RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14930
(308 letters)
>gnl|CDD|224491 COG1575, MenA, 1,4-dihydroxy-2-naphthoate octaprenyltransferase
[Coenzyme metabolism].
Length = 303
Score = 128 bits (325), Expect = 3e-35
Identities = 83/304 (27%), Positives = 138/304 (45%), Gaps = 15/304 (4%)
Query: 13 TMLQEKLSSYLLALRPWSLSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHC 72
+ K +L RP +L A++ P ++G ALA F+ ++ + L+ I +
Sbjct: 2 SQKTSKTQLWLELARPKTLPAAIAPVIVGTALAF---WYGKSFNLLVALLALIAAILLQI 58
Query: 73 AGNVVNTYYDYVLGIDTSRRSDDRTLVDHILSESEL---VSLGVMLYLVSSAGFILLSYI 129
N+ N Y+DY G DT DR ++ + + L + L+L++ + +
Sbjct: 59 LVNLANDYFDYKKGTDT--HGPDRLKQSGLIVRQSMKPALILSLALFLLAGLALLGVILA 116
Query: 130 SPAKMEHLAAVFFCGLSSSFLYSGCLGLKYTALGDVLILMIFGPITVLFAFMSQTGRWEW 189
+ + L C + G L Y LG++ + + FGP+ VL A+ QTGR W
Sbjct: 117 ALSDWLVLLLGLLCIAAGILYTGGPFPLGYMGLGEIFVGVFFGPLIVLGAYYIQTGRLSW 176
Query: 190 ATICYALPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVYYAFLLFIPYIVF 249
A + +LPV + IL +NN RD+E D + G T+A+ LG+ + YA LL + Y +
Sbjct: 177 AILLPSLPVGILIANILLANNLRDIEEDIRNGKYTLAVRLGRKNARKLYAALLVVAY-LA 235
Query: 250 VVWGM---NHSYYYLLPLVTLKSAFSIEKQFRC---PDKIHLVPKLTAKLNLYFGFLYVV 303
+V + + LL L+ L A + R P + + K T K NL + L V
Sbjct: 236 IVIFVILGLFPVWGLLFLLALPLAIRAARPVRQNQVPATLVPMLKNTVKANLLWNLLLAV 295
Query: 304 AVTL 307
+ L
Sbjct: 296 GILL 299
>gnl|CDD|235695 PRK06080, PRK06080, 1,4-dihydroxy-2-naphthoate
octaprenyltransferase; Validated.
Length = 293
Score = 126 bits (319), Expect = 2e-34
Identities = 90/304 (29%), Positives = 144/304 (47%), Gaps = 26/304 (8%)
Query: 18 KLSSYLLALRPWSLSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHCAGNVV 77
++L RP +L A+ P L+G ALA L G F ++ + LL + + A N+
Sbjct: 2 TFKAWLELARPKTLPAAFAPVLVGTALAYWL----GSFHPLLALLALLAALLLQIATNLA 57
Query: 78 NTYYDYVLGIDTSRRSDD-RTLVDHILSESELVSLGVMLYLVSS-AGFILLSYISPAKME 135
N Y DYV G DT R R + +S ++ + + +++ G L++
Sbjct: 58 NDYGDYVKGTDTEDRVGPLRAIGRGGISPKQVKRAAIAFFGLAALLGLYLVAVSGWW--- 114
Query: 136 HLAAVFFCGLSS---SFLYSGCLGLK---YTALGDVLILMIFGPITVLFAFMSQTGRWEW 189
L + GL + LY+G G K YT LG++ + + FG + VL + Q G +
Sbjct: 115 -LLLL---GLLCIAAAILYTG--GPKPYGYTGLGELFVGVFFGLVIVLGTYYLQAGTVDS 168
Query: 190 ATICYALPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVYYAFLLFIPYIVF 249
A ALP L A+L +NN RD+E+DR+ G T+A+ LG + +A LL + Y+
Sbjct: 169 AVFLPALPCGLLIGAVLLANNIRDIETDRENGKNTLAVRLGDKNARRLHAALLALAYLCI 228
Query: 250 VV-WGMN-HSYYYLLPLVTLKSAFSIEKQFRC-PDKIHLVP--KLTAKLNLYFGFLYVVA 304
V+ + S + LL L++L A + L+P K T K NL FG L+ +
Sbjct: 229 VLLALLGLASPWGLLFLLSLPLAVKAARPVLRKQKPETLIPALKATGKTNLLFGLLFAIG 288
Query: 305 VTLA 308
+ L+
Sbjct: 289 LLLS 292
>gnl|CDD|216260 pfam01040, UbiA, UbiA prenyltransferase family.
