Query psy14931
Match_columns 106
No_of_seqs 103 out of 216
Neff 4.6
Searched_HMMs 46136
Date Fri Aug 16 16:08:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14931.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14931hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02799 NMT_C: Myristoyl-CoA: 100.0 7.5E-56 1.6E-60 337.2 9.6 104 2-105 85-190 (190)
2 KOG2779|consensus 100.0 1.8E-51 3.8E-56 338.0 8.5 105 2-106 317-421 (421)
3 COG5092 NMT1 N-myristoyl trans 100.0 9.4E-42 2E-46 279.4 7.8 105 2-106 320-451 (451)
4 COG3439 Uncharacterized conser 65.9 25 0.00054 25.7 5.8 56 34-95 14-69 (137)
5 PF00583 Acetyltransf_1: Acety 65.8 6.6 0.00014 23.6 2.4 37 41-77 43-82 (83)
6 PLN02706 glucosamine 6-phospha 61.9 13 0.00029 25.1 3.5 39 41-79 103-141 (150)
7 PRK10975 TDP-fucosamine acetyl 53.8 27 0.00058 25.1 4.2 47 41-89 144-193 (194)
8 PF15092 UPF0728: Uncharacteri 51.3 5.5 0.00012 27.6 0.2 34 50-84 32-77 (88)
9 COG5014 Predicted Fe-S oxidore 48.8 14 0.00031 29.2 2.2 40 23-62 50-97 (228)
10 COG3040 Blc Bacterial lipocali 47.9 28 0.00061 26.8 3.6 34 30-63 134-167 (174)
11 KOG3139|consensus 36.4 78 0.0017 24.2 4.4 48 41-88 102-152 (165)
12 KOG0870|consensus 30.2 3.7 8E-05 31.5 -3.6 21 56-76 68-88 (172)
13 PF08212 Lipocalin_2: Lipocali 26.6 91 0.002 21.7 3.2 29 31-59 107-135 (143)
14 CHL00012 ndhJ NADH dehydrogena 26.2 2.2E+02 0.0047 21.4 5.3 38 47-92 38-75 (158)
15 cd02169 Citrate_lyase_ligase C 25.9 77 0.0017 25.6 3.1 52 41-94 43-97 (297)
16 PF03659 Glyco_hydro_71: Glyco 25.4 60 0.0013 27.2 2.4 33 32-66 5-39 (386)
17 PRK09539 tRNA-splicing endonuc 25.4 2.7E+02 0.0058 20.2 7.5 64 5-92 55-120 (124)
18 PF09999 DUF2240: Uncharacteri 22.6 45 0.00097 24.7 1.0 13 47-59 125-137 (144)
19 PRK03624 putative acetyltransf 21.9 1.6E+02 0.0034 18.7 3.5 39 41-79 86-127 (140)
20 cd01780 PLC_epsilon_RA Ubiquit 21.8 1E+02 0.0022 21.5 2.6 24 40-63 24-47 (93)
21 PF13527 Acetyltransf_9: Acety 21.7 2.3E+02 0.005 18.2 6.4 54 23-78 67-125 (127)
22 TIGR00124 cit_ly_ligase [citra 21.6 92 0.002 25.6 2.8 41 40-80 67-107 (332)
23 COG3612 Uncharacterized protei 21.6 55 0.0012 24.8 1.4 14 47-60 130-143 (157)
24 TIGR02382 wecD_rffC TDP-D-fuco 21.3 1.9E+02 0.0041 20.7 4.1 40 41-80 141-183 (191)
25 PRK07757 acetyltransferase; Pr 20.2 1.4E+02 0.0031 20.0 3.1 37 41-79 83-119 (152)
26 PRK10146 aminoalkylphosphonic 20.2 1.7E+02 0.0037 19.1 3.5 40 41-80 94-136 (144)
27 PRK10140 putative acetyltransf 20.0 1.8E+02 0.0038 19.4 3.5 47 41-88 96-147 (162)
No 1
>PF02799 NMT_C: Myristoyl-CoA:protein N-myristoyltransferase, C-terminal domain; InterPro: IPR022677 Myristoyl-CoA:protein N-myristoyltransferase (2.3.1.97 from EC) (Nmt) [] is the enzyme responsible for transferring a myristate group on the N-terminal glycine of a number of cellular eukaryotics and viral proteins. Nmt is a monomeric protein of about 50 to 60kDa whose sequence appears to be well conserved. The N and C-terminal domains of NMT are structurally similar, each adopting an acyl-CoA N-acyltransferase-like fold. This entry represents the C-terminal region.; GO: 0004379 glycylpeptide N-tetradecanoyltransferase activity; PDB: 2P6G_B 2P6F_F 2P6E_A 1IIC_A 1IID_A 2NMT_A 2WUU_A 1IYL_B 1NMT_B 1IYK_A ....
