Query psy14934
Match_columns 87
No_of_seqs 109 out of 120
Neff 3.8
Searched_HMMs 13730
Date Fri Aug 16 16:12:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14934.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/14934hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1gz8a_ d.144.1.7 (A:) Cyclin- 21.7 33 0.0024 22.4 3.0 38 44-82 257-296 (298)
2 d1p80a1 c.23.16.3 (A:598-753) 14.0 9.1 0.00066 23.5 -1.5 14 67-80 138-151 (156)
3 d1w2ya_ a.204.1.1 (A:) Type II 11.6 38 0.0028 22.8 1.2 14 69-82 54-68 (229)
4 d3c7ba3 d.134.1.1 (A:167-238,A 8.3 16 0.0011 23.4 -1.9 16 69-84 160-177 (185)
5 d2axtb1 f.55.1.1 (B:2-489) Pho 8.2 47 0.0035 25.5 0.6 15 69-83 357-371 (488)
6 d2v4ja3 d.134.1.1 (A:168-241,A 5.5 89 0.0065 20.0 0.8 19 68-86 161-180 (189)
7 d3blha1 d.144.1.7 (A:8-325) Ce 5.5 1.7E+02 0.012 18.6 2.2 15 67-81 301-315 (318)
8 d1a81a2 d.93.1.1 (A:138-262) S 5.1 1E+02 0.0072 18.2 0.8 7 76-82 119-125 (125)
9 d1xuba1 d.21.1.2 (A:1-128) Phe 4.1 68 0.0049 19.6 -0.6 12 72-83 114-125 (128)
10 d2vgna3 d.79.3.2 (A:278-381) D 3.8 1.5E+02 0.011 17.2 0.9 7 78-84 98-104 (104)
No 1
>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.67 E-value=33 Score=22.36 Aligned_cols=38 Identities=21% Similarity=0.359 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhhccCCCCChHHHhcCCCcccC--CcCCCCC
Q psy14934 44 QEIRKAMEVFSLQQRSAKTPEEALQKQYQFWS--TQPVPKI 82 (87)
Q Consensus 44 k~i~~lL~lLsl~~~~~k~~~~k~~k~yKFW~--TQPVPKl 82 (87)
.++.++|..| |...+...+.-.+.-.|.|-+ ++|||.|
T Consensus 257 ~~~~dll~~m-L~~dP~~R~t~~ell~H~ff~~~~~p~p~~ 296 (298)
T d1gz8a_ 257 EDGRSLLSQM-LHYDPNKRISAKAALAHPFFQDVTKPVPHL 296 (298)
T ss_dssp HHHHHHHHHH-TCSSTTTSCCHHHHHTSGGGTTCCCCCCCC
T ss_pred HHHHHHHHHH-ccCChhHCcCHHHHhCCHhhccCCCCCCCC
Confidence 3445555443 221222223333344566665 8999976
No 2
>d1p80a1 c.23.16.3 (A:598-753) Catalase, C-terminal domain {Escherichia coli, HPII [TaxId: 562]}
Probab=13.99 E-value=9.1 Score=23.50 Aligned_cols=14 Identities=29% Similarity=0.463 Sum_probs=10.6
Q ss_pred hcCCCcccCCcCCC
Q psy14934 67 LQKQYQFWSTQPVP 80 (87)
Q Consensus 67 ~~k~yKFW~TQPVP 80 (87)
.+..|+||+-+|++
T Consensus 138 ~~a~hR~w~Re~~~ 151 (156)
T d1p80a1 138 LMAAHRVWSRIPKI 151 (156)
T ss_dssp HHHTCSCGGGHHHH
T ss_pred HHhcccCccccccc
Confidence 34679999998753
No 3
>d1w2ya_ a.204.1.1 (A:) Type II deoxyuridine triphosphatase {Campylobacter jejuni [TaxId: 197]}
Probab=11.57 E-value=38 Score=22.82 Aligned_cols=14 Identities=7% Similarity=0.392 Sum_probs=10.1
Q ss_pred CCCcccCCc-CCCCC
Q psy14934 69 KQYQFWSTQ-PVPKI 82 (87)
Q Consensus 69 k~yKFW~TQ-PVPKl 82 (87)
..||||++| |-|.+
T Consensus 54 ~~wKwWKk~~~~pD~ 68 (229)
T d1w2ya_ 54 FTWKHWKNISSLTNW 68 (229)
T ss_dssp SCCCSSSSTTCCCCH
T ss_pred hhhHHHhhcCCCCCH
Confidence 469999996 55653
No 4
>d3c7ba3 d.134.1.1 (A:167-238,A:305-417) Dissimilatory sulfite reductase subunit alpha, DsrA {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=8.32 E-value=16 Score=23.45 Aligned_cols=16 Identities=13% Similarity=0.468 Sum_probs=11.5
Q ss_pred CCCcccCCcCC-C-CCCc
