BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14939
(971 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
Length = 87
Score = 89.4 bits (220), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 43/81 (53%), Positives = 56/81 (69%), Gaps = 1/81 (1%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 91
Y C CGK F +S+NL +H RTHTGE+PYKC C +SFS SS+LQ+H R H EKP+KC
Sbjct: 5 YKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQR-THTGEKPYKC 63
Query: 92 PLCDRCFGQQTNLDRHLKKHE 112
P C + F + +L RH + H+
Sbjct: 64 PECGKSFSRSDHLSRHQRTHQ 84
Score = 89.4 bits (220), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 43/81 (53%), Positives = 56/81 (69%), Gaps = 1/81 (1%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 822
Y C CGK F +S+NL +H RTHTGE+PYKC C +SFS SS+LQ+H R H EKP+KC
Sbjct: 5 YKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQR-THTGEKPYKC 63
Query: 823 PLCDRCFGQQTNLDRHLKKHE 843
P C + F + +L RH + H+
Sbjct: 64 PECGKSFSRSDHLSRHQRTHQ 84
Score = 75.1 bits (183), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 53/82 (64%), Gaps = 1/82 (1%)
Query: 225 FPCENCTKVFSDPSNLQRHIRTHHVGARQHACQECGKTFATSSGLKQHTHIHSSVKPFRC 284
+ C C K FS SNLQ+H RTH G + + C ECGK+F+ SS L++H H+ KP++C
Sbjct: 5 YKCPECGKSFSQSSNLQKHQRTH-TGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKC 63
Query: 285 EVCHKAYTQFSNLCRHKRMHAN 306
C K++++ +L RH+R H N
Sbjct: 64 PECGKSFSRSDHLSRHQRTHQN 85
Score = 63.5 bits (153), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 30/55 (54%), Positives = 38/55 (69%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKE 86
Y C CGK F +S++L +H RTHTGE+PYKC C +SFS S +L RH R NK+
Sbjct: 33 YKCPECGKSFSQSSDLQKHQRTHTGEKPYKCPECGKSFSRSDHLSRHQRTHQNKK 87
Score = 63.5 bits (153), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 30/55 (54%), Positives = 38/55 (69%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKE 817
Y C CGK F +S++L +H RTHTGE+PYKC C +SFS S +L RH R NK+
Sbjct: 33 YKCPECGKSFSQSSDLQKHQRTHTGEKPYKCPECGKSFSRSDHLSRHQRTHQNKK 87
Score = 63.2 bits (152), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
Query: 254 HACQECGKTFATSSGLKQHTHIHSSVKPFRCEVCHKAYTQFSNLCRHKRMHANCRMQIKC 313
+ C ECGK+F+ SS L++H H+ KP++C C K+++Q S+L +H+R H KC
Sbjct: 5 YKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTG-EKPYKC 63
Query: 314 VKCDQSFSTVTSLSKHKR 331
+C +SFS LS+H+R
Sbjct: 64 PECGKSFSRSDHLSRHQR 81
Score = 60.8 bits (146), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 29/58 (50%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
Query: 57 EQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKHEAD 114
E+PYKC C +SFS SSNLQ+H R H EKP+KCP C + F Q ++L +H + H +
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQR-THTGEKPYKCPECGKSFSQSSDLQKHQRTHTGE 58
Score = 60.8 bits (146), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 29/58 (50%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
Query: 788 EQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKHEAD 845
E+PYKC C +SFS SSNLQ+H R H EKP+KCP C + F Q ++L +H + H +
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQR-THTGEKPYKCPECGKSFSQSSDLQKHQRTHTGE 58
Score = 56.6 bits (135), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Query: 198 YRCESCSQTFCWRPHLNFHQAQVHGRK-FPCENCTKVFSDPSNLQRHIRTHHVGARQHAC 256
Y+C C ++F +L HQ G K + C C K FS S+LQ+H RTH G + + C
Sbjct: 5 YKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTH-TGEKPYKC 63
Query: 257 QECGKTFATSSGLKQHTHIHSSVK 280
ECGK+F+ S L +H H + K
Sbjct: 64 PECGKSFSRSDHLSRHQRTHQNKK 87
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 280 KPFRCEVCHKAYTQFSNLCRHKRMHANCRMQIKCVKCDQSFSTVTSLSKHKRFCDSTTPG 339
KP++C C K+++Q SNL +H+R H KC +C +SFS + L KH+R P
Sbjct: 3 KPYKCPECGKSFSQSSNLQKHQRTHTG-EKPYKCPECGKSFSQSSDLQKHQRTHTGEKPY 61
Query: 340 TTPSGQNSLSAMSH 353
P S S H
Sbjct: 62 KCPECGKSFSRSDH 75
>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
Length = 190
Score = 88.2 bits (217), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/153 (35%), Positives = 77/153 (50%), Gaps = 3/153 (1%)
Query: 198 YRCESCSQTFCWRPHLNFHQAQVHGRK-FPCENCTKVFSDPSNLQRHIRTHHVGARQHAC 256
Y C C ++F HL HQ G K + C C K FSD +L RH RTH G + + C
Sbjct: 22 YACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTH-TGEKPYKC 80
Query: 257 QECGKTFATSSGLKQHTHIHSSVKPFRCEVCHKAYTQFSNLCRHKRMHANCRMQIKCVKC 316
ECGK+F+ + L+ H H+ KP+ C C K+++Q ++L H+R H KC +C
Sbjct: 81 PECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTG-EKPYKCPEC 139
Query: 317 DQSFSTVTSLSKHKRFCDSTTPGTTPSGQNSLS 349
+SFS +L H+R P P S S
Sbjct: 140 GKSFSREDNLHTHQRTHTGEKPYKCPECGKSFS 172
Score = 85.1 bits (209), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/135 (37%), Positives = 76/135 (56%), Gaps = 3/135 (2%)
Query: 198 YRCESCSQTFCWRPHLNFHQAQVHGRK-FPCENCTKVFSDPSNLQRHIRTHHVGARQHAC 256
Y+C C ++F + L HQ G K + C C K FS +NL+ H RTH G + +AC
Sbjct: 50 YKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTH-TGEKPYAC 108
Query: 257 QECGKTFATSSGLKQHTHIHSSVKPFRCEVCHKAYTQFSNLCRHKRMHANCRMQIKCVKC 316
ECGK+F+ + L+ H H+ KP++C C K++++ NL H+R H KC +C
Sbjct: 109 PECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTG-EKPYKCPEC 167
Query: 317 DQSFSTVTSLSKHKR 331
+SFS +L+ H+R
Sbjct: 168 GKSFSRRDALNVHQR 182
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/149 (34%), Positives = 70/149 (46%), Gaps = 7/149 (4%)
Query: 3 PYANKPFQEILTSQNNAVNGSSSKTTKDRYACKYCGKVFPRSANLTRHLRTHTGEQPYKC 62
PYA + + ++ + T + Y C CGK F +LTRH RTHTGE+PYKC
Sbjct: 21 PYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKC 80
Query: 63 KYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKHEADDGSGLVSM 122
C +SFS +NL+ H R H EKP+ CP C + F Q +L H + H +
Sbjct: 81 PECGKSFSQRANLRAHQR-THTGEKPYACPECGKSFSQLAHLRAHQRTHTGEK------P 133
Query: 123 ADSPESSNENEREDAYFDEIRSFMGKVTY 151
PE RED R+ G+ Y
Sbjct: 134 YKCPECGKSFSREDNLHTHQRTHTGEKPY 162
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/149 (34%), Positives = 70/149 (46%), Gaps = 7/149 (4%)
Query: 734 PYANKPFQEILTSQNNAVNGSSSKTTKDRYACKYCGKVFPRSANLTRHLRTHTGEQPYKC 793
PYA + + ++ + T + Y C CGK F +LTRH RTHTGE+PYKC
Sbjct: 21 PYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKC 80
Query: 794 KYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKHEADDGSGLVSM 853
C +SFS +NL+ H R H EKP+ CP C + F Q +L H + H +
Sbjct: 81 PECGKSFSQRANLRAHQR-THTGEKPYACPECGKSFSQLAHLRAHQRTHTGEK------P 133
Query: 854 ADSPESSNENEREDAYFDEIRSFMGKVTY 882
PE RED R+ G+ Y
Sbjct: 134 YKCPECGKSFSREDNLHTHQRTHTGEKPY 162
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/121 (38%), Positives = 65/121 (53%), Gaps = 6/121 (4%)
Query: 727 LLRSQISPYANKPFQ-----EILTSQNNAVNGSSSKTTKDRYACKYCGKVFPRSANLTRH 781
L R Q + KP++ + + + N + T + YAC CGK F + A+L H
Sbjct: 65 LTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAH 124
Query: 782 LRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKK 841
RTHTGE+PYKC C +SFS NL H R H EKP+KCP C + F ++ L+ H +
Sbjct: 125 QRTHTGEKPYKCPECGKSFSREDNLHTHQR-THTGEKPYKCPECGKSFSRRDALNVHQRT 183
Query: 842 H 842
H
Sbjct: 184 H 184
Score = 79.3 bits (194), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 40/80 (50%), Positives = 50/80 (62%), Gaps = 1/80 (1%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 91
YAC CGK F + A+L H RTHTGE+PYKC C +SFS NL H R H EKP+KC
Sbjct: 106 YACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQR-THTGEKPYKC 164
Query: 92 PLCDRCFGQQTNLDRHLKKH 111
P C + F ++ L+ H + H
Sbjct: 165 PECGKSFSRRDALNVHQRTH 184
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 64/226 (28%), Positives = 87/226 (38%), Gaps = 56/226 (24%)
Query: 56 GEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKHEADD 115
GE+PY C C +SFS S +L H R H EKP+KCP C + F + +L RH + H
Sbjct: 18 GEKPYACPECGKSFSRSDHLAEHQR-THTGEKPYKCPECGKSFSDKKDLTRHQRTH---- 72
Query: 116 GSGLVSMADSPESSNENEREDAYFDEIRSFMGKVTYSGDVAYNQENLYTGNNPPSPLIXX 175
+ P E + + +R+ + +TG P
Sbjct: 73 ------TGEKPYKCPECGKSFSQRANLRA--------------HQRTHTGEKP------- 105
Query: 176 XXXXXXXXXXHLITGHRYPPDQYRCESCSQTFCWRPHLNFHQAQVHGRK-FPCENCTKVF 234
Y C C ++F HL HQ G K + C C K F
Sbjct: 106 ----------------------YACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSF 143
Query: 235 SDPSNLQRHIRTHHVGARQHACQECGKTFATSSGLKQHTHIHSSVK 280
S NL H RTH G + + C ECGK+F+ L H H+ K
Sbjct: 144 SREDNLHTHQRTH-TGEKPYKCPECGKSFSRRDALNVHQRTHTGKK 188
Score = 70.1 bits (170), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 59/110 (53%), Gaps = 2/110 (1%)
Query: 198 YRCESCSQTFCWRPHLNFHQAQVHGRK-FPCENCTKVFSDPSNLQRHIRTHHVGARQHAC 256
Y+C C ++F R +L HQ G K + C C K FS ++L+ H RTH G + + C
Sbjct: 78 YKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTH-TGEKPYKC 136
Query: 257 QECGKTFATSSGLKQHTHIHSSVKPFRCEVCHKAYTQFSNLCRHKRMHAN 306
ECGK+F+ L H H+ KP++C C K++++ L H+R H
Sbjct: 137 PECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTG 186
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 55/104 (52%), Gaps = 1/104 (0%)
Query: 250 GARQHACQECGKTFATSSGLKQHTHIHSSVKPFRCEVCHKAYTQFSNLCRHKRMHANCRM 309
G + +AC ECGK+F+ S L +H H+ KP++C C K+++ +L RH+R H
Sbjct: 18 GEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTG-EK 76
Query: 310 QIKCVKCDQSFSTVTSLSKHKRFCDSTTPGTTPSGQNSLSAMSH 353
KC +C +SFS +L H+R P P S S ++H
Sbjct: 77 PYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAH 120
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 787 GEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKHEAD 845
GE+PY C C +SFS S +L H R H EKP+KCP C + F + +L RH + H +
Sbjct: 18 GEKPYACPECGKSFSRSDHLAEHQR-THTGEKPYKCPECGKSFSDKKDLTRHQRTHTGE 75
Score = 33.5 bits (75), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 5/69 (7%)
Query: 726 HLLRSQISPYANKPFQ-----EILTSQNNAVNGSSSKTTKDRYACKYCGKVFPRSANLTR 780
HL Q + KP++ + + ++N + T + Y C CGK F R L
Sbjct: 120 HLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNV 179
Query: 781 HLRTHTGEQ 789
H RTHTG++
Sbjct: 180 HQRTHTGKK 188
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 26/56 (46%)
Query: 3 PYANKPFQEILTSQNNAVNGSSSKTTKDRYACKYCGKVFPRSANLTRHLRTHTGEQ 58
PY + + ++N + T + Y C CGK F R L H RTHTG++
Sbjct: 133 PYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTGKK 188
>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
pdb|1A1J|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
pdb|1A1K|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
Length = 90
Score = 79.3 bits (194), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/82 (47%), Positives = 53/82 (64%), Gaps = 3/82 (3%)
Query: 32 YAC--KYCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPF 89
YAC + C + F RSA+LTRH+R HTG++P++C+ C R+FS S +L H+R H EKPF
Sbjct: 5 YACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT-HTGEKPF 63
Query: 90 KCPLCDRCFGQQTNLDRHLKKH 111
C +C R F + RH K H
Sbjct: 64 ACDICGRKFARSDERKRHTKIH 85
Score = 79.3 bits (194), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/82 (47%), Positives = 53/82 (64%), Gaps = 3/82 (3%)
Query: 763 YAC--KYCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPF 820
YAC + C + F RSA+LTRH+R HTG++P++C+ C R+FS S +L H+R H EKPF
Sbjct: 5 YACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT-HTGEKPF 63
Query: 821 KCPLCDRCFGQQTNLDRHLKKH 842
C +C R F + RH K H
Sbjct: 64 ACDICGRKFARSDERKRHTKIH 85
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 37/56 (66%), Gaps = 1/56 (1%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEK 87
+ C+ C + F RS +LT H+RTHTGE+P+ C C R F+ S +RH + IH ++K
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTK-IHLRQK 89
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 37/56 (66%), Gaps = 1/56 (1%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEK 818
+ C+ C + F RS +LT H+RTHTGE+P+ C C R F+ S +RH + IH ++K
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTK-IHLRQK 89
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 226 PCENCTKVFSDPSNLQRHIRTHHVGARQHACQECGKTFATSSGLKQHTHIHSSVKPFRCE 285
P E+C + FS ++L RHIR H G + C+ C + F+ S L H H+ KPF C+
Sbjct: 8 PVESCDRRFSRSADLTRHIRIH-TGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACD 66
Query: 286 VCHKAYTQFSNLCRHKRMH 304
+C + + + RH ++H
Sbjct: 67 ICGRKFARSDERKRHTKIH 85
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 39/60 (65%), Gaps = 3/60 (5%)
Query: 57 EQPYKC--KYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKHEAD 114
E+PY C + C+R FS S++L RH+R IH +KPF+C +C R F + +L H++ H +
Sbjct: 2 ERPYACPVESCDRRFSRSADLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 39/60 (65%), Gaps = 3/60 (5%)
Query: 788 EQPYKC--KYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKHEAD 845
E+PY C + C+R FS S++L RH+R IH +KPF+C +C R F + +L H++ H +
Sbjct: 2 ERPYACPVESCDRRFSRSADLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 201 ESCSQTFCWRPHLNFHQAQVHGRK-FPCENCTKVFSDPSNLQRHIRTHHVGARQHACQEC 259
ESC + F L H G+K F C C + FS +L HIRT H G + AC C
Sbjct: 10 ESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT-HTGEKPFACDIC 68
Query: 260 GKTFATSSGLKQHTHIH 276
G+ FA S K+HT IH
Sbjct: 69 GRKFARSDERKRHTKIH 85
>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site
pdb|1JK2|A Chain A, Zif268 D20a Mutant Bound To The Gct Dna Site
Length = 90
Score = 78.6 bits (192), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/82 (47%), Positives = 52/82 (63%), Gaps = 3/82 (3%)
Query: 32 YAC--KYCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPF 89
YAC + C + F RSA LTRH+R HTG++P++C+ C R+FS S +L H+R H EKPF
Sbjct: 5 YACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT-HTGEKPF 63
Query: 90 KCPLCDRCFGQQTNLDRHLKKH 111
C +C R F + RH K H
Sbjct: 64 ACDICGRKFARSDERKRHTKIH 85
Score = 78.6 bits (192), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/82 (47%), Positives = 52/82 (63%), Gaps = 3/82 (3%)
Query: 763 YAC--KYCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPF 820
YAC + C + F RSA LTRH+R HTG++P++C+ C R+FS S +L H+R H EKPF
Sbjct: 5 YACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT-HTGEKPF 63
Query: 821 KCPLCDRCFGQQTNLDRHLKKH 842
C +C R F + RH K H
Sbjct: 64 ACDICGRKFARSDERKRHTKIH 85
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 37/56 (66%), Gaps = 1/56 (1%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEK 87
+ C+ C + F RS +LT H+RTHTGE+P+ C C R F+ S +RH + IH ++K
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTK-IHLRQK 89
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 37/56 (66%), Gaps = 1/56 (1%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEK 818
+ C+ C + F RS +LT H+RTHTGE+P+ C C R F+ S +RH + IH ++K
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTK-IHLRQK 89
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 226 PCENCTKVFSDPSNLQRHIRTHHVGARQHACQECGKTFATSSGLKQHTHIHSSVKPFRCE 285
P E+C + FS + L RHIR H G + C+ C + F+ S L H H+ KPF C+
Sbjct: 8 PVESCDRRFSRSAELTRHIRIH-TGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACD 66
Query: 286 VCHKAYTQFSNLCRHKRMH 304
+C + + + RH ++H
Sbjct: 67 ICGRKFARSDERKRHTKIH 85
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 38/60 (63%), Gaps = 3/60 (5%)
Query: 57 EQPYKC--KYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKHEAD 114
E+PY C + C+R FS S+ L RH+R IH +KPF+C +C R F + +L H++ H +
Sbjct: 2 ERPYACPVESCDRRFSRSAELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 38/60 (63%), Gaps = 3/60 (5%)
Query: 788 EQPYKC--KYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKHEAD 845
E+PY C + C+R FS S+ L RH+R IH +KPF+C +C R F + +L H++ H +
Sbjct: 2 ERPYACPVESCDRRFSRSAELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 201 ESCSQTFCWRPHLNFHQAQVHGRK-FPCENCTKVFSDPSNLQRHIRTHHVGARQHACQEC 259
ESC + F L H G+K F C C + FS +L HIRT H G + AC C
Sbjct: 10 ESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT-HTGEKPFACDIC 68
Query: 260 GKTFATSSGLKQHTHIH 276
G+ FA S K+HT IH
Sbjct: 69 GRKFARSDERKRHTKIH 85
>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type
Zinc-Binding Domain Of The Zinc Finger Protein 64,
Isoforms 1 And 2
Length = 96
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 91
+ C+ CGK F R L H+R HTG +PYKCK C+ + + SS+L +H+R IH+ E+PFKC
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLR-IHSDERPFKC 67
Query: 92 PLCDRCFGQQTNLDRHLKKHEADDG 116
+C + L HL+ H D G
Sbjct: 68 QICPYASRNSSQLTVHLRSHTGDSG 92
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 822
+ C+ CGK F R L H+R HTG +PYKCK C+ + + SS+L +H+R IH+ E+PFKC
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLR-IHSDERPFKC 67
Query: 823 PLCDRCFGQQTNLDRHLKKHEADDG 847
+C + L HL+ H D G
Sbjct: 68 QICPYASRNSSQLTVHLRSHTGDSG 92
Score = 56.2 bits (134), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 227 CENCTKVFSDPSNLQRHIRTHHVGARQHACQECGKTFATSSGLKQHTHIHSSVKPFRCEV 286
CE C K FS L+ H+R H G + + C+ C A SS L +H IHS +PF+C++
Sbjct: 11 CEVCGKCFSRKDKLKTHMRCH-TGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQI 69
Query: 287 CHKAYTQFSNLCRHKRMHAN 306
C A S L H R H
Sbjct: 70 CPYASRNSSQLTVHLRSHTG 89
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 254 HACQECGKTFATSSGLKQHTHIHSSVKPFRCEVCHKAYTQFSNLCRHKRMHANCRMQIKC 313
H C+ CGK F+ LK H H+ VKP++C+ C A S+L +H R+H++ R KC
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDER-PFKC 67
Query: 314 VKCDQSFSTVTSLSKHKR 331
C + + L+ H R
Sbjct: 68 QICPYASRNSSQLTVHLR 85
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 59 PYKCKYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 111
P+KC+ C + FS L+ H+R H KP+KC CD ++L++HL+ H
Sbjct: 8 PHKCEVCGKCFSRKDKLKTHMR-CHTGVKPYKCKTCDYAAADSSSLNKHLRIH 59
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 790 PYKCKYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 842
P+KC+ C + FS L+ H+R H KP+KC CD ++L++HL+ H
Sbjct: 8 PHKCEVCGKCFSRKDKLKTHMR-CHTGVKPYKCKTCDYAAADSSSLNKHLRIH 59
Score = 34.3 bits (77), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 278 SVKPFRCEVCHKAYTQFSNLCRHKRMHANCRMQIKCVKCDQSFSTVTSLSKHKRF 332
S P +CEVC K +++ L H R H + KC CD + + +SL+KH R
Sbjct: 5 SSGPHKCEVCGKCFSRKDKLKTHMRCHTGVK-PYKCKTCDYAAADSSSLNKHLRI 58
>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
pdb|1A1G|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
Length = 90
Score = 76.6 bits (187), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 38/82 (46%), Positives = 52/82 (63%), Gaps = 3/82 (3%)
Query: 32 YAC--KYCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPF 89
YAC + C + F S+NLTRH+R HTG++P++C+ C R+FS S +L H+R H EKPF
Sbjct: 5 YACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT-HTGEKPF 63
Query: 90 KCPLCDRCFGQQTNLDRHLKKH 111
C +C R F + RH K H
Sbjct: 64 ACDICGRKFARSDERKRHTKIH 85
Score = 76.6 bits (187), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 38/82 (46%), Positives = 52/82 (63%), Gaps = 3/82 (3%)
Query: 763 YAC--KYCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPF 820
YAC + C + F S+NLTRH+R HTG++P++C+ C R+FS S +L H+R H EKPF
Sbjct: 5 YACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT-HTGEKPF 63
Query: 821 KCPLCDRCFGQQTNLDRHLKKH 842
C +C R F + RH K H
Sbjct: 64 ACDICGRKFARSDERKRHTKIH 85
Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 226 PCENCTKVFSDPSNLQRHIRTHHVGARQHACQECGKTFATSSGLKQHTHIHSSVKPFRCE 285
P E+C + FSD SNL RHIR H G + C+ C + F+ S L H H+ KPF C+
Sbjct: 8 PVESCDRRFSDSSNLTRHIRIH-TGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACD 66
Query: 286 VCHKAYTQFSNLCRHKRMH 304
+C + + + RH ++H
Sbjct: 67 ICGRKFARSDERKRHTKIH 85
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 37/56 (66%), Gaps = 1/56 (1%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEK 87
+ C+ C + F RS +LT H+RTHTGE+P+ C C R F+ S +RH + IH ++K
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTK-IHLRQK 89
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 37/56 (66%), Gaps = 1/56 (1%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEK 818
+ C+ C + F RS +LT H+RTHTGE+P+ C C R F+ S +RH + IH ++K
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTK-IHLRQK 89
Score = 53.5 bits (127), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 39/60 (65%), Gaps = 3/60 (5%)
Query: 57 EQPYKC--KYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKHEAD 114
E+PY C + C+R FS SSNL RH+R IH +KPF+C +C R F + +L H++ H +
Sbjct: 2 ERPYACPVESCDRRFSDSSNLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Score = 53.5 bits (127), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 39/60 (65%), Gaps = 3/60 (5%)
Query: 788 EQPYKC--KYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKHEAD 845
E+PY C + C+R FS SSNL RH+R IH +KPF+C +C R F + +L H++ H +
Sbjct: 2 ERPYACPVESCDRRFSDSSNLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 201 ESCSQTFCWRPHLNFHQAQVHGRK-FPCENCTKVFSDPSNLQRHIRTHHVGARQHACQEC 259
ESC + F +L H G+K F C C + FS +L HIRT H G + AC C
Sbjct: 10 ESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT-HTGEKPFACDIC 68
Query: 260 GKTFATSSGLKQHTHIH 276
G+ FA S K+HT IH
Sbjct: 69 GRKFARSDERKRHTKIH 85
>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex
pdb|1A1L|A Chain A, Zif268 Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 75.9 bits (185), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 38/82 (46%), Positives = 51/82 (62%), Gaps = 3/82 (3%)
Query: 32 YAC--KYCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPF 89
YAC + C + F RS LTRH+R HTG++P++C+ C R+FS S +L H+R H EKPF
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT-HTGEKPF 63
Query: 90 KCPLCDRCFGQQTNLDRHLKKH 111
C +C R F + RH K H
Sbjct: 64 ACDICGRKFARSDERKRHTKIH 85
Score = 75.9 bits (185), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 38/82 (46%), Positives = 51/82 (62%), Gaps = 3/82 (3%)
Query: 763 YAC--KYCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPF 820
YAC + C + F RS LTRH+R HTG++P++C+ C R+FS S +L H+R H EKPF
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT-HTGEKPF 63
Query: 821 KCPLCDRCFGQQTNLDRHLKKH 842
C +C R F + RH K H
Sbjct: 64 ACDICGRKFARSDERKRHTKIH 85
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 37/56 (66%), Gaps = 1/56 (1%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEK 87
+ C+ C + F RS +LT H+RTHTGE+P+ C C R F+ S +RH + IH ++K
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTK-IHLRQK 89
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 37/56 (66%), Gaps = 1/56 (1%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEK 818
+ C+ C + F RS +LT H+RTHTGE+P+ C C R F+ S +RH + IH ++K
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTK-IHLRQK 89
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 226 PCENCTKVFSDPSNLQRHIRTHHVGARQHACQECGKTFATSSGLKQHTHIHSSVKPFRCE 285
P E+C + FS L RHIR H G + C+ C + F+ S L H H+ KPF C+
Sbjct: 8 PVESCDRRFSRSDELTRHIRIH-TGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACD 66
Query: 286 VCHKAYTQFSNLCRHKRMH 304
+C + + + RH ++H
Sbjct: 67 ICGRKFARSDERKRHTKIH 85
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 37/60 (61%), Gaps = 3/60 (5%)
Query: 57 EQPYKC--KYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKHEAD 114
E+PY C + C+R FS S L RH+R IH +KPF+C +C R F + +L H++ H +
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 37/60 (61%), Gaps = 3/60 (5%)
Query: 788 EQPYKC--KYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKHEAD 845
E+PY C + C+R FS S L RH+R IH +KPF+C +C R F + +L H++ H +
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 201 ESCSQTFCWRPHLNFHQAQVHGRK-FPCENCTKVFSDPSNLQRHIRTHHVGARQHACQEC 259
ESC + F L H G+K F C C + FS +L HIRT H G + AC C
Sbjct: 10 ESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT-HTGEKPFACDIC 68
Query: 260 GKTFATSSGLKQHTHIH 276
G+ FA S K+HT IH
Sbjct: 69 GRKFARSDERKRHTKIH 85
>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2
Domains From Human Kruppel-Like Factor 5
Length = 100
Score = 75.9 bits (185), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 54/83 (65%), Gaps = 5/83 (6%)
Query: 34 CKY--CGKVFPRSANLTRHLRTHTGEQPYKCKY--CERSFSISSNLQRHVRNIHNKEKPF 89
C Y C KV+ +S++L HLRTHTGE+PYKC + C+ F+ S L RH R H KPF
Sbjct: 18 CDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRK-HTGAKPF 76
Query: 90 KCPLCDRCFGQQTNLDRHLKKHE 112
+C +C+R F + +L H+K+H+
Sbjct: 77 QCGVCNRSFSRSDHLALHMKRHQ 99
Score = 75.9 bits (185), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 54/83 (65%), Gaps = 5/83 (6%)
Query: 765 CKY--CGKVFPRSANLTRHLRTHTGEQPYKCKY--CERSFSISSNLQRHVRNIHNKEKPF 820
C Y C KV+ +S++L HLRTHTGE+PYKC + C+ F+ S L RH R H KPF
Sbjct: 18 CDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRK-HTGAKPF 76
Query: 821 KCPLCDRCFGQQTNLDRHLKKHE 843
+C +C+R F + +L H+K+H+
Sbjct: 77 QCGVCNRSFSRSDHLALHMKRHQ 99
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 55/95 (57%), Gaps = 5/95 (5%)
Query: 214 NFHQAQVHGRKFPCENCTKVFSDPSNLQRHIRTHHVGARQHAC--QECGKTFATSSGLKQ 271
+ + ++H +P CTKV++ S+L+ H+RTH G + + C + C FA S L +
Sbjct: 9 DLEKRRIHYCDYP--GCTKVYTKSSHLKAHLRTH-TGEKPYKCTWEGCDWRFARSDELTR 65
Query: 272 HTHIHSSVKPFRCEVCHKAYTQFSNLCRHKRMHAN 306
H H+ KPF+C VC++++++ +L H + H N
Sbjct: 66 HYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRHQN 100
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 32 YACKY--CGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHN 84
Y C + C F RS LTRH R HTG +P++C C RSFS S +L H++ N
Sbjct: 46 YKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRHQN 100
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 763 YACKY--CGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHN 815
Y C + C F RS LTRH R HTG +P++C C RSFS S +L H++ N
Sbjct: 46 YKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRHQN 100
>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
pdb|1P47|B Chain B, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
Length = 87
Score = 75.9 bits (185), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/82 (46%), Positives = 51/82 (62%), Gaps = 3/82 (3%)
Query: 32 YAC--KYCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPF 89
YAC + C + F RS LTRH+R HTG++P++C+ C R+FS S +L H+R H EKPF
Sbjct: 4 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT-HTGEKPF 62
Query: 90 KCPLCDRCFGQQTNLDRHLKKH 111
C +C R F + RH K H
Sbjct: 63 ACDICGRKFARSDERKRHTKIH 84
Score = 75.9 bits (185), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/82 (46%), Positives = 51/82 (62%), Gaps = 3/82 (3%)
Query: 763 YAC--KYCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPF 820
YAC + C + F RS LTRH+R HTG++P++C+ C R+FS S +L H+R H EKPF
Sbjct: 4 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT-HTGEKPF 62
Query: 821 KCPLCDRCFGQQTNLDRHLKKH 842
C +C R F + RH K H
Sbjct: 63 ACDICGRKFARSDERKRHTKIH 84
Score = 53.1 bits (126), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKE 86
+ C+ C + F RS +LT H+RTHTGE+P+ C C R F+ S +RH + IH ++
Sbjct: 34 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTK-IHLRQ 87
Score = 53.1 bits (126), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKE 817
+ C+ C + F RS +LT H+RTHTGE+P+ C C R F+ S +RH + IH ++
Sbjct: 34 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTK-IHLRQ 87
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 226 PCENCTKVFSDPSNLQRHIRTHHVGARQHACQECGKTFATSSGLKQHTHIHSSVKPFRCE 285
P E+C + FS L RHIR H G + C+ C + F+ S L H H+ KPF C+
Sbjct: 7 PVESCDRRFSRSDELTRHIRIH-TGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACD 65
Query: 286 VCHKAYTQFSNLCRHKRMH 304
+C + + + RH ++H
Sbjct: 66 ICGRKFARSDERKRHTKIH 84
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 37/60 (61%), Gaps = 3/60 (5%)
Query: 57 EQPYKC--KYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKHEAD 114
E+PY C + C+R FS S L RH+R IH +KPF+C +C R F + +L H++ H +
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 59
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 37/60 (61%), Gaps = 3/60 (5%)
Query: 788 EQPYKC--KYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKHEAD 845
E+PY C + C+R FS S L RH+R IH +KPF+C +C R F + +L H++ H +
