BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14931
(106 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3IU1|A Chain A, Crystal Structure Of Human Type-I N-Myristoyltransferase
With Bound Myristoyl-Coa
pdb|3IU1|B Chain B, Crystal Structure Of Human Type-I N-Myristoyltransferase
With Bound Myristoyl-Coa
pdb|3IU2|A Chain A, Crystal Structure Of Human Type-I N-Myristoyltransferase
With Bound Myristoyl-Coa And Inhibitor Ddd90096
pdb|3IU2|B Chain B, Crystal Structure Of Human Type-I N-Myristoyltransferase
With Bound Myristoyl-Coa And Inhibitor Ddd90096
pdb|3IWE|A Chain A, Crystal Structure Of Human Type-I N-Myristoyltransferase
With Bound Myristoyl-Coa And Inhibitor Ddd85646
pdb|3IWE|B Chain B, Crystal Structure Of Human Type-I N-Myristoyltransferase
With Bound Myristoyl-Coa And Inhibitor Ddd85646
pdb|3JTK|A Chain A, Crystal Structure Of Human Type-I N-Myristoyltransferase
With Bound Myristoyl-Coa And Inhibitor Ddd90055
pdb|3JTK|B Chain B, Crystal Structure Of Human Type-I N-Myristoyltransferase
With Bound Myristoyl-Coa And Inhibitor Ddd90055
Length = 383
Score = 162 bits (411), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 77/104 (74%), Positives = 87/104 (83%)
Query: 3 SVTDMVSYYTLPSTVMNHEVHKSIKAAYSFYNVSFKTKWVDLMQDALITAKNEGFDVFNA 62
VTD +S+YTLPST+MNH HKS+KAAYSFYNV +T +DLM DAL+ AK +GFDVFNA
Sbjct: 280 EVTDFLSFYTLPSTIMNHPTHKSLKAAYSFYNVHTQTPLLDLMSDALVLAKMKGFDVFNA 339
Query: 63 LDLMENKEFLGPLKFGIGDGNLQYYLYNWKCPSIPPNKIGLVLQ 106
LDLMENK FL LKFGIGDGNLQYYLYNWKCPS+ K+GLVLQ
Sbjct: 340 LDLMENKTFLEKLKFGIGDGNLQYYLYNWKCPSMGAEKVGLVLQ 383
>pdb|1RXT|A Chain A, Crystal Structure Of Human Myristoyl-Coa:protein N-
Myristoyltransferase.
pdb|1RXT|B Chain B, Crystal Structure Of Human Myristoyl-Coa:protein N-
Myristoyltransferase.
pdb|1RXT|C Chain C, Crystal Structure Of Human Myristoyl-Coa:protein N-
Myristoyltransferase.
pdb|1RXT|D Chain D, Crystal Structure Of Human Myristoyl-Coa:protein N-
Myristoyltransferase
Length = 496
Score = 162 bits (409), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 76/104 (73%), Positives = 87/104 (83%)
Query: 3 SVTDMVSYYTLPSTVMNHEVHKSIKAAYSFYNVSFKTKWVDLMQDALITAKNEGFDVFNA 62
VTD +S+YTLPST+MNH HKS+KAAYSFYNV +T +DLM DAL+ AK +GFDVFNA
Sbjct: 393 EVTDFLSFYTLPSTIMNHPTHKSLKAAYSFYNVHTQTPLLDLMSDALVLAKMKGFDVFNA 452
Query: 63 LDLMENKEFLGPLKFGIGDGNLQYYLYNWKCPSIPPNKIGLVLQ 106
LDLMENK FL LKFGIGDGNLQYYLYNWKCPS+ K+G+VLQ
Sbjct: 453 LDLMENKTFLEKLKFGIGDGNLQYYLYNWKCPSMGAEKVGIVLQ 496
>pdb|4B10|A Chain A, Plasmodium Vivax N-Myristoyltransferase With A Non-
Hydrolysable Co-Factor
pdb|4B10|B Chain B, Plasmodium Vivax N-Myristoyltransferase With A Non-
Hydrolysable Co-Factor
pdb|4B10|C Chain C, Plasmodium Vivax N-Myristoyltransferase With A Non-
Hydrolysable Co-Factor
pdb|4B11|A Chain A, Plasmodium Vivax N-Myristoyltransferase With A Bound
Benzofuran Inhibitor (Compound 13)
pdb|4B11|B Chain B, Plasmodium Vivax N-Myristoyltransferase With A Bound
