Query psy14933
Match_columns 100
No_of_seqs 69 out of 71
Neff 3.6
Searched_HMMs 29240
Date Fri Aug 16 16:11:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14933.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14933hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mkq_A Coatomer beta'-subunit; 98.7 8.1E-09 2.8E-13 81.4 3.6 79 14-92 651-745 (814)
2 3mkq_B Coatomer subunit alpha; 96.2 0.021 7.3E-07 42.0 7.5 71 21-91 11-110 (177)
3 3mkq_A Coatomer beta'-subunit; 89.7 1.2 4.2E-05 34.9 7.3 68 24-92 690-758 (814)
4 1hxi_A PEX5, peroxisome target 85.4 4.8 0.00016 25.0 7.9 69 24-93 26-108 (121)
5 1xnf_A Lipoprotein NLPI; TPR, 83.5 6.6 0.00023 25.8 7.3 69 24-92 153-237 (275)
6 3qou_A Protein YBBN; thioredox 81.6 4.8 0.00016 28.6 6.5 34 59-92 204-241 (287)
7 2e2e_A Formate-dependent nitri 81.5 7.8 0.00027 24.5 8.1 70 24-93 53-138 (177)
8 4ga2_A E3 SUMO-protein ligase 80.2 2.6 8.9E-05 27.0 4.3 67 24-91 40-120 (150)
9 1elw_A TPR1-domain of HOP; HOP 78.9 6.6 0.00023 22.0 7.7 68 25-93 14-95 (118)
10 4f3v_A ESX-1 secretion system 77.2 6 0.0002 30.3 6.1 69 24-92 111-193 (282)
11 3q49_B STIP1 homology and U bo 75.5 10 0.00035 22.5 7.5 68 24-92 18-99 (137)
12 1elr_A TPR2A-domain of HOP; HO 75.3 9.2 0.00031 21.8 7.8 68 24-92 13-101 (131)
13 2lni_A Stress-induced-phosphop 74.8 9.9 0.00034 21.9 7.6 80 13-93 13-107 (133)
14 2pl2_A Hypothetical conserved 72.5 19 0.00064 24.1 8.2 18 75-92 123-140 (217)
15 2kck_A TPR repeat; tetratricop 72.1 10 0.00036 21.0 6.9 67 25-92 16-99 (112)
16 3mv2_B Coatomer subunit epsilo 71.1 21 0.00071 27.7 7.9 77 16-93 137-234 (310)
17 2fo7_A Synthetic consensus TPR 71.1 12 0.0004 21.1 7.3 67 25-92 45-125 (136)
18 2r5s_A Uncharacterized protein 70.9 15 0.0005 23.5 6.1 69 24-92 49-130 (176)
19 1w3b_A UDP-N-acetylglucosamine 70.5 18 0.00061 25.6 6.9 68 24-92 42-123 (388)
20 3vtx_A MAMA; tetratricopeptide 69.8 18 0.00061 22.7 7.8 15 25-39 49-63 (184)
21 2ho1_A Type 4 fimbrial biogene 68.3 22 0.00075 23.2 7.8 16 76-91 147-162 (252)
22 3uq3_A Heat shock protein STI1 67.8 18 0.00061 23.3 5.9 19 24-42 88-106 (258)
23 2q7f_A YRRB protein; TPR, prot 67.7 21 0.00073 22.8 8.1 16 76-91 199-214 (243)
24 2fo7_A Synthetic consensus TPR 66.3 15 0.00052 20.6 7.5 69 24-93 10-92 (136)
25 1fch_A Peroxisomal targeting s 66.1 29 0.001 23.8 7.3 19 75-93 335-353 (368)
26 4eqf_A PEX5-related protein; a 65.7 29 0.001 24.2 7.1 68 24-92 222-303 (365)
27 3mkr_A Coatomer subunit epsilo 65.6 34 0.0012 24.4 8.8 77 19-95 38-126 (291)
28 3as5_A MAMA; tetratricopeptide 65.4 20 0.00067 21.6 8.0 19 74-92 148-166 (186)
29 1a17_A Serine/threonine protei 65.1 20 0.00068 21.6 8.1 67 25-92 23-103 (166)
30 3mkr_A Coatomer subunit epsilo 65.1 26 0.00089 25.0 6.9 17 23-39 73-89 (291)
31 3gw4_A Uncharacterized protein 64.8 23 0.00078 22.1 7.7 18 75-92 71-88 (203)
32 2vyi_A SGTA protein; chaperone 64.7 17 0.00057 20.6 8.1 70 23-93 20-103 (131)
33 3sz7_A HSC70 cochaperone (SGT) 64.6 23 0.00079 22.1 8.1 68 24-92 20-101 (164)
34 2y4t_A DNAJ homolog subfamily 63.5 20 0.00069 25.6 6.0 16 77-92 264-279 (450)
35 2vgx_A Chaperone SYCD; alterna 63.4 26 0.00088 22.3 10.5 81 11-92 16-111 (148)
36 2q7f_A YRRB protein; TPR, prot 63.1 27 0.00091 22.4 8.1 14 26-39 68-81 (243)
37 3hym_B Cell division cycle pro 63.0 31 0.0011 23.0 7.7 67 25-92 135-215 (330)
38 2pl2_A Hypothetical conserved 62.9 31 0.0011 23.0 7.1 16 76-91 191-206 (217)
39 3hym_B Cell division cycle pro 62.6 32 0.0011 23.0 8.1 68 24-92 168-258 (330)
40 4gco_A Protein STI-1; structur 62.1 25 0.00087 21.8 7.3 81 11-92 8-103 (126)
41 3u4t_A TPR repeat-containing p 61.9 31 0.0011 22.7 7.2 17 76-92 114-130 (272)
42 2c2l_A CHIP, carboxy terminus 61.1 40 0.0014 23.7 7.8 68 24-92 13-94 (281)
43 1hh8_A P67PHOX, NCF-2, neutrop 61.0 29 0.001 22.1 7.9 67 25-92 47-143 (213)
44 1xnf_A Lipoprotein NLPI; TPR, 60.8 32 0.0011 22.5 8.7 68 24-92 52-133 (275)
45 3upv_A Heat shock protein STI1 60.7 23 0.0008 20.9 7.3 68 24-92 13-94 (126)
46 2xpi_A Anaphase-promoting comp 59.1 53 0.0018 24.5 8.2 17 23-39 381-397 (597)
47 3cv0_A Peroxisome targeting si 57.4 40 0.0014 22.5 8.1 20 75-94 291-310 (327)
48 2vq2_A PILW, putative fimbrial 56.2 34 0.0012 21.4 8.8 16 76-91 119-134 (225)
49 2vsy_A XCC0866; transferase, g 55.6 63 0.0021 24.8 8.0 16 76-91 97-112 (568)
50 3gyz_A Chaperone protein IPGC; 55.3 41 0.0014 22.1 10.6 81 11-92 31-126 (151)
51 1na0_A Designed protein CTPR3; 54.8 26 0.00088 19.6 8.5 69 24-93 18-100 (125)
52 2xpi_A Anaphase-promoting comp 54.5 64 0.0022 24.0 8.2 71 23-94 92-174 (597)
53 3cv0_A Peroxisome targeting si 54.3 45 0.0015 22.2 8.1 68 24-92 181-262 (327)
54 3ma5_A Tetratricopeptide repea 54.3 31 0.001 20.2 5.6 18 25-42 17-34 (100)
55 3k9i_A BH0479 protein; putativ 54.0 32 0.0011 20.4 5.4 30 12-41 23-53 (117)
56 1w3b_A UDP-N-acetylglucosamine 53.5 56 0.0019 23.0 7.2 15 25-39 77-91 (388)
57 3ulq_A Response regulator aspa 53.1 32 0.0011 24.5 5.6 77 17-93 55-166 (383)
58 3ieg_A DNAJ homolog subfamily 52.6 50 0.0017 22.2 9.9 70 23-93 128-211 (359)
59 3ieg_A DNAJ homolog subfamily 52.5 50 0.0017 22.1 8.1 69 24-93 12-94 (359)
60 2ho1_A Type 4 fimbrial biogene 52.2 45 0.0016 21.6 8.6 67 25-92 151-231 (252)
61 1fch_A Peroxisomal targeting s 51.9 55 0.0019 22.4 8.5 68 24-92 226-307 (368)
62 2xcb_A PCRH, regulatory protei 51.8 39 0.0013 20.7 10.6 83 10-93 12-109 (142)
63 4i17_A Hypothetical protein; T 50.4 49 0.0017 21.5 7.5 70 24-93 16-99 (228)
64 3hdf_A Lysozyme; antimicrobial 49.7 23 0.0008 24.2 4.3 23 10-32 68-90 (140)
65 2l6j_A TPR repeat-containing p 49.5 33 0.0011 19.2 6.8 68 24-92 13-100 (111)
66 2ion_A PDCD4, programmed cell 48.5 25 0.00084 24.5 4.3 34 9-42 3-36 (152)
67 2vq2_A PILW, putative fimbrial 48.3 47 0.0016 20.7 9.9 70 23-93 16-100 (225)
68 4gyw_A UDP-N-acetylglucosamine 48.2 59 0.002 27.4 7.3 15 25-39 19-33 (723)
69 2dba_A Smooth muscle cell asso 48.1 40 0.0014 19.7 8.0 69 24-93 37-122 (148)
70 1wao_1 Serine/threonine protei 48.0 71 0.0024 24.8 7.3 69 25-94 50-134 (477)
71 2xev_A YBGF; tetratricopeptide 47.1 40 0.0014 19.5 7.6 67 25-92 12-98 (129)
72 3edt_B KLC 2, kinesin light ch 45.2 59 0.002 20.9 8.2 80 13-93 82-192 (283)
73 2o7a_A Lysozyme; protein foldi 44.3 9 0.00031 26.4 1.4 24 9-32 31-54 (124)
74 3q15_A PSP28, response regulat 42.9 89 0.003 22.3 6.8 82 12-93 48-164 (378)
75 3mkq_B Coatomer subunit alpha; 42.8 92 0.0032 22.4 6.8 29 26-54 45-76 (177)
76 4e97_A Lysozyme; hydrolase, al 42.6 9.1 0.00031 27.1 1.3 42 10-51 113-154 (187)
77 2y4t_A DNAJ homolog subfamily 42.2 90 0.0031 22.1 9.9 69 23-92 34-116 (450)
78 2ifu_A Gamma-SNAP; membrane fu 41.6 63 0.0022 22.7 5.6 18 75-92 160-177 (307)
79 1qqe_A Vesicular transport pro 41.5 87 0.003 21.8 7.5 18 75-92 163-180 (292)
80 1ouv_A Conserved hypothetical 41.5 77 0.0026 21.1 8.3 14 26-39 17-30 (273)
81 1na3_A Designed protein CTPR2; 41.1 42 0.0014 18.1 5.1 17 24-40 18-34 (91)
82 2nsz_A Programmed cell death p 40.9 14 0.00049 24.8 2.0 22 21-42 13-34 (129)
83 3m5b_A Zinc finger and BTB dom 40.8 30 0.001 22.3 3.5 51 6-56 63-117 (119)
84 3nf1_A KLC 1, kinesin light ch 40.8 76 0.0026 20.9 8.2 80 13-93 108-218 (311)
85 2gw1_A Mitochondrial precursor 40.3 1E+02 0.0034 22.1 8.0 69 23-92 14-95 (514)
86 3edt_B KLC 2, kinesin light ch 39.7 74 0.0025 20.4 7.4 80 13-93 40-150 (283)
87 4eqf_A PEX5-related protein; a 39.0 95 0.0032 21.5 8.4 69 23-92 73-155 (365)
88 4evx_A Putative phage endolysi 39.0 20 0.00068 23.4 2.4 22 10-31 77-98 (106)
89 3fp2_A TPR repeat-containing p 38.6 1.1E+02 0.0038 22.2 8.1 67 25-92 320-400 (537)
90 3vtx_A MAMA; tetratricopeptide 38.3 71 0.0024 19.8 7.3 69 23-92 81-163 (184)
91 3sf4_A G-protein-signaling mod 38.1 96 0.0033 21.3 8.0 18 75-92 312-329 (406)
92 3uq3_A Heat shock protein STI1 37.9 77 0.0026 20.2 8.1 68 24-92 148-229 (258)
93 3qou_A Protein YBBN; thioredox 37.9 65 0.0022 22.6 5.2 15 26-40 128-142 (287)
94 3as5_A MAMA; tetratricopeptide 37.8 64 0.0022 19.2 8.9 68 25-93 52-133 (186)
95 2vsy_A XCC0866; transferase, g 37.5 1.4E+02 0.0047 22.9 8.1 67 25-92 67-150 (568)
96 3urz_A Uncharacterized protein 37.0 88 0.003 20.5 8.4 19 74-92 92-110 (208)
97 4gyw_A UDP-N-acetylglucosamine 36.4 1.6E+02 0.0055 24.7 8.1 67 25-92 53-133 (723)
98 4a1s_A PINS, partner of inscut 36.2 1.1E+02 0.0038 21.4 7.9 18 75-92 348-365 (411)
99 2kat_A Uncharacterized protein 35.9 65 0.0022 18.7 5.4 18 24-41 28-45 (115)
100 3qb5_K Translin-associated pro 35.8 35 0.0012 26.3 3.7 44 25-68 205-267 (290)
101 1p5q_A FKBP52, FK506-binding p 35.5 1.2E+02 0.0043 21.8 6.8 67 24-91 205-285 (336)
102 4i17_A Hypothetical protein; T 35.5 89 0.0031 20.2 8.5 69 24-93 51-140 (228)
103 3fp2_A TPR repeat-containing p 35.0 1.3E+02 0.0044 21.8 7.5 69 23-92 251-332 (537)
104 4b4t_R RPN7, 26S proteasome re 35.0 73 0.0025 24.7 5.5 45 23-67 139-195 (429)
105 3axj_B TRAX, translin associat 34.6 57 0.0019 25.2 4.8 42 25-66 216-276 (298)
106 2gw1_A Mitochondrial precursor 34.5 1.3E+02 0.0043 21.6 7.5 69 24-93 313-395 (514)
107 4fhn_B Nucleoporin NUP120; pro 34.0 36 0.0012 29.9 3.9 32 11-42 932-965 (1139)
108 3axj_A GM27569P, translin; tra 34.0 32 0.0011 26.0 3.2 43 25-67 173-233 (249)
109 3urz_A Uncharacterized protein 33.6 1E+02 0.0035 20.2 6.6 16 76-91 163-178 (208)
110 2vpk_A Myoneurin; transcriptio 33.2 85 0.0029 19.3 4.7 45 10-54 66-114 (116)
111 4ga2_A E3 SUMO-protein ligase 32.9 91 0.0031 19.5 8.5 68 25-92 7-87 (150)
112 3ro2_A PINS homolog, G-protein 32.8 1E+02 0.0035 20.1 7.6 18 75-92 268-285 (338)
113 4abn_A Tetratricopeptide repea 32.6 1.3E+02 0.0046 22.8 6.5 18 75-92 263-280 (474)
114 2kc7_A BFR218_protein; tetratr 32.1 69 0.0023 17.8 4.1 18 24-41 9-26 (99)
115 3ro3_A PINS homolog, G-protein 32.1 75 0.0026 18.3 8.0 19 75-93 134-152 (164)
116 1hh8_A P67PHOX, NCF-2, neutrop 30.7 1E+02 0.0035 19.4 7.2 68 24-92 15-93 (213)
117 1te4_A Conserved protein MTH18 29.3 59 0.002 20.3 3.4 23 49-71 95-117 (131)
118 1xju_A Lysozyme; secreted inac 29.0 22 0.00077 24.9 1.5 22 10-31 72-93 (163)
119 2o4w_A Lysozyme; protein foldi 28.5 22 0.00077 25.0 1.4 23 9-31 78-100 (171)
120 2fbn_A 70 kDa peptidylprolyl i 28.2 1.2E+02 0.0041 19.4 7.3 19 74-92 126-144 (198)
121 3ro2_A PINS homolog, G-protein 28.1 1.3E+02 0.0043 19.6 7.8 68 24-92 14-105 (338)
122 4abn_A Tetratricopeptide repea 26.8 1.4E+02 0.0048 22.7 5.8 68 25-93 112-202 (474)
123 3sf4_A G-protein-signaling mod 26.1 1.6E+02 0.0055 20.1 7.5 69 24-93 196-290 (406)
124 4a1s_A PINS, partner of inscut 25.9 1.7E+02 0.0059 20.4 7.9 69 24-93 232-326 (411)
125 1j1j_A Translin; testis/brain 25.6 29 0.00098 26.0 1.6 42 25-66 170-229 (240)
126 1ihg_A Cyclophilin 40; ppiase 25.6 2.1E+02 0.0071 21.3 7.9 68 24-92 232-329 (370)
127 1swy_A Lysozyme; RB+ binding s 25.6 47 0.0016 22.8 2.7 24 9-32 89-112 (164)
128 1wao_1 Serine/threonine protei 25.4 1.9E+02 0.0064 22.3 6.3 67 25-92 16-96 (477)
129 2pzi_A Probable serine/threoni 25.4 2.7E+02 0.0091 22.5 7.7 15 25-39 443-457 (681)
130 2yy9_A Zinc finger and BTB dom 25.4 1.3E+02 0.0043 19.3 4.6 50 7-56 64-117 (135)
131 2anv_A Lysozyme; direct method 25.1 28 0.00095 23.8 1.4 22 10-31 78-99 (146)
132 1taf_A TFIID TBP associated fa 25.0 43 0.0015 20.9 2.1 29 6-34 14-42 (68)
133 3u4t_A TPR repeat-containing p 24.3 1.5E+02 0.0051 19.2 8.0 68 24-92 12-96 (272)
134 3u3w_A Transcriptional activat 24.2 1.8E+02 0.006 20.0 9.9 81 12-92 71-177 (293)
135 2pzi_A Probable serine/threoni 23.9 2.3E+02 0.008 22.8 6.8 68 24-92 400-489 (681)
136 3ulq_A Response regulator aspa 23.7 2E+02 0.0067 20.3 8.6 69 24-93 193-287 (383)
137 3qky_A Outer membrane assembly 23.7 1.6E+02 0.0056 19.4 6.8 67 25-92 25-119 (261)
138 1xjt_A Lysozyme; open conforma 23.6 32 0.0011 24.9 1.5 23 10-32 100-122 (191)
139 3nf1_A KLC 1, kinesin light ch 23.3 1.6E+02 0.0055 19.2 9.2 87 6-93 17-134 (311)
140 3rkv_A Putative peptidylprolyl 22.7 1.4E+02 0.0048 18.3 7.1 18 74-91 101-118 (162)
141 3ltj_A Alpharep-4; protein eng 22.7 1.6E+02 0.0056 19.0 6.6 23 49-71 67-89 (201)
142 3bee_A Putative YFRE protein; 22.6 77 0.0027 19.3 3.0 35 57-91 26-64 (93)
143 3ltm_A Alpha-REP4; protein eng 22.6 79 0.0027 20.8 3.2 23 49-71 72-94 (211)
144 3q15_A PSP28, response regulat 21.4 2.2E+02 0.0076 20.1 8.5 69 24-93 191-284 (378)
145 3b84_A Zinc finger and BTB dom 21.3 1.6E+02 0.0054 18.3 4.6 48 8-55 64-115 (119)
146 2zu6_B Programmed cell death p 20.4 45 0.0016 25.7 1.9 21 22-42 173-193 (307)
147 1b89_A Protein (clathrin heavy 20.4 2E+02 0.0067 23.5 5.7 66 27-93 134-200 (449)
148 2ond_A Cleavage stimulation fa 20.3 2.2E+02 0.0076 19.7 7.3 11 81-91 252-262 (308)
149 2qb0_B Telsam domain - lysozym 20.2 40 0.0014 25.0 1.4 23 9-31 168-190 (241)
No 1
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=98.69 E-value=8.1e-09 Score=81.39 Aligned_cols=79 Identities=16% Similarity=0.167 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHhhcCCHHHHHHHhHhHH----------------HHHHHHHHhhcccchHHHHHHHHHhhCchHHHHHH
Q psy14933 14 VTRSAVINFSYYLNTGDLDQAFKSIAFIT----------------RLDVACICLGNMRDIQGIWTLRYAQAEPELEARVA 77 (100)
Q Consensus 14 ~tr~All~Fs~~Lt~GnmD~Afkaik~Ik----------------RlDVA~vCLG~m~~ar~A~alR~A~~e~e~ea~vA 77 (100)
-+++...+|++++..||||+|++..+.++ ++++|+.|+.++|+..++..|.....+++...+++
T Consensus 651 ~~~~~~~~f~~~l~~~~~~~A~~~~~~~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~ 730 (814)
T 3mkq_A 651 ISPDQDQKFELALKVGQLTLARDLLTDESAEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLA 730 (814)
T ss_dssp HCCCHHHHHHHHHHHTCHHHHHHHHTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCCCcchheehhhhcCCHHHHHHHHHhhCcHhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHH
Confidence 34456778999999999999999999876 89999999999999999999988877777667777
Q ss_pred HHHHHhcchhhhhhh
Q psy14933 78 ALAIHLQLYVSDYSA 92 (100)
Q Consensus 78 ~lAi~LGm~dEA~~~ 92 (100)
-+|.+.|+++.|+.+
T Consensus 731 ~~a~~~~~~~~A~~~ 745 (814)
T 3mkq_A 731 KDAETTGKFNLAFNA 745 (814)
T ss_dssp HHHHHTTCHHHHHHH
T ss_pred HHHHHcCchHHHHHH
Confidence 777776666666654
No 2
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.15 E-value=0.021 Score=42.03 Aligned_cols=71 Identities=13% Similarity=0.137 Sum_probs=52.7
Q ss_pred HHHHHhhcCCHHHHHHHhHhHH----------------HHHHHHHHhhcccchHHHHHHHHHhhCchHHHHHHHH-----
Q psy14933 21 NFSYYLNTGDLDQAFKSIAFIT----------------RLDVACICLGNMRDIQGIWTLRYAQAEPELEARVAAL----- 79 (100)
Q Consensus 21 ~Fs~~Lt~GnmD~Afkaik~Ik----------------RlDVA~vCLG~m~~ar~A~alR~A~~e~e~ea~vA~l----- 79 (100)
.|...|..||+|.|+...+.+. .+++|+.|+-+.|+.-+..-|.....+-+.-.+++.+
T Consensus 11 rF~LAL~lg~l~~A~e~a~~l~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~~L~~Ly~~tg~~e~L~kla~iA~~~g 90 (177)
T 3mkq_B 11 RFDLALEYGNLDAALDEAKKLNDSITWERLIQEALAQGNASLAEMIYQTQHSFDKLSFLYLVTGDVNKLSKMQNIAQTRE 90 (177)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhcCCHHHHHHHHHHhCCHHHHHHHHHHHHHcCChHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHHHCc
Confidence 4999999999999999988655 8999999999999999887776665544332333333
Q ss_pred --------HHHhcchhhhhh
Q psy14933 80 --------AIHLQLYVSDYS 91 (100)
Q Consensus 80 --------Ai~LGm~dEA~~ 91 (100)
+..+|.++++.+
T Consensus 91 ~~n~af~~~l~lGdv~~~i~ 110 (177)
T 3mkq_B 91 DFGSMLLNTFYNNSTKERSS 110 (177)
T ss_dssp CHHHHHHHHHHHTCHHHHHH
T ss_pred cHHHHHHHHHHcCCHHHHHH
Confidence 346666666654
No 3
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=89.71 E-value=1.2 Score=34.95 Aligned_cols=68 Identities=6% Similarity=-0.054 Sum_probs=43.2
Q ss_pred HHhhcCCHHHHHHHhHhHHHHHHHHHHhhcccchH-HHHHHHHHhhCchHHHHHHHHHHHhcchhhhhhh
Q psy14933 24 YYLNTGDLDQAFKSIAFITRLDVACICLGNMRDIQ-GIWTLRYAQAEPELEARVAALAIHLQLYVSDYSA 92 (100)
Q Consensus 24 ~~Lt~GnmD~Afkaik~IkRlDVA~vCLG~m~~ar-~A~alR~A~~e~e~ea~vA~lAi~LGm~dEA~~~ 92 (100)
++|..||++.|-++-..++..+-+....-..|+.. -.++.+.|+.+++.+... .+++++|.+++|+++
T Consensus 690 ~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~~~~A~-~~~~~~g~~~~a~~~ 758 (814)
T 3mkq_A 690 ASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGKFNLAF-NAYWIAGDIQGAKDL 758 (814)
T ss_dssp HHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHTCHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcCchHHHH-HHHHHcCCHHHHHHH
Confidence 57889999999999998885554444433344443 245667777776544332 236667777777664
No 4
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=85.44 E-value=4.8 Score=24.97 Aligned_cols=69 Identities=13% Similarity=0.081 Sum_probs=46.7
Q ss_pred HHhhcCCHHHHHHHhHhHH---------HHHHHHHHhhcccc-hHHHHHHHHHhh-Cch-HH--HHHHHHHHHhcchhhh
Q psy14933 24 YYLNTGDLDQAFKSIAFIT---------RLDVACICLGNMRD-IQGIWTLRYAQA-EPE-LE--ARVAALAIHLQLYVSD 89 (100)
Q Consensus 24 ~~Lt~GnmD~Afkaik~Ik---------RlDVA~vCLG~m~~-ar~A~alR~A~~-e~e-~e--a~vA~lAi~LGm~dEA 89 (100)
-++..|+.++|....+..- ....+.++. .+|+ ..+..++++|.+ +|+ .+ ..++.+-.++|.+++|
T Consensus 26 ~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~-~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A 104 (121)
T 1hxi_A 26 SMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQA-ENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAA 104 (121)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 4567899999998887544 444555444 4444 455567777764 453 33 4478888999999999
Q ss_pred hhhc
Q psy14933 90 YSAA 93 (100)
Q Consensus 90 ~~~a 93 (100)
.+.-
T Consensus 105 ~~~~ 108 (121)
T 1hxi_A 105 LASL 108 (121)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8653
No 5
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=83.46 E-value=6.6 Score=25.84 Aligned_cols=69 Identities=13% Similarity=0.057 Sum_probs=44.8
Q ss_pred HHhhcCCHHHHHHHhH-hHH-------HHHHHHHHhhcccchHHHHHHHHHhhCch--------HHHHHHHHHHHhcchh
Q psy14933 24 YYLNTGDLDQAFKSIA-FIT-------RLDVACICLGNMRDIQGIWTLRYAQAEPE--------LEARVAALAIHLQLYV 87 (100)
Q Consensus 24 ~~Lt~GnmD~Afkaik-~Ik-------RlDVA~vCLG~m~~ar~A~alR~A~~e~e--------~ea~vA~lAi~LGm~d 87 (100)
.....|+.++|.+..+ .++ ..-.+.+++++.+...+...++++.+... .-..+|.+-..+|.++
T Consensus 153 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 232 (275)
T 1xnf_A 153 LAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLD 232 (275)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHH
Confidence 3355578888877773 333 34467777777777666666666665431 1234677788888888
Q ss_pred hhhhh
Q psy14933 88 SDYSA 92 (100)
Q Consensus 88 EA~~~ 92 (100)
+|.+.
