Identities=26% Similarity=0.278 Sum_probs=26.5
Q ss_pred HHHHhhcCCCChh-----------hhHhcCCcccceeecchhhHHH
Q psy14930 203 EAILHSNNTRDLE-----------SDRQVGIVTVAILLGQSYSHVY 237 (308)
Q Consensus 203 ~~~~~~~~~~D~e-----------~D~~~G~~Tl~v~lG~~~a~~l 237 (308)
.+..+.+|+-|+. .|.+.||.|+|+.+|.+++...
T Consensus 217 iaFQi~DD~lD~~~~~~~~GK~~g~Dl~egK~Tlp~i~~le~a~~~ 262 (299)
T d1rqja_ 217 LAFQVQDDILDVVGDTATLGKRQGADQQLGKSTYPALLGLEQARKK 262 (299)
T ss_dssp HHHHHHHHHHHHHSCHHHHSSCTTHHHHHTCCCHHHHHCHHHHHHH
T ss_pred HHHHHHHHHHhhccchhhcCCchhhHHHCCChhHHHHHHHHHHHHH
Confidence 4556777777764 4778899999999998877553
No 7
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=13.74 E-value=85 Score=24.68 Aligned_cols=23 Identities=9% Similarity=0.190 Sum_probs=13.6
Q ss_pred HHHHheeccCCC--CCCcccchhHH
Q psy14930 144 GLSSSFLYSGCL--GLKYTALGDVL 166 (308)
Q Consensus 144 ~~~~~~~Ys~~p--~lk~~~lge~~ 166 (308)
..++.|.|..++ ++||.--|-++
T Consensus 38 ~~~~~~vy~s~r~~p~kyi~PG~~~ 62 (248)
T d2r6gf1 38 SSAGLYIFANRKAYAWRYVYPGMAG 62 (248)
T ss_dssp HHHHHHHHSSSCCTTHHHHHHHHHH
T ss_pred HHheEEEEEccCccceehhhhHHHH
Confidence 345667777654 66766555443
No 8
>d1te7a_ b.122.1.7 (A:) Hypothetical protein YqfB {Escherichia coli [TaxId: 562]}
Probab=13.44 E-value=33 Score=23.23 Aligned_cols=16 Identities=25% Similarity=0.318 Sum_probs=13.8
Q ss_pred ChhhhHhcCCccccee
Q psy14930 213 DLESDRQVGIVTVAIL 228 (308)
Q Consensus 213 D~e~D~~~G~~Tl~v~ 228 (308)
-.|.|..+||||+-+|
T Consensus 11 Rfe~dIlsGkKTITIR 26 (103)
T d1te7a_ 11 RFQDDILAGRKTITIR 26 (103)
T ss_dssp HHHHHHHTCCCEEEEE
T ss_pred hhhHHHhcCCceEEec
Confidence 4689999999999876
No 9
>d1ezfa_ a.128.1.2 (A:) Squalene synthase {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.56 E-value=38 Score=28.01 Aligned_cols=24 Identities=25% Similarity=0.137 Sum_probs=20.9
Q ss_pred HHHhhcCCCChhhhHhcCCcccce
Q psy14930 204 AILHSNNTRDLESDRQVGIVTVAI 227 (308)
Q Consensus 204 ~~~~~~~~~D~e~D~~~G~~Tl~v 227 (308)
+..+.|=+||+.+|.+.|+.-+|.
T Consensus 173 AlQltNIlRDi~eD~~~gR~YlP~ 196 (333)
T d1ezfa_ 173 FLQKTNIIRDYLEDQQGGREFWPQ 196 (333)
T ss_dssp HHHHHHHHHTHHHHHHHTCCCSCH
T ss_pred HHHHHHHHHhhHHHHhCCcEECCH
Confidence 556778889999999999998885
No 10
>d1xu2r_ g.24.1.2 (R:) Tumor necrosis factor receptor superfamily member 17, BCMA {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.57 E-value=44 Score=17.62 Aligned_cols=8 Identities=38% Similarity=0.820 Sum_probs=5.9
Q ss_pred hhhhhhhh
Q psy14930 77 VNTYYDYV 84 (308)
Q Consensus 77 ~Ndy~D~~ 84 (308)
-|+|||-.
T Consensus 3 ~neyfdsl 10 (36)
T d1xu2r_ 3 QNEYFDSL 10 (36)
T ss_dssp TTEEEETT
T ss_pred hhHHHHHH
Confidence 48888864
Done!