RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14934
         (87 letters)



>d1iica1 d.108.1.2 (A:34-218) N-myristoyl transferase, NMT
          {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
          4932]}
          Length = 185

 Score = 36.0 bits (83), Expect = 2e-04
 Identities = 7/14 (50%), Positives = 9/14 (64%)

Query: 69 KQYQFWSTQPVPKI 82
          K ++FW TQPV   
Sbjct: 3  KDHKFWRTQPVKDF 16


>d1chua1 a.7.3.1 (A:423-533) L-aspartate oxidase {Escherichia coli
          [TaxId: 562]}
          Length = 111

 Score = 28.1 bits (62), Expect = 0.068
 Identities = 11/43 (25%), Positives = 18/43 (41%), Gaps = 2/43 (4%)

Query: 29 EDQATNSEGGVNFS--IQEIRKAMEVFSLQQRSAKTPEEALQK 69
          E +  N +  V       E+R  M  +    R+ K  E AL++
Sbjct: 2  ESRVENPDERVVIQHNWHELRLFMWDYVGIVRTTKRLERALRR 44


>d2vmha1 b.18.1.33 (A:906-1050) Uncharacterized Protein CPF2129
          {Clostridium perfringens [TaxId: 1502]}
          Length = 145

 Score = 23.0 bits (49), Expect = 6.5
 Identities = 2/18 (11%), Positives = 8/18 (44%)

Query: 26 GGGEDQATNSEGGVNFSI 43
           G + +   +   ++F +
Sbjct: 72 VGVDQEMAGTVASISFEV 89


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.307    0.126    0.343 

Gapped
Lambda     K      H
   0.267   0.0571    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 305,399
Number of extensions: 11117
Number of successful extensions: 18
Number of sequences better than 10.0: 1
Number of HSP's gapped: 18
Number of HSP's successfully gapped: 4
Length of query: 87
Length of database: 2,407,596
Length adjustment: 52
Effective length of query: 35
Effective length of database: 1,693,636
Effective search space: 59277260
Effective search space used: 59277260
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 47 (22.2 bits)