RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14938
(96 letters)
>d1rxta2 d.108.1.2 (A:219-455) N-myristoyl transferase, NMT {Human
(Homo sapiens) [TaxId: 9606]}
Length = 201
Score = 134 bits (340), Expect = 2e-42
Identities = 62/138 (44%), Positives = 77/138 (55%), Gaps = 45/138 (32%)
Query: 4 RFDLAPIFSEEEFKHWFLPRDGIVYTFVVEN-DGEITEII-------------------- 42
+F L P+ S+EE +HWF P++ I+ TFVVEN +GE+T+ +
Sbjct: 64 QFHLTPVMSQEEVEHWFYPQENIIDTFVVENANGEVTDFLSFYTLPSTIMNHPTHKSLKA 123
Query: 43 ------------------------LKEGFDVFNALDLMENKEFLGPLKFGIGDGNLQYYL 78
+GFDVFNALDLMENK FL LKFGIGDGNLQYYL
Sbjct: 124 AYSFYNVHTQTPLLDLMSDALVLAKMKGFDVFNALDLMENKTFLEKLKFGIGDGNLQYYL 183
Query: 79 YNWKCPSIPPNKIGLVLQ 96
YNWKCPS+ K+G+VLQ
Sbjct: 184 YNWKCPSMGAEKVGIVLQ 201
>d1iyka2 d.108.1.2 (A:225-451) N-myristoyl transferase, NMT {Yeast
(Candida albicans) [TaxId: 5476]}
Length = 227
Score = 115 bits (289), Expect = 2e-34
Identities = 46/163 (28%), Positives = 62/163 (38%), Gaps = 71/163 (43%)
Query: 4 RFDLAPIFSEEEFKHWFLPRD-----GIVYTFVVEN-DGEITE----------------- 40
RFD+ +F+EEEFKHW L D +V ++VVE+ +G IT+
Sbjct: 64 RFDIVQLFTEEEFKHWMLGHDENSDSNVVKSYVVEDENGIITDYFSYYLLPFTVLDNAQH 123
Query: 41 ---------------------------------IILK-EGFDVFNALDLMENKEFLGPLK 66
I K G DVFN L +N FL K
Sbjct: 124 DELGIAYLFYYASDSFEKPNYKKRLNELITDALITSKKFGVDVFNCLTCQDNTYFLKDCK 183
Query: 67 FGIGDGNLQYYLYNWKCPSIP--------------PNKIGLVL 95
FG GDG L YYL+N++ + + IG+VL
Sbjct: 184 FGSGDGFLNYYLFNYRTFPMDGGIDKKTKEVVEDQTSGIGVVL 226
>d1iica2 d.108.1.2 (A:219-455) N-myristoyl transferase, NMT {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 237
Score = 87.6 bits (217), Expect = 2e-23
Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 13/65 (20%)
Query: 44 KEGFDVFNALDLMENKEFLGPLKFGIGDGNLQYYLYNWKCPSIP-------------PNK 90
DVFNAL +N FL LKFG GDG L +YL+N++ I +
Sbjct: 172 NANMDVFNALTSQDNTLFLDDLKFGPGDGFLNFYLFNYRAKPITGGLNPDNSNDIKRRSN 231
Query: 91 IGLVL 95
+G+V+
Sbjct: 232 VGVVM 236
Score = 55.7 bits (134), Expect = 2e-11
Identities = 17/46 (36%), Positives = 30/46 (65%), Gaps = 7/46 (15%)
Query: 4 RFDLAPIFSEEEFKHWFLPRDG------IVYTFVVEN-DGEITEII 42
RF+L IF++EEF+H F+ + +++++VVE DG+IT+
Sbjct: 64 RFELIQIFTKEEFEHNFIGEESLPLDKQVIFSYVVEQPDGKITDFF 109
>d1ufza_ a.5.9.1 (A:) HBS1-like protein {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 83
Score = 27.1 bits (60), Expect = 0.17
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 35 DGEITEIILKEGFDVFNALDLMENKEFLGP 64
D +TE ILK FDV AL ++ ++ GP
Sbjct: 51 DDILTEAILKHKFDVQKALSVVLEQDGSGP 80
>d1m7ja2 b.92.1.6 (A:420-480) N-acyl-D-aminoacid amidohydrolase
{Alcaligenes faecalis [TaxId: 511]}
Length = 61
Score = 25.5 bits (56), Expect = 0.37
Identities = 11/40 (27%), Positives = 14/40 (35%), Gaps = 4/40 (10%)
Query: 5 FDLAPIFSEEEFKHWFLPRDGIVYTFV----VENDGEITE 40
FD A + F+H GI +V V D T
Sbjct: 13 FDPATVADSATFEHPTERAAGIHSVYVNGAAVWEDQSFTG 52
>d1p0ha_ d.108.1.1 (A:) Mycothiol synthase MshD {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 308