Benzofuran Inhibitor (Compound 13)
pdb|4B11|C Chain C, Plasmodium Vivax N-Myristoyltransferase With A Bound
Benzofuran Inhibitor (Compound 13)
pdb|4B12|A Chain A, Plasmodium Vivax N-Myristoyltransferase With A Bound
Benzofuran Inhibitor (Compound 23)
pdb|4B12|B Chain B, Plasmodium Vivax N-Myristoyltransferase With A Bound
Benzofuran Inhibitor (Compound 23)
pdb|4B12|C Chain C, Plasmodium Vivax N-Myristoyltransferase With A Bound
Benzofuran Inhibitor (Compound 23)
pdb|4B13|A Chain A, Plasmodium Vivax N-Myristoyltransferase With A Bound
Benzofuran Inhibitor (Compound 25)
pdb|4B13|B Chain B, Plasmodium Vivax N-Myristoyltransferase With A Bound
Benzofuran Inhibitor (Compound 25)
pdb|4B13|C Chain C, Plasmodium Vivax N-Myristoyltransferase With A Bound
Benzofuran Inhibitor (Compound 25)
pdb|4B14|A Chain A, Plasmodium Vivax N-Myristoyltransferase With A Bound
Benzofuran Inhibitor (Compound 26)
pdb|4B14|B Chain B, Plasmodium Vivax N-Myristoyltransferase With A Bound
Benzofuran Inhibitor (Compound 26)
pdb|4B14|C Chain C, Plasmodium Vivax N-Myristoyltransferase With A Bound
Benzofuran Inhibitor (Compound 26)
Length = 385
Score = 120 bits (302), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 53/102 (51%), Positives = 75/102 (73%)
Query: 4 VTDMVSYYTLPSTVMNHEVHKSIKAAYSFYNVSFKTKWVDLMQDALITAKNEGFDVFNAL 63
+ DM+S+Y+LPS ++ ++ + ++ AAYSFYNV+ + LMQDA++ AK FDVFNAL
Sbjct: 283 IKDMISFYSLPSQILGNDKYSTLNAAYSFYNVTTTATFKQLMQDAILLAKRNNFDVFNAL 342
Query: 64 DLMENKEFLGPLKFGIGDGNLQYYLYNWKCPSIPPNKIGLVL 105
++M+NK LKFG GDG+L+YYLYNWKC S P +G+VL
Sbjct: 343 EVMQNKSVFEDLKFGEGDGSLKYYLYNWKCASFAPAHVGIVL 384
>pdb|4A95|A Chain A, Plasmodium Vivax N-Myristoyltransferase With Quinoline
Inhibitor
pdb|4A95|B Chain B, Plasmodium Vivax N-Myristoyltransferase With Quinoline
Inhibitor
pdb|4A95|C Chain C, Plasmodium Vivax N-Myristoyltransferase With Quinoline
Inhibitor
pdb|4BBH|A Chain A, Plasmodium Vivax N-myristoyltransferase With A Bound
Benzothiophene Inhibitor
pdb|4BBH|B Chain B, Plasmodium Vivax N-myristoyltransferase With A Bound
Benzothiophene Inhibitor
pdb|4BBH|C Chain C, Plasmodium Vivax N-myristoyltransferase With A Bound
Benzothiophene Inhibitor
Length = 384
Score = 120 bits (302), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 53/102 (51%), Positives = 75/102 (73%)
Query: 4 VTDMVSYYTLPSTVMNHEVHKSIKAAYSFYNVSFKTKWVDLMQDALITAKNEGFDVFNAL 63
+ DM+S+Y+LPS ++ ++ + ++ AAYSFYNV+ + LMQDA++ AK FDVFNAL
Sbjct: 282 IKDMISFYSLPSQILGNDKYSTLNAAYSFYNVTTTATFKQLMQDAILLAKRNNFDVFNAL 341
Query: 64 DLMENKEFLGPLKFGIGDGNLQYYLYNWKCPSIPPNKIGLVL 105
++M+NK LKFG GDG+L+YYLYNWKC S P +G+VL
Sbjct: 342 EVMQNKSVFEDLKFGEGDGSLKYYLYNWKCASFAPAHVGIVL 383
>pdb|2WSA|A Chain A, Crystal Structure Of Leishmania Major N-
Myristoyltransferase (Nmt) With Bound Myristoyl-Coa And
A Pyrazole Sulphonamide Ligand (Ddd85646)
Length = 438
Score = 93.2 bits (230), Expect = 3e-20, Method: Composition-based stats.
