RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14930
(308 letters)
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 38.0 bits (87), Expect = 0.001
Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 14/39 (35%)
Query: 16 QE--KLSSYLLALRPWSL-SASLIPTLLGCALAVKLPIE 51
Q KL + +L+ ++ SA P ALA+K +E
Sbjct: 20 QALKKLQA---SLKLYADDSA---P-----ALAIKATME 47
Score = 32.2 bits (72), Expect = 0.10
Identities = 9/23 (39%), Positives = 10/23 (43%), Gaps = 8/23 (34%)
Query: 274 EKQFRCPDKIHLVPKLTAKLNLY 296
EKQ + KL A L LY
Sbjct: 18 EKQ--------ALKKLQASLKLY 32
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.0 bits (80), Expect = 0.034
Identities = 45/264 (17%), Positives = 78/264 (29%), Gaps = 68/264 (25%)
Query: 24 LALRPWSLSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHCAGNVVNTYYDY 83
+ RP +LS G LL + + + ++
Sbjct: 4 YSTRPLTLS-------------------HGSLE-----HVLLVPTASFFIASQLQEQFNK 39
Query: 84 VLGIDTSRRSDDRTLVDHILSESELVSLGVMLYLVSSAGFILLSYISPAKMEHLAAV--- 140
+L T + D D + +ELV +L G++ S + P+K+ V
Sbjct: 40 ILPEPTEGFAAD----DEPTTPAELVG----KFL----GYV-SSLVEPSKVGQFDQVLNL 86
Query: 141 FFCGLSSSFLYSG---CLGLKYTALGDVLILMIFGPITVLFAFMSQTGRWEWATICYALP 197
+ +L L K D ++ I R P
Sbjct: 87 CLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKR----------P 136
Query: 198 VALNTEAILHSNNTRDLES--DRQVGIVTVAILLGQSYSHVYYAFL--LFIPYIVFVVWG 253
+ + L + + + VAI GQ + Y+ L L+ Y V V
Sbjct: 137 FDKKSNSAL-------FRAVGEGNAQL--VAIFGGQGNTDDYFEELRDLYQTYHVLVGDL 187
Query: 254 MNHSYYYLLPLVTLKSAFSIEKQF 277
+ S L L+ ++ EK F
Sbjct: 188 IKFSAETLSELI--RTTLDAEKVF 209
Score = 33.9 bits (77), Expect = 0.070
Identities = 55/338 (16%), Positives = 101/338 (29%), Gaps = 108/338 (31%)
Query: 7 NKNIWFTMLQEKLSSYLLALRPW-SLSASLIPTLLGCALAVKLPIEKG------------ 53
N + +F L++ +Y + + SA + L+ L + +G
Sbjct: 165 NTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSN 224
Query: 54 ----------QFSWIILFVTLLTVISVHCAGNVVNTYYDYVLGIDTSRRSDDRTLVDHIL 103
S ++ V L V +LG L ++
Sbjct: 225 TPDKDYLLSIPISCPLIGVIQLAHYVVTA----------KLLGFTPG------ELRSYLK 268
Query: 104 SESELVSLGVMLYLVSSAGFILLS------YISPAKMEHLAAVFFCGLSSSFLYSGCLGL 157
+ G LV++ I + ++S K + +FF G+ Y L
Sbjct: 269 G-----ATGHSQGLVTAV-AIAETDSWESFFVSVRKA--ITVLFFIGVRCYEAY-PNTSL 319
Query: 158 KYTALGDVL---------ILMIFG-PITVLFAFMSQTGRWEWATICYALP------VAL- 200
+ L D L +L I + ++++T LP ++L
Sbjct: 320 PPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKT--------NSHLPAGKQVEISLV 371
Query: 201 NT--EAILHSNNTRDLES-DRQVGIVTVAILLGQS---YS----HVYYAFL-LFIPYIVF 249
N ++ S + L + + L QS +S FL + P+
Sbjct: 372 NGAKNLVV-SGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPF--- 427
Query: 250 VVWGMNHSYYYLLPLVTL------KSAFSIE-KQFRCP 280
HS + L+P L K+ S K + P
Sbjct: 428 ------HS-HLLVPASDLINKDLVKNNVSFNAKDIQIP 458
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial;