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 59
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 201 ESCSQTFCWRPHLNFHQAQVHGRK-FPCENCTKVFSDPSNLQRHIRTHHVGARQHACQEC 259
ESC + F L H G+K F C C + FS +L HIRT H G + AC C
Sbjct: 9 ESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT-HTGEKPFACDIC 67
Query: 260 GKTFATSSGLKQHTHIH 276
G+ FA S K+HT IH
Sbjct: 68 GRKFARSDERKRHTKIH 84
>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A
Zif268- Dna Complex At 2.1 Angstroms
Length = 87
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/82 (46%), Positives = 51/82 (62%), Gaps = 3/82 (3%)
Query: 32 YAC--KYCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPF 89
YAC + C + F RS LTRH+R HTG++P++C+ C R+FS S +L H+R H EKPF
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT-HTGEKPF 63
Query: 90 KCPLCDRCFGQQTNLDRHLKKH 111
C +C R F + RH K H
Sbjct: 64 ACDICGRKFARSDERKRHTKIH 85
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/82 (46%), Positives = 51/82 (62%), Gaps = 3/82 (3%)
Query: 763 YAC--KYCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPF 820
YAC + C + F RS LTRH+R HTG++P++C+ C R+FS S +L H+R H EKPF
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT-HTGEKPF 63
Query: 821 KCPLCDRCFGQQTNLDRHLKKH 842
C +C R F + RH K H
Sbjct: 64 ACDICGRKFARSDERKRHTKIH 85
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 226 PCENCTKVFSDPSNLQRHIRTHHVGARQHACQECGKTFATSSGLKQHTHIHSSVKPFRCE 285
P E+C + FS L RHIR H G + C+ C + F+ S L H H+ KPF C+
Sbjct: 8 PVESCDRRFSRSDELTRHIRIH-TGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACD 66
Query: 286 VCHKAYTQFSNLCRHKRMH 304
+C + + + RH ++H
Sbjct: 67 ICGRKFARSDERKRHTKIH 85
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 37/60 (61%), Gaps = 3/60 (5%)
Query: 57 EQPYKC--KYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKHEAD 114
E+PY C + C+R FS S L RH+R IH +KPF+C +C R F + +L H++ H +
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 37/60 (61%), Gaps = 3/60 (5%)
Query: 788 EQPYKC--KYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKHEAD 845
E+PY C + C+R FS S L RH+R IH +KPF+C +C R F + +L H++ H +
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 52/82 (63%), Gaps = 3/82 (3%)
Query: 32 YAC--KYCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPF 89
YAC + C + F +S +LTRH+R HTG++P++C+ C R+FS S +L H+R H EKPF
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT-HTGEKPF 63
Query: 90 KCPLCDRCFGQQTNLDRHLKKH 111
C +C R F + RH K H
Sbjct: 64 ACDICGRKFARSDERKRHTKIH 85
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 52/82 (63%), Gaps = 3/82 (3%)
Query: 763 YAC--KYCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPF 820
YAC + C + F +S +LTRH+R HTG++P++C+ C R+FS S +L H+R H EKPF
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT-HTGEKPF 63
Query: 821 KCPLCDRCFGQQTNLDRHLKKH 842
C +C R F + RH K H
Sbjct: 64 ACDICGRKFARSDERKRHTKIH 85
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 37/56 (66%), Gaps = 1/56 (1%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEK 87
+ C+ C + F RS +LT H+RTHTGE+P+ C C R F+ S +RH + IH ++K
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTK-IHLRQK 89
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 37/56 (66%), Gaps = 1/56 (1%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEK 818
+ C+ C + F RS +LT H+RTHTGE+P+ C C R F+ S +RH + IH ++K
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTK-IHLRQK 89
Score = 53.9 bits (128), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 226 PCENCTKVFSDPSNLQRHIRTHHVGARQHACQECGKTFATSSGLKQHTHIHSSVKPFRCE 285
P E+C + FS +L RHIR H G + C+ C + F+ S L H H+ KPF C+
Sbjct: 8 PVESCDRRFSQSGSLTRHIRIH-TGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACD 66
Query: 286 VCHKAYTQFSNLCRHKRMH 304
+C + + + RH ++H
Sbjct: 67 ICGRKFARSDERKRHTKIH 85
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 38/60 (63%), Gaps = 3/60 (5%)
Query: 57 EQPYKC--KYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKHEAD 114
E+PY C + C+R FS S +L RH+R IH +KPF+C +C R F + +L H++ H +
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 38/60 (63%), Gaps = 3/60 (5%)
Query: 788 EQPYKC--KYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKHEAD 845
E+PY C + C+R FS S +L RH+R IH +KPF+C +C R F + +L H++ H +
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 201 ESCSQTFCWRPHLNFHQAQVHGRK-FPCENCTKVFSDPSNLQRHIRTHHVGARQHACQEC 259
ESC + F L H G+K F C C + FS +L HIRT H G + AC C
Sbjct: 10 ESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT-HTGEKPFACDIC 68
Query: 260 GKTFATSSGLKQHTHIH 276
G+ FA S K+HT IH
Sbjct: 69 GRKFARSDERKRHTKIH 85
>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse
Protein Odd-Skipped-Related 2 Splicing Isoform 2
Length = 106
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/80 (47%), Positives = 49/80 (61%), Gaps = 1/80 (1%)
Query: 28 TKDRYACKYCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEK 87
TK + CK+CG+ F +S NL H RTHT E+PY C C ++F +L+ H R IH+KEK
Sbjct: 14 TKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDH-RYIHSKEK 72
Query: 88 PFKCPLCDRCFGQQTNLDRH 107
PFKC C + F Q L H
Sbjct: 73 PFKCQECGKGFCQSRTLAVH 92
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/80 (47%), Positives = 49/80 (61%), Gaps = 1/80 (1%)
Query: 759 TKDRYACKYCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEK 818
TK + CK+CG+ F +S NL H RTHT E+PY C C ++F +L+ H R IH+KEK
Sbjct: 14 TKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDH-RYIHSKEK 72
Query: 819 PFKCPLCDRCFGQQTNLDRH 838
PFKC C + F Q L H
Sbjct: 73 PFKCQECGKGFCQSRTLAVH 92
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 223 RKFPCENCTKVFSDPSNLQRHIRTHHVGARQHACQECGKTFATSSGLKQHTHIHSSVKPF 282
++F C+ C + F+ NL H RTH R + C C K F L+ H +IHS KPF
Sbjct: 16 KEFICKFCGRHFTKSYNLLIHERTH-TDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPF 74
Query: 283 RCEVCHKAYTQFSNLCRHKRMHAN 306
+C+ C K + Q L HK +H
Sbjct: 75 KCQECGKGFCQSRTLAVHKTLHMQ 98
Score = 46.6 bits (109), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 252 RQHACQECGKTFATSSGLKQHTHIHSSVKPFRCEVCHKAYTQFSNLCRHKRMHANCRMQI 311
++ C+ CG+ F S L H H+ +P+ C++CHKA+ + +L H+ +H+
Sbjct: 16 KEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSK-EKPF 74
Query: 312 KCVKCDQSFSTVTSLSKHK 330
KC +C + F +L+ HK
Sbjct: 75 KCQECGKGFCQSRTLAVHK 93
>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
Length = 82
Score = 74.3 bits (181), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 91
+ CK CGK F RS+ L+ HL H+ +PY C+YC + F S++++H IH EKP KC
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHT-FIHTGEKPHKC 60
Query: 92 PLCDRCFGQQTNLDRHLKKHEA 113
+C + F Q +NL H +KH
Sbjct: 61 QVCGKAFSQSSNLITHSRKHTG 82
Score = 74.3 bits (181), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 822
+ CK CGK F RS+ L+ HL H+ +PY C+YC + F S++++H IH EKP KC
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHT-FIHTGEKPHKC 60
Query: 823 PLCDRCFGQQTNLDRHLKKHEA 844
+C + F Q +NL H +KH
Sbjct: 61 QVCGKAFSQSSNLITHSRKHTG 82
Score = 65.9 bits (159), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 225 FPCENCTKVFSDPSNLQRHIRTHHVGARQHACQECGKTFATSSGLKQHTHIHSSVKPFRC 284
F C+ C K F S L H+ H R + CQ CGK F S +K+HT IH+ KP +C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIH-SDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKC 60
Query: 285 EVCHKAYTQFSNLCRHKRMHAN 306
+VC KA++Q SNL H R H
Sbjct: 61 QVCGKAFSQSSNLITHSRKHTG 82
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 256 CQECGKTFATSSGLKQHTHIHSSVKPFRCEVCHKAYTQFSNLCRHKRMHANCRMQIKCVK 315
C+ CGK+F SS L H IHS +P+ C+ C K + Q S++ +H +H + KC
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPH-KCQV 62
Query: 316 CDQSFSTVTSLSKHKR 331
C ++FS ++L H R
Sbjct: 63 CGKAFSQSSNLITHSR 78
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
Query: 198 YRCESCSQTFCWRPHLNFHQAQVHG--RKFPCENCTKVFSDPSNLQRHIRTHHVGARQHA 255
+ C+ C ++F L+ H +H R +PC+ C K F S++++H H G + H
Sbjct: 2 FDCKICGKSFKRSSTLSTHLL-IHSDTRPYPCQYCGKRFHQKSDMKKHTFIH-TGEKPHK 59
Query: 256 CQECGKTFATSSGLKQHTHIHS 277
CQ CGK F+ SS L H+ H+
Sbjct: 60 CQVCGKAFSQSSNLITHSRKHT 81
Score = 37.0 bits (84), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 60 YKCKYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKHEAD 114
+ CK C +SF SS L H+ IH+ +P+ C C + F Q++++ +H H +
Sbjct: 2 FDCKICGKSFKRSSTLSTHLL-IHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGE 55
Score = 37.0 bits (84), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 791 YKCKYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKHEAD 845
+ CK C +SF SS L H+ IH+ +P+ C C + F Q++++ +H H +
Sbjct: 2 FDCKICGKSFKRSSTLSTHLL-IHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGE 55
>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 90
Score = 73.2 bits (178), Expect = 6e-13, Method: Composition-based stats.
Identities = 37/84 (44%), Positives = 51/84 (60%), Gaps = 5/84 (5%)
Query: 32 YACKY--CGKVFPRSANLTRHLRTHTGEQPYKCKY--CERSFSISSNLQRHVRNIHNKEK 87
+ C Y CGK + +S++L HLRTHTGE+PY C + C F+ S L RH R H +
Sbjct: 7 HTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRK-HTGHR 65
Query: 88 PFKCPLCDRCFGQQTNLDRHLKKH 111
PF+C CDR F + +L H+K+H
Sbjct: 66 PFQCQKCDRAFSRSDHLALHMKRH 89
Score = 73.2 bits (178), Expect = 6e-13, Method: Composition-based stats.
Identities = 37/84 (44%), Positives = 51/84 (60%), Gaps = 5/84 (5%)
Query: 763 YACKY--CGKVFPRSANLTRHLRTHTGEQPYKCKY--CERSFSISSNLQRHVRNIHNKEK 818
+ C Y CGK + +S++L HLRTHTGE+PY C + C F+ S L RH R H +
Sbjct: 7 HTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRK-HTGHR 65
Query: 819 PFKCPLCDRCFGQQTNLDRHLKKH 842
PF+C CDR F + +L H+K+H
Sbjct: 66 PFQCQKCDRAFSRSDHLALHMKRH 89
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 25/58 (43%), Positives = 37/58 (63%), Gaps = 2/58 (3%)
Query: 25 SKTTKDRYACKY--CGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVR 80
+ T + Y C + CG F RS LTRH R HTG +P++C+ C+R+FS S +L H++
Sbjct: 30 THTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMK 87
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 25/58 (43%), Positives = 37/58 (63%), Gaps = 2/58 (3%)
Query: 756 SKTTKDRYACKY--CGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVR 811
+ T + Y C + CG F RS LTRH R HTG +P++C+ C+R+FS S +L H++
Sbjct: 30 THTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMK 87
Score = 51.6 bits (122), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/77 (33%), Positives = 44/77 (57%), Gaps = 3/77 (3%)
Query: 230 CTKVFSDPSNLQRHIRTHHVGARQHACQ--ECGKTFATSSGLKQHTHIHSSVKPFRCEVC 287
C K ++ S+L+ H+RTH G + + C CG FA S L +H H+ +PF+C+ C
Sbjct: 14 CGKTYTKSSHLKAHLRTH-TGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKC 72
Query: 288 HKAYTQFSNLCRHKRMH 304
+A+++ +L H + H
Sbjct: 73 DRAFSRSDHLALHMKRH 89
Score = 50.1 bits (118), Expect = 6e-06, Method: Composition-based stats.
Identities = 30/82 (36%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 254 HACQE--CGKTFATSSGLKQHTHIHSSVKPFRCEV--CHKAYTQFSNLCRHKRMHANCRM 309
H C CGKT+ SS LK H H+ KP+ C+ C + + L RH R H R
Sbjct: 7 HTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHR- 65
Query: 310 QIKCVKCDQSFSTVTSLSKHKR 331
+C KCD++FS L+ H +
Sbjct: 66 PFQCQKCDRAFSRSDHLALHMK 87
>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 89
Score = 73.2 bits (178), Expect = 7e-13, Method: Composition-based stats.
Identities = 37/84 (44%), Positives = 51/84 (60%), Gaps = 5/84 (5%)
Query: 32 YACKY--CGKVFPRSANLTRHLRTHTGEQPYKCKY--CERSFSISSNLQRHVRNIHNKEK 87
+ C Y CGK + +S++L HLRTHTGE+PY C + C F+ S L RH R H +
Sbjct: 6 HTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRK-HTGHR 64
Query: 88 PFKCPLCDRCFGQQTNLDRHLKKH 111
PF+C CDR F + +L H+K+H
Sbjct: 65 PFQCQKCDRAFSRSDHLALHMKRH 88
Score = 73.2 bits (178), Expect = 7e-13, Method: Composition-based stats.
Identities = 37/84 (44%), Positives = 51/84 (60%), Gaps = 5/84 (5%)
Query: 763 YACKY--CGKVFPRSANLTRHLRTHTGEQPYKCKY--CERSFSISSNLQRHVRNIHNKEK 818
+ C Y CGK + +S++L HLRTHTGE+PY C + C F+ S L RH R H +
Sbjct: 6 HTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRK-HTGHR 64
Query: 819 PFKCPLCDRCFGQQTNLDRHLKKH 842
PF+C CDR F + +L H+K+H
Sbjct: 65 PFQCQKCDRAFSRSDHLALHMKRH 88
Score = 52.0 bits (123), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/58 (43%), Positives = 37/58 (63%), Gaps = 2/58 (3%)
Query: 25 SKTTKDRYACKY--CGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVR 80
+ T + Y C + CG F RS LTRH R HTG +P++C+ C+R+FS S +L H++
Sbjct: 29 THTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMK 86
Score = 52.0 bits (123), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/58 (43%), Positives = 37/58 (63%), Gaps = 2/58 (3%)
Query: 756 SKTTKDRYACKY--CGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVR 811
+ T + Y C + CG F RS LTRH R HTG +P++C+ C+R+FS S +L H++
Sbjct: 29 THTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMK 86
Score = 51.6 bits (122), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/77 (33%), Positives = 44/77 (57%), Gaps = 3/77 (3%)
Query: 230 CTKVFSDPSNLQRHIRTHHVGARQHACQ--ECGKTFATSSGLKQHTHIHSSVKPFRCEVC 287
C K ++ S+L+ H+RTH G + + C CG FA S L +H H+ +PF+C+ C
Sbjct: 13 CGKTYTKSSHLKAHLRTH-TGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKC 71
Query: 288 HKAYTQFSNLCRHKRMH 304
+A+++ +L H + H
Sbjct: 72 DRAFSRSDHLALHMKRH 88
Score = 50.1 bits (118), Expect = 7e-06, Method: Composition-based stats.
Identities = 30/82 (36%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 254 HACQE--CGKTFATSSGLKQHTHIHSSVKPFRCEV--CHKAYTQFSNLCRHKRMHANCRM 309
H C CGKT+ SS LK H H+ KP+ C+ C + + L RH R H R
Sbjct: 6 HTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHR- 64
Query: 310 QIKCVKCDQSFSTVTSLSKHKR 331
+C KCD++FS L+ H +
Sbjct: 65 PFQCQKCDRAFSRSDHLALHMK 86
>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound
To The Adeno-Associated Virus P5 Initiator Element
Length = 124
Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 51/84 (60%), Gaps = 5/84 (5%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQPYKCKY--CERSFSISSNLQRHVRNIHNKEKPF 89
+ C CGK F S+ L RH HTGE+P++C + C + FS+ NL+ HVR IH ++P+
Sbjct: 35 HVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVR-IHTGDRPY 93
Query: 90 KCPL--CDRCFGQQTNLDRHLKKH 111
CP C++ F Q TNL H+ H
Sbjct: 94 VCPFDGCNKKFAQSTNLKSHILTH 117
Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 51/84 (60%), Gaps = 5/84 (5%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQPYKCKY--CERSFSISSNLQRHVRNIHNKEKPF 820
+ C CGK F S+ L RH HTGE+P++C + C + FS+ NL+ HVR IH ++P+
Sbjct: 35 HVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVR-IHTGDRPY 93
Query: 821 KCPL--CDRCFGQQTNLDRHLKKH 842
CP C++ F Q TNL H+ H
Sbjct: 94 VCPFDGCNKKFAQSTNLKSHILTH 117
Score = 69.3 bits (168), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 62/108 (57%), Gaps = 7/108 (6%)
Query: 226 PCENCTKVFSDPSNLQRHIRTHHVGARQHACQECGKTFATSSGLKQHTHIHSSVKPFRC- 284
P + CTK+F D S +++H+ TH G R H C ECGK F SS LK+H +H+ KPF+C
Sbjct: 9 PHKGCTKMFRDNSAMRKHLHTH--GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCT 66
Query: 285 -EVCHKAYTQFSNLCRHKRMHANCRMQIKC--VKCDQSFSTVTSLSKH 329
E C K ++ NL H R+H R + C C++ F+ T+L H
Sbjct: 67 FEGCGKRFSLDFNLRTHVRIHTGDRPYV-CPFDGCNKKFAQSTNLKSH 113
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 55/113 (48%), Gaps = 13/113 (11%)
Query: 201 ESCSQTF----CWRPHLNFHQAQVHGRKFPCENCTKVFSDPSNLQRHIRTHHVGARQHAC 256
+ C++ F R HL+ H +VH C C K F + S L+RH H G + C
Sbjct: 11 KGCTKMFRDNSAMRKHLHTHGPRVH----VCAECGKAFVESSKLKRHQLV-HTGEKPFQC 65
Query: 257 --QECGKTFATSSGLKQHTHIHSSVKPFRC--EVCHKAYTQFSNLCRHKRMHA 305
+ CGK F+ L+ H IH+ +P+ C + C+K + Q +NL H HA
Sbjct: 66 TFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHA 118
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 43/95 (45%), Gaps = 6/95 (6%)
Query: 191 HRYPPDQYRCESCSQTFCWRPHLNFHQAQVHGRK-FPC--ENCTKVFSDPSNLQRHIRTH 247
H + P + C C + F L HQ G K F C E C K FS NL+ H+R H
Sbjct: 28 HTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIH 87
Query: 248 HVGARQHAC--QECGKTFATSSGLKQHTHIHSSVK 280
G R + C C K FA S+ LK H H+ K
Sbjct: 88 -TGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAK 121
>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
pdb|1G2D|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
Length = 90
Score = 71.2 bits (173), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 49/82 (59%), Gaps = 3/82 (3%)
Query: 32 YAC--KYCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPF 89
YAC + C + F + NL H+R HTG++P++C+ C R+FS + L +H+R H EKPF
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRT-HTGEKPF 63
Query: 90 KCPLCDRCFGQQTNLDRHLKKH 111
C +C R F DRH K H
Sbjct: 64 ACDICGRKFATLHTRDRHTKIH 85
Score = 71.2 bits (173), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 49/82 (59%), Gaps = 3/82 (3%)
Query: 763 YAC--KYCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPF 820
YAC + C + F + NL H+R HTG++P++C+ C R+FS + L +H+R H EKPF
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRT-HTGEKPF 63
Query: 821 KCPLCDRCFGQQTNLDRHLKKH 842
C +C R F DRH K H
Sbjct: 64 ACDICGRKFATLHTRDRHTKIH 85
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 226 PCENCTKVFSDPSNLQRHIRTHHVGARQHACQECGKTFATSSGLKQHTHIHSSVKPFRCE 285
P E+C + FS +NL HIR H G + C+ C + F+ +GL QH H+ KPF C+
Sbjct: 8 PVESCDRRFSQKTNLDTHIRIH-TGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACD 66
Query: 286 VCHKAYTQFSNLCRHKRMH 304
+C + + RH ++H
Sbjct: 67 ICGRKFATLHTRDRHTKIH 85
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 39/60 (65%), Gaps = 3/60 (5%)
Query: 57 EQPYKC--KYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKHEAD 114
E+PY C + C+R FS +NL H+R IH +KPF+C +C R F Q T L++H++ H +
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIR-IHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGE 60
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 39/60 (65%), Gaps = 3/60 (5%)
Query: 788 EQPYKC--KYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKHEAD 845
E+PY C + C+R FS +NL H+R IH +KPF+C +C R F Q T L++H++ H +
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIR-IHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGE 60
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
Query: 201 ESCSQTFCWRPHLNFHQAQVHGRK-FPCENCTKVFSDPSNLQRHIRTHHVGARQHACQEC 259
ESC + F + +L+ H G+K F C C + FS + L +HIRT H G + AC C
Sbjct: 10 ESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRT-HTGEKPFACDIC 68
Query: 260 GKTFATSSGLKQHTHIH 276
G+ FAT +HT IH
Sbjct: 69 GRKFATLHTRDRHTKIH 85
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEK 87
+ C+ C + F + L +H+RTHTGE+P+ C C R F+ RH + IH ++K
Sbjct: 35 FQCRICMRNFSQHTGLNQHIRTHTGEKPFACDICGRKFATLHTRDRHTK-IHLRQK 89
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEK 818
+ C+ C + F + L +H+RTHTGE+P+ C C R F+ RH + IH ++K
Sbjct: 35 FQCRICMRNFSQHTGLNQHIRTHTGEKPFACDICGRKFATLHTRDRHTK-IHLRQK 89
>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
pdb|1G2F|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
Length = 90
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Query: 32 YAC--KYCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPF 89
YAC + C + F + NL H+R HTG++P++C+ C R+FS ++L H+R H EKPF
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRT-HTGEKPF 63
Query: 90 KCPLCDRCFGQQTNLDRHLKKH 111
C +C R F RH K H
Sbjct: 64 ACDICGRKFATLHTRTRHTKIH 85
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Query: 763 YAC--KYCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPF 820
YAC + C + F + NL H+R HTG++P++C+ C R+FS ++L H+R H EKPF
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRT-HTGEKPF 63
Query: 821 KCPLCDRCFGQQTNLDRHLKKH 842
C +C R F RH K H
Sbjct: 64 ACDICGRKFATLHTRTRHTKIH 85
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 226 PCENCTKVFSDPSNLQRHIRTHHVGARQHACQECGKTFATSSGLKQHTHIHSSVKPFRCE 285
P E+C + FS +NL HIR H G + C+ C + F+ + L H H+ KPF C+
Sbjct: 8 PVESCDRRFSQKTNLDTHIRIH-TGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFACD 66
Query: 286 VCHKAYTQFSNLCRHKRMH 304
+C + + RH ++H
Sbjct: 67 ICGRKFATLHTRTRHTKIH 85
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 39/60 (65%), Gaps = 3/60 (5%)
Query: 57 EQPYKC--KYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKHEAD 114
E+PY C + C+R FS +NL H+R IH +KPF+C +C R F QQ +L+ H++ H +
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIR-IHTGQKPFQCRICMRNFSQQASLNAHIRTHTGE 60
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 39/60 (65%), Gaps = 3/60 (5%)
Query: 788 EQPYKC--KYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKHEAD 845
E+PY C + C+R FS +NL H+R IH +KPF+C +C R F QQ +L+ H++ H +
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIR-IHTGQKPFQCRICMRNFSQQASLNAHIRTHTGE 60
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEK 87
+ C+ C + F + A+L H+RTHTGE+P+ C C R F+ RH + IH ++K
Sbjct: 35 FQCRICMRNFSQQASLNAHIRTHTGEKPFACDICGRKFATLHTRTRHTK-IHLRQK 89
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEK 818
+ C+ C + F + A+L H+RTHTGE+P+ C C R F+ RH + IH ++K
Sbjct: 35 FQCRICMRNFSQQASLNAHIRTHTGEKPFACDICGRKFATLHTRTRHTK-IHLRQK 89
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
Query: 201 ESCSQTFCWRPHLNFHQAQVHGRK-FPCENCTKVFSDPSNLQRHIRTHHVGARQHACQEC 259
ESC + F + +L+ H G+K F C C + FS ++L HIRT H G + AC C
Sbjct: 10 ESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRT-HTGEKPFACDIC 68
Query: 260 GKTFATSSGLKQHTHIH 276
G+ FAT +HT IH
Sbjct: 69 GRKFATLHTRTRHTKIH 85
>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2JPA|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2PRT|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
Length = 119
Score = 63.2 bits (152), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 47/84 (55%), Gaps = 5/84 (5%)
Query: 32 YACKY--CGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPF 89
Y C + C + F RS L RH R HTG +P++CK C+R FS S +L+ H R H EKPF
Sbjct: 37 YQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTR-THTGEKPF 95
Query: 90 KC--PLCDRCFGQQTNLDRHLKKH 111
C P C + F + L RH H
Sbjct: 96 SCRWPSCQKKFARSDELVRHHNMH 119
Score = 63.2 bits (152), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 47/84 (55%), Gaps = 5/84 (5%)
Query: 763 YACKY--CGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPF 820
Y C + C + F RS L RH R HTG +P++CK C+R FS S +L+ H R H EKPF
Sbjct: 37 YQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTR-THTGEKPF 95
Query: 821 KC--PLCDRCFGQQTNLDRHLKKH 842
C P C + F + L RH H
Sbjct: 96 SCRWPSCQKKFARSDELVRHHNMH 119
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 49/87 (56%), Gaps = 5/87 (5%)
Query: 32 YACKY--CGKVFPRSANLTRHLRTHTGEQPYKCKY--CERSFSISSNLQRHVRNIHNKEK 87
+ C Y C K + + ++L H R HTGE+PY+C + CER FS S L+RH R H K
Sbjct: 7 FMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRR-HTGVK 65
Query: 88 PFKCPLCDRCFGQQTNLDRHLKKHEAD 114
PF+C C R F + +L H + H +
Sbjct: 66 PFQCKTCQRKFSRSDHLKTHTRTHTGE 92
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 49/87 (56%), Gaps = 5/87 (5%)
Query: 763 YACKY--CGKVFPRSANLTRHLRTHTGEQPYKCKY--CERSFSISSNLQRHVRNIHNKEK 818
+ C Y C K + + ++L H R HTGE+PY+C + CER FS S L+RH R H K
Sbjct: 7 FMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRR-HTGVK 65
Query: 819 PFKCPLCDRCFGQQTNLDRHLKKHEAD 845
PF+C C R F + +L H + H +
Sbjct: 66 PFQCKTCQRKFSRSDHLKTHTRTHTGE 92
Score = 52.8 bits (125), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 48/98 (48%), Gaps = 6/98 (6%)
Query: 212 HLNFHQAQVHGRK-FPCE--NCTKVFSDPSNLQRHIRTHHVGARQHACQECGKTFATSSG 268
HL H + G K + C+ +C + FS L+RH R H G + C+ C + F+ S
Sbjct: 23 HLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRH-TGVKPFQCKTCQRKFSRSDH 81
Query: 269 LKQHTHIHSSVKPFRCEV--CHKAYTQFSNLCRHKRMH 304
LK HT H+ KPF C C K + + L RH MH
Sbjct: 82 LKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 54/108 (50%), Gaps = 12/108 (11%)
Query: 229 NCTKVFSDPSNLQRHIRTHHVGARQHAC--QECGKTFATSSGLKQHTHIHSSVKPFRCEV 286
C K + S+LQ H R H G + + C ++C + F+ S LK+H H+ VKPF+C+
Sbjct: 13 GCNKRYFKLSHLQMHSRKH-TGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKT 71
Query: 287 CHKAYTQFSNLCRHKRMHA-----NCRMQIKCVKCDQSFSTVTSLSKH 329
C + +++ +L H R H +CR C + F+ L +H
Sbjct: 72 CQRKFSRSDHLKTHTRTHTGEKPFSCRW----PSCQKKFARSDELVRH 115
>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The
Human Zinc Finger Protein Zic 3
Length = 155
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 45/81 (55%), Gaps = 5/81 (6%)
Query: 38 GKVFPRSANLTRHLRTHTGEQPYKCKY--CERSFSISSNLQRHVRNIHNKEKPFKCPL-- 93
GK F L H+R HTGE+P+ C + C + F+ S NL+ H R H EKPFKC
Sbjct: 69 GKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRT-HTGEKPFKCEFEG 127
Query: 94 CDRCFGQQTNLDRHLKKHEAD 114
CDR F ++ +H+ H +D
Sbjct: 128 CDRRFANSSDRKKHMHVHTSD 148
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 45/81 (55%), Gaps = 5/81 (6%)
Query: 769 GKVFPRSANLTRHLRTHTGEQPYKCKY--CERSFSISSNLQRHVRNIHNKEKPFKCPL-- 824
GK F L H+R HTGE+P+ C + C + F+ S NL+ H R H EKPFKC
Sbjct: 69 GKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRT-HTGEKPFKCEFEG 127
Query: 825 CDRCFGQQTNLDRHLKKHEAD 845
CDR F ++ +H+ H +D
Sbjct: 128 CDRRFANSSDRKKHMHVHTSD 148
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 56/97 (57%), Gaps = 9/97 (9%)
Query: 726 HLLRSQISPYANKPFQEILTSQNNAVNGSSSKTTKDRYACKY--CGKVFPRSANLTRHLR 783
H+ + P K F+ ++ VN T + + C + CGK+F RS NL H R
Sbjct: 58 HVCYWEECPREGKSFK----AKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKR 113
Query: 784 THTGEQPYKCKY--CERSFSISSNLQRHVRNIHNKEK 818
THTGE+P+KC++ C+R F+ SS+ ++H+ ++H +K
Sbjct: 114 THTGEKPFKCEFEGCDRRFANSSDRKKHM-HVHTSDK 149
Score = 56.2 bits (134), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 40/53 (75%), Gaps = 3/53 (5%)
Query: 37 CGKVFPRSANLTRHLRTHTGEQPYKCKY--CERSFSISSNLQRHVRNIHNKEK 87
CGK+F RS NL H RTHTGE+P+KC++ C+R F+ SS+ ++H+ ++H +K
Sbjct: 98 CGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHM-HVHTSDK 149
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 51/116 (43%), Gaps = 13/116 (11%)
Query: 226 PCENCTKVFSDPSNLQRHIRTHHVGA---RQHAC--QEC---GKTFATSSGLKQHTHIHS 277
P ++C + FS L H+ HVG H C +EC GK+F L H +H+
Sbjct: 27 PKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHT 86
Query: 278 SVKPFRCEV--CHKAYTQFSNLCRHKRMHANCRMQIKC--VKCDQSFSTVTSLSKH 329
KPF C C K + + NL HKR H KC CD+ F+ + KH
Sbjct: 87 GEKPFPCPFPGCGKIFARSENLKIHKRTHTG-EKPFKCEFEGCDRRFANSSDRKKH 141
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 39/73 (53%), Gaps = 8/73 (10%)
Query: 212 HLNFHQAQVHGRKFPCE--NCTKVFSDPSNLQRHIRTHHVGARQHACQ--ECGKTFATSS 267
H+ H + + FPC C K+F+ NL+ H RTH G + C+ C + FA SS
Sbjct: 81 HIRVHTGE---KPFPCPFPGCGKIFARSENLKIHKRTH-TGEKPFKCEFEGCDRRFANSS 136
Query: 268 GLKQHTHIHSSVK 280
K+H H+H+S K
Sbjct: 137 DRKKHMHVHTSDK 149
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 37/79 (46%), Gaps = 5/79 (6%)
Query: 232 KVFSDPSNLQRHIRTHHVGARQHACQ--ECGKTFATSSGLKQHTHIHSSVKPFRCEV--C 287
K F L HIR H G + C CGK FA S LK H H+ KPF+CE C
Sbjct: 70 KSFKAKYKLVNHIRVH-TGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGC 128
Query: 288 HKAYTQFSNLCRHKRMHAN 306
+ + S+ +H +H +
Sbjct: 129 DRRFANSSDRKKHMHVHTS 147
>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain
Of Human Zinc Finger Protein 24
Length = 72
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIH 83
Y C CGK F RS+ L +H R HTGE+PYKC C ++FS +S L H R IH
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQR-IH 65
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIH 814
Y C CGK F RS+ L +H R HTGE+PYKC C ++FS +S L H R IH
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQR-IH 65
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 35/53 (66%)
Query: 254 HACQECGKTFATSSGLKQHTHIHSSVKPFRCEVCHKAYTQFSNLCRHKRMHAN 306
+ C ECGK F+ SS L QH +H+ KP++C C KA++Q S L H+R+H +
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTS 67
