RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14931
         (106 letters)



>d1rxta2 d.108.1.2 (A:219-455) N-myristoyl transferase, NMT {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 201

 Score =  166 bits (423), Expect = 9e-55
 Identities = 76/103 (73%), Positives = 87/103 (84%)

Query: 4   VTDMVSYYTLPSTVMNHEVHKSIKAAYSFYNVSFKTKWVDLMQDALITAKNEGFDVFNAL 63
           VTD +S+YTLPST+MNH  HKS+KAAYSFYNV  +T  +DLM DAL+ AK +GFDVFNAL
Sbjct: 99  VTDFLSFYTLPSTIMNHPTHKSLKAAYSFYNVHTQTPLLDLMSDALVLAKMKGFDVFNAL 158

Query: 64  DLMENKEFLGPLKFGIGDGNLQYYLYNWKCPSIPPNKIGLVLQ 106
           DLMENK FL  LKFGIGDGNLQYYLYNWKCPS+   K+G+VLQ
Sbjct: 159 DLMENKTFLEKLKFGIGDGNLQYYLYNWKCPSMGAEKVGIVLQ 201


>d1iyka2 d.108.1.2 (A:225-451) N-myristoyl transferase, NMT {Yeast
           (Candida albicans) [TaxId: 5476]}
          Length = 227

 Score =  151 bits (384), Expect = 2e-48
 Identities = 47/123 (38%), Positives = 64/123 (52%), Gaps = 21/123 (17%)

Query: 4   VTDMVSYYTLPSTVMNHEVHKSIKAAYSFYNVS-------FKTKWVDLMQDALITAKNEG 56
           +TD  SYY LP TV+++  H  +  AY FY  S       +K +  +L+ DALIT+K  G
Sbjct: 104 ITDYFSYYLLPFTVLDNAQHDELGIAYLFYYASDSFEKPNYKKRLNELITDALITSKKFG 163

Query: 57  FDVFNALDLMENKEFLGPLKFGIGDGNLQYYLYNWKCPSIP--------------PNKIG 102
            DVFN L   +N  FL   KFG GDG L YYL+N++   +                + IG
Sbjct: 164 VDVFNCLTCQDNTYFLKDCKFGSGDGFLNYYLFNYRTFPMDGGIDKKTKEVVEDQTSGIG 223

Query: 103 LVL 105
           +VL
Sbjct: 224 VVL 226


>d1iica2 d.108.1.2 (A:219-455) N-myristoyl transferase, NMT {Baker's
           yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 237

 Score =  149 bits (377), Expect = 2e-47
 Identities = 43/134 (32%), Positives = 65/134 (48%), Gaps = 30/134 (22%)

Query: 2   TSVTDMVSYYTLPSTVMNHEVHKSIKAAYSFYNVS-----------------FKTKWVDL 44
             +TD  S+Y+LP T++N+  +K +   Y +Y  +                  KT+  +L
Sbjct: 103 GKITDFFSFYSLPFTILNNTKYKDLGIGYLYYYATDADFQFKDRFDPKATKALKTRLCEL 162

Query: 45  MQDALITAKNEGFDVFNALDLMENKEFLGPLKFGIGDGNLQYYLYNWKCPSIP------- 97
           + DA I AKN   DVFNAL   +N  FL  LKFG GDG L +YL+N++   I        
Sbjct: 163 IYDACILAKNANMDVFNALTSQDNTLFLDDLKFGPGDGFLNFYLFNYRAKPITGGLNPDN 222

Query: 98  ------PNKIGLVL 105
                  + +G+V+
Sbjct: 223 SNDIKRRSNVGVVM 236


>d1n1ja_ a.22.1.3 (A:) Nuclear transcription factor Y subunit beta
          (Nf-Yb3) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 87

 Score = 22.5 bits (48), Expect = 8.5
 Identities = 5/19 (26%), Positives = 10/19 (52%)

Query: 58 DVFNALDLMENKEFLGPLK 76
          D+  A+  +    ++ PLK
Sbjct: 61 DILFAMSTLGFDSYVEPLK 79


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.136    0.417 

Gapped
Lambda     K      H
   0.267   0.0411    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 401,328
Number of extensions: 15470
Number of successful extensions: 41
Number of sequences better than 10.0: 1
Number of HSP's gapped: 39
Number of HSP's successfully gapped: 7
Length of query: 106
Length of database: 2,407,596
Length adjustment: 66
Effective length of query: 40
Effective length of database: 1,501,416
Effective search space: 60056640
Effective search space used: 60056640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)