Probab=100.00 E-value=7.5e-56 Score=337.25 Aligned_cols=104 Identities=64% Similarity=1.099 Sum_probs=93.7
Q ss_pred CccceEEEEeecCeeeeecCccceeeeeeeEEEeecCCCHHHHHHHHHHHHHhcCCcEEEeeccccCccccccCCCcccc
Q psy14931 2 TSVTDMVSYYTLPSTVMNHEVHKSIKAAYSFYNVSFKTKWVDLMQDALITAKNEGFDVFNALDLMENKEFLGPLKFGIGD 81 (106)
Q Consensus 2 ~~itDf~SFY~lpstvl~~~~~~~l~aAY~~Y~~~~~~~l~~L~~daLi~Ak~~gfDVfNaLdim~N~~fL~~lKF~~Gd 81 (106)
|+||||+|||+||||||+|++|++|+|||+|||++|++|++|||+||||+||+.|||||||||+|||++||++|||++||
T Consensus 85 ~~ITDf~SFY~Lpstvi~~~k~~~l~aAY~fY~~~~~~~l~~Lm~DaLi~Ak~~gfDVFNaLd~mdN~~fL~~lKFg~Gd 164 (190)
T PF02799_consen 85 GKITDFFSFYSLPSTVIGNPKHKTLKAAYSFYYVATSTRLKELMNDALILAKNEGFDVFNALDLMDNSSFLEDLKFGPGD 164 (190)
T ss_dssp SEEEEEEEEEEEEEEESSSSSSSEEEEEEEEEEEESSSHHHHHHHHHHHHHHHTTESEEEEESTTTGGGTTTTTT-EEEE
T ss_pred CceeeEEEEeecceeecCCCCccceeeeeeeeeeecCCCHHHHHHHHHHHHHHcCCCEEehhhhccchhhHhhCCccCCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeEEEeecCCCCCCC--CceeEEc
Q psy14931 82 GNLQYYLYNWKCPSIPP--NKIGLVL 105 (106)
Q Consensus 82 G~L~YYLyNw~~~~i~~--~~vglvl 105 (106)
|+|||||||||||+|.+ ++||+||
T Consensus 165 G~L~YYLyNwr~~~i~~~~~~vGlVl 190 (190)
T PF02799_consen 165 GNLNYYLYNWRCPPIMGPISKVGLVL 190 (190)
T ss_dssp EEEEEEEESEB-----GSBGGBE---
T ss_pred CCeEEEEEeccCCCCCCCccccceeC
Confidence 99999999999999875 9999997
No 2
>KOG2779|consensus
Probab=100.00 E-value=1.8e-51 Score=338.02 Aligned_cols=105 Identities=62% Similarity=1.081 Sum_probs=103.9
Q ss_pred CccceEEEEeecCeeeeecCccceeeeeeeEEEeecCCCHHHHHHHHHHHHHhcCCcEEEeeccccCccccccCCCcccc
Q psy14931 2 TSVTDMVSYYTLPSTVMNHEVHKSIKAAYSFYNVSFKTKWVDLMQDALITAKNEGFDVFNALDLMENKEFLGPLKFGIGD 81 (106)
Q Consensus 2 ~~itDf~SFY~lpstvl~~~~~~~l~aAY~~Y~~~~~~~l~~L~~daLi~Ak~~gfDVfNaLdim~N~~fL~~lKF~~Gd 81 (106)
|+||||+|||+||||||+||+|++|+|||+|||+++.+++.|||+||||+||+.|||||||||+|+|++||++||||+||
T Consensus 317 g~ITDF~SFy~lpsTv~~~~~~ktl~aaYlyY~v~~~t~~~~lvnDalilak~~gfDVFNAld~meN~~fl~~LkFg~Gd 396 (421)
T KOG2779|consen 317 GKITDFCSFYSLPSTVMGNPKYKTLQAAYLYYNVATSTPLLQLVNDALILAKQKGFDVFNALDLMENESFLKDLKFGPGD 396 (421)
T ss_pred CcccceeeEEeccccccCCCCcceeeeeeEEEeccCCccHHHHHHHHHHHHHhcCCceeehhhhhhhhhHHHhcCcCcCC
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeEEEeecCCCCCCCCceeEEcC
Q psy14931 82 GNLQYYLYNWKCPSIPPNKIGLVLQ 106 (106)
Q Consensus 82 G~L~YYLyNw~~~~i~~~~vglvl~ 106 (106)
|+|||||||||||.++|++||+|||
T Consensus 397 G~l~YYLYNwr~~~~~ps~vglVL~ 421 (421)
T KOG2779|consen 397 GNLQYYLYNWRCPAMKPSKVGLVLQ 421 (421)
T ss_pred CceeEEEEeccCCcCChhheeEeeC
Confidence 9999999999999999999999997
No 3
>COG5092 NMT1 N-myristoyl transferase [Lipid metabolism]
Probab=100.00 E-value=9.4e-42 Score=279.41 Aligned_cols=105 Identities=46% Similarity=0.812 Sum_probs=101.9
Q ss_pred CccceEEEEeecCeeeeecCccceeeeeeeEEEeecC--------------CCHHHHHHHHHHHHHhcCCcEEEeecccc
Q psy14931 2 TSVTDMVSYYTLPSTVMNHEVHKSIKAAYSFYNVSFK--------------TKWVDLMQDALITAKNEGFDVFNALDLME 67 (106)
Q Consensus 2 ~~itDf~SFY~lpstvl~~~~~~~l~aAY~~Y~~~~~--------------~~l~~L~~daLi~Ak~~gfDVfNaLdim~ 67 (106)
|+||||+|||+||+|+|+|++++.|.+||+|||+++. +++.+++.||+|+||++||||||||++||
T Consensus 320 gkItdFfsFyslp~t~i~n~kykdiq~gYLYYya~d~~~kd~~~~a~~a~~~r~~e~v~Da~ilak~~~~DVFNalt~~d 399 (451)
T COG5092 320 GKITDFFSFYSLPFTTIENKKYKDIQGGYLYYYAGDDQFKDFDPKATKALKTRVAEMVGDAMILAKVEGCDVFNALTMMD 399 (451)
T ss_pred CccccceEEEeccceeecCccccccceeEEEEEccCccccccChHHHHHHHHHHHHHHHHHHHHHHHcCCchhhhhhhcc
Confidence 6899999999999999999999999999999999875 57999999999999999999999999999
Q ss_pred CccccccCCCcccceeeeEEEeecCCCCCC-------------CCceeEEcC
Q psy14931 68 NKEFLGPLKFGIGDGNLQYYLYNWKCPSIP-------------PNKIGLVLQ 106 (106)
Q Consensus 68 N~~fL~~lKF~~GdG~L~YYLyNw~~~~i~-------------~~~vglvl~ 106 (106)