Length = 259
Score = 92.2 bits (229), Expect = 6e-22
Identities = 76/273 (27%), Positives = 124/273 (45%), Gaps = 14/273 (5%)
Query: 31 LSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHCAGNVVNTYYDYVLGIDTS 90
L +L+P L G ALA G ++L + LL ++ + AGNV+N Y+DY + D
Sbjct: 1 LPLALLPVLAGLALA-----AGGVLDLLLLLLLLLALLLLQAAGNVLNDYFDYEIDADNP 55
Query: 91 RRSDDRTLVDHILSESELVSLGVMLYLVSSAGFILLSYISPAKMEHLAAVFFCGLSSSFL 150
+ D R L +S E + LG+ L L+ +LL + L + GL L
Sbjct: 56 NKPD-RPLPSGRISPREALLLGLALLLLGLLLALLLGPL-------LLLLGLLGLLLGLL 107
Query: 151 YSGCLGLKYTALGDVLILMIFGPITVLFAFMSQTGRWEWATICYALPVALNTEAILHSNN 210
YS L LK L L++ + + +L + G + ALPV L + AIL +N+
Sbjct: 108 YSPPLRLKRRPLLGELVVGLAFGLLILLGAYAVGGDIPSPLLLLALPVFLLSLAILLTND 167
Query: 211 TRDLESDRQVGIVTVAILLGQSYSHVYYAFLLFIPYIVFVVWGMNHSYYYLLPLVTLKSA 270
RD+E DR+ GI T+ + LG+ + YA LL ++ ++ + + LL V L A
Sbjct: 168 IRDVEGDRKAGIRTLPVRLGRKRALALYALLLAAALLLLLLLLLLLAPLLLLLAVLL-LA 226
Query: 271 FSIEKQFRCPDKIHLVPKLTAKLNLYFGFLYVV 303
++ R + + L + F ++
Sbjct: 227 LALLVAARLLRRRNPEEPARTFLFIALLFGLLL 259
>gnl|CDD|129834 TIGR00751, menA, 1,4-dihydroxy-2-naphthoate octaprenyltransferase.
This membrane-associated enzyme converts
1,4-dihydroxy-2-naphthoic acid (DHNA) to
demethylmenaquinone, a step in menaquinone biosynthesis
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Menaquinone and ubiquinone].
Length = 284
Score = 86.1 bits (213), Expect = 2e-19
Identities = 62/223 (27%), Positives = 102/223 (45%), Gaps = 13/223 (5%)
Query: 27 RPWSLSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHCAGNVVNTYYDYVLG 86
RP +L ++ P + G ALA L F W++ + L T + + N N Y D + G
Sbjct: 1 RPKTLPLAIAPIVAGTALAAWL----HAFVWLVALLALATAVLLQILSNYANDYGDGIKG 56
Query: 87 IDTSRRSDDRTLVDHILSESELVSLGVMLYLVSSA----GFILLSYISPAKMEHLAAVFF 142
DT R V L V ++ + A LL+ + + + A+
Sbjct: 57 SDTDDRIGPLRGVQKGLITPREVKTALITSVALGALSGLVLALLAAPNLSDLFWFIALGA 116
Query: 143 CGLSSSFLYSGCLGLK---YTALGDVLILMIFGPITVLFAFMSQTGRWEWATICYALPVA 199
++++ Y+ G K Y LGD+ +L+ FGP+ VL Q R +W I A+
Sbjct: 117 LCIAAAITYTV--GSKPYGYAGLGDISVLVFFGPLAVLGTQYLQAHRVDWVGILPAVATG 174
Query: 200 LNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVYYAFLL 242
L A+L+ NN RD+ +D + G T+A+ LG + + +Y+ LL
Sbjct: 175 LLACAVLNINNLRDIPTDARAGKNTLAVRLGDARTRMYHQGLL 217
>gnl|CDD|180323 PRK05951, ubiA, prenyltransferase; Reviewed.
