RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy14934
         (87 letters)



>gnl|CDD|227423 COG5092, NMT1, N-myristoyl transferase [Lipid metabolism].
          Length = 451

 Score = 36.5 bits (84), Expect = 6e-04
 Identities = 11/48 (22%), Positives = 24/48 (50%)

Query: 34 NSEGGVNFSIQEIRKAMEVFSLQQRSAKTPEEALQKQYQFWSTQPVPK 81
           SE      ++ + K +++ +         ++ + K ++FWSTQPV +
Sbjct: 1  MSEEDKAKKLENLLKLLQLNNDDTSKFTQEQKKMGKDHKFWSTQPVDR 48


>gnl|CDD|234643 PRK00114, hslO, Hsp33-like chaperonin; Reviewed.
          Length = 293

 Score = 27.8 bits (63), Expect = 0.57
 Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 5/37 (13%)

Query: 48  KAMEVFSLQQRSAKTPEEAL-----QKQYQFWSTQPV 79
           K  E+FSL   S  T EE L     ++  +    QPV
Sbjct: 198 KEEELFSLLLESGLTAEELLYRLYHEEDVKILEPQPV 234


>gnl|CDD|236462 PRK09303, PRK09303, adaptive-response sensory kinase; Validated.
          Length = 380

 Score = 27.2 bits (61), Expect = 0.99
 Identities = 11/46 (23%), Positives = 22/46 (47%), Gaps = 5/46 (10%)

Query: 28  GEDQATNSEGGVNFSIQEIRKAMEVFSLQQRSAKTPEEALQKQYQF 73
           GE+   +      +S + ++ + E+F L+Q       E L +Q +F
Sbjct: 110 GENLQPSEIDSGRYSQELLQLSDELFVLRQE-----NETLLEQLKF 150


>gnl|CDD|219102 pfam06600, DUF1140, Protein of unknown function (DUF1140).  This
          family consists of several short, hypothetical phage
          and bacterial proteins. The function of this family is
          unknown.
          Length = 107

 Score = 26.5 bits (58), Expect = 1.4
 Identities = 16/76 (21%), Positives = 30/76 (39%), Gaps = 4/76 (5%)

Query: 4  LKKKKQKADEGSGNPSKAVENGGG-GEDQATNSEGGVNFSIQEIRKAMEVFSLQQRSAKT 62
          L K K++A+       K  E+G      +   ++  + F I+E    +       RS + 
Sbjct: 25 LFKTKERANR---CREKIAESGLCVRTSRHWKAQENLEFYIREKSFLLHQLLELDRSYRW 81

Query: 63 PEEALQKQYQFWSTQP 78
           E+  Q +Y F +   
Sbjct: 82 SEKLHQDRYSFVTKYV 97


>gnl|CDD|216874 pfam02099, Josephin, Josephin. 
          Length = 158

 Score = 26.6 bits (59), Expect = 1.4
 Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 1/31 (3%)

Query: 35 SEGGVNFSIQEIRKAMEVFSLQQRSAKTPEE 65
           + G NFSIQ +  A+EV+ L      +P  
Sbjct: 60 DDTG-NFSIQVLETALEVWGLSVIPWHSPRV 89


>gnl|CDD|220664 pfam10267, Tmemb_cc2, Predicted transmembrane and coiled-coil 2
           protein.  This family of transmembrane coiled-coil
           containing proteins is conserved from worms to humans.
           Its function is unknown.
          Length = 387

 Score = 26.3 bits (58), Expect = 2.2
 Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 6/63 (9%)

Query: 11  ADEGSGNPSKAVENGGGGEDQATNSEGGVNFSIQEIRKAMEVFSLQQRSAKTPEEALQKQ 70
           A   S + S      G G   A      ++  ++E+R+  E  S  + S +  +E LQ+ 
Sbjct: 185 AGANSNSGS------GPGSAVAQQQSLNLDKLLEELREIKEGQSRLEESYERLKEQLQRD 238

Query: 71  YQF 73
           YQ+
Sbjct: 239 YQY 241


>gnl|CDD|237486 PRK13736, PRK13736, conjugal transfer protein TraK; Provisional.
          Length = 245

 Score = 24.7 bits (54), Expect = 7.4
 Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 8/55 (14%)

Query: 35  SEGGVNFSIQEIRKAME--VFSLQQRSAKTPEEALQKQYQFWST-QPVPKIVVTI 86
           +E G+N SIQ + +A       L      T EEA     + W   QP   ++V +
Sbjct: 95  TERGLNLSIQAVPRAGAGRTIQLVSDLRGTGEEA-----KAWEESQPYESLLVAL 144


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.307    0.126    0.343 

Gapped
Lambda     K      H
   0.267   0.0720    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,302,282
Number of extensions: 330842
Number of successful extensions: 263
Number of sequences better than 10.0: 1
Number of HSP's gapped: 263
Number of HSP's successfully gapped: 14
Length of query: 87
Length of database: 10,937,602
Length adjustment: 55
Effective length of query: 32
Effective length of database: 8,498,132
Effective search space: 271940224
Effective search space used: 271940224
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 53 (24.2 bits)