|..||.+||||+|||.|+||||||+|++|+ +|+||+|||
T Consensus 400 N~lFL~dLkFg~GdGflnyYlyNy~~~~Ipggl~~~~s~d~~rrs~vgfVm~ 451 (451)
T COG5092 400 NSLFLADLKFGCGDGFLNYYLYNYKSEEIPGGLNPDNSNDIKRRSKVGFVMP 451 (451)
T ss_pred chhHHHhcCccCCCceeEEEEEeccCCCCCCCCCccccccccccccceEecC
Confidence 999999999999999999999999999999 899999997
No 4
>COG3439 Uncharacterized conserved protein [Function unknown]
Probab=65.89 E-value=25 Score=25.66 Aligned_cols=56 Identities=21% Similarity=0.302 Sum_probs=42.6
Q ss_pred EeecCCCHHHHHHHHHHHHHhcCCcEEEeeccccCccccccCCCcccceeeeEEEeecCCCC
Q psy14931 34 NVSFKTKWVDLMQDALITAKNEGFDVFNALDLMENKEFLGPLKFGIGDGNLQYYLYNWKCPS 95 (106)
Q Consensus 34 ~~~~~~~l~~L~~daLi~Ak~~gfDVfNaLdim~N~~fL~~lKF~~GdG~L~YYLyNw~~~~ 95 (106)
.+..+.+..|-++..-...|+.||.||.-+|.+++-.--..+++-| ||+++--.|+
T Consensus 14 ~~~s~~~~~E~i~~l~~~lk~~G~~V~~~id~~e~l~~~g~~~~~p------~~Il~~cnP~ 69 (137)
T COG3439 14 TAESKLSFDETIERLEEKLKKNGFKVFTEIDHAEALKNAGVLDIPP------YTILVFCNPK 69 (137)
T ss_pred EEEecCCHHHHHHHHHHHHHhCCCeEEEEecHHHHHHhcCcCCCCC------eEEEEEcCCc
Confidence 3455678999999999999999999999999998855333344443 7887776664
No 5
>PF00583 Acetyltransf_1: Acetyltransferase (GNAT) family; InterPro: IPR000182 The N-acetyltransferases (NAT) (EC 2.3.1.-) are enzymes that use acetyl coenzyme A (CoA) to transfer an acetyl group to a substrate, a reaction implicated in various functions from bacterial antibiotic resistance to mammalian circadian rhythm and chromatin remodeling. The Gcn5-related N-acetyltransferases (GNAT) catalyze the transfer of the acetyl from the CoA donor to a primary amine of the acceptor. The GNAT proteins share a domain composed of four conserved sequence motifs A-D [, ]. This GNAT domain is named after yeast GCN5 (from General Control Nonrepressed) and related histone acetyltransferases (HATs) like Hat1 and PCAF. HATs acetylate lysine residues of amino terminal histone tails, resulting in transcription activation. Another category of GNAT, the aminoglycoside N-acetyltransferases, confer antibiotic resistance by catalyzing the acetylation of amino groups in aminoglycoside antibiotics []. GNAT proteins can also have anabolic and catabolic functions in both prokaryotes and eukaryotes [, , , , ]. The acetyltransferase/GNAT domain forms a structurally conserved fold of 6 to 7 beta strands (B) and 4 helices (H) in the topology B1-H1-H2-B2-B3-B4-H3-B5-H4-B6, followed by a C-terminal strand which may be from the same monomer or contributed by another [, ]. Motifs D (B2-B3), A (B4-H3) and B (B5-H4) are collectively called the HAT core [, , ], while the N-terminal motif C (B1-H1) is less conserved. Some proteins known to contain a GNAT domain: Yeast GCN5 and Hat1, which are histone acetyltransferases (EC 2.3.1.48). Human PCAF, a histone acetyltransferase. Mammalian serotonin N-acetyltransferase (SNAT) or arylalkylamine NAT (AANAT), which acetylates serotonin into a circadian neurohormone that may participate in light-dark rhythms, and human mood and behavior. Mammalian glucosamine 6-phosphate N-acetyltransferase (GNA1) (EC 2.3.1.4). Escherichia coli rimI and rimJ, which acetylate the N-terminal alanine of ribosomal proteins S18 and S5, respectively (EC 2.3.1.128). Mycobacterium tuberculosis aminoglycoside 2'-N-acetyltransferase (aac), which acetylates the 2' hydroxyl or amino group of a broad spectrum of aminoglycoside antibiotics. Bacillus subtilis bltD and paiA, which acetylate spermine and spermidine. This entry represents the entire GNAT domain.; GO: 0008080 N-acetyltransferase activity, 0008152 metabolic process; PDB: 3T9Y_A 2R7H_B 2OZH_A 1Y9W_B 1VKC_B 2OH1_C 3R9E_B 3R9G_B 3R9F_A 3R96_A ....