T Consensus 233 ~A~~~ 237 (275)
T 1xnf_A 233 SATAL 237 (275)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88764
No 6
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=81.56 E-value=4.8 Score=28.61 Aligned_cols=34 Identities=18% Similarity=0.096 Sum_probs=21.9
Q ss_pred HHHHHHHHhh-Cch-HHH--HHHHHHHHhcchhhhhhh
Q psy14933 59 GIWTLRYAQA-EPE-LEA--RVAALAIHLQLYVSDYSA 92 (100)
Q Consensus 59 ~A~alR~A~~-e~e-~ea--~vA~lAi~LGm~dEA~~~ 92 (100)
+...++++.+ +|+ .++ .+|.+-.+.|.+++|...
T Consensus 204 a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~ 241 (287)
T 3qou_A 204 EIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALEL 241 (287)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHH
Confidence 4555666653 453 343 377777888888888764
No 7
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=81.51 E-value=7.8 Score=24.45 Aligned_cols=70 Identities=16% Similarity=0.039 Sum_probs=48.3
Q ss_pred HHhhcCCHHHHHHHhHhHH---------HHHHHHHHhhcccc---hHHHHHHHHHhhC-ch---HHHHHHHHHHHhcchh
Q psy14933 24 YYLNTGDLDQAFKSIAFIT---------RLDVACICLGNMRD---IQGIWTLRYAQAE-PE---LEARVAALAIHLQLYV 87 (100)
Q Consensus 24 ~~Lt~GnmD~Afkaik~Ik---------RlDVA~vCLG~m~~---ar~A~alR~A~~e-~e---~ea~vA~lAi~LGm~d 87 (100)
.|...|+.++|.+..+..- ....|.+..-..|+ ..+...++++.+. |. .--.+|.+..++|.++
T Consensus 53 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 132 (177)
T 2e2e_A 53 YYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYA 132 (177)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHH
Confidence 4567899999988877443 44556553434555 6677778887643 42 2345888899999999
Q ss_pred hhhhhc
Q psy14933 88 SDYSAA 93 (100)
Q Consensus 88 EA~~~a 93 (100)
+|.+.-
T Consensus 133 ~A~~~~ 138 (177)
T 2e2e_A 133 QAIELW 138 (177)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998753
No 8
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=80.22 E-value=2.6 Score=27.05 Aligned_cols=67 Identities=13% Similarity=0.101 Sum_probs=41.7
Q ss_pred HHhhcCCHHHHHHHhHhH-H--------HHHHHHHHhhcccch-HHHHHHHHHhh-Cch-HH--HHHHHHHHHhcchhhh
Q psy14933 24 YYLNTGDLDQAFKSIAFI-T--------RLDVACICLGNMRDI-QGIWTLRYAQA-EPE-LE--ARVAALAIHLQLYVSD 89 (100)
Q Consensus 24 ~~Lt~GnmD~Afkaik~I-k--------RlDVA~vCLG~m~~a-r~A~alR~A~~-e~e-~e--a~vA~lAi~LGm~dEA 89 (100)
.|...|+.++|.+..+-. + ....+. |+-++|+. .+....++|.+ +|. .+ -.+|.+-.++|.++||
T Consensus 40 ~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~-~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a 118 (150)
T 4ga2_A 40 LYYEAKEYDLAKKYICTYINVQERDPKAHRFLGL-LYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGR 118 (150)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH-HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH-HHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHH
Confidence 467789999998887643 3 333333 44445554 44455667664 442 23 4578888889998876
Q ss_pred hh
Q psy14933 90 YS 91 (100)
Q Consensus 90 ~~ 91 (100)
.+
T Consensus 119 a~ 120 (150)
T 4ga2_A 119 AK 120 (150)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 9
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=78.86 E-value=6.6 Score=22.01 Aligned_cols=68 Identities=15% Similarity=0.052 Sum_probs=43.4
Q ss_pred HhhcCCHHHHHHHhHhHH---------HHHHHHHHhhcccch-HHHHHHHHHhhC-c---hHHHHHHHHHHHhcchhhhh
Q psy14933 25 YLNTGDLDQAFKSIAFIT---------RLDVACICLGNMRDI-QGIWTLRYAQAE-P---ELEARVAALAIHLQLYVSDY 90 (100)
Q Consensus 25 ~Lt~GnmD~Afkaik~Ik---------RlDVA~vCLG~m~~a-r~A~alR~A~~e-~---e~ea~vA~lAi~LGm~dEA~ 90 (100)
++..|+.++|.+..+..- ....|.++. ++|+. .+...++++.+. | +.-...+.+..++|.+++|.
T Consensus 14 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~ 92 (118)
T 1elw_A 14 ALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYA-KKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAK 92 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH-hhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHH
Confidence 456899999988777543 344454443 44444 344456666533 3 23355788889999999998
Q ss_pred hhc
Q psy14933 91 SAA 93 (100)
Q Consensus 91 ~~a 93 (100)
+..
T Consensus 93 ~~~ 95 (118)
T 1elw_A 93 RTY 95 (118)
T ss_dssp HHH
T ss_pred HHH
Confidence 753
No 10
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=77.18 E-value=6 Score=30.29 Aligned_cols=69 Identities=14% Similarity=0.049 Sum_probs=34.9
Q ss_pred HHhhcCCHHHHHHHhHhHH--------HHHHHHHHhhcccchHHHHHHHHHhhCc----hH--HHHHHHHHHHhcchhhh
Q psy14933 24 YYLNTGDLDQAFKSIAFIT--------RLDVACICLGNMRDIQGIWTLRYAQAEP----EL--EARVAALAIHLQLYVSD 89 (100)
Q Consensus 24 ~~Lt~GnmD~Afkaik~Ik--------RlDVA~vCLG~m~~ar~A~alR~A~~e~----e~--ea~vA~lAi~LGm~dEA 89 (100)
.+...|++++|.+.+..+. +...+.+|+..=....+...++++.+.| +. -..++..+.+||+++||
T Consensus 111 ~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eA 190 (282)
T 4f3v_A 111 CEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEA 190 (282)
T ss_dssp HHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHH
Confidence 4556777888877776553 3333333332222233333444444432 11 22356666777777776
Q ss_pred hhh
Q psy14933 90 YSA 92 (100)
Q Consensus 90 ~~~ 92 (100)
.+.
T Consensus 191 l~~ 193 (282)
T 4f3v_A 191 ERR 193 (282)
T ss_dssp HHH
T ss_pred HHH
Confidence 553
No 11
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=75.52 E-value=10 Score=22.46 Aligned_cols=68 Identities=12% Similarity=0.070 Sum_probs=44.1
Q ss_pred HHhhcCCHHHHHHHhHhHH---------HHHHHHHHhhcccch-HHHHHHHHHhh-Cc---hHHHHHHHHHHHhcchhhh
Q psy14933 24 YYLNTGDLDQAFKSIAFIT---------RLDVACICLGNMRDI-QGIWTLRYAQA-EP---ELEARVAALAIHLQLYVSD 89 (100)
Q Consensus 24 ~~Lt~GnmD~Afkaik~Ik---------RlDVA~vCLG~m~~a-r~A~alR~A~~-e~---e~ea~vA~lAi~LGm~dEA 89 (100)
.++..|+.++|....+..- ....+. |+-++|+- .+...++++.+ +| +.--.++.+..++|.+++|
T Consensus 18 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~-~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A 96 (137)
T 3q49_B 18 RLFVGRKYPEAAACYGRAITRNPLVAVYYTNRAL-CYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEA 96 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH-HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHH-HHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhhHHHH
Confidence 4667899999988877433 333343 34445554 34445666654 34 2335588999999999999
Q ss_pred hhh
Q psy14933 90 YSA 92 (100)
Q Consensus 90 ~~~ 92 (100)
++.
T Consensus 97 ~~~ 99 (137)
T 3q49_B 97 IAN 99 (137)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 12
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=75.33 E-value=9.2 Score=21.83 Aligned_cols=68 Identities=15% Similarity=0.004 Sum_probs=41.8
Q ss_pred HHhhcCCHHHHHHHhHhHH---------HHHHHHHHhhcccchH-HHHHHHHHhhC-----------chHHHHHHHHHHH
Q psy14933 24 YYLNTGDLDQAFKSIAFIT---------RLDVACICLGNMRDIQ-GIWTLRYAQAE-----------PELEARVAALAIH 82 (100)
Q Consensus 24 ~~Lt~GnmD~Afkaik~Ik---------RlDVA~vCLG~m~~ar-~A~alR~A~~e-----------~e~ea~vA~lAi~ 82 (100)
.+...|+.++|.+..+..- ...+|.+ +..+|+.. +...++++.+. +..-..+|.+..+
T Consensus 13 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~-~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 91 (131)
T 1elr_A 13 DAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAV-YFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFK 91 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHH-HHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHH
Confidence 4567899999988776443 3344443 33445443 33445554432 2223457888899
Q ss_pred hcchhhhhhh
Q psy14933 83 LQLYVSDYSA 92 (100)
Q Consensus 83 LGm~dEA~~~ 92 (100)
+|.+++|.+.
T Consensus 92 ~~~~~~A~~~ 101 (131)
T 1elr_A 92 EEKYKDAIHF 101 (131)
T ss_dssp TTCHHHHHHH
T ss_pred hccHHHHHHH
Confidence 9999999865
No 13
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=74.85 E-value=9.9 Score=21.95 Aligned_cols=80 Identities=16% Similarity=0.048 Sum_probs=49.1
Q ss_pred HHHHHHHHHHH-HHhhcCCHHHHHHHhHhHH---------HHHHHHHHhhcccch-HHHHHHHHHhhC-c---hHHHHHH
Q psy14933 13 EVTRSAVINFS-YYLNTGDLDQAFKSIAFIT---------RLDVACICLGNMRDI-QGIWTLRYAQAE-P---ELEARVA 77 (100)
Q Consensus 13 ~~tr~All~Fs-~~Lt~GnmD~Afkaik~Ik---------RlDVA~vCLG~m~~a-r~A~alR~A~~e-~---e~ea~vA 77 (100)
+.+..++.+.. .+...|+.++|.+..+..- ....|.+ +-.+|+. .+...++++.+. | +.-..+|
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~-~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la 91 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAAC-YTKLLEFQLALKDCEECIQLEPTFIKGYTRKA 91 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHH-HTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH-HHHhccHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 33444444443 4567899999988776433 3444444 3445554 344456666543 3 2345578
Q ss_pred HHHHHhcchhhhhhhc
Q psy14933 78 ALAIHLQLYVSDYSAA 93 (100)
Q Consensus 78 ~lAi~LGm~dEA~~~a 93 (100)
.+..++|.+++|.+..
T Consensus 92 ~~~~~~~~~~~A~~~~ 107 (133)
T 2lni_A 92 AALEAMKDYTKAMDVY 107 (133)
T ss_dssp HHHHHTTCHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHH
Confidence 8889999999998753
No 14
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=72.50 E-value=19 Score=24.11 Aligned_cols=18 Identities=6% Similarity=-0.173 Sum_probs=10.9
Q ss_pred HHHHHHHHhcchhhhhhh
Q psy14933 75 RVAALAIHLQLYVSDYSA 92 (100)
Q Consensus 75 ~vA~lAi~LGm~dEA~~~ 92 (100)
..+.+-.++|.+++|.+.
T Consensus 123 ~lg~~~~~~g~~~~A~~~ 140 (217)
T 2pl2_A 123 QRGLVYALLGERDKAEAS 140 (217)
T ss_dssp HHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHcCChHHHHHH
Confidence 356666666666666543
No 15
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=72.11 E-value=10 Score=21.02 Aligned_cols=67 Identities=13% Similarity=0.031 Sum_probs=41.6
Q ss_pred HhhcCCHHHHHHHhHhHH---------HHHHHHHHhhcccch-HHHHHHHHHhhC-ch-----HHHHHHHHHHHh-cchh
Q psy14933 25 YLNTGDLDQAFKSIAFIT---------RLDVACICLGNMRDI-QGIWTLRYAQAE-PE-----LEARVAALAIHL-QLYV 87 (100)
Q Consensus 25 ~Lt~GnmD~Afkaik~Ik---------RlDVA~vCLG~m~~a-r~A~alR~A~~e-~e-----~ea~vA~lAi~L-Gm~d 87 (100)
+...|+.++|....+..- ....|.+ +-++|+- .+...++++.+. |+ .-..++.+-.++ |.++
T Consensus 16 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~-~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 94 (112)
T 2kck_A 16 QYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKA-LYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEV 94 (112)
T ss_dssp HHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTTCSSCSH
T ss_pred HHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHH-HHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHhCCHH
Confidence 567899999988776433 3333433 3334443 444566666643 33 224578888889 9999
Q ss_pred hhhhh
Q psy14933 88 SDYSA 92 (100)
Q Consensus 88 EA~~~ 92 (100)
+|.+.
T Consensus 95 ~A~~~ 99 (112)
T 2kck_A 95 EAEIA 99 (112)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99875
No 16
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=71.12 E-value=21 Score=27.66 Aligned_cols=77 Identities=6% Similarity=-0.010 Sum_probs=42.8
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHhHhHHHH-------------HHH----HHHhhcccchHHHHHHHHHhhCc-h---HHH
Q psy14933 16 RSAVINFSYYLNTGDLDQAFKSIAFITRL-------------DVA----CICLGNMRDIQGIWTLRYAQAEP-E---LEA 74 (100)
Q Consensus 16 r~All~Fs~~Lt~GnmD~Afkaik~IkRl-------------DVA----~vCLG~m~~ar~A~alR~A~~e~-e---~ea 74 (100)
.--++--..+|..|+.|.|-+-++.+++. .++ .+..|.=+...+-....+..+.+ + ...
T Consensus 137 ea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~l 216 (310)
T 3mv2_B 137 ELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLG 216 (310)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHH
Confidence 33345566677777777777777655422 222 12222111223344556665553 3 334
Q ss_pred HHHHHHHHhcchhhhhhhc
Q psy14933 75 RVAALAIHLQLYVSDYSAA 93 (100)
Q Consensus 75 ~vA~lAi~LGm~dEA~~~a 93 (100)
.+. +.+++|.++||+++-
T Consensus 217 Lln-~~~~~g~~~eAe~~L 234 (310)
T 3mv2_B 217 LLN-LHLQQRNIAEAQGIV 234 (310)
T ss_dssp HHH-HHHHHTCHHHHHHHH
T ss_pred HHH-HHHHcCCHHHHHHHH
Confidence 455 788999999998863
No 17
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=71.10 E-value=12 Score=21.15 Aligned_cols=67 Identities=16% Similarity=0.087 Sum_probs=35.3
Q ss_pred HhhcCCHHHHHHHhHhHH---------HHHHHHHHhhcccch-HHHHHHHHHhhC-c---hHHHHHHHHHHHhcchhhhh
Q psy14933 25 YLNTGDLDQAFKSIAFIT---------RLDVACICLGNMRDI-QGIWTLRYAQAE-P---ELEARVAALAIHLQLYVSDY 90 (100)
Q Consensus 25 ~Lt~GnmD~Afkaik~Ik---------RlDVA~vCLG~m~~a-r~A~alR~A~~e-~---e~ea~vA~lAi~LGm~dEA~ 90 (100)
+...|+.++|.+..+... ....+.+ +..+|+. .+...++++.+. | +.-..++.+..+.|.+++|.
T Consensus 45 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 123 (136)
T 2fo7_A 45 YYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNA-YYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAI 123 (136)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHH-HHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHH
Confidence 445677777776665433 2233333 3334433 333445555432 2 22334666677777777776
Q ss_pred hh
Q psy14933 91 SA 92 (100)
Q Consensus 91 ~~ 92 (100)
+.
T Consensus 124 ~~ 125 (136)
T 2fo7_A 124 EY 125 (136)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 18
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=70.89 E-value=15 Score=23.54 Aligned_cols=69 Identities=17% Similarity=0.120 Sum_probs=40.6
Q ss_pred HHhhcCCHHHHHHHhHhHHHHH--------HHHHHhh-cccchHHHHHHHHHhh-Cch-HH--HHHHHHHHHhcchhhhh
Q psy14933 24 YYLNTGDLDQAFKSIAFITRLD--------VACICLG-NMRDIQGIWTLRYAQA-EPE-LE--ARVAALAIHLQLYVSDY 90 (100)
Q Consensus 24 ~~Lt~GnmD~Afkaik~IkRlD--------VA~vCLG-~m~~ar~A~alR~A~~-e~e-~e--a~vA~lAi~LGm~dEA~ 90 (100)
.++..|+.++|.+..+.+-+++ .+.+++. .-+...+...++++.+ +|+ .+ -.++.+-.++|.+++|+
T Consensus 49 ~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~ 128 (176)
T 2r5s_A 49 CLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEAL 128 (176)
T ss_dssp HHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHH
Confidence 3567888888888776543221 1222222 2233334566777664 342 23 34778888889999887
Q ss_pred hh
Q psy14933 91 SA 92 (100)
Q Consensus 91 ~~ 92 (100)
+.
T Consensus 129 ~~ 130 (176)
T 2r5s_A 129 EL 130 (176)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 19
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=70.47 E-value=18 Score=25.62 Aligned_cols=68 Identities=13% Similarity=0.103 Sum_probs=32.5
Q ss_pred HHhhcCCHHHHHHHhHhHH---------HHHHHHHHhhcccch-HHHHHHHHHhh-Cch-H--HHHHHHHHHHhcchhhh
Q psy14933 24 YYLNTGDLDQAFKSIAFIT---------RLDVACICLGNMRDI-QGIWTLRYAQA-EPE-L--EARVAALAIHLQLYVSD 89 (100)
Q Consensus 24 ~~Lt~GnmD~Afkaik~Ik---------RlDVA~vCLG~m~~a-r~A~alR~A~~-e~e-~--ea~vA~lAi~LGm~dEA 89 (100)
.++..|+.++|....+..- ....+.++. +.|+. .+...++++.+ +|+ . -..++.+-.+.|.+++|
T Consensus 42 ~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 120 (388)
T 1w3b_A 42 IHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYK-ERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGA 120 (388)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHH-HCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHH
Confidence 4455666666655443222 222232222 23332 23344555542 332 1 23466666777777777
Q ss_pred hhh
Q psy14933 90 YSA 92 (100)
Q Consensus 90 ~~~ 92 (100)
.+.
T Consensus 121 ~~~ 123 (388)
T 1w3b_A 121 VQA 123 (388)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 20
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=69.82 E-value=18 Score=22.73 Aligned_cols=15 Identities=27% Similarity=0.552 Sum_probs=7.6
Q ss_pred HhhcCCHHHHHHHhH
Q psy14933 25 YLNTGDLDQAFKSIA 39 (100)
Q Consensus 25 ~Lt~GnmD~Afkaik 39 (100)
|...|+.++|....+
T Consensus 49 ~~~~~~~~~a~~~~~ 63 (184)
T 3vtx_A 49 YMDIGLPNDAIESLK 63 (184)
T ss_dssp HHHTTCHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHH
Confidence 344555555555444
No 21
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=68.34 E-value=22 Score=23.19 Aligned_cols=16 Identities=0% Similarity=0.110 Sum_probs=8.1
Q ss_pred HHHHHHHhcchhhhhh
Q psy14933 76 VAALAIHLQLYVSDYS 91 (100)
Q Consensus 76 vA~lAi~LGm~dEA~~ 91 (100)
++.+..++|.+++|.+
T Consensus 147 la~~~~~~g~~~~A~~ 162 (252)
T 2ho1_A 147 LGLVSLQMKKPAQAKE 162 (252)
T ss_dssp HHHHHHHTTCHHHHHH
T ss_pred HHHHHHHcCCHHHHHH
Confidence 4444455555555544
No 22
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=67.84 E-value=18 Score=23.28 Aligned_cols=19 Identities=21% Similarity=0.249 Sum_probs=13.2
Q ss_pred HHhhcCCHHHHHHHhHhHH
Q psy14933 24 YYLNTGDLDQAFKSIAFIT 42 (100)
Q Consensus 24 ~~Lt~GnmD~Afkaik~Ik 42 (100)
.|...|+.++|.+..+..-
T Consensus 88 ~~~~~~~~~~A~~~~~~a~ 106 (258)
T 3uq3_A 88 AYHKLGDLKKTIEYYQKSL 106 (258)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHH
Confidence 4567888888887665443
No 23
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=67.71 E-value=21 Score=22.83 Aligned_cols=16 Identities=0% Similarity=-0.265 Sum_probs=8.9
Q ss_pred HHHHHHHhcchhhhhh
Q psy14933 76 VAALAIHLQLYVSDYS 91 (100)
Q Consensus 76 vA~lAi~LGm~dEA~~ 91 (100)
++.+...+|.+++|.+
T Consensus 199 la~~~~~~~~~~~A~~ 214 (243)
T 2q7f_A 199 AGVTYAYKENREKALE 214 (243)
T ss_dssp HHHHHHHTTCTTHHHH
T ss_pred HHHHHHHccCHHHHHH
Confidence 4555555555555554
No 24
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=66.28 E-value=15 Score=20.64 Aligned_cols=69 Identities=16% Similarity=0.056 Sum_probs=42.7
Q ss_pred HHhhcCCHHHHHHHhHhHH---------HHHHHHHHhhcccc-hHHHHHHHHHhhC-c---hHHHHHHHHHHHhcchhhh
Q psy14933 24 YYLNTGDLDQAFKSIAFIT---------RLDVACICLGNMRD-IQGIWTLRYAQAE-P---ELEARVAALAIHLQLYVSD 89 (100)
Q Consensus 24 ~~Lt~GnmD~Afkaik~Ik---------RlDVA~vCLG~m~~-ar~A~alR~A~~e-~---e~ea~vA~lAi~LGm~dEA 89 (100)
.+...|+.++|.+..+..- ...++.++.. .|+ ..+...++++.+. | ..-..++.+..+.|.+++|
T Consensus 10 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 88 (136)
T 2fo7_A 10 AYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK-QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEA 88 (136)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHH
T ss_pred HHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHH-hcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHHHH
Confidence 4567899999988776432 3445554443 343 3444556666532 3 2234577788889999999
Q ss_pred hhhc
Q psy14933 90 YSAA 93 (100)
Q Consensus 90 ~~~a 93 (100)
.+..
