Query psy14938
Match_columns 96
No_of_seqs 110 out of 236
Neff 4.8
Searched_HMMs 46136
Date Fri Aug 16 16:17:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14938.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14938hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02799 NMT_C: Myristoyl-CoA: 100.0 1.3E-50 2.8E-55 302.4 4.3 95 1-95 49-190 (190)
2 KOG2779|consensus 100.0 9.4E-48 2E-52 309.7 4.9 96 1-96 281-421 (421)
3 COG5092 NMT1 N-myristoyl trans 100.0 1.2E-37 2.6E-42 250.2 2.9 96 1-96 279-451 (451)
4 PF15092 UPF0728: Uncharacteri 63.9 2.6 5.6E-05 28.6 0.3 26 48-74 47-77 (88)
5 COG3878 Uncharacterized protei 44.1 33 0.00071 27.4 3.5 60 21-80 76-139 (261)
6 KOG4223|consensus 34.6 17 0.00036 29.8 0.6 15 10-24 257-271 (325)
7 KOG0870|consensus 34.4 3.5 7.5E-05 31.0 -3.1 21 46-66 68-88 (172)
8 PF08954 DUF1900: Domain of un 19.6 53 0.0011 23.3 0.9 18 67-84 28-45 (136)
9 PF11569 Homez: Homeodomain le 17.6 27 0.00059 21.7 -0.9 15 9-23 35-49 (56)
10 PF11540 Dynein_IC2: Cytoplasm 17.1 92 0.002 17.5 1.3 13 17-29 14-26 (33)
No 1
>PF02799 NMT_C: Myristoyl-CoA:protein N-myristoyltransferase, C-terminal domain; InterPro: IPR022677 Myristoyl-CoA:protein N-myristoyltransferase (2.3.1.97 from EC) (Nmt) [] is the enzyme responsible for transferring a myristate group on the N-terminal glycine of a number of cellular eukaryotics and viral proteins. Nmt is a monomeric protein of about 50 to 60kDa whose sequence appears to be well conserved. The N and C-terminal domains of NMT are structurally similar, each adopting an acyl-CoA N-acyltransferase-like fold. This entry represents the C-terminal region.; GO: 0004379 glycylpeptide N-tetradecanoyltransferase activity; PDB: 2P6G_B 2P6F_F 2P6E_A 1IIC_A 1IID_A 2NMT_A 2WUU_A 1IYL_B 1NMT_B 1IYK_A ....
Probab=100.00 E-value=1.3e-50 Score=302.44 Aligned_cols=95 Identities=66% Similarity=1.275 Sum_probs=80.9
Q ss_pred CcccccceeccChhhheeeeccCCCeEEEEEEecC-Cceeeee-------------------------------------
Q psy14938 1 FFLRFDLAPIFSEEEFKHWFLPRDGIVYTFVVEND-GEITEII------------------------------------- 42 (96)
Q Consensus 1 yl~~f~l~~~fs~eev~Hw~lp~~~Vi~tyVve~~-~~iTDf~------------------------------------- 42 (96)
||+||+++|+||+|||+|||+|+++||||||||++ |+||||+
T Consensus 49 yl~~f~l~~~fs~eev~Hw~lp~~~Vv~syVve~~~~~ITDf~SFY~Lpstvi~~~k~~~l~aAY~fY~~~~~~~l~~Lm 128 (190)
T PF02799_consen 49 YLKKFDLAPVFSEEEVKHWFLPRKNVVYSYVVEDPDGKITDFFSFYSLPSTVIGNPKHKTLKAAYSFYYVATSTRLKELM 128 (190)
T ss_dssp HHTTSSEEEE--HHHHHHHHS-BTTTEEEEEEEETTSEEEEEEEEEEEEEEESSSSSSSEEEEEEEEEEEESSSHHHHHH
T ss_pred HHHhcccccccCHHHHHhhcccCCCeEEEEEEecCCCceeeEEEEeecceeecCCCCccceeeeeeeeeeecCCCHHHHH
Confidence 68999999999999999999999999999999998 7999999
Q ss_pred -------eccCCeEEEeeccccchhccccCcccccceeeeEEEeeccCCCCCC--CceEEEc