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 57 EQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKHEADDG 116
E+PY C C ++FS SS L +H R +H EKP+KC C + F Q + L H + H +
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQR-VHTGEKPYKCLECGKAFSQNSGLINHQRIHTSGPS 70
Query: 117 SG 118
SG
Sbjct: 71 SG 72
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 788 EQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKHEADDG 847
E+PY C C ++FS SS L +H R +H EKP+KC C + F Q + L H + H +
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQR-VHTGEKPYKCLECGKAFSQNSGLINHQRIHTSGPS 70
Query: 848 SG 849
SG
Sbjct: 71 SG 72
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 225 FPCENCTKVFSDPSNLQRHIRTHHVGARQHACQECGKTFATSSGLKQHTHIHSS 278
+ C C K FS S L +H R H G + + C ECGK F+ +SGL H IH+S
Sbjct: 15 YGCVECGKAFSRSSILVQHQRV-HTGEKPYKCLECGKAFSQNSGLINHQRIHTS 67
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 280 KPFRCEVCHKAYTQFSNLCRHKRMHANCRMQIKCVKCDQSFSTVTSLSKHKRF 332
KP+ C C KA+++ S L +H+R+H KC++C ++FS + L H+R
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQRVHTG-EKPYKCLECGKAFSQNSGLINHQRI 64
Score = 30.0 bits (66), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
Query: 198 YRCESCSQTFCWRPHLNFHQAQVHGRK-FPCENCTKVFSDPSNLQRHIRTHHVG 250
Y C C + F L HQ G K + C C K FS S L H R H G
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSG 68
>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2 Domains
Of Human Zinc Finger Protein 297b
Length = 110
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 54/112 (48%), Gaps = 6/112 (5%)
Query: 22 GSSSKTTKDRYACKYCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRN 81
GSS + Y C+ CGK F + RH+ H G +PY C C + F + +L H++
Sbjct: 1 GSSGSSGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMK- 58
Query: 82 IHNKEKPFKCPLCDRCFGQQTNLDRHL----KKHEADDGSGLVSMADSPESS 129
IH KP++C +C + F + + RH+ K +EA + A P S
Sbjct: 59 IHTGIKPYECNICAKRFMWRDSFHRHVTSCTKSYEAAKAEQNTTEASGPSSG 110
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 54/112 (48%), Gaps = 6/112 (5%)
Query: 753 GSSSKTTKDRYACKYCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRN 812
GSS + Y C+ CGK F + RH+ H G +PY C C + F + +L H++
Sbjct: 1 GSSGSSGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMK- 58
Query: 813 IHNKEKPFKCPLCDRCFGQQTNLDRHL----KKHEADDGSGLVSMADSPESS 860
IH KP++C +C + F + + RH+ K +EA + A P S
Sbjct: 59 IHTGIKPYECNICAKRFMWRDSFHRHVTSCTKSYEAAKAEQNTTEASGPSSG 110
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 225 FPCENCTKVFSDPSNLQRHIRTHHVGARQHACQECGKTFATSSGLKQHTHIHSSVKPFRC 284
+PC+ C K F+ S RH+ + H+G R + C CGK F L H IH+ +KP+ C
Sbjct: 11 YPCQ-CGKSFTHKSQRDRHM-SMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYEC 68
Query: 285 EVCHKAYTQFSNLCRH 300
+C K + + RH
Sbjct: 69 NICAKRFMWRDSFHRH 84
>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2
Domain Of Zinc Finger Protein 435
Length = 77
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Query: 29 KDRYACKYCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 88
+ RY C CGK F S++L++H RTHTGE+PYKC C ++F S+L H R +H P
Sbjct: 16 RRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHR-VHTGSGP 74
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Query: 760 KDRYACKYCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 819
+ RY C CGK F S++L++H RTHTGE+PYKC C ++F S+L H R +H P
Sbjct: 16 RRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHR-VHTGSGP 74
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 36/55 (65%)
Query: 252 RQHACQECGKTFATSSGLKQHTHIHSSVKPFRCEVCHKAYTQFSNLCRHKRMHAN 306
R++ C ECGK+F+ SS L +H H+ KP++C+ C KA+ Q S+L H R+H
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTG 71
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 223 RKFPCENCTKVFSDPSNLQRHIRTHHVGARQHACQECGKTFATSSGLKQHTHIHSSVKP 281
R++ C+ C K FS S+L +H RTH G + + C ECGK F S L H +H+ P
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRRTH-TGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGP 74
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 35/59 (59%), Gaps = 4/59 (6%)
Query: 60 YKCKYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKHEADDGSG 118
YKC C +SFS SS+L +H R H EKP+KC C + F Q+++L H H GSG
Sbjct: 19 YKCDECGKSFSHSSDLSKH-RRTHTGEKPYKCDECGKAFIQRSHLIGH---HRVHTGSG 73
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 35/59 (59%), Gaps = 4/59 (6%)
Query: 791 YKCKYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKHEADDGSG 849
YKC C +SFS SS+L +H R H EKP+KC C + F Q+++L H H GSG
Sbjct: 19 YKCDECGKSFSHSSDLSKH-RRTHTGEKPYKCDECGKAFIQRSHLIGH---HRVHTGSG 73
>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX
Length = 155
Score = 56.6 bits (135), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 48/77 (62%), Gaps = 4/77 (5%)
Query: 37 CGKVFPRSANLTRHLRTHTGEQPYKCKY--CERSFSISSNLQRHVRNIHNKEKPFKCPL- 93
C K + R NL HLR+HTGE+PY C++ C ++FS +S+ +H H+ EKP+ C L
Sbjct: 75 CRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLP 134
Query: 94 -CDRCFGQQTNLDRHLK 109
C + + ++L +H+K
Sbjct: 135 GCTKRYTDPSSLRKHVK 151
Score = 56.6 bits (135), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 48/77 (62%), Gaps = 4/77 (5%)
Query: 768 CGKVFPRSANLTRHLRTHTGEQPYKCKY--CERSFSISSNLQRHVRNIHNKEKPFKCPL- 824
C K + R NL HLR+HTGE+PY C++ C ++FS +S+ +H H+ EKP+ C L
Sbjct: 75 CRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLP 134
Query: 825 -CDRCFGQQTNLDRHLK 840
C + + ++L +H+K
Sbjct: 135 GCTKRYTDPSSLRKHVK 151
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 48/97 (49%), Gaps = 10/97 (10%)
Query: 20 VNGSSSKTTKDRYACKYCG-----KVFPRSANLTRHLRTHTGEQPYKCKY--CERSFSIS 72
+N + + C + G + F L H+R HTGE+P+KC + C +S+S
Sbjct: 23 INSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRL 82
Query: 73 SNLQRHVRNIHNKEKPFKCPL--CDRCFGQQTNLDRH 107
NL+ H+R+ H EKP+ C C + F ++ +H
Sbjct: 83 ENLKTHLRS-HTGEKPYMCEHEGCSKAFSNASDRAKH 118
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 48/97 (49%), Gaps = 10/97 (10%)
Query: 751 VNGSSSKTTKDRYACKYCG-----KVFPRSANLTRHLRTHTGEQPYKCKY--CERSFSIS 803
+N + + C + G + F L H+R HTGE+P+KC + C +S+S
Sbjct: 23 INSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRL 82
Query: 804 SNLQRHVRNIHNKEKPFKCPL--CDRCFGQQTNLDRH 838
NL+ H+R+ H EKP+ C C + F ++ +H
Sbjct: 83 ENLKTHLRS-HTGEKPYMCEHEGCSKAFSNASDRAKH 118
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 71/146 (48%), Gaps = 16/146 (10%)
Query: 199 RCESCSQTFCWRPHLNFH--QAQVHG--RKFPCE--NCTKV---FSDPSNLQRHIRTHHV 249
R + CSQ F + L H +HG ++F C C++ F L H+R H
Sbjct: 5 RWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRH-T 63
Query: 250 GARQHAC--QECGKTFATSSGLKQHTHIHSSVKPFRC--EVCHKAYTQFSNLCRHK-RMH 304
G + H C + C K+++ LK H H+ KP+ C E C KA++ S+ +H+ R H
Sbjct: 64 GEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTH 123
Query: 305 ANCRMQI-KCVKCDQSFSTVTSLSKH 329
+N + + K C + ++ +SL KH
Sbjct: 124 SNEKPYVCKLPGCTKRYTDPSSLRKH 149
Score = 38.5 bits (88), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 39/65 (60%), Gaps = 5/65 (7%)
Query: 25 SKTTKDRYACKY--CGKVFPRSANLTRHL-RTHTGEQPYKCKY--CERSFSISSNLQRHV 79
S T + Y C++ C K F +++ +H RTH+ E+PY CK C + ++ S+L++HV
Sbjct: 91 SHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHV 150
Query: 80 RNIHN 84
+ +H
Sbjct: 151 KTVHG 155
Score = 38.5 bits (88), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 39/65 (60%), Gaps = 5/65 (7%)
Query: 756 SKTTKDRYACKY--CGKVFPRSANLTRHL-RTHTGEQPYKCKY--CERSFSISSNLQRHV 810
S T + Y C++ C K F +++ +H RTH+ E+PY CK C + ++ S+L++HV
Sbjct: 91 SHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHV 150
Query: 811 RNIHN 815
+ +H
Sbjct: 151 KTVHG 155
Score = 29.6 bits (65), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 198 YRCE--SCSQTFCWRPHLNFHQAQVHGRKFP--CE--NCTKVFSDPSNLQRHIRTHH 248
Y CE CS+ F HQ + H + P C+ CTK ++DPS+L++H++T H
Sbjct: 98 YMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVH 154
>pdb|1F2I|G Chain G, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|H Chain H, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|I Chain I, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|J Chain J, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|K Chain K, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|L Chain L, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
Length = 73
Score = 56.2 bits (134), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 41/67 (61%), Gaps = 4/67 (5%)
Query: 16 QNNAVNGSSSKTTKDRYAC--KYCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISS 73
NN +N K YAC + C + F RS LTRH+R HTG++P++C+ C R+FS S
Sbjct: 6 MNNLLNYVVPKMRP--YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSD 63
Query: 74 NLQRHVR 80
+L H+R
Sbjct: 64 HLTTHIR 70
Score = 56.2 bits (134), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 41/67 (61%), Gaps = 4/67 (5%)
Query: 747 QNNAVNGSSSKTTKDRYAC--KYCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISS 804
NN +N K YAC + C + F RS LTRH+R HTG++P++C+ C R+FS S
Sbjct: 6 MNNLLNYVVPKMRP--YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSD 63
Query: 805 NLQRHVR 811
+L H+R
Sbjct: 64 HLTTHIR 70
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 35/56 (62%), Gaps = 3/56 (5%)
Query: 58 QPYKC--KYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 111
+PY C + C+R FS S L RH+R IH +KPF+C +C R F + +L H++ H
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 35/56 (62%), Gaps = 3/56 (5%)
Query: 789 QPYKC--KYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 842
+PY C + C+R FS S L RH+R IH +KPF+C +C R F + +L H++ H
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 251 ARQHAC--QECGKTFATSSGLKQHTHIHSSVKPFRCEVCHKAYTQFSNLCRHKRMHA 305
R +AC + C + F+ S L +H IH+ KPF+C +C + +++ +L H R H
Sbjct: 17 MRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 37.4 bits (85), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 213 LNFHQAQVHGRKFPCENCTKVFSDPSNLQRHIRTHHVGARQHACQECGKTFATSSGLKQH 272
LN+ ++ P E+C + FS L RHIR H G + C+ C + F+ S L H
Sbjct: 10 LNYVVPKMRPYACPVESCDRRFSRSDELTRHIRI-HTGQKPFQCRICMRNFSRSDHLTTH 68
Query: 273 THIHS 277
H+
Sbjct: 69 IRTHT 73
Score = 30.4 bits (67), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHT 55
+ C+ C + F RS +LT H+RTHT
Sbjct: 50 FQCRICMRNFSRSDHLTTHIRTHT 73
Score = 30.4 bits (67), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHT 786
+ C+ C + F RS +LT H+RTHT
Sbjct: 50 FQCRICMRNFSRSDHLTTHIRTHT 73
>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345 In
Zinc Finger Protein 278
Length = 95
Score = 56.2 bits (134), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 48/88 (54%), Gaps = 3/88 (3%)
Query: 33 ACKYCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKE--KPFK 90
AC+ CGK+F +L RH +H+GE+PY C C F + HVR+ H+ KP+
Sbjct: 9 ACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRS-HDGSVGKPYI 67
Query: 91 CPLCDRCFGQQTNLDRHLKKHEADDGSG 118
C C + F + +L+ H+K+ + SG
Sbjct: 68 CQSCGKGFSRPDHLNGHIKQVHSGPSSG 95
Score = 56.2 bits (134), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 48/88 (54%), Gaps = 3/88 (3%)
Query: 764 ACKYCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKE--KPFK 821
AC+ CGK+F +L RH +H+GE+PY C C F + HVR+ H+ KP+
Sbjct: 9 ACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRS-HDGSVGKPYI 67
Query: 822 CPLCDRCFGQQTNLDRHLKKHEADDGSG 849
C C + F + +L+ H+K+ + SG
Sbjct: 68 CQSCGKGFSRPDHLNGHIKQVHSGPSSG 95
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGE--QPYKCKYCERSFSISSNLQRHVRNIHN 84
Y+C CG F R ++ H+R+H G +PY C+ C + FS +L H++ +H+
Sbjct: 36 YSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVHS 90
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGE--QPYKCKYCERSFSISSNLQRHVRNIHN 815
Y+C CG F R ++ H+R+H G +PY C+ C + FS +L H++ +H+
Sbjct: 36 YSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVHS 90
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 4/83 (4%)
Query: 227 CENCTKVFSDPSNLQRHIRTHHVGARQHACQECGKTFATSSGLKQHTHIH--SSVKPFRC 284
CE C K+F D +L RH + H G + ++C CG F + H H S KP+ C
Sbjct: 10 CEICGKIFRDVYHLNRH-KLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYIC 68
Query: 285 EVCHKAYTQFSNLCRH-KRMHAN 306
+ C K +++ +L H K++H+
Sbjct: 69 QSCGKGFSRPDHLNGHIKQVHSG 91
Score = 37.0 bits (84), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 38/83 (45%), Gaps = 5/83 (6%)
Query: 200 CESCSQTFCWRPHLNFHQAQVHGRK-FPCENCTKVFSDPSNLQRHIRTH--HVGARQHAC 256
CE C + F HLN H+ G K + C C F + H+R+H VG + + C
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVG-KPYIC 68
Query: 257 QECGKTFATSSGLKQHT-HIHSS 278
Q CGK F+ L H +HS
Sbjct: 69 QSCGKGFSRPDHLNGHIKQVHSG 91
Score = 36.2 bits (82), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
Query: 250 GARQHACQECGKTFATSSGLKQHTHIHSSVKPFRCEVCHKAYTQFSNLCRHKRMH-ANCR 308
G+ AC+ CGK F L +H HS KP+ C VC + + + H R H +
Sbjct: 4 GSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVG 63
Query: 309 MQIKCVKCDQSFSTVTSLSKH 329
C C + FS L+ H
Sbjct: 64 KPYICQSCGKGFSRPDHLNGH 84
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
Query: 198 YRCESCSQTFCWRPHLNFHQAQVH----GRKFPCENCTKVFSDPSNLQRHIRTHHVG 250
Y C C F + +++H + H G+ + C++C K FS P +L HI+ H G
Sbjct: 36 YSCPVCGLRFKRKDRMSYH-VRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVHSG 91
>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|3UK3|D Chain D, Crystal Structure Of Znf217 Bound To Dna
pdb|4F2J|C Chain C, Crystal Structure Of Znf217 Bound To Dna, P6522 Crystal
Form
pdb|4IS1|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|4IS1|D Chain D, Crystal Structure Of Znf217 Bound To Dna
Length = 57
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 39/62 (62%), Gaps = 6/62 (9%)
Query: 22 GSSSKTTKDRYACKYCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRN 81
GSSS+ C YCGK F + L HLRTHTGE+PYKC++CE + + ++L+ H+
Sbjct: 1 GSSSR------ECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLER 54
Query: 82 IH 83
H
Sbjct: 55 HH 56
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 39/62 (62%), Gaps = 6/62 (9%)
Query: 753 GSSSKTTKDRYACKYCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRN 812
GSSS+ C YCGK F + L HLRTHTGE+PYKC++CE + + ++L+ H+
Sbjct: 1 GSSSR------ECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLER 54
Query: 813 IH 814
H
Sbjct: 55 HH 56
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 56 GEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 111
G +C YC + F + L H+R H EKP+KC C+ Q+T+L HL++H
Sbjct: 1 GSSSRECSYCGKFFRSNYYLNIHLRT-HTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 787 GEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 842
G +C YC + F + L H+R H EKP+KC C+ Q+T+L HL++H
Sbjct: 1 GSSSRECSYCGKFFRSNYYLNIHLRT-HTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 27/55 (49%)
Query: 250 GARQHACQECGKTFATSSGLKQHTHIHSSVKPFRCEVCHKAYTQFSNLCRHKRMH 304
G+ C CGK F ++ L H H+ KP++CE C A Q ++L H H
Sbjct: 1 GSSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
pdb|1LLM|D Chain D, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
Length = 88
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 31/47 (65%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRH 78
+ C+ C + F RS +LT H+RTHTGE+P+ C C R F+ S +RH
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 50
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 31/47 (65%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRH 809
+ C+ C + F RS +LT H+RTHTGE+P+ C C R F+ S +RH
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 50
Score = 46.6 bits (109), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 58 QPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTNLDRH 107
+P++C+ C R+FS S +L H+R H EKPF C +C R F + RH
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRT-HTGEKPFACDICGRKFARSDERKRH 50
Score = 46.6 bits (109), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 789 QPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTNLDRH 838
+P++C+ C R+FS S +L H+R H EKPF C +C R F + RH
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRT-HTGEKPFACDICGRKFARSDERKRH 50
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 225 FPCENCTKVFSDPSNLQRHIRTHHVGARQHACQECGKTFATSSGLKQHTHI 275
F C C + FS +L HIRTH G + AC CG+ FA S K+H I
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTH-TGEKPFACDICGRKFARSDERKRHRDI 53
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 24/46 (52%)
Query: 256 CQECGKTFATSSGLKQHTHIHSSVKPFRCEVCHKAYTQFSNLCRHK 301
C+ C + F+ S L H H+ KPF C++C + + + RH+
Sbjct: 6 CRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHR 51
>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae,
Nmr, 25 Structures
Length = 60
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 32/53 (60%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHN 84
+ C+ C + F R +L RH R+HT E+PY C C R+F+ L RH + IH+
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHS 55
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 32/53 (60%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHN 815
+ C+ C + F R +L RH R+HT E+PY C C R+F+ L RH + IH+
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHS 55
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 60 YKCKYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKK-HEADDG 116
+ C+ C R+F+ +L+RH R+ H EKP+ C LC+R F ++ L RH +K H + G
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRS-HTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGNLG 59
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 791 YKCKYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKK-HEADDG 847
+ C+ C R+F+ +L+RH R+ H EKP+ C LC+R F ++ L RH +K H + G
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRS-HTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGNLG 59
Score = 38.1 bits (87), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 28/46 (60%)
Query: 255 ACQECGKTFATSSGLKQHTHIHSSVKPFRCEVCHKAYTQFSNLCRH 300
C+ C + FA LK+H H++ KP+ C +C++A+T+ L RH
Sbjct: 4 VCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRH 49
Score = 33.9 bits (76), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 225 FPCENCTKVFSDPSNLQRHIRTHHVGARQHACQECGKTFATSSGLKQHTH-IHSS 278
F CE CT+ F+ +L+RH R+ H + + C C + F L +H IHS
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRS-HTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 30.4 bits (67), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 198 YRCESCSQTFCWRPHLNFH-QAQVHGRKFPCENCTKVFSDPSNLQRHIRTHHVG 250
+ CE C++ F + HL H ++ + + +PC C + F+ L RH + H G
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
>pdb|2CT1|A Chain A, Solution Structure Of The Zinc Finger Domain Of
Transcriptional Repressor Ctcf Protein
Length = 77
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 52 RTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKE-KPFKCPLCDRCFGQQTNLDRHLKK 110
RTH+GE+PY+C C F+ S ++ H+ H + F CP CD ++++L HL+K
Sbjct: 8 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRK 67
Query: 111 HEADDG 116
+ G
Sbjct: 68 QHSYSG 73
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 783 RTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKE-KPFKCPLCDRCFGQQTNLDRHLKK 841
RTH+GE+PY+C C F+ S ++ H+ H + F CP CD ++++L HL+K
Sbjct: 8 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRK 67
Query: 842 HEADDG 847
+ G
Sbjct: 68 QHSYSG 73
Score = 30.8 bits (68), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Query: 276 HSSVKPFRCEVCHKAYTQFSNLCRH-KRMHANCRMQIKCVKCDQSFSTVTSLSKHKR 331
HS KP+ C +CH +TQ + H + H + C CD + + L H R
Sbjct: 10 HSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLR 66
>pdb|1TF3|A Chain A, Tfiiia Finger 1-3 Bound To Dna, Nmr, 22 Structures
Length = 92
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 44/86 (51%), Gaps = 7/86 (8%)
Query: 31 RYACKY--CGKVFPRSANLTRHLRTHTGEQPYKCKY--CERSFSISSNLQRHVRNIHNKE 86
RY C + CG + ++ L HL HTGE+P+ CK CE+ F+ +L RH H E
Sbjct: 3 RYICSFADCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSL-THTGE 61
Query: 87 KPFKCPL--CDRCFGQQTNLDRHLKK 110
K F C CD F + N+ +H +
Sbjct: 62 KNFTCDSDGCDLRFTTKANMKKHFNR 87
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 44/86 (51%), Gaps = 7/86 (8%)
Query: 762 RYACKY--CGKVFPRSANLTRHLRTHTGEQPYKCKY--CERSFSISSNLQRHVRNIHNKE 817
RY C + CG + ++ L HL HTGE+P+ CK CE+ F+ +L RH H E
Sbjct: 3 RYICSFADCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSL-THTGE 61
Query: 818 KPFKCPL--CDRCFGQQTNLDRHLKK 841
K F C CD F + N+ +H +
Sbjct: 62 KNFTCDSDGCDLRFTTKANMKKHFNR 87
Score = 39.3 bits (90), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 37 CGKVFPRSANLTRHLRTHTGEQPYKCKY--CERSFSISSNLQRHVRNIHN 84
C K F +LTRH THTGE+ + C C+ F+ +N+++H HN
Sbjct: 41 CEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHN 90
Score = 39.3 bits (90), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 768 CGKVFPRSANLTRHLRTHTGEQPYKCKY--CERSFSISSNLQRHVRNIHN 815
C K F +LTRH THTGE+ + C C+ F+ +N+++H HN
Sbjct: 41 CEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHN 90
Score = 35.0 bits (79), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 5/76 (6%)
Query: 258 ECGKTFATSSGLKQHTHIHSSVKPFRC--EVCHKAYTQFSNLCRHKRMHANCRMQIKCVK 315
+CG + + L+ H H+ KPF C E C K +T +L RH H C
Sbjct: 10 DCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTG-EKNFTCDS 68
Query: 316 --CDQSFSTVTSLSKH 329
CD F+T ++ KH
Sbjct: 69 DGCDLRFTTKANMKKH 84
Score = 30.0 bits (66), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 8/69 (11%)
Query: 209 WRPHLNFHQAQVHGRK-FPC--ENCTKVFSDPSNLQRHIRTHHVGARQHACQE--CGKTF 263
W+ L H ++ G K FPC E C K F+ +L RH T H G + C C F
Sbjct: 19 WK--LQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLT-HTGEKNFTCDSDGCDLRF 75
Query: 264 ATSSGLKQH 272
T + +K+H
Sbjct: 76 TTKANMKKH 84
>pdb|2EPA|A Chain A, Solution Structure Of The First And Second Zf-C2h2
Domains From Human Krueppel-Like Factor 10
Length = 72
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 31/47 (65%), Gaps = 2/47 (4%)
Query: 37 CGKVFPRSANLTRHLRTHTGEQPYKCKY--CERSFSISSNLQRHVRN 81
CGK + +S++L H RTHTGE+P+ C + CER F+ S L RH R
Sbjct: 25 CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRT 71
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 31/47 (65%), Gaps = 2/47 (4%)
Query: 768 CGKVFPRSANLTRHLRTHTGEQPYKCKY--CERSFSISSNLQRHVRN 812
CGK + +S++L H RTHTGE+P+ C + CER F+ S L RH R
Sbjct: 25 CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRT 71
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Query: 252 RQHACQE--CGKTFATSSGLKQHTHIHSSVKPFRCEV--CHKAYTQFSNLCRHKRMH 304
R H C CGKT+ SS LK HT H+ KPF C C + + + L RH+R H
Sbjct: 16 RSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 36.2 bits (82), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 7/63 (11%)
Query: 51 LRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKCPL--CDRCFGQQTNLDRHL 108
+R+H P C +++ SS+L+ H R H EKPF C C+R F + L RH
Sbjct: 15 IRSHICSHPG----CGKTYFKSSHLKAHTRT-HTGEKPFSCSWKGCERRFARSDELSRHR 69
Query: 109 KKH 111
+ H
Sbjct: 70 RTH 72
Score = 36.2 bits (82), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 7/63 (11%)
Query: 782 LRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKCPL--CDRCFGQQTNLDRHL 839
+R+H P C +++ SS+L+ H R H EKPF C C+R F + L RH
Sbjct: 15 IRSHICSHPG----CGKTYFKSSHLKAHTRT-HTGEKPFSCSWKGCERRFARSDELSRHR 69
Query: 840 KKH 842
+ H
Sbjct: 70 RTH 72
>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens,
Northeast Structural Genomics Consortium
Length = 74
Score = 50.1 bits (118), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 88
Y C C F NL H HTGE+PY+C C F+ +NL+ H R IH+ EKP
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTR-IHSGEKP 73
Score = 50.1 bits (118), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 819
Y C C F NL H HTGE+PY+C C F+ +NL+ H R IH+ EKP
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTR-IHSGEKP 73
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 57 EQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKHEAD 114
++PYKC C+ SF NL H + +H EKP++C +C F + NL H + H +
Sbjct: 15 DKPYKCDRCQASFRYKGNLASH-KTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGE 71
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 788 EQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKHEAD 845
++PYKC C+ SF NL H + +H EKP++C +C F + NL H + H +
Sbjct: 15 DKPYKCDRCQASFRYKGNLASH-KTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGE 71
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 225 FPCENCTKVFSDPSNLQRHIRTHHVGARQHACQECGKTFATSSGLKQHTHIHSSVKP 281
+ C+ C F NL H +T H G + + C CG F + LK HT IHS KP
Sbjct: 18 YKCDRCQASFRYKGNLASH-KTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 27/53 (50%)
Query: 254 HACQECGKTFATSSGLKQHTHIHSSVKPFRCEVCHKAYTQFSNLCRHKRMHAN 306
+ C C +F L H +H+ KP+RC +C + + +NL H R+H+
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSG 70
Score = 37.4 bits (85), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 26/57 (45%)
Query: 3 PYANKPFQEILTSQNNAVNGSSSKTTKDRYACKYCGKVFPRSANLTRHLRTHTGEQP 59
PY Q + N + + T + Y C CG F R ANL H R H+GE+P
Sbjct: 17 PYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 37.4 bits (85), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 26/57 (45%)
Query: 734 PYANKPFQEILTSQNNAVNGSSSKTTKDRYACKYCGKVFPRSANLTRHLRTHTGEQP 790
PY Q + N + + T + Y C CG F R ANL H R H+GE+P
Sbjct: 17 PYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 198 YRCESCSQTFCWRPHLNFHQAQVHGRK-FPCENCTKVFSDPSNLQRHIRTH 247
Y+C+ C +F ++ +L H+ G K + C C F+ P+NL+ H R H
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIH 68
>pdb|4GZN|C Chain C, Mouse Zfp57 Zinc Fingers In Complex With Methylated Dna
Length = 60
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Query: 57 EQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKHE 112
E+P+ C +C +++ +S L RH R H +P CP C +CF Q+ ++RHLK H+
Sbjct: 2 ERPFFCNFCGKTYRDASGLSRH-RRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQ 56
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Query: 788 EQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKHE 843
E+P+ C +C +++ +S L RH R H +P CP C +CF Q+ ++RHLK H+
Sbjct: 2 ERPFFCNFCGKTYRDASGLSRH-RRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQ 56
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 223 RKFPCENCTKVFSDPSNLQRHIRTHHVGARQHACQECGKTFATSSGLKQHTHIH 276
R F C C K + D S L RH R H +G R +C ECGK F S + +H +H
Sbjct: 3 RPFFCNFCGKTYRDASGLSRHRRAH-LGYRPRSCPECGKCFRDQSEVNRHLKVH 55
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 30/54 (55%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNK 85
+ C +CGK + ++ L+RH R H G +P C C + F S + RH++ NK
Sbjct: 5 FFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQNK 58
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 30/54 (55%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNK 816
+ C +CGK + ++ L+RH R H G +P C C + F S + RH++ NK
Sbjct: 5 FFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQNK 58
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 27/51 (52%)
Query: 256 CQECGKTFATSSGLKQHTHIHSSVKPFRCEVCHKAYTQFSNLCRHKRMHAN 306
C CGKT+ +SGL +H H +P C C K + S + RH ++H N
Sbjct: 7 CNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQN 57
Score = 33.1 bits (74), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 278 SVKPFRCEVCHKAYTQFSNLCRHKRMHANCRMQIKCVKCDQSFSTVTSLSKH 329
S +PF C C K Y S L RH+R H R + C +C + F + +++H
Sbjct: 1 SERPFFCNFCGKTYRDASGLSRHRRAHLGYRPR-SCPECGKCFRDQSEVNRH 51
>pdb|2LT7|A Chain A, Solution Nmr Structure Of Kaiso Zinc Finger Dna Binding
Domain In Complex With Kaiso Binding Site Dna
pdb|4F6M|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Domain
In Complex With Kaiso Binding Site Dna
pdb|4F6N|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Protein
In Complex With Methylated Cpg Site Dna
Length = 133
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 3/74 (4%)
Query: 13 LTSQNNAVNGSSSKTTKDRYACKYCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSIS 72