Length = 296
Score = 85.2 bits (211), Expect = 4e-19
Identities = 73/287 (25%), Positives = 120/287 (41%), Gaps = 15/287 (5%)
Query: 27 RPWSLSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHCAGNVVNTYYDYVLG 86
RPWS + I A F ++ + LL +H + NV N Y DYVL
Sbjct: 12 RPWSFVMTAIVAFFSIAYG---YYLFRSFDPLLGALMLLGYFLLHASLNVFNDYKDYVLD 68
Query: 87 IDTSRRSDDRTLVDHILSESELVSLGVMLYLVSSAGFILLSY-ISPAKMEHLAAVFF--C 143
D + R H + ++ +++LG + L + G I L S + AV
Sbjct: 69 CDHHETTGYRQ---HPI-QAGIMTLGHLRVLGIALGAIALQLGWSLVLDRGIGAVTLALL 124
Query: 144 GLSSSFLYSGC-LGLKYTALGDVLILMIFGPITVLFAFMSQTGRWEWATICYALPVALNT 202
G+ Y G LKY LG+ L+ + + V+ G + +P+ L
Sbjct: 125 GVFLWTCYMGPPFFLKYRWLGEHLVFYAWSHMLVMGLIYVWLGNLSSPNLLAGVPLGLLM 184
Query: 203 EAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVYYAFLLFIPYIVFVVWGMNHSY--YY 260
+L SNN RD+E D + GI T+A++ G+ Y F L PY++ + +
Sbjct: 185 ALVLLSNNLRDIEDDERKGIPTLAVIFGRR-GAALYIFALLSPYVILQILLIAILTPLIS 243
Query: 261 LLPLVTLKSAFSIEKQFRCPDKIHLVPKLTAKLNLYFGFLYVVAVTL 307
L L++L A+++ + T +L + FG+LY++A L
Sbjct: 244 LWALLSLLVAYALCLWQL-RKFPPDPDEATVQLFMLFGYLYILATLL 289
>gnl|CDD|131289 TIGR02235, menA_cyano-plnt, 1,4-dihydroxy-2-naphthoate
phytyltransferase. This family of phytyltransferases,
found in plants and cyanobacteria, are involved in the
biosythesis of phylloquinone (Vitamin K1). Phylloquinone
is a critical component of photosystem I. The closely
related MenA enzyme from bacteria transfers a prenyl
group (which only differs in the saturation of the
isoprenyl groups) in the biosynthesis of menaquinone.
Activity towards both substrates in certain organisms
should be considered a possibility [Biosynthesis of
cofactors, prosthetic groups, and carriers, Menaquinone
and ubiquinone].
Length = 285
Score = 57.8 bits (140), Expect = 1e-09
Identities = 58/256 (22%), Positives = 104/256 (40%), Gaps = 20/256 (7%)
Query: 22 YLLALRPWSLSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHCAGNVVNTYY 81
+L A++P S +++P L+G A+A G F + L+ I + N+ N +
Sbjct: 2 WLAAIKPPLYSVAVMPILVGTAVAWGQ---GGVFHLDRFALFLIAAILILAWINLTNDVF 58
Query: 82 DYVLGIDTSRRSDDRTLVDHILSESELVSLGVMLYLVSSAGFILLSYISPAKMEHLAAVF 141
D GID R ++V+ S S + L G + ++ +S V
Sbjct: 59 DSDTGID---RFKLHSIVNLTGSRSLVFWLA---NFFLLIGLVGIAALS---WRWQITVL 109
Query: 142 FCGLSSSFL---YSGC-LGLKYTALGDVLILMIFGPITVLFAFMSQTGRWEWATICYALP 197
FL Y G L Y LG+ + + FGP+ + A +Q+ + ++
Sbjct: 110 ALVGLCCFLGYLYQGPPFRLGYQGLGEPICWLCFGPLAIAAALYAQSQSFSLIPWKASIL 169
Query: 198 VALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVYYAFLLFIPYIVFVVWGMNHS 257
V L T IL ++ +E D G + + LG + +++ + Y+V ++ +
Sbjct: 170 VGLATTLILFCSHFHQVEDDLAHGKRSPVVRLGTKLAAKIVPWVISLSYVVLLIAVIGG- 228
Query: 258 YYYLLPLVTLKSAFSI 273
LP TL + SI
Sbjct: 229 ---FLPWTTLLALASI 241
>gnl|CDD|237373 PRK13387, PRK13387, 1,4-dihydroxy-2-naphthoate
octaprenyltransferase; Provisional.