Q psy14938 43 -------LKEGFDVFNALDLMENKEFLGPLKFGIGDGNLQYYLYNWKCPSIPP--NKIGLVL 95 (96)
Q Consensus 43 -------k~~gfDVfN~Ld~m~N~~fl~~lkF~~GdG~L~YYLyNw~~~~i~~--~~vglvl 95 (96)
|+.|||||||||+|+|++||++||||+|||+|||||||||||+|.+ ++||+||
T Consensus 129 ~DaLi~Ak~~gfDVFNaLd~mdN~~fL~~lKFg~GdG~L~YYLyNwr~~~i~~~~~~vGlVl 190 (190)
T PF02799_consen 129 NDALILAKNEGFDVFNALDLMDNSSFLEDLKFGPGDGNLNYYLYNWRCPPIMGPISKVGLVL 190 (190)
T ss_dssp HHHHHHHHHTTESEEEEESTTTGGGTTTTTT-EEEEEEEEEEEESEB-----GSBGGBE---
T ss_pred HHHHHHHHHcCCCEEehhhhccchhhHhhCCccCCCCCeEEEEEeccCCCCCCCccccceeC
Confidence 8999999999999999999999999999999999999999999875 8999997
No 2
>KOG2779|consensus
Probab=100.00 E-value=9.4e-48 Score=309.74 Aligned_cols=96 Identities=65% Similarity=1.285 Sum_probs=94.4
Q ss_pred CcccccceeccChhhheeeeccCCCeEEEEEEecC-Cceeeee-------------------------------------
Q psy14938 1 FFLRFDLAPIFSEEEFKHWFLPRDGIVYTFVVEND-GEITEII------------------------------------- 42 (96)
Q Consensus 1 yl~~f~l~~~fs~eev~Hw~lp~~~Vi~tyVve~~-~~iTDf~------------------------------------- 42 (96)
||+||.+||+|++|||+|||+|+|+||||||||++ |+||||+
T Consensus 281 yl~qf~la~~f~~eev~Hwf~p~e~VV~syVvesp~g~ITDF~SFy~lpsTv~~~~~~ktl~aaYlyY~v~~~t~~~~lv 360 (421)
T KOG2779|consen 281 YLKQFELAPVFDEEEVEHWFLPRENVVYSYVVESPNGKITDFCSFYSLPSTVMGNPKYKTLQAAYLYYNVATSTPLLQLV 360 (421)
T ss_pred HHHheecccccCHHHhHhhcccccceEEEEEEECCCCcccceeeEEeccccccCCCCcceeeeeeEEEeccCCccHHHHH
Confidence 78999999999999999999999999999999997 9999999
Q ss_pred -------eccCCeEEEeeccccchhccccCcccccceeeeEEEeeccCCCCCCCceEEEcC
Q psy14938 43 -------LKEGFDVFNALDLMENKEFLGPLKFGIGDGNLQYYLYNWKCPSIPPNKIGLVLQ 96 (96)
Q Consensus 43 -------k~~gfDVfN~Ld~m~N~~fl~~lkF~~GdG~L~YYLyNw~~~~i~~~~vglvl~ 96 (96)
|+.|||||||||+|+|++||++||||+|||+||||||||||+.++|++||+|||
T Consensus 361 nDalilak~~gfDVFNAld~meN~~fl~~LkFg~GdG~l~YYLYNwr~~~~~ps~vglVL~ 421 (421)
T KOG2779|consen 361 NDALILAKQKGFDVFNALDLMENESFLKDLKFGPGDGNLQYYLYNWRCPAMKPSKVGLVLQ 421 (421)
T ss_pred HHHHHHHHhcCCceeehhhhhhhhhHHHhcCcCcCCCceeEEEEeccCCcCChhheeEeeC
Confidence 999999999999999999999999999999999999999999999999999997
No 3
>COG5092 NMT1 N-myristoyl transferase [Lipid metabolism]
Probab=100.00 E-value=1.2e-37 Score=250.23 Aligned_cols=96 Identities=49% Similarity=0.854 Sum_probs=91.8
Q ss_pred CcccccceeccChhhheeeeccCCC-----eEEEEEEecC-Cceeeee--------------------------------
Q psy14938 1 FFLRFDLAPIFSEEEFKHWFLPRDG-----IVYTFVVEND-GEITEII-------------------------------- 42 (96)
Q Consensus 1 yl~~f~l~~~fs~eev~Hw~lp~~~-----Vi~tyVve~~-~~iTDf~-------------------------------- 42 (96)
|++||.+++.|++||+.|||+|.++ |+||||||++ |+||||+
T Consensus 279 y~~Rfel~~~f~~Eei~h~F~~~~~v~~~~v~~syvVe~p~gkItdFfsFyslp~t~i~n~kykdiq~gYLYYya~d~~~ 358 (451)