LTS N S + +Y C+YC KVFP + T+H HTGE+ Y+C C +SF
Sbjct: 35 LTSLRRHFNIHS---WEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLACGKSFINY 91
Query: 73 SNLQRHVRNIHNKE 86
+ H++++H+++
Sbjct: 92 QFMSSHIKSVHSQD 105
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 3/74 (4%)
Query: 744 LTSQNNAVNGSSSKTTKDRYACKYCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSIS 803
LTS N S + +Y C+YC KVFP + T+H HTGE+ Y+C C +SF
Sbjct: 35 LTSLRRHFNIHS---WEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLACGKSFINY 91
Query: 804 SNLQRHVRNIHNKE 817
+ H++++H+++
Sbjct: 92 QFMSSHIKSVHSQD 105
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 91
Y C C + + +L RH H+ E+ Y C+YCE+ F ++ +H + H E+ ++C
Sbjct: 23 YICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIH-HTGERRYQC 81
Query: 92 PLCDRCFGQQTNLDRHLKKHEADDGSG 118
C + F + H+K + D SG
Sbjct: 82 LACGKSFINYQFMSSHIKSVHSQDPSG 108
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 822
Y C C + + +L RH H+ E+ Y C+YCE+ F ++ +H + H E+ ++C
Sbjct: 23 YICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIH-HTGERRYQC 81
Query: 823 PLCDRCFGQQTNLDRHLKKHEADDGSG 849
C + F + H+K + D SG
Sbjct: 82 LACGKSFINYQFMSSHIKSVHSQDPSG 108
Score = 38.1 bits (87), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 46/102 (45%), Gaps = 5/102 (4%)
Query: 250 GARQHACQECGKTFATSSGLKQHTHIHSSVKPFRCEVCHKAYTQFSNLCRHKRMHANCRM 309
G + C C +++ + L++H +IHS K + C C K + +H+ H R
Sbjct: 19 GRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGER- 77
Query: 310 QIKCVKCDQSFSTVTSLSKHKRFCDSTTPGTTPSGQNSLSAM 351
+ +C+ C +SF +S H + + PSG + L +
Sbjct: 78 RYQCLACGKSFINYQFMSSHIK----SVHSQDPSGDSKLYRL 115
Score = 36.6 bits (83), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 56 GEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCF 98
G Y C C+RS+ ++L+RH NIH+ EK + C C++ F
Sbjct: 19 GRVYYICIVCKRSYVCLTSLRRHF-NIHSWEKKYPCRYCEKVF 60
Score = 36.6 bits (83), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 787 GEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCF 829
G Y C C+RS+ ++L+RH NIH+ EK + C C++ F
Sbjct: 19 GRVYYICIVCKRSYVCLTSLRRHF-NIHSWEKKYPCRYCEKVF 60
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 43/90 (47%), Gaps = 2/90 (2%)
Query: 212 HLNFHQAQVHGR-KFPCENCTKVFSDPSNLQRHIRTHHVGARQHACQECGKTFATSSGLK 270
H + ++ V GR + C C + + ++L+RH H +++ C+ C K F +
Sbjct: 9 HDDHYELIVDGRVYYICIVCKRSYVCLTSLRRHFNIH-SWEKKYPCRYCEKVFPLAEYRT 67
Query: 271 QHTHIHSSVKPFRCEVCHKAYTQFSNLCRH 300
+H H+ + ++C C K++ + + H
Sbjct: 68 KHEIHHTGERRYQCLACGKSFINYQFMSSH 97
>pdb|1TF6|A Chain A, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
pdb|1TF6|D Chain D, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
Length = 190
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 44/86 (51%), Gaps = 7/86 (8%)
Query: 31 RYACKY--CGKVFPRSANLTRHLRTHTGEQPYKCKY--CERSFSISSNLQRHVRNIHNKE 86
RY C + CG + ++ L HL HTGE+P+ CK CE+ F+ +L RH H E
Sbjct: 12 RYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLT-HTGE 70
Query: 87 KPFKCPL--CDRCFGQQTNLDRHLKK 110
K F C CD F + N+ +H +
Sbjct: 71 KNFTCDSDGCDLRFTTKANMKKHFNR 96
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 44/86 (51%), Gaps = 7/86 (8%)
Query: 762 RYACKY--CGKVFPRSANLTRHLRTHTGEQPYKCKY--CERSFSISSNLQRHVRNIHNKE 817
RY C + CG + ++ L HL HTGE+P+ CK CE+ F+ +L RH H E
Sbjct: 12 RYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLT-HTGE 70
Query: 818 KPFKCPL--CDRCFGQQTNLDRHLKK 841
K F C CD F + N+ +H +
Sbjct: 71 KNFTCDSDGCDLRFTTKANMKKHFNR 96
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 55/114 (48%), Gaps = 8/114 (7%)
Query: 201 ESCSQTFCWRPHLNFHQAQVHGRK-FPCE--NCTKVFSDPSNLQRHI-RTHHVGARQHAC 256
E C + F HL H G K F C+ C F+ +N+++H R H++ + C
Sbjct: 48 EGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVC 107
Query: 257 --QECGKTFATSSGLKQHTHIHSSVKPFRC--EVCHKAYTQFSNLCRHKRMHAN 306
+ CGK F + LK H H+ P+ C E C K ++ S L RH+++HA
Sbjct: 108 HFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG 161
Score = 38.5 bits (88), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Query: 37 CGKVFPRSANLTRHLRTHTGEQPYKCKY--CERSFSISSNLQRHVRNIHN-KEKPFKCPL 93
C K F +LTRH THTGE+ + C C+ F+ +N+++H HN K + C
Sbjct: 50 CEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHF 109
Query: 94 --CDRCFGQQTNLDRH 107
C + F + L H
Sbjct: 110 ENCGKAFKKHNQLKVH 125
Score = 38.5 bits (88), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Query: 768 CGKVFPRSANLTRHLRTHTGEQPYKCKY--CERSFSISSNLQRHVRNIHN-KEKPFKCPL 824
C K F +LTRH THTGE+ + C C+ F+ +N+++H HN K + C
Sbjct: 50 CEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHF 109
Query: 825 --CDRCFGQQTNLDRH 838
C + F + L H
Sbjct: 110 ENCGKAFKKHNQLKVH 125
Score = 38.5 bits (88), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 4/51 (7%)
Query: 32 YACKY--CGKVFPRSANLTRHLRTHTGEQPYKCKY--CERSFSISSNLQRH 78
Y C + CGK F + L H +HT + PY+C + C++ FS+ S L+RH
Sbjct: 105 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRH 155
Score = 38.5 bits (88), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 4/51 (7%)
Query: 763 YACKY--CGKVFPRSANLTRHLRTHTGEQPYKCKY--CERSFSISSNLQRH 809
Y C + CGK F + L H +HT + PY+C + C++ FS+ S L+RH
Sbjct: 105 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRH 155
Score = 33.5 bits (75), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 5/76 (6%)
Query: 258 ECGKTFATSSGLKQHTHIHSSVKPFRC--EVCHKAYTQFSNLCRHKRMHANCRMQIKCVK 315
+CG + + L+ H H+ KPF C E C K +T +L RH H C
Sbjct: 19 DCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTG-EKNFTCDS 77
Query: 316 --CDQSFSTVTSLSKH 329
CD F+T ++ KH
Sbjct: 78 DGCDLRFTTKANMKKH 93
>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
Repeats Of Murine Gli-Kruppel Family Member Hkr3
Length = 124
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 29/53 (54%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHN 84
+ C C + F R L H+ +HTGE PYKC C + F +LQ H+ +H+
Sbjct: 67 FTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHS 119
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 29/53 (54%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHN 815
+ C C + F R L H+ +HTGE PYKC C + F +LQ H+ +H+
Sbjct: 67 FTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHS 119
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Query: 34 CKYCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRH-VRNIHNK-EKPFKC 91
C C K F L H R HTGE+P++C C + + NL H RN N+ E+ F C
Sbjct: 10 CPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTC 69
Query: 92 PLCDRCFGQQTNLDRHLKKHEAD 114
+C F ++ L H+ H +
Sbjct: 70 SVCQETFRRRMELRLHMVSHTGE 92
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Query: 765 CKYCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRH-VRNIHNK-EKPFKC 822
C C K F L H R HTGE+P++C C + + NL H RN N+ E+ F C
Sbjct: 10 CPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTC 69
Query: 823 PLCDRCFGQQTNLDRHLKKHEAD 845
+C F ++ L H+ H +
Sbjct: 70 SVCQETFRRRMELRLHMVSHTGE 92
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 4/90 (4%)
Query: 32 YACKYCGKVFPRSANLTRHLR---THTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 88
+ C CGK + R NL H + EQ + C C+ +F L+ H+ + H E P
Sbjct: 36 FECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMVS-HTGEMP 94
Query: 89 FKCPLCDRCFGQQTNLDRHLKKHEADDGSG 118
+KC C + F Q+ +L H+ K + SG
Sbjct: 95 YKCSSCSQQFMQKKDLQSHMIKLHSGPSSG 124
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 4/90 (4%)
Query: 763 YACKYCGKVFPRSANLTRHLR---THTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 819
+ C CGK + R NL H + EQ + C C+ +F L+ H+ + H E P
Sbjct: 36 FECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMVS-HTGEMP 94
Query: 820 FKCPLCDRCFGQQTNLDRHLKKHEADDGSG 849
+KC C + F Q+ +L H+ K + SG
Sbjct: 95 YKCSSCSQQFMQKKDLQSHMIKLHSGPSSG 124
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 42/106 (39%), Gaps = 5/106 (4%)
Query: 227 CENCTKVFSDPSNLQRHIRTHHVGARQHACQECGKTFATSSGLKQHTH---IHSSVKPFR 283
C C K F L+ H R H G + C +CGK + L +H ++ S + F
Sbjct: 10 CPTCHKKFLSKYYLKVHNRKH-TGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFT 68
Query: 284 CEVCHKAYTQFSNLCRHKRMHANCRMQIKCVKCDQSFSTVTSLSKH 329
C VC + + + L H H M KC C Q F L H
Sbjct: 69 CSVCQETFRRRMELRLHMVSHTG-EMPYKCSSCSQQFMQKKDLQSH 113
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 43/101 (42%), Gaps = 3/101 (2%)
Query: 200 CESCSQTFCWRPHLNFHQAQVHGRK-FPCENCTKVFSDPSNLQRHIRTHHVGARQHA--C 256
C +C + F + +L H + G K F C C K + NL H + + + C
Sbjct: 10 CPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTC 69
Query: 257 QECGKTFATSSGLKQHTHIHSSVKPFRCEVCHKAYTQFSNL 297
C +TF L+ H H+ P++C C + + Q +L
Sbjct: 70 SVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDL 110
>pdb|1BBO|A Chain A, High-Resolution Solution Structure Of The Double
Cys2His2 Zinc Finger From The Human Enhancer Binding
Protein Mbp-1
Length = 57
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 31/51 (60%)
Query: 31 RYACKYCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRN 81
+Y C+ CG + + L +H+RTHT +PY C YC SF NL +H+++
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKS 51
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 31/51 (60%)
Query: 762 RYACKYCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRN 812
+Y C+ CG + + L +H+RTHT +PY C YC SF NL +H+++
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKS 51
Score = 36.6 bits (83), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 30/54 (55%)
Query: 253 QHACQECGKTFATSSGLKQHTHIHSSVKPFRCEVCHKAYTQFSNLCRHKRMHAN 306
++ C+ECG S LK+H H+ V+P+ C C+ ++ NL +H + A+
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAH 54
Score = 36.2 bits (82), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 224 KFPCENCTKVFSDPSNLQRHIRTHHVGARQHACQECGKTFATSSGLKQH 272
K+ CE C PS L++HIRT H R + C C +F T L +H
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRT-HTDVRPYHCTYCNFSFKTKGNLTKH 48
Score = 30.8 bits (68), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 60 YKCKYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLK 109
Y C+ C S L++H+R H +P+ C C+ F + NL +H+K
Sbjct: 2 YICEECGIRXKKPSMLKKHIRT-HTDVRPYHCTYCNFSFKTKGNLTKHMK 50
Score = 30.8 bits (68), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 791 YKCKYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLK 840
Y C+ C S L++H+R H +P+ C C+ F + NL +H+K
Sbjct: 2 YICEECGIRXKKPSMLKKHIRT-HTDVRPYHCTYCNFSFKTKGNLTKHMK 50
>pdb|1X6H|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Transcriptional Repressor Ctcf
Length = 86
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Query: 52 RTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKE---KPFKCPLCDRCFGQQTNLDRHL 108
RTHTGE+PY C +C+++F L H + H+ F C C + F ++ + RH
Sbjct: 8 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHA 67
Query: 109 KKHEADDG 116
DG
Sbjct: 68 DNCAGPDG 75
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Query: 783 RTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKE---KPFKCPLCDRCFGQQTNLDRHL 839
RTHTGE+PY C +C+++F L H + H+ F C C + F ++ + RH
Sbjct: 8 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHA 67
Query: 840 KKHEADDG 847
DG
Sbjct: 68 DNCAGPDG 75
>pdb|2EME|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
725- 757) Of Human Zinc Finger Protein 473
Length = 46
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/28 (64%), Positives = 19/28 (67%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQP 59
Y C YCGK F SA L RH R HTGE+P
Sbjct: 13 YVCDYCGKAFGLSAELVRHQRIHTGEKP 40
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/28 (64%), Positives = 19/28 (67%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQP 790
Y C YCGK F SA L RH R HTGE+P
Sbjct: 13 YVCDYCGKAFGLSAELVRHQRIHTGEKP 40
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 57 EQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 88
E+PY C YC ++F +S+ L RH R IH EKP
Sbjct: 10 EKPYVCDYCGKAFGLSAELVRHQR-IHTGEKP 40
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 788 EQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 819
E+PY C YC ++F +S+ L RH R IH EKP
Sbjct: 10 EKPYVCDYCGKAFGLSAELVRHQR-IHTGEKP 40
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 280 KPFRCEVCHKAYTQFSNLCRHKRMHAN 306
KP+ C+ C KA+ + L RH+R+H
Sbjct: 11 KPYVCDYCGKAFGLSAELVRHQRIHTG 37
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 86 EKPFKCPLCDRCFGQQTNLDRHLKKHEADDGSG 118
EKP+ C C + FG L RH + H + SG
Sbjct: 10 EKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSG 42
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 817 EKPFKCPLCDRCFGQQTNLDRHLKKHEADDGSG 849
EKP+ C C + FG L RH + H + SG
Sbjct: 10 EKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSG 42
Score = 30.0 bits (66), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 254 HACQECGKTFATSSGLKQHTHIHSSVKP 281
+ C CGK F S+ L +H IH+ KP
Sbjct: 13 YVCDYCGKAFGLSAELVRHQRIHTGEKP 40
>pdb|2EMA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
312- 344) Of Human Zinc Finger Protein 347
Length = 46
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 22/29 (75%)
Query: 31 RYACKYCGKVFPRSANLTRHLRTHTGEQP 59
RY C CGKVF R++ L++H + HTGE+P
Sbjct: 12 RYKCNECGKVFSRNSQLSQHQKIHTGEKP 40
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 22/29 (75%)
Query: 762 RYACKYCGKVFPRSANLTRHLRTHTGEQP 790
RY C CGKVF R++ L++H + HTGE+P
Sbjct: 12 RYKCNECGKVFSRNSQLSQHQKIHTGEKP 40
Score = 34.3 bits (77), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 252 RQHACQECGKTFATSSGLKQHTHIHSSVKP 281
+++ C ECGK F+ +S L QH IH+ KP
Sbjct: 11 KRYKCNECGKVFSRNSQLSQHQKIHTGEKP 40
>pdb|2YRJ|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(781- 813) From Zinc Finger Protein 473
Length = 46
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 20/28 (71%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQP 59
Y C CGK F + ANLT+H R HTGE+P
Sbjct: 13 YRCGECGKAFAQKANLTQHQRIHTGEKP 40
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 20/28 (71%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQP 790
Y C CGK F + ANLT+H R HTGE+P
Sbjct: 13 YRCGECGKAFAQKANLTQHQRIHTGEKP 40
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 280 KPFRCEVCHKAYTQFSNLCRHKRMHAN 306
KP+RC C KA+ Q +NL +H+R+H
Sbjct: 11 KPYRCGECGKAFAQKANLTQHQRIHTG 37
Score = 35.0 bits (79), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 57 EQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 88
E+PY+C C ++F+ +NL +H R IH EKP
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQR-IHTGEKP 40
Score = 35.0 bits (79), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 788 EQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 819
E+PY+C C ++F+ +NL +H R IH EKP
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQR-IHTGEKP 40
Score = 33.9 bits (76), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 16/26 (61%)
Query: 256 CQECGKTFATSSGLKQHTHIHSSVKP 281
C ECGK FA + L QH IH+ KP
Sbjct: 15 CGECGKAFAQKANLTQHQRIHTGEKP 40
Score = 33.5 bits (75), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 86 EKPFKCPLCDRCFGQQTNLDRHLKKHEADDGSG 118
EKP++C C + F Q+ NL +H + H + SG
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQRIHTGEKPSG 42
Score = 33.5 bits (75), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 817 EKPFKCPLCDRCFGQQTNLDRHLKKHEADDGSG 849
EKP++C C + F Q+ NL +H + H + SG
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQRIHTGEKPSG 42
>pdb|2LV2|A Chain A, Solution Nmr Structure Of C2h2-Type Zinc-Fingers 4 And 5
From Human Insulinoma-Associated Protein 1 (Fragment
424-497), Northeast Structural Genomics Consortium
Target Hr7614b
Length = 85
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Query: 15 SQNNAVNGSSSKTTKDRYACKYCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSN 74
+ V G S+ + + + C CG+ F RHLR Q + CKYC +F S
Sbjct: 14 GEGAGVLGLSA--SAECHLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPG 71
Query: 75 LQRHVRNIHNKE 86
L RH+ H E
Sbjct: 72 LTRHINKCHPSE 83
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Query: 746 SQNNAVNGSSSKTTKDRYACKYCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSN 805
+ V G S+ + + + C CG+ F RHLR Q + CKYC +F S
Sbjct: 14 GEGAGVLGLSA--SAECHLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPG 71
Query: 806 LQRHVRNIHNKE 817
L RH+ H E
Sbjct: 72 LTRHINKCHPSE 83
Score = 30.0 bits (66), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 60 YKCKYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKK 110
+ C C SF+ +RH+R +H + F C C F L RH+ K
Sbjct: 29 HLCPVCGESFASKGAQERHLRLLHAAQV-FPCKYCPATFYSSPGLTRHINK 78
Score = 30.0 bits (66), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 791 YKCKYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKK 841
+ C C SF+ +RH+R +H + F C C F L RH+ K
Sbjct: 29 HLCPVCGESFASKGAQERHLRLLHAAQV-FPCKYCPATFYSSPGLTRHINK 78
>pdb|2DLK|A Chain A, Solution Structure Of The First And The Second Zf-C2h2
Domains Of Zinc Finger Protein 692
Length = 79
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 226 PCE--NCTKVFSDPSNLQRHIRTHHVGARQHACQE--CGKTFATSSGLKQHTHIHSSVKP 281
PC+ C ++FS+ L H + H+ + +C E CGK+F LK+H +HS +
Sbjct: 9 PCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRD 68
Query: 282 FRCEV 286
+ CE
Sbjct: 69 YICEF 73
Score = 29.6 bits (65), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Query: 65 CERSFSISSNLQRHVRNIHNKEKPFKCP--LCDRCFGQQTNLDRHLKKH 111
C R FS L H + H +K F CP C + F + +L H+K H
Sbjct: 15 CGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLH 63
Score = 29.6 bits (65), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Query: 796 CERSFSISSNLQRHVRNIHNKEKPFKCP--LCDRCFGQQTNLDRHLKKH 842
C R FS L H + H +K F CP C + F + +L H+K H
Sbjct: 15 CGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLH 63
>pdb|2DRP|A Chain A, The Crystal Structure Of A Two Zinc-Finger Peptide Reveals
An Extension To The Rules For Zinc-FingerDNA RECOGNITION
pdb|2DRP|D Chain D, The Crystal Structure Of A Two Zinc-Finger Peptide Reveals
An Extension To The Rules For Zinc-FingerDNA RECOGNITION
Length = 66
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 56 GEQPYKCKYCERSFSISSNLQRHVRNIHNKE-KPFKCPLCDRCFGQQTNLDRHLK 109
GE Y+CK C R ++ SN RH H + K + CP C + F ++ N+ H+K
Sbjct: 7 GEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVK 61
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 787 GEQPYKCKYCERSFSISSNLQRHVRNIHNKE-KPFKCPLCDRCFGQQTNLDRHLK 840
GE Y+CK C R ++ SN RH H + K + CP C + F ++ N+ H+K
Sbjct: 7 GEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVK 61
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 32 YACKYCGKVFPRSANLTRHLRT--HTGEQPYKCKYCERSFSISSNLQRHVRNIH 83
Y CK C +V+ +N RH T + Y C +C + F+ N+ HV+ IH
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIH 64
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 763 YACKYCGKVFPRSANLTRHLRT--HTGEQPYKCKYCERSFSISSNLQRHVRNIH 814
Y CK C +V+ +N RH T + Y C +C + F+ N+ HV+ IH
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIH 64
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 282 FRCEVCHKAYTQFSNLCRH 300
+RC+VC + YT SN CRH
Sbjct: 11 YRCKVCSRVYTHISNFCRH 29
>pdb|2YTK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
396- 428) Of Human Zinc Finger Protein 347
Length = 46
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 21/28 (75%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQP 59
Y C CGKVF ++++LT H R HTGE+P
Sbjct: 13 YKCNECGKVFTQNSHLTNHWRIHTGEKP 40
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 21/28 (75%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQP 790
Y C CGKVF ++++LT H R HTGE+P
Sbjct: 13 YKCNECGKVFTQNSHLTNHWRIHTGEKP 40
Score = 33.5 bits (75), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 57 EQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 88
E+PYKC C + F+ +S+L H R IH EKP
Sbjct: 10 EKPYKCNECGKVFTQNSHLTNHWR-IHTGEKP 40
Score = 33.5 bits (75), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 788 EQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 819
E+PYKC C + F+ +S+L H R IH EKP
Sbjct: 10 EKPYKCNECGKVFTQNSHLTNHWR-IHTGEKP 40
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 86 EKPFKCPLCDRCFGQQTNLDRHLKKHEADDGSG 118
EKP+KC C + F Q ++L H + H + SG
Sbjct: 10 EKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSG 42
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 817 EKPFKCPLCDRCFGQQTNLDRHLKKHEADDGSG 849
EKP+KC C + F Q ++L H + H + SG
Sbjct: 10 EKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSG 42
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 280 KPFRCEVCHKAYTQFSNLCRHKRMHAN 306
KP++C C K +TQ S+L H R+H
Sbjct: 11 KPYKCNECGKVFTQNSHLTNHWRIHTG 37
Score = 30.8 bits (68), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 254 HACQECGKTFATSSGLKQHTHIHSSVKP 281
+ C ECGK F +S L H IH+ KP
Sbjct: 13 YKCNECGKVFTQNSHLTNHWRIHTGEKP 40
>pdb|2EPR|A Chain A, Solution Structure Of The Secound Zinc Finger Domain Of
Zinc Finger Protein 278
Length = 48
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 25/37 (67%)
Query: 24 SSKTTKDRYACKYCGKVFPRSANLTRHLRTHTGEQPY 60
SS T+ + AC+ CGK+F +L RH +H+GE+PY
Sbjct: 5 SSGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPY 41
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 25/37 (67%)
Query: 755 SSKTTKDRYACKYCGKVFPRSANLTRHLRTHTGEQPY 791
SS T+ + AC+ CGK+F +L RH +H+GE+PY
Sbjct: 5 SSGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPY 41
>pdb|2EOG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
693- 723) Of Human Zinc Finger Protein 268
Length = 44
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 22/38 (57%)
Query: 22 GSSSKTTKDRYACKYCGKVFPRSANLTRHLRTHTGEQP 59
GSS + Y C CGK F + L H+RTHTGE+P
Sbjct: 1 GSSGSSGVKPYGCSECGKAFRSKSYLIIHMRTHTGEKP 38
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 22/38 (57%)
Query: 753 GSSSKTTKDRYACKYCGKVFPRSANLTRHLRTHTGEQP 790
GSS + Y C CGK F + L H+RTHTGE+P
Sbjct: 1 GSSGSSGVKPYGCSECGKAFRSKSYLIIHMRTHTGEKP 38
Score = 29.6 bits (65), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 250 GARQHACQECGKTFATSSGLKQHTHIHSSVKP 281
G + + C ECGK F + S L H H+ KP
Sbjct: 7 GVKPYGCSECGKAFRSKSYLIIHMRTHTGEKP 38
>pdb|2EMK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
668- 700) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 20/28 (71%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQP 59
Y CK CGK F ++ +L +H R HTGE+P
Sbjct: 13 YECKECGKAFSQTTHLIQHQRVHTGEKP 40
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 20/28 (71%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQP 790
Y CK CGK F ++ +L +H R HTGE+P
Sbjct: 13 YECKECGKAFSQTTHLIQHQRVHTGEKP 40
Score = 34.3 bits (77), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 24/32 (75%), Gaps = 1/32 (3%)
Query: 57 EQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 88
E+PY+CK C ++FS +++L +H R +H EKP
Sbjct: 10 EKPYECKECGKAFSQTTHLIQHQR-VHTGEKP 40
Score = 34.3 bits (77), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 24/32 (75%), Gaps = 1/32 (3%)
Query: 788 EQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 819
E+PY+CK C ++FS +++L +H R +H EKP
Sbjct: 10 EKPYECKECGKAFSQTTHLIQHQR-VHTGEKP 40
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 20/27 (74%)
Query: 280 KPFRCEVCHKAYTQFSNLCRHKRMHAN 306
KP+ C+ C KA++Q ++L +H+R+H
Sbjct: 11 KPYECKECGKAFSQTTHLIQHQRVHTG 37
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 256 CQECGKTFATSSGLKQHTHIHSSVKP 281
C+ECGK F+ ++ L QH +H+ KP
Sbjct: 15 CKECGKAFSQTTHLIQHQRVHTGEKP 40
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 86 EKPFKCPLCDRCFGQQTNLDRHLKKHEADDGSG 118
EKP++C C + F Q T+L +H + H + SG
Sbjct: 10 EKPYECKECGKAFSQTTHLIQHQRVHTGEKPSG 42
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 817 EKPFKCPLCDRCFGQQTNLDRHLKKHEADDGSG 849
EKP++C C + F Q T+L +H + H + SG
Sbjct: 10 EKPYECKECGKAFSQTTHLIQHQRVHTGEKPSG 42
>pdb|2EQ2|A Chain A, Solution Structure Of The 16th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 39.3 bits (90), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQP 59
Y C CGK F +++ L RH R HTGE+P
Sbjct: 13 YQCNECGKAFSQTSKLARHQRVHTGEKP 40
Score = 39.3 bits (90), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQP 790
Y C CGK F +++ L RH R HTGE+P
Sbjct: 13 YQCNECGKAFSQTSKLARHQRVHTGEKP 40
Score = 34.7 bits (78), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 280 KPFRCEVCHKAYTQFSNLCRHKRMHAN 306
KP++C C KA++Q S L RH+R+H
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTG 37
Score = 33.9 bits (76), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Query: 58 QPYKCKYCERSFSISSNLQRHVRNIHNKEKP 88
+PY+C C ++FS +S L RH R +H EKP
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQR-VHTGEKP 40
Score = 33.9 bits (76), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Query: 789 QPYKCKYCERSFSISSNLQRHVRNIHNKEKP 819
+PY+C C ++FS +S L RH R +H EKP
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQR-VHTGEKP 40
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 256 CQECGKTFATSSGLKQHTHIHSSVKP 281
C ECGK F+ +S L +H +H+ KP
Sbjct: 15 CNECGKAFSQTSKLARHQRVHTGEKP 40
Score = 29.6 bits (65), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 87 KPFKCPLCDRCFGQQTNLDRHLKKHEADDGSG 118
KP++C C + F Q + L RH + H + SG
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGEKPSG 42
Score = 29.6 bits (65), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 818 KPFKCPLCDRCFGQQTNLDRHLKKHEADDGSG 849
KP++C C + F Q + L RH + H + SG
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGEKPSG 42
>pdb|2YTR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
760- 792) Of Human Zinc Finger Protein 347
Length = 46
Score = 39.3 bits (90), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQP 59
Y C CGK F +++ L RH R HTGE+P
Sbjct: 13 YKCNECGKAFSQTSKLARHQRIHTGEKP 40
Score = 39.3 bits (90), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQP 790
Y C CGK F +++ L RH R HTGE+P
Sbjct: 13 YKCNECGKAFSQTSKLARHQRIHTGEKP 40
Score = 37.7 bits (86), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 57 EQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 88
E+PYKC C ++FS +S L RH R IH EKP
Sbjct: 10 EKPYKCNECGKAFSQTSKLARHQR-IHTGEKP 40
Score = 37.7 bits (86), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 788 EQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 819
E+PYKC C ++FS +S L RH R IH EKP
Sbjct: 10 EKPYKCNECGKAFSQTSKLARHQR-IHTGEKP 40
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 280 KPFRCEVCHKAYTQFSNLCRHKRMHAN 306
KP++C C KA++Q S L RH+R+H
Sbjct: 11 KPYKCNECGKAFSQTSKLARHQRIHTG 37
Score = 32.7 bits (73), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 86 EKPFKCPLCDRCFGQQTNLDRHLKKHEADDGSG 118
EKP+KC C + F Q + L RH + H + SG
Sbjct: 10 EKPYKCNECGKAFSQTSKLARHQRIHTGEKPSG 42
Score = 32.7 bits (73), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 817 EKPFKCPLCDRCFGQQTNLDRHLKKHEADDGSG 849
EKP+KC C + F Q + L RH + H + SG
Sbjct: 10 EKPYKCNECGKAFSQTSKLARHQRIHTGEKPSG 42
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 254 HACQECGKTFATSSGLKQHTHIHSSVKP 281
+ C ECGK F+ +S L +H IH+ KP
Sbjct: 13 YKCNECGKAFSQTSKLARHQRIHTGEKP 40
>pdb|7ZNF|A Chain A, Alternating Zinc Fingers In The Human Male Associated
Protein Zfy: 2d Nmr Structure Of An Even Finger And
Implications For "jumping-Linker" Dna Recognition
Length = 30
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 24/30 (80%)
Query: 58 QPYKCKYCERSFSISSNLQRHVRNIHNKEK 87
+ Y+C+YCE+ F+ SSNL+ H++ H+KEK
Sbjct: 1 KTYQCQYCEKRFADSSNLKTHIKTKHSKEK 30
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 24/30 (80%)
Query: 789 QPYKCKYCERSFSISSNLQRHVRNIHNKEK 818
+ Y+C+YCE+ F+ SSNL+ H++ H+KEK
Sbjct: 1 KTYQCQYCEKRFADSSNLKTHIKTKHSKEK 30
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 225 FPCENCTKVFSDPSNLQRHIRTHH 248
+ C+ C K F+D SNL+ HI+T H
Sbjct: 3 YQCQYCEKRFADSSNLKTHIKTKH 26