Length = 317
Score = 53.3 bits (128), Expect = 5e-08
Identities = 66/317 (20%), Positives = 129/317 (40%), Gaps = 34/317 (10%)
Query: 19 LSSYLLALRPWSLSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHCAGNVVN 78
+L + + AS P +LG ++ + F W++ ++ +++ A +N
Sbjct: 3 AKLFLKLVEIHTKIASFFPVILGTLFSLYV---AKIFDWLLFLAFMVAMLAFDIATTAIN 59
Query: 79 TYYDYVLGIDTS-RRSDDRTLVDHILSESELVSLGVMLYLVSSAGFILLSYISPAKMEHL 137
Y D+ +DT+ + H L ++++ +++Y+V++ + L + + +
Sbjct: 60 NYMDFKKALDTADYVGIGNGIGQHGLKPRNVLTVILLMYVVAAILGVYLCMNTSWLLLVI 119
Query: 138 AAVFFCGLSSSFLYS-GCLGLKYTALGDVL--ILMIFG--------------PITVLF-- 178
+ F LY+ G L L LG++ + M FG ++LF
Sbjct: 120 GLICFA---IGILYTGGPLPLSRMPLGEIFSGLTMGFGIFLLAVYINTNTITIESLLFQG 176
Query: 179 -AFMSQTGRWE-WATICYALPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHV 236
F Q A +LP+ I+ +NN RDL+ D + T+ +G+ V
Sbjct: 177 EMFTIQGNLIAIIAIGVISLPIIFTIANIMLANNLRDLDEDIKNHRYTLVYYIGREKGVV 236
Query: 237 YYAFLLFIPY--IVFVVWGMNHSYYYLLPLVTL----KSAFSIEKQFRCPDKIHLVPKLT 290
+A L + Y I +V S + LL +TL + S +K+ + P + + T
Sbjct: 237 LFAILFYASYLAIAVIVLMGYISPWALLSFLTLRKPISNLQSFQKEAKDPKYFVIAIRNT 296
Query: 291 AKLNLYFGFLYVVAVTL 307
N FGFL ++ +
Sbjct: 297 VLTNTTFGFLLSASLLI 313
>gnl|CDD|236015 PRK07419, PRK07419, 1,4-dihydroxy-2-naphthoate
octaprenyltransferase; Provisional.
Length = 304
Score = 48.4 bits (116), Expect = 1e-06
Identities = 54/216 (25%), Positives = 92/216 (42%), Gaps = 22/216 (10%)
Query: 13 TMLQEKLSSYLLALRPWSLSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHC 72
+M + +L A++P S +++P L+G A A+ E G F LL I +
Sbjct: 6 SMSPSRRKLWLAAIKPPMYSVAIMPILVGTAWALG---ETGVFRLDQFITFLLAAILILA 62
Query: 73 AGNVVNTYYDYVLGIDTS------RRSDDRTLVDHILSESELVSLGVMLYLVSSAGFILL 126
N+ N +D GID + + +++LV + + L+ L +L + + + +L
Sbjct: 63 WENLSNDVFDADTGIDKNKFHSVVNLTGNKSLVFWLANLFLLLGLLGILAIALQSDWTVL 122
Query: 127 SYISPAKMEHLAAVFFCGLSSSFLYSG-CLGLKYTALGDVLILMIFGPITVLFAFMSQTG 185
+ C L +LY G L Y LG+ L + FGP+ V A SQT
Sbjct: 123 GLVLLC----------CFL--GYLYQGPPFRLGYQGLGEPLCFLAFGPLAVAAALYSQTP 170
Query: 186 RWEWATICYALPVALNTEAILHSNNTRDLESDRQVG 221
W + ++ + L T IL ++ +E D G
Sbjct: 171 SWSLIPLAASIILGLATSLILFCSHFHQVEDDLAAG 206
>gnl|CDD|223459 COG0382, UbiA, 4-hydroxybenzoate polyprenyltransferase and related
prenyltransferases [Coenzyme metabolism].
Length = 289
Score = 48.1 bits (115), Expect = 2e-06
Identities = 59/257 (22%), Positives = 100/257 (38%), Gaps = 19/257 (7%)
Query: 12 FTMLQEKLSSYLLALRPWSLSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVH 71
+ L L RP L+P LLG LA G S +L + L
Sbjct: 6 LPNKLKALLKLLRLDRPIFNLLLLLPALLGLLLAAS-----GLPSLKLLLLAFLAFFLAR 60
Query: 72 CAGNVVNTYYDYVLGID-TSRRSDDRTLVDHILSESELVSLGVMLYLVSSAGFILLSYIS 130
AG V+N D ID + R+ +R L +S E + L ++L L+ A +LL+ ++
Sbjct: 61 SAGYVINDLADR--EIDRINPRTKNRPLPSGRVSVKEALLLAILLLLLGLALALLLNPLA 118
Query: 131 PAKMEHLAAVFFCGLSSSFLYSGCLGLKYTALGDVLILMIFGPITVLFAFMSQTGRWEWA 190
+ L + Y ++T L +++ + FG + L + G
Sbjct: 119 -------FLLSLAALVLALAYP--FLKRFTFLPQLVLGLAFG-LGALAGAAAVGGSLPLL 168
Query: 191 TICYALPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVYYAFLLFIPYIVFV 250
L L T +D+E DR+ G+ ++ +L G + A LL + + V
Sbjct: 169 AWLLLLAAILWTLGYDIIYAIQDIEGDRKAGLKSLPVLFGI-KKALALALLLLLASALLV 227
Query: 251 VWGMNHSYYYLLPLVTL 267
+ G+ L+ L+ L
Sbjct: 228 LLGLLAGLLGLIYLLGL 244
>gnl|CDD|237241 PRK12872, ubiA, prenyltransferase; Reviewed.
