RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy14933
         (100 letters)



>gnl|CDD|177203 MTH00145, CYTB, cytochrome b; Provisional.
          Length = 379

 Score = 29.5 bits (67), Expect = 0.24
 Identities = 13/41 (31%), Positives = 16/41 (39%), Gaps = 12/41 (29%)

Query: 28 TGDLDQAFKSIAFITRLDVACICLGNMRDIQGIWTLRYAQA 68
          T  +D AF S+  I            MRD+   W LR   A
Sbjct: 57 TAHVDLAFSSVIHI------------MRDVNYGWLLRSLHA 85


>gnl|CDD|177102 MTH00016, CYTB, cytochrome b; Validated.
          Length = 378

 Score = 29.3 bits (66), Expect = 0.26
 Identities = 13/41 (31%), Positives = 16/41 (39%), Gaps = 12/41 (29%)

Query: 28 TGDLDQAFKSIAFITRLDVACICLGNMRDIQGIWTLRYAQA 68
          T  +D AF S+A I             RD+   W LR   A
Sbjct: 57 TPHIDLAFSSVAHI------------SRDVNYGWLLRNLHA 85


>gnl|CDD|237524 PRK13826, PRK13826, Dtr system oriT relaxase; Provisional.
          Length = 1102

 Score = 26.3 bits (58), Expect = 3.0
 Identities = 12/28 (42%), Positives = 15/28 (53%)

Query: 61  WTLRYAQAEPELEARVAALAIHLQLYVS 88
           WTLR  Q   +L AR+ A+   L L  S
Sbjct: 798 WTLRQKQKLADLGARLRAIGERLGLAQS 825


>gnl|CDD|236263 PRK08425, flgE, flagellar hook protein FlgE; Validated.
          Length = 731

 Score = 26.2 bits (58), Expect = 3.6
 Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 3/31 (9%)

Query: 53  NMRDIQGIWTLRYAQAEPELEARVAALAIHL 83
           N+R+ QGIW + YA A  ++   +   A +L
Sbjct: 245 NLREGQGIW-VSYADA--KMTKDIVPSAENL 272


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.327    0.139    0.420 

Gapped
Lambda     K      H
   0.267   0.0781    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,053,480
Number of extensions: 412252
Number of successful extensions: 460
Number of sequences better than 10.0: 1
Number of HSP's gapped: 457
Number of HSP's successfully gapped: 13
Length of query: 100
Length of database: 10,937,602
Length adjustment: 66
Effective length of query: 34
Effective length of database: 8,010,238
Effective search space: 272348092
Effective search space used: 272348092
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (24.1 bits)