T COG5092 279 YSRRFELYEEFRFEEIVHTFRPVKNVVDKQVTYSYVVEEPNGKITDFFSFYSLPFTTIENKKYKDIQGGYLYYYAGDDQF 358 (451)
T ss_pred HHHHHHHHHHHhHHHHHhhcccccccccCceEEEEEEeCCCCccccceEEEeccceeecCccccccceeEEEEEccCccc
Confidence 5789999999999999999999765 7799999998 9999999
Q ss_pred --------------------------eccCCeEEEeeccccchhccccCcccccceeeeEEEeeccCCCCC---------
Q psy14938 43 --------------------------LKEGFDVFNALDLMENKEFLGPLKFGIGDGNLQYYLYNWKCPSIP--------- 87 (96)
Q Consensus 43 --------------------------k~~gfDVfN~Ld~m~N~~fl~~lkF~~GdG~L~YYLyNw~~~~i~--------- 87 (96)
|++||||||||++|||..||++||||+|||.|+||||||+|++|+
T Consensus 359 kd~~~~a~~a~~~r~~e~v~Da~ilak~~~~DVFNalt~~dN~lFL~dLkFg~GdGflnyYlyNy~~~~Ipggl~~~~s~ 438 (451)
T COG5092 359 KDFDPKATKALKTRVAEMVGDAMILAKVEGCDVFNALTMMDNSLFLADLKFGCGDGFLNYYLYNYKSEEIPGGLNPDNSN 438 (451)
T ss_pred cccChHHHHHHHHHHHHHHHHHHHHHHHcCCchhhhhhhccchhHHHhcCccCCCceeEEEEEeccCCCCCCCCCccccc
Confidence 899999999999999999999999999999999999999999999
Q ss_pred ----CCceEEEcC
Q psy14938 88 ----PNKIGLVLQ 96 (96)
Q Consensus 88 ----~~~vglvl~ 96 (96)
+++||+|||
T Consensus 439 d~~rrs~vgfVm~ 451 (451)
T COG5092 439 DIKRRSKVGFVMP 451 (451)
T ss_pred cccccccceEecC
Confidence 899999997
No 4
>PF15092 UPF0728: Uncharacterised protein family UPF0728
Probab=63.93 E-value=2.6 Score=28.61 Aligned_cols=26 Identities=42% Similarity=0.837 Sum_probs=20.2
Q ss_pred eEEEeeccccchhc-----cccCcccccceee
Q psy14938 48 DVFNALDLMENKEF-----LGPLKFGIGDGNL 74 (96)
Q Consensus 48 DVfN~Ld~m~N~~f-----l~~lkF~~GdG~L 74 (96)
+-+|++.++-|.+- |.+|-|| |||+|
T Consensus 47 ~d~n~vel~vnge~VF~CnI~~L~Fg-gDg~l 77 (88)
T PF15092_consen 47 EDWNVVELVVNGEIVFQCNITDLEFG-GDGKL 77 (88)
T ss_pred ccccEEEEEECCeEEEEeCCceeecC-CCCCc
Confidence 33678888888654 8899998 99976
No 5
>COG3878 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=44.10 E-value=33 Score=27.43 Aligned_cols=60 Identities=22% Similarity=0.289 Sum_probs=49.7
Q ss_pred ccCCCeEEEEEE-ecC--C-ceeeeeeccCCeEEEeeccccchhccccCcccccceeeeEEEee
Q psy14938 21 LPRDGIVYTFVV-END--G-EITEIILKEGFDVFNALDLMENKEFLGPLKFGIGDGNLQYYLYN 80 (96)
Q Consensus 21 lp~~~Vi~tyVv-e~~--~-~iTDf~k~~gfDVfN~Ld~m~N~~fl~~lkF~~GdG~L~YYLyN 80 (96)
.|.+|+..=||. +++ | ...|+..+.||-|++.=++++|.+-++.--.-.|+|..-+=+++
T Consensus 76 yP~~GILqFyi~~~DdlYGl~f~~~~~~~~F~v~~f~~~~e~~~~~~~~~~f~~~~~~~~~~~~ 139 (261)
T COG3878 76 YPVEGILQFYISSEDDLYGLSFDDFTEQTGFRVIYFEKIEENYKILEEDVNFKGNNINPRPVVD 139 (261)
T ss_pred CCccceEEEEEeccccccccccccccCcCceEEEeccchhhhhhccccccCcccCCcCcccchh
Confidence 788999999996 665 6 56688899999999999999999888887777899877664444
No 6
>KOG4223|consensus
Probab=34.60 E-value=17 Score=29.85 Aligned_cols=15 Identities=27% Similarity=0.789 Sum_probs=12.9
Q ss_pred ccChhhheeeeccCC
Q psy14938 10 IFSEEEFKHWFLPRD 24 (96)
Q Consensus 10 ~fs~eev~Hw~lp~~ 24 (96)
.++.+|+.||++|..
