Query psy14934
Match_columns 87
No_of_seqs 109 out of 120
Neff 3.8
Searched_HMMs 29240
Date Fri Aug 16 16:12:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14934.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14934hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1rxt_A Myristoyl-, glycylpepti 99.6 7.9E-17 2.7E-21 132.3 0.0 77 4-86 56-132 (496)
2 3dtp_E RLC, myosin regulatory 56.0 6.1 0.00021 25.9 2.0 17 39-55 52-68 (196)
3 2ksn_A Ubiquitin domain-contai 49.6 3.5 0.00012 29.0 -0.0 9 71-79 43-51 (137)
4 2nud_C RIN4, RPM1-interacting 22.5 23 0.0008 19.5 0.4 8 77-84 5-12 (35)
5 3p8c_D Wiskott-aldrich syndrom 19.4 37 0.0013 25.9 1.1 16 13-28 184-199 (279)
6 1flc_B Haemagglutinin-esterase 10.7 1E+02 0.0034 21.8 1.3 12 71-82 154-165 (175)
7 1w2y_A Deoxyuridine 5'-triphos 9.3 1.1E+02 0.0037 21.9 1.1 12 69-80 54-67 (229)
8 3eo7_A Putative nitroreductase 8.1 1E+02 0.0034 24.3 0.5 10 71-80 30-39 (511)
9 4b2v_A S64; toxin, ICK; NMR {S 6.7 2.6E+02 0.0088 14.8 1.6 15 20-34 2-16 (32)
10 1m48_A Interleukin-2; four-hel 6.5 2.2E+02 0.0074 19.7 1.6 36 39-74 7-45 (133)
No 1
>1rxt_A Myristoyl-, glycylpeptide N-tetradecanoyltransferase 1; alpha-beta structure, unique N-myristoyltransferase fold; 3.00A {Homo sapiens} SCOP: d.108.1.2 d.108.1.2
Probab=99.59 E-value=7.9e-17 Score=132.31 Aligned_cols=77 Identities=45% Similarity=0.617 Sum_probs=0.0
Q ss_pred hHHhHhhhhcCCCCCCccccCCCCCCCcCccCCCCCcccHHHHHHHHHHHhhccCCCCChHHHhcCCCcccCCcCCCCCC
Q psy14934 4 LKKKKQKADEGSGNPSKAVENGGGGEDQATNSEGGVNFSIQEIRKAMEVFSLQQRSAKTPEEALQKQYQFWSTQPVPKIV 83 (87)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~k~k~i~~lL~lLsl~~~~~k~~~~k~~k~yKFW~TQPVPKld 83 (87)
+|+||+|+++++.++ |++..+....+.+++..+.++|+++|++++++++++....++.+++|+||+|||||+||
T Consensus 56 ~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~hkFW~TQPVp~~~ 129 (496)
T 1rxt_A 56 KKKKKQKKKKEKGSE------TDSAQDQPVKMNSLPAERIQEIQKAIELFSVGQGPAKTMEEASKRSYQFWDTQPVPKLG 129 (496)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhHHHhhhhcccCCC------CCccccccccccCCCHHHHHHHHHHHHHHHHhcCcccccccccccCcceeccccCCCCC
Confidence 444444444544444 34555777778889999999999999999998888777778899999999999999999
Q ss_pred cCC
Q psy14934 84 VTI 86 (87)
Q Consensus 84 E~V 86 (87)
|.+
T Consensus 130 e~~ 132 (496)
T 1rxt_A 130 EVV 132 (496)
T ss_dssp ---
T ss_pred Ccc
Confidence 865
No 2
>3dtp_E RLC, myosin regulatory light chain; muscle protein, smooth muscle, myosin subfragment 2, heavy meromyosin, essential light chain; 20.00A {Avicularia avicularia}
Probab=56.00 E-value=6.1 Score=25.89 Aligned_cols=17 Identities=18% Similarity=0.442 Sum_probs=8.8
Q ss_pred CcccHHHHHHHHHHHhh
Q psy14934 39 VNFSIQEIRKAMEVFSL 55 (87)
Q Consensus 39 p~~k~k~i~~lL~lLsl 55 (87)
+......|.++...+..