>pdb|1UN6|B Chain B, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|C Chain C, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|D Chain D, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|2HGH|A Chain A, Transcription Factor Iiia Zinc Fingers 4-6 Bound To 5s
Rrna 55mer (Nmr Structure)
Length = 87
Score = 38.9 bits (89), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 4/51 (7%)
Query: 32 YACKY--CGKVFPRSANLTRHLRTHTGEQPYKCKY--CERSFSISSNLQRH 78
Y C + CGK F + L H +HT + PY+C + C++ FS+ S L+RH
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRH 52
Score = 38.9 bits (89), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 4/51 (7%)
Query: 763 YACKY--CGKVFPRSANLTRHLRTHTGEQPYKCKY--CERSFSISSNLQRH 809
Y C + CGK F + L H +HT + PY+C + C++ FS+ S L+RH
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRH 52
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 257 QECGKTFATSSGLKQHTHIHSSVKPFRC--EVCHKAYTQFSNLCRHKRMHAN 306
+ CGK F + LK H H+ P+ C E C K ++ S L RH+++HA
Sbjct: 7 ENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG 58
>pdb|2EM3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
640- 672) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 38.9 bits (89), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 20/28 (71%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQP 59
Y CK C K F + A+L +H +THTGE+P
Sbjct: 13 YECKVCSKAFTQKAHLAQHQKTHTGEKP 40
Score = 38.9 bits (89), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 20/28 (71%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQP 790
Y CK C K F + A+L +H +THTGE+P
Sbjct: 13 YECKVCSKAFTQKAHLAQHQKTHTGEKP 40
Score = 33.9 bits (76), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 20/27 (74%)
Query: 280 KPFRCEVCHKAYTQFSNLCRHKRMHAN 306
KP+ C+VC KA+TQ ++L +H++ H
Sbjct: 11 KPYECKVCSKAFTQKAHLAQHQKTHTG 37
Score = 33.9 bits (76), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 86 EKPFKCPLCDRCFGQQTNLDRHLKKHEADDGSG 118
EKP++C +C + F Q+ +L +H K H + SG
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSG 42
Score = 33.9 bits (76), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 817 EKPFKCPLCDRCFGQQTNLDRHLKKHEADDGSG 849
EKP++C +C + F Q+ +L +H K H + SG
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSG 42
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 57 EQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 88
E+PY+CK C ++F+ ++L +H + H EKP
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQH-QKTHTGEKP 40
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 788 EQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 819
E+PY+CK C ++F+ ++L +H + H EKP
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQH-QKTHTGEKP 40
>pdb|2ENE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
592- 624) Of Human Zinc Finger Protein 347
Length = 46
Score = 38.9 bits (89), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 20/28 (71%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQP 59
Y C CGKVF ++ L+RH R HTGE+P
Sbjct: 13 YKCNECGKVFRHNSYLSRHQRIHTGEKP 40
Score = 38.9 bits (89), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 20/28 (71%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQP 790
Y C CGKVF ++ L+RH R HTGE+P
Sbjct: 13 YKCNECGKVFRHNSYLSRHQRIHTGEKP 40
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 57 EQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 88
E+PYKC C + F +S L RH R IH EKP
Sbjct: 10 EKPYKCNECGKVFRHNSYLSRHQR-IHTGEKP 40
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 788 EQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 819
E+PYKC C + F +S L RH R IH EKP
Sbjct: 10 EKPYKCNECGKVFRHNSYLSRHQR-IHTGEKP 40
Score = 30.4 bits (67), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 254 HACQECGKTFATSSGLKQHTHIHSSVKP 281
+ C ECGK F +S L +H IH+ KP
Sbjct: 13 YKCNECGKVFRHNSYLSRHQRIHTGEKP 40
Score = 30.0 bits (66), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 86 EKPFKCPLCDRCFGQQTNLDRHLKKHEADDGSG 118
EKP+KC C + F + L RH + H + SG
Sbjct: 10 EKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSG 42
Score = 30.0 bits (66), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 817 EKPFKCPLCDRCFGQQTNLDRHLKKHEADDGSG 849
EKP+KC C + F + L RH + H + SG
Sbjct: 10 EKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSG 42
>pdb|2EQ0|A Chain A, Solution Structure Of The 8th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 38.9 bits (89), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 20/28 (71%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQP 59
Y C CGKVF R+++L RH HTGE+P
Sbjct: 13 YKCHECGKVFRRNSHLARHQLIHTGEKP 40
Score = 38.9 bits (89), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 20/28 (71%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQP 790
Y C CGKVF R+++L RH HTGE+P
Sbjct: 13 YKCHECGKVFRRNSHLARHQLIHTGEKP 40
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 57 EQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 88
E+PYKC C + F +S+L RH + IH EKP
Sbjct: 10 EKPYKCHECGKVFRRNSHLARH-QLIHTGEKP 40
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 788 EQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 819
E+PYKC C + F +S+L RH + IH EKP
Sbjct: 10 EKPYKCHECGKVFRRNSHLARH-QLIHTGEKP 40
Score = 30.0 bits (66), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 256 CQECGKTFATSSGLKQHTHIHSSVKP 281
C ECGK F +S L +H IH+ KP
Sbjct: 15 CHECGKVFRRNSHLARHQLIHTGEKP 40
>pdb|2YRH|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(699- 729) From Zinc Finger Protein 473
Length = 44
Score = 38.5 bits (88), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 24/38 (63%)
Query: 22 GSSSKTTKDRYACKYCGKVFPRSANLTRHLRTHTGEQP 59
GSS + K C CGK F +S+ L++H R H+GE+P
Sbjct: 1 GSSGSSGKKPLVCNECGKTFRQSSCLSKHQRIHSGEKP 38
Score = 38.5 bits (88), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 24/38 (63%)
Query: 753 GSSSKTTKDRYACKYCGKVFPRSANLTRHLRTHTGEQP 790
GSS + K C CGK F +S+ L++H R H+GE+P
Sbjct: 1 GSSGSSGKKPLVCNECGKTFRQSSCLSKHQRIHSGEKP 38
Score = 34.7 bits (78), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 19/32 (59%)
Query: 250 GARQHACQECGKTFATSSGLKQHTHIHSSVKP 281
G + C ECGKTF SS L +H IHS KP
Sbjct: 7 GKKPLVCNECGKTFRQSSCLSKHQRIHSGEKP 38
>pdb|2EM2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
584- 616) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 38.5 bits (88), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 20/28 (71%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQP 59
+ CK CGK F ++ +L HLR HTGE+P
Sbjct: 13 FKCKECGKAFRQNIHLASHLRIHTGEKP 40
Score = 38.5 bits (88), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 20/28 (71%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQP 790
+ CK CGK F ++ +L HLR HTGE+P
Sbjct: 13 FKCKECGKAFRQNIHLASHLRIHTGEKP 40
Score = 33.5 bits (75), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 86 EKPFKCPLCDRCFGQQTNLDRHLKKHEADDGSG 118
EKPFKC C + F Q +L HL+ H + SG
Sbjct: 10 EKPFKCKECGKAFRQNIHLASHLRIHTGEKPSG 42
Score = 33.5 bits (75), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 817 EKPFKCPLCDRCFGQQTNLDRHLKKHEADDGSG 849
EKPFKC C + F Q +L HL+ H + SG
Sbjct: 10 EKPFKCKECGKAFRQNIHLASHLRIHTGEKPSG 42
Score = 32.7 bits (73), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 57 EQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 88
E+P+KCK C ++F + +L H+R IH EKP
Sbjct: 10 EKPFKCKECGKAFRQNIHLASHLR-IHTGEKP 40
Score = 32.7 bits (73), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 788 EQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 819
E+P+KCK C ++F + +L H+R IH EKP
Sbjct: 10 EKPFKCKECGKAFRQNIHLASHLR-IHTGEKP 40
Score = 29.6 bits (65), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 280 KPFRCEVCHKAYTQFSNLCRHKRMHAN 306
KPF+C+ C KA+ Q +L H R+H
Sbjct: 11 KPFKCKECGKAFRQNIHLASHLRIHTG 37
>pdb|2J7J|A Chain A, Invariance Of The Zinc Finger Module: A Comparison Of
The Free Structure With Those In Nucleic-Acid Complexes
Length = 85
Score = 38.5 bits (88), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 4/51 (7%)
Query: 32 YACKY--CGKVFPRSANLTRHLRTHTGEQPYKCKY--CERSFSISSNLQRH 78
Y C + CGK F + L H +HT + PY+C + C++ FS+ S L+RH
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRH 52
Score = 38.5 bits (88), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 4/51 (7%)
Query: 763 YACKY--CGKVFPRSANLTRHLRTHTGEQPYKCKY--CERSFSISSNLQRH 809
Y C + CGK F + L H +HT + PY+C + C++ FS+ S L+RH
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRH 52
Score = 31.2 bits (69), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 257 QECGKTFATSSGLKQHTHIHSSVKPFRC--EVCHKAYTQFSNLCRHKRMHAN 306
+ CGK F + LK H H+ P+ C E C K ++ S L RH+++HA
Sbjct: 7 ENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG 58
>pdb|2YSV|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 17 In
Zinc Finger Protein 473
Length = 42
Score = 38.1 bits (87), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 23/36 (63%)
Query: 22 GSSSKTTKDRYACKYCGKVFPRSANLTRHLRTHTGE 57
GSS + + Y C+ CGK F +S+ L+ H R HTGE
Sbjct: 1 GSSGSSGEKPYVCQECGKAFTQSSCLSIHRRVHTGE 36
Score = 38.1 bits (87), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 23/36 (63%)
Query: 753 GSSSKTTKDRYACKYCGKVFPRSANLTRHLRTHTGE 788
GSS + + Y C+ CGK F +S+ L+ H R HTGE
Sbjct: 1 GSSGSSGEKPYVCQECGKAFTQSSCLSIHRRVHTGE 36
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 277 SSVKPFRCEVCHKAYTQFSNLCRHKRMHAN 306
S KP+ C+ C KA+TQ S L H+R+H
Sbjct: 6 SGEKPYVCQECGKAFTQSSCLSIHRRVHTG 35
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 55 TGEQPYKCKYCERSFSISSNLQRHVRNIHNKE 86
+GE+PY C+ C ++F+ SS L H R +H E
Sbjct: 6 SGEKPYVCQECGKAFTQSSCLSIH-RRVHTGE 36
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 786 TGEQPYKCKYCERSFSISSNLQRHVRNIHNKE 817
+GE+PY C+ C ++F+ SS L H R +H E
Sbjct: 6 SGEKPYVCQECGKAFTQSSCLSIH-RRVHTGE 36
Score = 30.4 bits (67), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 250 GARQHACQECGKTFATSSGLKQHTHIHS 277
G + + CQECGK F SS L H +H+
Sbjct: 7 GEKPYVCQECGKAFTQSSCLSIHRRVHT 34
>pdb|2YU8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
648- 680) Of Human Zinc Finger Protein 347
Length = 46
Score = 38.1 bits (87), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 20/28 (71%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQP 59
Y C CGKVF ++++L RH R HTG +P
Sbjct: 13 YKCNECGKVFTQNSHLARHRRVHTGGKP 40
Score = 38.1 bits (87), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 20/28 (71%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQP 790
Y C CGKVF ++++L RH R HTG +P
Sbjct: 13 YKCNECGKVFTQNSHLARHRRVHTGGKP 40
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 280 KPFRCEVCHKAYTQFSNLCRHKRMHAN 306
KP++C C K +TQ S+L RH+R+H
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRRVHTG 37
Score = 33.1 bits (74), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 57 EQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 88
E+PYKC C + F+ +S+L RH R +H KP
Sbjct: 10 EKPYKCNECGKVFTQNSHLARH-RRVHTGGKP 40
Score = 33.1 bits (74), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 788 EQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 819
E+PYKC C + F+ +S+L RH R +H KP
Sbjct: 10 EKPYKCNECGKVFTQNSHLARH-RRVHTGGKP 40
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 86 EKPFKCPLCDRCFGQQTNLDRHLKKHEADDGSG 118
EKP+KC C + F Q ++L RH + H SG
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRRVHTGGKPSG 42
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 817 EKPFKCPLCDRCFGQQTNLDRHLKKHEADDGSG 849
EKP+KC C + F Q ++L RH + H SG
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRRVHTGGKPSG 42
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 256 CQECGKTFATSSGLKQHTHIHSSVKP 281
C ECGK F +S L +H +H+ KP
Sbjct: 15 CNECGKVFTQNSHLARHRRVHTGGKP 40
>pdb|2YTP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
687- 719) Of Human Zinc Finger Protein 484
Length = 46
Score = 37.7 bits (86), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 17/28 (60%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQP 59
Y C CGK F R + L H R HTGE+P
Sbjct: 13 YECSECGKAFARKSTLIMHQRIHTGEKP 40
Score = 37.7 bits (86), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 17/28 (60%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQP 790
Y C CGK F R + L H R HTGE+P
Sbjct: 13 YECSECGKAFARKSTLIMHQRIHTGEKP 40
Score = 33.5 bits (75), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 17/30 (56%)
Query: 252 RQHACQECGKTFATSSGLKQHTHIHSSVKP 281
R + C ECGK FA S L H IH+ KP
Sbjct: 11 RHYECSECGKAFARKSTLIMHQRIHTGEKP 40
>pdb|2EMJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
612- 644) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 37.7 bits (86), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 57 EQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 88
E+P++C C +SFSISS L H R IH EKP
Sbjct: 10 EKPFECAECGKSFSISSQLATHQR-IHTGEKP 40
Score = 37.7 bits (86), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 788 EQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 819
E+P++C C +SFSISS L H R IH EKP
Sbjct: 10 EKPFECAECGKSFSISSQLATHQR-IHTGEKP 40
Score = 34.7 bits (78), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQP 59
+ C CGK F S+ L H R HTGE+P
Sbjct: 13 FECAECGKSFSISSQLATHQRIHTGEKP 40
Score = 34.7 bits (78), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQP 790
+ C CGK F S+ L H R HTGE+P
Sbjct: 13 FECAECGKSFSISSQLATHQRIHTGEKP 40
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 256 CQECGKTFATSSGLKQHTHIHSSVKP 281
C ECGK+F+ SS L H IH+ KP
Sbjct: 15 CAECGKSFSISSQLATHQRIHTGEKP 40
Score = 29.6 bits (65), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 280 KPFRCEVCHKAYTQFSNLCRHKRMHAN 306
KPF C C K+++ S L H+R+H
Sbjct: 11 KPFECAECGKSFSISSQLATHQRIHTG 37
>pdb|2EN6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
887- 919) Of Human Zinc Finger Protein 268
Length = 46
Score = 37.7 bits (86), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQP 59
Y C CGK F + + L+ H RTHTGE+P
Sbjct: 13 YGCNECGKTFSQKSILSAHQRTHTGEKP 40
Score = 37.7 bits (86), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQP 790
Y C CGK F + + L+ H RTHTGE+P
Sbjct: 13 YGCNECGKTFSQKSILSAHQRTHTGEKP 40
Score = 30.4 bits (67), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 254 HACQECGKTFATSSGLKQHTHIHSSVKP 281
+ C ECGKTF+ S L H H+ KP
Sbjct: 13 YGCNECGKTFSQKSILSAHQRTHTGEKP 40
Score = 29.6 bits (65), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 57 EQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 88
E+PY C C ++FS S L H R H EKP
Sbjct: 10 EKPYGCNECGKTFSQKSILSAHQRT-HTGEKP 40
Score = 29.6 bits (65), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 788 EQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 819
E+PY C C ++FS S L H R H EKP
Sbjct: 10 EKPYGCNECGKTFSQKSILSAHQRT-HTGEKP 40
>pdb|2ENF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
340- 372) Of Human Zinc Finger Protein 347
Length = 46
Score = 37.7 bits (86), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 20/28 (71%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQP 59
Y C CGKVF ++++L RH HTGE+P
Sbjct: 13 YKCNECGKVFTQNSHLVRHRGIHTGEKP 40
Score = 37.7 bits (86), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 20/28 (71%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQP 790
Y C CGKVF ++++L RH HTGE+P
Sbjct: 13 YKCNECGKVFTQNSHLVRHRGIHTGEKP 40
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 57 EQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 88
E+PYKC C + F+ +S+L RH R IH EKP
Sbjct: 10 EKPYKCNECGKVFTQNSHLVRH-RGIHTGEKP 40
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 788 EQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 819
E+PYKC C + F+ +S+L RH R IH EKP
Sbjct: 10 EKPYKCNECGKVFTQNSHLVRH-RGIHTGEKP 40
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 280 KPFRCEVCHKAYTQFSNLCRHKRMHAN 306
KP++C C K +TQ S+L RH+ +H
Sbjct: 11 KPYKCNECGKVFTQNSHLVRHRGIHTG 37
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 86 EKPFKCPLCDRCFGQQTNLDRHLKKHEADDGSG 118
EKP+KC C + F Q ++L RH H + SG
Sbjct: 10 EKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSG 42
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 817 EKPFKCPLCDRCFGQQTNLDRHLKKHEADDGSG 849
EKP+KC C + F Q ++L RH H + SG
Sbjct: 10 EKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSG 42
Score = 30.0 bits (66), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 254 HACQECGKTFATSSGLKQHTHIHSSVKP 281
+ C ECGK F +S L +H IH+ KP
Sbjct: 13 YKCNECGKVFTQNSHLVRHRGIHTGEKP 40
>pdb|2EL5|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 42
Score = 37.7 bits (86), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 20/36 (55%)
Query: 22 GSSSKTTKDRYACKYCGKVFPRSANLTRHLRTHTGE 57
GSS + ++ Y C CGK F R L H RTH GE
Sbjct: 1 GSSGSSGENPYECSECGKAFNRKDQLISHQRTHAGE 36
Score = 37.7 bits (86), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 20/36 (55%)
Query: 753 GSSSKTTKDRYACKYCGKVFPRSANLTRHLRTHTGE 788
GSS + ++ Y C CGK F R L H RTH GE
Sbjct: 1 GSSGSSGENPYECSECGKAFNRKDQLISHQRTHAGE 36
>pdb|2YTN|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
732- 764) Of Human Zinc Finger Protein 347
Length = 46
Score = 37.7 bits (86), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 29 KDRYACKYCGKVFPRSANLTRHLRTHTGEQP 59
K Y C CGKVF ++++L RH HTGE+P
Sbjct: 10 KKPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 37.7 bits (86), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 760 KDRYACKYCGKVFPRSANLTRHLRTHTGEQP 790
K Y C CGKVF ++++L RH HTGE+P
Sbjct: 10 KKPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 57 EQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 88
++PYKC C + F+ +S+L RH R IH EKP
Sbjct: 10 KKPYKCNECGKVFTQNSHLARH-RGIHTGEKP 40
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 788 EQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 819
++PYKC C + F+ +S+L RH R IH EKP
Sbjct: 10 KKPYKCNECGKVFTQNSHLARH-RGIHTGEKP 40
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 280 KPFRCEVCHKAYTQFSNLCRHKRMHAN 306
KP++C C K +TQ S+L RH+ +H
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIHTG 37
Score = 30.4 bits (67), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 256 CQECGKTFATSSGLKQHTHIHSSVKP 281
C ECGK F +S L +H IH+ KP
Sbjct: 15 CNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 30.0 bits (66), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 86 EKPFKCPLCDRCFGQQTNLDRHLKKHEADDGSG 118
+KP+KC C + F Q ++L RH H + SG
Sbjct: 10 KKPYKCNECGKVFTQNSHLARHRGIHTGEKPSG 42
Score = 30.0 bits (66), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 817 EKPFKCPLCDRCFGQQTNLDRHLKKHEADDGSG 849
+KP+KC C + F Q ++L RH H + SG
Sbjct: 10 KKPYKCNECGKVFTQNSHLARHRGIHTGEKPSG 42
>pdb|2YTI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
564- 596) Of Human Zinc Finger Protein 347
Length = 46
Score = 37.7 bits (86), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 20/28 (71%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQP 59
Y C CGKVF ++++L RH HTGE+P
Sbjct: 13 YKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 37.7 bits (86), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 20/28 (71%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQP 790
Y C CGKVF ++++L RH HTGE+P
Sbjct: 13 YKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 36.2 bits (82), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 57 EQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 88
E+PYKC C + F+ +S+L RH R IH EKP
Sbjct: 10 EKPYKCNECGKVFTQNSHLARH-RGIHTGEKP 40
Score = 36.2 bits (82), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 788 EQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 819
E+PYKC C + F+ +S+L RH R IH EKP
Sbjct: 10 EKPYKCNECGKVFTQNSHLARH-RGIHTGEKP 40
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 280 KPFRCEVCHKAYTQFSNLCRHKRMHAN 306
KP++C C K +TQ S+L RH+ +H
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIHTG 37
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 86 EKPFKCPLCDRCFGQQTNLDRHLKKHEADDGSG 118
EKP+KC C + F Q ++L RH H + SG
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRGIHTGEKPSG 42
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 817 EKPFKCPLCDRCFGQQTNLDRHLKKHEADDGSG 849
EKP+KC C + F Q ++L RH H + SG
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRGIHTGEKPSG 42
Score = 30.8 bits (68), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 256 CQECGKTFATSSGLKQHTHIHSSVKP 281
C ECGK F +S L +H IH+ KP
Sbjct: 15 CNECGKVFTQNSHLARHRGIHTGEKP 40
>pdb|2YTQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
775- 807) Of Human Zinc Finger Protein 268
Length = 46
Score = 37.4 bits (85), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQP 59
Y C CGK F + L H+RTH+GE+P
Sbjct: 13 YGCSECGKAFSSKSYLIIHMRTHSGEKP 40
Score = 37.4 bits (85), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQP 790
Y C CGK F + L H+RTH+GE+P
Sbjct: 13 YGCSECGKAFSSKSYLIIHMRTHSGEKP 40
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 57 EQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 88
E+PY C C ++FS S L H+R H+ EKP
Sbjct: 10 EKPYGCSECGKAFSSKSYLIIHMRT-HSGEKP 40
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 788 EQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 819
E+PY C C ++FS S L H+R H+ EKP
Sbjct: 10 EKPYGCSECGKAFSSKSYLIIHMRT-HSGEKP 40
Score = 30.0 bits (66), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 254 HACQECGKTFATSSGLKQHTHIHSSVKP 281
+ C ECGK F++ S L H HS KP
Sbjct: 13 YGCSECGKAFSSKSYLIIHMRTHSGEKP 40
>pdb|2EPT|A Chain A, Solution Structure Of The First C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 41
Score = 37.4 bits (85), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 22/38 (57%)
Query: 22 GSSSKTTKDRYACKYCGKVFPRSANLTRHLRTHTGEQP 59
GSS + + Y C+ CGK F + +LT H R HTG P
Sbjct: 1 GSSGSSGQRVYECQECGKSFRQKGSLTLHERIHTGSGP 38
Score = 37.4 bits (85), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 22/38 (57%)
Query: 753 GSSSKTTKDRYACKYCGKVFPRSANLTRHLRTHTGEQP 790
GSS + + Y C+ CGK F + +LT H R HTG P
Sbjct: 1 GSSGSSGQRVYECQECGKSFRQKGSLTLHERIHTGSGP 38
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 250 GARQHACQECGKTFATSSGLKQHTHIHSSVKP 281
G R + CQECGK+F L H IH+ P
Sbjct: 7 GQRVYECQECGKSFRQKGSLTLHERIHTGSGP 38
>pdb|2YTS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
715- 747) Of Human Zinc Finger Protein 484
Length = 46
Score = 37.4 bits (85), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQP 59
Y C CGK F + ++L RH R HTGE+P
Sbjct: 13 YICNECGKSFIQKSHLNRHRRIHTGEKP 40
Score = 37.4 bits (85), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQP 790
Y C CGK F + ++L RH R HTGE+P
Sbjct: 13 YICNECGKSFIQKSHLNRHRRIHTGEKP 40
Score = 33.1 bits (74), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 57 EQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 88
E+PY C C +SF S+L RH R IH EKP
Sbjct: 10 EKPYICNECGKSFIQKSHLNRH-RRIHTGEKP 40
Score = 33.1 bits (74), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 788 EQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 819
E+PY C C +SF S+L RH R IH EKP
Sbjct: 10 EKPYICNECGKSFIQKSHLNRH-RRIHTGEKP 40
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 254 HACQECGKTFATSSGLKQHTHIHSSVKP 281
+ C ECGK+F S L +H IH+ KP
Sbjct: 13 YICNECGKSFIQKSHLNRHRRIHTGEKP 40
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 86 EKPFKCPLCDRCFGQQTNLDRHLKKHEADDGSG 118
EKP+ C C + F Q+++L+RH + H + SG
Sbjct: 10 EKPYICNECGKSFIQKSHLNRHRRIHTGEKPSG 42
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 817 EKPFKCPLCDRCFGQQTNLDRHLKKHEADDGSG 849
EKP+ C C + F Q+++L+RH + H + SG
Sbjct: 10 EKPYICNECGKSFIQKSHLNRHRRIHTGEKPSG 42
Score = 30.4 bits (67), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 280 KPFRCEVCHKAYTQFSNLCRHKRMHAN 306
KP+ C C K++ Q S+L RH+R+H
Sbjct: 11 KPYICNECGKSFIQKSHLNRHRRIHTG 37
>pdb|2EMH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
491- 523) Of Human Zinc Finger Protein 484
Length = 46
Score = 37.4 bits (85), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQP 59
Y C CGK F +NL +H + HTGE+P
Sbjct: 13 YICTVCGKAFTDRSNLIKHQKIHTGEKP 40
Score = 37.4 bits (85), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQP 790
Y C CGK F +NL +H + HTGE+P
Sbjct: 13 YICTVCGKAFTDRSNLIKHQKIHTGEKP 40
Score = 33.9 bits (76), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 280 KPFRCEVCHKAYTQFSNLCRHKRMHAN 306
+P+ C VC KA+T SNL +H+++H
Sbjct: 11 RPYICTVCGKAFTDRSNLIKHQKIHTG 37
Score = 33.1 bits (74), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 57 EQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 88
E+PY C C ++F+ SNL +H + IH EKP
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKH-QKIHTGEKP 40
Score = 33.1 bits (74), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 788 EQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 819
E+PY C C ++F+ SNL +H + IH EKP
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKH-QKIHTGEKP 40
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 86 EKPFKCPLCDRCFGQQTNLDRHLKKHEADDGSG 118
E+P+ C +C + F ++NL +H K H + SG
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSG 42
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 817 EKPFKCPLCDRCFGQQTNLDRHLKKHEADDGSG 849
E+P+ C +C + F ++NL +H K H + SG
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSG 42
>pdb|2M0F|A Chain A, Solution Structure Of Miz-1 Zinc Finger 7
Length = 29
Score = 37.0 bits (84), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 15/25 (60%), Positives = 18/25 (72%)
Query: 34 CKYCGKVFPRSANLTRHLRTHTGEQ 58
C+ CGK F S NL RHLR H+GE+
Sbjct: 5 CRECGKQFTTSGNLKRHLRIHSGEK 29
Score = 37.0 bits (84), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 15/25 (60%), Positives = 18/25 (72%)
Query: 765 CKYCGKVFPRSANLTRHLRTHTGEQ 789
C+ CGK F S NL RHLR H+GE+
Sbjct: 5 CRECGKQFTTSGNLKRHLRIHSGEK 29
Score = 34.7 bits (78), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 15/25 (60%), Positives = 17/25 (68%)
Query: 256 CQECGKTFATSSGLKQHTHIHSSVK 280
C+ECGK F TS LK+H IHS K
Sbjct: 5 CRECGKQFTTSGNLKRHLRIHSGEK 29
Score = 34.7 bits (78), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
Query: 59 PYKCKYCERSFSISSNLQRHVRNIHNKEK 87
P KC+ C + F+ S NL+RH+R IH+ EK
Sbjct: 2 PLKCRECGKQFTTSGNLKRHLR-IHSGEK 29
Score = 34.7 bits (78), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
Query: 790 PYKCKYCERSFSISSNLQRHVRNIHNKEK 818
P KC+ C + F+ S NL+RH+R IH+ EK
Sbjct: 2 PLKCRECGKQFTTSGNLKRHLR-IHSGEK 29
>pdb|2EM6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
199- 231) Of Human Zinc Finger Protein 224
Length = 46
Score = 37.0 bits (84), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQP 59
Y C CGK F +S++L H R HTGE+P
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTGEKP 40
Score = 37.0 bits (84), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQP 790
Y C CGK F +S++L H R HTGE+P
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTGEKP 40
Score = 34.3 bits (77), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 57 EQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 88
E+ YKC C + FS SS+LQ H R +H EKP
Sbjct: 10 EKCYKCDVCGKEFSQSSHLQTHQR-VHTGEKP 40
Score = 34.3 bits (77), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 788 EQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 819
E+ YKC C + FS SS+LQ H R +H EKP
Sbjct: 10 EKCYKCDVCGKEFSQSSHLQTHQR-VHTGEKP 40
>pdb|2EOZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
809- 841) Of Human Zinc Finger Protein 473
Length = 46
Score = 37.0 bits (84), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 18/26 (69%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGE 57
Y+C CGK F SA+L +HLR HT E
Sbjct: 13 YSCNVCGKAFVLSAHLNQHLRVHTQE 38
Score = 37.0 bits (84), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 18/26 (69%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGE 788
Y+C CGK F SA+L +HLR HT E
Sbjct: 13 YSCNVCGKAFVLSAHLNQHLRVHTQE 38