Score = 26.6 bits (57), Expect = 0.42
Identities = 5/35 (14%), Positives = 8/35 (22%)
Query: 4 RFDLAPIFSEEEFKHWFLPRDGIVYTFVVENDGEI 38
D E+ + R + G I
Sbjct: 25 AVDGVAPVGEQVLRELGQQRTEHLLVAGSRPGGPI 59
>d3cdda1 b.106.1.1 (A:181-348) Baseplate protein gpP {Shewanella
oneidensis [TaxId: 70863]}
Length = 168
Score = 25.2 bits (55), Expect = 1.4
Identities = 4/23 (17%), Positives = 10/23 (43%), Gaps = 2/23 (8%)
Query: 29 TFVVENDGEITEIILK--EGFDV 49
F ++ G + I + + D+
Sbjct: 142 LFSEDDAGRLAVISVVRPDAMDI 164
>d1krha3 d.15.4.2 (A:2-105) Benzoate dioxygenase reductase,
N-terminal domain {Acinetobacter sp. [TaxId: 472]}
Length = 104
Score = 24.9 bits (54), Expect = 1.4
Identities = 2/27 (7%), Positives = 11/27 (40%)
Query: 23 RDGIVYTFVVENDGEITEIILKEGFDV 49
DG+ + +++ ++ ++
Sbjct: 10 EDGVTRFICIAQGETLSDAAYRQQINI 36
>d1n1ja_ a.22.1.3 (A:) Nuclear transcription factor Y subunit beta
(Nf-Yb3) {Human (Homo sapiens) [TaxId: 9606]}
Length = 87
Score = 22.9 bits (49), Expect = 6.2
Identities = 5/19 (26%), Positives = 10/19 (52%)
Query: 48 DVFNALDLMENKEFLGPLK 66
D+ A+ + ++ PLK
Sbjct: 61 DILFAMSTLGFDSYVEPLK 79
>d1yrea1 d.108.1.1 (A:11-193) Hypothetical protein PA3270
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 183
Score = 23.3 bits (49), Expect = 7.2
Identities = 5/37 (13%), Positives = 12/37 (32%)
Query: 2 FLRFDLAPIFSEEEFKHWFLPRDGIVYTFVVENDGEI 38
L++ P + + R+G V ++
Sbjct: 33 ALQYMDGPTRPDWYRQSLAEQREGRALPLAVRLGVQL 69
>d1e6ba1 a.45.1.1 (A:88-220) Class zeta GST {Mouse-ear cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 133
Score = 22.9 bits (48), Expect = 8.1
Identities = 9/80 (11%), Positives = 21/80 (26%)
Query: 4 RFDLAPIFSEEEFKHWFLPRDGIVYTFVVENDGEITEIILKEGFDVFNALDLMENKEFLG 63
++ + S + I VE + +GF L + +
Sbjct: 14 YQAMSIVLSGIQPHQNLAVIRYIEEKINVEEKTAWVNNAITKGFTALEKLLVNCAGKHAT 73
Query: 64 PLKFGIGDGNLQYYLYNWKC 83
+ + D L ++
Sbjct: 74 GDEIYLADLFLAPQIHGAIN 93
>d1ys7a2 c.23.1.1 (A:7-127) Transcriptional regulatory protein
PrrA, N-terminal domain {Mycobacterium tuberculosis
[TaxId: 1773]}
Length = 121
Score = 22.7 bits (48), Expect = 9.6
Identities = 9/58 (15%), Positives = 21/58 (36%), Gaps = 4/58 (6%)
Query: 31 VVENDGEITEIIL----KEGFDVFNALDLMENKEFLGPLKFGIGDGNLQYYLYNWKCP 84
VV++D ++ + GF+V A+D E + ++ + +
Sbjct: 6 VVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATENRPDAIVLDINMPVLDGVSV 63
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.326 0.150 0.479
Gapped
Lambda K H
0.267 0.0629 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 421,526
Number of extensions: 19025
Number of successful extensions: 77
Number of sequences better than 10.0: 1
Number of HSP's gapped: 75
Number of HSP's successfully gapped: 24
Length of query: 96
Length of database: 2,407,596
Length adjustment: 59
Effective length of query: 37
Effective length of database: 1,597,526
Effective search space: 59108462
Effective search space used: 59108462
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.1 bits)