Probab=65.80 E-value=6.6 Score=23.58 Aligned_cols=37 Identities=24% Similarity=0.176 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHhcCCcEEEeeccccCc---cccccCCC
Q psy14931 41 WVDLMQDALITAKNEGFDVFNALDLMENK---EFLGPLKF 77 (106)
Q Consensus 41 l~~L~~daLi~Ak~~gfDVfNaLdim~N~---~fL~~lKF 77 (106)
-+.|++.++..|++.|+...-+.-..+|. .|.+++.|
T Consensus 43 g~~L~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~~~k~Gf 82 (83)
T PF00583_consen 43 GSKLLQAAEEWARKRGIKRIYLDVSPDNPAARRFYEKLGF 82 (83)
T ss_dssp HHHHHHHHHHHHHHTTESEEEEEEETTGHHHHHHHHHTTE
T ss_pred chhhhhhhhhhHHhcCccEEEEEEeCCCHHHHHHHHHcCC
Confidence 36788888889999999999998888887 77777766
No 6
>PLN02706 glucosamine 6-phosphate N-acetyltransferase
Probab=61.94 E-value=13 Score=25.14 Aligned_cols=39 Identities=15% Similarity=0.012 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHhcCCcEEEeeccccCccccccCCCcc
Q psy14931 41 WVDLMQDALITAKNEGFDVFNALDLMENKEFLGPLKFGI 79 (106)
Q Consensus 41 l~~L~~daLi~Ak~~gfDVfNaLdim~N~~fL~~lKF~~ 79 (106)
-++|++.++..|++.|+.-.-+-..-+|..|.+++.|..
T Consensus 103 G~~ll~~~~~~a~~~g~~~i~l~~~~~N~~~y~k~GF~~ 141 (150)
T PLN02706 103 GKKIIEALTEHARSAGCYKVILDCSEENKAFYEKCGYVR 141 (150)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEeccccHHHHHHCcCEE
Confidence 468999999999999999887777778888999999874
No 7
>PRK10975 TDP-fucosamine acetyltransferase; Provisional
Probab=53.80 E-value=27 Score=25.13 Aligned_cols=47 Identities=26% Similarity=0.300 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHhcCCcEEEeeccccCc---cccccCCCcccceeeeEEEe
Q psy14931 41 WVDLMQDALITAKNEGFDVFNALDLMENK---EFLGPLKFGIGDGNLQYYLY 89 (106)
Q Consensus 41 l~~L~~daLi~Ak~~gfDVfNaLdim~N~---~fL~~lKF~~GdG~L~YYLy 89 (106)
-++|++.++..|++.|+....+-..-+|+ .|.+++.|.. .|.. |+||
T Consensus 144 g~~Ll~~~~~~a~~~g~~~i~l~v~~~N~~a~~~yek~Gf~~-~~~~-~~~~ 193 (194)
T PRK10975 144 GARLMQAALNWCQARGLTRLRVATQMGNLAALRLYIRSGANI-ESTA-YWLY 193 (194)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEeCCCcHHHHHHHHHCCCeE-eEEE-eeec
Confidence 46899999999999999988666666785 4789999985 3333 3665
No 8
>PF15092 UPF0728: Uncharacterised protein family UPF0728
Probab=51.29 E-value=5.5 Score=27.57 Aligned_cols=34 Identities=38% Similarity=0.776 Sum_probs=26.3
Q ss_pred HHHHhcCCcE-------EEeeccccCccc-----cccCCCcccceee
Q psy14931 50 ITAKNEGFDV-------FNALDLMENKEF-----LGPLKFGIGDGNL 84 (106)
Q Consensus 50 i~Ak~~gfDV-------fNaLdim~N~~f-----L~~lKF~~GdG~L 84 (106)
-.-++.|.-| +|+++++-|.+- +.+|-|| |||+|
T Consensus 32 a~L~~dGh~v~L~~~~d~n~vel~vnge~VF~CnI~~L~Fg-gDg~l 77 (88)
T PF15092_consen 32 AVLAKDGHEVILEKIEDWNVVELVVNGEIVFQCNITDLEFG-GDGKL 77 (88)
T ss_pred HHHHhCCcEEEEEEeccccEEEEEECCeEEEEeCCceeecC-CCCCc
Confidence 4556677654 789999988664 7889998 99986
No 9
>COG5014 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=48.79 E-value=14 Score=29.20 Aligned_cols=40 Identities=15% Similarity=0.140 Sum_probs=30.4
Q ss_pred cceeeeeeeEEEeec--------CCCHHHHHHHHHHHHHhcCCcEEEe
Q psy14931 23 HKSIKAAYSFYNVSF--------KTKWVDLMQDALITAKNEGFDVFNA 62 (106)
Q Consensus 23 ~~~l~aAY~~Y~~~~--------~~~l~~L~~daLi~Ak~~gfDVfNa 62 (106)
.-.+..||.|=|..+ =++-.+....++.+||+.|||++-.
T Consensus 50 GCnl~CayCw~y~r~~~~~rag~f~~P~eVaeRL~ei~K~~g~d~vRi 97 (228)
T COG5014 50 GCNLLCAYCWNYFRNLRPKRAGDFLSPEEVAERLLEISKKRGCDLVRI 97 (228)
T ss_pred ccceeeHHhhhhhhcCCccccccccCHHHHHHHHHHHHHhcCCcEEEe
Confidence 346777887644433 2577899999999999999999864
No 10
>COG3040 Blc Bacterial lipocalin [Cell envelope biogenesis, outer membrane]
Probab=47.88 E-value=28 Score=26.81 Aligned_cols=34 Identities=26% Similarity=0.304 Sum_probs=24.9
Q ss_pred eeEEEeecCCCHHHHHHHHHHHHHhcCCcEEEee
Q psy14931 30 YSFYNVSFKTKWVDLMQDALITAKNEGFDVFNAL 63 (106)
Q Consensus 30 Y~~Y~~~~~~~l~~L~~daLi~Ak~~gfDVfNaL 63 (106)
|++=...+.+.=.+..+.++..||+.||||-+..
