BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14938
(96 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1RXT|A Chain A, Crystal Structure Of Human Myristoyl-Coa:protein N-
Myristoyltransferase.
pdb|1RXT|B Chain B, Crystal Structure Of Human Myristoyl-Coa:protein N-
Myristoyltransferase.
pdb|1RXT|C Chain C, Crystal Structure Of Human Myristoyl-Coa:protein N-
Myristoyltransferase.
pdb|1RXT|D Chain D, Crystal Structure Of Human Myristoyl-Coa:protein N-
Myristoyltransferase
Length = 496
Score = 118 bits (296), Expect = 7e-28, Method: Composition-based stats.
Identities = 64/141 (45%), Positives = 80/141 (56%), Gaps = 45/141 (31%)
Query: 1 FFLRFDLAPIFSEEEFKHWFLPRDGIVYTFVVEN-DGEITEII----------------- 42
+ +F L P+ S+EE +HWF P++ I+ TFVVEN +GE+T+ +
Sbjct: 356 YLKQFHLTPVMSQEEVEHWFYPQENIIDTFVVENANGEVTDFLSFYTLPSTIMNHPTHKS 415
Query: 43 LK---------------------------EGFDVFNALDLMENKEFLGPLKFGIGDGNLQ 75
LK +GFDVFNALDLMENK FL LKFGIGDGNLQ
Sbjct: 416 LKAAYSFYNVHTQTPLLDLMSDALVLAKMKGFDVFNALDLMENKTFLEKLKFGIGDGNLQ 475
Query: 76 YYLYNWKCPSIPPNKIGLVLQ 96
YYLYNWKCPS+ K+G+VLQ
Sbjct: 476 YYLYNWKCPSMGAEKVGIVLQ 496
>pdb|3IU1|A Chain A, Crystal Structure Of Human Type-I N-Myristoyltransferase
With Bound Myristoyl-Coa
pdb|3IU1|B Chain B, Crystal Structure Of Human Type-I N-Myristoyltransferase
With Bound Myristoyl-Coa
pdb|3IU2|A Chain A, Crystal Structure Of Human Type-I N-Myristoyltransferase
With Bound Myristoyl-Coa And Inhibitor Ddd90096
pdb|3IU2|B Chain B, Crystal Structure Of Human Type-I N-Myristoyltransferase
With Bound Myristoyl-Coa And Inhibitor Ddd90096
pdb|3IWE|A Chain A, Crystal Structure Of Human Type-I N-Myristoyltransferase
With Bound Myristoyl-Coa And Inhibitor Ddd85646
pdb|3IWE|B Chain B, Crystal Structure Of Human Type-I N-Myristoyltransferase
With Bound Myristoyl-Coa And Inhibitor Ddd85646
pdb|3JTK|A Chain A, Crystal Structure Of Human Type-I N-Myristoyltransferase
With Bound Myristoyl-Coa And Inhibitor Ddd90055
pdb|3JTK|B Chain B, Crystal Structure Of Human Type-I N-Myristoyltransferase
With Bound Myristoyl-Coa And Inhibitor Ddd90055
Length = 383
Score = 113 bits (283), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 65/141 (46%), Positives = 80/141 (56%), Gaps = 45/141 (31%)
Query: 1 FFLRFDLAPIFSEEEFKHWFLPRDGIVYTFVVEN-DGEITEII----------------- 42
+ +F L P+ S+EE +HWF P++ I+ TFVVEN +GE+T+ +
Sbjct: 243 YLKQFHLTPVMSQEEVEHWFYPQENIIDTFVVENANGEVTDFLSFYTLPSTIMNHPTHKS 302
Query: 43 LK---------------------------EGFDVFNALDLMENKEFLGPLKFGIGDGNLQ 75
LK +GFDVFNALDLMENK FL LKFGIGDGNLQ
Sbjct: 303 LKAAYSFYNVHTQTPLLDLMSDALVLAKMKGFDVFNALDLMENKTFLEKLKFGIGDGNLQ 362
Query: 76 YYLYNWKCPSIPPNKIGLVLQ 96
YYLYNWKCPS+ K+GLVLQ
Sbjct: 363 YYLYNWKCPSMGAEKVGLVLQ 383
>pdb|2WUU|A Chain A, Structure Of N-Myristoyltransferase From L. Donovani
Length = 421
Score = 93.2 bits (230), Expect = 4e-20, Method: Composition-based stats.