T Consensus 89 ~~~~ 92 (136)
T 2fo7_A 89 IEYY 92 (136)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8754
No 25
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=66.10 E-value=29 Score=23.84 Aligned_cols=19 Identities=11% Similarity=-0.200 Sum_probs=10.8
Q ss_pred HHHHHHHHhcchhhhhhhc
Q psy14933 75 RVAALAIHLQLYVSDYSAA 93 (100)
Q Consensus 75 ~vA~lAi~LGm~dEA~~~a 93 (100)
.++.+-..+|.+++|..+.
T Consensus 335 ~l~~~~~~~g~~~~A~~~~ 353 (368)
T 1fch_A 335 TLRLALSMLGQSDAYGAAD 353 (368)
T ss_dssp HHHHHHHHHTCGGGHHHHH
T ss_pred HHHHHHHHhCChHhHHHhH
Confidence 3555555666666665543
No 26
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=65.68 E-value=29 Score=24.16 Aligned_cols=68 Identities=13% Similarity=0.145 Sum_probs=42.7
Q ss_pred HHhhcCCHHHHHHHhHhHH---------HHHHHHHHhhcccch-HHHHHHHHHhh-Cch---HHHHHHHHHHHhcchhhh
Q psy14933 24 YYLNTGDLDQAFKSIAFIT---------RLDVACICLGNMRDI-QGIWTLRYAQA-EPE---LEARVAALAIHLQLYVSD 89 (100)
Q Consensus 24 ~~Lt~GnmD~Afkaik~Ik---------RlDVA~vCLG~m~~a-r~A~alR~A~~-e~e---~ea~vA~lAi~LGm~dEA 89 (100)
.|...|+.++|.+..+..- ...++.++. ++|+. .+...++++.+ .|+ .-..++.+-.++|.+++|
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLA-NGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 4566799999988876433 333444333 34443 44455666654 342 234588888999999999
Q ss_pred hhh
Q psy14933 90 YSA 92 (100)
Q Consensus 90 ~~~ 92 (100)
.+.
T Consensus 301 ~~~ 303 (365)
T 4eqf_A 301 VSN 303 (365)
T ss_dssp HHH
T ss_pred HHH
Confidence 765
No 27
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=65.62 E-value=34 Score=24.38 Aligned_cols=77 Identities=12% Similarity=-0.043 Sum_probs=46.0
Q ss_pred HHHHHHHhhcCCHHHHHHHhHhHH------HHHHHHHHhhcccchHHHHHHHHHhh---Cch-HH--HHHHHHHHHhcch
Q psy14933 19 VINFSYYLNTGDLDQAFKSIAFIT------RLDVACICLGNMRDIQGIWTLRYAQA---EPE-LE--ARVAALAIHLQLY 86 (100)
Q Consensus 19 ll~Fs~~Lt~GnmD~Afkaik~Ik------RlDVA~vCLG~m~~ar~A~alR~A~~---e~e-~e--a~vA~lAi~LGm~ 86 (100)
++-.--|+..|+.|+|...++... ..-+|....+.=....+...+++... +|+ .+ -..|.+..+.|.+
T Consensus 38 ~~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~ 117 (291)
T 3mkr_A 38 VFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNP 117 (291)
T ss_dssp HHHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCH
Confidence 444567888888888888776544 33445554443223344455665432 242 23 3466777888888
Q ss_pred hhhhhhcCC
Q psy14933 87 VSDYSAADF 95 (100)
Q Consensus 87 dEA~~~a~~ 95 (100)
++|.+.-+-
T Consensus 118 ~~Al~~l~~ 126 (291)
T 3mkr_A 118 DAALRTLHQ 126 (291)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHhC
Confidence 888876544
No 28
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=65.39 E-value=20 Score=21.58 Aligned_cols=19 Identities=5% Similarity=-0.151 Sum_probs=11.2
Q ss_pred HHHHHHHHHhcchhhhhhh
Q psy14933 74 ARVAALAIHLQLYVSDYSA 92 (100)
Q Consensus 74 a~vA~lAi~LGm~dEA~~~ 92 (100)
..++.+...+|.+++|.+.
T Consensus 148 ~~la~~~~~~~~~~~A~~~ 166 (186)
T 3as5_A 148 RAIAFSYEQMGRHEEALPH 166 (186)
T ss_dssp HHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHH
Confidence 3355666666666666553
No 29
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=65.11 E-value=20 Score=21.55 Aligned_cols=67 Identities=13% Similarity=-0.010 Sum_probs=31.9
Q ss_pred HhhcCCHHHHHHHhHhHH---------HHHHHHHHhhcccch-HHHHHHHHHhhC-c---hHHHHHHHHHHHhcchhhhh
Q psy14933 25 YLNTGDLDQAFKSIAFIT---------RLDVACICLGNMRDI-QGIWTLRYAQAE-P---ELEARVAALAIHLQLYVSDY 90 (100)
Q Consensus 25 ~Lt~GnmD~Afkaik~Ik---------RlDVA~vCLG~m~~a-r~A~alR~A~~e-~---e~ea~vA~lAi~LGm~dEA~ 90 (100)
+...|+.++|.+..+..- ....|.+ +-++|+- .+...++++.+. | +.--..|.+-.++|.+++|.
T Consensus 23 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~-~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~ 101 (166)
T 1a17_A 23 YFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLA-YLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAAL 101 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhccHHHHH
Confidence 445677777766555322 2223332 2333332 333344444422 2 22234566666666666665
Q ss_pred hh
Q psy14933 91 SA 92 (100)
Q Consensus 91 ~~ 92 (100)
+.
T Consensus 102 ~~ 103 (166)
T 1a17_A 102 RD 103 (166)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 30
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=65.05 E-value=26 Score=25.00 Aligned_cols=17 Identities=12% Similarity=0.225 Sum_probs=10.8
Q ss_pred HHHhhcCCHHHHHHHhH
Q psy14933 23 SYYLNTGDLDQAFKSIA 39 (100)
Q Consensus 23 s~~Lt~GnmD~Afkaik 39 (100)
.|+...|+.|+|.+.++
T Consensus 73 ~~~~~~~~~~~A~~~l~ 89 (291)
T 3mkr_A 73 EYLASHSRRDAIVAELD 89 (291)
T ss_dssp HHHHCSTTHHHHHHHHH
T ss_pred HHHcCCCcHHHHHHHHH
Confidence 35555666777777665
No 31
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=64.80 E-value=23 Score=22.15 Aligned_cols=18 Identities=6% Similarity=-0.033 Sum_probs=12.8
Q ss_pred HHHHHHHHhcchhhhhhh
Q psy14933 75 RVAALAIHLQLYVSDYSA 92 (100)
Q Consensus 75 ~vA~lAi~LGm~dEA~~~ 92 (100)
.++.+...+|.+++|.+.
T Consensus 71 ~l~~~~~~~g~~~~A~~~ 88 (203)
T 3gw4_A 71 QVGMVERMAGNWDAARRC 88 (203)
T ss_dssp HHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHH
Confidence 366777778888777654
No 32
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=64.71 E-value=17 Score=20.57 Aligned_cols=70 Identities=10% Similarity=0.048 Sum_probs=43.3
Q ss_pred HHHhhcCCHHHHHHHhHhHH---------HHHHHHHHhhcccch-HHHHHHHHHhh-Cc---hHHHHHHHHHHHhcchhh
Q psy14933 23 SYYLNTGDLDQAFKSIAFIT---------RLDVACICLGNMRDI-QGIWTLRYAQA-EP---ELEARVAALAIHLQLYVS 88 (100)
Q Consensus 23 s~~Lt~GnmD~Afkaik~Ik---------RlDVA~vCLG~m~~a-r~A~alR~A~~-e~---e~ea~vA~lAi~LGm~dE 88 (100)
..+...|+.++|....+..- ....|.++ .++|+. .+...++++.+ .| +.-..++.+..++|.+++
T Consensus 20 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (131)
T 2vyi_A 20 NEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAY-SKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVE 98 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH-HHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHHhCCHHH
Confidence 34567899999988777443 33444443 344443 44445555553 23 233557888889999999
Q ss_pred hhhhc
Q psy14933 89 DYSAA 93 (100)
Q Consensus 89 A~~~a 93 (100)
|.+.-
T Consensus 99 A~~~~ 103 (131)
T 2vyi_A 99 AVAYY 103 (131)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87653
No 33
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=64.64 E-value=23 Score=22.13 Aligned_cols=68 Identities=10% Similarity=0.054 Sum_probs=43.4
Q ss_pred HHhhcCCHHHHHHHhHhHH---------HHHHHHHHhhcccch-HHHHHHHHHhh-Cc---hHHHHHHHHHHHhcchhhh
Q psy14933 24 YYLNTGDLDQAFKSIAFIT---------RLDVACICLGNMRDI-QGIWTLRYAQA-EP---ELEARVAALAIHLQLYVSD 89 (100)
Q Consensus 24 ~~Lt~GnmD~Afkaik~Ik---------RlDVA~vCLG~m~~a-r~A~alR~A~~-e~---e~ea~vA~lAi~LGm~dEA 89 (100)
.++..|+.++|.+..+..- ....+. |+-++|+- .+...+++|.+ +| +.--.++.+-.++|.+++|
T Consensus 20 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~-~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A 98 (164)
T 3sz7_A 20 AAMARKEYSKAIDLYTQALSIAPANPIYLSNRAA-AYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGA 98 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHH-HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHH-HHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHH
Confidence 4667899999988776433 344444 34445554 34445666653 33 2335588888999999999
Q ss_pred hhh
Q psy14933 90 YSA 92 (100)
Q Consensus 90 ~~~ 92 (100)
.+.
T Consensus 99 ~~~ 101 (164)
T 3sz7_A 99 KEA 101 (164)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 34
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=63.55 E-value=20 Score=25.56 Aligned_cols=16 Identities=25% Similarity=0.079 Sum_probs=9.3
Q ss_pred HHHHHHhcchhhhhhh
Q psy14933 77 AALAIHLQLYVSDYSA 92 (100)
Q Consensus 77 A~lAi~LGm~dEA~~~ 92 (100)
+....+.|.+++|.++
T Consensus 264 ~~~~~~~g~~~~A~~~ 279 (450)
T 2y4t_A 264 AEELIRDGRYTDATSK 279 (450)
T ss_dssp HHHHHHHTCHHHHHHH
T ss_pred HHHHHHcCCHHHHHHH
Confidence 5555666666666543
No 35
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=63.43 E-value=26 Score=22.28 Aligned_cols=81 Identities=12% Similarity=0.203 Sum_probs=52.7
Q ss_pred cCHHHHHHHHHHHH-HhhcCCHHHHHHHhHhHH---------HHHHHHHHhhcccchH-HHHHHHHHhh-Cc---hHHHH
Q psy14933 11 CDEVTRSAVINFSY-YLNTGDLDQAFKSIAFIT---------RLDVACICLGNMRDIQ-GIWTLRYAQA-EP---ELEAR 75 (100)
Q Consensus 11 ~D~~tr~All~Fs~-~Lt~GnmD~Afkaik~Ik---------RlDVA~vCLG~m~~ar-~A~alR~A~~-e~---e~ea~ 75 (100)
.++....++.+... ++..|+.++|....+.+- ..-.+. |+-.+|+.. +....++|.. +| +.--.
T Consensus 16 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~-~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 94 (148)
T 2vgx_A 16 ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGA-CRQAMGQYDLAIHSYSYGAVMDIXEPRFPFH 94 (148)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH-HHHHTTCHHHHHHHHHHHHHHSTTCTHHHHH
T ss_pred CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHH-HHHHHhhHHHHHHHHHHHHhcCCCCchHHHH
Confidence 35556666665543 457899999998887543 333444 444566553 4456666653 33 33455
Q ss_pred HHHHHHHhcchhhhhhh
Q psy14933 76 VAALAIHLQLYVSDYSA 92 (100)
Q Consensus 76 vA~lAi~LGm~dEA~~~ 92 (100)
+|.+-.++|.+++|++.
T Consensus 95 lg~~~~~~g~~~~A~~~ 111 (148)
T 2vgx_A 95 AAECLLQXGELAEAESG 111 (148)
T ss_dssp HHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHH
Confidence 88899999999999864
No 36
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=63.14 E-value=27 Score=22.35 Aligned_cols=14 Identities=14% Similarity=0.247 Sum_probs=6.8
Q ss_pred hhcCCHHHHHHHhH
Q psy14933 26 LNTGDLDQAFKSIA 39 (100)
Q Consensus 26 Lt~GnmD~Afkaik 39 (100)
...|+.++|.+..+
T Consensus 68 ~~~~~~~~A~~~~~ 81 (243)
T 2q7f_A 68 SSVNELERALAFYD 81 (243)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HHcCCHHHHHHHHH
Confidence 34555555554443
No 37
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=63.04 E-value=31 Score=23.04 Aligned_cols=67 Identities=15% Similarity=0.076 Sum_probs=34.4
Q ss_pred HhhcCCHHHHHHHhHhHH---------HHHHHHHHhhcccch-HHHHHHHHHhhC-ch---HHHHHHHHHHHhcchhhhh
Q psy14933 25 YLNTGDLDQAFKSIAFIT---------RLDVACICLGNMRDI-QGIWTLRYAQAE-PE---LEARVAALAIHLQLYVSDY 90 (100)
Q Consensus 25 ~Lt~GnmD~Afkaik~Ik---------RlDVA~vCLG~m~~a-r~A~alR~A~~e-~e---~ea~vA~lAi~LGm~dEA~ 90 (100)
+...|+.++|.+..+..- ..-++.++ -++|+. .+...++++.+. |+ .-..++.+...+|.+++|+
T Consensus 135 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~-~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~ 213 (330)
T 3hym_B 135 FAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEY-GLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAE 213 (330)
T ss_dssp HHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHH-HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHH-HHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHH
Confidence 445677777766655332 22233322 233333 344455665543 21 2234666777777777776
Q ss_pred hh
Q psy14933 91 SA 92 (100)
Q Consensus 91 ~~ 92 (100)
+.
T Consensus 214 ~~ 215 (330)
T 3hym_B 214 KW 215 (330)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 38
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=62.89 E-value=31 Score=23.00 Aligned_cols=16 Identities=6% Similarity=-0.224 Sum_probs=3.3
Q ss_pred HHHHHHHhcchhhhhh
Q psy14933 76 VAALAIHLQLYVSDYS 91 (100)
Q Consensus 76 vA~lAi~LGm~dEA~~ 91 (100)
++.+-.++|.+++|.+
T Consensus 191 la~~~~~~g~~~~A~~ 206 (217)
T 2pl2_A 191 YASALLLKGKAEEAAR 206 (217)
T ss_dssp HHHHHTC---------
T ss_pred HHHHHHHccCHHHHHH
Confidence 4444445555555544
No 39
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=62.59 E-value=32 Score=23.00 Aligned_cols=68 Identities=12% Similarity=0.021 Sum_probs=42.0
Q ss_pred HHhhcCCHHHHHHHhHhHH---------HHHHHHHHhhcccch-HHHHHHHHHhhC----------c---hHHHHHHHHH
Q psy14933 24 YYLNTGDLDQAFKSIAFIT---------RLDVACICLGNMRDI-QGIWTLRYAQAE----------P---ELEARVAALA 80 (100)
Q Consensus 24 ~~Lt~GnmD~Afkaik~Ik---------RlDVA~vCLG~m~~a-r~A~alR~A~~e----------~---e~ea~vA~lA 80 (100)
.|...|+.++|.+..+..- ....+.++. .+|+. .+...++++.+. | +.-..++.+.
T Consensus 168 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~ 246 (330)
T 3hym_B 168 EYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAF-QNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVC 246 (330)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHH-HcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHH
Confidence 3566899999888877543 334444443 33443 344455555432 1 2345678888
Q ss_pred HHhcchhhhhhh
Q psy14933 81 IHLQLYVSDYSA 92 (100)
Q Consensus 81 i~LGm~dEA~~~ 92 (100)
.++|.+++|.+.
T Consensus 247 ~~~g~~~~A~~~ 258 (330)
T 3hym_B 247 RKLKKYAEALDY 258 (330)
T ss_dssp HHTTCHHHHHHH
T ss_pred HHhcCHHHHHHH
Confidence 899999998764
No 40
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=62.08 E-value=25 Score=21.75 Aligned_cols=81 Identities=16% Similarity=0.204 Sum_probs=50.4
Q ss_pred cCHHHHHHHHHH-HHHhhcCCHHHHHHHhHh-HH--------HHHHHHHHhhcccchHH-HHHHHHHhh-Cch-HH--HH
Q psy14933 11 CDEVTRSAVINF-SYYLNTGDLDQAFKSIAF-IT--------RLDVACICLGNMRDIQG-IWTLRYAQA-EPE-LE--AR 75 (100)
Q Consensus 11 ~D~~tr~All~F-s~~Lt~GnmD~Afkaik~-Ik--------RlDVA~vCLG~m~~ar~-A~alR~A~~-e~e-~e--a~ 75 (100)
.||..-++.-+- +-+...|+.++|.+..+- |+ ....| .|+-++|+... ....++|.+ +|. .+ -.
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~-~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~ 86 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRA-ACLTKLMEFQRALDDCDTCIRLDSKFIKGYIR 86 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHh-hHHHhhccHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 344444443332 346789999999888763 44 33333 45556666543 344666654 342 23 45
Q ss_pred HHHHHHHhcchhhhhhh
Q psy14933 76 VAALAIHLQLYVSDYSA 92 (100)
Q Consensus 76 vA~lAi~LGm~dEA~~~ 92 (100)
.|.+-.++|.+++|++.
T Consensus 87 lg~~~~~~~~~~~A~~~ 103 (126)
T 4gco_A 87 KAACLVAMREWSKAQRA 103 (126)
T ss_dssp HHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHH
Confidence 88899999999999864
No 41
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=61.93 E-value=31 Score=22.66 Aligned_cols=17 Identities=0% Similarity=-0.095 Sum_probs=8.5
Q ss_pred HHHHHHHhcchhhhhhh
Q psy14933 76 VAALAIHLQLYVSDYSA 92 (100)
Q Consensus 76 vA~lAi~LGm~dEA~~~ 92 (100)
+|.+-..+|.+++|.+.
T Consensus 114 l~~~~~~~~~~~~A~~~ 130 (272)
T 3u4t_A 114 IGSYFYNKGNFPLAIQY 130 (272)
T ss_dssp HHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHccCHHHHHHH
Confidence 44445555555555443
No 42
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=61.09 E-value=40 Score=23.70 Aligned_cols=68 Identities=12% Similarity=0.046 Sum_probs=44.8
Q ss_pred HHhhcCCHHHHHHHhHhHH---------HHHHHHHHhhcccch-HHHHHHHHHhhC-ch---HHHHHHHHHHHhcchhhh
Q psy14933 24 YYLNTGDLDQAFKSIAFIT---------RLDVACICLGNMRDI-QGIWTLRYAQAE-PE---LEARVAALAIHLQLYVSD 89 (100)
Q Consensus 24 ~~Lt~GnmD~Afkaik~Ik---------RlDVA~vCLG~m~~a-r~A~alR~A~~e-~e---~ea~vA~lAi~LGm~dEA 89 (100)
.+...|+.++|.+..+..- ....|. |+-++|+- .+...+++|.+- |+ .--.+|.+-.++|.+++|
T Consensus 13 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~-~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A 91 (281)
T 2c2l_A 13 RLFVGRKYPEAAACYGRAITRNPLVAVYYTNRAL-CYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEA 91 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHH-HHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHH-HHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 4567899999988776433 334443 44455555 444567777654 42 234578888999999999
Q ss_pred hhh
Q psy14933 90 YSA 92 (100)
Q Consensus 90 ~~~ 92 (100)
.+.
T Consensus 92 ~~~ 94 (281)
T 2c2l_A 92 IAN 94 (281)
T ss_dssp HHH
T ss_pred HHH
Confidence 864
No 43
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=60.99 E-value=29 Score=22.08 Aligned_cols=67 Identities=12% Similarity=0.047 Sum_probs=38.5
Q ss_pred HhhcCCHHHHHHHhHhHH---------HHHHHHHHhhcccch-HHHHHHHHHhhC-c-------------------hHHH
Q psy14933 25 YLNTGDLDQAFKSIAFIT---------RLDVACICLGNMRDI-QGIWTLRYAQAE-P-------------------ELEA 74 (100)
Q Consensus 25 ~Lt~GnmD~Afkaik~Ik---------RlDVA~vCLG~m~~a-r~A~alR~A~~e-~-------------------e~ea 74 (100)
|...|+.++|.+..+..- ....|.++ -++|+- .+...++++.+. | +.--
T Consensus 47 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~-~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (213)
T 1hh8_A 47 YTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLY-YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLY 125 (213)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHH-HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHH
Confidence 456788888877665332 33344333 334443 333455666542 1 2234
Q ss_pred HHHHHHHHhcchhhhhhh
Q psy14933 75 RVAALAIHLQLYVSDYSA 92 (100)
Q Consensus 75 ~vA~lAi~LGm~dEA~~~ 92 (100)
.+|.+..++|.+++|.+.
T Consensus 126 ~l~~~~~~~g~~~~A~~~ 143 (213)
T 1hh8_A 126 NIAFMYAKKEEWKKAEEQ 143 (213)
T ss_dssp HHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHH
Confidence 577888888888888654
No 44
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=60.82 E-value=32 Score=22.46 Aligned_cols=68 Identities=6% Similarity=-0.157 Sum_probs=38.2
Q ss_pred HHhhcCCHHHHHHHhHhHH---------HHHHHHHHhhcccch-HHHHHHHHHhh-Cc---hHHHHHHHHHHHhcchhhh
Q psy14933 24 YYLNTGDLDQAFKSIAFIT---------RLDVACICLGNMRDI-QGIWTLRYAQA-EP---ELEARVAALAIHLQLYVSD 89 (100)
Q Consensus 24 ~~Lt~GnmD~Afkaik~Ik---------RlDVA~vCLG~m~~a-r~A~alR~A~~-e~---e~ea~vA~lAi~LGm~dEA 89 (100)
.|...|+.++|.+..+..- ...+|.++ .++|+. .+...++++.+ .| +.-..++.+-.++|.+++|
T Consensus 52 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~-~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A 130 (275)
T 1xnf_A 52 LYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYL-TQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLA 130 (275)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHH-HHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHH
Confidence 4556788888877665332 33344433 333433 34445566654 23 2234467777778888877
Q ss_pred hhh
Q psy14933 90 YSA 92 (100)
Q Consensus 90 ~~~ 92 (100)
.+.