Identities = 43/102 (42%), Positives = 65/102 (63%)
Query: 4 VTDMVSYYTLPSTVMNHEVHKSIKAAYSFYNVSFKTKWVDLMQDALITAKNEGFDVFNAL 63
VTD S+Y +PSTV+ + + + AAY Y + L+ D LI A + GFDV N +
Sbjct: 336 VTDFFSFYRIPSTVIGNSNYNLLNAAYVHYYAATSIPLHQLILDLLIVAHSRGFDVCNMV 395
Query: 64 DLMENKEFLGPLKFGIGDGNLQYYLYNWKCPSIPPNKIGLVL 105
++++N+ F+ LKFG GDG+L+YY YNW P I P+++ LV+
Sbjct: 396 EILDNRSFVEQLKFGAGDGHLRYYFYNWAYPKIKPSQVALVM 437
>pdb|3H5Z|A Chain A, Crystal Structure Of Leishmania Major
N-Myristoyltransferase With Bound Myristoyl-Coa
pdb|4A2Z|A Chain A, Crystal Structure Of Leishmania Major
N-Myristoyltransferase (Nmt) With Bound Myristoyl-Coa
And A Pyrazole Sulphonamide Ligand
pdb|4A30|A Chain A, Crystal Structure Of Leishmania Major
N-Myristoyltransferase (Nmt) With Bound Myristoyl-Coa
And A Pyrazole Sulphonamide Ligand
pdb|4A31|A Chain A, Crystal Structure Of Leishmania Major
N-Myristoyltransferase (Nmt) With Bound Myristoyl-Coa
And A Pyrazole Sulphonamide Ligand
pdb|4A32|A Chain A, Crystal Structure Of Leishmania Major
N-Myristoyltransferase (Nmt) With Bound Myristoyl-Coa
And A Pyrazole Sulphonamide Ligand
pdb|4A33|A Chain A, Crystal Structure Of Leishmania Major
N-Myristoyltransferase (Nmt) With Bound Myristoyl-Coa
And A Pyrazole Sulphonamide Ligand
Length = 438
Score = 93.2 bits (230), Expect = 3e-20, Method: Composition-based stats.
Identities = 43/102 (42%), Positives = 65/102 (63%)
Query: 4 VTDMVSYYTLPSTVMNHEVHKSIKAAYSFYNVSFKTKWVDLMQDALITAKNEGFDVFNAL 63
VTD S+Y +PSTV+ + + + AAY Y + L+ D LI A + GFDV N +
Sbjct: 336 VTDFFSFYRIPSTVIGNSNYNLLNAAYVHYYAATSIPLHQLILDLLIVAHSRGFDVCNMV 395
Query: 64 DLMENKEFLGPLKFGIGDGNLQYYLYNWKCPSIPPNKIGLVL 105
++++N+ F+ LKFG GDG+L+YY YNW P I P+++ LV+
Sbjct: 396 EILDNRSFVEQLKFGAGDGHLRYYFYNWAYPKIKPSQVALVM 437
>pdb|2WUU|A Chain A, Structure Of N-Myristoyltransferase From L. Donovani
Length = 421
Score = 93.2 bits (230), Expect = 3e-20, Method: Composition-based stats.
