RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14938
(96 letters)
>1rxt_A Myristoyl-, glycylpeptide N-tetradecanoyltransferase 1; alpha-beta
structure, unique N-myristoyltransferase fold; 3.00A
{Homo sapiens} SCOP: d.108.1.2 d.108.1.2
Length = 496
Score = 132 bits (334), Expect = 1e-38
Identities = 62/141 (43%), Positives = 78/141 (55%), Gaps = 45/141 (31%)
Query: 1 FFLRFDLAPIFSEEEFKHWFLPRDGIVYTFVVEN-DGEITEII----------------- 42
+ +F L P+ S+EE +HWF P++ I+ TFVVEN +GE+T+ +
Sbjct: 356 YLKQFHLTPVMSQEEVEHWFYPQENIIDTFVVENANGEVTDFLSFYTLPSTIMNHPTHKS 415
Query: 43 ---------------------------LKEGFDVFNALDLMENKEFLGPLKFGIGDGNLQ 75
+GFDVFNALDLMENK FL LKFGIGDGNLQ
Sbjct: 416 LKAAYSFYNVHTQTPLLDLMSDALVLAKMKGFDVFNALDLMENKTFLEKLKFGIGDGNLQ 475
Query: 76 YYLYNWKCPSIPPNKIGLVLQ 96
YYLYNWKCPS+ K+G+VLQ
Sbjct: 476 YYLYNWKCPSMGAEKVGIVLQ 496
>3iu1_A Glycylpeptide N-tetradecanoyltransferase 1; N-myristoyltransferase,
NMT1, acyltransferase, phosphoprotein, structural
genomics; HET: MYA; 1.42A {Homo sapiens} PDB: 3iu2_A*
3iwe_A* 3jtk_A*
Length = 383
Score = 128 bits (324), Expect = 9e-38
Identities = 63/141 (44%), Positives = 78/141 (55%), Gaps = 45/141 (31%)
Query: 1 FFLRFDLAPIFSEEEFKHWFLPRDGIVYTFVVEN-DGEITEIIL---------------- 43
+ +F L P+ S+EE +HWF P++ I+ TFVVEN +GE+T+ +
Sbjct: 243 YLKQFHLTPVMSQEEVEHWFYPQENIIDTFVVENANGEVTDFLSFYTLPSTIMNHPTHKS 302
Query: 44 ----------------------------KEGFDVFNALDLMENKEFLGPLKFGIGDGNLQ 75
+GFDVFNALDLMENK FL LKFGIGDGNLQ
Sbjct: 303 LKAAYSFYNVHTQTPLLDLMSDALVLAKMKGFDVFNALDLMENKTFLEKLKFGIGDGNLQ 362
Query: 76 YYLYNWKCPSIPPNKIGLVLQ 96
YYLYNWKCPS+ K+GLVLQ
Sbjct: 363 YYLYNWKCPSMGAEKVGLVLQ 383
>2wuu_A N-myristoyltransferase; acyltransferase; HET: NHM; 1.42A
{Leishmania donovani} PDB: 3h5z_A* 4a2z_A* 4a30_A*
4a31_A* 4a32_A* 4a33_A* 2wsa_A*
Length = 421
Score = 129 bits (325), Expect = 1e-37
Identities = 45/139 (32%), Positives = 69/139 (49%), Gaps = 44/139 (31%)
Query: 1 FFLRFDLAPIFSEEEFKHWFLPRDGIVYTFVVENDGEITEII------------------ 42
+ FD+ P+FS+ E H+ LPRDG+V+T+VVEND ++T+
Sbjct: 282 YLDNFDVGPVFSDAEISHYLLPRDGVVFTYVVENDKKVTDFFSFYRIPSTVIGNSNYNIL 341
Query: 43 --------------------------LKEGFDVFNALDLMENKEFLGPLKFGIGDGNLQY 76
GFDV N +++++N+ F+ LKFG GDG+L+Y
Sbjct: 342 NAAYVHYYAATSMPLHQLILDLLIVAHSRGFDVCNMVEILDNRSFVEQLKFGAGDGHLRY 401
Query: 77 YLYNWKCPSIPPNKIGLVL 95
Y YNW P I P+++ LV+
Sbjct: 402 YFYNWAYPKIKPSQVALVM 420
>4a95_A Glycylpeptide N-tetradecanoyltransferase; malaria; HET: 9MT NHM;
1.55A {Plasmodium vivax}
Length = 384
Score = 127 bits (319), Expect = 5e-37
Identities = 48/139 (34%), Positives = 70/139 (50%), Gaps = 44/139 (31%)
Query: 1 FFLRFDLAPIFSEEEFKHWFLPRDGIVYTFVVENDGEITEII------------------ 42
+ +F+L +F++EE HWFLP + ++YT+V E +G+I ++I
Sbjct: 245 YLEQFNLYAVFTKEEIAHWFLPIENVIYTYVNEENGKIKDMISFYSLPSQILGNDKYSTL 304