Length = 285
Score = 32.2 bits (74), Expect = 0.29
Identities = 55/269 (20%), Positives = 102/269 (37%), Gaps = 18/269 (6%)
Query: 20 SSYLLALRPWSLSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHCAGNVVNT 79
L A +L+ LG +L + I ++ LL + A ++N
Sbjct: 1 RKLLFAFLKLFRYGNLLIAALGQSLVYMASL---LLGLPISWLLLLITFLIAAAVYIINY 57
Query: 80 YYDYVLGIDTSRRSDDRTLVDHILSESELVSLGVMLYLVSSAGFILLSYISPAKMEHLAA 139
D L D + + R + + + L L G LL+ I K A
Sbjct: 58 LTD--LEEDIINKPE-RVVFSETKAYGLFLLL---NVLGLYLGAYLLAVIGGPKF---AL 108
Query: 140 VFFCGLSSSFLYSGCL--GLKYTAL-GDVLILMIFGPITVLFAFMSQTGRWEWATICYAL 196
+F L LYS LK L ++++ +++ ++ + YA+
Sbjct: 109 IFIIPLILGILYSVFFKRRLKRIPLFKNLVVSLLWALSPLILGVYYYQLTIFSLLLLYAV 168
Query: 197 PVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQ--SYSHVYYAFLLFIPYIVFVVW-G 253
+ L + + +D+E DR+ G+ T+ I+LG+ + + LLF+ ++ V+ G
Sbjct: 169 FIFLKSFIREIVFDIKDIEGDRKSGLKTLPIVLGKERTLKFLLILNLLFLILLILGVYTG 228
Query: 254 MNHSYYYLLPLVTLKSAFSIEKQFRCPDK 282
+ +L L+ + I K F DK
Sbjct: 229 LLPLLLLVLLLLLAYVLYYIIKLFAADDK 257
>gnl|CDD|183812 PRK12884, ubiA, prenyltransferase; Reviewed.
Length = 279
Score = 31.5 bits (72), Expect = 0.50
Identities = 59/222 (26%), Positives = 90/222 (40%), Gaps = 32/222 (14%)
Query: 65 LTVISVHCAGNVVNTYYDYVLGIDTSRRSDDRTLVDHILSESELVSLGVMLYLVSSAGFI 124
LT + N +N Y+DY +D R D R + +S E + L L+ G I
Sbjct: 44 LTAFFASGSANALNDYFDY--EVDRINRPD-RPIPSGRISRREALLLA---ILLFILGLI 97
Query: 125 LLSYISPAKMEHLAAVFFCGLSSSFLYSGCLGLKYTALGDVLILMIFGPITVLFAFMSQT 184
ISP V + LY+ L +Y +G++ + + G +T +F ++
Sbjct: 98 AAYLISP---LAFLVVILVSVLG-ILYNWKLK-EYGLIGNLYVAFLTG-MTFIFGGIA-V 150
Query: 185 GRWEWATICYALPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVYYAFLLFI 244
G A I A L T + D+E DR G T+AIL G+ + A LFI
Sbjct: 151 GELNEAVILLAAMAFLMTLGREIMKDIEDVEGDRLRGARTLAILYGEKIA-GRIAAALFI 209
Query: 245 --------PYIVFVVWGMNHSYYYLLP-----LVTLKSAFSI 273
PY+ + + YL P L+ L SA+S+
Sbjct: 210 LAVLLSPLPYLFGIF-----NILYLAPVLVADLIFLYSAYSL 246
>gnl|CDD|237229 PRK12848, ubiA, 4-hydroxybenzoate octaprenyltransferase; Reviewed.
