RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14931
(106 letters)
>gnl|CDD|202401 pfam02799, NMT_C, Myristoyl-CoA:protein N-myristoyltransferase,
C-terminal domain. The N and C-terminal domains of NMT
are structurally similar, each adopting an acyl-CoA
N-acyltransferase-like fold.
Length = 190
Score = 186 bits (475), Expect = 4e-62
Identities = 63/104 (60%), Positives = 77/104 (74%), Gaps = 2/104 (1%)
Query: 4 VTDMVSYYTLPSTVMNHEVHKSIKAAYSFYNVSFKTKWVDLMQDALITAKNEGFDVFNAL 63
+TD S+Y+LPSTV+ + HK++KAAYSFY + T+ LM DALI AKN GFDVFNAL
Sbjct: 87 ITDFFSFYSLPSTVIGNPKHKTLKAAYSFYYAATSTRLKQLMNDALILAKNLGFDVFNAL 146
Query: 64 DLMENKEFLGPLKFGIGDGNLQYYLYNWKCPSI--PPNKIGLVL 105
DLM+NK FL LKFG GDG L YYLYN++CP I + +GLVL
Sbjct: 147 DLMDNKLFLEDLKFGPGDGQLNYYLYNYRCPPIMGGISGVGLVL 190
>gnl|CDD|227423 COG5092, NMT1, N-myristoyl transferase [Lipid metabolism].
Length = 451
Score = 104 bits (261), Expect = 6e-28
Identities = 46/108 (42%), Positives = 64/108 (59%), Gaps = 14/108 (12%)
Query: 4 VTDMVSYYTLPSTVMNHEVHKSIKAAYSFY--------------NVSFKTKWVDLMQDAL 49
+TD S+Y+LP T + ++ +K I+ Y +Y + KT+ +++ DA+
Sbjct: 322 ITDFFSFYSLPFTTIENKKYKDIQGGYLYYYAGDDQFKDFDPKATKALKTRVAEMVGDAM 381
Query: 50 ITAKNEGFDVFNALDLMENKEFLGPLKFGIGDGNLQYYLYNWKCPSIP 97
I AK EG DVFNAL +M+N FL LKFG GDG L YYLYN+K IP
Sbjct: 382 ILAKVEGCDVFNALTMMDNSLFLADLKFGCGDGFLNYYLYNYKSEEIP 429
>gnl|CDD|237257 PRK12902, secA, preprotein translocase subunit SecA; Reviewed.
Length = 939
Score = 30.0 bits (68), Expect = 0.20
Identities = 11/23 (47%), Positives = 17/23 (73%), Gaps = 2/23 (8%)
Query: 46 QDALITAKNEGFDVFNALDLMEN 68
+D LI KNEG+++F L++M N
Sbjct: 895 KDPLIEYKNEGYEMF--LEMMTN 915
>gnl|CDD|225244 COG2369, COG2369, Uncharacterized protein, homolog of phage Mu
protein gp30 [Function unknown].
Length = 432
Score = 28.7 bits (64), Expect = 0.55
Identities = 9/63 (14%), Positives = 23/63 (36%)
Query: 6 DMVSYYTLPSTVMNHEVHKSIKAAYSFYNVSFKTKWVDLMQDALITAKNEGFDVFNALDL 65
D + TL S + ++ YN +++D A++ G + +
Sbjct: 107 DNQTGETLGSPRRLETILRTNIRIAEQYNAGIVQQYLDKTIIAILQGVMAGQIIKDMAKE 166
Query: 66 MEN 68
+++
Sbjct: 167 IQD 169
>gnl|CDD|113403 pfam04631, Baculo_44, Baculovirus hypothetical protein. This
family includes several hypothetical baculoviral
proteins, with predicted molecular weights of
approximately 44 kD.
Length = 372
Score = 26.8 bits (60), Expect = 2.2
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 6/40 (15%)
Query: 37 FKTKWVDLMQDALITAKNEGFDVF-NALDLMENKEFLGPL 75
F++ W +LM+D F+V NALD+ N+ F+ PL
Sbjct: 203 FRSSWDELMEDG-----TRRFEVRCNALDINNNQMFVNPL 237
>gnl|CDD|178635 PLN03086, PLN03086, PRLI-interacting factor K; Provisional.
Length = 567
Score = 26.4 bits (58), Expect = 4.0
Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 6/33 (18%)
Query: 61 NALDLMENKEFLGPLKFG------IGDGNLQYY 87
+++ EN+ L PL+FG + +GN +YY
Sbjct: 259 DSVSNEENQHVLKPLEFGKSESGMVEEGNYRYY 291
>gnl|CDD|131042 TIGR01987, HI0074, nucleotidyltransferase substrate binding
protein, HI0074 family. The member of this family from
Haemophilus influenzae, HI0074, has been shown by
crystal structure to resemble nucleotidyltransferase
substrate binding proteins. It forms a complex with
HI0073, encoded by the adjacent gene and containing a
nucleotidyltransferase nucleotide binding domain
(pfam01909).