Query: 43 --------------------------LKEGFDVFNALDLMENKEFLGPLKFGIGDGNLQY 76
+ FDVFNAL++M+NK LKFG GDG+L+Y
Sbjct: 305 NAAYSFYNVTTTATFKQLMQDAILLAKRNNFDVFNALEVMQNKSVFEDLKFGEGDGSLKY 364
Query: 77 YLYNWKCPSIPPNKIGLVL 95
YLYNWKC S P +G+VL
Sbjct: 365 YLYNWKCASFAPAHVGIVL 383
>1iyk_A Myristoyl-COA:protein N-myristoyltransferase; HET: MYA MIM; 2.30A
{Candida albicans} SCOP: d.108.1.2 d.108.1.2 PDB:
1iyl_A* 1nmt_A
Length = 392
Score = 92.4 bits (229), Expect = 6e-24
Identities = 41/166 (24%), Positives = 60/166 (36%), Gaps = 71/166 (42%)
Query: 1 FFLRFDLAPIFSEEEFKHWFLPRDG-----IVYTFVVEN-DGEITEII------------ 42
+ RFD+ +F+EEEFKHW L D +V ++VVE+ +G IT+
Sbjct: 226 YQERFDIVQLFTEEEFKHWMLGHDENSDSNVVKSYVVEDENGIITDYFSYYLLPFTVLDN 285
Query: 43 -----LKEGFDVFNA----------------------------------LDLMENKEFLG 63
L + + A L +N FL
Sbjct: 286 AQHDELGIAYLFYYASDSFEKPNYKKRLNELITDALITSKKFGVDVFNCLTCQDNTYFLK 345
Query: 64 PLKFGIGDGNLQYYLYNWKCPSIP--------------PNKIGLVL 95
KFG GDG L YYL+N++ + + IG+VL
Sbjct: 346 DCKFGSGDGFLNYYLFNYRTFPMDGGIDKKTKEVVEDQTSGIGVVL 391
>1iic_A Peptide N-myristoyltransferase; HET: MYA; 2.20A {Saccharomyces
cerevisiae} SCOP: d.108.1.2 d.108.1.2 PDB: 1iid_A*
2nmt_A* 2p6e_A* 2p6f_A* 2p6g_A*
Length = 422
Score = 75.9 bits (186), Expect = 6e-18
Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 13/65 (20%)
Query: 44 KEGFDVFNALDLMENKEFLGPLKFGIGDGNLQYYLYNWKCPSIP-------------PNK 90
DVFNAL +N FL LKFG GDG L +YL+N++ I +
Sbjct: 357 NANMDVFNALTSQDNTLFLDDLKFGPGDGFLNFYLFNYRAKPITGGLNPDNSNDIKRRSN 416
Query: 91 IGLVL 95
+G+V+
Sbjct: 417 VGVVM 421
Score = 57.0 bits (137), Expect = 2e-11
Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 13/61 (21%)
Query: 1 FFLRFDLAPIFSEEEFKHWFLPRDG------IVYTFVVEN-DGEITEIILKEGFDVFNAL 53
+ RF+L IF++EEF+H F+ + +++++VVE DG+IT F F +L
Sbjct: 246 YQSRFELIQIFTKEEFEHNFIGEESLPLDKQVIFSYVVEQPDGKIT------DFFSFYSL 299
Query: 54 D 54
Sbjct: 300 P 300
>1yr0_A AGR_C_1654P, phosphinothricin acetyltransferase; structural
genomics, protein structure initiative, NYSGXRC, PSI;
2.00A {Agrobacterium tumefaciens str} SCOP: d.108.1.1
Length = 175
Score = 28.3 bits (64), Expect = 0.23
Identities = 8/35 (22%), Positives = 14/35 (40%), Gaps = 2/35 (5%)
Query: 5 FDLAPIFSEEEFKHWFLPRDGIVY-TFVVENDGEI 38
++ + E K WF R + V DG++
Sbjct: 33 WNEVVV-DLENRKDWFAARTSRGFPVIVAILDGKV 66
>3dr6_A YNCA; acetyltransferase, csgid target, essential gene, IDP00086,
structural genomics, center for STRU genomics of
infectious diseases; HET: MSE; 1.75A {Salmonella
typhimurium} PDB: 3dr8_A*
Length = 174
Score = 27.9 bits (63), Expect = 0.32
Identities = 6/35 (17%), Positives = 14/35 (40%), Gaps = 2/35 (5%)
Query: 5 FDLAPIFSEEEFKHWFLPRDGIVY-TFVVENDGEI 38
++ + + W+ R + Y V E +G +
Sbjct: 32 WNDRTV-DTDNRLAWYEARQLLGYPVLVSEENGVV 65
>1xhf_A DYE resistance, aerobic respiration control protein ARCA;