Identities = 47/135 (34%), Positives = 71/135 (52%), Gaps = 44/135 (32%)
Query: 5 FDLAPIFSEEEFKHWFLPRDGIVYTFVVENDGEIT------------------------- 39
FD+ P+FS+ E H+ LPRDG+V+T+VVEND ++T
Sbjct: 286 FDVGPVFSDAEISHYLLPRDGVVFTYVVENDKKVTDFFSFYRIPSTVIGNSNYNILNAAY 345
Query: 40 ------------EIIL-------KEGFDVFNALDLMENKEFLGPLKFGIGDGNLQYYLYN 80
++IL GFDV N +++++N+ F+ LKFG GDG+L+YY YN
Sbjct: 346 VHYYAATSMPLHQLILDLLIVAHSRGFDVCNMVEILDNRSFVEQLKFGAGDGHLRYYFYN 405
Query: 81 WKCPSIPPNKIGLVL 95
W P I P+++ LV+
Sbjct: 406 WAYPKIKPSQVALVM 420
>pdb|3H5Z|A Chain A, Crystal Structure Of Leishmania Major
N-Myristoyltransferase With Bound Myristoyl-Coa
pdb|4A2Z|A Chain A, Crystal Structure Of Leishmania Major
N-Myristoyltransferase (Nmt) With Bound Myristoyl-Coa
And A Pyrazole Sulphonamide Ligand
pdb|4A30|A Chain A, Crystal Structure Of Leishmania Major
N-Myristoyltransferase (Nmt) With Bound Myristoyl-Coa
And A Pyrazole Sulphonamide Ligand
pdb|4A31|A Chain A, Crystal Structure Of Leishmania Major
N-Myristoyltransferase (Nmt) With Bound Myristoyl-Coa
And A Pyrazole Sulphonamide Ligand
pdb|4A32|A Chain A, Crystal Structure Of Leishmania Major
N-Myristoyltransferase (Nmt) With Bound Myristoyl-Coa
And A Pyrazole Sulphonamide Ligand
pdb|4A33|A Chain A, Crystal Structure Of Leishmania Major
N-Myristoyltransferase (Nmt) With Bound Myristoyl-Coa
And A Pyrazole Sulphonamide Ligand
Length = 438
Score = 92.4 bits (228), Expect = 5e-20, Method: Composition-based stats.
Identities = 47/135 (34%), Positives = 71/135 (52%), Gaps = 44/135 (32%)
Query: 5 FDLAPIFSEEEFKHWFLPRDGIVYTFVVENDGEIT------------------------- 39
FD+ P+FS+ E H+ LPRDG+V+T+VVEND ++T
Sbjct: 303 FDVGPVFSDAEISHYLLPRDGVVFTYVVENDKKVTDFFSFYRIPSTVIGNSNYNLLNAAY 362
Query: 40 ------------EIIL-------KEGFDVFNALDLMENKEFLGPLKFGIGDGNLQYYLYN 80
++IL GFDV N +++++N+ F+ LKFG GDG+L+YY YN
Sbjct: 363 VHYYAATSIPLHQLILDLLIVAHSRGFDVCNMVEILDNRSFVEQLKFGAGDGHLRYYFYN 422
Query: 81 WKCPSIPPNKIGLVL 95
W P I P+++ LV+
Sbjct: 423 WAYPKIKPSQVALVM 437
>pdb|2WSA|A Chain A, Crystal Structure Of Leishmania Major N-
Myristoyltransferase (Nmt) With Bound Myristoyl-Coa And
A Pyrazole Sulphonamide Ligand (Ddd85646)
Length = 438
Score = 92.4 bits (228), Expect = 6e-20, Method: Composition-based stats.