Q psy14934 69 KQYQFWSTQPV-P-KIVV 84 (87)
Q Consensus 69 k~yKFW~TQPV-P-KldE 84 (87)
..|-||+.-+| | .++|
T Consensus 160 ~py~~~~~~e~~~~~~~~ 177 (185)
T d3c7ba3 160 NPFMFFEKDELKPSAYTE 177 (185)
T ss_dssp SCCCCCCGGGSCCCHHHH
T ss_pred CCceeechhhcccccccH
Confidence 45999999888 5 3443
No 5
>d2axtb1 f.55.1.1 (B:2-489) Photosystem II core light harvesting protein PsbB {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=8.17 E-value=47 Score=25.50 Aligned_cols=15 Identities=20% Similarity=0.244 Sum_probs=11.4
Q ss_pred CCCcccCCcCCCCCC
Q psy14934 69 KQYQFWSTQPVPKIV 83 (87)
Q Consensus 69 k~yKFW~TQPVPKld 83 (87)
..-.||+|.||+-.|
T Consensus 357 r~~~F~e~~~~~L~~ 371 (488)
T d2axtb1 357 RMPAFFESFPVILTD 371 (488)
T ss_dssp CCCTTCSSCCCEEEC
T ss_pred ecccccccCcceeeC
Confidence 346799999997544
No 6
>d2v4ja3 d.134.1.1 (A:168-241,A:323-437) Dissimilatory sulfite reductase subunit alpha, DsrA {Desulfovibrio vulgaris [TaxId: 881]}
Probab=5.54 E-value=89 Score=20.00 Aligned_cols=19 Identities=26% Similarity=0.448 Sum_probs=14.4
Q ss_pred cCCCcccCCcCCCC-CCcCC
Q psy14934 68 QKQYQFWSTQPVPK-IVVTI 86 (87)
Q Consensus 68 ~k~yKFW~TQPVPK-ldE~V 86 (87)
...|-||+--=||. +|+++
T Consensus 161 ~~py~~~~~~~~~~~~~~~~ 180 (189)
T d2v4ja3 161 TNPYIFFKEEEVPGGWDRDI 180 (189)
T ss_dssp SSCCCCCCGGGSTTCSCCCH
T ss_pred CCCccCcccccCCCCchhhH
Confidence 35699999988887 66653
No 7
>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.51 E-value=1.7e+02 Score=18.62 Aligned_cols=15 Identities=20% Similarity=0.439 Sum_probs=11.0
Q ss_pred hcCCCcccCCcCCCC
Q psy14934 67 LQKQYQFWSTQPVPK 81 (87)
Q Consensus 67 ~~k~yKFW~TQPVPK 81 (87)
..-.|-|+.+=|+|.
T Consensus 301 elL~Hpff~~~p~p~ 315 (318)
T d3blha1 301 DALNHDFFWSDPMPS 315 (318)
T ss_dssp HHHHSGGGSSSSCCC
T ss_pred HHHcChhhccCCCCC
Confidence 344677877889986
No 8
>d1a81a2 d.93.1.1 (A:138-262) Syk tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.07 E-value=1e+02 Score=18.22 Aligned_cols=7 Identities=57% Similarity=0.743 Sum_probs=5.1
Q ss_pred CcCCCCC
Q psy14934 76 TQPVPKI 82 (87)
Q Consensus 76 TQPVPKl 82 (87)
|.|||++
T Consensus 119 ~~P~~k~ 125 (125)
T d1a81a2 119 TVPCQKI 125 (125)
T ss_dssp CCBCCCC
T ss_pred CeeCCCC
Confidence 6788875
No 9
>d1xuba1 d.21.1.2 (A:1-128) Phenazine biosynthesis protein PhzF {Pseudomonas fluorescens [TaxId: 294]}
Probab=4.12 E-value=68 Score=19.61 Aligned_cols=12 Identities=25% Similarity=0.337 Sum_probs=7.3
Q ss_pred cccCCcCCCCCC
Q psy14934 72 QFWSTQPVPKIV 83 (87)
Q Consensus 72 KFW~TQPVPKld 83 (87)
..|=+||+|.|.
T Consensus 114 ~~~~~~p~P~~~ 125 (128)
T d1xuba1 114 AASMDQPIPTWT 125 (128)
T ss_dssp EEEEECCCCEEE
T ss_pred EEEEcCCCCccc
Confidence 456666666653
No 10
>d2vgna3 d.79.3.2 (A:278-381) Dom34 {Saccharomyces cerevisiae [TaxId: 4932]}
Probab=3.77 E-value=1.5e+02 Score=17.16 Aligned_cols=7 Identities=29% Similarity=0.738 Sum_probs=0.0
Q ss_pred CCCCCCc
Q psy14934 78 PVPKIVV 84 (87)
Q Consensus 78 PVPKldE 84 (87)
|||.|||
T Consensus 98 ~i~d~de 104 (104)
T d2vgna3 98 PLPDLDE 104 (104)
T ss_dssp CCCCSSC
T ss_pred cCCcccC
Done!