Identities = 43/102 (42%), Positives = 65/102 (63%)
Query: 4 VTDMVSYYTLPSTVMNHEVHKSIKAAYSFYNVSFKTKWVDLMQDALITAKNEGFDVFNAL 63
VTD S+Y +PSTV+ + + + AAY Y + L+ D LI A + GFDV N +
Sbjct: 319 VTDFFSFYRIPSTVIGNSNYNILNAAYVHYYAATSMPLHQLILDLLIVAHSRGFDVCNMV 378
Query: 64 DLMENKEFLGPLKFGIGDGNLQYYLYNWKCPSIPPNKIGLVL 105
++++N+ F+ LKFG GDG+L+YY YNW P I P+++ LV+
Sbjct: 379 EILDNRSFVEQLKFGAGDGHLRYYFYNWAYPKIKPSQVALVM 420
>pdb|1NMT|A Chain A, N-Myristoyl Transferase From Candida Albicans At 2.45 A
pdb|1NMT|B Chain B, N-Myristoyl Transferase From Candida Albicans At 2.45 A
pdb|1NMT|C Chain C, N-Myristoyl Transferase From Candida Albicans At 2.45 A
pdb|1IYK|A Chain A, Crystal Structure Of Candida Albicans
N-Myristoyltransferase With Myristoyl-Coa And Peptidic
Inhibitor
pdb|1IYK|B Chain B, Crystal Structure Of Candida Albicans
N-Myristoyltransferase With Myristoyl-Coa And Peptidic
Inhibitor
pdb|1IYL|A Chain A, Crystal Structure Of Candida Albicans
N-myristoyltransferase With Non- Peptidic Inhibitor
pdb|1IYL|B Chain B, Crystal Structure Of Candida Albicans
N-myristoyltransferase With Non- Peptidic Inhibitor
pdb|1IYL|C Chain C, Crystal Structure Of Candida Albicans
N-myristoyltransferase With Non- Peptidic Inhibitor
pdb|1IYL|D Chain D, Crystal Structure Of Candida Albicans
N-myristoyltransferase With Non- Peptidic Inhibitor
Length = 392
Score = 78.2 bits (191), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 43/96 (44%), Positives = 57/96 (59%), Gaps = 7/96 (7%)
Query: 4 VTDMVSYYTLPSTVMNHEVHKSIKAAYSFYNVS-------FKTKWVDLMQDALITAKNEG 56
+TD SYY LP TV+++ H + AY FY S +K + +L+ DALIT+K G
Sbjct: 269 ITDYFSYYLLPFTVLDNAQHDELGIAYLFYYASDSFEKPNYKKRLNELITDALITSKKFG 328
Query: 57 FDVFNALDLMENKEFLGPLKFGIGDGNLQYYLYNWK 92
DVFN L +N FL KFG GDG L YYL+N++
Sbjct: 329 VDVFNCLTCQDNTYFLKDCKFGSGDGFLNYYLFNYR 364
>pdb|2NMT|A Chain A, Myristoyl-Coa:protein N-Myristoyltransferase Bound To
Myristoyl-Coa And Peptide Analogs
pdb|1IIC|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoylcoa
pdb|1IIC|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoylcoa
pdb|1IID|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae N-
Myristoyltransferase With Bound S-(2-Oxo)pentadecylcoa
And The Octapeptide Glyaskla
Length = 422
Score = 73.6 bits (179), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 59/111 (53%), Gaps = 17/111 (15%)
Query: 3 SVTDMVSYYTLPSTVMNHEVHKSIKAAYSFY-----------------NVSFKTKWVDLM 45
+TD S+Y+LP T++N+ +K + Y +Y + KT+ +L+
Sbjct: 289 KITDFFSFYSLPFTILNNTKYKDLGIGYLYYYATDADFQFKDRFDPKATKALKTRLCELI 348
Query: 46 QDALITAKNEGFDVFNALDLMENKEFLGPLKFGIGDGNLQYYLYNWKCPSI 96
DA I AKN DVFNAL +N FL LKFG GDG L +YL+N++ I
Sbjct: 349 YDACILAKNANMDVFNALTSQDNTLFLDDLKFGPGDGFLNFYLFNYRAKPI 399
>pdb|2P6E|A Chain A, Crystal Structures Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoyl-Coa
pdb|2P6E|B Chain B, Crystal Structures Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoyl-Coa
pdb|2P6E|C Chain C, Crystal Structures Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoyl-Coa
pdb|2P6E|D Chain D, Crystal Structures Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoyl-Coa
pdb|2P6E|E Chain E, Crystal Structures Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoyl-Coa
pdb|2P6E|F Chain F, Crystal Structures Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoyl-Coa
pdb|2P6F|A Chain A, Crystal Structures Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoyl-Coa And
Inhibitors