two-component system, gene regulation, transcription
factor, anoxic redox control; 2.15A {Escherichia coli}
SCOP: c.23.1.1 PDB: 1xhe_A
Length = 123
Score = 27.4 bits (62), Expect = 0.51
Identities = 9/28 (32%), Positives = 14/28 (50%), Gaps = 4/28 (14%)
Query: 31 VVENDGEITEII----LKEGFDVFNALD 54
+VE++ + EG+DVF A D
Sbjct: 8 IVEDELVTRNTLKSIFEAEGYDVFEATD 35
>1lba_A T7 lysozyme; hydrolase(acting on linear amides); 2.20A
{Enterobacteria phage T7} SCOP: d.118.1.1 PDB: 1aro_L
Length = 146
Score = 27.4 bits (61), Expect = 0.55
Identities = 6/32 (18%), Positives = 13/32 (40%), Gaps = 2/32 (6%)
Query: 11 FSEEEFKHWFLPR--DGIVYTFVVENDGEITE 40
E + W + + Y F+++ DG +
Sbjct: 23 VGVREIRQWHKEQGWLDVGYHFIIKRDGTVEA 54
>1rk6_A D-aminoacylase; TIM barrel, beta barrel, insertion, hydrolase;
1.43A {Alcaligenes faecalis} SCOP: b.92.1.6 b.92.1.6
c.1.9.11 PDB: 1rjp_A 1v51_A 1rjq_A 1rjr_A 1rk5_A 1v4y_A
1m7j_A
Length = 496
Score = 27.7 bits (61), Expect = 0.62
Identities = 11/39 (28%), Positives = 14/39 (35%), Gaps = 4/39 (10%)
Query: 5 FDLAPIFSEEEFKHWFLPRDGIVYTFV----VENDGEIT 39
FD A + F+H GI +V V D T
Sbjct: 445 FDPATVADSATFEHPTERAAGIHSVYVNGAAVWEDQSFT 483
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH
sides, signaling protein; HET: BFD; 1.80A {Thermotoga
maritima} PDB: 3dgf_C 3dge_C
Length = 122
Score = 26.6 bits (59), Expect = 0.84
Identities = 7/28 (25%), Positives = 16/28 (57%), Gaps = 4/28 (14%)
Query: 31 VVENDGEITEII----LKEGFDVFNALD 54
+V++ + +I+ KEG++V A +
Sbjct: 7 LVDDSAVLRKIVSFNLKKEGYEVIEAEN 34
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog,
signaling protein; 1.65A {Streptococcus pneumoniae}
SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A
1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Length = 120
Score = 26.6 bits (60), Expect = 0.84
Identities = 9/28 (32%), Positives = 18/28 (64%), Gaps = 4/28 (14%)
Query: 31 VVENDGEITEII----LKEGFDVFNALD 54
+V+++ I++II KEG++V A +
Sbjct: 6 IVDDEKPISDIIKFNMTKEGYEVVTAFN 33
>3t6k_A Response regulator receiver; flavodoxin-like, structural
genomics, joint center for struc genomics, JCSG,
protein structure initiative; HET: MSE; 1.86A
{Chloroflexus aurantiacus}
Length = 136
Score = 26.7 bits (60), Expect = 0.91
Identities = 6/28 (21%), Positives = 14/28 (50%), Gaps = 4/28 (14%)
Query: 31 VVENDGEITEIIL----KEGFDVFNALD 54
+V++D + E++ G++V A
Sbjct: 9 IVDDDDTVAEMLELVLRGAGYEVRRAAS 36
>3n53_A Response regulator receiver modulated diguanylate; diguanylate
cyclase, protein structure I II(PSI II), NYSGXRC,
structural genomics; 2.20A {Pelobacter carbinolicus}
Length = 140
Score = 26.4 bits (59), Expect = 1.1
Identities = 2/27 (7%), Positives = 9/27 (33%), Gaps = 3/27 (11%)
Query: 31 VVENDGEITEII---LKEGFDVFNALD 54
+++ + L + V + +
Sbjct: 8 IIDQQDFSRIELKNFLDSEYLVIESKN 34