T Consensus 257 ~L~~dEl~~WI~P~~ 271 (325)
T KOG4223|consen 257 KLDGDELLDWILPSE 271 (325)
T ss_pred ccCHHHHhcccCCCC
Confidence 468899999999975
No 7
>KOG0870|consensus
Probab=34.42 E-value=3.5 Score=31.03 Aligned_cols=21 Identities=48% Similarity=0.675 Sum_probs=18.6
Q ss_pred CCeEEEeeccccchhccccCc
Q psy14938 46 GFDVFNALDLMENKEFLGPLK 66 (96)
Q Consensus 46 gfDVfN~Ld~m~N~~fl~~lk 66 (96)
+=||++||+-|+++.|...||
T Consensus 68 adDVl~aL~Eiefs~f~~plk 88 (172)
T KOG0870|consen 68 ADDVLKALDEIEFSSFVNPLK 88 (172)
T ss_pred HHHHHHHHHHhchHHHhhHHH
Confidence 559999999999999988775
No 8
>PF08954 DUF1900: Domain of unknown function (DUF1900); InterPro: IPR015049 This domain is predominantly found in the structural protein coronin, and is duplicated in some sequences. It has no known function []. ; PDB: 2B4E_A 2AQ5_A.
Probab=19.59 E-value=53 Score=23.32 Aligned_cols=18 Identities=44% Similarity=0.824 Sum_probs=11.4
Q ss_pred ccccceeeeEEEeeccCC
Q psy14938 67 FGIGDGNLQYYLYNWKCP 84 (96)
Q Consensus 67 F~~GdG~L~YYLyNw~~~ 84 (96)
-|+|||.++||=++=..|
T Consensus 28 ~gKGD~~ir~yEv~~~~p 45 (136)
T PF08954_consen 28 AGKGDGNIRYYEVSDESP 45 (136)
T ss_dssp EETT-S-EEEEEE-SSTT
T ss_pred EeccCcEEEEEEEcCCCC
Confidence 378999999998766543
No 9
>PF11569 Homez: Homeodomain leucine-zipper encoding, Homez; PDB: 2YS9_A.
Probab=17.55 E-value=27 Score=21.70 Aligned_cols=15 Identities=27% Similarity=0.665 Sum_probs=10.4
Q ss_pred eccChhhheeeeccC
Q psy14938 9 PIFSEEEFKHWFLPR 23 (96)
Q Consensus 9 ~~fs~eev~Hw~lp~ 23 (96)
.-||-++|++||-.+
T Consensus 35 S~ms~qqVr~WFa~~ 49 (56)
T PF11569_consen 35 SRMSYQQVRDWFAER 49 (56)
T ss_dssp TT--HHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHh
Confidence 357889999999754
No 10
>PF11540 Dynein_IC2: Cytoplasmic dynein 1 intermediate chain 2; PDB: 2PG1_L 3FM7_D 2P2T_C.
Probab=17.08 E-value=92 Score=17.48 Aligned_cols=13 Identities=15% Similarity=0.463 Sum_probs=4.8
Q ss_pred eeeeccCCCeEEE
Q psy14938 17 KHWFLPRDGIVYT 29 (96)
Q Consensus 17 ~Hw~lp~~~Vi~t 29 (96)
++-+.|+|.|+||
T Consensus 14 ~~dipPkE~v~Ys 26 (33)
T PF11540_consen 14 QTDIPPKETVSYS 26 (33)
T ss_dssp EEEE------EEE
T ss_pred EeccCCccceeEe
Confidence 4567888988886
Done!