pdb|2P6F|B Chain B, Crystal Structures Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoyl-Coa And
Inhibitors
pdb|2P6F|C Chain C, Crystal Structures Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoyl-Coa And
Inhibitors
pdb|2P6F|D Chain D, Crystal Structures Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoyl-Coa And
Inhibitors
pdb|2P6F|E Chain E, Crystal Structures Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoyl-Coa And
Inhibitors
pdb|2P6F|F Chain F, Crystal Structures Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoyl-Coa And
Inhibitors
pdb|2P6G|A Chain A, Crystal Structures Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoyl-Coa And
Inhibitors
pdb|2P6G|B Chain B, Crystal Structures Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoyl-Coa And
Inhibitors
pdb|2P6G|C Chain C, Crystal Structures Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoyl-Coa And
Inhibitors
pdb|2P6G|D Chain D, Crystal Structures Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoyl-Coa And
Inhibitors
pdb|2P6G|E Chain E, Crystal Structures Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoyl-Coa And
Inhibitors
pdb|2P6G|F Chain F, Crystal Structures Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoyl-Coa And
Inhibitors
Length = 455
Score = 73.6 bits (179), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 59/111 (53%), Gaps = 17/111 (15%)
Query: 3 SVTDMVSYYTLPSTVMNHEVHKSIKAAYSFY-----------------NVSFKTKWVDLM 45
+TD S+Y+LP T++N+ +K + Y +Y + KT+ +L+
Sbjct: 322 KITDFFSFYSLPFTILNNTKYKDLGIGYLYYYATDADFQFKDRFDPKATKALKTRLCELI 381
Query: 46 QDALITAKNEGFDVFNALDLMENKEFLGPLKFGIGDGNLQYYLYNWKCPSI 96
DA I AKN DVFNAL +N FL LKFG GDG L +YL+N++ I
Sbjct: 382 YDACILAKNANMDVFNALTSQDNTLFLDDLKFGPGDGFLNFYLFNYRAKPI 432
>pdb|2P88|A Chain A, Crystal Structure Of N-succinyl Arg/lys Racemase From
Bacillus Cereus Atcc 14579
pdb|2P88|B Chain B, Crystal Structure Of N-succinyl Arg/lys Racemase From
Bacillus Cereus Atcc 14579
pdb|2P88|C Chain C, Crystal Structure Of N-succinyl Arg/lys Racemase From
Bacillus Cereus Atcc 14579
pdb|2P88|D Chain D, Crystal Structure Of N-succinyl Arg/lys Racemase From
Bacillus Cereus Atcc 14579
pdb|2P88|E Chain E, Crystal Structure Of N-succinyl Arg/lys Racemase From
Bacillus Cereus Atcc 14579
pdb|2P88|F Chain F, Crystal Structure Of N-succinyl Arg/lys Racemase From
Bacillus Cereus Atcc 14579
pdb|2P88|G Chain G, Crystal Structure Of N-succinyl Arg/lys Racemase From
Bacillus Cereus Atcc 14579
pdb|2P88|H Chain H, Crystal Structure Of N-succinyl Arg/lys Racemase From
Bacillus Cereus Atcc 14579
pdb|2P8B|A Chain A, Crystal Structure Of N-Succinyl ArgLYS RACEMASE FROM
Bacillus Cereus Atcc 14579 Complexed With N-Succinyl
Lys.
pdb|2P8C|A Chain A, Crystal Structure Of N-Succinyl ArgLYS RACEMASE FROM
Bacillus Cereus Atcc 14579 Complexed With N-Succinyl Arg
Length = 369
Score = 27.7 bits (60), Expect = 1.6, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 52 AKNEGFDVFNALDLMENKEFLGPLKFGIGDGNLQY 86
A + GF V + ++ + E GPLKF GNL Y
Sbjct: 302 ASSAGFHVAFSKKIITSVELTGPLKFTKDIGNLHY 336
>pdb|4HNV|A Chain A, Crystal Structure Of R54e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNV|B Chain B, Crystal Structure Of R54e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNV|C Chain C, Crystal Structure Of R54e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNV|D Chain D, Crystal Structure Of R54e Mutant Of S. Aureus Pyruvate
Carboxylase
Length = 1173
Score = 27.3 bits (59), Expect = 2.5, Method: Composition-based stats.