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated,
receiver domain, cytoplasm, DNA-binding,
phosphoprotein, transcription regulation; 1.95A
{Bacillus subtilis} PDB: 2zwm_A
Length = 120
Score = 26.2 bits (59), Expect = 1.2
Identities = 10/28 (35%), Positives = 17/28 (60%), Gaps = 4/28 (14%)
Query: 31 VVENDGEITEII----LKEGFDVFNALD 54
VV+++ I +I+ KEG++V A D
Sbjct: 7 VVDDEKPIADILEFNLRKEGYEVHCAHD 34
>3cg4_A Response regulator receiver domain protein (CHEY-; structural
genomics, unknown function; HET: MSE; 1.61A
{Methanospirillum hungatei jf-1}
Length = 142
Score = 26.4 bits (59), Expect = 1.3
Identities = 5/28 (17%), Positives = 12/28 (42%), Gaps = 4/28 (14%)
Query: 31 VVENDGEITEII----LKEGFDVFNALD 54
+V++D + + GF + +A
Sbjct: 12 IVDDDAHVRIAVKTILSDAGFHIISADS 39
>3gip_A N-acyl-D-glutamate deacylase; amidohydrolase family, hydrolase;
1.50A {Bordetella bronchiseptica} PDB: 3giq_A*
Length = 480
Score = 26.5 bits (58), Expect = 1.3
Identities = 7/39 (17%), Positives = 9/39 (23%), Gaps = 4/39 (10%)
Query: 5 FDLAPIFSEEEFKHWFLPRDGIVYTFV----VENDGEIT 39
FD + + L GI V V
Sbjct: 431 FDPDTVADRATWDEPTLASVGIAGVLVNGAEVFPQPPAD 469
>1ufz_A Hypothetical protein BAB28515; HBS1-like domain, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, translatio; NMR {Mus musculus} SCOP:
a.5.9.1
Length = 83
Score = 25.8 bits (56), Expect = 1.4
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 35 DGEITEIILKEGFDVFNALDLMENKE 60
D +TE ILK FDV AL ++ ++
Sbjct: 51 DDILTEAILKHKFDVQKALSVVLEQD 76
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional
regulatory protein, alpha/beta doubly wound fold,
phosphorylation; 1.60A {Bacillus subtilis} SCOP:
c.23.1.1
Length = 136
Score = 25.9 bits (58), Expect = 1.5
Identities = 8/28 (28%), Positives = 15/28 (53%), Gaps = 4/28 (14%)
Query: 31 VVENDGEITEII----LKEGFDVFNALD 54
VV+++ I ++ + G+DV A D
Sbjct: 8 VVDDEESIVTLLQYNLERSGYDVITASD 35
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural
genomics; 2.89A {Clostridium difficile}
Length = 136
Score = 25.9 bits (58), Expect = 1.5
Identities = 3/28 (10%), Positives = 13/28 (46%), Gaps = 4/28 (14%)
Query: 31 VVENDGEITEII----LKEGFDVFNALD 54
+++ D + + + ++G + A +
Sbjct: 9 IIDGDKDNCQKLKGFLEEKGISIDLAYN 36
>2q0y_A GCN5-related N-acetyltransferase; YP_295895.1, acetyltransferase
(GNAT) family, structural genomics, joint center for ST
genomics; HET: MSE; 1.80A {Ralstonia eutropha JMP134}
Length = 153
Score = 25.9 bits (57), Expect = 1.7
Identities = 10/28 (35%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Query: 13 EEEFKHWFLPR--DGIVYTFVVENDGEI 38
++ F+ W LPR DG + +V+E G
Sbjct: 37 QDPFRDWLLPRLADGSYFGWVMEEGGAP 64
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription
factor, sensory transduction, phosphate regula