T Consensus 131 ~~~ 133 (275)
T 1xnf_A 131 QDD 133 (275)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 45
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=60.70 E-value=23 Score=20.89 Aligned_cols=68 Identities=21% Similarity=0.248 Sum_probs=43.3
Q ss_pred HHhhcCCHHHHHHHhHhH-H--------HHHHHHHHhhcccch-HHHHHHHHHhh-Cch---HHHHHHHHHHHhcchhhh
Q psy14933 24 YYLNTGDLDQAFKSIAFI-T--------RLDVACICLGNMRDI-QGIWTLRYAQA-EPE---LEARVAALAIHLQLYVSD 89 (100)
Q Consensus 24 ~~Lt~GnmD~Afkaik~I-k--------RlDVA~vCLG~m~~a-r~A~alR~A~~-e~e---~ea~vA~lAi~LGm~dEA 89 (100)
.++..|+.++|....+.. + ....|. |+-++|+- .+...++++.+ +|. .--..|.+-.++|.+++|
T Consensus 13 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~-~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A 91 (126)
T 3upv_A 13 EYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAA-ALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASA 91 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH-HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHH-HHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhCHHHH
Confidence 456789999998877633 2 333443 44455554 34445666654 342 234588888999999999
Q ss_pred hhh
Q psy14933 90 YSA 92 (100)
Q Consensus 90 ~~~ 92 (100)
.+.
T Consensus 92 ~~~ 94 (126)
T 3upv_A 92 LET 94 (126)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 46
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=59.06 E-value=53 Score=24.46 Aligned_cols=17 Identities=24% Similarity=0.471 Sum_probs=10.2
Q ss_pred HHHhhcCCHHHHHHHhH
Q psy14933 23 SYYLNTGDLDQAFKSIA 39 (100)
Q Consensus 23 s~~Lt~GnmD~Afkaik 39 (100)
..|...|++++|.+..+
T Consensus 381 ~~~~~~g~~~~A~~~~~ 397 (597)
T 2xpi_A 381 IYYLCVNKISEARRYFS 397 (597)
T ss_dssp HHHHHTTCHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHH
Confidence 34555677777666555
No 47
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=57.40 E-value=40 Score=22.47 Aligned_cols=20 Identities=5% Similarity=-0.376 Sum_probs=12.7
Q ss_pred HHHHHHHHhcchhhhhhhcC
Q psy14933 75 RVAALAIHLQLYVSDYSAAD 94 (100)
Q Consensus 75 ~vA~lAi~LGm~dEA~~~a~ 94 (100)
.++.+-..+|.+++|..+..
T Consensus 291 ~l~~~~~~~g~~~~A~~~~~ 310 (327)
T 3cv0_A 291 FFRMLLNVMNRPDLVELTYA 310 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHTT
T ss_pred HHHHHHHhcCCHHHHHHHHH
Confidence 35666667777777766543
No 48
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=56.16 E-value=34 Score=21.36 Aligned_cols=16 Identities=0% Similarity=-0.184 Sum_probs=8.5
Q ss_pred HHHHHHHhcchhhhhh
Q psy14933 76 VAALAIHLQLYVSDYS 91 (100)
Q Consensus 76 vA~lAi~LGm~dEA~~ 91 (100)
++.+..++|.+++|.+
T Consensus 119 l~~~~~~~~~~~~A~~ 134 (225)
T 2vq2_A 119 KGICSAKQGQFGLAEA 134 (225)
T ss_dssp HHHHHHHTTCHHHHHH
T ss_pred HHHHHHHcCCHHHHHH
Confidence 4445555555555544
No 49
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=55.64 E-value=63 Score=24.79 Aligned_cols=16 Identities=0% Similarity=-0.234 Sum_probs=8.6
Q ss_pred HHHHHHHhcchhhhhh
Q psy14933 76 VAALAIHLQLYVSDYS 91 (100)
Q Consensus 76 vA~lAi~LGm~dEA~~ 91 (100)
+|.+-.++|.+++|.+
T Consensus 97 la~~~~~~g~~~~A~~ 112 (568)
T 2vsy_A 97 LGHALEDAGQAEAAAA 112 (568)
T ss_dssp HHHHHHHTTCHHHHHH
T ss_pred HHHHHHHcCCHHHHHH
Confidence 4555555555555544
No 50
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=55.27 E-value=41 Score=22.05 Aligned_cols=81 Identities=12% Similarity=0.138 Sum_probs=54.0
Q ss_pred cCHHHHHHHHHHHH-HhhcCCHHHHHHHhHhHH---------HHHHHHHHhhcccch-HHHHHHHHHhh-Cc---hHHHH
Q psy14933 11 CDEVTRSAVINFSY-YLNTGDLDQAFKSIAFIT---------RLDVACICLGNMRDI-QGIWTLRYAQA-EP---ELEAR 75 (100)
Q Consensus 11 ~D~~tr~All~Fs~-~Lt~GnmD~Afkaik~Ik---------RlDVA~vCLG~m~~a-r~A~alR~A~~-e~---e~ea~ 75 (100)
.++..-.++.+..+ +...|+.++|....+..- ....+. |+-.+|+- .+....++|.+ +| +.--.
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~-~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAA-IYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH-HHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH-HHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 45666666666654 346899999999887554 334443 44455554 44555777753 34 33456
Q ss_pred HHHHHHHhcchhhhhhh
Q psy14933 76 VAALAIHLQLYVSDYSA 92 (100)
Q Consensus 76 vA~lAi~LGm~dEA~~~ 92 (100)
+|.+-.++|.+++|.+.
T Consensus 110 lg~~~~~lg~~~eA~~~ 126 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKEC 126 (151)
T ss_dssp HHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHH
Confidence 89999999999999874
No 51
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=54.80 E-value=26 Score=19.55 Aligned_cols=69 Identities=16% Similarity=0.066 Sum_probs=43.0
Q ss_pred HHhhcCCHHHHHHHhHhHH---------HHHHHHHHhhcccchH-HHHHHHHHhhC-c---hHHHHHHHHHHHhcchhhh
Q psy14933 24 YYLNTGDLDQAFKSIAFIT---------RLDVACICLGNMRDIQ-GIWTLRYAQAE-P---ELEARVAALAIHLQLYVSD 89 (100)
Q Consensus 24 ~~Lt~GnmD~Afkaik~Ik---------RlDVA~vCLG~m~~ar-~A~alR~A~~e-~---e~ea~vA~lAi~LGm~dEA 89 (100)
.+...|+.++|.+..+..- ...++. |+.+.|+.. +...++++.+. | +.-..++.+-.++|.+++|
T Consensus 18 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~-~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 96 (125)
T 1na0_A 18 AYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGN-AYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEA 96 (125)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH-HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHH-HHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHH
Confidence 4567899999988776443 233443 334455543 44456666532 3 2234578888899999999
Q ss_pred hhhc
Q psy14933 90 YSAA 93 (100)
Q Consensus 90 ~~~a 93 (100)
.+.-
T Consensus 97 ~~~~ 100 (125)
T 1na0_A 97 IEYY 100 (125)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8753
No 52
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=54.49 E-value=64 Score=24.01 Aligned_cols=71 Identities=10% Similarity=-0.116 Sum_probs=45.0
Q ss_pred HHHhhcCCHHHHHHHhHhHH--------HHHHHHHHhhcccch-HHHHHHHHHhhCc---hHHHHHHHHHHHhcchhhhh
Q psy14933 23 SYYLNTGDLDQAFKSIAFIT--------RLDVACICLGNMRDI-QGIWTLRYAQAEP---ELEARVAALAIHLQLYVSDY 90 (100)
Q Consensus 23 s~~Lt~GnmD~Afkaik~Ik--------RlDVA~vCLG~m~~a-r~A~alR~A~~e~---e~ea~vA~lAi~LGm~dEA~ 90 (100)
..++..|+.++|....+.+- ..-++.+|.. .|+. .+...++++...| ..--.++..-...|.+++|.
T Consensus 92 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 170 (597)
T 2xpi_A 92 HDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCC-TGDYARAKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGAL 170 (597)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH-TTCHHHHHHHHHHTCGGGTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHH-cCcHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhHHHHH
Confidence 35677899999988776543 3334554443 3433 4445566663333 23344677788999999999
Q ss_pred hhcC
Q psy14933 91 SAAD 94 (100)
Q Consensus 91 ~~a~ 94 (100)
++-+
T Consensus 171 ~~~~ 174 (597)
T 2xpi_A 171 NLLG 174 (597)
T ss_dssp HHHC
T ss_pred HHHh
Confidence 8765
No 53
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=54.29 E-value=45 Score=22.18 Aligned_cols=68 Identities=12% Similarity=0.032 Sum_probs=39.4
Q ss_pred HHhhcCCHHHHHHHhHhHH---------HHHHHHHHhhcccch-HHHHHHHHHhhC-c---hHHHHHHHHHHHhcchhhh
Q psy14933 24 YYLNTGDLDQAFKSIAFIT---------RLDVACICLGNMRDI-QGIWTLRYAQAE-P---ELEARVAALAIHLQLYVSD 89 (100)
Q Consensus 24 ~~Lt~GnmD~Afkaik~Ik---------RlDVA~vCLG~m~~a-r~A~alR~A~~e-~---e~ea~vA~lAi~LGm~dEA 89 (100)
.+...|+.++|.+..+..- ...++.++. ++|+. .+...++++.+. | +.-..++.+-.++|.+++|
T Consensus 181 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A 259 (327)
T 3cv0_A 181 LYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLA-NGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLA 259 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHH
Confidence 3556788888887776443 333343333 34443 334445555432 3 2234477788888888888
Q ss_pred hhh
Q psy14933 90 YSA 92 (100)
Q Consensus 90 ~~~ 92 (100)
.+.
T Consensus 260 ~~~ 262 (327)
T 3cv0_A 260 AKQ 262 (327)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 54
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=54.26 E-value=31 Score=20.24 Aligned_cols=18 Identities=11% Similarity=0.135 Sum_probs=13.6
Q ss_pred HhhcCCHHHHHHHhHhHH
Q psy14933 25 YLNTGDLDQAFKSIAFIT 42 (100)
Q Consensus 25 ~Lt~GnmD~Afkaik~Ik 42 (100)
|+..|+.++|.+..+..-
T Consensus 17 ~~~~g~~~~A~~~~~~al 34 (100)
T 3ma5_A 17 HLKHDNASRALALFEELV 34 (100)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHH
Confidence 567899999988877443
No 55
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=53.99 E-value=32 Score=20.38 Aligned_cols=30 Identities=10% Similarity=0.081 Sum_probs=18.5
Q ss_pred CHHHHHHHHHHH-HHhhcCCHHHHHHHhHhH
Q psy14933 12 DEVTRSAVINFS-YYLNTGDLDQAFKSIAFI 41 (100)
Q Consensus 12 D~~tr~All~Fs-~~Lt~GnmD~Afkaik~I 41 (100)
|+....+..+.. .|...|+.++|.+..+..
T Consensus 23 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 53 (117)
T 3k9i_A 23 GKDLAECYLGLGSTFRTLGEYRKAEAVLANG 53 (117)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344445555543 356778888888777643
No 56
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=53.51 E-value=56 Score=23.00 Aligned_cols=15 Identities=27% Similarity=0.525 Sum_probs=9.2
Q ss_pred HhhcCCHHHHHHHhH
Q psy14933 25 YLNTGDLDQAFKSIA 39 (100)
Q Consensus 25 ~Lt~GnmD~Afkaik 39 (100)
|...|+.++|.+..+
T Consensus 77 ~~~~g~~~~A~~~~~ 91 (388)
T 1w3b_A 77 YKERGQLQEAIEHYR 91 (388)
T ss_dssp HHHHTCHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHH
Confidence 445667777666554
No 57
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=53.07 E-value=32 Score=24.52 Aligned_cols=77 Identities=12% Similarity=0.022 Sum_probs=46.4
Q ss_pred HHHHHHHHHhhcCCHHHHH-----------HHhHhHH--------HHH------HHHHHhhcccchHHHHHHHHHhhC--
Q psy14933 17 SAVINFSYYLNTGDLDQAF-----------KSIAFIT--------RLD------VACICLGNMRDIQGIWTLRYAQAE-- 69 (100)
Q Consensus 17 ~All~Fs~~Lt~GnmD~Af-----------kaik~Ik--------RlD------VA~vCLG~m~~ar~A~alR~A~~e-- 69 (100)
-.++.|.|++..++++.+- ..++.|+ -+. .+.++...=....+...+++|.+-
T Consensus 55 ~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~ 134 (383)
T 3ulq_A 55 YSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLI 134 (383)
T ss_dssp HHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGG
T ss_pred HHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHh
Confidence 5688999998888877665 5555443 222 344333222233445556776542
Q ss_pred --c--h----HHHHHHHHHHHhcchhhhhhhc
Q psy14933 70 --P--E----LEARVAALAIHLQLYVSDYSAA 93 (100)
Q Consensus 70 --~--e----~ea~vA~lAi~LGm~dEA~~~a 93 (100)
+ . .--.+|.+-.++|.+++|.+..
T Consensus 135 ~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~ 166 (383)
T 3ulq_A 135 FVKDRIEKAEFFFKMSESYYYMKQTYFSMDYA 166 (383)
T ss_dssp GCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 2 1 1234788888899999887653
No 58
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=52.58 E-value=50 Score=22.15 Aligned_cols=70 Identities=17% Similarity=-0.002 Sum_probs=47.2
Q ss_pred HHHhhcCCHHHHHHHhHhHH---------HHHHHHHHhhcccch-HHHHHHHHHhhC-c---hHHHHHHHHHHHhcchhh
Q psy14933 23 SYYLNTGDLDQAFKSIAFIT---------RLDVACICLGNMRDI-QGIWTLRYAQAE-P---ELEARVAALAIHLQLYVS 88 (100)
Q Consensus 23 s~~Lt~GnmD~Afkaik~Ik---------RlDVA~vCLG~m~~a-r~A~alR~A~~e-~---e~ea~vA~lAi~LGm~dE 88 (100)
..+...|+.++|.+..+..- ...++.++ -++|+. .+...++++.+. | +.-..++.+...+|.+++
T Consensus 128 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 206 (359)
T 3ieg_A 128 LDAFDGADYTAAITFLDKILEVCVWDAELRELRAECF-IKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHEL 206 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHH-HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 57788999999998887543 34444433 445554 444556666643 3 334568888999999999
Q ss_pred hhhhc
Q psy14933 89 DYSAA 93 (100)
Q Consensus 89 A~~~a 93 (100)
|.+..
T Consensus 207 A~~~~ 211 (359)
T 3ieg_A 207 SLSEV 211 (359)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98753
No 59
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=52.53 E-value=50 Score=22.15 Aligned_cols=69 Identities=13% Similarity=0.018 Sum_probs=44.5
Q ss_pred HHhhcCCHHHHHHHhHhHH---------HHHHHHHHhhcccch-HHHHHHHHHhh-Cc---hHHHHHHHHHHHhcchhhh
Q psy14933 24 YYLNTGDLDQAFKSIAFIT---------RLDVACICLGNMRDI-QGIWTLRYAQA-EP---ELEARVAALAIHLQLYVSD 89 (100)
Q Consensus 24 ~~Lt~GnmD~Afkaik~Ik---------RlDVA~vCLG~m~~a-r~A~alR~A~~-e~---e~ea~vA~lAi~LGm~dEA 89 (100)
.++..|+.++|....+.+- ....| .|+-++|+. .+...++++.+ .| +.-..++.+..++|.+++|
T Consensus 12 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a-~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 90 (359)
T 3ieg_A 12 KLLAAGQLADALSQFHAAVDGDPDNYIAYYRRA-TVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEA 90 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH-HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHH-HHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHH
Confidence 4677899999998887543 33333 344445554 34455666654 34 2335588888999999999
Q ss_pred hhhc
Q psy14933 90 YSAA 93 (100)
Q Consensus 90 ~~~a 93 (100)
.+.-
T Consensus 91 ~~~~ 94 (359)
T 3ieg_A 91 EDDF 94 (359)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8753
No 60
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=52.23 E-value=45 Score=21.61 Aligned_cols=67 Identities=13% Similarity=-0.090 Sum_probs=32.3
Q ss_pred HhhcCCHHHHHHHhHhHH---------HHHHHHHHhhcccch-HHHHHHHHHhhC-ch---HHHHHHHHHHHhcchhhhh
Q psy14933 25 YLNTGDLDQAFKSIAFIT---------RLDVACICLGNMRDI-QGIWTLRYAQAE-PE---LEARVAALAIHLQLYVSDY 90 (100)
Q Consensus 25 ~Lt~GnmD~Afkaik~Ik---------RlDVA~vCLG~m~~a-r~A~alR~A~~e-~e---~ea~vA~lAi~LGm~dEA~ 90 (100)
+...|+.++|.+..+..- ..-+|.++. .+|+. .+...++++.+. |. .-...+.+...+|.+++|.
T Consensus 151 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~ 229 (252)
T 2ho1_A 151 SLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLY-KEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAA 229 (252)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHH
Confidence 455677777666655332 233333332 23333 333445555432 21 1233555556677777766
Q ss_pred hh
Q psy14933 91 SA 92 (100)
Q Consensus 91 ~~ 92 (100)
++
T Consensus 230 ~~ 231 (252)
T 2ho1_A 230 SY 231 (252)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 61
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=51.88 E-value=55 Score=22.44 Aligned_cols=68 Identities=13% Similarity=0.122 Sum_probs=39.6
Q ss_pred HHhhcCCHHHHHHHhHhHH---------HHHHHHHHhhcccch-HHHHHHHHHhh-Cc---hHHHHHHHHHHHhcchhhh
Q psy14933 24 YYLNTGDLDQAFKSIAFIT---------RLDVACICLGNMRDI-QGIWTLRYAQA-EP---ELEARVAALAIHLQLYVSD 89 (100)
Q Consensus 24 ~~Lt~GnmD~Afkaik~Ik---------RlDVA~vCLG~m~~a-r~A~alR~A~~-e~---e~ea~vA~lAi~LGm~dEA 89 (100)
.|...|+.++|.+..+..- ...++.++. ++|+. .+...++++.+ .| +.-..++.+-.++|.+++|
T Consensus 226 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A 304 (368)
T 1fch_A 226 LFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLA-NGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREA 304 (368)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHH
Confidence 3556788888887766432 333333333 34443 33445555543 23 2334578888888888888
Q ss_pred hhh
Q psy14933 90 YSA 92 (100)
Q Consensus 90 ~~~ 92 (100)
.+.
T Consensus 305 ~~~ 307 (368)
T 1fch_A 305 VEH 307 (368)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 62
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=51.77 E-value=39 Score=20.72 Aligned_cols=83 Identities=16% Similarity=0.162 Sum_probs=52.9
Q ss_pred ccCHHHHHHHHHHHH-HhhcCCHHHHHHHhHhHH---------HHHHHHHHhhcccch-HHHHHHHHHhh-Cc---hHHH
Q psy14933 10 CCDEVTRSAVINFSY-YLNTGDLDQAFKSIAFIT---------RLDVACICLGNMRDI-QGIWTLRYAQA-EP---ELEA 74 (100)
Q Consensus 10 ~~D~~tr~All~Fs~-~Lt~GnmD~Afkaik~Ik---------RlDVA~vCLG~m~~a-r~A~alR~A~~-e~---e~ea 74 (100)
..++....++.+... ++..|+.++|.+..+.+- ....+. |+-.+|+. .+...+++|.+ +| +.--
T Consensus 12 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~-~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 90 (142)
T 2xcb_A 12 GLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGA-CRQSLGLYEQALQSYSYGALMDINEPRFPF 90 (142)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH-HHHHTTCHHHHHHHHHHHHHHCTTCTHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHH-HHHHHhhHHHHHHHHHHHHhcCCCCcHHHH
Confidence 345555566665543 567899999998887543 333343 44455654 34455666653 23 3345
Q ss_pred HHHHHHHHhcchhhhhhhc
Q psy14933 75 RVAALAIHLQLYVSDYSAA 93 (100)
Q Consensus 75 ~vA~lAi~LGm~dEA~~~a 93 (100)
.++.+-.++|.+++|.+.-
T Consensus 91 ~lg~~~~~~g~~~~A~~~~ 109 (142)
T 2xcb_A 91 HAAECHLQLGDLDGAESGF 109 (142)
T ss_dssp HHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHH
Confidence 6888999999999998653
No 63
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=50.44 E-value=49 Score=21.47 Aligned_cols=70 Identities=13% Similarity=0.069 Sum_probs=44.3
Q ss_pred HHhhcCCHHHHHHHhHhHHHHH---------HHHHHhhcccch-HHHHHHHHHhhC-ch-H--HHHHHHHHHHhcchhhh
Q psy14933 24 YYLNTGDLDQAFKSIAFITRLD---------VACICLGNMRDI-QGIWTLRYAQAE-PE-L--EARVAALAIHLQLYVSD 89 (100)
Q Consensus 24 ~~Lt~GnmD~Afkaik~IkRlD---------VA~vCLG~m~~a-r~A~alR~A~~e-~e-~--ea~vA~lAi~LGm~dEA 89 (100)
.++..|+.++|.+..+..-+++ -...|.-++|+- .+...+++|.+. |. . -...|.+-.++|.+++|
T Consensus 16 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A 95 (228)
T 4i17_A 16 DALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEY 95 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHH
Confidence 4567899999988776433221 023444455554 445567777654 42 2 34578888999999999
Q ss_pred hhhc
Q psy14933 90 YSAA 93 (100)
Q Consensus 90 ~~~a 93 (100)
.+.-
T Consensus 96 ~~~~ 99 (228)
T 4i17_A 96 IATL 99 (228)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8753
No 64
>3hdf_A Lysozyme; antimicrobial, bacteriolytic enzyme, glycosid hydrolase, late protein; 1.70A {Enterobacteria phage P21}
Probab=49.74 E-value=23 Score=24.16 Aligned_cols=23 Identities=26% Similarity=0.482 Sum_probs=19.6
Q ss_pred ccCHHHHHHHHHHHHHhhcCCHH
Q psy14933 10 CCDEVTRSAVINFSYYLNTGDLD 32 (100)
Q Consensus 10 ~~D~~tr~All~Fs~~Lt~GnmD 32 (100)
..++...+||.+|+|++-.|++-
T Consensus 68 ~l~q~q~dALvSfafNvG~g~~~ 90 (140)
T 3hdf_A 68 DIPETMRGALYSFVYNVGAGNFR 90 (140)
T ss_dssp CCCHHHHHHHHHHHHHHCTTSHH
T ss_pred cCCHHHHHHHHHHHHhcCCCccc
Confidence 44678899999999999999873
No 65
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=49.54 E-value=33 Score=19.22 Aligned_cols=68 Identities=9% Similarity=-0.038 Sum_probs=42.1
Q ss_pred HHhhcCCHHHHHHHhHhHH---------HHHHHHHHhhcccchHH-HHHHHHHhhC-chH---------HHHHHHHHHHh
Q psy14933 24 YYLNTGDLDQAFKSIAFIT---------RLDVACICLGNMRDIQG-IWTLRYAQAE-PEL---------EARVAALAIHL 83 (100)
Q Consensus 24 ~~Lt~GnmD~Afkaik~Ik---------RlDVA~vCLG~m~~ar~-A~alR~A~~e-~e~---------ea~vA~lAi~L 83 (100)
.+...|+.++|.+..+..- ....+. |+-++|+-.. ...++++.+- |+. --+.+..-..+
T Consensus 13 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~-~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~ 91 (111)
T 2l6j_A 13 SLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAM-ALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRLELAQGAV 91 (111)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH-HHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH-HHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHH
Confidence 4567899999988776433 334443 4555666544 4567777654 432 23466667778
Q ss_pred cchhhhhhh
Q psy14933 84 QLYVSDYSA 92 (100)
Q Consensus 84 Gm~dEA~~~ 92 (100)
|.+++|.+.
