RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy14934
         (87 letters)



>1rxt_A Myristoyl-, glycylpeptide N-tetradecanoyltransferase 1; alpha-beta
           structure, unique N-myristoyltransferase fold; 3.00A
           {Homo sapiens} SCOP: d.108.1.2 d.108.1.2
          Length = 496

 Score = 55.5 bits (133), Expect = 7e-11
 Identities = 29/78 (37%), Positives = 40/78 (51%)

Query: 5   KKKKQKADEGSGNPSKAVENGGGGEDQATNSEGGVNFSIQEIRKAMEVFSLQQRSAKTPE 64
               +K  +      +        +DQ           IQEI+KA+E+FS+ Q  AKT E
Sbjct: 51  DTGAKKKKKKQKKKKEKGSETDSAQDQPVKMNSLPAERIQEIQKAIELFSVGQGPAKTME 110

Query: 65  EALQKQYQFWSTQPVPKI 82
           EA ++ YQFW TQPVPK+
Sbjct: 111 EASKRSYQFWDTQPVPKL 128


>2wuu_A N-myristoyltransferase; acyltransferase; HET: NHM; 1.42A
          {Leishmania donovani} PDB: 3h5z_A* 4a2z_A* 4a30_A*
          4a31_A* 4a32_A* 4a33_A* 2wsa_A*
          Length = 421

 Score = 38.9 bits (90), Expect = 5e-05
 Identities = 9/23 (39%), Positives = 14/23 (60%), Gaps = 1/23 (4%)

Query: 60 AKTPEEALQKQYQFWSTQPVPKI 82
          ++ P  +    + FWSTQPVP+ 
Sbjct: 2  SRNPSNS-DAAHAFWSTQPVPQT 23


>3iu1_A Glycylpeptide N-tetradecanoyltransferase 1;
          N-myristoyltransferase, NMT1, acyltransferase,
          phosphoprotein, structural genomics; HET: MYA; 1.42A
          {Homo sapiens} PDB: 3iu2_A* 3iwe_A* 3jtk_A*
          Length = 383

 Score = 37.3 bits (86), Expect = 2e-04
 Identities = 10/14 (71%), Positives = 12/14 (85%)

Query: 69 KQYQFWSTQPVPKI 82
          + YQFW TQPVPK+
Sbjct: 2  RSYQFWDTQPVPKL 15


>1iic_A Peptide N-myristoyltransferase; HET: MYA; 2.20A {Saccharomyces
          cerevisiae} SCOP: d.108.1.2 d.108.1.2 PDB: 1iid_A*
          2nmt_A* 2p6e_A* 2p6f_A* 2p6g_A*
          Length = 422

 Score = 37.4 bits (86), Expect = 2e-04
 Identities = 7/14 (50%), Positives = 9/14 (64%)

Query: 69 KQYQFWSTQPVPKI 82
          K ++FW TQPV   
Sbjct: 3  KDHKFWRTQPVKDF 16


>4a95_A Glycylpeptide N-tetradecanoyltransferase; malaria; HET: 9MT NHM;
          1.55A {Plasmodium vivax}
          Length = 384

 Score = 36.1 bits (83), Expect = 5e-04
 Identities = 10/12 (83%), Positives = 11/12 (91%)

Query: 71 YQFWSTQPVPKI 82
          Y+FW TQPVPKI
Sbjct: 2  YKFWYTQPVPKI 13


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 27.5 bits (60), Expect = 0.54
 Identities = 8/42 (19%), Positives = 14/42 (33%), Gaps = 6/42 (14%)

Query: 43  IQEIRKAMEVFSLQQRSA--KTPEEALQKQYQF----WSTQP 78
           +    +       +Q     K  EE L+  Y+F      T+ 
Sbjct: 61  VSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQ 102



 Score = 27.1 bits (59), Expect = 0.76
 Identities = 11/42 (26%), Positives = 14/42 (33%), Gaps = 6/42 (14%)

Query: 45  EIRKAMEVFSLQQRSAKTPEEALQKQYQFW---STQPVPKIV 83
           E RK  +  S+   SA  P   L      W       V  +V
Sbjct: 370 EYRKMFDRLSVFPPSAHIPTILLSL---IWFDVIKSDVMVVV 408


>2qdr_A Uncharacterized protein; double-stranded beta-helix fold,
          structural genomics, joint for structural genomics,
          JCSG; HET: MSE EPE; 2.60A {Nostoc punctiforme}
          Length = 303

 Score = 25.6 bits (55), Expect = 2.4
 Identities = 10/27 (37%), Positives = 14/27 (51%)

Query: 54 SLQQRSAKTPEEALQKQYQFWSTQPVP 80
          +L  R     +E L +QYQF+ T  V 
Sbjct: 36 NLSGRRTAIAKEYLPRQYQFFDTNTVM 62


>2b3o_A Tyrosine-protein phosphatase, non-receptor type 6; protein tyrosine
           phosphatase, SHP-1, signaling, hydrolase; 2.80A {Homo
           sapiens} PDB: 1x6c_A 2rmx_A* 2yu7_A*
          Length = 532

 Score = 25.2 bits (55), Expect = 2.9
 Identities = 6/26 (23%), Positives = 10/26 (38%)

Query: 50  MEVFSLQQRSAKTPEEALQKQYQFWS 75
            E +     S    E  LQ + + W+
Sbjct: 107 SERWYHGHMSGGQAETLLQAKGEPWT 132


>2aex_A Coproporphyrinogen III oxidase, mitochondrial; FLAT beta-sheet
           sandwiched by helices, oxidoreductase; HET: CIT; 1.58A
           {Homo sapiens}
          Length = 346

 Score = 25.3 bits (56), Expect = 3.3
 Identities = 13/60 (21%), Positives = 22/60 (36%), Gaps = 8/60 (13%)

Query: 23  ENGGGG-----EDQATNSEGGVNFSIQEIR-KAMEVFSLQQRSAKTPEEALQKQYQFWST 76
           + GGGG     +D     + GV+ S   +     E  + Q RS     +    +  F + 
Sbjct: 76  KEGGGGISCVLQDGCVFEKAGVSIS--VVHGNLSEEAAKQMRSRGKVLKTKDGKLPFCAM 133


>3ps5_A Tyrosine-protein phosphatase non-receptor type 6; SH2, PTP,
           hydrolase, signaling protein; 3.10A {Homo sapiens}
          Length = 595

 Score = 24.5 bits (53), Expect = 5.8
 Identities = 5/23 (21%), Positives = 9/23 (39%)

Query: 53  FSLQQRSAKTPEEALQKQYQFWS 75
           +     S    E  LQ + + W+
Sbjct: 110 WYHGHMSGGQAETLLQAKGEPWT 132


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.307    0.126    0.343 

Gapped
Lambda     K      H
   0.267   0.0563    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,261,406
Number of extensions: 60133
Number of successful extensions: 96
Number of sequences better than 10.0: 1
Number of HSP's gapped: 96
Number of HSP's successfully gapped: 12
Length of query: 87
Length of database: 6,701,793
Length adjustment: 55
Effective length of query: 32
Effective length of database: 5,166,138
Effective search space: 165316416
Effective search space used: 165316416
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 51 (23.8 bits)