transcription regulation; 1.45A {Escherichia coli} PDB:
2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Length = 127
Score = 25.9 bits (58), Expect = 1.8
Identities = 9/28 (32%), Positives = 14/28 (50%), Gaps = 4/28 (14%)
Query: 31 VVENDGEITEIIL----KEGFDVFNALD 54
VVE++ I E++ + GF A D
Sbjct: 7 VVEDEAPIREMVCFVLEQNGFQPVEAED 34
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 26.4 bits (57), Expect = 1.9
Identities = 17/78 (21%), Positives = 29/78 (37%), Gaps = 10/78 (12%)
Query: 7 LAPIFSEEEFKHWFLPRDGIVYTFVVENDGEITEIIL---KEGFDVFNALDLMENKEFL- 62
I S+EE H + +D + T + +L +E F L N +FL
Sbjct: 42 PKSILSKEEIDHIIMSKDAVSGTLR------LFWTLLSKQEEMVQKFVEEVLRINYKFLM 95
Query: 63 GPLKFGIGDGNLQYYLYN 80
P+K ++ +Y
Sbjct: 96 SPIKTEQRQPSMMTRMYI 113
>2gkg_A Response regulator homolog; social motility, receiver domain,
signalling, high resolutio signaling protein; 1.00A
{Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Length = 127
Score = 25.2 bits (56), Expect = 2.7
Identities = 7/28 (25%), Positives = 12/28 (42%), Gaps = 4/28 (14%)
Query: 31 VVENDGEITEII----LKEGFDVFNALD 54
+VE+D ++ + GF V D
Sbjct: 10 IVESDTALSATLRSALEGRGFTVDETTD 37
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication,
DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Length = 200
Score = 25.6 bits (55), Expect = 3.1
Identities = 5/14 (35%), Positives = 9/14 (64%)
Query: 65 LKFGIGDGNLQYYL 78
+F + G LQ++L
Sbjct: 179 FQFDLKSGFLQFFL 192
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory
system, transcription regulation, phosphorylation, OMPR
family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Length = 238
Score = 25.2 bits (56), Expect = 3.1
Identities = 9/28 (32%), Positives = 14/28 (50%), Gaps = 4/28 (14%)
Query: 31 VVENDGEITEIIL----KEGFDVFNALD 54
VV++D + E++ EGFD D
Sbjct: 10 VVDDDASLAEMLTIVLRGEGFDTAVIGD 37
>2oqr_A Sensory transduction protein REGX3; response regulator,
winged-helix-turn-helix, DNA-binding, 3D swapping, two
component system; 2.03A {Mycobacterium tuberculosis
H37RV}
Length = 230
Score = 25.1 bits (56), Expect = 4.0
Identities = 7/28 (25%), Positives = 14/28 (50%), Gaps = 4/28 (14%)
Query: 31 VVENDGEITEII----LKEGFDVFNALD 54
+VE++ + + + KEGF+ D
Sbjct: 9 IVEDEESLADPLAFLLRKEGFEATVVTD 36
>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding,
protein-solvent interaction, oxidoreductase; HET: NAD;
1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1
PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A
1hlp_A* 2hlp_A
Length = 303
Score = 24.8 bits (55), Expect = 4.6
Identities = 7/31 (22%), Positives = 9/31 (29%)
Query: 41 IILKEGFDVFNALDLMENKEFLGPLKFGIGD 71
I KE V A D + + G
Sbjct: 34 IPDKEDDTVGQAADTNHGIAYDSNTRVRQGG 64
>2ayi_A Aminopeptidase T; metallopeptidase, hydrolase; 3.70A {Thermus
thermophilus} SCOP: e.60.1.1
Length = 408