T Consensus 92 ~~~~~a~~~ 100 (111)
T 2l6j_A 92 GSVQIPVVE 100 (111)
T ss_dssp HCCCCCSSS
T ss_pred HhHhhhHhH
Confidence 888877653
No 66
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=48.52 E-value=25 Score=24.47 Aligned_cols=34 Identities=15% Similarity=0.277 Sum_probs=24.5
Q ss_pred cccCHHHHHHHHHHHHHhhcCCHHHHHHHhHhHH
Q psy14933 9 ECCDEVTRSAVINFSYYLNTGDLDQAFKSIAFIT 42 (100)
Q Consensus 9 e~~D~~tr~All~Fs~~Lt~GnmD~Afkaik~Ik 42 (100)
...++-.++.-.-..=|+..||++||.++|+-++
T Consensus 3 ~~~eel~kki~~lL~EY~~~~D~~EA~~cl~EL~ 36 (152)
T 2ion_A 3 QPVNHLVKEIDMLLKEYLLSGDISEAEHCLKELE 36 (152)
T ss_dssp CCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhC
Confidence 3344444554455667888999999999999776
No 67
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=48.29 E-value=47 Score=20.68 Aligned_cols=70 Identities=19% Similarity=0.050 Sum_probs=43.3
Q ss_pred HHHhhcCCHHHHHHHhHhHH---------HHHHHHHHhhcccch-HHHHHHHHHhhC-c---hHHHHHHHHHHHh-cchh
Q psy14933 23 SYYLNTGDLDQAFKSIAFIT---------RLDVACICLGNMRDI-QGIWTLRYAQAE-P---ELEARVAALAIHL-QLYV 87 (100)
Q Consensus 23 s~~Lt~GnmD~Afkaik~Ik---------RlDVA~vCLG~m~~a-r~A~alR~A~~e-~---e~ea~vA~lAi~L-Gm~d 87 (100)
..++..|+.++|.+..+..- ...++.++ ..+|+. .+...++++.+. | +.-..++.+...+ |.++
T Consensus 16 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~ 94 (225)
T 2vq2_A 16 MEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIY-QYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPA 94 (225)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHH-HHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHH
Confidence 35677899999988776443 33344433 344443 344456666542 3 2334577778888 9999
Q ss_pred hhhhhc
Q psy14933 88 SDYSAA 93 (100)
Q Consensus 88 EA~~~a 93 (100)
+|.+..
T Consensus 95 ~A~~~~ 100 (225)
T 2vq2_A 95 ESMAYF 100 (225)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 997753
No 68
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=48.20 E-value=59 Score=27.39 Aligned_cols=15 Identities=13% Similarity=0.321 Sum_probs=7.6
Q ss_pred HhhcCCHHHHHHHhH
Q psy14933 25 YLNTGDLDQAFKSIA 39 (100)
Q Consensus 25 ~Lt~GnmD~Afkaik 39 (100)
|...|+.++|.+..+
T Consensus 19 ~~~~G~~~eAi~~~~ 33 (723)
T 4gyw_A 19 KREQGNIEEAVRLYR 33 (723)
T ss_dssp HHHTTCHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHH
Confidence 444555555554443
No 69
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=48.06 E-value=40 Score=19.72 Aligned_cols=69 Identities=13% Similarity=0.031 Sum_probs=43.6
Q ss_pred HHhhcCCHHHHHHHhHhHH------------HHHHHHHHhhcccch-HHHHHHHHHhh-Cc---hHHHHHHHHHHHhcch
Q psy14933 24 YYLNTGDLDQAFKSIAFIT------------RLDVACICLGNMRDI-QGIWTLRYAQA-EP---ELEARVAALAIHLQLY 86 (100)
Q Consensus 24 ~~Lt~GnmD~Afkaik~Ik------------RlDVA~vCLG~m~~a-r~A~alR~A~~-e~---e~ea~vA~lAi~LGm~ 86 (100)
.+...|+.++|.+..+..- ....|. |+-++|+. .+...++++.+ .| +.--..+.+..++|.+
T Consensus 37 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~-~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 115 (148)
T 2dba_A 37 ELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAA-CHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRL 115 (148)
T ss_dssp HHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHH-HHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHH-HHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHHHHHcCCH
Confidence 5567899999998877443 233333 44455554 33445555553 23 2334578888999999
Q ss_pred hhhhhhc
Q psy14933 87 VSDYSAA 93 (100)
Q Consensus 87 dEA~~~a 93 (100)
++|.+.-
T Consensus 116 ~~A~~~~ 122 (148)
T 2dba_A 116 DQAVLDL 122 (148)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998653
No 70
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=48.04 E-value=71 Score=24.77 Aligned_cols=69 Identities=9% Similarity=0.089 Sum_probs=33.8
Q ss_pred HhhcCCHHHHHHHhHhHH---------HHHHHHHHhhcccch-HHHHHHHHHhh-Cc---hHHHHHHHH--HHHhcchhh
Q psy14933 25 YLNTGDLDQAFKSIAFIT---------RLDVACICLGNMRDI-QGIWTLRYAQA-EP---ELEARVAAL--AIHLQLYVS 88 (100)
Q Consensus 25 ~Lt~GnmD~Afkaik~Ik---------RlDVA~vCLG~m~~a-r~A~alR~A~~-e~---e~ea~vA~l--Ai~LGm~dE 88 (100)
|...|+.++|.+..+..- ....|.+ +-++|+- .+...+++|.+ +| +.-..++.+ ....|.+++
T Consensus 50 ~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~-~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~ 128 (477)
T 1wao_1 50 YLRTECYGYALGDATRAIELDKKYIKGYYRRAAS-NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFER 128 (477)
T ss_dssp HHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHH-HHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCC
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888877665332 2223332 2233333 33445566553 23 223345555 667788888
Q ss_pred hhhhcC
Q psy14933 89 DYSAAD 94 (100)
Q Consensus 89 A~~~a~ 94 (100)
|.+..+
T Consensus 129 A~~~~~ 134 (477)
T 1wao_1 129 AIAGDE 134 (477)
T ss_dssp C-----
T ss_pred Hhcccc
Confidence 888765
No 71
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=47.09 E-value=40 Score=19.50 Aligned_cols=67 Identities=12% Similarity=-0.004 Sum_probs=38.4
Q ss_pred HhhcCCHHHHHHHhHhHH------------HHHHHHHHhhcccchH-HHHHHHHHhh-Cch----HH--HHHHHHHHHhc
Q psy14933 25 YLNTGDLDQAFKSIAFIT------------RLDVACICLGNMRDIQ-GIWTLRYAQA-EPE----LE--ARVAALAIHLQ 84 (100)
Q Consensus 25 ~Lt~GnmD~Afkaik~Ik------------RlDVA~vCLG~m~~ar-~A~alR~A~~-e~e----~e--a~vA~lAi~LG 84 (100)
++..|+.++|.+..+.+- ..-.+ .|.-++|+-. +...++++.+ .|+ .+ -.+|.+-.++|
T Consensus 12 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg-~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g 90 (129)
T 2xev_A 12 ALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLG-ESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEG 90 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTT
T ss_pred HHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHH-HHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcC
Confidence 456788888877776443 22233 2344455543 3344555543 232 22 34677778888
Q ss_pred chhhhhhh
Q psy14933 85 LYVSDYSA 92 (100)
Q Consensus 85 m~dEA~~~ 92 (100)
.+++|.+.
T Consensus 91 ~~~~A~~~ 98 (129)
T 2xev_A 91 KNTEAQQT 98 (129)
T ss_dssp CHHHHHHH
T ss_pred CHHHHHHH
Confidence 88888764
No 72
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=45.20 E-value=59 Score=20.90 Aligned_cols=80 Identities=14% Similarity=0.067 Sum_probs=45.3
Q ss_pred HHHHHHHHHHH-HHhhcCCHHHHHHHhHhHH-----------------HHHHHHHHhhcccchH-HHHHHHHHhhC----
Q psy14933 13 EVTRSAVINFS-YYLNTGDLDQAFKSIAFIT-----------------RLDVACICLGNMRDIQ-GIWTLRYAQAE---- 69 (100)
Q Consensus 13 ~~tr~All~Fs-~~Lt~GnmD~Afkaik~Ik-----------------RlDVA~vCLG~m~~ar-~A~alR~A~~e---- 69 (100)
+....+..+.. .|...|+.++|.+..+..- ...+|. |+-.+|+.. +...++++.+-
T Consensus 82 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~~~~ 160 (283)
T 3edt_B 82 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLAL-LCQNQGKAEEVEYYYRRALEIYATR 160 (283)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 33444444433 4667899999987655332 222333 333445443 33445555432
Q ss_pred -----ch---HHHHHHHHHHHhcchhhhhhhc
Q psy14933 70 -----PE---LEARVAALAIHLQLYVSDYSAA 93 (100)
Q Consensus 70 -----~e---~ea~vA~lAi~LGm~dEA~~~a 93 (100)
|. .-..+|.+-..+|.+++|.+..
T Consensus 161 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 192 (283)
T 3edt_B 161 LGPDDPNVAKTKNNLASCYLKQGKYQDAETLY 192 (283)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 21 1234788889999999998754
No 73
>2o7a_A Lysozyme; protein folding, protein stability, circular permutant, hydrolase; HET: SME; 0.84A {Enterobacteria phage T4}
Probab=44.31 E-value=9 Score=26.39 Aligned_cols=24 Identities=25% Similarity=0.481 Sum_probs=20.5
Q ss_pred cccCHHHHHHHHHHHHHhhcCCHH
Q psy14933 9 ECCDEVTRSAVINFSYYLNTGDLD 32 (100)
Q Consensus 9 e~~D~~tr~All~Fs~~Lt~GnmD 32 (100)
..+++..+.||.+|.|+|-.|.+-
T Consensus 31 ~~l~~~r~~ALvsfaFNlG~g~l~ 54 (124)
T 2o7a_A 31 DSLDAVRRAALINMVFQMGETGVA 54 (124)
T ss_dssp HHSCHHHHHHHHHHHHHHCHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCchhhc
Confidence 467899999999999999887654
No 74
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=42.93 E-value=89 Score=22.28 Aligned_cols=82 Identities=16% Similarity=0.118 Sum_probs=45.3
Q ss_pred CHHHH--HHHHHHHHHhhcCCHH------------HHHHHhHhHH-HHH----------HHHHHhhcccchHHHHHHHHH
Q psy14933 12 DEVTR--SAVINFSYYLNTGDLD------------QAFKSIAFIT-RLD----------VACICLGNMRDIQGIWTLRYA 66 (100)
Q Consensus 12 D~~tr--~All~Fs~~Lt~GnmD------------~Afkaik~Ik-RlD----------VA~vCLG~m~~ar~A~alR~A 66 (100)
|.... -.+++|.|++-.++++ +.++.|+... .+| .+..+...=....+....++|
T Consensus 48 ~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~a 127 (378)
T 3q15_A 48 DQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREA 127 (378)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence 44444 6788999999877764 4444444333 222 222222221223344455666
Q ss_pred hhC----c--h----HHHHHHHHHHHhcchhhhhhhc
Q psy14933 67 QAE----P--E----LEARVAALAIHLQLYVSDYSAA 93 (100)
Q Consensus 67 ~~e----~--e----~ea~vA~lAi~LGm~dEA~~~a 93 (100)
.+- + . .--.+|.+-.++|.+++|.+..
T Consensus 128 l~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~ 164 (378)
T 3q15_A 128 EKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHI 164 (378)
T ss_dssp HTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 532 2 1 1234788888999999887653
No 75
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=42.78 E-value=92 Score=22.44 Aligned_cols=29 Identities=17% Similarity=0.205 Sum_probs=12.5
Q ss_pred hhcCCHHHHHHHhHhHH---HHHHHHHHhhcc
Q psy14933 26 LNTGDLDQAFKSIAFIT---RLDVACICLGNM 54 (100)
Q Consensus 26 Lt~GnmD~Afkaik~Ik---RlDVA~vCLG~m 54 (100)
|..||++-|-+|-+.++ +|=.--.|.|+.
T Consensus 45 L~~gn~~lAe~cy~~~~D~~~L~~Ly~~tg~~ 76 (177)
T 3mkq_B 45 LAQGNASLAEMIYQTQHSFDKLSFLYLVTGDV 76 (177)
T ss_dssp HHTTCHHHHHHHHHHTTCHHHHHHHHHHHTCH
T ss_pred HHcCChHHHHHHHHHhCCHHHHHHHHHHhCCH
Confidence 44555544433333333 444444444444
No 76
>4e97_A Lysozyme; hydrolase, alkylation with 2-mercaptoethanol; 1.30A {Enterobacteria phage T4} PDB: 4ekp_A 4ekq_A* 4ekr_A 4eks_A
Probab=42.55 E-value=9.1 Score=27.11 Aligned_cols=42 Identities=14% Similarity=0.186 Sum_probs=27.6
Q ss_pred ccCHHHHHHHHHHHHHhhcCCHHHHHHHhHhHHHHHHHHHHh
Q psy14933 10 CCDEVTRSAVINFSYYLNTGDLDQAFKSIAFITRLDVACICL 51 (100)
Q Consensus 10 ~~D~~tr~All~Fs~~Lt~GnmD~Afkaik~IkRlDVA~vCL 51 (100)
+.++..+.||.+|+|+|-.|++-.=-+-++.|+.=|-...|.
T Consensus 113 ~l~~~~~~ALvsm~FNlG~~~l~kf~~ml~~ln~gd~~~Aa~ 154 (187)
T 4e97_A 113 SLDAVRRCAAINHVFQMGVTGVAGFTNVLRMLQQKRWDEAAV 154 (187)
T ss_dssp HSCHHHHHHHHHHHHHHCHHHHHTCHHHHHHHHTTCHHHHHH
T ss_pred cCCHHHHHHheeeeeccCCcchhhCHHHHHHHHcCCHHHHHH
Confidence 578899999999999999887643112444444334444443
No 77
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=42.20 E-value=90 Score=22.13 Aligned_cols=69 Identities=12% Similarity=0.011 Sum_probs=44.3
Q ss_pred HHHhhcCCHHHHHHHhHhHH---------HHHHHHHHhhcccch-HHHHHHHHHhhC-ch---HHHHHHHHHHHhcchhh
Q psy14933 23 SYYLNTGDLDQAFKSIAFIT---------RLDVACICLGNMRDI-QGIWTLRYAQAE-PE---LEARVAALAIHLQLYVS 88 (100)
Q Consensus 23 s~~Lt~GnmD~Afkaik~Ik---------RlDVA~vCLG~m~~a-r~A~alR~A~~e-~e---~ea~vA~lAi~LGm~dE 88 (100)
..++..|+.++|.+..+.+- ....+. |+-++|+. .+...++++.+. |. .-..++.+-..+|.+++
T Consensus 34 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~-~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 112 (450)
T 2y4t_A 34 KKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRAT-VFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDE 112 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH-HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHH-HHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHH
Confidence 45677899999998887543 233343 33444544 344556666543 32 23457888899999999
Q ss_pred hhhh
Q psy14933 89 DYSA 92 (100)
Q Consensus 89 A~~~ 92 (100)
|.+.
T Consensus 113 A~~~ 116 (450)
T 2y4t_A 113 AEDD 116 (450)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9875
No 78
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=41.61 E-value=63 Score=22.70 Aligned_cols=18 Identities=11% Similarity=0.204 Sum_probs=12.6
Q ss_pred HHHHHHHHhcchhhhhhh
Q psy14933 75 RVAALAIHLQLYVSDYSA 92 (100)
Q Consensus 75 ~vA~lAi~LGm~dEA~~~ 92 (100)
.++.+-.++|.+++|.+.
T Consensus 160 ~lg~~~~~~g~~~~A~~~ 177 (307)
T 2ifu_A 160 KASRLLVRQQKFDEAAAS 177 (307)
T ss_dssp HHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHH
Confidence 357777777888777654
No 79
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=41.48 E-value=87 Score=21.77 Aligned_cols=18 Identities=17% Similarity=0.145 Sum_probs=14.8
Q ss_pred HHHHHHHHhcchhhhhhh
Q psy14933 75 RVAALAIHLQLYVSDYSA 92 (100)
Q Consensus 75 ~vA~lAi~LGm~dEA~~~ 92 (100)
.++.+-.++|.+++|.+.
T Consensus 163 ~lg~~~~~~g~~~~A~~~ 180 (292)
T 1qqe_A 163 KCADLKALDGQYIEASDI 180 (292)
T ss_dssp HHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHH
Confidence 468888899999999765
No 80
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=41.47 E-value=77 Score=21.15 Aligned_cols=14 Identities=29% Similarity=0.249 Sum_probs=6.5
Q ss_pred hhcCCHHHHHHHhH
Q psy14933 26 LNTGDLDQAFKSIA 39 (100)
Q Consensus 26 Lt~GnmD~Afkaik 39 (100)
...|+.++|.+..+
T Consensus 17 ~~~~~~~~A~~~~~ 30 (273)
T 1ouv_A 17 YKEKDFTQAKKYFE 30 (273)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HhCCCHHHHHHHHH
Confidence 33455555544443
No 81
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=41.10 E-value=42 Score=18.06 Aligned_cols=17 Identities=29% Similarity=0.444 Sum_probs=12.5
Q ss_pred HHhhcCCHHHHHHHhHh
Q psy14933 24 YYLNTGDLDQAFKSIAF 40 (100)
Q Consensus 24 ~~Lt~GnmD~Afkaik~ 40 (100)
.+...|+.++|.+..+.
T Consensus 18 ~~~~~~~~~~A~~~~~~ 34 (91)
T 1na3_A 18 AYYKQGDYDEAIEYYQK 34 (91)
T ss_dssp HHHHTTCHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHH
Confidence 35678999988877654
No 82
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=40.94 E-value=14 Score=24.77 Aligned_cols=22 Identities=23% Similarity=0.356 Sum_probs=18.3
Q ss_pred HHHHHhhcCCHHHHHHHhHhHH
Q psy14933 21 NFSYYLNTGDLDQAFKSIAFIT 42 (100)
Q Consensus 21 ~Fs~~Lt~GnmD~Afkaik~Ik 42 (100)
-..=|+..||++||.++|+-++
T Consensus 13 ll~EY~~~~D~~Ea~~cl~eL~ 34 (129)
T 2nsz_A 13 LLKEYLLSGDISEAEHCLKELE 34 (129)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHcCCCHHHHHHHHHHhC
Confidence 3456788999999999999776
No 83
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0
Probab=40.82 E-value=30 Score=22.32 Aligned_cols=51 Identities=20% Similarity=0.195 Sum_probs=37.9
Q ss_pred cCCcccCHHHHHHHHHHHHH----hhcCCHHHHHHHhHhHHHHHHHHHHhhcccc
Q psy14933 6 VGIECCDEVTRSAVINFSYY----LNTGDLDQAFKSIAFITRLDVACICLGNMRD 56 (100)
Q Consensus 6 ~Gle~~D~~tr~All~Fs~~----Lt~GnmD~Afkaik~IkRlDVA~vCLG~m~~ 56 (100)
+-+.+.++.+-+.+|+|-|. ++..|+.+-+.+-...+=.++...|-..+++
T Consensus 63 i~l~~v~~~~f~~ll~fiYtg~~~i~~~~v~~ll~aA~~l~i~~l~~~C~~~~~~ 117 (119)
T 3m5b_A 63 ALGEGISPSTFAQLLNFVYGESVELQPGELRPLQEAARALGVQSLEEACWRARGD 117 (119)
T ss_dssp ECCSSCCHHHHHHHHHHHTTCCEEECGGGHHHHHHHHHHTTCHHHHHHHHHHC--
T ss_pred EEeCCCCHHHHHHHHHHHcCCCcCcCHHHHHHHHHHHHHhCCHHHHHHHHHHHhh
Confidence 45677889999999999994 4556777777777777777788888777665
No 84
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=40.78 E-value=76 Score=20.87 Aligned_cols=80 Identities=11% Similarity=0.041 Sum_probs=45.1
Q ss_pred HHHHHHHHHHH-HHhhcCCHHHHHHHhHhHH-----------------HHHHHHHHhhcccch-HHHHHHHHHhhC----
Q psy14933 13 EVTRSAVINFS-YYLNTGDLDQAFKSIAFIT-----------------RLDVACICLGNMRDI-QGIWTLRYAQAE---- 69 (100)
Q Consensus 13 ~~tr~All~Fs-~~Lt~GnmD~Afkaik~Ik-----------------RlDVA~vCLG~m~~a-r~A~alR~A~~e---- 69 (100)
+....+..+.. .|...|+.++|.+..+..- ...+|. |+-.+|+. .+...++++.+.
T Consensus 108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~-~~~~~~~~~~A~~~~~~a~~~~~~~ 186 (311)
T 3nf1_A 108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLAL-LCQNQGKYEEVEYYYQRALEIYQTK 186 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 33333433333 4667899999987665332 122233 33344443 344455555442
Q ss_pred -----ch---HHHHHHHHHHHhcchhhhhhhc
Q psy14933 70 -----PE---LEARVAALAIHLQLYVSDYSAA 93 (100)
Q Consensus 70 -----~e---~ea~vA~lAi~LGm~dEA~~~a 93 (100)
|. .-..+|.+-..+|.+++|++..
T Consensus 187 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 218 (311)
T 3nf1_A 187 LGPDDPNVAKTKNNLASCYLKQGKFKQAETLY 218 (311)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 21 1234788889999999998754
No 85
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=40.32 E-value=1e+02 Score=22.12 Aligned_cols=69 Identities=13% Similarity=0.122 Sum_probs=44.1
Q ss_pred HHHhhcCCHHHHHHHhHhHH--------HHHHHHHHhhcccch-HHHHHHHHHhh-Cch-H--HHHHHHHHHHhcchhhh
Q psy14933 23 SYYLNTGDLDQAFKSIAFIT--------RLDVACICLGNMRDI-QGIWTLRYAQA-EPE-L--EARVAALAIHLQLYVSD 89 (100)
Q Consensus 23 s~~Lt~GnmD~Afkaik~Ik--------RlDVA~vCLG~m~~a-r~A~alR~A~~-e~e-~--ea~vA~lAi~LGm~dEA 89 (100)
..++..|+.++|.+..+..- ....|.++ -++|+. .+...++++.+ +|. . --..|.+-.++|.+++|
T Consensus 14 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 92 (514)
T 2gw1_A 14 NQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACY-VSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADA 92 (514)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHH-HHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHH-HHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHH
Confidence 45677899999988777443 44445444 445554 34455666653 342 2 34578888999999999
Q ss_pred hhh
Q psy14933 90 YSA 92 (100)
Q Consensus 90 ~~~ 92 (100)
.+.
T Consensus 93 ~~~ 95 (514)
T 2gw1_A 93 MFD 95 (514)
T ss_dssp HHH
T ss_pred HHH
Confidence 864
No 86
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=39.67 E-value=74 Score=20.42 Aligned_cols=80 Identities=10% Similarity=-0.049 Sum_probs=44.0
Q ss_pred HHHHHHHHHHH-HHhhcCCHHHHHHHhHhHH-----------------HHHHHHHHhhcccch-HHHHHHHHHhhC----
Q psy14933 13 EVTRSAVINFS-YYLNTGDLDQAFKSIAFIT-----------------RLDVACICLGNMRDI-QGIWTLRYAQAE---- 69 (100)
Q Consensus 13 ~~tr~All~Fs-~~Lt~GnmD~Afkaik~Ik-----------------RlDVA~vCLG~m~~a-r~A~alR~A~~e---- 69 (100)
+....++.+.. .|...|+.++|.+..+..- ...+|. |+..+|+. .+...+++|.+-
T Consensus 40 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~~~~A~~~~~~al~~~~~~ 118 (283)
T 3edt_B 40 PDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAV-LYGKRGKYKEAEPLCKRALEIREKV 118 (283)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHH-HHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHH-HHHHhccHHHHHHHHHHHHHHHHHH
Confidence 33334433332 4567899999987665332 122222 23334443 333445555432
Q ss_pred -----ch---HHHHHHHHHHHhcchhhhhhhc
Q psy14933 70 -----PE---LEARVAALAIHLQLYVSDYSAA 93 (100)
Q Consensus 70 -----~e---~ea~vA~lAi~LGm~dEA~~~a 93 (100)
|. .-..+|.+...+|.+++|++..