T Consensus 134 ylWlLsRtP~~s~~~~~~ml~~ak~~Gfdv~~li 167 (174)
T COG3040 134 YLWLLSRTPTLSQETLKRMLEIAKRRGFDVSKLI 167 (174)
T ss_pred eEEEEecCCCCCHHHHHHHHHHHHHcCCCcceeE
Confidence 5555455544557888889999999999997543
No 11
>KOG3139|consensus
Probab=36.39 E-value=78 Score=24.18 Aligned_cols=48 Identities=19% Similarity=0.245 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHhcCCcEEEeeccccCccc---cccCCCcccceeeeEEE
Q psy14931 41 WVDLMQDALITAKNEGFDVFNALDLMENKEF---LGPLKFGIGDGNLQYYL 88 (106)
Q Consensus 41 l~~L~~daLi~Ak~~gfDVfNaLdim~N~~f---L~~lKF~~GdG~L~YYL 88 (106)
-+.|+..||..+++.|+|----=+-..|..- -+.|+|...--..+||+
T Consensus 102 g~aLvr~aId~m~~~g~~eVvLeTe~~n~~A~~LY~sLGF~r~~r~~~YYl 152 (165)
T KOG3139|consen 102 GKALVRKAIDAMRSRGYSEVVLETEVTNLSALRLYESLGFKRDKRLFRYYL 152 (165)
T ss_pred HHHHHHHHHHHHHHCCCcEEEEeccccchHHHHHHHhcCceEecceeEEEE
Confidence 4789999999999999997644444455433 57899996655666776
No 12
>KOG0870|consensus
Probab=30.21 E-value=3.7 Score=31.51 Aligned_cols=21 Identities=48% Similarity=0.675 Sum_probs=18.5
Q ss_pred CCcEEEeeccccCccccccCC
Q psy14931 56 GFDVFNALDLMENKEFLGPLK 76 (106)
Q Consensus 56 gfDVfNaLdim~N~~fL~~lK 76 (106)
+=||++||+-|+++.|...||
T Consensus 68 adDVl~aL~Eiefs~f~~plk 88 (172)
T KOG0870|consen 68 ADDVLKALDEIEFSSFVNPLK 88 (172)
T ss_pred HHHHHHHHHHhchHHHhhHHH
Confidence 459999999999999988775
No 13
>PF08212 Lipocalin_2: Lipocalin-like domain; InterPro: IPR000566 Proteins which transport small hydrophobic molecules such as steroids, bilins, retinoids, and lipids share limited regions of sequence homology and a common tertiary structure architecture [, , , , ]. This is an eight stranded antiparallel beta-barrel with a repeated + 1 topology enclosing a internal ligand binding site [, ]. The name 'lipocalin' has been proposed [] for this protein family, but cytosolic fatty-acid binding proteins are also included. The sequences of most members of the family, the core or kernal lipocalins, are characterised by three short conserved stretches of residues, while others, the outlier lipocalin group, share only one or two of these [, ]. Proteins known to belong to this family include alpha-1-microglobulin (protein HC); alpha-1-acid glycoprotein (orosomucoid) []; aphrodisin; apolipoprotein D; beta-lactoglobulin; complement component C8 gamma chain []; crustacyanin []; epididymal-retinoic acid binding protein (E-RABP) []; insectacyanin; odorant-binding protein (OBP); human pregnancy-associated endometrial alpha-2 globulin; probasin (PB), a rat prostatic protein; prostaglandin D synthase (5.3.99.2 from EC) []; purpurin; Von Ebner's gland protein (VEGP) []; and lizard epididymal secretory protein IV (LESP IV) [].; GO: 0005488 binding; PDB: 3EBW_B 1QWD_A 2ACO_A 3MBT_A.
Probab=26.55 E-value=91 Score=21.75 Aligned_cols=29 Identities=21% Similarity=0.199 Sum_probs=18.1
Q ss_pred eEEEeecCCCHHHHHHHHHHHHHhcCCcE
Q psy14931 31 SFYNVSFKTKWVDLMQDALITAKNEGFDV 59 (106)
Q Consensus 31 ~~Y~~~~~~~l~~L~~daLi~Ak~~gfDV 59 (106)
++-...+...=.+.+++++..|++.|||+
T Consensus 107 ~WILsR~p~~~~~~~~~~~~~~~~~G~d~ 135 (143)
T PF08212_consen 107 LWILSRTPQLSEETYAEILDRAKQQGYDV 135 (143)
T ss_dssp EEEEESSSS--HHHHHHHHHHHHHTT--G
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHcCCCH
Confidence 44333444445678889999999999996
No 14
>CHL00012 ndhJ NADH dehydrogenase subunit J
Probab=26.19 E-value=2.2e+02 Score=21.40 Aligned_cols=38 Identities=11% Similarity=0.027 Sum_probs=27.4
Q ss_pred HHHHHHHhcCCcEEEeeccccCccccccCCCcccceeeeEEEeecC
Q psy14931 47 DALITAKNEGFDVFNALDLMENKEFLGPLKFGIGDGNLQYYLYNWK 92 (106)
Q Consensus 47 daLi~Ak~~gfDVfNaLdim~N~~fL~~lKF~~GdG~L~YYLyNw~ 92 (106)
+++...|+.|||.+.++.-.|... . +.=.+.|+|+++.