Identities = 13/44 (29%), Positives = 21/44 (47%)
Query: 5 TDMVSYYTLPSTVMNHEVHKSIKAAYSFYNVSFKTKWVDLMQDA 48
++ V Y P V++ V +S KA + + WVD M+ A
Sbjct: 639 SNAVGYKNYPDNVIHKFVQESAKAGIDVFRIFDSLNWVDQMKVA 682
>pdb|4HNU|A Chain A, Crystal Structure Of K442e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNU|B Chain B, Crystal Structure Of K442e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNU|C Chain C, Crystal Structure Of K442e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNU|D Chain D, Crystal Structure Of K442e Mutant Of S. Aureus Pyruvate
Carboxylase
Length = 1173
Score = 27.3 bits (59), Expect = 2.5, Method: Composition-based stats.
Identities = 13/44 (29%), Positives = 21/44 (47%)
Query: 5 TDMVSYYTLPSTVMNHEVHKSIKAAYSFYNVSFKTKWVDLMQDA 48
++ V Y P V++ V +S KA + + WVD M+ A
Sbjct: 639 SNAVGYKNYPDNVIHKFVQESAKAGIDVFRIFDSLNWVDQMKVA 682
>pdb|4HNT|A Chain A, Crystal Structure Of F403a Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNT|B Chain B, Crystal Structure Of F403a Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNT|C Chain C, Crystal Structure Of F403a Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNT|D Chain D, Crystal Structure Of F403a Mutant Of S. Aureus Pyruvate
Carboxylase
Length = 1173
Score = 27.3 bits (59), Expect = 2.5, Method: Composition-based stats.
Identities = 13/44 (29%), Positives = 21/44 (47%)
Query: 5 TDMVSYYTLPSTVMNHEVHKSIKAAYSFYNVSFKTKWVDLMQDA 48
++ V Y P V++ V +S KA + + WVD M+ A
Sbjct: 639 SNAVGYKNYPDNVIHKFVQESAKAGIDVFRIFDSLNWVDQMKVA 682
>pdb|3BG5|A Chain A, Crystal Structure Of Staphylococcus Aureus Pyruvate
Carboxylase
pdb|3BG5|B Chain B, Crystal Structure Of Staphylococcus Aureus Pyruvate
Carboxylase
pdb|3BG5|C Chain C, Crystal Structure Of Staphylococcus Aureus Pyruvate
Carboxylase
pdb|3BG5|D Chain D, Crystal Structure Of Staphylococcus Aureus Pyruvate
Carboxylase
Length = 1173
Score = 27.3 bits (59), Expect = 2.5, Method: Composition-based stats.
Identities = 13/44 (29%), Positives = 21/44 (47%)
Query: 5 TDMVSYYTLPSTVMNHEVHKSIKAAYSFYNVSFKTKWVDLMQDA 48
++ V Y P V++ V +S KA + + WVD M+ A
Sbjct: 639 SNAVGYKNYPDNVIHKFVQESAKAGIDVFRIFDSLNWVDQMKVA 682
>pdb|3HBL|A Chain A, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a
Mutant
pdb|3HBL|B Chain B, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a
Mutant
pdb|3HBL|C Chain C, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a
Mutant
pdb|3HBL|D Chain D, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a
Mutant
Length = 1150
Score = 27.3 bits (59), Expect = 2.5, Method: Composition-based stats.
Identities = 13/44 (29%), Positives = 21/44 (47%)
Query: 5 TDMVSYYTLPSTVMNHEVHKSIKAAYSFYNVSFKTKWVDLMQDA 48
++ V Y P V++ V +S KA + + WVD M+ A
Sbjct: 616 SNAVGYKNYPDNVIHKFVQESAKAGIDVFRIFDSLNWVDQMKVA 659
>pdb|3HB9|A Chain A, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t
Mutant
pdb|3HB9|B Chain B, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t
Mutant
pdb|3HB9|C Chain C, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t
Mutant
pdb|3HB9|D Chain D, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t
Mutant
Length = 1150
Score = 26.9 bits (58), Expect = 2.5, Method: Composition-based stats.