Score = 25.2 bits (54), Expect = 5.1
Identities = 9/53 (16%), Positives = 16/53 (30%), Gaps = 3/53 (5%)
Query: 35 DGEITEIILKEGFDVFNA-LDLMENKEFLGPLKFGIGDGNLQYYLYNWKCPSI 86
G E+ ++G +V LD E LG + + +
Sbjct: 286 RGFAVEVRAEKGEEVLRRLLDTDEGARRLG--EVALVPADNPIAKTGLVFFDT 336
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription
termination, RNA processi recognition, RRM; HET: CAF;
1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Length = 97
Score = 24.2 bits (53), Expect = 5.2
Identities = 8/37 (21%), Positives = 14/37 (37%), Gaps = 9/37 (24%)
Query: 36 GEITEIILKEGF---------DVFNALDLMENKEFLG 63
G I +I +K F V +A++ + G
Sbjct: 48 GHIMQINIKNAFGFIQFDNPQSVRDAIEXESQEMNFG 84
>3nhm_A Response regulator; protein structure initiative II(PSI II),
NYSGXRC, structural genomics; 2.19A {Myxococcus
xanthus}
Length = 133
Score = 24.1 bits (53), Expect = 7.7
Identities = 9/27 (33%), Positives = 12/27 (44%), Gaps = 3/27 (11%)
Query: 31 VVENDGEITEII---LKEGFDVFNALD 54
+VEN + E + L FD A D
Sbjct: 9 IVENSWTMRETLRLLLSGEFDCTTAAD 35
>1j3g_A AMPD protein, AMPD; mixed alpha-beta, hydrolase; NMR {Citrobacter
freundii} SCOP: d.118.1.1 PDB: 2y28_A 2y2b_A* 2y2c_A
2y2d_A 2y2e_A
Length = 187
Score = 24.2 bits (53), Expect = 7.7
Identities = 5/18 (27%), Positives = 9/18 (50%)
Query: 18 HWFLPRDGIVYTFVVEND 35
H + RDG + +V +
Sbjct: 75 HCLIRRDGEIVQYVPFDK 92
>3c3m_A Response regulator receiver protein; structural genomics, unknown
function, PSI-2, protein struct initiative; HET: MSE;
1.70A {Methanoculleus marisnigri JR1}
Length = 138
Score = 24.0 bits (53), Expect = 8.3
Identities = 5/28 (17%), Positives = 12/28 (42%), Gaps = 4/28 (14%)
Query: 31 VVENDGEITEIIL----KEGFDVFNALD 54
VV++ I ++ + + G+ A
Sbjct: 8 VVDDSPMIVDVFVTMLERGGYRPITAFS 35
>2qjv_A Uncharacterized IOLB-like protein; structural genomics, joint
center for structural genomics, J protein structure
initiative, PSI-2; HET: MLY MSE; 1.90A {Salmonella
typhimurium LT2}
Length = 270
Score = 24.1 bits (52), Expect = 9.3
Identities = 11/38 (28%), Positives = 15/38 (39%)
Query: 13 EEEFKHWFLPRDGIVYTFVVENDGEITEIILKEGFDVF 50
EE + H F P G V +D + E + DV
Sbjct: 185 EETYYHRFNPPQGFCLQRVYTDDRSLDECMAVYNRDVV 222
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.326 0.150 0.479
Gapped
Lambda K H
0.267 0.0563 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,650,284
Number of extensions: 91350
Number of successful extensions: 289
Number of sequences better than 10.0: 1
Number of HSP's gapped: 287
Number of HSP's successfully gapped: 55
Length of query: 96
Length of database: 6,701,793
Length adjustment: 62
Effective length of query: 34
Effective length of database: 4,970,691
Effective search space: 169003494
Effective search space used: 169003494
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (23.8 bits)