T Consensus 38 ~v~~~Lk~~gf~~L~~lt~vD~~~---~-----~~fevvYhl~s~~ 75 (158)
T CHL00012 38 SIAVILYVYGYNYLRSQCAYDVAP---G-----GLLASVYHLTRIQ 75 (158)
T ss_pred HHHHHHHHcCCCceeEEEEEEcCC---C-----CeEEEEEEEEecc
Confidence 555667789999999998888521 1 2224789999985
No 15
>cd02169 Citrate_lyase_ligase Citrate lyase ligase. Citrate lyase ligase, also known as [Citrate (pro-3S)-lyase] ligase, is responsible for acetylation of the (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) prosthetic group of the gamma subunit of citrate lyase, converting the inactive thiol form of this enzyme to the active form. The acetylation of 1 molecule of deacetyl-citrate lyase to enzymatically active citrate lyase requires 6 molecules of ATP. The Adenylylyltranferase activity of the enzyme involves the formation of AMP and and pyrophosphate in the acetylation reaction.
Probab=25.89 E-value=77 Score=25.60 Aligned_cols=52 Identities=17% Similarity=0.150 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHhcCCcEEEeeccccCccccccCCCcccc---eeeeEEEeecCCC
Q psy14931 41 WVDLMQDALITAKNEGFDVFNALDLMENKEFLGPLKFGIGD---GNLQYYLYNWKCP 94 (106)
Q Consensus 41 l~~L~~daLi~Ak~~gfDVfNaLdim~N~~fL~~lKF~~Gd---G~L~YYLyNw~~~ 94 (106)
-++||+.++..|++.|+.......--+|..|-+++.|..-. | .+.++.+..|
T Consensus 43 G~~Ll~~l~~~a~~~g~~~i~L~t~~~~~~fYek~GF~~~~~~~~--~~~~~~~gi~ 97 (297)
T cd02169 43 ALKIVSELINKAYEEGIFHLFLFTKPKNAKFFRGLGFKELANASD--EAVLLENGKP 97 (297)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEEcccHHHHHHHCCCEEecccCC--eeeEecCCch
Confidence 46899999999999999976555555677899999998544 3 3445556544
No 16
>PF03659 Glyco_hydro_71: Glycosyl hydrolase family 71 ; InterPro: IPR005197 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,3-glucanases belonging to glycoside hydrolase family 71 (GH71 from CAZY).
Probab=25.41 E-value=60 Score=27.21 Aligned_cols=33 Identities=27% Similarity=0.308 Sum_probs=23.0
Q ss_pred EEEeecCC--CHHHHHHHHHHHHHhcCCcEEEeeccc
Q psy14931 32 FYNVSFKT--KWVDLMQDALITAKNEGFDVFNALDLM 66 (106)
Q Consensus 32 ~Y~~~~~~--~l~~L~~daLi~Ak~~gfDVfNaLdim 66 (106)
.|.++.+. +..+...| +..|++.|+|-| |||++
T Consensus 5 H~mvgn~~~yt~~dw~~d-i~~A~~~GIDgF-aLNig 39 (386)
T PF03659_consen 5 HFMVGNTYNYTQEDWEAD-IRLAQAAGIDGF-ALNIG 39 (386)
T ss_pred EEEeeccCCCCHHHHHHH-HHHHHHcCCCEE-EEecc
Confidence 35555432 44444444 478999999999 99999
No 17
>PRK09539 tRNA-splicing endonuclease subunit beta; Reviewed
Probab=25.41 E-value=2.7e+02 Score=20.21 Aligned_cols=64 Identities=19% Similarity=0.165 Sum_probs=44.0
Q ss_pred ceEEEEeecCeeeeecCccceeeeeeeEEEeec--CCCHHHHHHHHHHHHHhcCCcEEEeeccccCccccccCCCcccce
Q psy14931 5 TDMVSYYTLPSTVMNHEVHKSIKAAYSFYNVSF--KTKWVDLMQDALITAKNEGFDVFNALDLMENKEFLGPLKFGIGDG 82 (106)
Q Consensus 5 tDf~SFY~lpstvl~~~~~~~l~aAY~~Y~~~~--~~~l~~L~~daLi~Ak~~gfDVfNaLdim~N~~fL~~lKF~~GdG 82 (106)
.||.|++..| + + =.+.|+.+-+.+ ..+..+| .++...|+...-...=|+ ...+|
T Consensus 55 ~kfg~~~~~~----~--~---~~s~ylV~Vl~E~~~is~~eL-~~~vr~a~svrK~lVLAV--------------VD~eg 110 (124)
T PRK09539 55 IDEISLIIKD----K--E---NKYTAMVLIVDENEKVSFKKI-LDKLHFSKSMNLELYLAI--------------VDKYG 110 (124)
T ss_pred CceeEEEEec----C--C---CCceEEEEEecCCCccCHHHH-HHHHHHHhhccceeEEEE--------------EcCCC
Confidence 4788887766 1 1 166888887765 5677787 778788876555444332 12478
Q ss_pred eeeEEEeecC
Q psy14931 83 NLQYYLYNWK 92 (106)
Q Consensus 83 ~L~YYLyNw~ 92 (106)
.+-||-..|-
T Consensus 111 dVTYY~v~~i 120 (124)
T PRK09539 111 DVTYYTLSEI 120 (124)
T ss_pred cEEEEEEEEe
Confidence 9999999985
No 18
>PF09999 DUF2240: Uncharacterized protein conserved in archaea (DUF2240); InterPro: IPR018716 This family of various hypothetical archaeal proteins has no known function.