Identities = 47/135 (34%), Positives = 71/135 (52%), Gaps = 44/135 (32%)
Query: 5 FDLAPIFSEEEFKHWFLPRDGIVYTFVVENDGEIT------------------------- 39
FD+ P+FS+ E H+ LPRDG+V+T+VVEND ++T
Sbjct: 303 FDVGPVFSDAEISHYLLPRDGVVFTYVVENDKKVTDFFSFYRIPSTVIGNSNYNLLNAAY 362
Query: 40 ------------EIIL-------KEGFDVFNALDLMENKEFLGPLKFGIGDGNLQYYLYN 80
++IL GFDV N +++++N+ F+ LKFG GDG+L+YY YN
Sbjct: 363 VHYYAATSIPLHQLILDLLIVAHSRGFDVCNMVEILDNRSFVEQLKFGAGDGHLRYYFYN 422
Query: 81 WKCPSIPPNKIGLVL 95
W P I P+++ LV+
Sbjct: 423 WAYPKIKPSQVALVM 437
>pdb|4A95|A Chain A, Plasmodium Vivax N-Myristoyltransferase With Quinoline
Inhibitor
pdb|4A95|B Chain B, Plasmodium Vivax N-Myristoyltransferase With Quinoline
Inhibitor
pdb|4A95|C Chain C, Plasmodium Vivax N-Myristoyltransferase With Quinoline
Inhibitor
pdb|4BBH|A Chain A, Plasmodium Vivax N-myristoyltransferase With A Bound
Benzothiophene Inhibitor
pdb|4BBH|B Chain B, Plasmodium Vivax N-myristoyltransferase With A Bound
Benzothiophene Inhibitor
pdb|4BBH|C Chain C, Plasmodium Vivax N-myristoyltransferase With A Bound
Benzothiophene Inhibitor
Length = 384
Score = 92.0 bits (227), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 48/139 (34%), Positives = 70/139 (50%), Gaps = 44/139 (31%)
Query: 1 FFLRFDLAPIFSEEEFKHWFLPRDGIVYTFVVENDGEITEIIL----------------- 43
+ +F+L +F++EE HWFLP + ++YT+V E +G+I ++I
Sbjct: 245 YLEQFNLYAVFTKEEIAHWFLPIENVIYTYVNEENGKIKDMISFYSLPSQILGNDKYSTL 304
Query: 44 ---------------------------KEGFDVFNALDLMENKEFLGPLKFGIGDGNLQY 76
+ FDVFNAL++M+NK LKFG GDG+L+Y
Sbjct: 305 NAAYSFYNVTTTATFKQLMQDAILLAKRNNFDVFNALEVMQNKSVFEDLKFGEGDGSLKY 364
Query: 77 YLYNWKCPSIPPNKIGLVL 95
YLYNWKC S P +G+VL
Sbjct: 365 YLYNWKCASFAPAHVGIVL 383
>pdb|4B10|A Chain A, Plasmodium Vivax N-Myristoyltransferase With A Non-
Hydrolysable Co-Factor
pdb|4B10|B Chain B, Plasmodium Vivax N-Myristoyltransferase With A Non-
Hydrolysable Co-Factor
pdb|4B10|C Chain C, Plasmodium Vivax N-Myristoyltransferase With A Non-
Hydrolysable Co-Factor
pdb|4B11|A Chain A, Plasmodium Vivax N-Myristoyltransferase With A Bound
Benzofuran Inhibitor (Compound 13)
pdb|4B11|B Chain B, Plasmodium Vivax N-Myristoyltransferase With A Bound
Benzofuran Inhibitor (Compound 13)
pdb|4B11|C Chain C, Plasmodium Vivax N-Myristoyltransferase With A Bound
Benzofuran Inhibitor (Compound 13)
pdb|4B12|A Chain A, Plasmodium Vivax N-Myristoyltransferase With A Bound
Benzofuran Inhibitor (Compound 23)
pdb|4B12|B Chain B, Plasmodium Vivax N-Myristoyltransferase With A Bound
Benzofuran Inhibitor (Compound 23)
pdb|4B12|C Chain C, Plasmodium Vivax N-Myristoyltransferase With A Bound
Benzofuran Inhibitor (Compound 23)
pdb|4B13|A Chain A, Plasmodium Vivax N-Myristoyltransferase With A Bound
Benzofuran Inhibitor (Compound 25)
pdb|4B13|B Chain B, Plasmodium Vivax N-Myristoyltransferase With A Bound
Benzofuran Inhibitor (Compound 25)
pdb|4B13|C Chain C, Plasmodium Vivax N-Myristoyltransferase With A Bound
Benzofuran Inhibitor (Compound 25)
pdb|4B14|A Chain A, Plasmodium Vivax N-Myristoyltransferase With A Bound
Benzofuran Inhibitor (Compound 26)
pdb|4B14|B Chain B, Plasmodium Vivax N-Myristoyltransferase With A Bound
Benzofuran Inhibitor (Compound 26)
pdb|4B14|C Chain C, Plasmodium Vivax N-Myristoyltransferase With A Bound
Benzofuran Inhibitor (Compound 26)
Length = 385
Score = 92.0 bits (227), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 48/139 (34%), Positives = 70/139 (50%), Gaps = 44/139 (31%)
Query: 1 FFLRFDLAPIFSEEEFKHWFLPRDGIVYTFVVENDGEITEIIL----------------- 43
+ +F+L +F++EE HWFLP + ++YT+V E +G+I ++I
Sbjct: 246 YLEQFNLYAVFTKEEIAHWFLPIENVIYTYVNEENGKIKDMISFYSLPSQILGNDKYSTL 305