T Consensus 119 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 150 (283)
T 3edt_B 119 LGKFHPDVAKQLNNLALLCQNQGKAEEVEYYY 150 (283)
T ss_dssp HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred cCCCChHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 32 1244788888999999998753
No 87
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=39.01 E-value=95 Score=21.49 Aligned_cols=69 Identities=13% Similarity=0.011 Sum_probs=44.7
Q ss_pred HHHhhcCCHHHHHHHhHhHH---------HHHHHHHHhhcccch-HHHHHHHHHhh-Cch---HHHHHHHHHHHhcchhh
Q psy14933 23 SYYLNTGDLDQAFKSIAFIT---------RLDVACICLGNMRDI-QGIWTLRYAQA-EPE---LEARVAALAIHLQLYVS 88 (100)
Q Consensus 23 s~~Lt~GnmD~Afkaik~Ik---------RlDVA~vCLG~m~~a-r~A~alR~A~~-e~e---~ea~vA~lAi~LGm~dE 88 (100)
..++..|+.++|.+..+..- ....+.++. ++|+. .+...++++.+ +|. .-..++.+-.++|.+++
T Consensus 73 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 151 (365)
T 4eqf_A 73 LKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQA-ENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQD 151 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHH
Confidence 35677899999998887543 333444333 34443 44555666664 342 23457888889999999
Q ss_pred hhhh
Q psy14933 89 DYSA 92 (100)
Q Consensus 89 A~~~ 92 (100)
|.+.
T Consensus 152 A~~~ 155 (365)
T 4eqf_A 152 ACEA 155 (365)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9875
No 88
>4evx_A Putative phage endolysin; structural genomics, PSI-biology, program for the characteri secreted effector proteins, pcsep; HET: MLY MSE; 1.70A {Salmonella enterica subsp}
Probab=38.98 E-value=20 Score=23.39 Aligned_cols=22 Identities=14% Similarity=0.309 Sum_probs=18.4
Q ss_pred ccCHHHHHHHHHHHHHhhcCCH
Q psy14933 10 CCDEVTRSAVINFSYYLNTGDL 31 (100)
Q Consensus 10 ~~D~~tr~All~Fs~~Lt~Gnm 31 (100)
..++....||.+|+|++-.|++
T Consensus 77 ~l~q~q~dALvSf~yNvG~g~~ 98 (106)
T 4evx_A 77 LNDRFQRETLIALMFSIGHQRF 98 (106)
T ss_dssp CCCHHHHHHHHHHHHHHHSCCC
T ss_pred CCCHHHHHHHHHHhHhCCHHHH
Confidence 3467889999999999988864
No 89
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=38.60 E-value=1.1e+02 Score=22.17 Aligned_cols=67 Identities=12% Similarity=0.140 Sum_probs=33.0
Q ss_pred HhhcCCHHHHHHHhHhHH---------HHHHHHHHhhcccch-HHHHHHHHHhhC-c---hHHHHHHHHHHHhcchhhhh
Q psy14933 25 YLNTGDLDQAFKSIAFIT---------RLDVACICLGNMRDI-QGIWTLRYAQAE-P---ELEARVAALAIHLQLYVSDY 90 (100)
Q Consensus 25 ~Lt~GnmD~Afkaik~Ik---------RlDVA~vCLG~m~~a-r~A~alR~A~~e-~---e~ea~vA~lAi~LGm~dEA~ 90 (100)
+...|+.++|.+..+..- ....+.++ -++|+. .+...++++.+. | +.-..++.+..++|.+++|.
T Consensus 320 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 398 (537)
T 3fp2_A 320 YFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLL-YKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAI 398 (537)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHH
Confidence 445667776666655332 22233322 233333 233344444422 2 23344666677777777776
Q ss_pred hh
Q psy14933 91 SA 92 (100)
Q Consensus 91 ~~ 92 (100)
+.
T Consensus 399 ~~ 400 (537)
T 3fp2_A 399 KQ 400 (537)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 90
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=38.28 E-value=71 Score=19.82 Aligned_cols=69 Identities=9% Similarity=0.016 Sum_probs=42.8
Q ss_pred HHHhhcCCHHHHHHHhHhHH---------HHHHHHHHhhcccch-HHHHHHHHHhh-Cch---HHHHHHHHHHHhcchhh
Q psy14933 23 SYYLNTGDLDQAFKSIAFIT---------RLDVACICLGNMRDI-QGIWTLRYAQA-EPE---LEARVAALAIHLQLYVS 88 (100)
Q Consensus 23 s~~Lt~GnmD~Afkaik~Ik---------RlDVA~vCLG~m~~a-r~A~alR~A~~-e~e---~ea~vA~lAi~LGm~dE 88 (100)
..+...|+.++|....+... ....+ .|+-++|+- .+...++++.+ +|+ .--.+|.+-.++|.+++
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg-~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNTVYADAYYKLG-LVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHH-HHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 35567788888887766443 22222 344455554 34455666654 342 23458888899999999
Q ss_pred hhhh
Q psy14933 89 DYSA 92 (100)
Q Consensus 89 A~~~ 92 (100)
|.+.
T Consensus 160 A~~~ 163 (184)
T 3vtx_A 160 AVKY 163 (184)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9864
No 91
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=38.08 E-value=96 Score=21.29 Aligned_cols=18 Identities=6% Similarity=-0.199 Sum_probs=12.9
Q ss_pred HHHHHHHHhcchhhhhhh
Q psy14933 75 RVAALAIHLQLYVSDYSA 92 (100)
Q Consensus 75 ~vA~lAi~LGm~dEA~~~ 92 (100)
.+|.+...+|.+++|.+.
T Consensus 312 ~la~~~~~~g~~~~A~~~ 329 (406)
T 3sf4_A 312 SLGNAYTALGNHDQAMHF 329 (406)
T ss_dssp HHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHH
Confidence 466777778888887764
No 92
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=37.92 E-value=77 Score=20.15 Aligned_cols=68 Identities=21% Similarity=0.235 Sum_probs=41.5
Q ss_pred HHhhcCCHHHHHHHhHhHH---------HHHHHHHHhhcccch-HHHHHHHHHhhC-c---hHHHHHHHHHHHhcchhhh
Q psy14933 24 YYLNTGDLDQAFKSIAFIT---------RLDVACICLGNMRDI-QGIWTLRYAQAE-P---ELEARVAALAIHLQLYVSD 89 (100)
Q Consensus 24 ~~Lt~GnmD~Afkaik~Ik---------RlDVA~vCLG~m~~a-r~A~alR~A~~e-~---e~ea~vA~lAi~LGm~dEA 89 (100)
.+...|+.++|.+..+..- ...++. |+-++|+. .+...++++.+. | +.-..++.+-.++|.+++|
T Consensus 148 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~-~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A 226 (258)
T 3uq3_A 148 EYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAA-ALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASA 226 (258)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH-HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHH-HHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHH
Confidence 4567799999888776443 333343 33445543 344455666532 3 2234578888888998888
Q ss_pred hhh
Q psy14933 90 YSA 92 (100)
Q Consensus 90 ~~~ 92 (100)
.+.
T Consensus 227 ~~~ 229 (258)
T 3uq3_A 227 LET 229 (258)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 93
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=37.89 E-value=65 Score=22.59 Aligned_cols=15 Identities=7% Similarity=0.142 Sum_probs=8.7
Q ss_pred hhcCCHHHHHHHhHh
Q psy14933 26 LNTGDLDQAFKSIAF 40 (100)
Q Consensus 26 Lt~GnmD~Afkaik~ 40 (100)
+..|+.++|....+.
T Consensus 128 ~~~g~~~~A~~~~~~ 142 (287)
T 3qou_A 128 MQESNYTDALPLLXD 142 (287)
T ss_dssp HHTTCHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHH
Confidence 445666666665553
No 94
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=37.76 E-value=64 Score=19.18 Aligned_cols=68 Identities=12% Similarity=0.117 Sum_probs=33.2
Q ss_pred HhhcCCHHHHHHHhHhHH---------HHHHHHHHhhcccch-HHHHHHHHHhhC-c---hHHHHHHHHHHHhcchhhhh
Q psy14933 25 YLNTGDLDQAFKSIAFIT---------RLDVACICLGNMRDI-QGIWTLRYAQAE-P---ELEARVAALAIHLQLYVSDY 90 (100)
Q Consensus 25 ~Lt~GnmD~Afkaik~Ik---------RlDVA~vCLG~m~~a-r~A~alR~A~~e-~---e~ea~vA~lAi~LGm~dEA~ 90 (100)
+...|+.++|.+..+..- ..-.|.++ .++|+. .+...++++.+. | +.-..++.+...+|.+++|.
T Consensus 52 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~ 130 (186)
T 3as5_A 52 YVKTGAVDRGTELLERSLADAPDNVKVATVLGLTY-VQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAI 130 (186)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH-HHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHH
Confidence 445677777766655332 22223222 223332 233344444432 2 22334666667777777776
Q ss_pred hhc
Q psy14933 91 SAA 93 (100)
Q Consensus 91 ~~a 93 (100)
+..
T Consensus 131 ~~~ 133 (186)
T 3as5_A 131 DSF 133 (186)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 95
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=37.53 E-value=1.4e+02 Score=22.88 Aligned_cols=67 Identities=12% Similarity=0.014 Sum_probs=40.7
Q ss_pred HhhcCCHHHHHHHhHhHH---------HHHHHHHHhhcccch-HHHHHHHHHhhC-ch---HHHHHHHHHHHh---cchh
Q psy14933 25 YLNTGDLDQAFKSIAFIT---------RLDVACICLGNMRDI-QGIWTLRYAQAE-PE---LEARVAALAIHL---QLYV 87 (100)
Q Consensus 25 ~Lt~GnmD~Afkaik~Ik---------RlDVA~vCLG~m~~a-r~A~alR~A~~e-~e---~ea~vA~lAi~L---Gm~d 87 (100)
|...|+.++|.+..+..- ....|. |+-++|+. .+...++++.+. |+ .-..++.+..++ |.++
T Consensus 67 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~ 145 (568)
T 2vsy_A 67 RWTQQRHAEAAVLLQQASDAAPEHPGIALWLGH-ALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALD 145 (568)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH-HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHH
T ss_pred HHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHH
Confidence 556788888877766332 333443 33444444 344556666543 42 234578888888 9999
Q ss_pred hhhhh
Q psy14933 88 SDYSA 92 (100)
Q Consensus 88 EA~~~ 92 (100)
+|.+.
T Consensus 146 ~A~~~ 150 (568)
T 2vsy_A 146 VLSAQ 150 (568)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88764
No 96
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=37.01 E-value=88 Score=20.54 Aligned_cols=19 Identities=5% Similarity=-0.062 Sum_probs=12.0
Q ss_pred HHHHHHHHHhcchhhhhhh
Q psy14933 74 ARVAALAIHLQLYVSDYSA 92 (100)
Q Consensus 74 a~vA~lAi~LGm~dEA~~~ 92 (100)
..+|.+-..+|.+++|.+.
T Consensus 92 ~~lg~~~~~~g~~~~A~~~ 110 (208)
T 3urz_A 92 EACAEMQVCRGQEKDALRM 110 (208)
T ss_dssp HHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHH
Confidence 3466666677777777653
No 97
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=36.41 E-value=1.6e+02 Score=24.74 Aligned_cols=67 Identities=16% Similarity=0.205 Sum_probs=33.5
Q ss_pred HhhcCCHHHHHHHhHh-HH--------HHHHHHHHhhcccchH-HHHHHHHHhh-Cch-HH--HHHHHHHHHhcchhhhh
Q psy14933 25 YLNTGDLDQAFKSIAF-IT--------RLDVACICLGNMRDIQ-GIWTLRYAQA-EPE-LE--ARVAALAIHLQLYVSDY 90 (100)
Q Consensus 25 ~Lt~GnmD~Afkaik~-Ik--------RlDVA~vCLG~m~~ar-~A~alR~A~~-e~e-~e--a~vA~lAi~LGm~dEA~ 90 (100)
+...|+.++|....+- |+ ....+. |+-.+|+.. +....++|.+ +|+ .+ ..+|.+-.++|.++||+
T Consensus 53 l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~-~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi 131 (723)
T 4gyw_A 53 LQQQGKLQEALMHYKEAIRISPTFADAYSNMGN-TLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAI 131 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH-HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 4566777777766652 22 222222 222333332 3334555543 332 22 34666677777777776
Q ss_pred hh
Q psy14933 91 SA 92 (100)
Q Consensus 91 ~~ 92 (100)
+.
T Consensus 132 ~~ 133 (723)
T 4gyw_A 132 AS 133 (723)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 98
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=36.17 E-value=1.1e+02 Score=21.41 Aligned_cols=18 Identities=0% Similarity=-0.221 Sum_probs=13.5
Q ss_pred HHHHHHHHhcchhhhhhh
Q psy14933 75 RVAALAIHLQLYVSDYSA 92 (100)
Q Consensus 75 ~vA~lAi~LGm~dEA~~~ 92 (100)
.++.+..++|.+++|.+.
T Consensus 348 ~la~~~~~~g~~~~A~~~ 365 (411)
T 4a1s_A 348 SLGNAHSAIGGHERALKY 365 (411)
T ss_dssp HHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHH
Confidence 367777888888888764
No 99
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=35.87 E-value=65 Score=18.67 Aligned_cols=18 Identities=17% Similarity=0.272 Sum_probs=13.1
Q ss_pred HHhhcCCHHHHHHHhHhH
Q psy14933 24 YYLNTGDLDQAFKSIAFI 41 (100)
Q Consensus 24 ~~Lt~GnmD~Afkaik~I 41 (100)
.|...|+.++|.+..+..
T Consensus 28 ~~~~~g~~~~A~~~~~~a 45 (115)
T 2kat_A 28 TYAEHEQFDAALPHLRAA 45 (115)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHH
Confidence 356789999988877643
No 100
>3qb5_K Translin-associated protein X; alpha helical bundle, ribonuclease, hydrolase; 2.95A {Homo sapiens} PDB: 3pja_J
Probab=35.78 E-value=35 Score=26.30 Aligned_cols=44 Identities=18% Similarity=0.291 Sum_probs=37.0
Q ss_pred HhhcCCHHHHHHHhHhHH-------------------HHHHHHHHhhcccchHHHHHHHHHhh
Q psy14933 25 YLNTGDLDQAFKSIAFIT-------------------RLDVACICLGNMRDIQGIWTLRYAQA 68 (100)
Q Consensus 25 ~Lt~GnmD~Afkaik~Ik-------------------RlDVA~vCLG~m~~ar~A~alR~A~~ 68 (100)
.++.||++.+++-.+.++ ++||.+-++.|++++.=...||-.+.
T Consensus 205 sv~~Gd~~~~~~i~~fm~~Ly~gf~~L~~~~~~~LrKK~d~lk~svkKvE~v~Ydl~vRg~e~ 267 (290)
T 3qb5_K 205 SVGNGDIDTPFEVSQFLRQVYDGFSFIGNTGPYEVSKKLYTLKQSLAKVENACYALKVRGSEI 267 (290)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHhccchHHHHHHHHHHHHHHHHHHhcCCCCChhhhHHHHHHHHHHHHHHHHhhheeeecCCC
Confidence 357899999988877776 89999999999999988888887653
No 101
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=35.54 E-value=1.2e+02 Score=21.84 Aligned_cols=67 Identities=9% Similarity=-0.020 Sum_probs=40.9
Q ss_pred HHhhcCCHHHHHHHhHhHH---------HHHHHHHHhhcccch-HHHHHHHHHhh-Cc---hHHHHHHHHHHHhcchhhh
Q psy14933 24 YYLNTGDLDQAFKSIAFIT---------RLDVACICLGNMRDI-QGIWTLRYAQA-EP---ELEARVAALAIHLQLYVSD 89 (100)
Q Consensus 24 ~~Lt~GnmD~Afkaik~Ik---------RlDVA~vCLG~m~~a-r~A~alR~A~~-e~---e~ea~vA~lAi~LGm~dEA 89 (100)
.|+..|+.++|.+..+..- ....|. |+-++|+- .+...+++|.+ +| +.-..++.+-.++|.+++|
T Consensus 205 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~-~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 205 CHLKLQAFSAAIESCNKALELDSNNEKGLSRRGE-AHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH-HHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH-HHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3567899999988776443 222333 33344443 33445666653 34 2334578888899999988
Q ss_pred hh
Q psy14933 90 YS 91 (100)
Q Consensus 90 ~~ 91 (100)
++
T Consensus 284 ~~ 285 (336)
T 1p5q_A 284 EK 285 (336)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 102
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=35.50 E-value=89 Score=20.17 Aligned_cols=69 Identities=10% Similarity=-0.051 Sum_probs=43.3
Q ss_pred HHhhcCCHHHHHHHhHhHH---------HHHHHHHHhhcccch-HHHHHHHHHhh-Cch-H---------HHHHHHHHHH
Q psy14933 24 YYLNTGDLDQAFKSIAFIT---------RLDVACICLGNMRDI-QGIWTLRYAQA-EPE-L---------EARVAALAIH 82 (100)
Q Consensus 24 ~~Lt~GnmD~Afkaik~Ik---------RlDVA~vCLG~m~~a-r~A~alR~A~~-e~e-~---------ea~vA~lAi~ 82 (100)
.+...|+.++|.+..+..- ....|. |+-++|+- .+...++++.+ +|+ . -...+.+...
T Consensus 51 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~-~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~ 129 (228)
T 4i17_A 51 CADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA-AYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQ 129 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH-HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH-HHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHH
Confidence 3567899999988776433 333443 33445554 44556677764 342 1 2447788888
Q ss_pred hcchhhhhhhc
Q psy14933 83 LQLYVSDYSAA 93 (100)
Q Consensus 83 LGm~dEA~~~a 93 (100)
+|.+++|++.-
T Consensus 130 ~~~~~~A~~~~ 140 (228)
T 4i17_A 130 AGNIEKAEENY 140 (228)
T ss_dssp TTCHHHHHHHH
T ss_pred hccHHHHHHHH
Confidence 99999998753
No 103
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=35.00 E-value=1.3e+02 Score=21.84 Aligned_cols=69 Identities=13% Similarity=-0.007 Sum_probs=35.8
Q ss_pred HHHhhcCCHHHHHHHhHhHH--------HHHHHHHHhhcccc-hHHHHHHHHHhhC-c---hHHHHHHHHHHHhcchhhh
Q psy14933 23 SYYLNTGDLDQAFKSIAFIT--------RLDVACICLGNMRD-IQGIWTLRYAQAE-P---ELEARVAALAIHLQLYVSD 89 (100)
Q Consensus 23 s~~Lt~GnmD~Afkaik~Ik--------RlDVA~vCLG~m~~-ar~A~alR~A~~e-~---e~ea~vA~lAi~LGm~dEA 89 (100)
.++...|+.++|.+..+..- ....+.+ +-++|+ ..+...++++.+. | +.-..++.+..++|.+++|
T Consensus 251 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 329 (537)
T 3fp2_A 251 IFHFLKNNLLDAQVLLQESINLHPTPNSYIFLALT-LADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNA 329 (537)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHH-TCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHhcccHHHHHHHHHHHHhcCCCchHHHHHHHH-HHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHH
Confidence 35666788888877666443 2222332 223333 2333445555432 2 2234466666677777777
Q ss_pred hhh
Q psy14933 90 YSA 92 (100)
Q Consensus 90 ~~~ 92 (100)
.+.
T Consensus 330 ~~~ 332 (537)
T 3fp2_A 330 KED 332 (537)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 104
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=35.00 E-value=73 Score=24.75 Aligned_cols=45 Identities=22% Similarity=0.181 Sum_probs=34.8
Q ss_pred HHHhhcCCHHHHHHHhHhHH------------HHHHHHHHhhcccchHHHHHHHHHh
Q psy14933 23 SYYLNTGDLDQAFKSIAFIT------------RLDVACICLGNMRDIQGIWTLRYAQ 67 (100)
Q Consensus 23 s~~Lt~GnmD~Afkaik~Ik------------RlDVA~vCLG~m~~ar~A~alR~A~ 67 (100)
.||+..||.++|.++..-+. -+.+.++|+-.......-.-+.+|+
T Consensus 139 ~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 139 EYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp HHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 68889999999999998666 4556777877666666666777775
No 105
>3axj_B TRAX, translin associated factor X, isoform B; translin/TRAX heterodimer, passenger RNA cleavage, RNAse, DN protein; 2.10A {Drosophila melanogaster} PDB: 3riu_C
Probab=34.64 E-value=57 Score=25.22 Aligned_cols=42 Identities=12% Similarity=0.136 Sum_probs=35.8
Q ss_pred HhhcCCHHHHHHHhHhHH-------------------HHHHHHHHhhcccchHHHHHHHHH
Q psy14933 25 YLNTGDLDQAFKSIAFIT-------------------RLDVACICLGNMRDIQGIWTLRYA 66 (100)
Q Consensus 25 ~Lt~GnmD~Afkaik~Ik-------------------RlDVA~vCLG~m~~ar~A~alR~A 66 (100)
.++.||++.+++..+.++ |+|+.+.++-|++++.=...+|-.
T Consensus 216 sv~~Gd~~~~~~i~~fm~~Ly~gf~~Lnlkn~~~LRKK~D~lk~svkKvE~v~Ydl~vRg~ 276 (298)
T 3axj_B 216 SLGSGDTDTCLDTCKALQHFYSGYISLNCQRARELWRKITTMKQSVLKAENVCYNVKVRGG 276 (298)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHTCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHhccchHhHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHheecCC
Confidence 368899999999888877 899999999999998777777763
No 106
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=34.52 E-value=1.3e+02 Score=21.59 Aligned_cols=69 Identities=14% Similarity=0.078 Sum_probs=41.6
Q ss_pred HHhhcCCHHHHHHHhHhHH---------HHHHHHHHhhcccchH-HHHHHHHHhhC-c---hHHHHHHHHHHHhcchhhh
Q psy14933 24 YYLNTGDLDQAFKSIAFIT---------RLDVACICLGNMRDIQ-GIWTLRYAQAE-P---ELEARVAALAIHLQLYVSD 89 (100)
Q Consensus 24 ~~Lt~GnmD~Afkaik~Ik---------RlDVA~vCLG~m~~ar-~A~alR~A~~e-~---e~ea~vA~lAi~LGm~dEA 89 (100)
.|...|+.++|.+..+..- ....+. |+-++|+.. +...++++.+. | +.-..++.+...+|.+++|
T Consensus 313 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 391 (514)
T 2gw1_A 313 MNFILQNYDQAGKDFDKAKELDPENIFPYIQLAC-LAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKA 391 (514)
T ss_dssp HHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHH-HTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHH
Confidence 4566788888887776443 333333 334455543 33445555432 2 3345578888889999988
Q ss_pred hhhc
Q psy14933 90 YSAA 93 (100)
Q Consensus 90 ~~~a 93 (100)
.+..
T Consensus 392 ~~~~ 395 (514)
T 2gw1_A 392 LKQY 395 (514)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7653
No 107
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=34.01 E-value=36 Score=29.89 Aligned_cols=32 Identities=19% Similarity=0.240 Sum_probs=24.4
Q ss_pred cCHHHHHHHH--HHHHHhhcCCHHHHHHHhHhHH
Q psy14933 11 CDEVTRSAVI--NFSYYLNTGDLDQAFKSIAFIT 42 (100)
Q Consensus 11 ~D~~tr~All--~Fs~~Lt~GnmD~Afkaik~Ik 42 (100)
.|+..+..+. =|.++|.+|+.|+||.++-...