T Consensus 52 s~~~~~~l~~~F~~~D~ 68 (196)
T 3dtp_E 52 TQHQVQEFKEAFQLIDQ 68 (196)
T ss_dssp CTTTHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHHCC
Confidence 34444555555555543
No 3
>2ksn_A Ubiquitin domain-containing protein 2; UBTD2, DC-UBP, signaling protein; NMR {Homo sapiens}
Probab=49.55 E-value=3.5 Score=29.04 Aligned_cols=9 Identities=44% Similarity=1.132 Sum_probs=7.2
Q ss_pred CcccCCcCC
Q psy14934 71 YQFWSTQPV 79 (87)
Q Consensus 71 yKFW~TQPV 79 (87)
-.||+|+|-
T Consensus 43 ~EFWDT~p~ 51 (137)
T 2ksn_A 43 DEFWDTAPA 51 (137)
T ss_dssp HHHHTTSST
T ss_pred HHHHhcCCc
Confidence 359999993
No 4
>2nud_C RIN4, RPM1-interacting protein 4; AVRB RIN4 high-affinity toxin/protein binding complex; 2.30A {Pseudomonas syringae PV}
Probab=22.49 E-value=23 Score=19.45 Aligned_cols=8 Identities=38% Similarity=0.301 Sum_probs=3.4
Q ss_pred cCCCCCCc
Q psy14934 77 QPVPKIVV 84 (87)
Q Consensus 77 QPVPKldE 84 (87)
-+||+|.|
T Consensus 5 ~~vPkFG~ 12 (35)
T 2nud_C 5 TVVPKFGD 12 (35)
T ss_dssp ----CCSG
T ss_pred CCCCCCCc
Confidence 48999986
No 5
>3p8c_D Wiskott-aldrich syndrome protein family member 1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=19.39 E-value=37 Score=25.91 Aligned_cols=16 Identities=25% Similarity=0.457 Sum_probs=0.8
Q ss_pred cCCCCCCccccCCCCC
Q psy14934 13 EGSGNPSKAVENGGGG 28 (87)
Q Consensus 13 ~~~~~~~~~~~~~~~~ 28 (87)
+..|..++|...||++
T Consensus 184 ~~~~~~~~~~~~~~~~ 199 (279)
T 3p8c_D 184 LDRGGSGGSGGSGGSG 199 (279)
T ss_dssp CC--------------
T ss_pred ccCCCCCCCCCCCCCC
Confidence 3445555554444444
No 6
>1flc_B Haemagglutinin-esterase-fusion glycoprotein; receptor binding, membrane fusion, influenz hydrolase; HET: NDG NAG BMA MAN; 3.20A {Influenza c virus} SCOP: h.3.1.1
Probab=10.67 E-value=1e+02 Score=21.80 Aligned_cols=12 Identities=50% Similarity=0.977 Sum_probs=10.8
Q ss_pred CcccCCcCCCCC
Q psy14934 71 YQFWSTQPVPKI 82 (87)
Q Consensus 71 yKFW~TQPVPKl 82 (87)
|+|=.|-|||.+
T Consensus 154 fkfnetapvpti 165 (175)
T 1flc_B 154 FKFNETAPVPTI 165 (175)
T ss_dssp TTCCCCSCCCCC
T ss_pred hcccCcCCCCCC
Confidence 899999999975
No 7
>1w2y_A Deoxyuridine 5'-triphosphate nucleotide hydrolase; DUTP pyrophosphatase, dimeric, ligand complex, magnesium IONS, pathogen, drug target; HET: DUN; 1.65A {Campylobacter jejuni} SCOP: a.204.1.1 PDB: 2cic_A*
Probab=9.32 E-value=1.1e+02 Score=21.92 Aligned_cols=12 Identities=8% Similarity=0.390 Sum_probs=9.0
Q ss_pred CCCcccCC--cCCC
Q psy14934 69 KQYQFWST--QPVP 80 (87)
Q Consensus 69 k~yKFW~T--QPVP 80 (87)
..+|||++ ||.+
T Consensus 54 ~~wK~WK~~~~~~d 67 (229)
T 1w2y_A 54 FTWKHWKNISSLTN 67 (229)
T ss_dssp SCCCSSSSTTCCCC
T ss_pred hCCcccccCCCCCC
Confidence 56999999 6644
No 8
>3eo7_A Putative nitroreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE FMN; 1.80A {Anabaena variabilis atcc 29413}
Probab=8.07 E-value=1e+02 Score=24.26 Aligned_cols=10 Identities=50% Similarity=0.959 Sum_probs=7.8
Q ss_pred CcccCCcCCC
Q psy14934 71 YQFWSTQPVP 80 (87)
Q Consensus 71 yKFW~TQPVP 80 (87)
+-=|.+||.|
T Consensus 30 ~ldw~~qP~p 39 (511)
T 3eo7_A 30 RLDWAKQPVP 39 (511)
T ss_dssp CCCGGGCCCS
T ss_pred CCCcccCCCc
Confidence 3449999987
No 9
>4b2v_A S64; toxin, ICK; NMR {Sicarius dolichocephalus}
Probab=6.66 E-value=2.6e+02 Score=14.83 Aligned_cols=15 Identities=40% Similarity=0.455 Sum_probs=10.8
Q ss_pred ccccCCCCCCCcCcc
Q psy14934 20 KAVENGGGGEDQATN 34 (87)
Q Consensus 20 ~~~~~~~~~~~~~~~ 34 (87)
..+||||--.|+..+
T Consensus 2 ecvenggfcpdpekm 16 (32)
T 4b2v_A 2 ECVENGGFCPDPEKM 16 (32)
T ss_dssp CCCCTTCBCCCTTTT
T ss_pred chhhcCCcCCChHHh
Confidence 457899987776654
No 10
>1m48_A Interleukin-2; four-helix bundle, small molecule complex, cytokine; HET: FRG; 1.95A {Homo sapiens} SCOP: a.26.1.2 PDB: 1m47_A* 1m49_A* 1m4c_A 1pw6_A* 1z92_A 2b5i_A* 1py2_A* 3ink_C 2erj_D 1qvn_A* 1irl_A 1m4b_A* 1m4a_A* 1nbp_A* 3qb1_A 3qaz_A
Probab=6.54 E-value=2.2e+02 Score=19.73 Aligned_cols=36 Identities=8% Similarity=0.193 Sum_probs=23.6
Q ss_pred CcccHHHHHHHHHHHhh---ccCCCCChHHHhcCCCccc
Q psy14934 39 VNFSIQEIRKAMEVFSL---QQRSAKTPEEALQKQYQFW 74 (87)
Q Consensus 39 p~~k~k~i~~lL~lLsl---~~~~~k~~~~k~~k~yKFW 74 (87)
..+.+++++.+|--|.+ +..+...+.-..|-.|+|.
T Consensus 7 tketqq~leqLLlDLqlLl~gvnN~~n~kL~rMltfKfy 45 (133)
T 1m48_A 7 TKKTQLQLEHLLLDLQMILNGINNYKNPKLTRMLTFKFY 45 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHTTSCBC
T ss_pred hHHHHHHHHHHHHHHHHHHHhccCccCccchhhheeeec
Confidence 45566777777666654 3334455667788999997
Done!