RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14931
(106 letters)
>3iu1_A Glycylpeptide N-tetradecanoyltransferase 1; N-myristoyltransferase,
NMT1, acyltransferase, phosphoprotein, structural
genomics; HET: MYA; 1.42A {Homo sapiens} PDB: 3iu2_A*
3iwe_A* 3jtk_A*
Length = 383
Score = 163 bits (414), Expect = 6e-51
Identities = 77/103 (74%), Positives = 87/103 (84%)
Query: 4 VTDMVSYYTLPSTVMNHEVHKSIKAAYSFYNVSFKTKWVDLMQDALITAKNEGFDVFNAL 63
VTD +S+YTLPST+MNH HKS+KAAYSFYNV +T +DLM DAL+ AK +GFDVFNAL
Sbjct: 281 VTDFLSFYTLPSTIMNHPTHKSLKAAYSFYNVHTQTPLLDLMSDALVLAKMKGFDVFNAL 340
Query: 64 DLMENKEFLGPLKFGIGDGNLQYYLYNWKCPSIPPNKIGLVLQ 106
DLMENK FL LKFGIGDGNLQYYLYNWKCPS+ K+GLVLQ
Sbjct: 341 DLMENKTFLEKLKFGIGDGNLQYYLYNWKCPSMGAEKVGLVLQ 383
>1rxt_A Myristoyl-, glycylpeptide N-tetradecanoyltransferase 1; alpha-beta
structure, unique N-myristoyltransferase fold; 3.00A
{Homo sapiens} SCOP: d.108.1.2 d.108.1.2
Length = 496
Score = 165 bits (419), Expect = 1e-50
Identities = 76/103 (73%), Positives = 87/103 (84%)
Query: 4 VTDMVSYYTLPSTVMNHEVHKSIKAAYSFYNVSFKTKWVDLMQDALITAKNEGFDVFNAL 63
VTD +S+YTLPST+MNH HKS+KAAYSFYNV +T +DLM DAL+ AK +GFDVFNAL
Sbjct: 394 VTDFLSFYTLPSTIMNHPTHKSLKAAYSFYNVHTQTPLLDLMSDALVLAKMKGFDVFNAL 453
Query: 64 DLMENKEFLGPLKFGIGDGNLQYYLYNWKCPSIPPNKIGLVLQ 106
DLMENK FL LKFGIGDGNLQYYLYNWKCPS+ K+G+VLQ
Sbjct: 454 DLMENKTFLEKLKFGIGDGNLQYYLYNWKCPSMGAEKVGIVLQ 496
>4a95_A Glycylpeptide N-tetradecanoyltransferase; malaria; HET: 9MT NHM;
1.55A {Plasmodium vivax}
Length = 384
Score = 157 bits (397), Expect = 3e-48
Identities = 53/102 (51%), Positives = 75/102 (73%)
Query: 4 VTDMVSYYTLPSTVMNHEVHKSIKAAYSFYNVSFKTKWVDLMQDALITAKNEGFDVFNAL 63
+ DM+S+Y+LPS ++ ++ + ++ AAYSFYNV+ + LMQDA++ AK FDVFNAL
Sbjct: 282 IKDMISFYSLPSQILGNDKYSTLNAAYSFYNVTTTATFKQLMQDAILLAKRNNFDVFNAL 341
Query: 64 DLMENKEFLGPLKFGIGDGNLQYYLYNWKCPSIPPNKIGLVL 105
++M+NK LKFG GDG+L+YYLYNWKC S P +G+VL
Sbjct: 342 EVMQNKSVFEDLKFGEGDGSLKYYLYNWKCASFAPAHVGIVL 383
>2wuu_A N-myristoyltransferase; acyltransferase; HET: NHM; 1.42A
{Leishmania donovani} PDB: 3h5z_A* 4a2z_A* 4a30_A*
4a31_A* 4a32_A* 4a33_A* 2wsa_A*
Length = 421
Score = 152 bits (384), Expect = 4e-46
Identities = 43/102 (42%), Positives = 65/102 (63%)
Query: 4 VTDMVSYYTLPSTVMNHEVHKSIKAAYSFYNVSFKTKWVDLMQDALITAKNEGFDVFNAL 63
VTD S+Y +PSTV+ + + + AAY Y + L+ D LI A + GFDV N +
Sbjct: 319 VTDFFSFYRIPSTVIGNSNYNILNAAYVHYYAATSMPLHQLILDLLIVAHSRGFDVCNMV 378
Query: 64 DLMENKEFLGPLKFGIGDGNLQYYLYNWKCPSIPPNKIGLVL 105
++++N+ F+ LKFG GDG+L+YY YNW P I P+++ LV+
Sbjct: 379 EILDNRSFVEQLKFGAGDGHLRYYFYNWAYPKIKPSQVALVM 420
>1iyk_A Myristoyl-COA:protein N-myristoyltransferase; HET: MYA MIM; 2.30A
{Candida albicans} SCOP: d.108.1.2 d.108.1.2 PDB:
1iyl_A* 1nmt_A
Length = 392
Score = 132 bits (333), Expect = 7e-39
Identities = 47/123 (38%), Positives = 64/123 (52%), Gaps = 21/123 (17%)
Query: 4 VTDMVSYYTLPSTVMNHEVHKSIKAAYSFYNVS-------FKTKWVDLMQDALITAKNEG 56
+TD SYY LP TV+++ H + AY FY S +K + +L+ DALIT+K G
Sbjct: 269 ITDYFSYYLLPFTVLDNAQHDELGIAYLFYYASDSFEKPNYKKRLNELITDALITSKKFG 328
Query: 57 FDVFNALDLMENKEFLGPLKFGIGDGNLQYYLYNWKCPSIP--------------PNKIG 102
DVFN L +N FL KFG GDG L YYL+N++ + + IG
Sbjct: 329 VDVFNCLTCQDNTYFLKDCKFGSGDGFLNYYLFNYRTFPMDGGIDKKTKEVVEDQTSGIG 388
Query: 103 LVL 105
+VL
Sbjct: 389 VVL 391
>1iic_A Peptide N-myristoyltransferase; HET: MYA; 2.20A {Saccharomyces
cerevisiae} SCOP: d.108.1.2 d.108.1.2 PDB: 1iid_A*
2nmt_A* 2p6e_A* 2p6f_A* 2p6g_A*
Length = 422