Query: 44 ---------------------------KEGFDVFNALDLMENKEFLGPLKFGIGDGNLQY 76
+ FDVFNAL++M+NK LKFG GDG+L+Y
Sbjct: 306 NAAYSFYNVTTTATFKQLMQDAILLAKRNNFDVFNALEVMQNKSVFEDLKFGEGDGSLKY 365
Query: 77 YLYNWKCPSIPPNKIGLVL 95
YLYNWKC S P +G+VL
Sbjct: 366 YLYNWKCASFAPAHVGIVL 384
>pdb|1NMT|A Chain A, N-Myristoyl Transferase From Candida Albicans At 2.45 A
pdb|1NMT|B Chain B, N-Myristoyl Transferase From Candida Albicans At 2.45 A
pdb|1NMT|C Chain C, N-Myristoyl Transferase From Candida Albicans At 2.45 A
pdb|1IYK|A Chain A, Crystal Structure Of Candida Albicans
N-Myristoyltransferase With Myristoyl-Coa And Peptidic
Inhibitor
pdb|1IYK|B Chain B, Crystal Structure Of Candida Albicans
N-Myristoyltransferase With Myristoyl-Coa And Peptidic
Inhibitor
pdb|1IYL|A Chain A, Crystal Structure Of Candida Albicans
N-myristoyltransferase With Non- Peptidic Inhibitor
pdb|1IYL|B Chain B, Crystal Structure Of Candida Albicans
N-myristoyltransferase With Non- Peptidic Inhibitor
pdb|1IYL|C Chain C, Crystal Structure Of Candida Albicans
N-myristoyltransferase With Non- Peptidic Inhibitor
pdb|1IYL|D Chain D, Crystal Structure Of Candida Albicans
N-myristoyltransferase With Non- Peptidic Inhibitor
Length = 392
Score = 52.4 bits (124), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 54/137 (39%), Gaps = 57/137 (41%)
Query: 4 RFDLAPIFSEEEFKHWFLPRD-----GIVYTFVVENDG---------------------- 36
RFD+ +F+EEEFKHW L D +V ++VVE++
Sbjct: 229 RFDIVQLFTEEEFKHWMLGHDENSDSNVVKSYVVEDENGIITDYFSYYLLPFTVLDNAQH 288
Query: 37 -----------------------EITEIIL-------KEGFDVFNALDLMENKEFLGPLK 66
+ E+I K G DVFN L +N FL K
Sbjct: 289 DELGIAYLFYYASDSFEKPNYKKRLNELITDALITSKKFGVDVFNCLTCQDNTYFLKDCK 348
Query: 67 FGIGDGNLQYYLYNWKC 83
FG GDG L YYL+N++
Sbjct: 349 FGSGDGFLNYYLFNYRT 365
>pdb|2P6E|A Chain A, Crystal Structures Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoyl-Coa
pdb|2P6E|B Chain B, Crystal Structures Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoyl-Coa
pdb|2P6E|C Chain C, Crystal Structures Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoyl-Coa
pdb|2P6E|D Chain D, Crystal Structures Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoyl-Coa
pdb|2P6E|E Chain E, Crystal Structures Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoyl-Coa
pdb|2P6E|F Chain F, Crystal Structures Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoyl-Coa
pdb|2P6F|A Chain A, Crystal Structures Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoyl-Coa And
Inhibitors
pdb|2P6F|B Chain B, Crystal Structures Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoyl-Coa And
Inhibitors
pdb|2P6F|C Chain C, Crystal Structures Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoyl-Coa And
Inhibitors
pdb|2P6F|D Chain D, Crystal Structures Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoyl-Coa And
Inhibitors
pdb|2P6F|E Chain E, Crystal Structures Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoyl-Coa And
Inhibitors
pdb|2P6F|F Chain F, Crystal Structures Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoyl-Coa And
Inhibitors
pdb|2P6G|A Chain A, Crystal Structures Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoyl-Coa And
Inhibitors
pdb|2P6G|B Chain B, Crystal Structures Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoyl-Coa And
Inhibitors
pdb|2P6G|C Chain C, Crystal Structures Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoyl-Coa And
Inhibitors
pdb|2P6G|D Chain D, Crystal Structures Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoyl-Coa And
Inhibitors
pdb|2P6G|E Chain E, Crystal Structures Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoyl-Coa And
Inhibitors