Length = 282
Score = 31.3 bits (72), Expect = 0.59
Identities = 57/207 (27%), Positives = 94/207 (45%), Gaps = 36/207 (17%)
Query: 35 LIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHCAGNVVNTYYDYVLGIDTS-RRS 93
L PTL LA G +L V +L V + AG V+N Y D D +R+
Sbjct: 24 LWPTLWALWLA-----ADGIPDLWVLVVFVLGVFLMRAAGCVINDYADR--DFDGHVKRT 76
Query: 94 DDRTLVDHILSESELVSLGVMLYLVSSAGFILLSYISP-AKMEHLAAVFFCGLSSSFLYS 152
+R L +SE E ++L V+L LV+ F+L+ ++ +AA+ +++Y
Sbjct: 77 KNRPLASGAVSEKEALALFVVLVLVA---FLLVLTLNTLTIWLSVAALAL-----AWIYP 128
Query: 153 GCLGLKYTALGDVLILMIFGPITVLFAFMSQTGR------WEW-ATICYALPVALNTE-A 204
+YT L V++ FG + AF + G + A I + VA +T+ A
Sbjct: 129 FM--KRYTHLPQVVLGAAFG-WGIPMAFAAVQGSVPLEAWLLFLANILWT--VAYDTQYA 183
Query: 205 ILHSNNTRDLESDRQVGIVTVAILLGQ 231
++ D + D ++GI + AIL G+
Sbjct: 184 MV------DRDDDLKIGIKSTAILFGR 204
>gnl|CDD|237240 PRK12870, ubiA, 4-hydroxybenzoate polyprenyltransferase; Reviewed.
Length = 290
Score = 30.3 bits (69), Expect = 0.99
Identities = 44/206 (21%), Positives = 84/206 (40%), Gaps = 34/206 (16%)
Query: 35 LIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHCAGNVVNTYYDYVLGIDTS-RRS 93
+IP L LA G ++ + +L ++ AG VVN +D ID R+
Sbjct: 28 MIPALWAVFLAAH-----GLPPLPLVGIIILGALATSAAGCVVNDLWDR--DIDPQVERT 80
Query: 94 DDRTLVDHILSESELVSLGVMLYLVSSA-GFILLSYISPAKMEHLAAVFFCGLSSSFLYS 152
R L LS V +G+++ +V+ L +++P + + FLY
Sbjct: 81 RFRPLASRRLS----VKVGIVIAIVALLCAAGLAFFLNPLSF----WLCVAAVPVIFLYP 132
Query: 153 GCLGLKYTALGDVLILMIFGPITVLFAFMSQTGRWEW-------ATICYALPVALNTEAI 205
+ + +++ + +G VL ++ + TG + AT+ + L +T
Sbjct: 133 LAK--RVFPVPQLVLAIAWG-FAVLISWSAVTGHLDLGTWLLWAATVFWTL--GFDTVYA 187
Query: 206 LHSNNTRDLESDRQVGIVTVAILLGQ 231
+ D E D ++G+ + AI G+
Sbjct: 188 M-----SDREDDLRIGVNSSAIFFGR 208
>gnl|CDD|220402 pfam09787, Golgin_A5, Golgin subfamily A member 5. Members of this
family of proteins are involved in maintaining Golgi
structure. They stimulate the formation of Golgi stacks
and ribbons, and are involved in intra-Golgi retrograde
transport. Two main interactions have been
characterized: one with RAB1A that has been activated by
GTP-binding and another with isoform CASP of CUTL1.
Length = 509
Score = 30.6 bits (69), Expect = 1.1
Identities = 12/35 (34%), Positives = 16/35 (45%)
Query: 258 YYYLLPLVTLKSAFSIEKQFRCPDKIHLVPKLTAK 292
Y+Y L S +I FR +K L LTA+
Sbjct: 345 YHYREDLGNQSSPLNIRLTFRESEKQKLRTALTAR 379
>gnl|CDD|215499 PLN02922, PLN02922, prenyltransferase.
Length = 315
Score = 30.1 bits (68), Expect = 1.2
Identities = 55/211 (26%), Positives = 81/211 (38%), Gaps = 39/211 (18%)
Query: 32 SASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHCAGNVVNTYYDYVLGIDTSR 91
S +L+P +G A A ++ G F LL+ + V N+ N YD G+D ++
Sbjct: 28 SVALVPLTVGAAAAY---LQTGLFDARRYGTLLLSSVLVITWLNLSNDAYDADTGVDKNK 84
Query: 92 RSDDRTLVD-----HILSESELVSLGVMLYLVSSAG-----FILLSYISPAKMEHLAAVF 141
+ LV + L LG + +S ILL LAA
Sbjct: 85 KESVVNLVGSRRGVLAAAIGCLA-LGAAGLVWASLVAGNIRVILL----------LAAAI 133
Query: 142 FCGLSSSFLYSGC-LGLKYTALGDVLILMIFGPI-TVLFAFM--SQTGRWEWA------- 190
CG ++Y L Y LG+ L FGP+ T F S G E A
Sbjct: 134 LCG----YVYQCPPFRLSYKGLGEPLCFAAFGPLATTAFYLALASGAGGSEMAILPLTPT 189
Query: 191 TICYALPVALNTEAILHSNNTRDLESDRQVG 221
+ ++ V L T IL ++ ++ DR VG
Sbjct: 190 VLSASVLVGLTTTLILFCSHFHQIDGDRAVG 220
>gnl|CDD|233428 TIGR01473, cyoE_ctaB, protoheme IX farnesyltransferase. This model
describes protoheme IX farnesyltransferase, also called
heme O synthase, an enzyme that creates an intermediate
in the biosynthesis of heme A. Prior to the description
of its enzymatic function, this protein was often called
a cytochrome o ubiquinol oxidase assembly factor
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Heme, porphyrin, and cobalamin].