Identities = 13/44 (29%), Positives = 21/44 (47%)
Query: 5 TDMVSYYTLPSTVMNHEVHKSIKAAYSFYNVSFKTKWVDLMQDA 48
++ V Y P V++ V +S KA + + WVD M+ A
Sbjct: 616 SNAVGYKNYPDNVIHKFVQESAKAGIDVFRIFDSLNWVDQMKVA 659
>pdb|3HO8|A Chain A, Crystal Structure Of S. Aureus Pyruvate Carboxylase In
Complex With Coenzyme A
pdb|3HO8|D Chain D, Crystal Structure Of S. Aureus Pyruvate Carboxylase In
Complex With Coenzyme A
pdb|3HO8|C Chain C, Crystal Structure Of S. Aureus Pyruvate Carboxylase In
Complex With Coenzyme A
pdb|3HO8|B Chain B, Crystal Structure Of S. Aureus Pyruvate Carboxylase In
Complex With Coenzyme A
Length = 1150
Score = 26.9 bits (58), Expect = 2.5, Method: Composition-based stats.
Identities = 13/44 (29%), Positives = 21/44 (47%)
Query: 5 TDMVSYYTLPSTVMNHEVHKSIKAAYSFYNVSFKTKWVDLMQDA 48
++ V Y P V++ V +S KA + + WVD M+ A
Sbjct: 616 SNAVGYKNYPDNVIHKFVQESAKAGIDVFRIFDSLNWVDQMKVA 659
>pdb|4AKB|A Chain A, Structure Of Galactose Binding Lectin From Champedak
(cgb) With Galactose
pdb|4AKB|C Chain C, Structure Of Galactose Binding Lectin From Champedak
(cgb) With Galactose
pdb|4AKB|E Chain E, Structure Of Galactose Binding Lectin From Champedak
(cgb) With Galactose
pdb|4AKB|G Chain G, Structure Of Galactose Binding Lectin From Champedak
(cgb) With Galactose
pdb|4AKC|A Chain A, Structure Of Galactose Binding Lectin From Champedak
(cgb) With Gal(beta)1,3-galnac
pdb|4AKC|C Chain C, Structure Of Galactose Binding Lectin From Champedak
(cgb) With Gal(beta)1,3-galnac
pdb|4AKC|E Chain E, Structure Of Galactose Binding Lectin From Champedak
(cgb) With Gal(beta)1,3-galnac
pdb|4AKC|G Chain G, Structure Of Galactose Binding Lectin From Champedak
(cgb) With Gal(beta)1,3-galnac
Length = 133
Score = 26.9 bits (58), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 31/73 (42%)
Query: 2 TSVTDMVSYYTLPSTVMNHEVHKSIKAAYSFYNVSFKTKWVDLMQDALITAKNEGFDVFN 61
T++ D Y L + E HKS ++ +S +M+ + T K G+ V
Sbjct: 23 TAIGDFQVVYDLNGSPYVGENHKSFITGFTPVKISLDFPSEYIMEVSGYTGKVSGYVVVR 82
Query: 62 ALDLMENKEFLGP 74
+L NK+ GP
Sbjct: 83 SLTFKTNKKTYGP 95
>pdb|4AK4|A Chain A, High Resolution Structure Of Galactose Binding Lectin
From Champedak (cgb)
pdb|4AK4|C Chain C, High Resolution Structure Of Galactose Binding Lectin
From Champedak (cgb)
pdb|4AK4|E Chain E, High Resolution Structure Of Galactose Binding Lectin
From Champedak (cgb)
pdb|4AK4|G Chain G, High Resolution Structure Of Galactose Binding Lectin
From Champedak (cgb)
pdb|4AK4|I Chain I, High Resolution Structure Of Galactose Binding Lectin
From Champedak (cgb)
pdb|4AK4|K Chain K, High Resolution Structure Of Galactose Binding Lectin
From Champedak (cgb)
pdb|4AK4|M Chain M, High Resolution Structure Of Galactose Binding Lectin
From Champedak (cgb)
pdb|4AK4|O Chain O, High Resolution Structure Of Galactose Binding Lectin
From Champedak (cgb)
Length = 133
Score = 26.9 bits (58), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 31/73 (42%)
Query: 2 TSVTDMVSYYTLPSTVMNHEVHKSIKAAYSFYNVSFKTKWVDLMQDALITAKNEGFDVFN 61
T++ D Y L + E HKS ++ +S +M+ + T K G+ V
Sbjct: 23 TAIGDFQVVYDLNGSPYVGENHKSFITGFTPVKISLDFPSEYIMEVSGYTGKVSGYVVVR 82