Length = 123
Score = 25.6 bits (56), Expect = 4.7
Identities = 6/27 (22%), Positives = 15/27 (55%)
Query: 26 IKAAYSFYNVSFKTKWVDLMQDALITA 52
+K A+ + ++ W+ ++ D IT+
Sbjct: 66 LKEAFRAGLIGDESLWIAMLDDRNITS 92
>gnl|CDD|193579 cd09890, NGN_plant, Plant N-Utilization Substance G (NusG)
N-terminal (NGN) domain. The N-Utilization Substance G
(NusG) protein and its eukaryotic homolog, Spt5, are
involved in transcription elongation and termination.
NusG contains a NGN domain at its N-terminus and
Kyrpides Ouzounis and Woese (KOW) repeats at its
C-terminus in bacteria and archaea. The eukaryotic
ortholog, Spt5, is a large protein comprising an acidic
N-terminus, an NGN domain, and multiple KOW motifs at
its C-terminus. Spt5 forms an Spt4-Spt5 complex that is
an essential RNA polymerase II elongation factor. The
bacterial infected plants contain bacterial DNA, such
as NGN sequences, that can be used to clone the DNA of
uncultured organisms.
Length = 113
Score = 25.0 bits (55), Expect = 6.1
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 11 YTLPSTVMNHEVHKSIKAAYSFYN 34
Y L V+N EV+ I+ S Y
Sbjct: 61 YVLLRCVLNKEVYDFIRDNDSVYG 84
>gnl|CDD|173749 cd07855, STKc_ERK5, Catalytic domain of the Serine/Threonine
Kinase, Extracellular signal-Regulated Kinase 5.
Serine/Threonine Kinases (STKs), Extracellular
signal-Regulated Kinase 5 (ERK5) subfamily, catalytic
(c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The ERK5 subfamily is
part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. MAPKs are important
mediators of cellular responses to extracellular
signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7,
has a unique C-terminal extension, making it
approximately twice as big as other MAPKs. This
extension contains transcriptional activation
capability which is inhibited by the N-terminal half.
ERK5 is activated in response to growth factors and
stress by a cascade that leads to its phosphorylation
by the MAP2K MEK5, which in turn is regulated by the
MAP3Ks MEKK2 and MEKK3. Activated ERK5 phosphorylates
its targets including myocyte enhancer factor 2 (MEF2),
Sap1a, c-Myc, and RSK. It plays a role in EGF-induced
cell proliferation during the G1/S phase transition.
Studies on knockout mice revealed that ERK5 is
essential for cardiovascular development and plays an
important role in angiogenesis. It is also critical for
neural differentiation and survival. The ERK5 pathway
has been implicated in the pathogenesis of many
diseases including cancer, cardiac hypertrophy, and
atherosclerosis.
Length = 334
Score = 25.4 bits (56), Expect = 6.3
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 47 DALITAKNEGFDVFNALDLMEN 68
D L + DV+ +DLME+
Sbjct: 71 DILRPPGADFKDVYVVMDLMES 92
>gnl|CDD|178273 PLN02668, PLN02668, indole-3-acetate carboxyl methyltransferase.
Length = 386
Score = 25.2 bits (55), Expect = 8.7
Identities = 9/24 (37%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Query: 37 FKTKWVDLMQDALITA-KNEGFDV 59
F+ W DL+Q+ L+T+ K + F++
Sbjct: 259 FQDAWDDLVQEGLVTSEKRDSFNI 282
>gnl|CDD|179366 PRK02102, PRK02102, ornithine carbamoyltransferase; Validated.
Length = 331
Score = 24.8 bits (55), Expect = 9.5
Identities = 18/47 (38%), Positives = 20/47 (42%), Gaps = 17/47 (36%)
Query: 52 AKNEGFDVFNAL-----------DLMENKEFLGPLKFGI-----GDG 82
AK G V+N L D M KE GPLK G+ GDG
Sbjct: 119 AKYSGVPVWNGLTDEWHPTQMLADFMTMKEHFGPLK-GLKLAYVGDG 164
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.136 0.417
Gapped
Lambda K H
0.267 0.0749 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,269,592
Number of extensions: 424691
Number of successful extensions: 303
Number of sequences better than 10.0: 1
Number of HSP's gapped: 302
Number of HSP's successfully gapped: 14
Length of query: 106
Length of database: 10,937,602
Length adjustment: 71
Effective length of query: 35
Effective length of database: 7,788,468
Effective search space: 272596380
Effective search space used: 272596380
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.2 bits)