Length = 280
Score = 29.5 bits (67), Expect = 1.8
Identities = 34/118 (28%), Positives = 52/118 (44%), Gaps = 16/118 (13%)
Query: 35 LIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHCAGNVVNTYYDYVLGIDTS-RRS 93
LI G LA + +L +TLL + N N Y D ID +R+
Sbjct: 16 LITAFAGMWLAPG----GALVNPPLLLLTLLGTTLAAASANAFNMYID--RDIDKKMKRT 69
Query: 94 DDRTLVDHILSESELVSLGVMLYLVSSAGFILLSYISPAKMEHLAAVFFCGLSSSFLY 151
+R LV +S E ++ G++L ++ A IL ++++P LAA GL F Y
Sbjct: 70 RNRPLVTGRISPREALAFGLLLGVLGVA--ILAAFVNP-----LAA--LLGLFGIFFY 118
>gnl|CDD|218438 pfam05108, DUF690, Protein of unknown function (DUF690). This
family contains several uncharacterized bacterial
membrane proteins.
Length = 481
Score = 29.7 bits (67), Expect = 1.8
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 92 RSDDRTLVDHILSESELVSLGVMLYLVSSAGFILLSYISP 131
R D R D + +S V+LGV+L +V+ G LL+ I P
Sbjct: 27 RRDTRMFDDPLRFQSRSVALGVVLAIVALIGAALLALIKP 66
>gnl|CDD|106187 PRK13225, PRK13225, phosphoglycolate phosphatase; Provisional.
Length = 273
Score = 29.3 bits (65), Expect = 2.6
Identities = 11/22 (50%), Positives = 17/22 (77%)
Query: 209 NNTRDLESDRQVGIVTVAILLG 230
+ TRD+E+ RQVG++ VA+ G
Sbjct: 220 DETRDVEAARQVGLIAVAVTWG 241
>gnl|CDD|217277 pfam02901, PFL, Pyruvate formate lyase.
Length = 646
Score = 29.1 bits (66), Expect = 3.2
Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Query: 209 NNTRDLESDRQVGIVTVAILLGQSYSHVYYAFLLFIPYIV-FVVWGMNHSYY 259
N RD + +QVG T + S+ V AF + Y+ V +N +Y
Sbjct: 457 NGGRDELTGKQVGPKTGPLTEFLSFEEVMEAFKKQLDYLADLYVNALNIIHY 508
>gnl|CDD|223187 COG0109, CyoE, Polyprenyltransferase (cytochrome oxidase assembly
factor) [Posttranslational modification, protein
turnover, chaperones].
Length = 304
Score = 28.7 bits (65), Expect = 3.3
Identities = 40/138 (28%), Positives = 58/138 (42%), Gaps = 17/138 (12%)
Query: 15 LQEKLSSYLLALRPWSLSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHCAG 74
+ + YL +P +S LI G LA + G + ++L +TLL
Sbjct: 14 SRSTIKDYLQLTKPRVISLLLITAFAGMLLAPR-----GSINPLLLLLTLLGGALGAGGA 68
Query: 75 NVVNTYYDYVLGIDTS-RRSDDRTLVDHILSESELVSLGVMLYLVSSAGFILLSYISPAK 133
N Y D ID R+ R LV ++S E ++ G++L AGF LL ++
Sbjct: 69 GAFNMYID--RDIDALMERTRKRPLVTGLISPREALAFGLVL---GVAGFSLLWFLVNL- 122
Query: 134 MEHLAAVFFCGLSSSFLY 151
LAAV GL F Y
Sbjct: 123 ---LAAVL--GLFGIFFY 135
>gnl|CDD|234396 TIGR03919, T7SS_EccB, type VII secretion protein EccB,
Actinobacterial. This model represents the
transmembrane protein EccB of the actinobacterial flavor
of type VII secretion systems. Species such as
Mycobacterium tuberculosis have several instances of
this system per genome, designated EccB1, EccB2, etc.