T Consensus 932 ~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~p 965 (1139)
T 4fhn_B 932 DDEDLSIAITHETLKTACAAGKFDAAHVALMVLS 965 (1139)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHH
T ss_pred CChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCC
Confidence 3454444443 3999999999999999997665
No 108
>3axj_A GM27569P, translin; translin/TRAX heterodimer, passenger RNA cleavage, RNAse, DN protein; 2.10A {Drosophila melanogaster} PDB: 2qva_A 2qrx_A 3riu_A
Probab=34.01 E-value=32 Score=25.95 Aligned_cols=43 Identities=16% Similarity=0.233 Sum_probs=37.1
Q ss_pred HhhcCCHHHHHHHhHhHH------------------HHHHHHHHhhcccchHHHHHHHHHh
Q psy14933 25 YLNTGDLDQAFKSIAFIT------------------RLDVACICLGNMRDIQGIWTLRYAQ 67 (100)
Q Consensus 25 ~Lt~GnmD~Afkaik~Ik------------------RlDVA~vCLG~m~~ar~A~alR~A~ 67 (100)
.++.||.+.+++..+.++ |+|+.+.++-|++++.=...+|...
T Consensus 173 ~v~~Gd~~~~~~i~~fm~~Ly~~f~~Ln~~n~~LRkK~D~lk~sv~KvE~v~Ydl~vRg~~ 233 (249)
T 3axj_A 173 SVTMGDYERPLNISHFIGDLNTGFRLLNLKNDGLRKRFDALKYDVKKIEEVVYDVSIRGLS 233 (249)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHhcCChHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 467899999998888777 9999999999999988777788763
No 109
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=33.61 E-value=1e+02 Score=20.23 Aligned_cols=16 Identities=6% Similarity=-0.041 Sum_probs=9.9
Q ss_pred HHHHHHHhcchhhhhh
Q psy14933 76 VAALAIHLQLYVSDYS 91 (100)
Q Consensus 76 vA~lAi~LGm~dEA~~ 91 (100)
.+..-..+|.+++|++
T Consensus 163 ~g~~~~~~~~~~~A~~ 178 (208)
T 3urz_A 163 DGLSKLFTTRYEKARN 178 (208)
T ss_dssp HHHHHHHHHTHHHHHH
T ss_pred HHHHHHHccCHHHHHH
Confidence 4555556667777765
No 110
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Probab=33.23 E-value=85 Score=19.33 Aligned_cols=45 Identities=13% Similarity=0.258 Sum_probs=32.4
Q ss_pred ccCHHHHHHHHHHHHH----hhcCCHHHHHHHhHhHHHHHHHHHHhhcc
Q psy14933 10 CCDEVTRSAVINFSYY----LNTGDLDQAFKSIAFITRLDVACICLGNM 54 (100)
Q Consensus 10 ~~D~~tr~All~Fs~~----Lt~GnmD~Afkaik~IkRlDVA~vCLG~m 54 (100)
+.++.+-+.+++|-|. ++..|+.+-+.+-...+-.++...|-..|
T Consensus 66 ~~~~~~f~~ll~~~Yt~~~~~~~~~v~~ll~~A~~~~i~~L~~~C~~~l 114 (116)
T 2vpk_A 66 QVKADGFQKLLEFIYTGTLNLDSWNVKEIHQAADYLKVEEVVTKCKIKM 114 (116)
T ss_dssp TCCHHHHHHHHHHHHHSCCCCCTTTHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 7889999999999997 55566666666666555556666675443
No 111
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=32.86 E-value=91 Score=19.50 Aligned_cols=68 Identities=7% Similarity=-0.144 Sum_probs=32.8
Q ss_pred HhhcCCHHHHHHHhHhHH---------HHHHHHHHhhcccchHHHHHHHHHhh-Cch-HH--HHHHHHHHHhcchhhhhh
Q psy14933 25 YLNTGDLDQAFKSIAFIT---------RLDVACICLGNMRDIQGIWTLRYAQA-EPE-LE--ARVAALAIHLQLYVSDYS 91 (100)
Q Consensus 25 ~Lt~GnmD~Afkaik~Ik---------RlDVA~vCLG~m~~ar~A~alR~A~~-e~e-~e--a~vA~lAi~LGm~dEA~~ 91 (100)
+.+.|++|+|..+++..- .+.+|.+....=....+...+++|.+ +|+ .+ ..+|.+-.++|.+++|++
T Consensus 7 ~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~ 86 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVE 86 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHH
Confidence 344566666655554322 44555444332222334444555542 232 22 336666666666666654
Q ss_pred h
Q psy14933 92 A 92 (100)
Q Consensus 92 ~ 92 (100)
.
T Consensus 87 ~ 87 (150)
T 4ga2_A 87 C 87 (150)
T ss_dssp H
T ss_pred H
Confidence 3
No 112
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=32.84 E-value=1e+02 Score=20.09 Aligned_cols=18 Identities=17% Similarity=0.036 Sum_probs=12.3
Q ss_pred HHHHHHHHhcchhhhhhh
Q psy14933 75 RVAALAIHLQLYVSDYSA 92 (100)
Q Consensus 75 ~vA~lAi~LGm~dEA~~~ 92 (100)
.++.+-..+|.+++|.+.
T Consensus 268 ~la~~~~~~g~~~~A~~~ 285 (338)
T 3ro2_A 268 SLGNTYTLLQDYEKAIDY 285 (338)
T ss_dssp HHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHH
Confidence 356667777777777654
No 113
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=32.58 E-value=1.3e+02 Score=22.84 Aligned_cols=18 Identities=17% Similarity=0.041 Sum_probs=11.3
Q ss_pred HHHHHHHHhcchhhhhhh
Q psy14933 75 RVAALAIHLQLYVSDYSA 92 (100)
Q Consensus 75 ~vA~lAi~LGm~dEA~~~ 92 (100)
.+|.+-.++|.+++|.+.
T Consensus 263 ~lg~~~~~~g~~~~A~~~ 280 (474)
T 4abn_A 263 NRATLHKYEESYGEALEG 280 (474)
T ss_dssp HHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHH
Confidence 366666666777766553
No 114
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=32.14 E-value=69 Score=17.84 Aligned_cols=18 Identities=22% Similarity=0.525 Sum_probs=13.1
Q ss_pred HHhhcCCHHHHHHHhHhH
Q psy14933 24 YYLNTGDLDQAFKSIAFI 41 (100)
Q Consensus 24 ~~Lt~GnmD~Afkaik~I 41 (100)
-++..|+.++|.+..+..
T Consensus 9 ~~~~~~~~~~A~~~~~~a 26 (99)
T 2kc7_A 9 ELINQGDIENALQALEEF 26 (99)
T ss_dssp HHHHHTCHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHH
Confidence 356788999888877643
No 115
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=32.06 E-value=75 Score=18.25 Aligned_cols=19 Identities=11% Similarity=-0.146 Sum_probs=14.2
Q ss_pred HHHHHHHHhcchhhhhhhc
Q psy14933 75 RVAALAIHLQLYVSDYSAA 93 (100)
Q Consensus 75 ~vA~lAi~LGm~dEA~~~a 93 (100)
.++.+..++|.+++|.+..
T Consensus 134 ~la~~~~~~g~~~~A~~~~ 152 (164)
T 3ro3_A 134 SLGNAYTALGNHDQAMHFA 152 (164)
T ss_dssp HHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHH
Confidence 4677778888888887653
No 116
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=30.73 E-value=1e+02 Score=19.41 Aligned_cols=68 Identities=7% Similarity=0.124 Sum_probs=42.6
Q ss_pred HHhhcCCHHHHHHHhHhHH------HHHHHHHHhhcccch-HHHHHHHHHhhC-c---hHHHHHHHHHHHhcchhhhhhh
Q psy14933 24 YYLNTGDLDQAFKSIAFIT------RLDVACICLGNMRDI-QGIWTLRYAQAE-P---ELEARVAALAIHLQLYVSDYSA 92 (100)
Q Consensus 24 ~~Lt~GnmD~Afkaik~Ik------RlDVA~vCLG~m~~a-r~A~alR~A~~e-~---e~ea~vA~lAi~LGm~dEA~~~ 92 (100)
.+...|+.++|.+..+..- ....+.+ +-++|+. .+...+++|.+. | +.-..+|.+-..+|.+++|.+.
T Consensus 15 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~-~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~ 93 (213)
T 1hh8_A 15 LAADKKDWKGALDAFSAVQDPHSRICFNIGCM-YTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKD 93 (213)
T ss_dssp HHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHcCCChHHHHHHHHH-HHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHHHHHH
Confidence 3457899999988776432 3334433 3344444 344556666533 3 2334588888999999999865
No 117
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=29.28 E-value=59 Score=20.30 Aligned_cols=23 Identities=4% Similarity=-0.125 Sum_probs=13.2
Q ss_pred HHhhcccchHHHHHHHHHhhCch
Q psy14933 49 ICLGNMRDIQGIWTLRYAQAEPE 71 (100)
Q Consensus 49 vCLG~m~~ar~A~alR~A~~e~e 71 (100)
..||++++..+...|.+..++++
T Consensus 95 ~aL~~~~~~~a~~~L~~~l~d~~ 117 (131)
T 1te4_A 95 RSLEQIGGERVRAAMEKLAETGT 117 (131)
T ss_dssp HHHHHHCSHHHHHHHHHHTTSCC
T ss_pred HHHHHhCcHHHHHHHHHHHhCCC
Confidence 44666666655556666555543
No 118
>1xju_A Lysozyme; secreted inactive conformation, hydrolase; 1.07A {Enterobacteria phage P1} SCOP: d.2.1.3
Probab=28.99 E-value=22 Score=24.90 Aligned_cols=22 Identities=14% Similarity=0.149 Sum_probs=18.4
Q ss_pred ccCHHHHHHHHHHHHHhhcCCH
Q psy14933 10 CCDEVTRSAVINFSYYLNTGDL 31 (100)
Q Consensus 10 ~~D~~tr~All~Fs~~Lt~Gnm 31 (100)
..++...+||.+|+|++-.|++
T Consensus 72 ~l~q~q~dALvSfayNvG~g~~ 93 (163)
T 1xju_A 72 DMPDNAFSAMTSAAFNMGCNSL 93 (163)
T ss_dssp GSCHHHHHHHHHHHHHHCHHHH
T ss_pred CCCHHHHHHHHHHHHhcCcchh
Confidence 5678899999999999987643
No 119
>2o4w_A Lysozyme; protein folding, protein stability, protein engineering, hydrolase; 1.90A {Enterobacteria phage T4}
Probab=28.54 E-value=22 Score=25.04 Aligned_cols=23 Identities=26% Similarity=0.507 Sum_probs=19.0
Q ss_pred cccCHHHHHHHHHHHHHhhcCCH
Q psy14933 9 ECCDEVTRSAVINFSYYLNTGDL 31 (100)
Q Consensus 9 e~~D~~tr~All~Fs~~Lt~Gnm 31 (100)
...++....||.+|+|++-.|++
T Consensus 78 v~l~q~q~dALvSfafNvG~g~~ 100 (171)
T 2o4w_A 78 DSLDAVRRAALINMVFQMGETGV 100 (171)
T ss_dssp HHSCHHHHHHHHHHHHHHCHHHH
T ss_pred cCCCHHHHHHHHHHHHhcCcccc
Confidence 35678899999999999987644
No 120
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=28.20 E-value=1.2e+02 Score=19.35 Aligned_cols=19 Identities=0% Similarity=0.011 Sum_probs=13.3
Q ss_pred HHHHHHHHHhcchhhhhhh
Q psy14933 74 ARVAALAIHLQLYVSDYSA 92 (100)
Q Consensus 74 a~vA~lAi~LGm~dEA~~~ 92 (100)
-..|.+-.++|.+++|.+.
T Consensus 126 ~~lg~~~~~~~~~~~A~~~ 144 (198)
T 2fbn_A 126 YKLGVANMYFGFLEEAKEN 144 (198)
T ss_dssp HHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHH
Confidence 4467777778888777654
No 121
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=28.11 E-value=1.3e+02 Score=19.65 Aligned_cols=68 Identities=6% Similarity=-0.094 Sum_probs=36.5
Q ss_pred HHhhcCCHHHHHHHhHhHH-------------HHHHHHHHhhcccchH-HHHHHHHHhhC------chH----HHHHHHH
Q psy14933 24 YYLNTGDLDQAFKSIAFIT-------------RLDVACICLGNMRDIQ-GIWTLRYAQAE------PEL----EARVAAL 79 (100)
Q Consensus 24 ~~Lt~GnmD~Afkaik~Ik-------------RlDVA~vCLG~m~~ar-~A~alR~A~~e------~e~----ea~vA~l 79 (100)
.++..|+.++|.+..+..- ....+.++ -++|+.. +...++++.+- +.. -..++.+
T Consensus 14 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~ 92 (338)
T 3ro2_A 14 RLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAY-FYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNT 92 (338)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 4567888888887776433 11222222 2333332 23333333221 211 2346777
Q ss_pred HHHhcchhhhhhh
Q psy14933 80 AIHLQLYVSDYSA 92 (100)
Q Consensus 80 Ai~LGm~dEA~~~ 92 (100)
...+|.+++|.+.
T Consensus 93 ~~~~g~~~~A~~~ 105 (338)
T 3ro2_A 93 LKVLGNFDEAIVC 105 (338)
T ss_dssp HHHTTCHHHHHHH
T ss_pred HHHccCHHHHHHH
Confidence 8888999988865
No 122
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=26.78 E-value=1.4e+02 Score=22.70 Aligned_cols=68 Identities=10% Similarity=-0.009 Sum_probs=36.5
Q ss_pred HhhcCCH-HHHHHHhHhHH---------HHHHHHHHhhcccch-HHHHHHHHHhhC-chHH--HHHHHHHHHh-------
Q psy14933 25 YLNTGDL-DQAFKSIAFIT---------RLDVACICLGNMRDI-QGIWTLRYAQAE-PELE--ARVAALAIHL------- 83 (100)
Q Consensus 25 ~Lt~Gnm-D~Afkaik~Ik---------RlDVA~vCLG~m~~a-r~A~alR~A~~e-~e~e--a~vA~lAi~L------- 83 (100)
+...|+. ++|.+..+-.- ....|.++. .+|+. .+...+++|.+- |+.+ ..++.+-.++
T Consensus 112 ~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~lg~~~~~~~~~~~~~ 190 (474)
T 4abn_A 112 LNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYW-KKGDVTSAHTCFSGALTHCKNKVSLQNLSMVLRQLQTDSGDE 190 (474)
T ss_dssp HTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCCSCHHH
T ss_pred HHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhccCChhh
Confidence 4567888 88777765332 333333332 33333 344556666543 4322 3356666666
Q ss_pred --cchhhhhhhc
Q psy14933 84 --QLYVSDYSAA 93 (100)
Q Consensus 84 --Gm~dEA~~~a 93 (100)
|.+++|++..
T Consensus 191 ~~g~~~~A~~~~ 202 (474)
T 4abn_A 191 HSRHVMDSVRQA 202 (474)
T ss_dssp HHHHHHHHHHHH
T ss_pred hhhhHHHHHHHH
Confidence 7777777653
No 123
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=26.08 E-value=1.6e+02 Score=20.14 Aligned_cols=69 Identities=7% Similarity=-0.108 Sum_probs=38.3
Q ss_pred HHhhcCCHHHHHHHhHhHH---------------HHHHHHHHhhcccchH-HHHHHHHHh----hCc--h----HHHHHH
Q psy14933 24 YYLNTGDLDQAFKSIAFIT---------------RLDVACICLGNMRDIQ-GIWTLRYAQ----AEP--E----LEARVA 77 (100)
Q Consensus 24 ~~Lt~GnmD~Afkaik~Ik---------------RlDVA~vCLG~m~~ar-~A~alR~A~----~e~--e----~ea~vA 77 (100)
.|...|+.++|.+..+-.- ...+|. |+-.+|+.. +...++++. +.+ . .-..+|
T Consensus 196 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 274 (406)
T 3sf4_A 196 THYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGN-AYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLG 274 (406)
T ss_dssp HHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHH-HHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHH
Confidence 4567899999987665322 122222 223344433 333444443 221 1 123478
Q ss_pred HHHHHhcchhhhhhhc
Q psy14933 78 ALAIHLQLYVSDYSAA 93 (100)
Q Consensus 78 ~lAi~LGm~dEA~~~a 93 (100)
.+..++|.+++|.+..
T Consensus 275 ~~~~~~g~~~~A~~~~ 290 (406)
T 3sf4_A 275 NTYTLLQDYEKAIDYH 290 (406)
T ss_dssp HHHHHTTCHHHHHHHH
T ss_pred HHHHHhCcHHHHHHHH
Confidence 8888999999998753
No 124
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=25.85 E-value=1.7e+02 Score=20.40 Aligned_cols=69 Identities=9% Similarity=-0.034 Sum_probs=39.2
Q ss_pred HHhhcCCHHHHHHHhHhHH---------------HHHHHHHHhhcccch-HHHHHHHHHhhC----c------hHHHHHH
Q psy14933 24 YYLNTGDLDQAFKSIAFIT---------------RLDVACICLGNMRDI-QGIWTLRYAQAE----P------ELEARVA 77 (100)
Q Consensus 24 ~~Lt~GnmD~Afkaik~Ik---------------RlDVA~vCLG~m~~a-r~A~alR~A~~e----~------e~ea~vA 77 (100)
.|+..|+.++|.+..+-.- ...++. |+-++|+. .+...++++.+- + ..-..+|
T Consensus 232 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 310 (411)
T 4a1s_A 232 TYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGN-SHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLG 310 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-HHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHH-HHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4667899999987765332 122222 33344443 333334444322 1 1123478
Q ss_pred HHHHHhcchhhhhhhc
Q psy14933 78 ALAIHLQLYVSDYSAA 93 (100)
Q Consensus 78 ~lAi~LGm~dEA~~~a 93 (100)
.+..++|.+++|.+..
T Consensus 311 ~~~~~~g~~~~A~~~~ 326 (411)
T 4a1s_A 311 NTYTLLHEFNTAIEYH 326 (411)
T ss_dssp HHHHHTTCHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHH
Confidence 8888999999997653
No 125
>1j1j_A Translin; testis/brain RNA binding protein, ssDNA binding protein, RNA protein, DNA binding protein; 2.20A {Homo sapiens} SCOP: a.118.16.1 PDB: 3qb5_A 3pja_A 1key_A
Probab=25.64 E-value=29 Score=25.99 Aligned_cols=42 Identities=17% Similarity=0.207 Sum_probs=36.0
Q ss_pred HhhcCCHHHHHHHhHhHH------------------HHHHHHHHhhcccchHHHHHHHHH
Q psy14933 25 YLNTGDLDQAFKSIAFIT------------------RLDVACICLGNMRDIQGIWTLRYA 66 (100)
Q Consensus 25 ~Lt~GnmD~Afkaik~Ik------------------RlDVA~vCLG~m~~ar~A~alR~A 66 (100)
.++.||.+.+++..+.++ |+|+.+.++-+++++.=...+|-.
T Consensus 170 ~v~~Gd~~~~~~i~~fm~~Ly~~f~~Lnl~n~~LRkK~D~lk~~vkKvE~v~Ydl~vRg~ 229 (240)
T 1j1j_A 170 SVTAGDYSRPLHISTFINELDSGFRLLNLKNDSLRKRYDGLKYDVKKVEEVVYDLSIRGF 229 (240)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHTTHHHHHHHHHHHHHHHHTTTC
T ss_pred HHhcCChHhHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHHheecCC
Confidence 468899999999888887 999999999999998777777665
No 126
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=25.61 E-value=2.1e+02 Score=21.30 Aligned_cols=68 Identities=18% Similarity=0.143 Sum_probs=39.4
Q ss_pred HHhhcCCHHHHHHHhHhHH-------------------------HHHHHHHHhhcccch-HHHHHHHHHhhC-ch---HH
Q psy14933 24 YYLNTGDLDQAFKSIAFIT-------------------------RLDVACICLGNMRDI-QGIWTLRYAQAE-PE---LE 73 (100)
Q Consensus 24 ~~Lt~GnmD~Afkaik~Ik-------------------------RlDVA~vCLG~m~~a-r~A~alR~A~~e-~e---~e 73 (100)
.+...|+.++|.+..+..- ....| .|+-++|+- .+...+++|.+- |+ .-
T Consensus 232 ~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla-~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 310 (370)
T 1ihg_A 232 TFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIG-ACKLKMSDWQGAVDSCLEALEIDPSNTKAL 310 (370)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHTTCTTCHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHH-HHHHhccCHHHHHHHHHHHHHhCchhHHHH
Confidence 4567788888876554221 12233 344455554 344556666643 32 22
Q ss_pred HHHHHHHHHhcchhhhhhh
Q psy14933 74 ARVAALAIHLQLYVSDYSA 92 (100)
Q Consensus 74 a~vA~lAi~LGm~dEA~~~ 92 (100)
-+.|.+-.++|.+++|.+.
T Consensus 311 ~~lg~~~~~~g~~~eA~~~ 329 (370)
T 1ihg_A 311 YRRAQGWQGLKEYDQALAD 329 (370)
T ss_dssp HHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHH
Confidence 4577788888888888753
No 127
>1swy_A Lysozyme; RB+ binding sites, AB initio direct methods, hydrolase; 1.06A {Enterobacteria phage T4} SCOP: d.2.1.3 PDB: 1swz_A 1sx2_A 1sx7_A 3fad_A 3f9l_A 2nzn_A 3c8s_A 3cdr_A 2nzb_A 3c8q_A 3c7w_A 3cdq_A 3f8v_A 1l34_A 3c7y_A 2lzm_A 1t6h_A* 1lyd_A 3lzm_A 4lzm_A ...
Probab=25.55 E-value=47 Score=22.83 Aligned_cols=24 Identities=21% Similarity=0.408 Sum_probs=19.6
Q ss_pred cccCHHHHHHHHHHHHHhhcCCHH
Q psy14933 9 ECCDEVTRSAVINFSYYLNTGDLD 32 (100)
Q Consensus 9 e~~D~~tr~All~Fs~~Lt~GnmD 32 (100)
...++....||.+|+|++-.|++-
T Consensus 89 ~~l~q~q~dALvs~~fN~G~~~~~ 112 (164)
T 1swy_A 89 DSLDAVRECALINMVFQMGETGVA 112 (164)
T ss_dssp HHSCHHHHHHHHHHHHHHCHHHHH
T ss_pred cCCCHHHHHHHHHHHHcCCCcccc
Confidence 356788999999999999887653
No 128
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=25.40 E-value=1.9e+02 Score=22.34 Aligned_cols=67 Identities=13% Similarity=-0.007 Sum_probs=43.6
Q ss_pred HhhcCCHHHHHHHhHhH-H--------HHHHHHHHhhcccch-HHHHHHHHHhhC-c---hHHHHHHHHHHHhcchhhhh
Q psy14933 25 YLNTGDLDQAFKSIAFI-T--------RLDVACICLGNMRDI-QGIWTLRYAQAE-P---ELEARVAALAIHLQLYVSDY 90 (100)
Q Consensus 25 ~Lt~GnmD~Afkaik~I-k--------RlDVA~vCLG~m~~a-r~A~alR~A~~e-~---e~ea~vA~lAi~LGm~dEA~ 90 (100)
+...|+.++|.+..+.. + ....|.+ +-++|+- .+...+++|.+- | +.--.+|.+-.++|.+++|+
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~-~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~ 94 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLA-YLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAAL 94 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHH-HHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 56789999998877632 2 4445544 4445554 344556777654 3 22345888999999999998
Q ss_pred hh
Q psy14933 91 SA 92 (100)
Q Consensus 91 ~~ 92 (100)
+.