pdb|2P6G|F Chain F, Crystal Structures Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoyl-Coa And
Inhibitors
Length = 455
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 26/41 (63%)
Query: 46 GFDVFNALDLMENKEFLGPLKFGIGDGNLQYYLYNWKCPSI 86
DVFNAL +N FL LKFG GDG L +YL+N++ I
Sbjct: 392 NMDVFNALTSQDNTLFLDDLKFGPGDGFLNFYLFNYRAKPI 432
>pdb|2NMT|A Chain A, Myristoyl-Coa:protein N-Myristoyltransferase Bound To
Myristoyl-Coa And Peptide Analogs
pdb|1IIC|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoylcoa
pdb|1IIC|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoylcoa
pdb|1IID|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae N-
Myristoyltransferase With Bound S-(2-Oxo)pentadecylcoa
And The Octapeptide Glyaskla
Length = 422
Score = 42.4 bits (98), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 26/41 (63%)
Query: 46 GFDVFNALDLMENKEFLGPLKFGIGDGNLQYYLYNWKCPSI 86
DVFNAL +N FL LKFG GDG L +YL+N++ I
Sbjct: 359 NMDVFNALTSQDNTLFLDDLKFGPGDGFLNFYLFNYRAKPI 399
>pdb|2D0V|A Chain A, Crystal Structure Of Methanol Dehydrogenase From
Hyphomicrobium Denitrificans
pdb|2D0V|D Chain D, Crystal Structure Of Methanol Dehydrogenase From
Hyphomicrobium Denitrificans
pdb|2D0V|I Chain I, Crystal Structure Of Methanol Dehydrogenase From
Hyphomicrobium Denitrificans
Length = 597
Score = 26.6 bits (57), Expect = 4.1, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 23 RDGIVYTFVVENDGEITEIILKEGFDVFNALDL 55
R+GIVYT EN I+ L + +VF +DL
Sbjct: 331 RNGIVYTLDRENGDLISADKLDDTVNVFKTVDL 363
>pdb|2P88|A Chain A, Crystal Structure Of N-succinyl Arg/lys Racemase From
Bacillus Cereus Atcc 14579
pdb|2P88|B Chain B, Crystal Structure Of N-succinyl Arg/lys Racemase From
Bacillus Cereus Atcc 14579
pdb|2P88|C Chain C, Crystal Structure Of N-succinyl Arg/lys Racemase From
Bacillus Cereus Atcc 14579
pdb|2P88|D Chain D, Crystal Structure Of N-succinyl Arg/lys Racemase From
Bacillus Cereus Atcc 14579
pdb|2P88|E Chain E, Crystal Structure Of N-succinyl Arg/lys Racemase From
Bacillus Cereus Atcc 14579
pdb|2P88|F Chain F, Crystal Structure Of N-succinyl Arg/lys Racemase From
Bacillus Cereus Atcc 14579
pdb|2P88|G Chain G, Crystal Structure Of N-succinyl Arg/lys Racemase From
Bacillus Cereus Atcc 14579
pdb|2P88|H Chain H, Crystal Structure Of N-succinyl Arg/lys Racemase From
Bacillus Cereus Atcc 14579
pdb|2P8B|A Chain A, Crystal Structure Of N-Succinyl ArgLYS RACEMASE FROM
Bacillus Cereus Atcc 14579 Complexed With N-Succinyl
Lys.
pdb|2P8C|A Chain A, Crystal Structure Of N-Succinyl ArgLYS RACEMASE FROM
Bacillus Cereus Atcc 14579 Complexed With N-Succinyl Arg
Length = 369
Score = 26.6 bits (57), Expect = 4.2, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 46 GFDVFNALDLMENKEFLGPLKFGIGDGNLQY 76
GF V + ++ + E GPLKF GNL Y
Sbjct: 306 GFHVAFSKKIITSVELTGPLKFTKDIGNLHY 336
>pdb|1UFZ|A Chain A, Solution Structure Of Hbs1-Like Domain In Hypothetical
Protein Bab28515
Length = 83
Score = 25.4 bits (54), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 38 ITEIILKEGFDVFNALDLMENKEFLGP 64
+TE ILK FDV AL ++ ++ GP
Sbjct: 54 LTEAILKHKFDVQKALSVVLEQDGSGP 80
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.150 0.479
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,183,106
Number of Sequences: 62578
Number of extensions: 127513
Number of successful extensions: 326
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 303
Number of HSP's gapped (non-prelim): 24
length of query: 96
length of database: 14,973,337
effective HSP length: 62
effective length of query: 34
effective length of database: 11,093,501
effective search space: 377179034
effective search space used: 377179034
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 45 (21.9 bits)