This model does not identify functionally related
proteins in the Firmicutes such as Staphylococcus aureus
and Bacillus anthracis [Protein fate, Protein and
peptide secretion and trafficking].
Length = 456
Score = 28.8 bits (65), Expect = 4.1
Identities = 13/41 (31%), Positives = 23/41 (56%)
Query: 92 RSDDRTLVDHILSESELVSLGVMLYLVSSAGFILLSYISPA 132
R D R L D + +S ++ GV+L +++ AG +L+ P
Sbjct: 22 RRDVRMLDDPLRRQSRALAAGVVLAVLALAGCAVLALFRPG 62
>gnl|CDD|237243 PRK12875, ubiA, prenyltransferase; Reviewed.
Length = 282
Score = 27.7 bits (62), Expect = 7.1
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 213 DLESDRQVGIVTVAILLGQSYSHVYYAFLLFIPYIVFV 250
D+E DR GI T A +LG+ ++ Y A + F
Sbjct: 189 DIEPDRAAGIRTTATVLGERRTYAYCAACWLLAAAAFA 226
>gnl|CDD|187747 cd09289, Photosystem-II_D1, D1 subunit of photosystem II (PS II).
Photosystem II (PS II), D2 subunit. PS II is a
multi-subunit protein found in the photosynthetic
membranes of plants, algae, and cyanobacteria. It
utilizes light-induced electron transfer and
water-splitting reactions to produce protons, electrons,
and molecular oxygen. The protons generated are
instrumental in ATP formation. Molecular dioxygen is
released as a by-product. PS II can be described as
containing two parts: the photochemical part and the
catalytic part. The photochemical portion promotes the
fast, efficient light-induced charge separation and
stabilization that occur when light is absorbed by
chlorophyll. The catalytic portion, where water is
oxidized, involves a cluster of Mn ions close to a
redox-active tyrosine residue. The Mn cluster and its
ligands form a functional unit called the
oxygen-evolving complex (OEC) or the water-oxidizing
complex (WOC). The D1 and D2 subunits are a pair of
interwined polypeptides. They contain all the cofactors
involved directly in water oxidation and plastoquinone
reduction. The D1 subunit contains the Mn cluster that
constitutes the site of water oxidation. D1 and D2 are
highly homologous and are also similar to the L and M
proteins in bacterial photosynthetic reaction centers.
Length = 338
Score = 27.5 bits (61), Expect = 9.2
Identities = 16/43 (37%), Positives = 21/43 (48%)
Query: 14 MLQEKLSSYLLALRPWSLSASLIPTLLGCALAVKLPIEKGQFS 56
M +E SY L +RPW A P A+ + PI +G FS
Sbjct: 121 MGREWELSYRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFS 163
>gnl|CDD|130221 TIGR01151, psbA, photosystem II, DI subunit (also called Q(B)).
This model describes the Photosystem II, DI subunit
(also called Q(B)) in bacterial and its equivalents in
chloroplast of algae and higher plants. Photosystem II
is many ways functionally equivalent to bacterial
reaction center. At the core of Photosystem II are
several light harvesting cofactors including
plastoquinones, pheophytins, phyloquinones etc. These
cofactors are intimately associated with the
polypeptides, which principally including subunits DI,
DII, Cyt.b, Cyt.f and iron-sulphur protein. Together
they participate in the electron transfer reactions that
lead to the net production of the reducting equivalents
in the form of NADPH, which are used for reduction of
CO2 to carbohydrates(C6H1206). Phosystem II operates
during oxygenic photosynthesis and principal electron
donor is H2O. Although no structural data is presently
available, a huge body of literature exits that
describes function using a variety of biochemical and
biophysical techniques [Energy metabolism, Electron
transport, Energy metabolism, Photosynthesis].
Length = 360
Score = 27.6 bits (61), Expect = 10.0
Identities = 14/36 (38%), Positives = 18/36 (50%)
Query: 21 SYLLALRPWSLSASLIPTLLGCALAVKLPIEKGQFS 56
SY L +RPW A P A+ + PI +G FS
Sbjct: 134 SYRLGMRPWICVAYSAPVAAATAVFLIYPIGQGSFS 169
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.327 0.140 0.430
Gapped
Lambda K H
0.267 0.0721 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 15,608,573
Number of extensions: 1514519
Number of successful extensions: 2246
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2205
Number of HSP's successfully gapped: 123
Length of query: 308
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 211
Effective length of database: 6,635,264
Effective search space: 1400040704
Effective search space used: 1400040704
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 59 (26.5 bits)