Score = 130 bits (327), Expect = 8e-38
Identities = 43/132 (32%), Positives = 65/132 (49%), Gaps = 30/132 (22%)
Query: 4 VTDMVSYYTLPSTVMNHEVHKSIKAAYSFYNVS-----------------FKTKWVDLMQ 46
+TD S+Y+LP T++N+ +K + Y +Y + KT+ +L+
Sbjct: 290 ITDFFSFYSLPFTILNNTKYKDLGIGYLYYYATDADFQFKDRFDPKATKALKTRLCELIY 349
Query: 47 DALITAKNEGFDVFNALDLMENKEFLGPLKFGIGDGNLQYYLYNWKCPSIP--------- 97
DA I AKN DVFNAL +N FL LKFG GDG L +YL+N++ I
Sbjct: 350 DACILAKNANMDVFNALTSQDNTLFLDDLKFGPGDGFLNFYLFNYRAKPITGGLNPDNSN 409
Query: 98 ----PNKIGLVL 105
+ +G+V+
Sbjct: 410 DIKRRSNVGVVM 421
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 28.7 bits (63), Expect = 0.38
Identities = 19/107 (17%), Positives = 33/107 (30%), Gaps = 28/107 (26%)
Query: 9 SYYTLPS-------TVMN-HEVHKSIKAAYSFYNVSFKTKWVDLMQDA---------LIT 51
S ++PS + N + +H+SI Y+ + D L
Sbjct: 424 STISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKN 483
Query: 52 AKN-EGFDVFNA--LDL--MENK-EFLGPLKFGIGD-----GNLQYY 87
++ E +F LD +E K G L++Y
Sbjct: 484 IEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFY 530
Score = 25.6 bits (55), Expect = 4.2
Identities = 16/87 (18%), Positives = 32/87 (36%), Gaps = 22/87 (25%)
Query: 7 MVSYYTLPSTVMNHEVHKSIKAAYSFYN---------------VSFKTKWVDL--MQDAL 49
+V +Y +P T + ++ Y FY+ F+ ++D ++ +
Sbjct: 449 IVDHYNIPKTFDSDDLIPPYLDQY-FYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKI 507
Query: 50 I---TAKNEGFDVFNAL-DLMENKEFL 72
TA N + N L L K ++
Sbjct: 508 RHDSTAWNASGSILNTLQQLKFYKPYI 534
>3f8k_A Protein acetyltransferase; GCN5-related N-acetyltransferase; HET:
COA; 1.84A {Sulfolobus solfataricus P2}
Length = 160
Score = 25.4 bits (56), Expect = 3.6
Identities = 7/26 (26%), Positives = 10/26 (38%)
Query: 44 LMQDALITAKNEGFDVFNALDLMENK 69
L++ + AK G L EN
Sbjct: 94 LVKTLIEEAKKSGLSTVKFYTLPENT 119
>2zxr_A Single-stranded DNA specific exonuclease RECJ; DNA repair,
hydrolase; 2.15A {Thermus thermophilus} PDB: 2zxo_A
2zxp_A 1ir6_A
Length = 666
Score = 25.3 bits (56), Expect = 4.9
Identities = 5/24 (20%), Positives = 9/24 (37%), Gaps = 4/24 (16%)
Query: 55 EGFDVFNALDLMENKEFLGPLKFG 78
AL ++ L L++G
Sbjct: 373 APISAVEALR--SAEDLL--LRYG 392
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication,
DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Length = 200
Score = 24.5 bits (52), Expect = 7.8
Identities = 5/14 (35%), Positives = 9/14 (64%)
Query: 75 LKFGIGDGNLQYYL 88
+F + G LQ++L
Sbjct: 179 FQFDLKSGFLQFFL 192
>1yzf_A Lipase/acylhydrolase; structural GENO PSI, protein structure
initiative, midwest center for struc genomics, MCSG;
1.90A {Enterococcus faecalis} SCOP: c.23.10.5
Length = 195
Score = 24.2 bits (53), Expect = 8.8
Identities = 13/38 (34%), Positives = 16/38 (42%), Gaps = 2/38 (5%)
Query: 25 SIKAAYSFYNVSFKTKWVDLMQDALITAKNEGFDVFNA 62
SI A Y VS VDL++ + E V NA
Sbjct: 10 SITAGYLDEAVSPV--LVDLVKRDIAAMGLEEVAVINA 45
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.136 0.417
Gapped
Lambda K H
0.267 0.0563 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,616,852
Number of extensions: 79319
Number of successful extensions: 149
Number of sequences better than 10.0: 1
Number of HSP's gapped: 147
Number of HSP's successfully gapped: 15
Length of query: 106
Length of database: 6,701,793
Length adjustment: 71
Effective length of query: 35
Effective length of database: 4,719,402
Effective search space: 165179070
Effective search space used: 165179070
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.8 bits)