BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14933
(100 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q96RY7|IF140_HUMAN Intraflagellar transport protein 140 homolog OS=Homo sapiens
GN=IFT140 PE=1 SV=1
Length = 1462
Score = 94.7 bits (234), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 48/100 (48%), Positives = 63/100 (63%), Gaps = 16/100 (16%)
Query: 2 MRDFVGIECCDEVTRSAVINFSYYLNTGDLDQAFKSIAFIT----------------RLD 45
+RDFVG+E CD+ TR A+++FS+++ GD+D+AFKSI I RLD
Sbjct: 759 LRDFVGLEDCDKATRDAMLHFSFFVTIGDMDEAFKSIKLIKSEAVWENMARMCVKTQRLD 818
Query: 46 VACICLGNMRDIQGIWTLRYAQAEPELEARVAALAIHLQL 85
VA +CLGNM +G LR A+ EPELEARVA LA L +
Sbjct: 819 VAKVCLGNMGHARGARALREAEQEPELEARVAVLATQLGM 858
>sp|B3E621|SYGB_GEOLS Glycine--tRNA ligase beta subunit OS=Geobacter lovleyi (strain ATCC
BAA-1151 / DSM 17278 / SZ) GN=glyS PE=3 SV=1
Length = 687
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 4/88 (4%)
Query: 13 EVTRSAVINFSYYLNTGDLDQAFKSIAFITRLDVACICLGNMRDIQGIWTLRYAQAEPEL 72
E R+ + LN QA ++ AF+ + D+ +G ++QGI YA + E
Sbjct: 364 ERFRALAEQLAEQLNPAAKQQAART-AFLCKADLVSGMVGEFPEVQGIMGREYALHDGEE 422
Query: 73 EARVAALAIHLQLYVSDYSAADFPLSKL 100
A A+A H Y+ + D P S +
Sbjct: 423 TAVANAIAEH---YLPTQAGGDLPASDI 447
>sp|Q03F66|SYGB_PEDPA Glycine--tRNA ligase beta subunit OS=Pediococcus pentosaceus
(strain ATCC 25745 / 183-1w) GN=glyS PE=3 SV=1
Length = 690
Score = 31.6 bits (70), Expect = 1.5, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
Query: 17 SAVINFSYYLNTGDLDQAFKSIAFITRLDVACICLGNMRDIQGIWTLRYAQAEPELEARV 76
+ VI + LN +LD ++ I + D+ +G ++QG+ +YAQ E +A
Sbjct: 368 AKVIGNTLNLNQTELDDIDRA-TMIYKFDLVTGMVGEFSELQGVMGEKYAQLNGENQAVA 426
Query: 77 AALAIHLQLYVSDYSAADFPLS 98
A+ H Y+ + + D P S
Sbjct: 427 QAIREH---YMPNSAEGDLPES 445
>sp|P04165|CYB_MAIZE Cytochrome b OS=Zea mays GN=MT-CYB PE=3 SV=2
Length = 388
Score = 31.6 bits (70), Expect = 1.7, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 15/66 (22%)
Query: 28 TGDLDQAFKSIAFITRLDVACICLGNMRDIQGIWTLRYAQAEPELEARVAALAIHLQLYV 87
T +D AF S+ I MRD++G W LRY A A + + +HL ++
Sbjct: 61 TPHVDLAFNSVEHI------------MRDVEGGWLLRYMHAN---GASMFLIVVHLHIFR 105
Query: 88 SDYSAA 93
Y A+
Sbjct: 106 GLYHAS 111
>sp|P05718|CYB_VICFA Cytochrome b OS=Vicia faba GN=MT-CYB PE=3 SV=2
Length = 392
Score = 30.8 bits (68), Expect = 2.6, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 15/66 (22%)
Query: 28 TGDLDQAFKSIAFITRLDVACICLGNMRDIQGIWTLRYAQAEPELEARVAALAIHLQLYV 87
T +D AF S+ + MRD++G W LRY A A + + +HL ++
Sbjct: 61 TPHVDLAFNSVEHV------------MRDVEGGWLLRYMHAN---GASMFLIVVHLHIFR 105
Query: 88 SDYSAA 93
Y A+
Sbjct: 106 GLYHAS 111
>sp|Q9ZZT8|CYB_PEA Cytochrome b OS=Pisum sativum GN=MT-CYB PE=3 SV=1
Length = 392
Score = 30.8 bits (68), Expect = 2.6, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 15/66 (22%)