Query: 62 ALDLMENKEFLGP 74
+L NK+ GP
Sbjct: 83 SLTFKTNKKTYGP 95
>pdb|3TMG|A Chain A, Crystal Structure Of Glycine Betaine, L-Proline Abc
Transporter, GlycineBETAINEL-Proline-Binding Protein
(Prox) From Borrelia Burgdorferi
pdb|3TMG|B Chain B, Crystal Structure Of Glycine Betaine, L-Proline Abc
Transporter, GlycineBETAINEL-Proline-Binding Protein
(Prox) From Borrelia Burgdorferi
pdb|3TMG|C Chain C, Crystal Structure Of Glycine Betaine, L-Proline Abc
Transporter, GlycineBETAINEL-Proline-Binding Protein
(Prox) From Borrelia Burgdorferi
pdb|3TMG|D Chain D, Crystal Structure Of Glycine Betaine, L-Proline Abc
Transporter, GlycineBETAINEL-Proline-Binding Protein
(Prox) From Borrelia Burgdorferi
Length = 280
Score = 25.4 bits (54), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 21/42 (50%)
Query: 3 SVTDMVSYYTLPSTVMNHEVHKSIKAAYSFYNVSFKTKWVDL 44
SVT + Y L S ++ V + A FY KTK+VDL
Sbjct: 50 SVTTSIMYQYLASGKIDGTVSSWVPTADKFYYEKLKTKFVDL 91
>pdb|1JOT|A Chain A, Structure Of The Lectin Mpa Complexed With T-Antigen
Disaccharide
pdb|3LLY|A Chain A, Crystal Structure Analysis Of Maclura Pomifera Agglutinin
pdb|3LLZ|A Chain A, Crystal Structure Analysis Of Maclura Pomifera Agglutinin
Complex With Gal-Beta-1,3-Galnac
pdb|3LM1|A Chain A, Crystal Structure Analysis Of Maclura Pomifera Agglutinin
Complex With P-Nitrophenyl-Galnac
pdb|3LM1|C Chain C, Crystal Structure Analysis Of Maclura Pomifera Agglutinin
Complex With P-Nitrophenyl-Galnac
pdb|3LM1|E Chain E, Crystal Structure Analysis Of Maclura Pomifera Agglutinin
Complex With P-Nitrophenyl-Galnac
pdb|3LM1|G Chain G, Crystal Structure Analysis Of Maclura Pomifera Agglutinin
Complex With P-Nitrophenyl-Galnac
pdb|3LM1|I Chain I, Crystal Structure Analysis Of Maclura Pomifera Agglutinin
Complex With P-Nitrophenyl-Galnac
pdb|3LM1|K Chain K, Crystal Structure Analysis Of Maclura Pomifera Agglutinin
Complex With P-Nitrophenyl-Galnac
pdb|3LM1|M Chain M, Crystal Structure Analysis Of Maclura Pomifera Agglutinin
Complex With P-Nitrophenyl-Galnac
pdb|3LM1|O Chain O, Crystal Structure Analysis Of Maclura Pomifera Agglutinin
Complex With P-Nitrophenyl-Galnac
Length = 133
Score = 25.4 bits (54), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 35/82 (42%), Gaps = 2/82 (2%)
Query: 2 TSVTDMVSYYTLPSTVMNHEVHKSIKAAYSFYNVSFKTKWVDLMQDALITAKNEGFDVFN 61
T++ + Y L E HKS + +S + +++ + K EG+ V
Sbjct: 23 TAIGGLRVTYDLNGMPFVAEDHKSFITGFKPVKISLEFPSEYIVEVSGYVGKVEGYTVIR 82
Query: 62 ALDLMENKEFLGPLKFGIGDGN 83
+L NK+ GP +G+ +G
Sbjct: 83 SLTFKTNKQTYGP--YGVTNGT 102
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,241,920
Number of Sequences: 62578
Number of extensions: 118177
Number of successful extensions: 304
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 278
Number of HSP's gapped (non-prelim): 24
length of query: 106
length of database: 14,973,337
effective HSP length: 71
effective length of query: 35
effective length of database: 10,530,299
effective search space: 368560465
effective search space used: 368560465
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)