Score = 33.1 bits (74), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 22/30 (73%), Gaps = 1/30 (3%)
Query: 57 EQPYKCKYCERSFSISSNLQRHVRNIHNKE 86
E+PY C C ++F +S++L +H+R +H +E
Sbjct: 10 EKPYSCNVCGKAFVLSAHLNQHLR-VHTQE 38
Score = 33.1 bits (74), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 22/30 (73%), Gaps = 1/30 (3%)
Query: 788 EQPYKCKYCERSFSISSNLQRHVRNIHNKE 817
E+PY C C ++F +S++L +H+R +H +E
Sbjct: 10 EKPYSCNVCGKAFVLSAHLNQHLR-VHTQE 38
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 86 EKPFKCPLCDRCFGQQTNLDRHLKKHEADDGSG 118
EKP+ C +C + F +L++HL+ H + SG
Sbjct: 10 EKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSG 42
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 817 EKPFKCPLCDRCFGQQTNLDRHLKKHEADDGSG 849
EKP+ C +C + F +L++HL+ H + SG
Sbjct: 10 EKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSG 42
>pdb|2EMV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
859- 889) Of Human Zinc Finger Protein 268
Length = 44
Score = 37.0 bits (84), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 21/34 (61%)
Query: 24 SSKTTKDRYACKYCGKVFPRSANLTRHLRTHTGE 57
SS T + Y C CGK F R++ L H RTH+GE
Sbjct: 5 SSGTREKPYECSECGKAFIRNSQLIVHQRTHSGE 38
Score = 37.0 bits (84), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 21/34 (61%)
Query: 755 SSKTTKDRYACKYCGKVFPRSANLTRHLRTHTGE 788
SS T + Y C CGK F R++ L H RTH+GE
Sbjct: 5 SSGTREKPYECSECGKAFIRNSQLIVHQRTHSGE 38
>pdb|2EMM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
544- 576) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 36.6 bits (83), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 20/28 (71%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQP 59
+ C CGK F +SA+L +H R HTGE+P
Sbjct: 13 HKCNECGKSFIQSAHLIQHQRIHTGEKP 40
Score = 36.6 bits (83), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 20/28 (71%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQP 790
+ C CGK F +SA+L +H R HTGE+P
Sbjct: 13 HKCNECGKSFIQSAHLIQHQRIHTGEKP 40
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 19/30 (63%)
Query: 252 RQHACQECGKTFATSSGLKQHTHIHSSVKP 281
R H C ECGK+F S+ L QH IH+ KP
Sbjct: 11 RPHKCNECGKSFIQSAHLIQHQRIHTGEKP 40
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 57 EQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 88
E+P+KC C +SF S++L +H R IH EKP
Sbjct: 10 ERPHKCNECGKSFIQSAHLIQHQR-IHTGEKP 40
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 788 EQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 819
E+P+KC C +SF S++L +H R IH EKP
Sbjct: 10 ERPHKCNECGKSFIQSAHLIQHQR-IHTGEKP 40
>pdb|1SP2|A Chain A, Nmr Structure Of A Zinc Finger Domain From Transcription
Factor Sp1f2, Minimized Average Structure
pdb|1VA2|A Chain A, Solution Structure Of Transcription Factor Sp1 Dna
Binding Domain (Zinc Finger 2)
Length = 31
Score = 36.6 bits (83), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 16/23 (69%), Positives = 17/23 (73%)
Query: 36 YCGKVFPRSANLTRHLRTHTGEQ 58
YCGK F RS L RH RTHTGE+
Sbjct: 9 YCGKRFTRSDELQRHKRTHTGEK 31
Score = 36.6 bits (83), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 16/23 (69%), Positives = 17/23 (73%)
Query: 767 YCGKVFPRSANLTRHLRTHTGEQ 789
YCGK F RS L RH RTHTGE+
Sbjct: 9 YCGKRFTRSDELQRHKRTHTGEK 31
>pdb|2YTA|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 3 In
Zinc Finger Protein 32
Length = 41
Score = 36.6 bits (83), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 21/38 (55%)
Query: 22 GSSSKTTKDRYACKYCGKVFPRSANLTRHLRTHTGEQP 59
GSS + + Y CK CGK F + +L H R HTG P
Sbjct: 1 GSSGSSGEKPYQCKECGKSFSQRGSLAVHERLHTGSGP 38
Score = 36.6 bits (83), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 21/38 (55%)
Query: 753 GSSSKTTKDRYACKYCGKVFPRSANLTRHLRTHTGEQP 790
GSS + + Y CK CGK F + +L H R HTG P
Sbjct: 1 GSSGSSGEKPYQCKECGKSFSQRGSLAVHERLHTGSGP 38
Score = 32.7 bits (73), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 55 TGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 88
+GE+PY+CK C +SFS +L H R +H P
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVHER-LHTGSGP 38
Score = 32.7 bits (73), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 786 TGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 819
+GE+PY+CK C +SFS +L H R +H P
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVHER-LHTGSGP 38
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 20/30 (66%)
Query: 277 SSVKPFRCEVCHKAYTQFSNLCRHKRMHAN 306
S KP++C+ C K+++Q +L H+R+H
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVHERLHTG 35
>pdb|2YTJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
771- 803) Of Human Zinc Finger Protein 484
Length = 46
Score = 36.2 bits (82), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
Query: 57 EQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 88
E+PY C C ++F+I SNL +H + IH K+KP
Sbjct: 10 EKPYICAECGKAFTIRSNLIKH-QKIHTKQKP 40
Score = 36.2 bits (82), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
Query: 788 EQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 819
E+PY C C ++F+I SNL +H + IH K+KP
Sbjct: 10 EKPYICAECGKAFTIRSNLIKH-QKIHTKQKP 40
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQP 59
Y C CGK F +NL +H + HT ++P
Sbjct: 13 YICAECGKAFTIRSNLIKHQKIHTKQKP 40
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQP 790
Y C CGK F +NL +H + HT ++P
Sbjct: 13 YICAECGKAFTIRSNLIKHQKIHTKQKP 40
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 280 KPFRCEVCHKAYTQFSNLCRHKRMH 304
KP+ C C KA+T SNL +H+++H
Sbjct: 11 KPYICAECGKAFTIRSNLIKHQKIH 35
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 254 HACQECGKTFATSSGLKQHTHIHSSVKP 281
+ C ECGK F S L +H IH+ KP
Sbjct: 13 YICAECGKAFTIRSNLIKHQKIHTKQKP 40
>pdb|2EMC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
641- 673) Of Human Zinc Finger Protein 473
Length = 46
Score = 36.2 bits (82), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 21/36 (58%)
Query: 24 SSKTTKDRYACKYCGKVFPRSANLTRHLRTHTGEQP 59
SS T + + C CGK F SA+L++H H GE P
Sbjct: 5 SSGTKEHPFKCNECGKTFSHSAHLSKHQLIHAGENP 40
Score = 36.2 bits (82), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 21/36 (58%)
Query: 755 SSKTTKDRYACKYCGKVFPRSANLTRHLRTHTGEQP 790
SS T + + C CGK F SA+L++H H GE P
Sbjct: 5 SSGTKEHPFKCNECGKTFSHSAHLSKHQLIHAGENP 40
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 55 TGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 88
T E P+KC C ++FS S++L +H + IH E P
Sbjct: 8 TKEHPFKCNECGKTFSHSAHLSKH-QLIHAGENP 40
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 786 TGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 819
T E P+KC C ++FS S++L +H + IH E P
Sbjct: 8 TKEHPFKCNECGKTFSHSAHLSKH-QLIHAGENP 40
Score = 30.4 bits (67), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Query: 250 GARQH--ACQECGKTFATSSGLKQHTHIHSSVKP 281
G ++H C ECGKTF+ S+ L +H IH+ P
Sbjct: 7 GTKEHPFKCNECGKTFSHSAHLSKHQLIHAGENP 40
Score = 30.0 bits (66), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 8/41 (19%)
Query: 266 SSGLKQHTHIHSSVKPFRCEVCHKAYTQFSNLCRHKRMHAN 306
SSG K+H PF+C C K ++ ++L +H+ +HA
Sbjct: 5 SSGTKEH--------PFKCNECGKTFSHSAHLSKHQLIHAG 37
Score = 30.0 bits (66), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 85 KEKPFKCPLCDRCFGQQTNLDRHLKKHEADDGSG 118
KE PFKC C + F +L +H H ++ SG
Sbjct: 9 KEHPFKCNECGKTFSHSAHLSKHQLIHAGENPSG 42
Score = 30.0 bits (66), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 816 KEKPFKCPLCDRCFGQQTNLDRHLKKHEADDGSG 849
KE PFKC C + F +L +H H ++ SG
Sbjct: 9 KEHPFKCNECGKTFSHSAHLSKHQLIHAGENPSG 42
>pdb|2EMY|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
551- 583) Of Human Zinc Finger Protein 268
Length = 46
Score = 36.2 bits (82), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 16/28 (57%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQP 59
Y C CGK F R L H RTH GE+P
Sbjct: 13 YECHECGKAFSRKYQLISHQRTHAGEKP 40
Score = 36.2 bits (82), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 16/28 (57%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQP 790
Y C CGK F R L H RTH GE+P
Sbjct: 13 YECHECGKAFSRKYQLISHQRTHAGEKP 40
>pdb|2EPS|A Chain A, Solution Structure Of The 4th Zinc Finger Domain Of Zinc
Finger Protein 278
Length = 54
Score = 36.2 bits (82), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 58 QPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 91
+PY C+ C + FS +L H++ +H E+P KC
Sbjct: 11 KPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKC 44
Score = 36.2 bits (82), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 789 QPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 822
+PY C+ C + FS +L H++ +H E+P KC
Sbjct: 11 KPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKC 44
Score = 35.0 bits (79), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 222 GRKFPCENCTKVFSDPSNLQRHIRTHHVGARQHACQ 257
G+ + C++C K FS P +L HI+ H R H CQ
Sbjct: 10 GKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQ 45
Score = 34.3 bits (77), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 32 YACKYCGKVFPRSANLTRHLR-THTGEQPYKCK 63
Y C+ CGK F R +L H++ HT E+P+KC+
Sbjct: 13 YICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQ 45
Score = 34.3 bits (77), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 763 YACKYCGKVFPRSANLTRHLR-THTGEQPYKCK 794
Y C+ CGK F R +L H++ HT E+P+KC+
Sbjct: 13 YICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQ 45
>pdb|2EQ4|A Chain A, Solution Structure Of The 11th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 224
Length = 46
Score = 36.2 bits (82), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQP 59
Y CK CGK F R+ L +H R H+GE+P
Sbjct: 13 YNCKECGKSFSRAPCLLKHERLHSGEKP 40
Score = 36.2 bits (82), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQP 790
Y CK CGK F R+ L +H R H+GE+P
Sbjct: 13 YNCKECGKSFSRAPCLLKHERLHSGEKP 40
Score = 30.4 bits (67), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 256 CQECGKTFATSSGLKQHTHIHSSVKP 281
C+ECGK+F+ + L +H +HS KP
Sbjct: 15 CKECGKSFSRAPCLLKHERLHSGEKP 40
>pdb|2EMG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
463- 495) Of Human Zinc Finger Protein 484
Length = 46
Score = 36.2 bits (82), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQP 59
+ C CGKVF NL H + HTGE+P
Sbjct: 13 FICSECGKVFTHKTNLIIHQKIHTGERP 40
Score = 36.2 bits (82), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQP 790
+ C CGKVF NL H + HTGE+P
Sbjct: 13 FICSECGKVFTHKTNLIIHQKIHTGERP 40
Score = 30.0 bits (66), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 86 EKPFKCPLCDRCFGQQTNLDRHLKKHEADDGSG 118
E PF C C + F +TNL H K H + SG
Sbjct: 10 ENPFICSECGKVFTHKTNLIIHQKIHTGERPSG 42
Score = 30.0 bits (66), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 817 EKPFKCPLCDRCFGQQTNLDRHLKKHEADDGSG 849
E PF C C + F +TNL H K H + SG
Sbjct: 10 ENPFICSECGKVFTHKTNLIIHQKIHTGERPSG 42
>pdb|2EON|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
397- 429) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 36.2 bits (82), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 25/32 (78%), Gaps = 1/32 (3%)
Query: 57 EQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 88
E+PYKC+ C ++F +SS+L +H ++H+ E+P
Sbjct: 10 EKPYKCQVCGKAFRVSSHLVQH-HSVHSGERP 40
Score = 36.2 bits (82), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 25/32 (78%), Gaps = 1/32 (3%)
Query: 788 EQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 819
E+PYKC+ C ++F +SS+L +H ++H+ E+P
Sbjct: 10 EKPYKCQVCGKAFRVSSHLVQH-HSVHSGERP 40
Score = 34.3 bits (77), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQP 59
Y C+ CGK F S++L +H H+GE+P
Sbjct: 13 YKCQVCGKAFRVSSHLVQHHSVHSGERP 40
Score = 34.3 bits (77), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQP 790
Y C+ CGK F S++L +H H+GE+P
Sbjct: 13 YKCQVCGKAFRVSSHLVQHHSVHSGERP 40
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 16/26 (61%)
Query: 256 CQECGKTFATSSGLKQHTHIHSSVKP 281
CQ CGK F SS L QH +HS +P
Sbjct: 15 CQVCGKAFRVSSHLVQHHSVHSGERP 40
Score = 30.4 bits (67), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 280 KPFRCEVCHKAYTQFSNLCRHKRMHANCR 308
KP++C+VC KA+ S+L +H +H+ R
Sbjct: 11 KPYKCQVCGKAFRVSSHLVQHHSVHSGER 39
>pdb|2EQW|A Chain A, Solution Structure Of The 6th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 484
Length = 42
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 20/36 (55%)
Query: 22 GSSSKTTKDRYACKYCGKVFPRSANLTRHLRTHTGE 57
GSS + + Y C CGK F R ++ H R HTGE
Sbjct: 1 GSSGSSGEKPYVCTECGKAFIRKSHFITHERIHTGE 36
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 20/36 (55%)
Query: 753 GSSSKTTKDRYACKYCGKVFPRSANLTRHLRTHTGE 788
GSS + + Y C CGK F R ++ H R HTGE
Sbjct: 1 GSSGSSGEKPYVCTECGKAFIRKSHFITHERIHTGE 36
>pdb|2EOL|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
581- 609) Of Human Zinc Finger Protein 268
Length = 42
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 20/36 (55%)
Query: 22 GSSSKTTKDRYACKYCGKVFPRSANLTRHLRTHTGE 57
GSS + + Y C CGK F + L H RTHTGE
Sbjct: 1 GSSGSSGEKPYECTDCGKAFGLKSQLIIHQRTHTGE 36
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 20/36 (55%)
Query: 753 GSSSKTTKDRYACKYCGKVFPRSANLTRHLRTHTGE 788
GSS + + Y C CGK F + L H RTHTGE
Sbjct: 1 GSSGSSGEKPYECTDCGKAFGLKSQLIIHQRTHTGE 36
Score = 30.4 bits (67), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 84 NKEKPFKCPLCDRCFGQQTNLDRHLKKHEADDG 116
+ EKP++C C + FG ++ L H + H + G
Sbjct: 6 SGEKPYECTDCGKAFGLKSQLIIHQRTHTGESG 38
Score = 30.4 bits (67), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 815 NKEKPFKCPLCDRCFGQQTNLDRHLKKHEADDG 847
+ EKP++C C + FG ++ L H + H + G
Sbjct: 6 SGEKPYECTDCGKAFGLKSQLIIHQRTHTGESG 38
Score = 30.0 bits (66), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 55 TGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 88
+GE+PY+C C ++F + S L H R + P
Sbjct: 6 SGEKPYECTDCGKAFGLKSQLIIHQRTHTGESGP 39
Score = 30.0 bits (66), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 786 TGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 819
+GE+PY+C C ++F + S L H R + P
Sbjct: 6 SGEKPYECTDCGKAFGLKSQLIIHQRTHTGESGP 39
>pdb|2EN9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
415- 447) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 29 KDRYACKYCGKVFPRSANLTRHLRTHTGEQP 59
K + C C K F +S++LT H R HTGE+P
Sbjct: 10 KKLFKCNECKKTFTQSSSLTVHQRIHTGEKP 40
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 760 KDRYACKYCGKVFPRSANLTRHLRTHTGEQP 790
K + C C K F +S++LT H R HTGE+P
Sbjct: 10 KKLFKCNECKKTFTQSSSLTVHQRIHTGEKP 40
Score = 30.0 bits (66), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 15/26 (57%)
Query: 256 CQECGKTFATSSGLKQHTHIHSSVKP 281
C EC KTF SS L H IH+ KP
Sbjct: 15 CNECKKTFTQSSSLTVHQRIHTGEKP 40
Score = 30.0 bits (66), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 280 KPFRCEVCHKAYTQFSNLCRHKRMHAN 306
K F+C C K +TQ S+L H+R+H
Sbjct: 11 KLFKCNECKKTFTQSSSLTVHQRIHTG 37
Score = 29.6 bits (65), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Query: 60 YKCKYCERSFSISSNLQRHVRNIHNKEKP 88
+KC C+++F+ SS+L H R IH EKP
Sbjct: 13 FKCNECKKTFTQSSSLTVHQR-IHTGEKP 40
Score = 29.6 bits (65), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Query: 791 YKCKYCERSFSISSNLQRHVRNIHNKEKP 819
+KC C+++F+ SS+L H R IH EKP
Sbjct: 13 FKCNECKKTFTQSSSLTVHQR-IHTGEKP 40
>pdb|2EOR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
255- 287) Of Human Zinc Finger Protein 224
Length = 46
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQP 59
Y C+ CGK F + L H R HTGE+P
Sbjct: 13 YNCEECGKAFIHDSQLQEHQRIHTGEKP 40
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQP 790
Y C+ CGK F + L H R HTGE+P
Sbjct: 13 YNCEECGKAFIHDSQLQEHQRIHTGEKP 40
Score = 33.1 bits (74), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 57 EQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 88
E+PY C+ C ++F S LQ H R IH EKP
Sbjct: 10 EKPYNCEECGKAFIHDSQLQEHQR-IHTGEKP 40
Score = 33.1 bits (74), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 788 EQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 819
E+PY C+ C ++F S LQ H R IH EKP
Sbjct: 10 EKPYNCEECGKAFIHDSQLQEHQR-IHTGEKP 40
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 256 CQECGKTFATSSGLKQHTHIHSSVKP 281
C+ECGK F S L++H IH+ KP
Sbjct: 15 CEECGKAFIHDSQLQEHQRIHTGEKP 40
Score = 30.4 bits (67), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 280 KPFRCEVCHKAYTQFSNLCRHKRMHAN 306
KP+ CE C KA+ S L H+R+H
Sbjct: 11 KPYNCEECGKAFIHDSQLQEHQRIHTG 37
>pdb|2EOE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
508- 540) Of Human Zinc Finger Protein 347
Length = 46
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQP 59
Y C CGKVF ++++L H R HTG +P
Sbjct: 13 YKCNECGKVFTQNSHLANHQRIHTGVKP 40
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQP 790
Y C CGKVF ++++L H R HTG +P
Sbjct: 13 YKCNECGKVFTQNSHLANHQRIHTGVKP 40
Score = 33.5 bits (75), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 16/26 (61%)
Query: 256 CQECGKTFATSSGLKQHTHIHSSVKP 281
C ECGK F +S L H IH+ VKP
Sbjct: 15 CNECGKVFTQNSHLANHQRIHTGVKP 40
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 280 KPFRCEVCHKAYTQFSNLCRHKRMHANCR 308
KP++C C K +TQ S+L H+R+H +
Sbjct: 11 KPYKCNECGKVFTQNSHLANHQRIHTGVK 39
Score = 30.4 bits (67), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 57 EQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 88
E+PYKC C + F+ +S+L H R IH KP
Sbjct: 10 EKPYKCNECGKVFTQNSHLANHQR-IHTGVKP 40
Score = 30.4 bits (67), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 788 EQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 819
E+PYKC C + F+ +S+L H R IH KP
Sbjct: 10 EKPYKCNECGKVFTQNSHLANHQR-IHTGVKP 40
>pdb|2EN0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
385- 413) Of Human Zinc Finger Protein 268
Length = 42
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 19/36 (52%)
Query: 22 GSSSKTTKDRYACKYCGKVFPRSANLTRHLRTHTGE 57
GSS + + Y C CGK F + L H R HTGE
Sbjct: 1 GSSGSSGQKPYVCNECGKAFGLKSQLIIHERIHTGE 36
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 19/36 (52%)
Query: 753 GSSSKTTKDRYACKYCGKVFPRSANLTRHLRTHTGE 788
GSS + + Y C CGK F + L H R HTGE
Sbjct: 1 GSSGSSGQKPYVCNECGKAFGLKSQLIIHERIHTGE 36
>pdb|2EMF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
379- 411) Of Human Zinc Finger Protein 484
Length = 46
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQP 59
+ C CGK F R + L+ H + HTGE+P
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTGEKP 40
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQP 790
+ C CGK F R + L+ H + HTGE+P
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTGEKP 40
Score = 29.3 bits (64), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 14/26 (53%)
Query: 256 CQECGKTFATSSGLKQHTHIHSSVKP 281
C ECGK F S L H IH+ KP
Sbjct: 15 CTECGKAFTRKSTLSMHQKIHTGEKP 40
>pdb|2EQ1|A Chain A, Solution Structure Of The 9th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 17/28 (60%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQP 59
Y C CGK F +NLT H HTGE+P
Sbjct: 13 YKCNECGKAFRAHSNLTTHQVIHTGEKP 40
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 17/28 (60%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQP 790
Y C CGK F +NLT H HTGE+P
Sbjct: 13 YKCNECGKAFRAHSNLTTHQVIHTGEKP 40
Score = 33.5 bits (75), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 57 EQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 88
E+PYKC C ++F SNL H + IH EKP
Sbjct: 10 EKPYKCNECGKAFRAHSNLTTH-QVIHTGEKP 40
Score = 33.5 bits (75), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 788 EQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 819
E+PYKC C ++F SNL H + IH EKP
Sbjct: 10 EKPYKCNECGKAFRAHSNLTTH-QVIHTGEKP 40
>pdb|2EP0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
528- 560) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 35.0 bits (79), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 57 EQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 88
E+PYKC C +SF S+L H R IH EKP
Sbjct: 10 EKPYKCDVCHKSFRYGSSLTVHQR-IHTGEKP 40
Score = 35.0 bits (79), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 788 EQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 819
E+PYKC C +SF S+L H R IH EKP
Sbjct: 10 EKPYKCDVCHKSFRYGSSLTVHQR-IHTGEKP 40
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 20/27 (74%)
Query: 280 KPFRCEVCHKAYTQFSNLCRHKRMHAN 306
KP++C+VCHK++ S+L H+R+H
Sbjct: 11 KPYKCDVCHKSFRYGSSLTVHQRIHTG 37
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQP 59
Y C C K F ++LT H R HTGE+P
Sbjct: 13 YKCDVCHKSFRYGSSLTVHQRIHTGEKP 40
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQP 790
Y C C K F ++LT H R HTGE+P
Sbjct: 13 YKCDVCHKSFRYGSSLTVHQRIHTGEKP 40
>pdb|2ENH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
556- 588) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 35.0 bits (79), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQP 59
Y C C K F A+LT+H R H+GE+P
Sbjct: 13 YECDVCRKAFSHHASLTQHQRVHSGEKP 40
Score = 35.0 bits (79), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQP 790
Y C C K F A+LT+H R H+GE+P
Sbjct: 13 YECDVCRKAFSHHASLTQHQRVHSGEKP 40
Score = 33.9 bits (76), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 21/27 (77%)
Query: 280 KPFRCEVCHKAYTQFSNLCRHKRMHAN 306
KP+ C+VC KA++ ++L +H+R+H+
Sbjct: 11 KPYECDVCRKAFSHHASLTQHQRVHSG 37
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
Query: 57 EQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 88
E+PY+C C ++FS ++L +H R +H+ EKP
Sbjct: 10 EKPYECDVCRKAFSHHASLTQHQR-VHSGEKP 40
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
Query: 788 EQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 819
E+PY+C C ++FS ++L +H R +H+ EKP
Sbjct: 10 EKPYECDVCRKAFSHHASLTQHQR-VHSGEKP 40
Score = 30.0 bits (66), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 86 EKPFKCPLCDRCFGQQTNLDRHLKKHEADDGSG 118
EKP++C +C + F +L +H + H + SG
Sbjct: 10 EKPYECDVCRKAFSHHASLTQHQRVHSGEKPSG 42
Score = 30.0 bits (66), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 817 EKPFKCPLCDRCFGQQTNLDRHLKKHEADDGSG 849
EKP++C +C + F +L +H + H + SG
Sbjct: 10 EKPYECDVCRKAFSHHASLTQHQRVHSGEKPSG 42
>pdb|2EM9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
367- 399) Of Human Zinc Finger Protein 224
Length = 46
Score = 35.0 bits (79), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQP 59
Y CK CGK F ++ L +H R H+GE+P
Sbjct: 13 YNCKECGKSFRWASCLLKHQRVHSGEKP 40
Score = 35.0 bits (79), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQP 790
Y CK CGK F ++ L +H R H+GE+P
Sbjct: 13 YNCKECGKSFRWASCLLKHQRVHSGEKP 40
Score = 34.3 bits (77), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 57 EQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 88
E+PY CK C +SF +S L +H R +H+ EKP
Sbjct: 10 EKPYNCKECGKSFRWASCLLKHQR-VHSGEKP 40
Score = 34.3 bits (77), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 788 EQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 819
E+PY CK C +SF +S L +H R +H+ EKP
Sbjct: 10 EKPYNCKECGKSFRWASCLLKHQR-VHSGEKP 40
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 256 CQECGKTFATSSGLKQHTHIHSSVKP 281
C+ECGK+F +S L +H +HS KP
Sbjct: 15 CKECGKSFRWASCLLKHQRVHSGEKP 40
>pdb|2YTB|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 5 In
Zinc Finger Protein 32
Length = 42
Score = 35.0 bits (79), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQP 59
Y C CGK F + +L H+R HTG P
Sbjct: 12 YRCDQCGKAFSQKGSLIVHIRVHTGSGP 39
Score = 35.0 bits (79), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQP 790
Y C CGK F + +L H+R HTG P
Sbjct: 12 YRCDQCGKAFSQKGSLIVHIRVHTGSGP 39
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 280 KPFRCEVCHKAYTQFSNLCRHKRMHAN 306
KP+RC+ C KA++Q +L H R+H
Sbjct: 10 KPYRCDQCGKAFSQKGSLIVHIRVHTG 36
Score = 29.6 bits (65), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 57 EQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 88
E+PY+C C ++FS +L H+R +H P
Sbjct: 9 EKPYRCDQCGKAFSQKGSLIVHIR-VHTGSGP 39
Score = 29.6 bits (65), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 788 EQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 819
E+PY+C C ++FS +L H+R +H P
Sbjct: 9 EKPYRCDQCGKAFSQKGSLIVHIR-VHTGSGP 39
>pdb|1X5W|A Chain A, Solution Structure Of The C2h2 Type Zinc-Binding Domain
Of Human Zinc Finger Protein 64, Isoforms 1 And 2
Length = 70
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 21/40 (52%)
Query: 45 ANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHN 84
A L H R H ++P+KC YC SNL +H++ H
Sbjct: 23 AALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHG 62
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 21/40 (52%)
Query: 776 ANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHN 815
A L H R H ++P+KC YC SNL +H++ H
Sbjct: 23 AALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHG 62
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 75 LQRHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKHEAD 114
L+ H R IH ++PFKC C Q +NL +H+KK D
Sbjct: 25 LRIHER-IHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGD 63
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 806 LQRHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKHEAD 845
L+ H R IH ++PFKC C Q +NL +H+KK D
Sbjct: 25 LRIHER-IHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGD 63
Score = 29.6 bits (65), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 267 SGLKQHTHIHSSVKPFRCEVCHKAYTQFSNLCRH-KRMHAN 306
+ L+ H IH + +PF+C C Q SNL +H K+ H +
Sbjct: 23 AALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGD 63
>pdb|2ENA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
311- 343) Of Human Zinc Finger Protein 224
Length = 46
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 55 TGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 88
T E+P++C C++SF S L H R IH EKP
Sbjct: 8 TAEKPFRCDTCDKSFRQRSALNSH-RMIHTGEKP 40
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 786 TGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 819
T E+P++C C++SF S L H R IH EKP
Sbjct: 8 TAEKPFRCDTCDKSFRQRSALNSH-RMIHTGEKP 40
Score = 33.1 bits (74), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 86 EKPFKCPLCDRCFGQQTNLDRHLKKHEADDGSG 118
EKPF+C CD+ F Q++ L+ H H + SG
Sbjct: 10 EKPFRCDTCDKSFRQRSALNSHRMIHTGEKPSG 42
Score = 33.1 bits (74), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 817 EKPFKCPLCDRCFGQQTNLDRHLKKHEADDGSG 849
EKPF+C CD+ F Q++ L+ H H + SG
Sbjct: 10 EKPFRCDTCDKSFRQRSALNSHRMIHTGEKPSG 42
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 280 KPFRCEVCHKAYTQFSNLCRHKRMHAN 306
KPFRC+ C K++ Q S L H+ +H
Sbjct: 11 KPFRCDTCDKSFRQRSALNSHRMIHTG 37
>pdb|2EMZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
628- 660) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 86 EKPFKCPLCDRCFGQQTNLDRHLKKHEADDGSG 118
E+PFKC C + FG++++L HL+ H + SG
Sbjct: 10 ERPFKCNECGKGFGRRSHLAGHLRLHSREKSSG 42
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 817 EKPFKCPLCDRCFGQQTNLDRHLKKHEADDGSG 849
E+PFKC C + FG++++L HL+ H + SG
Sbjct: 10 ERPFKCNECGKGFGRRSHLAGHLRLHSREKSSG 42
Score = 30.8 bits (68), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Query: 57 EQPYKCKYCERSFSISSNLQRHVRNIHNKEK 87
E+P+KC C + F S+L H+R +H++EK
Sbjct: 10 ERPFKCNECGKGFGRRSHLAGHLR-LHSREK 39
Score = 30.8 bits (68), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Query: 788 EQPYKCKYCERSFSISSNLQRHVRNIHNKEK 818
E+P+KC C + F S+L H+R +H++EK
Sbjct: 10 ERPFKCNECGKGFGRRSHLAGHLR-LHSREK 39
Score = 30.0 bits (66), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQ 58
+ C CGK F R ++L HLR H+ E+
Sbjct: 13 FKCNECGKGFGRRSHLAGHLRLHSREK 39
Score = 30.0 bits (66), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQ 789
+ C CGK F R ++L HLR H+ E+
Sbjct: 13 FKCNECGKGFGRRSHLAGHLRLHSREK 39
>pdb|2EOM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
341- 373) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 34.3 bits (77), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQP 59