T Consensus 95 ~~ 96 (477)
T 1wao_1 95 RD 96 (477)
T ss_dssp HH
T ss_pred HH
Confidence 75
No 129
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=25.39 E-value=2.7e+02 Score=22.48 Aligned_cols=15 Identities=27% Similarity=0.550 Sum_probs=9.1
Q ss_pred HhhcCCHHHHHHHhH
Q psy14933 25 YLNTGDLDQAFKSIA 39 (100)
Q Consensus 25 ~Lt~GnmD~Afkaik 39 (100)
++..|+.++|.+..+
T Consensus 443 ~~~~g~~~~A~~~~~ 457 (681)
T 2pzi_A 443 LLDLGDVAKATRKLD 457 (681)
T ss_dssp HHHHTCHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHH
Confidence 445567776666554
No 130
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus}
Probab=25.37 E-value=1.3e+02 Score=19.33 Aligned_cols=50 Identities=14% Similarity=0.179 Sum_probs=37.0
Q ss_pred CCcccCHHHHHHHHHHHHH----hhcCCHHHHHHHhHhHHHHHHHHHHhhcccc
Q psy14933 7 GIECCDEVTRSAVINFSYY----LNTGDLDQAFKSIAFITRLDVACICLGNMRD 56 (100)
Q Consensus 7 Gle~~D~~tr~All~Fs~~----Lt~GnmD~Afkaik~IkRlDVA~vCLG~m~~ 56 (100)
-|++.++.+-+.+|+|-|. ++..|+.+-+.+-...+--++-..|...+.+
T Consensus 64 ~l~~~~~~~f~~lL~fiYtg~~~i~~~~v~~ll~~A~~l~i~~L~~~C~~~l~~ 117 (135)
T 2yy9_A 64 VLPAGFAEIFGLLLDFFYTGHLALTSGNRDQVLLAAKELRVPEAVELCQSFQPQ 117 (135)
T ss_dssp EECGGGHHHHHHHHHHHHHSCCCCCTTTHHHHHHHHHHTTCHHHHHHHHHCCC-
T ss_pred EeCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 3556788999999999996 5566777777777766666778888776654
No 131
>2anv_A Lysozyme; direct methods, lanthinide binding sites, hydrolase; 1.04A {Enterobacteria phage P22} PDB: 2anx_A
Probab=25.06 E-value=28 Score=23.76 Aligned_cols=22 Identities=5% Similarity=0.137 Sum_probs=18.1
Q ss_pred ccCHHHHHHHHHHHHHhhcCCH
Q psy14933 10 CCDEVTRSAVINFSYYLNTGDL 31 (100)
Q Consensus 10 ~~D~~tr~All~Fs~~Lt~Gnm 31 (100)
..++...+||.+|+|++-.|++
T Consensus 78 ~l~q~q~dALvsf~yNvG~g~~ 99 (146)
T 2anv_A 78 PLNQNQYDAMCSLIFNIGKSAF 99 (146)
T ss_dssp CCCHHHHHHHHHHHHHHCHHHH
T ss_pred CCCHHHHHHHHhhhhccCCCcc
Confidence 4678899999999999987643
No 132
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=25.04 E-value=43 Score=20.91 Aligned_cols=29 Identities=17% Similarity=0.330 Sum_probs=23.7
Q ss_pred cCCcccCHHHHHHHHHHHHHhhcCCHHHH
Q psy14933 6 VGIECCDEVTRSAVINFSYYLNTGDLDQA 34 (100)
Q Consensus 6 ~Gle~~D~~tr~All~Fs~~Lt~GnmD~A 34 (100)
.|.+..++....+|++|-|..+..=..+|
T Consensus 14 ~G~~~~~~~v~~~L~e~~~ry~~~il~dA 42 (68)
T 1taf_A 14 LNVQEYEPRVVNQLLEFTFRYVTSILDDA 42 (68)
T ss_dssp TTCCCBCTHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999998886544443
No 133
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=24.31 E-value=1.5e+02 Score=19.21 Aligned_cols=68 Identities=4% Similarity=-0.004 Sum_probs=40.5
Q ss_pred HHhhcCCHHHHHHHhHhHH---------HHHHHHHHhhcccch-HHHHHHHHHhhCc---hH----HHHHHHHHHHhcch
Q psy14933 24 YYLNTGDLDQAFKSIAFIT---------RLDVACICLGNMRDI-QGIWTLRYAQAEP---EL----EARVAALAIHLQLY 86 (100)
Q Consensus 24 ~~Lt~GnmD~Afkaik~Ik---------RlDVA~vCLG~m~~a-r~A~alR~A~~e~---e~----ea~vA~lAi~LGm~ 86 (100)
.+...|+.++|.+..+.+- ..-.+. |.-++|+- .+...++++.+.| +. -..++.+-..+|.+
T Consensus 12 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~-~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~ 90 (272)
T 3u4t_A 12 FLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAV-CYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQD 90 (272)
T ss_dssp HHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHH-HHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHH-HHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccH
Confidence 4556788888877766432 444454 44455544 3444566666543 11 13577777888888
Q ss_pred hhhhhh
Q psy14933 87 VSDYSA 92 (100)
Q Consensus 87 dEA~~~ 92 (100)
++|.+.
T Consensus 91 ~~A~~~ 96 (272)
T 3u4t_A 91 SLAIQQ 96 (272)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888764
No 134
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=24.17 E-value=1.8e+02 Score=19.96 Aligned_cols=81 Identities=11% Similarity=0.038 Sum_probs=53.5
Q ss_pred CHHHHHHHHH-HHHHhhcCCHHHHHHHhHhHH---------H--H----HHHHHHhhcccchHHHHHHHHHhhC----ch
Q psy14933 12 DEVTRSAVIN-FSYYLNTGDLDQAFKSIAFIT---------R--L----DVACICLGNMRDIQGIWTLRYAQAE----PE 71 (100)
Q Consensus 12 D~~tr~All~-Fs~~Lt~GnmD~Afkaik~Ik---------R--l----DVA~vCLG~m~~ar~A~alR~A~~e----~e 71 (100)
+......+.+ ...++..|+.++|.+.++.+. + + -++.+++++-....+...+++|.+. ++
T Consensus 71 ~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~ 150 (293)
T 3u3w_A 71 DIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGID 150 (293)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSC
T ss_pred cchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhccccc
Confidence 3555555654 778899999999999887654 1 1 2455555443445666777787652 21
Q ss_pred --H----HHHHHHHHHHhcchhhhhhh
Q psy14933 72 --L----EARVAALAIHLQLYVSDYSA 92 (100)
Q Consensus 72 --~----ea~vA~lAi~LGm~dEA~~~ 92 (100)
. --.++.+-..+|.+++|.+.
T Consensus 151 ~~~~~~~~~~lg~~y~~~g~~~~A~~~ 177 (293)
T 3u3w_A 151 VYQNLYIENAIANIYAENGYLKKGIDL 177 (293)
T ss_dssp TTHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 1 23477788889999999764
No 135
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=23.87 E-value=2.3e+02 Score=22.82 Aligned_cols=68 Identities=13% Similarity=-0.051 Sum_probs=41.7
Q ss_pred HHhhcCCHHHHHHHhHhH---------H--------HHHHHHHHhhcccch-HHHHHHHHHhhC-c---hHHHHHHHHHH
Q psy14933 24 YYLNTGDLDQAFKSIAFI---------T--------RLDVACICLGNMRDI-QGIWTLRYAQAE-P---ELEARVAALAI 81 (100)
Q Consensus 24 ~~Lt~GnmD~Afkaik~I---------k--------RlDVA~vCLG~m~~a-r~A~alR~A~~e-~---e~ea~vA~lAi 81 (100)
.-+..|+.++|...++.. + .+..|... -.+|+. .+...++++.+. | +.--..+.+..
T Consensus 400 ~a~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~-~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 478 (681)
T 2pzi_A 400 QATVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRAL-LDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAEL 478 (681)
T ss_dssp HHTTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHH-HHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred hcccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHH-HhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHH
Confidence 337889999998877643 2 34444433 333443 344456666643 3 22344788889
Q ss_pred Hhcchhhhhhh
Q psy14933 82 HLQLYVSDYSA 92 (100)
Q Consensus 82 ~LGm~dEA~~~ 92 (100)
++|.+++|++.
T Consensus 479 ~~g~~~~A~~~ 489 (681)
T 2pzi_A 479 LTGDYDSATKH 489 (681)
T ss_dssp HHTCHHHHHHH
T ss_pred HcCCHHHHHHH
Confidence 99999999764
No 136
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=23.74 E-value=2e+02 Score=20.34 Aligned_cols=69 Identities=13% Similarity=0.134 Sum_probs=40.4
Q ss_pred HHhhcCCHHHHHHHhHh----HH-----------HHHHHHHHhhcccch-HHHHHHHHHhh------C-chH---HHHHH
Q psy14933 24 YYLNTGDLDQAFKSIAF----IT-----------RLDVACICLGNMRDI-QGIWTLRYAQA------E-PEL---EARVA 77 (100)
Q Consensus 24 ~~Lt~GnmD~Afkaik~----Ik-----------RlDVA~vCLG~m~~a-r~A~alR~A~~------e-~e~---ea~vA 77 (100)
.|...|+.++|.+..+. .+ ...++. |..++|+- .+...+++|.+ + |.. -..+|
T Consensus 193 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~-~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 271 (383)
T 3ulq_A 193 NFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGL-CKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLIT 271 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH-HHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHH
Confidence 46678999999875542 22 222222 22334443 34445566655 3 321 24478
Q ss_pred HHHHHhcchhhhhhhc
Q psy14933 78 ALAIHLQLYVSDYSAA 93 (100)
Q Consensus 78 ~lAi~LGm~dEA~~~a 93 (100)
.+-..+|.+++|.+..
T Consensus 272 ~~~~~~g~~~~A~~~~ 287 (383)
T 3ulq_A 272 QIHYKLGKIDKAHEYH 287 (383)
T ss_dssp HHHHHTTCHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHH
Confidence 8888999999998653
No 137
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=23.68 E-value=1.6e+02 Score=19.45 Aligned_cols=67 Identities=12% Similarity=0.009 Sum_probs=41.9
Q ss_pred HhhcCCHHHHHHHhHhHH------------HHHHHHHHhhcccch-HHHHHHHHHhhC-c---h-HHH--HHHHHHHH--
Q psy14933 25 YLNTGDLDQAFKSIAFIT------------RLDVACICLGNMRDI-QGIWTLRYAQAE-P---E-LEA--RVAALAIH-- 82 (100)
Q Consensus 25 ~Lt~GnmD~Afkaik~Ik------------RlDVA~vCLG~m~~a-r~A~alR~A~~e-~---e-~ea--~vA~lAi~-- 82 (100)
++..|+.++|....+.+- ....|.++ -++|+- .+...++++.+. | . .++ .++..-..
T Consensus 25 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~-~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~ 103 (261)
T 3qky_A 25 FYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAY-YQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLS 103 (261)
T ss_dssp HHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHC
T ss_pred HHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHH-HHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhc
Confidence 456899999998887543 34444444 444544 555667777653 3 1 233 35666666
Q ss_pred ------hcchhhhhhh
Q psy14933 83 ------LQLYVSDYSA 92 (100)
Q Consensus 83 ------LGm~dEA~~~ 92 (100)
+|.+++|.+.
T Consensus 104 ~~~~~~~~~~~~A~~~ 119 (261)
T 3qky_A 104 PPYELDQTDTRKAIEA 119 (261)
T ss_dssp CCTTSCCHHHHHHHHH
T ss_pred ccccccchhHHHHHHH
Confidence 8999998764
No 138
>1xjt_A Lysozyme; open conformation, hydrolase; HET: CIT; 1.75A {Enterobacteria phage P1} SCOP: d.2.1.3
Probab=23.55 E-value=32 Score=24.92 Aligned_cols=23 Identities=13% Similarity=0.138 Sum_probs=19.1
Q ss_pred ccCHHHHHHHHHHHHHhhcCCHH
Q psy14933 10 CCDEVTRSAVINFSYYLNTGDLD 32 (100)
Q Consensus 10 ~~D~~tr~All~Fs~~Lt~GnmD 32 (100)
..++...+||.+|+|++-.|++-
T Consensus 100 ~l~q~q~dALvSfayNvG~g~~~ 122 (191)
T 1xjt_A 100 DMPDNAFSAMTSAAFNMGCNSLR 122 (191)
T ss_dssp GSCHHHHHHHHHHHHHHCHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCcchhc
Confidence 56788999999999999876543
No 139
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=23.34 E-value=1.6e+02 Score=19.22 Aligned_cols=87 Identities=15% Similarity=0.001 Sum_probs=50.1
Q ss_pred cCCcccCHHHHHHHHHHH-HHhhcCCHHHHHHHhHhHHH-----------------HHHHHHHhhcccchH-HHHHHHHH
Q psy14933 6 VGIECCDEVTRSAVINFS-YYLNTGDLDQAFKSIAFITR-----------------LDVACICLGNMRDIQ-GIWTLRYA 66 (100)
Q Consensus 6 ~Gle~~D~~tr~All~Fs-~~Lt~GnmD~Afkaik~IkR-----------------lDVA~vCLG~m~~ar-~A~alR~A 66 (100)
-+....++....++.+.. .+...|+.++|.+..+..-+ ..++. |+-.+|+.. +...++++
T Consensus 17 q~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~-~~~~~g~~~~A~~~~~~a 95 (311)
T 3nf1_A 17 QGGGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILAL-VYRDQNKYKDAANLLNDA 95 (311)
T ss_dssp SSSCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHH-HHHHTTCHHHHHHHHHHH
T ss_pred cCCCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-HHHHCCCHHHHHHHHHHH
Confidence 344455666666766654 57789999999876653321 12222 233344433 33334444
Q ss_pred hhC---------ch---HHHHHHHHHHHhcchhhhhhhc
Q psy14933 67 QAE---------PE---LEARVAALAIHLQLYVSDYSAA 93 (100)
Q Consensus 67 ~~e---------~e---~ea~vA~lAi~LGm~dEA~~~a 93 (100)
.+- |. .-..++.+...+|.+++|.+..
T Consensus 96 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 134 (311)
T 3nf1_A 96 LAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLC 134 (311)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 322 22 2344778888899999998753
No 140
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=22.73 E-value=1.4e+02 Score=18.30 Aligned_cols=18 Identities=17% Similarity=-0.140 Sum_probs=12.0
Q ss_pred HHHHHHHHHhcchhhhhh
Q psy14933 74 ARVAALAIHLQLYVSDYS 91 (100)
Q Consensus 74 a~vA~lAi~LGm~dEA~~ 91 (100)
-+.|.+-.++|.+++|.+
T Consensus 101 ~~~g~~~~~~g~~~~A~~ 118 (162)
T 3rkv_A 101 FRRAKARIAAWKLDEAEE 118 (162)
T ss_dssp HHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhcHHHHHH
Confidence 346666677777777764
No 141
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=22.66 E-value=1.6e+02 Score=19.01 Aligned_cols=23 Identities=22% Similarity=0.251 Sum_probs=11.0
Q ss_pred HHhhcccchHHHHHHHHHhhCch
Q psy14933 49 ICLGNMRDIQGIWTLRYAQAEPE 71 (100)
Q Consensus 49 vCLG~m~~ar~A~alR~A~~e~e 71 (100)
.+||++++..+...|.++.++++
T Consensus 67 ~~L~~~~~~~~~~~L~~~l~d~~ 89 (201)
T 3ltj_A 67 DALGQIGDERAVEPLIKALKDED 89 (201)
T ss_dssp HHHHHHCCGGGHHHHHHHTTCSS
T ss_pred HHHHhhCCHHHHHHHHHHHcCCC
Confidence 34455554444444444444443
No 142
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=22.62 E-value=77 Score=19.30 Aligned_cols=35 Identities=14% Similarity=-0.100 Sum_probs=19.4
Q ss_pred hHHHHHHHHHhhC-ch-HHHH--HHHHHHHhcchhhhhh
Q psy14933 57 IQGIWTLRYAQAE-PE-LEAR--VAALAIHLQLYVSDYS 91 (100)
Q Consensus 57 ar~A~alR~A~~e-~e-~ea~--vA~lAi~LGm~dEA~~ 91 (100)
..+...+++|.+- |. ..+. ++..+.+.|-+++|..
T Consensus 26 ~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~ 64 (93)
T 3bee_A 26 DEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAID 64 (93)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 3444555555533 32 2333 5667777777777765
No 143
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=22.58 E-value=79 Score=20.76 Aligned_cols=23 Identities=22% Similarity=0.251 Sum_probs=11.1
Q ss_pred HHhhcccchHHHHHHHHHhhCch
Q psy14933 49 ICLGNMRDIQGIWTLRYAQAEPE 71 (100)
Q Consensus 49 vCLG~m~~ar~A~alR~A~~e~e 71 (100)
.+||++++..+...|.+..++++
T Consensus 72 ~aL~~~~~~~~~~~L~~~l~~~~ 94 (211)
T 3ltm_A 72 DALGQIGDERAVEPLIKALKDED 94 (211)
T ss_dssp HHHHHHCCGGGHHHHHHHTTCSS
T ss_pred HHHHhhCCHHHHHHHHHHHcCCC
Confidence 34455555444445555444443
No 144
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=21.41 E-value=2.2e+02 Score=20.13 Aligned_cols=69 Identities=12% Similarity=0.033 Sum_probs=39.5
Q ss_pred HHhhcCCHHHHHHHhH----hHH-----------HHHHHHHHhhcccch-HHHHHHHHHhh-----C-chH---HHHHHH
Q psy14933 24 YYLNTGDLDQAFKSIA----FIT-----------RLDVACICLGNMRDI-QGIWTLRYAQA-----E-PEL---EARVAA 78 (100)
Q Consensus 24 ~~Lt~GnmD~Afkaik----~Ik-----------RlDVA~vCLG~m~~a-r~A~alR~A~~-----e-~e~---ea~vA~ 78 (100)
.|...|+.++|....+ ..+ ...++. |.-++|+- .+...+++|.+ . |.. -..+|.
T Consensus 191 ~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~-~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 269 (378)
T 3q15_A 191 NYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIAN-SYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSW 269 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHH
Confidence 3567899999976543 222 112222 22233433 34455666654 3 322 234788
Q ss_pred HHHHhcchhhhhhhc
Q psy14933 79 LAIHLQLYVSDYSAA 93 (100)
Q Consensus 79 lAi~LGm~dEA~~~a 93 (100)
+-.++|.+++|.+..
T Consensus 270 ~~~~~g~~~~A~~~~ 284 (378)
T 3q15_A 270 TLCKAGQTQKAFQFI 284 (378)
T ss_dssp HHHHTTCHHHHHHHH
T ss_pred HHHHCCCHHHHHHHH
Confidence 888999999997653
No 145
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}
Probab=21.27 E-value=1.6e+02 Score=18.32 Aligned_cols=48 Identities=15% Similarity=0.199 Sum_probs=33.6
Q ss_pred CcccCHHHHHHHHHHHHH----hhcCCHHHHHHHhHhHHHHHHHHHHhhccc
Q psy14933 8 IECCDEVTRSAVINFSYY----LNTGDLDQAFKSIAFITRLDVACICLGNMR 55 (100)
Q Consensus 8 le~~D~~tr~All~Fs~~----Lt~GnmD~Afkaik~IkRlDVA~vCLG~m~ 55 (100)
+++.++.+-+.+|+|-|. ++..|+.+-+.+-...+-.++-..|-..+.
T Consensus 64 l~~~~~~~f~~ll~~iYtg~~~~~~~~v~~ll~~A~~~~i~~L~~~C~~~l~ 115 (119)
T 3b84_A 64 LPAGFAEIFGLLLDFFYTGHLALTSGNRDQVLLAARELRVPEAVELCQSFKP 115 (119)
T ss_dssp ECGGGHHHHHHHHHHHHHSCCCCCTTTHHHHHHHHHHTTCHHHHHHHHHCC-
T ss_pred eCCCCHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 557788999999999996 455666666666665555666777765554
No 146
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=20.41 E-value=45 Score=25.68 Aligned_cols=21 Identities=24% Similarity=0.420 Sum_probs=18.1
Q ss_pred HHHHhhcCCHHHHHHHhHhHH
Q psy14933 22 FSYYLNTGDLDQAFKSIAFIT 42 (100)
Q Consensus 22 Fs~~Lt~GnmD~Afkaik~Ik 42 (100)
..=|+..||++||.++|+-++
T Consensus 173 L~EY~~~~D~~EA~~ci~EL~ 193 (307)
T 2zu6_B 173 LKEYLLSGDISEAEHCLKELE 193 (307)
T ss_dssp HHHHHHHCCHHHHHHHHHHHC
T ss_pred HHHHHcCCCHHHHHHHHHHcC
Confidence 556788899999999999776
No 147
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=20.38 E-value=2e+02 Score=23.55 Aligned_cols=66 Identities=11% Similarity=-0.008 Sum_probs=40.7
Q ss_pred hcCCHHHHHHHhHhHHHHHHHHHHhhcccchHH-HHHHHHHhhCchHHHHHHHHHHHhcchhhhhhhc
Q psy14933 27 NTGDLDQAFKSIAFITRLDVACICLGNMRDIQG-IWTLRYAQAEPELEARVAALAIHLQLYVSDYSAA 93 (100)
Q Consensus 27 t~GnmD~Afkaik~IkRlDVA~vCLG~m~~ar~-A~alR~A~~e~e~ea~vA~lAi~LGm~dEA~~~a 93 (100)
..|+.++|-..-..+.-.---..|+.++|+-.+ ..+.|+|. +|+.=-.+...++.+|.++.|....
T Consensus 134 ~~g~yeeA~~~Y~~a~n~~~LA~~L~~Lg~yq~AVea~~KA~-~~~~Wk~v~~aCv~~~ef~lA~~~~ 200 (449)
T 1b89_A 134 DEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKAN-STRTWKEVCFACVDGKEFRLAQMCG 200 (449)
T ss_dssp ---CTTTHHHHHHHTTCHHHHHHHHHTTTCHHHHHHHHHHHT-CHHHHHHHHHHHHHTTCHHHHHHTT
T ss_pred HcCCHHHHHHHHHHhhhHHHHHHHHHHhccHHHHHHHHHHcC-CchhHHHHHHHHHHcCcHHHHHHHH
Confidence 356666665555555511112457888886544 45677773 5555567889999999999996544
No 148
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=20.34 E-value=2.2e+02 Score=19.68 Aligned_cols=11 Identities=9% Similarity=-0.124 Sum_probs=4.5
Q ss_pred HHhcchhhhhh
Q psy14933 81 IHLQLYVSDYS 91 (100)
Q Consensus 81 i~LGm~dEA~~ 91 (100)
...|..++|.+
T Consensus 252 ~~~g~~~~a~~ 262 (308)
T 2ond_A 252 SNIGDLASILK 262 (308)
T ss_dssp HHHSCHHHHHH
T ss_pred HHcCCHHHHHH
Confidence 33444444433
No 149
>2qb0_B Telsam domain - lysozyme chimera; helical polymer, hydrolase regulator; 2.56A {Escherichia coli}
Probab=20.20 E-value=40 Score=24.97 Aligned_cols=23 Identities=26% Similarity=0.463 Sum_probs=19.6
Q ss_pred cccCHHHHHHHHHHHHHhhcCCH
Q psy14933 9 ECCDEVTRSAVINFSYYLNTGDL 31 (100)
Q Consensus 9 e~~D~~tr~All~Fs~~Lt~Gnm 31 (100)
...++....||.+|+|++-.|++
T Consensus 168 ~~l~q~q~dALvSfafNvG~g~~ 190 (241)
T 2qb0_B 168 DSLDCVRRAALINMVFQMGETGV 190 (241)
T ss_dssp HHSCHHHHHHHHHHHHHHCHHHH
T ss_pred cCCCHHHHHHHHHHHHhcccchh
Confidence 35678899999999999988765
Done!