membrane protein, mitochondrial transport; HET: ACP LMT
CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Length = 595
Score = 29.1 bits (66), Expect = 2.4
Identities = 11/43 (25%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 89 TSRRSDDRTLVDHILSESELVSLGVMLYLVSSAGFILLSYISP 131
+R S D L+ ++E+ +S G+ +S G ++ ++SP
Sbjct: 122 INRLSSDTALLGRSVTEN--LSDGLRAGAQASVGISMMFFVSP 162
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 28.3 bits (62), Expect = 4.2
Identities = 28/145 (19%), Positives = 51/145 (35%), Gaps = 48/145 (33%)
Query: 10 IWFTMLQE-------KLSSYLLALRPWSLSASLIPTLLGCALAVKLPIEKGQFSWIILFV 62
IWF +++ KL Y L + S IP++ L +K+ +E
Sbjct: 395 IWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIY---LELKVKLENEY-------- 443
Query: 63 TLLTVISVHCAGNVVNTY-----YDYVLGIDTSRRSDDRTLVDHI------LSESELVSL 111
++H ++V+ Y +D D D+ HI + E ++L
Sbjct: 444 ------ALH--RSIVDHYNIPKTFDSD---DLIPPYLDQYFYSHIGHHLKNIEHPERMTL 492
Query: 112 GVMLYLVSSAGFILLSYISPAKMEH 136
M++L F+ K+ H
Sbjct: 493 FRMVFL--DFRFL------EQKIRH 509
>3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown
function, glycosidase, hydrolase, manganese,
metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis}
Length = 450
Score = 27.4 bits (60), Expect = 6.5
Identities = 11/69 (15%), Positives = 22/69 (31%), Gaps = 9/69 (13%)
Query: 192 ICYALPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVYYAFLLFIPY----I 247
I Y P+++ T + + + +G + + + L I
Sbjct: 143 INYTNPMSVCTRVLY-----KVFPGIKAIGCCHEVFGTQKLLAEMVTERLGIEVPRREDI 197
Query: 248 VFVVWGMNH 256
V G+NH
Sbjct: 198 RVNVLGINH 206
>1up7_A 6-phospho-beta-glucosidase; hydrolase, family4 hydrolase, Na
dependent; HET: G6P NAD; 2.4A {Thermotoga maritima}
SCOP: c.2.1.5 d.162.1.2 PDB: 1up6_A* 1up4_A
Length = 417
Score = 27.0 bits (59), Expect = 8.7
Identities = 12/116 (10%), Positives = 31/116 (26%), Gaps = 11/116 (9%)
Query: 192 ICYALPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVY----YAFLLFIPYI 247
+ + P TE + LE ++ +G+ V I + + ++ L +
Sbjct: 138 VNFTNPSGHITEFVR-----NYLEYEKFIGLCNVPINFIREIAEMFSARLEDVFLKYYGL 192
Query: 248 VFVVWGMNHSYY--YLLPLVTLKSAFSIEKQFRCPDKIHLVPKLTAKLNLYFGFLY 301
+ + + V + + +N Y +
Sbjct: 193 NHLSFIEKVFVKGEDVTEKVFENLKLKLSNIPDEDFPTWFYDSVRLIVNPYLRYYL 248
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.327 0.140 0.430
Gapped
Lambda K H
0.267 0.0420 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,551,737
Number of extensions: 259181
Number of successful extensions: 557
Number of sequences better than 10.0: 1
Number of HSP's gapped: 555
Number of HSP's successfully gapped: 12
Length of query: 308
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 215
Effective length of database: 4,105,140
Effective search space: 882605100
Effective search space used: 882605100
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 57 (26.5 bits)