Probab=22.59 E-value=45 Score=24.70 Aligned_cols=13 Identities=54% Similarity=0.756 Sum_probs=10.9
Q ss_pred HHHHHHHhcCCcE
Q psy14931 47 DALITAKNEGFDV 59 (106)
Q Consensus 47 daLi~Ak~~gfDV 59 (106)
-|+++|++.|+||
T Consensus 125 aall~ake~Gvdv 137 (144)
T PF09999_consen 125 AALLYAKEKGVDV 137 (144)
T ss_pred HHHHHHHHhCCCH
Confidence 4678899999997
No 19
>PRK03624 putative acetyltransferase; Provisional
Probab=21.91 E-value=1.6e+02 Score=18.74 Aligned_cols=39 Identities=15% Similarity=0.046 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHhcCCcEEEeeccccCc---cccccCCCcc
Q psy14931 41 WVDLMQDALITAKNEGFDVFNALDLMENK---EFLGPLKFGI 79 (106)
Q Consensus 41 l~~L~~daLi~Ak~~gfDVfNaLdim~N~---~fL~~lKF~~ 79 (106)
-++|+..+...|++.|+....+--.-+|+ .+.++++|..
T Consensus 86 g~~ll~~~~~~~~~~~~~~~~~~~~~~N~~~~~~y~k~GF~~ 127 (140)
T PRK03624 86 GRALVARLEKKLIARGCPKINLQVREDNDAVLGFYEALGYEE 127 (140)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEEecCcHHHHHHHHHcCCcc
Confidence 35778877778999999988776666775 4788999886
No 20
>cd01780 PLC_epsilon_RA Ubiquitin-like domain of Phosphatidylinositide-specific phospholipase. PLC_epsilon_RA Phosphatidylinositide-specific phospholipase C (PLC) is a signaling enzyme that hydrolyzes membrane phospholipids to generate inositol triphosphate. PLC-epsilon represents a novel forth class of PLC that has a PLC catalytic core domain, a CDC25 guanine nucleotide exchange factor domain and two RA (Ras-association) domains of which the second is critical for Ras activation of the enzyme.
Probab=21.75 E-value=1e+02 Score=21.54 Aligned_cols=24 Identities=17% Similarity=0.178 Sum_probs=19.9
Q ss_pred CHHHHHHHHHHHHHhcCCcEEEee
Q psy14931 40 KWVDLMQDALITAKNEGFDVFNAL 63 (106)
Q Consensus 40 ~l~~L~~daLi~Ak~~gfDVfNaL 63 (106)
.-++.|+.||..|++..-|+-|..
T Consensus 24 Ta~Dvi~Qal~KA~rs~~~~~~fV 47 (93)
T cd01780 24 TAQDVIQQTLCKARRSNPNPSDFV 47 (93)
T ss_pred cHHHHHHHHHHHhccCCCCccceE
Confidence 356899999999999888887765
No 21
>PF13527 Acetyltransf_9: Acetyltransferase (GNAT) domain; PDB: 3SXN_C 2I00_D 1M4D_B 1M44_A 1M4G_B 1M4I_A 2OZG_A 2HV2_F 3N7Z_A 3RYO_B ....
Probab=21.67 E-value=2.3e+02 Score=18.15 Aligned_cols=54 Identities=22% Similarity=0.153 Sum_probs=35.8
Q ss_pred cceeeeeeeEEEeecC-----CCHHHHHHHHHHHHHhcCCcEEEeeccccCccccccCCCc
Q psy14931 23 HKSIKAAYSFYNVSFK-----TKWVDLMQDALITAKNEGFDVFNALDLMENKEFLGPLKFG 78 (106)
Q Consensus 23 ~~~l~aAY~~Y~~~~~-----~~l~~L~~daLi~Ak~~gfDVfNaLdim~N~~fL~~lKF~ 78 (106)
.+.+++|++---+... --.++||+.++..+++.|++..-..- .+..|-++++|+
T Consensus 67 g~~~~~~~i~~v~v~p~~R~~Gl~~~L~~~~~~~~~~~g~~~~~l~~--~~~~~Y~~~G~~ 125 (127)
T PF13527_consen 67 GKKFKAAYIGDVAVDPEYRGRGLGRQLMRALLERARERGVPFIFLFP--SSPPFYRRFGFE 125 (127)
T ss_dssp TEEEEEEEEEEEEE-GGGTTSSHHHHHHHHHHHHHHHTT-SEEEEE---SSHHHHHHTTEE
T ss_pred CEEEEEEEEEEEEECHHHcCCCHHHHHHHHHHHHHHhCCCCEEEEec--CChhhhhcCCCE
Confidence 3678888877533321 23579999999999999999654333 557777777664
No 22
>TIGR00124 cit_ly_ligase [citrate (pro-3S)-lyase] ligase. ATP is cleaved to AMP and pyrophosphate during the reaction. The carboxyl end is homologous to a number of cytidyltransferases that also release pyrophosphate.