+ C CGK F +++N +H R HTGE+P
Sbjct: 13 HRCSDCGKFFLQASNFIQHRRIHTGEKP 40
Score = 34.3 bits (77), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQP 790
+ C CGK F +++N +H R HTGE+P
Sbjct: 13 HRCSDCGKFFLQASNFIQHRRIHTGEKP 40
Score = 32.7 bits (73), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 252 RQHACQECGKTFATSSGLKQHTHIHSSVKP 281
R H C +CGK F +S QH IH+ KP
Sbjct: 11 RGHRCSDCGKFFLQASNFIQHRRIHTGEKP 40
>pdb|1XRZ|A Chain A, Nmr Structure Of A Zinc Finger With Cyclohexanylalanine
Substituted For The Central Aromatic Residue
Length = 30
Score = 34.3 bits (77), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 22/30 (73%)
Query: 58 QPYKCKYCERSFSISSNLQRHVRNIHNKEK 87
+ Y+C+YCE + SSNL+ H++ H+KEK
Sbjct: 1 KTYQCQYCEXRSADSSNLKTHIKTKHSKEK 30
Score = 34.3 bits (77), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 22/30 (73%)
Query: 789 QPYKCKYCERSFSISSNLQRHVRNIHNKEK 818
+ Y+C+YCE + SSNL+ H++ H+KEK
Sbjct: 1 KTYQCQYCEXRSADSSNLKTHIKTKHSKEK 30
>pdb|2EP3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
631- 663) Of Human Zinc Finger Protein 484
Length = 46
Score = 34.3 bits (77), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQP 59
Y C CGK F +NL H + HTGE+P
Sbjct: 13 YRCAECGKAFTDRSNLFTHQKIHTGEKP 40
Score = 34.3 bits (77), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQP 790
Y C CGK F +NL H + HTGE+P
Sbjct: 13 YRCAECGKAFTDRSNLFTHQKIHTGEKP 40
Score = 33.1 bits (74), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 280 KPFRCEVCHKAYTQFSNLCRHKRMHAN 306
KP+RC C KA+T SNL H+++H
Sbjct: 11 KPYRCAECGKAFTDRSNLFTHQKIHTG 37
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 57 EQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 88
E+PY+C C ++F+ SNL H + IH EKP
Sbjct: 10 EKPYRCAECGKAFTDRSNLFTH-QKIHTGEKP 40
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 788 EQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 819
E+PY+C C ++F+ SNL H + IH EKP
Sbjct: 10 EKPYRCAECGKAFTDRSNLFTH-QKIHTGEKP 40
Score = 30.0 bits (66), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 86 EKPFKCPLCDRCFGQQTNLDRHLKKHEADDGSG 118
EKP++C C + F ++NL H K H + SG
Sbjct: 10 EKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSG 42
Score = 30.0 bits (66), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 817 EKPFKCPLCDRCFGQQTNLDRHLKKHEADDGSG 849
EKP++C C + F ++NL H K H + SG
Sbjct: 10 EKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSG 42
Score = 29.3 bits (64), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 14/26 (53%)
Query: 256 CQECGKTFATSSGLKQHTHIHSSVKP 281
C ECGK F S L H IH+ KP
Sbjct: 15 CAECGKAFTDRSNLFTHQKIHTGEKP 40
>pdb|2EMW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
301- 331) Of Human Zinc Finger Protein 268
Length = 44
Score = 34.3 bits (77), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 20/37 (54%)
Query: 22 GSSSKTTKDRYACKYCGKVFPRSANLTRHLRTHTGEQ 58
GSS + + Y C CGK F + L H R HTGE+
Sbjct: 1 GSSGSSGEKPYGCNECGKDFSSKSYLIVHQRIHTGEK 37
Score = 34.3 bits (77), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 20/37 (54%)
Query: 753 GSSSKTTKDRYACKYCGKVFPRSANLTRHLRTHTGEQ 789
GSS + + Y C CGK F + L H R HTGE+
Sbjct: 1 GSSGSSGEKPYGCNECGKDFSSKSYLIVHQRIHTGEK 37
Score = 30.8 bits (68), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 55 TGEQPYKCKYCERSFSISSNLQRHVRNIHNKEK 87
+GE+PY C C + FS S L H R IH EK
Sbjct: 6 SGEKPYGCNECGKDFSSKSYLIVHQR-IHTGEK 37
Score = 30.8 bits (68), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 786 TGEQPYKCKYCERSFSISSNLQRHVRNIHNKEK 818
+GE+PY C C + FS S L H R IH EK
Sbjct: 6 SGEKPYGCNECGKDFSSKSYLIVHQR-IHTGEK 37
>pdb|2YTG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
369- 401) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 33.9 bits (76), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQP 59
+ C CGK + + +LT+H R HTGE+P
Sbjct: 13 FKCGECGKSYNQRVHLTQHQRVHTGEKP 40
Score = 33.9 bits (76), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQP 790
+ C CGK + + +LT+H R HTGE+P
Sbjct: 13 FKCGECGKSYNQRVHLTQHQRVHTGEKP 40
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 86 EKPFKCPLCDRCFGQQTNLDRHLKKHEADDGSG 118
EKPFKC C + + Q+ +L +H + H + SG
Sbjct: 10 EKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSG 42
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 817 EKPFKCPLCDRCFGQQTNLDRHLKKHEADDGSG 849
EKPFKC C + + Q+ +L +H + H + SG
Sbjct: 10 EKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSG 42
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 280 KPFRCEVCHKAYTQFSNLCRHKRMHAN 306
KPF+C C K+Y Q +L +H+R+H
Sbjct: 11 KPFKCGECGKSYNQRVHLTQHQRVHTG 37
>pdb|2ELS|A Chain A, Solution Structure Of The 2nd C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 33.9 bits (76), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 23 SSSKTTKDRYACKYCGKVFPRSANLTRHLRTHTGEQ 58
SS ++ + C+YC KVF +L HLR HT E+
Sbjct: 1 GSSGSSGKIFTCEYCNKVFKFKHSLQAHLRIHTNEK 36
Score = 33.9 bits (76), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 754 SSSKTTKDRYACKYCGKVFPRSANLTRHLRTHTGEQ 789
SS ++ + C+YC KVF +L HLR HT E+
Sbjct: 1 GSSGSSGKIFTCEYCNKVFKFKHSLQAHLRIHTNEK 36
Score = 33.1 bits (74), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 222 GRKFPCENCTKVFSDPSNLQRHIRTH 247
G+ F CE C KVF +LQ H+R H
Sbjct: 7 GKIFTCEYCNKVFKFKHSLQAHLRIH 32
>pdb|2EOQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
283- 315) Of Human Zinc Finger Protein 224
Length = 46
Score = 33.9 bits (76), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 86 EKPFKCPLCDRCFGQQTNLDRHLKKHEADDGSG 118
EKPFKC +C + F ++ L+RH H A+ SG
Sbjct: 10 EKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSG 42
Score = 33.9 bits (76), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 817 EKPFKCPLCDRCFGQQTNLDRHLKKHEADDGSG 849
EKPFKC +C + F ++ L+RH H A+ SG
Sbjct: 10 EKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSG 42
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 57 EQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 88
E+P+KC C +SF S L RH +H EKP
Sbjct: 10 EKPFKCDICGKSFCGRSRLNRHSM-VHTAEKP 40
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 788 EQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 819
E+P+KC C +SF S L RH +H EKP
Sbjct: 10 EKPFKCDICGKSFCGRSRLNRHSM-VHTAEKP 40
Score = 29.6 bits (65), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQP 59
+ C CGK F + L RH HT E+P
Sbjct: 13 FKCDICGKSFCGRSRLNRHSMVHTAEKP 40
Score = 29.6 bits (65), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQP 790
+ C CGK F + L RH HT E+P
Sbjct: 13 FKCDICGKSFCGRSRLNRHSMVHTAEKP 40
Score = 29.6 bits (65), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 280 KPFRCEVCHKAYTQFSNLCRHKRMH 304
KPF+C++C K++ S L RH +H
Sbjct: 11 KPFKCDICGKSFCGRSRLNRHSMVH 35
>pdb|2LVR|A Chain A, Solution Structure Of Miz-1 Zinc Finger 8
Length = 30
Score = 33.9 bits (76), Expect = 0.44, Method: Composition-based stats.
Identities = 16/30 (53%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 58 QPYKCKYCERSFSISSNLQRHVRNIHNKEK 87
+PY C +C+R F+ LQRHVR IH EK
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVR-IHTGEK 30
Score = 33.9 bits (76), Expect = 0.44, Method: Composition-based stats.
Identities = 16/30 (53%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 789 QPYKCKYCERSFSISSNLQRHVRNIHNKEK 818
+PY C +C+R F+ LQRHVR IH EK
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVR-IHTGEK 30
Score = 31.6 bits (70), Expect = 2.0, Method: Composition-based stats.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 223 RKFPCENCTKVFSDPSNLQRHIRTH 247
+ + C +C + F+DP LQRH+R H
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIH 26
Score = 30.4 bits (67), Expect = 4.6, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQ 58
Y C +C + F L RH+R HTGE+
Sbjct: 4 YVCIHCQRQFADPGALQRHVRIHTGEK 30
Score = 30.4 bits (67), Expect = 4.6, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQ 789
Y C +C + F L RH+R HTGE+
Sbjct: 4 YVCIHCQRQFADPGALQRHVRIHTGEK 30
>pdb|2YTF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
607- 639) Of Human Zinc Finger Protein 268
Length = 46
Score = 33.9 bits (76), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQP 59
+ C C K F +NL H RTHTGE+P
Sbjct: 13 FECSECQKAFNTKSNLIVHQRTHTGEKP 40
Score = 33.9 bits (76), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQP 790
+ C C K F +NL H RTHTGE+P
Sbjct: 13 FECSECQKAFNTKSNLIVHQRTHTGEKP 40
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 57 EQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 88
E+P++C C+++F+ SNL H R H EKP
Sbjct: 10 EKPFECSECQKAFNTKSNLIVHQRT-HTGEKP 40
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 788 EQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 819
E+P++C C+++F+ SNL H R H EKP
Sbjct: 10 EKPFECSECQKAFNTKSNLIVHQRT-HTGEKP 40
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 280 KPFRCEVCHKAYTQFSNLCRHKRMHAN 306
KPF C C KA+ SNL H+R H
Sbjct: 11 KPFECSECQKAFNTKSNLIVHQRTHTG 37
Score = 31.2 bits (69), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 86 EKPFKCPLCDRCFGQQTNLDRHLKKHEADDGSG 118
EKPF+C C + F ++NL H + H + SG
Sbjct: 10 EKPFECSECQKAFNTKSNLIVHQRTHTGEKPSG 42
Score = 31.2 bits (69), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 817 EKPFKCPLCDRCFGQQTNLDRHLKKHEADDGSG 849
EKPF+C C + F ++NL H + H + SG
Sbjct: 10 EKPFECSECQKAFNTKSNLIVHQRTHTGEKPSG 42
>pdb|2EN4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
284- 316) Of Human Zinc Finger Protein 347
Length = 46
Score = 33.9 bits (76), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 23 SSSKTTKDR-YACKYCGKVFPRSANLTRHLRTHTGEQ 58
S S TK++ Y C CGK F +NLT H HTGE+
Sbjct: 3 SGSSGTKEKPYKCYECGKAFRTRSNLTTHQVIHTGEK 39
Score = 33.9 bits (76), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 754 SSSKTTKDR-YACKYCGKVFPRSANLTRHLRTHTGEQ 789
S S TK++ Y C CGK F +NLT H HTGE+
Sbjct: 3 SGSSGTKEKPYKCYECGKAFRTRSNLTTHQVIHTGEK 39
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 55 TGEQPYKCKYCERSFSISSNLQRHVRNIHNKEK 87
T E+PYKC C ++F SNL H + IH EK
Sbjct: 8 TKEKPYKCYECGKAFRTRSNLTTH-QVIHTGEK 39
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 786 TGEQPYKCKYCERSFSISSNLQRHVRNIHNKEK 818
T E+PYKC C ++F SNL H + IH EK
Sbjct: 8 TKEKPYKCYECGKAFRTRSNLTTH-QVIHTGEK 39
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 85 KEKPFKCPLCDRCFGQQTNLDRHLKKHEADDGSG 118
KEKP+KC C + F ++NL H H + SG
Sbjct: 9 KEKPYKCYECGKAFRTRSNLTTHQVIHTGEKRSG 42
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 816 KEKPFKCPLCDRCFGQQTNLDRHLKKHEADDGSG 849
KEKP+KC C + F ++NL H H + SG
Sbjct: 9 KEKPYKCYECGKAFRTRSNLTTHQVIHTGEKRSG 42
>pdb|1KLS|A Chain A, Nmr Structure Of The Zfy-6t[y10l] Zinc Finger
Length = 30
Score = 33.9 bits (76), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 22/30 (73%)
Query: 58 QPYKCKYCERSFSISSNLQRHVRNIHNKEK 87
+ Y+C+YCE + SSNL+ H++ H+KEK
Sbjct: 1 KTYQCQYCELRSADSSNLKTHIKTKHSKEK 30
Score = 33.9 bits (76), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 22/30 (73%)
Query: 789 QPYKCKYCERSFSISSNLQRHVRNIHNKEK 818
+ Y+C+YCE + SSNL+ H++ H+KEK
Sbjct: 1 KTYQCQYCELRSADSSNLKTHIKTKHSKEK 30
>pdb|2EM4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
724- 756) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 33.9 bits (76), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQP 59
Y C CGK F ++L H R+HTGE+P
Sbjct: 13 YECIECGKAFKTKSSLICHRRSHTGEKP 40
Score = 33.9 bits (76), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQP 790
Y C CGK F ++L H R+HTGE+P
Sbjct: 13 YECIECGKAFKTKSSLICHRRSHTGEKP 40
>pdb|2YTH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
479- 511) Of Human Zinc Finger Protein 224
Length = 46
Score = 33.9 bits (76), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 20/28 (71%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQP 59
+ C+ CGK F ++++L H R HTGE+P
Sbjct: 13 FQCEECGKRFTQNSHLHSHQRVHTGEKP 40
Score = 33.9 bits (76), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 20/28 (71%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQP 790
+ C+ CGK F ++++L H R HTGE+P
Sbjct: 13 FQCEECGKRFTQNSHLHSHQRVHTGEKP 40
Score = 32.7 bits (73), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 280 KPFRCEVCHKAYTQFSNLCRHKRMHAN 306
KPF+CE C K +TQ S+L H+R+H
Sbjct: 11 KPFQCEECGKRFTQNSHLHSHQRVHTG 37
Score = 30.0 bits (66), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 57 EQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 88
E+P++C+ C + F+ +S+L H R +H EKP
Sbjct: 10 EKPFQCEECGKRFTQNSHLHSHQR-VHTGEKP 40
Score = 30.0 bits (66), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 788 EQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 819
E+P++C+ C + F+ +S+L H R +H EKP
Sbjct: 10 EKPFQCEECGKRFTQNSHLHSHQR-VHTGEKP 40
Score = 29.6 bits (65), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 256 CQECGKTFATSSGLKQHTHIHSSVKP 281
C+ECGK F +S L H +H+ KP
Sbjct: 15 CEECGKRFTQNSHLHSHQRVHTGEKP 40
>pdb|2EMP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
536- 568) Of Human Zinc Finger Protein 347
Length = 46
Score = 33.9 bits (76), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQP 59
Y C CGK F ++LT H HTGE+P
Sbjct: 13 YMCNECGKAFSVYSSLTTHQVIHTGEKP 40
Score = 33.9 bits (76), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQP 790
Y C CGK F ++LT H HTGE+P
Sbjct: 13 YMCNECGKAFSVYSSLTTHQVIHTGEKP 40
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 58 QPYKCKYCERSFSISSNLQRHVRNIHNKEKP 88
+PY C C ++FS+ S+L H + IH EKP
Sbjct: 11 KPYMCNECGKAFSVYSSLTTH-QVIHTGEKP 40
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 789 QPYKCKYCERSFSISSNLQRHVRNIHNKEKP 819
+PY C C ++FS+ S+L H + IH EKP
Sbjct: 11 KPYMCNECGKAFSVYSSLTTH-QVIHTGEKP 40
Score = 31.2 bits (69), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 251 ARQHACQECGKTFATSSGLKQHTHIHSSVKP 281
+ + C ECGK F+ S L H IH+ KP
Sbjct: 10 VKPYMCNECGKAFSVYSSLTTHQVIHTGEKP 40
Score = 30.8 bits (68), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 279 VKPFRCEVCHKAYTQFSNLCRHKRMHAN 306
VKP+ C C KA++ +S+L H+ +H
Sbjct: 10 VKPYMCNECGKAFSVYSSLTTHQVIHTG 37
>pdb|2EMI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
547- 579) Of Human Zinc Finger Protein 484
Length = 46
Score = 33.9 bits (76), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQP 59
Y C CGK F + + L+ H R H GE+P
Sbjct: 13 YECSECGKAFIQKSTLSMHQRIHRGEKP 40
Score = 33.9 bits (76), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQP 790
Y C CGK F + + L+ H R H GE+P
Sbjct: 13 YECSECGKAFIQKSTLSMHQRIHRGEKP 40
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 15/30 (50%)
Query: 252 RQHACQECGKTFATSSGLKQHTHIHSSVKP 281
R + C ECGK F S L H IH KP
Sbjct: 11 RHYECSECGKAFIQKSTLSMHQRIHRGEKP 40
>pdb|2EN1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
563- 595) Of Human Zinc Finger Protein 224
Length = 46
Score = 33.5 bits (75), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQP 59
+ C+ CGK F +++ L H R HTGE+P
Sbjct: 13 FKCEECGKRFTQNSQLHSHQRVHTGEKP 40
Score = 33.5 bits (75), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQP 790
+ C+ CGK F +++ L H R HTGE+P
Sbjct: 13 FKCEECGKRFTQNSQLHSHQRVHTGEKP 40
Score = 33.1 bits (74), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 280 KPFRCEVCHKAYTQFSNLCRHKRMHAN 306
KPF+CE C K +TQ S L H+R+H
Sbjct: 11 KPFKCEECGKRFTQNSQLHSHQRVHTG 37
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 57 EQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 88
E+P+KC+ C + F+ +S L H R +H EKP
Sbjct: 10 EKPFKCEECGKRFTQNSQLHSHQR-VHTGEKP 40
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 788 EQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 819
E+P+KC+ C + F+ +S L H R +H EKP
Sbjct: 10 EKPFKCEECGKRFTQNSQLHSHQR-VHTGEKP 40
Score = 30.0 bits (66), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 86 EKPFKCPLCDRCFGQQTNLDRHLKKHEADDGSG 118
EKPFKC C + F Q + L H + H + SG
Sbjct: 10 EKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSG 42
Score = 30.0 bits (66), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 817 EKPFKCPLCDRCFGQQTNLDRHLKKHEADDGSG 849
EKPFKC C + F Q + L H + H + SG
Sbjct: 10 EKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSG 42
Score = 30.0 bits (66), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 256 CQECGKTFATSSGLKQHTHIHSSVKP 281
C+ECGK F +S L H +H+ KP
Sbjct: 15 CEECGKRFTQNSQLHSHQRVHTGEKP 40
>pdb|5ZNF|A Chain A, Alternating Zinc Fingers In The Human Male Associated
Protein Zfy: 2d Nmr Structure Of An Even Finger And
Implications For "jumping-Linker" Dna Recognition
Length = 30
Score = 33.5 bits (75), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 22/30 (73%)
Query: 58 QPYKCKYCERSFSISSNLQRHVRNIHNKEK 87
+ Y+C+YCE + SSNL+ H++ H+KEK
Sbjct: 1 KTYQCQYCEYRSADSSNLKTHIKTKHSKEK 30
Score = 33.5 bits (75), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 22/30 (73%)
Query: 789 QPYKCKYCERSFSISSNLQRHVRNIHNKEK 818
+ Y+C+YCE + SSNL+ H++ H+KEK
Sbjct: 1 KTYQCQYCEYRSADSSNLKTHIKTKHSKEK 30
>pdb|2YTM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
696- 728) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 33.5 bits (75), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQP 59
Y C CGK F +++ T+H R HTG++P
Sbjct: 13 YKCMECGKAFGDNSSCTQHQRLHTGQRP 40
Score = 33.5 bits (75), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQP 790
Y C CGK F +++ T+H R HTG++P
Sbjct: 13 YKCMECGKAFGDNSSCTQHQRLHTGQRP 40
Score = 29.6 bits (65), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 254 HACQECGKTFATSSGLKQHTHIHSSVKP 281
+ C ECGK F +S QH +H+ +P
Sbjct: 13 YKCMECGKAFGDNSSCTQHQRLHTGQRP 40
>pdb|2YTD|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
426- 458) Of Human Zinc Finger Protein 473
Length = 46
Score = 33.5 bits (75), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQP 59
Y C CGK F R +L H R HTG +P
Sbjct: 13 YKCSECGKAFHRHTHLNEHRRIHTGYRP 40
Score = 33.5 bits (75), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQP 790
Y C CGK F R +L H R HTG +P
Sbjct: 13 YKCSECGKAFHRHTHLNEHRRIHTGYRP 40
Score = 30.0 bits (66), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 86 EKPFKCPLCDRCFGQQTNLDRHLKKHEADDGSG 118
EKP+KC C + F + T+L+ H + H SG
Sbjct: 10 EKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSG 42
Score = 30.0 bits (66), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 817 EKPFKCPLCDRCFGQQTNLDRHLKKHEADDGSG 849
EKP+KC C + F + T+L+ H + H SG
Sbjct: 10 EKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSG 42
>pdb|2EP2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
603- 635) Of Human Zinc Finger Protein 484
Length = 46
Score = 33.5 bits (75), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQP 59
Y C CGK F + + L H + HTGE+P
Sbjct: 13 YECSICGKSFTKKSQLHVHQQIHTGEKP 40
Score = 33.5 bits (75), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQP 790
Y C CGK F + + L H + HTGE+P
Sbjct: 13 YECSICGKSFTKKSQLHVHQQIHTGEKP 40
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 57 EQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 88
E+PY+C C +SF+ S L H + IH EKP
Sbjct: 10 EKPYECSICGKSFTKKSQLHVH-QQIHTGEKP 40
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 788 EQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 819
E+PY+C C +SF+ S L H + IH EKP
Sbjct: 10 EKPYECSICGKSFTKKSQLHVH-QQIHTGEKP 40
>pdb|2EPU|A Chain A, Solution Structure Of The Secound C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 45
Score = 33.5 bits (75), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQ 58
+ C +CGK F NL H R HTGE+
Sbjct: 13 FECTHCGKSFRAKGNLVTHQRIHTGEK 39
Score = 33.5 bits (75), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQ 789
+ C +CGK F NL H R HTGE+
Sbjct: 13 FECTHCGKSFRAKGNLVTHQRIHTGEK 39
Score = 29.6 bits (65), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 57 EQPYKCKYCERSFSISSNLQRHVRNIHNKEK 87
++P++C +C +SF NL H R IH EK
Sbjct: 10 QKPFECTHCGKSFRAKGNLVTHQR-IHTGEK 39
Score = 29.6 bits (65), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 788 EQPYKCKYCERSFSISSNLQRHVRNIHNKEK 818
++P++C +C +SF NL H R IH EK
Sbjct: 10 QKPFECTHCGKSFRAKGNLVTHQR-IHTGEK 39
>pdb|2EPY|A Chain A, Solution Structure Of The 10th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 42
Score = 33.1 bits (74), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 19/36 (52%)
Query: 22 GSSSKTTKDRYACKYCGKVFPRSANLTRHLRTHTGE 57
GSS + + + C CGK F + L H R HTGE
Sbjct: 1 GSSGSSGEKLHECNNCGKAFSFKSQLIIHQRIHTGE 36
Score = 33.1 bits (74), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 19/36 (52%)
Query: 753 GSSSKTTKDRYACKYCGKVFPRSANLTRHLRTHTGE 788
GSS + + + C CGK F + L H R HTGE
Sbjct: 1 GSSGSSGEKLHECNNCGKAFSFKSQLIIHQRIHTGE 36
>pdb|2EP1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
435- 467) Of Human Zinc Finger Protein 484
Length = 46
Score = 33.1 bits (74), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQP 59
Y C CGK F + + L H R HTGE P
Sbjct: 13 YECSDCGKSFIKKSQLHVHQRIHTGENP 40
Score = 33.1 bits (74), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQP 790
Y C CGK F + + L H R HTGE P
Sbjct: 13 YECSDCGKSFIKKSQLHVHQRIHTGENP 40
>pdb|1KLR|A Chain A, Nmr Structure Of The Zfy-6t[y10f] Zinc Finger
Length = 30
Score = 33.1 bits (74), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 22/30 (73%)
Query: 58 QPYKCKYCERSFSISSNLQRHVRNIHNKEK 87
+ Y+C+YCE + SSNL+ H++ H+KEK
Sbjct: 1 KTYQCQYCEFRSADSSNLKTHIKTKHSKEK 30
Score = 33.1 bits (74), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 22/30 (73%)
Query: 789 QPYKCKYCERSFSISSNLQRHVRNIHNKEK 818
+ Y+C+YCE + SSNL+ H++ H+KEK
Sbjct: 1 KTYQCQYCEFRSADSSNLKTHIKTKHSKEK 30
>pdb|2D9H|A Chain A, Solution Structure Of The Forth And Fifth Zf-C2h2 Domains
Of Zinc Finger Protein 692
Length = 78
Score = 33.1 bits (74), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Query: 198 YRCESCSQTFCWRPHLNFHQAQ----VHGRKFPCENCTKVFSDPSNLQRHIRTHH 248
+CE C T + LN+HQ + V +FPCE C K F P ++ H H
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSH 62
>pdb|2EPX|A Chain A, Solution Structure Of The Third C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 28 Homolog
Length = 47
Score = 33.1 bits (74), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 29 KDRYACKYCGKVFPRSANLTRHLR-THTGEQP 59
K Y C CGK F ++ +L RH R HTGE+P
Sbjct: 10 KKPYECIECGKAFIQNTSLIRHWRYYHTGEKP 41
Score = 33.1 bits (74), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 760 KDRYACKYCGKVFPRSANLTRHLR-THTGEQP 790
K Y C CGK F ++ +L RH R HTGE+P
Sbjct: 10 KKPYECIECGKAFIQNTSLIRHWRYYHTGEKP 41
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 57 EQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 88
++PY+C C ++F +++L RH R H EKP
Sbjct: 10 KKPYECIECGKAFIQNTSLIRHWRYYHTGEKP 41
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 788 EQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 819
++PY+C C ++F +++L RH R H EKP
Sbjct: 10 KKPYECIECGKAFIQNTSLIRHWRYYHTGEKP 41
>pdb|1XF7|A Chain A, High Resolution Nmr Structure Of The Wilms' Tumor
Suppressor Protein (Wt1) Finger 3
Length = 29
Score = 33.1 bits (74), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQ 58
+ CK C + F RS +L H RTHTGE+
Sbjct: 3 FQCKTCQRKFSRSDHLKTHTRTHTGEK 29
Score = 33.1 bits (74), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQ 789
+ CK C + F RS +L H RTHTGE+
Sbjct: 3 FQCKTCQRKFSRSDHLKTHTRTHTGEK 29
Score = 30.4 bits (67), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 58 QPYKCKYCERSFSISSNLQRHVRNIHNKEK 87
+P++CK C+R FS S +L+ H R H EK
Sbjct: 1 KPFQCKTCQRKFSRSDHLKTHTRT-HTGEK 29
Score = 30.4 bits (67), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 789 QPYKCKYCERSFSISSNLQRHVRNIHNKEK 818
+P++CK C+R FS S +L+ H R H EK
Sbjct: 1 KPFQCKTCQRKFSRSDHLKTHTRT-HTGEK 29
>pdb|2EOJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
355- 385) Of Human Zinc Finger Protein 268
Length = 44
Score = 33.1 bits (74), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGE 57
Y C CGKVF R L H +TH+G+
Sbjct: 13 YECCECGKVFSRKDQLVSHQKTHSGQ 38
Score = 33.1 bits (74), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGE 788
Y C CGKVF R L H +TH+G+
Sbjct: 13 YECCECGKVFSRKDQLVSHQKTHSGQ 38
>pdb|2EM5|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
768- 800) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 33.1 bits (74), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 252 RQHACQECGKTFATSSGLKQHTHIHSSVKP 281
+ H C ECG+ F S L QH IH+ KP
Sbjct: 11 KSHQCHECGRGFTLKSHLNQHQRIHTGEKP 40
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQP 59
+ C CG+ F ++L +H R HTGE+P
Sbjct: 13 HQCHECGRGFTLKSHLNQHQRIHTGEKP 40
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQP 790
+ C CG+ F ++L +H R HTGE+P
Sbjct: 13 HQCHECGRGFTLKSHLNQHQRIHTGEKP 40
Score = 29.6 bits (65), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 60 YKCKYCERSFSISSNLQRHVRNIHNKEKP 88
++C C R F++ S+L +H R IH EKP
Sbjct: 13 HQCHECGRGFTLKSHLNQHQR-IHTGEKP 40
Score = 29.6 bits (65), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 791 YKCKYCERSFSISSNLQRHVRNIHNKEKP 819
++C C R F++ S+L +H R IH EKP
Sbjct: 13 HQCHECGRGFTLKSHLNQHQR-IHTGEKP 40
>pdb|2YTT|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
204- 236) Of Human Zinc Finger Protein 473
Length = 46
Score = 32.7 bits (73), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 17/28 (60%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQP 59
Y C CGK F S LT+H THT E+P
Sbjct: 13 YQCSECGKSFSGSYRLTQHWITHTREKP 40
Score = 32.7 bits (73), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 17/28 (60%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQP 790
Y C CGK F S LT+H THT E+P
Sbjct: 13 YQCSECGKSFSGSYRLTQHWITHTREKP 40
>pdb|2EQ3|A Chain A, Solution Structure Of The 17th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 32.7 bits (73), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 57 EQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 88
E+PY+C C ++FS+ S+L H + IH +KP
Sbjct: 10 EKPYECNQCGKAFSVRSSLTTH-QAIHTGKKP 40
Score = 32.7 bits (73), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 788 EQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 819
E+PY+C C ++FS+ S+L H + IH +KP
Sbjct: 10 EKPYECNQCGKAFSVRSSLTTH-QAIHTGKKP 40
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQP 59
Y C CGK F ++LT H HTG++P
Sbjct: 13 YECNQCGKAFSVRSSLTTHQAIHTGKKP 40
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQP 790
Y C CGK F ++LT H HTG++P
Sbjct: 13 YECNQCGKAFSVRSSLTTHQAIHTGKKP 40
Score = 29.6 bits (65), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 256 CQECGKTFATSSGLKQHTHIHSSVKP 281
C +CGK F+ S L H IH+ KP
Sbjct: 15 CNQCGKAFSVRSSLTTHQAIHTGKKP 40
>pdb|2EM1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
637- 667) Of Human Zinc Finger Protein 268
Length = 44
Score = 32.7 bits (73), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 20/38 (52%)
Query: 22 GSSSKTTKDRYACKYCGKVFPRSANLTRHLRTHTGEQP 59
GSS + + Y+C CGK F + L H HTG +P
Sbjct: 1 GSSGSSGEKPYSCNECGKAFTFKSQLIVHKGVHTGVKP 38
Score = 32.7 bits (73), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 20/38 (52%)
Query: 753 GSSSKTTKDRYACKYCGKVFPRSANLTRHLRTHTGEQP 790
GSS + + Y+C CGK F + L H HTG +P
Sbjct: 1 GSSGSSGEKPYSCNECGKAFTFKSQLIVHKGVHTGVKP 38
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 250 GARQHACQECGKTFATSSGLKQHTHIHSSVKP 281
G + ++C ECGK F S L H +H+ VKP
Sbjct: 7 GEKPYSCNECGKAFTFKSQLIVHKGVHTGVKP 38
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 55 TGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 88
+GE+PY C C ++F+ S L H + +H KP
Sbjct: 6 SGEKPYSCNECGKAFTFKSQLIVH-KGVHTGVKP 38
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 786 TGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 819
+GE+PY C C ++F+ S L H + +H KP
Sbjct: 6 SGEKPYSCNECGKAFTFKSQLIVH-KGVHTGVKP 38
>pdb|2M0E|A Chain A, Solution Structure Of Miz-1 Zinc Finger 6
Length = 29
Score = 32.7 bits (73), Expect = 0.96, Method: Composition-based stats.