Query: 28 TGDLDQAFKSIAFITRLDVACICLGNMRDIQGIWTLRYAQAEPELEARVAALAIHLQLYV 87
T +D AF S+ + MRD++G W LRY A A + + +HL ++
Sbjct: 61 TPHVDLAFNSVEHV------------MRDVEGGWLLRYMHAN---GASMFLIVVHLHIFR 105
Query: 88 SDYSAA 93
Y A+
Sbjct: 106 GLYHAS 111
>sp|Q74FM7|SYGB_GEOSL Glycine--tRNA ligase beta subunit OS=Geobacter sulfurreducens
(strain ATCC 51573 / DSM 12127 / PCA) GN=glyS PE=3 SV=1
Length = 687
Score = 29.6 bits (65), Expect = 6.3, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Query: 39 AFITRLDVACICLGNMRDIQGIWTLRYAQAEPELEARVAALAIHLQLYVSDYSAADFPLS 98
AF+ + D+ +G ++QGI YA + E AA+A H Y+ + D P S
Sbjct: 389 AFLCKADLVSGMVGEFPEVQGIMGREYALLQGEDAEVAAAIAEH---YLPTQAGGDLPAS 445
Query: 99 KL 100
+
Sbjct: 446 DI 447
>sp|Q39RG5|SYGB_GEOMG Glycine--tRNA ligase beta subunit OS=Geobacter metallireducens
(strain GS-15 / ATCC 53774 / DSM 7210) GN=glyS PE=3 SV=1
Length = 686
Score = 29.3 bits (64), Expect = 8.5, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Query: 39 AFITRLDVACICLGNMRDIQGIWTLRYAQAEPELEARVAALAIHLQLYVSDYSAADFPLS 98
AF+ + D+ +G ++QGI YA E E AA+A H Y+ + + P S
Sbjct: 388 AFLCKADLVSGMVGEFPEVQGIMGREYALIEGEDAEVAAAIAEH---YLPTQAGGELPAS 444
Query: 99 KL 100
+
Sbjct: 445 DI 446
>sp|B3WEK6|SYGB_LACCB Glycine--tRNA ligase beta subunit OS=Lactobacillus casei (strain
BL23) GN=glyS PE=3 SV=1
Length = 689
Score = 28.9 bits (63), Expect = 8.8, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Query: 27 NTGDLDQAFKSIAFITRLDVACICLGNMRDIQGIWTLRYAQAEPELEARVAALAIHLQLY 86
+ DLD+A A I + D+ +G ++QGI YAQ E A A+A H +
Sbjct: 381 DKADLDRA----ASIYKFDLVTSMVGEFPELQGIMGEHYAQLAGEKPAVAQAIAEHYEPI 436
Query: 87 VSD 89
+D
Sbjct: 437 SAD 439
>sp|Q038U3|SYGB_LACC3 Glycine--tRNA ligase beta subunit OS=Lactobacillus casei (strain
ATCC 334) GN=glyS PE=3 SV=1
Length = 689
Score = 28.9 bits (63), Expect = 8.8, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Query: 27 NTGDLDQAFKSIAFITRLDVACICLGNMRDIQGIWTLRYAQAEPELEARVAALAIHLQLY 86
+ DLD+A A I + D+ +G ++QGI YAQ E A A+A H +
Sbjct: 381 DKADLDRA----ASIYKFDLVTSMVGEFPELQGIMGEHYAQLAGEKPAVAQAIAEHYEPI 436
Query: 87 VSD 89
+D
Sbjct: 437 SAD 439
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.327 0.139 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,598,445
Number of Sequences: 539616
Number of extensions: 1078126
Number of successful extensions: 3341
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 3339
Number of HSP's gapped (non-prelim): 10
length of query: 100
length of database: 191,569,459
effective HSP length: 69
effective length of query: 31
effective length of database: 154,335,955
effective search space: 4784414605
effective search space used: 4784414605
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)