RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14933
         (100 letters)



>d2bfda1 c.36.1.11 (A:6-400) Branched-chain alpha-keto acid
           dehydrogenase, PP module {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 395

 Score = 25.2 bits (54), Expect = 1.7
 Identities = 10/40 (25%), Positives = 18/40 (45%)

Query: 56  DIQGIWTLRYAQAEPELEARVAALAIHLQLYVSDYSAADF 95
           +   +++  Y +   +L  +  +LA HLQ Y   Y    F
Sbjct: 354 NPNLLFSDVYQEMPAQLRKQQESLARHLQTYGEHYPLDHF 393


>d1pbua_ d.58.46.1 (A:) Elongation factor 1-gamma C-terminal domain
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 162

 Score = 24.7 bits (54), Expect = 2.3
 Identities = 11/47 (23%), Positives = 14/47 (29%), Gaps = 9/47 (19%)

Query: 40  FITRLD------VACICL-GNMRD--IQGIWTLRYAQAEPELEARVA 77
              RLD       A + L G      I G+W  R  +    L     
Sbjct: 70  MFQRLDKLRKNAFASVILFGTNNSSSISGVWVFRGQELAFPLSPDWQ 116


>d1txla_ b.60.1.4 (A:) Hypothetical protein YodA {Escherichia coli
          [TaxId: 562]}
          Length = 188

 Score = 24.0 bits (52), Expect = 3.8
 Identities = 6/15 (40%), Positives = 8/15 (53%)

Query: 25 YLNTGDLDQAFKSIA 39
           L +G LD  F+  A
Sbjct: 40 LLQSGKLDPVFQKKA 54


>d1hc8a_ a.4.7.1 (A:) Ribosomal protein L11, C-terminal domain
          {Bacillus stearothermophilus [TaxId: 1422]}
          Length = 74

 Score = 22.6 bits (49), Expect = 6.9
 Identities = 4/14 (28%), Positives = 7/14 (50%)

Query: 26 LNTGDLDQAFKSIA 39
          LN   ++ A + I 
Sbjct: 50 LNAASIEAAMRMIE 63


>d1mgta2 c.55.7.1 (A:1-88) O6-alkylguanine-DNA alkyltransferase
          {Archaeon Pyrococcus kodakaraensis [TaxId: 311400]}
          Length = 88

 Score = 22.5 bits (48), Expect = 9.7
 Identities = 10/28 (35%), Positives = 13/28 (46%), Gaps = 3/28 (10%)

Query: 57 IQGIWTLRYAQAEPELEARVAALAIHLQ 84
          +QGI    +A     L  R+  LA HL 
Sbjct: 24 VQGI---AFAFDRGTLMKRIHDLAEHLG 48


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.327    0.139    0.420 

Gapped
Lambda     K      H
   0.267   0.0659    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 361,342
Number of extensions: 13647
Number of successful extensions: 77
Number of sequences better than 10.0: 1
Number of HSP's gapped: 77
Number of HSP's successfully gapped: 11
Length of query: 100
Length of database: 2,407,596
Length adjustment: 62
Effective length of query: 38
Effective length of database: 1,556,336
Effective search space: 59140768
Effective search space used: 59140768
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 47 (22.0 bits)