Probab=21.58 E-value=92 Score=25.55 Aligned_cols=41 Identities=15% Similarity=-0.070 Sum_probs=34.5
Q ss_pred CHHHHHHHHHHHHHhcCCcEEEeeccccCccccccCCCccc
Q psy14931 40 KWVDLMQDALITAKNEGFDVFNALDLMENKEFLGPLKFGIG 80 (106)
Q Consensus 40 ~l~~L~~daLi~Ak~~gfDVfNaLdim~N~~fL~~lKF~~G 80 (106)
-..+||..++..|++.|+...-..+--.|..|.+++.|.+-
T Consensus 67 lg~~L~~~L~~~a~~~G~~~l~l~Tk~~~~~fy~klGF~~i 107 (332)
T TIGR00124 67 LALQLMTELENLAYELGRFHLFIFTKPEYAALFEYCGFKTL 107 (332)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEEECchHHHHHHHcCCEEe
Confidence 35789999999999999998887776677889999999763
No 23
>COG3612 Uncharacterized protein conserved in archaea [Function unknown]
Probab=21.55 E-value=55 Score=24.83 Aligned_cols=14 Identities=50% Similarity=0.603 Sum_probs=12.1
Q ss_pred HHHHHHHhcCCcEE
Q psy14931 47 DALITAKNEGFDVF 60 (106)
Q Consensus 47 daLi~Ak~~gfDVf 60 (106)
-||+.||+.|+|+=
T Consensus 130 aaLivake~Gidis 143 (157)
T COG3612 130 AALIVAKEFGIDIS 143 (157)
T ss_pred HHHHHHHHhCCCch
Confidence 57899999999984
No 24
>TIGR02382 wecD_rffC TDP-D-fucosamine acetyltransferase. This model represents the WecD protein (Formerly RffC) for the biosynthesis of enterobacterial common antigen (ECA), an outer leaflet, outer membrane glycolipid with a trisaccharide repeat unit. WecD is a member of the GNAT family of acetytransferases (pfam00583).
Probab=21.32 E-value=1.9e+02 Score=20.69 Aligned_cols=40 Identities=23% Similarity=0.145 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHhcCCcEEEeeccccCc---cccccCCCccc
Q psy14931 41 WVDLMQDALITAKNEGFDVFNALDLMENK---EFLGPLKFGIG 80 (106)
Q Consensus 41 l~~L~~daLi~Ak~~gfDVfNaLdim~N~---~fL~~lKF~~G 80 (106)
-++|++.++..|++.|+....+.-.-+|+ .|.++++|..-
T Consensus 141 G~~ll~~~~~~a~~~g~~~I~l~v~~~N~~A~~~Y~klGF~~~ 183 (191)
T TIGR02382 141 GAELMQTALNWCYARGLTRLRVATQMGNTAALRLYIRSGANIE 183 (191)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEeCCCCHHHHHHHHHcCCccc
Confidence 36899999999999999988777667774 57889999743
No 25
>PRK07757 acetyltransferase; Provisional
Probab=20.25 E-value=1.4e+02 Score=19.97 Aligned_cols=37 Identities=27% Similarity=0.233 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHhcCCcEEEeeccccCccccccCCCcc
Q psy14931 41 WVDLMQDALITAKNEGFDVFNALDLMENKEFLGPLKFGI 79 (106)
Q Consensus 41 l~~L~~daLi~Ak~~gfDVfNaLdim~N~~fL~~lKF~~ 79 (106)
-++|++.++..|++.|+...-.. -.+..|.++++|.+
T Consensus 83 g~~Ll~~l~~~a~~~g~~~i~~~--~~~~~~Y~k~GF~~ 119 (152)
T PRK07757 83 GRMLVEACLEEARELGVKRVFAL--TYQPEFFEKLGFRE 119 (152)
T ss_pred HHHHHHHHHHHHHhCCCCeEEEE--eCcHHHHHHCCCEE
Confidence 35788888888999998765332 24678899998886
No 26
>PRK10146 aminoalkylphosphonic acid N-acetyltransferase; Provisional
Probab=20.23 E-value=1.7e+02 Score=19.14 Aligned_cols=40 Identities=13% Similarity=0.046 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHhcCCcEEEeeccccC---ccccccCCCccc
Q psy14931 41 WVDLMQDALITAKNEGFDVFNALDLMEN---KEFLGPLKFGIG 80 (106)
Q Consensus 41 l~~L~~daLi~Ak~~gfDVfNaLdim~N---~~fL~~lKF~~G 80 (106)
-++||+.++..|++.|+.....-.-.+| ..|-++++|...
T Consensus 94 G~~Ll~~~~~~a~~~~~~~i~l~~~~~n~~a~~fY~~~Gf~~~ 136 (144)
T PRK10146 94 GSKLLAWAEEEARQAGAEMTELSTNVKRHDAHRFYLREGYEQS 136 (144)
T ss_pred HHHHHHHHHHHHHHcCCcEEEEecCCCchHHHHHHHHcCCchh
Confidence 4689999999999999987754333455 356778887654
No 27
>PRK10140 putative acetyltransferase YhhY; Provisional
Probab=20.02 E-value=1.8e+02 Score=19.38 Aligned_cols=47 Identities=21% Similarity=0.297 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHh-cCCcEEEeeccccCc---cccccCCCcccceeee-EEE
Q psy14931 41 WVDLMQDALITAKN-EGFDVFNALDLMENK---EFLGPLKFGIGDGNLQ-YYL 88 (106)
Q Consensus 41 l~~L~~daLi~Ak~-~gfDVfNaLdim~N~---~fL~~lKF~~GdG~L~-YYL 88 (106)
-++|++.++..|++ .|..-..+.-.-+|+ .|.+++.|.. .|.+. |+.
T Consensus 96 g~~ll~~l~~~~~~~~~~~~i~l~v~~~N~~a~~~y~k~GF~~-~g~~~~~~~ 147 (162)
T PRK10140 96 ASALMREMIEMCDNWLRVDRIELTVFVDNAPAIKVYKKYGFEI-EGTGKKYAL 147 (162)
T ss_pred HHHHHHHHHHHHHhhCCccEEEEEEEcCCHHHHHHHHHCCCEE-Eeeccccee
Confidence 46788888888887 688777666556674 4789999996 44443 443
Done!