Identities = 16/28 (57%), Positives = 17/28 (60%)
Query: 87 KPFKCPLCDRCFGQQTNLDRHLKKHEAD 114
K KCP CD+ F Q NL HLK H AD
Sbjct: 1 KEHKCPHCDKKFNQVGNLKAHLKIHIAD 28
Score = 32.7 bits (73), Expect = 0.96, Method: Composition-based stats.
Identities = 16/28 (57%), Positives = 17/28 (60%)
Query: 818 KPFKCPLCDRCFGQQTNLDRHLKKHEAD 845
K KCP CD+ F Q NL HLK H AD
Sbjct: 1 KEHKCPHCDKKFNQVGNLKAHLKIHIAD 28
>pdb|2EN7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
495- 525) Of Human Zinc Finger Protein 268
Length = 44
Score = 32.7 bits (73), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 15/26 (57%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGE 57
Y C CGK F + L H RTHTGE
Sbjct: 13 YVCNECGKAFRSKSYLIIHTRTHTGE 38
Score = 32.7 bits (73), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 15/26 (57%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGE 788
Y C CGK F + L H RTHTGE
Sbjct: 13 YVCNECGKAFRSKSYLIIHTRTHTGE 38
>pdb|2EPZ|A Chain A, Solution Structure Of The 4th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 28 Homolog
Length = 46
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQP 59
+ C CGK F L +H R HTGE+P
Sbjct: 13 FDCIDCGKAFSDHIGLNQHRRIHTGEKP 40
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQP 790
+ C CGK F L +H R HTGE+P
Sbjct: 13 FDCIDCGKAFSDHIGLNQHRRIHTGEKP 40
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 256 CQECGKTFATSSGLKQHTHIHSSVKP 281
C +CGK F+ GL QH IH+ KP
Sbjct: 15 CIDCGKAFSDHIGLNQHRRIHTGEKP 40
Score = 29.6 bits (65), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 57 EQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 88
E+P+ C C ++FS L +H R IH EKP
Sbjct: 10 EKPFDCIDCGKAFSDHIGLNQH-RRIHTGEKP 40
Score = 29.6 bits (65), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 788 EQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 819
E+P+ C C ++FS L +H R IH EKP
Sbjct: 10 EKPFDCIDCGKAFSDHIGLNQH-RRIHTGEKP 40
>pdb|2EMX|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
273- 303) Of Human Zinc Finger Protein 268
Length = 44
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 55 TGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 88
+GE+P+ C CE++FS S L H + H +EKP
Sbjct: 6 SGEKPFGCSCCEKAFSSKSYLLVH-QQTHAEEKP 38
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 786 TGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 819
+GE+P+ C CE++FS S L H + H +EKP
Sbjct: 6 SGEKPFGCSCCEKAFSSKSYLLVH-QQTHAEEKP 38
Score = 29.6 bits (65), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 277 SSVKPFRCEVCHKAYTQFSNLCRHKRMHA 305
S KPF C C KA++ S L H++ HA
Sbjct: 6 SGEKPFGCSCCEKAFSSKSYLLVHQQTHA 34
>pdb|2ENT|A Chain A, Solution Structure Of The Second C2h2-Type Zinc Finger
Domain From Human Krueppel-Like Factor 15
Length = 48
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Query: 32 YACKY--CGKVFPRSANLTRHLRTHTGEQP 59
+AC + CG F RS L+RH R+H+G +P
Sbjct: 13 FACTWPGCGWRFSRSDELSRHRRSHSGVKP 42
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Query: 763 YACKY--CGKVFPRSANLTRHLRTHTGEQP 790
+AC + CG F RS L+RH R+H+G +P
Sbjct: 13 FACTWPGCGWRFSRSDELSRHRRSHSGVKP 42
>pdb|2YSP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
507- 539) Of Human Zinc Finger Protein 224
Length = 46
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQP 59
Y C+ CGK + NL H + HTGE+P
Sbjct: 13 YKCEKCGKGYNSKFNLDMHQKVHTGERP 40
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQP 790
Y C+ CGK + NL H + HTGE+P
Sbjct: 13 YKCEKCGKGYNSKFNLDMHQKVHTGERP 40
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 86 EKPFKCPLCDRCFGQQTNLDRHLKKHEADDGSG 118
EKP+KC C + + + NLD H K H + SG
Sbjct: 10 EKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSG 42
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 817 EKPFKCPLCDRCFGQQTNLDRHLKKHEADDGSG 849
EKP+KC C + + + NLD H K H + SG
Sbjct: 10 EKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSG 42
>pdb|2EML|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
752- 784) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQP 59
Y C CGK F +L+ H R H+G++P
Sbjct: 13 YECSVCGKAFSHRQSLSVHQRIHSGKKP 40
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQP 790
Y C CGK F +L+ H R H+G++P
Sbjct: 13 YECSVCGKAFSHRQSLSVHQRIHSGKKP 40
Score = 30.8 bits (68), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 280 KPFRCEVCHKAYTQFSNLCRHKRMHAN 306
KP+ C VC KA++ +L H+R+H+
Sbjct: 11 KPYECSVCGKAFSHRQSLSVHQRIHSG 37
Score = 29.6 bits (65), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 57 EQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 88
E+PY+C C ++FS +L H R IH+ +KP
Sbjct: 10 EKPYECSVCGKAFSHRQSLSVHQR-IHSGKKP 40
Score = 29.6 bits (65), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 788 EQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 819
E+PY+C C ++FS +L H R IH+ +KP
Sbjct: 10 EKPYECSVCGKAFSHRQSLSVHQR-IHSGKKP 40
>pdb|2EOF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
411- 441) Of Human Zinc Finger Protein 268
Length = 44
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 15/26 (57%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGE 57
Y C C K F +NL H RTHTGE
Sbjct: 13 YECNECQKAFNTKSNLMVHQRTHTGE 38
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 15/26 (57%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGE 788
Y C C K F +NL H RTHTGE
Sbjct: 13 YECNECQKAFNTKSNLMVHQRTHTGE 38
Score = 30.0 bits (66), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 57 EQPYKCKYCERSFSISSNLQRHVR 80
E+PY+C C+++F+ SNL H R
Sbjct: 10 EKPYECNECQKAFNTKSNLMVHQR 33
Score = 30.0 bits (66), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 788 EQPYKCKYCERSFSISSNLQRHVR 811
E+PY+C C+++F+ SNL H R
Sbjct: 10 EKPYECNECQKAFNTKSNLMVHQR 33
Score = 29.6 bits (65), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 86 EKPFKCPLCDRCFGQQTNLDRHLKKHEADDG 116
EKP++C C + F ++NL H + H + G
Sbjct: 10 EKPYECNECQKAFNTKSNLMVHQRTHTGESG 40
Score = 29.6 bits (65), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 817 EKPFKCPLCDRCFGQQTNLDRHLKKHEADDG 847
EKP++C C + F ++NL H + H + G
Sbjct: 10 EKPYECNECQKAFNTKSNLMVHQRTHTGESG 40
Score = 29.6 bits (65), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 280 KPFRCEVCHKAYTQFSNLCRHKRMH 304
KP+ C C KA+ SNL H+R H
Sbjct: 11 KPYECNECQKAFNTKSNLMVHQRTH 35
>pdb|2EL6|A Chain A, Solution Structure Of The 21th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 46
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 59 PYKCKYCERSFSISSNLQRHVRNIHNKEKP 88
PYKC CE+SFS L H R +H +EKP
Sbjct: 12 PYKCSQCEKSFSGKLRLLVHQR-MHTREKP 40
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 790 PYKCKYCERSFSISSNLQRHVRNIHNKEKP 819
PYKC CE+SFS L H R +H +EKP
Sbjct: 12 PYKCSQCEKSFSGKLRLLVHQR-MHTREKP 40
>pdb|2EOP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
719- 751) Of Human Zinc Finger Protein 268
Length = 46
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQP 59
+ C+ CGK F ++ L H R HTGE P
Sbjct: 13 HECRECGKSFSFNSQLIVHQRIHTGENP 40
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQP 790
+ C+ CGK F ++ L H R HTGE P
Sbjct: 13 HECRECGKSFSFNSQLIVHQRIHTGENP 40
Score = 31.2 bits (69), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 57 EQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 88
E+P++C+ C +SFS +S L H R IH E P
Sbjct: 10 EKPHECRECGKSFSFNSQLIVHQR-IHTGENP 40
Score = 31.2 bits (69), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 788 EQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 819
E+P++C+ C +SFS +S L H R IH E P
Sbjct: 10 EKPHECRECGKSFSFNSQLIVHQR-IHTGENP 40
Score = 30.8 bits (68), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 254 HACQECGKTFATSSGLKQHTHIHSSVKP 281
H C+ECGK+F+ +S L H IH+ P
Sbjct: 13 HECRECGKSFSFNSQLIVHQRIHTGENP 40
>pdb|2EN3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
796- 828) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 86 EKPFKCPLCDRCFGQQTNLDRHLKKHEADDGSG 118
EKPF+C C F +L +HL+ HE D SG
Sbjct: 10 EKPFQCKECGMNFSWSCSLFKHLRSHERTDPSG 42
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 817 EKPFKCPLCDRCFGQQTNLDRHLKKHEADDGSG 849
EKPF+C C F +L +HL+ HE D SG
Sbjct: 10 EKPFQCKECGMNFSWSCSLFKHLRSHERTDPSG 42
Score = 29.6 bits (65), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 57 EQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 88
E+P++CK C +FS S +L +H+R+ H + P
Sbjct: 10 EKPFQCKECGMNFSWSCSLFKHLRS-HERTDP 40
Score = 29.6 bits (65), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 788 EQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 819
E+P++CK C +FS S +L +H+R+ H + P
Sbjct: 10 EKPFQCKECGMNFSWSCSLFKHLRS-HERTDP 40
>pdb|2YU5|A Chain A, Solution Structure Of The Zf-C2h2 Domain (669-699aa) In
Zinc Finger Protein 473
Length = 44
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 86 EKPFKCPLCDRCFGQQTNLDRHLKKHEADDG 116
E PFKC CDR F Q+ L +H + H G
Sbjct: 10 ENPFKCSKCDRVFTQRNYLVQHERTHARKSG 40
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 817 EKPFKCPLCDRCFGQQTNLDRHLKKHEADDG 847
E PFKC CDR F Q+ L +H + H G
Sbjct: 10 ENPFKCSKCDRVFTQRNYLVQHERTHARKSG 40
Score = 29.3 bits (64), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 281 PFRCEVCHKAYTQFSNLCRHKRMHA 305
PF+C C + +TQ + L +H+R HA
Sbjct: 12 PFKCSKCDRVFTQRNYLVQHERTHA 36
>pdb|2ELT|A Chain A, Solution Structure Of The 3rd C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 87 KPFKCPLCDRCFGQQTNLDRHLKKHEAD 114
KP+KCP C + NL+ HL+KH +
Sbjct: 8 KPYKCPQCSYASAIKANLNVHLRKHTGE 35
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 818 KPFKCPLCDRCFGQQTNLDRHLKKHEAD 845
KP+KCP C + NL+ HL+KH +
Sbjct: 8 KPYKCPQCSYASAIKANLNVHLRKHTGE 35
>pdb|2ELZ|A Chain A, Solution Structure Of The 17th Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQ 58
Y C+ CGK + R NL H R H GE+
Sbjct: 13 YKCEDCGKGYNRRLNLDMHQRVHMGEK 39
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQ 789
Y C+ CGK + R NL H R H GE+
Sbjct: 13 YKCEDCGKGYNRRLNLDMHQRVHMGEK 39
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 86 EKPFKCPLCDRCFGQQTNLDRHLKKHEADDGSG 118
EKP+KC C + + ++ NLD H + H + SG
Sbjct: 10 EKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSG 42
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 817 EKPFKCPLCDRCFGQQTNLDRHLKKHEADDGSG 849
EKP+KC C + + ++ NLD H + H + SG
Sbjct: 10 EKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSG 42
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 280 KPFRCEVCHKAYTQFSNLCRHKRMHAN 306
KP++CE C K Y + NL H+R+H
Sbjct: 11 KPYKCEDCGKGYNRRLNLDMHQRVHMG 37
>pdb|2YTO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
659- 691) Of Human Zinc Finger Protein 484
Length = 46
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQ 58
Y C CGK F R + L H ++HTGE+
Sbjct: 13 YKCSDCGKAFTRKSGLHIHQQSHTGER 39
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQ 789
Y C CGK F R + L H ++HTGE+
Sbjct: 13 YKCSDCGKAFTRKSGLHIHQQSHTGER 39
>pdb|2EOW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
368- 400) Of Human Zinc Finger Protein 347
Length = 46
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQP 59
Y C CGK F ++L H TH+GE+P
Sbjct: 13 YKCNECGKAFRARSSLAIHQATHSGEKP 40
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQP 790
Y C CGK F ++L H TH+GE+P
Sbjct: 13 YKCNECGKAFRARSSLAIHQATHSGEKP 40
Score = 29.6 bits (65), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 57 EQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 88
E+PYKC C ++F S+L H + H+ EKP
Sbjct: 10 EKPYKCNECGKAFRARSSLAIH-QATHSGEKP 40
Score = 29.6 bits (65), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 788 EQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 819
E+PYKC C ++F S+L H + H+ EKP
Sbjct: 10 EKPYKCNECGKAFRARSSLAIH-QATHSGEKP 40
>pdb|2EOO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
425- 457) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 86 EKPFKCPLCDRCFGQQTNLDRHLKKHEADDGSG 118
E+P+ C C + FG+ ++L HLK+H + SG
Sbjct: 10 ERPYGCNECGKNFGRHSHLIEHLKRHFREKSSG 42
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 817 EKPFKCPLCDRCFGQQTNLDRHLKKHEADDGSG 849
E+P+ C C + FG+ ++L HLK+H + SG
Sbjct: 10 ERPYGCNECGKNFGRHSHLIEHLKRHFREKSSG 42
>pdb|2EM0|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
Query: 57 EQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 88
E+ +KC+ C+ FS +S+L+ H +N+H EKP
Sbjct: 10 EKTWKCRECDMCFSQASSLRLH-QNVHVGEKP 40
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
Query: 788 EQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 819
E+ +KC+ C+ FS +S+L+ H +N+H EKP
Sbjct: 10 EKTWKCRECDMCFSQASSLRLH-QNVHVGEKP 40
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 86 EKPFKCPLCDRCFGQQTNLDRHLKKHEADDGSG 118
EK +KC CD CF Q ++L H H + SG
Sbjct: 10 EKTWKCRECDMCFSQASSLRLHQNVHVGEKPSG 42
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 817 EKPFKCPLCDRCFGQQTNLDRHLKKHEADDGSG 849
EK +KC CD CF Q ++L H H + SG
Sbjct: 10 EKTWKCRECDMCFSQASSLRLHQNVHVGEKPSG 42
>pdb|1P7A|A Chain A, Solution Stucture Of The Third Zinc Finger From Bklf
Length = 37
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 87 KPFKCPLCDRCFGQQTNLDRHLKKH 111
KPF+CP CDR F + +L H K+H
Sbjct: 10 KPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 818 KPFKCPLCDRCFGQQTNLDRHLKKH 842
KPF+CP CDR F + +L H K+H
Sbjct: 10 KPFQCPDCDRSFSRSDHLALHRKRH 34
>pdb|2LVT|A Chain A, Solution Structure Of Miz-1 Zinc Finger 9
Length = 29
Score = 31.6 bits (70), Expect = 2.0, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 34 CKYCGKVFPRSANLTRHLRTHTGEQ 58
C CGK F ++++L H+R HTGE+
Sbjct: 5 CVMCGKAFTQASSLIAHVRQHTGEK 29
Score = 31.6 bits (70), Expect = 2.0, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 765 CKYCGKVFPRSANLTRHLRTHTGEQ 789
C CGK F ++++L H+R HTGE+
Sbjct: 5 CVMCGKAFTQASSLIAHVRQHTGEK 29
Score = 30.0 bits (66), Expect = 7.1, Method: Composition-based stats.
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 280 KPFRCEVCHKAYTQFSNLCRHKRMH 304
KP +C +C KA+TQ S+L H R H
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQH 25
>pdb|2ELY|A Chain A, Solution Structure Of The Third Zf-C2h2 Domain From
Human Zinc Finger Protein 224
Length = 46
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQP 59
+ C CGK F R + L H + HTGE+P
Sbjct: 13 FKCVECGKGFSRRSALNVHHKLHTGEKP 40
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQP 790
+ C CGK F R + L H + HTGE+P
Sbjct: 13 FKCVECGKGFSRRSALNVHHKLHTGEKP 40
Score = 30.8 bits (68), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 86 EKPFKCPLCDRCFGQQTNLDRHLKKHEADDGSG 118
EKPFKC C + F +++ L+ H K H + SG
Sbjct: 10 EKPFKCVECGKGFSRRSALNVHHKLHTGEKPSG 42
Score = 30.8 bits (68), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 817 EKPFKCPLCDRCFGQQTNLDRHLKKHEADDGSG 849
EKPFKC C + F +++ L+ H K H + SG
Sbjct: 10 EKPFKCVECGKGFSRRSALNVHHKLHTGEKPSG 42
>pdb|2EOI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
329- 359) Of Human Zinc Finger Protein 268
Length = 44
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 19/38 (50%)
Query: 22 GSSSKTTKDRYACKYCGKVFPRSANLTRHLRTHTGEQP 59
GSS + + + C C K F + L H R HTGE P
Sbjct: 1 GSSGSSGEKLHECSECRKTFSFHSQLVIHQRIHTGENP 38
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 19/38 (50%)
Query: 753 GSSSKTTKDRYACKYCGKVFPRSANLTRHLRTHTGEQP 790
GSS + + + C C K F + L H R HTGE P
Sbjct: 1 GSSGSSGEKLHECSECRKTFSFHSQLVIHQRIHTGENP 38
>pdb|3M1I|B Chain B, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 191
Score = 31.6 bits (70), Expect = 2.2, Method: Composition-based stats.
Identities = 29/93 (31%), Positives = 40/93 (43%), Gaps = 5/93 (5%)
Query: 443 EEKRKNSPSPRKSDVPKTSGGKLFEFSES-KDSPPTAEEANSNQRPSPARPTISASNAVT 501
++K + +P P S V GGK E E+ KD T EE +P P I V
Sbjct: 1 DKKEEAAPKPPSSAVFSMFGGKKAEKPETKKDEEDTKEETKKEGDDAPESPDIHFEPVVH 60
Query: 502 YPDPREQLEVVTTDVKSDVNQKPRDKLTNFSID 534
E+++V T + +V K R KL F D
Sbjct: 61 L----EKVDVKTMEEDEEVLYKVRAKLFRFDAD 89
>pdb|2EOH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
780- 812) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQ 58
Y CK C K F + +L +H R HTGE+
Sbjct: 13 YECKECRKTFIQIGHLNQHKRVHTGER 39
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQ 789
Y CK C K F + +L +H R HTGE+
Sbjct: 13 YECKECRKTFIQIGHLNQHKRVHTGER 39
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 280 KPFRCEVCHKAYTQFSNLCRHKRMHANCR 308
KP+ C+ C K + Q +L +HKR+H R
Sbjct: 11 KPYECKECRKTFIQIGHLNQHKRVHTGER 39
>pdb|1VA1|A Chain A, Solution Structure Of Transcription Factor Sp1 Dna
Binding Domain (Zinc Finger 1)
Length = 37
Score = 31.6 bits (70), Expect = 2.5, Method: Composition-based stats.
Identities = 12/22 (54%), Positives = 18/22 (81%)
Query: 37 CGKVFPRSANLTRHLRTHTGEQ 58
CGKV+ ++++L HLR HTGE+
Sbjct: 16 CGKVYGKTSHLRAHLRWHTGER 37
Score = 31.6 bits (70), Expect = 2.5, Method: Composition-based stats.
Identities = 12/22 (54%), Positives = 18/22 (81%)
Query: 768 CGKVFPRSANLTRHLRTHTGEQ 789
CGKV+ ++++L HLR HTGE+
Sbjct: 16 CGKVYGKTSHLRAHLRWHTGER 37
>pdb|3VTH|A Chain A, Crystal Structure Of Full-Length Hypf In The Phosphate-
And Nucleotide-Bound Form
pdb|3VTH|B Chain B, Crystal Structure Of Full-Length Hypf In The Phosphate-
And Nucleotide-Bound Form
pdb|3VTI|A Chain A, Crystal Structure Of Hype-Hypf Complex
pdb|3VTI|B Chain B, Crystal Structure Of Hype-Hypf Complex
Length = 761
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 10/71 (14%)
Query: 191 HRYPPDQYRCESCSQTFCWRPHLNFHQAQVHGRKFP-CENCTKVFSDPSNLQRHIRTHHV 249
+RYP C +C F + + +A+ + FP CE C++ + DP H R H
Sbjct: 129 YRYPF--INCTNCGPRFSIIEDIPYDRAKTSMKVFPMCEKCSREYHDP-----HDRRFH- 180
Query: 250 GARQHACQECG 260
A+ AC +CG
Sbjct: 181 -AQPVACFDCG 190
>pdb|1ZKC|A Chain A, Crystal Structure Of The Cyclophiln_ring Domain Of Human
Peptidylprolyl Isomerase (Cyclophilin)-Like 2 Isoform B
pdb|1ZKC|B Chain B, Crystal Structure Of The Cyclophiln_ring Domain Of Human
Peptidylprolyl Isomerase (Cyclophilin)-Like 2 Isoform B
Length = 197
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
Query: 116 GSGLVSMADSPESSNENE-----REDAYFDEIRSFMGKVTYSGDVAYNQENL 162
G G++SMA+S +SN ++ R AY D+ + G+V DV EN+
Sbjct: 102 GRGILSMANSGPNSNRSQFFITFRSCAYLDKKHTIFGRVVGGFDVLTAMENV 153
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
Query: 847 GSGLVSMADSPESSNENE-----REDAYFDEIRSFMGKVTYSGDVAYNQENL 893
G G++SMA+S +SN ++ R AY D+ + G+V DV EN+
Sbjct: 102 GRGILSMANSGPNSNRSQFFITFRSCAYLDKKHTIFGRVVGGFDVLTAMENV 153
>pdb|1ARD|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
Implications For Dna Binding
Length = 29
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQ 58
+ C+ C + F R +L RH R+HT E+
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQ 789
+ C+ C + F R +L RH R+HT E+
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 225 FPCENCTKVFSDPSNLQRHIRTH 247
F CE CT+ F+ +L+RH R+H
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSH 25
>pdb|2EM8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
423- 455) Of Human Zinc Finger Protein 224
Length = 46
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQ 58
Y C CGK + R +L H R HTGE+
Sbjct: 13 YKCVECGKGYKRRLDLDFHQRVHTGEK 39
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQ 789
Y C CGK + R +L H R HTGE+
Sbjct: 13 YKCVECGKGYKRRLDLDFHQRVHTGEK 39
>pdb|2EL4|A Chain A, Solution Structure Of The 15th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 46
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQP 59
Y C C K F + L H R+HTG +P
Sbjct: 13 YGCSQCAKTFSLKSQLIVHQRSHTGVKP 40
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQP 790
Y C C K F + L H R+HTG +P
Sbjct: 13 YGCSQCAKTFSLKSQLIVHQRSHTGVKP 40
>pdb|2EOX|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
315- 345) Of Human Zinc Finger Protein 473
Length = 44
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 15/24 (62%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHT 55
Y C CGK F R +LTRH + HT
Sbjct: 13 YNCNECGKAFTRIFHLTRHQKIHT 36
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 15/24 (62%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHT 786
Y C CGK F R +LTRH + HT
Sbjct: 13 YNCNECGKAFTRIFHLTRHQKIHT 36
>pdb|2EJ4|A Chain A, Functional And Structural Basis Of Nuclear Localization
Signal In Zic3 Zinc Finger Domain: A Role Of Conserved
Tryptophan Residue In The Zinc Finger Domain
Length = 95
Score = 30.8 bits (68), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 8/63 (12%)
Query: 226 PCENCTKVFSDPSNLQRHIRTHHVGA---RQHAC--QEC---GKTFATSSGLKQHTHIHS 277
P ++C + FS L H+ HVG H C +EC GK+F L H +H+
Sbjct: 27 PKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHT 86
Query: 278 SVK 280
K
Sbjct: 87 GEK 89
>pdb|1U85|A Chain A, Arg326-Trp Mutant Of The Third Zinc Finger Of Bklf
Length = 33
Score = 30.8 bits (68), Expect = 4.1, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 87 KPFKCPLCDRCFGQQTNLDRHLKKH 111
KPF+CP CD F + +L H K+H
Sbjct: 6 KPFQCPDCDWSFSRSDHLALHRKRH 30
Score = 30.8 bits (68), Expect = 4.1, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 818 KPFKCPLCDRCFGQQTNLDRHLKKH 842
KPF+CP CD F + +L H K+H
Sbjct: 6 KPFQCPDCDWSFSRSDHLALHRKRH 30
>pdb|1ARE|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
Implications For Dna Binding
Length = 29
Score = 30.8 bits (68), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQ 58
+ C+ C + F R L RH R+HT E+
Sbjct: 3 FVCEVCTRAFARQEALKRHYRSHTNEK 29
Score = 30.8 bits (68), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQ 789
+ C+ C + F R L RH R+HT E+
Sbjct: 3 FVCEVCTRAFARQEALKRHYRSHTNEK 29
>pdb|2ELQ|A Chain A, Solution Structure Of The 14th C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 30.4 bits (67), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 87 KPFKCPLCDRCFGQQTNLDRHLKKHEAD 114
KPFKC LC+ ++NL H+ +H +
Sbjct: 8 KPFKCSLCEYATRSKSNLKAHMNRHSTE 35
Score = 30.4 bits (67), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 818 KPFKCPLCDRCFGQQTNLDRHLKKHEAD 845
KPFKC LC+ ++NL H+ +H +
Sbjct: 8 KPFKCSLCEYATRSKSNLKAHMNRHSTE 35
>pdb|3ZYQ|A Chain A, Crystal Structure Of The Tandem Vhs And Fyve Domains Of
Hepatocyte Growth Factor-Regulated Tyrosine Kinase
Substrate (Hgs-Hrs) At 1.48 A Resolution
pdb|4AVX|A Chain A, Hepatocyte Growth Factor-Regulated Tyrosine Kinase
Substrate (Hgs-Hrs) Bound To An Ip2 Compound At 1.68 A
Resolution
Length = 226
Score = 30.4 bits (67), Expect = 4.9, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Query: 285 EVCHKAYTQFSNLCRHKRMHANCRMQIKCVKCDQSFSTVTS--LSKHKRFCD 334
E CH+ QF + R + H QI C KC +ST+ + K R C+
Sbjct: 165 EECHRCRVQFGVMTR--KHHCRACGQIFCGKCSSKYSTIPKFGIEKEVRVCE 214
>pdb|1ARF|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
Implications For Dna Binding
Length = 29
Score = 30.4 bits (67), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQ 58
+ C+ C + F R L RH R+HT E+
Sbjct: 3 FVCEVCTRAFARQEYLKRHYRSHTNEK 29
Score = 30.4 bits (67), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQ 789
+ C+ C + F R L RH R+HT E+
Sbjct: 3 FVCEVCTRAFARQEYLKRHYRSHTNEK 29
>pdb|2EPQ|A Chain A, Solution Structure Of The Third Zinc Finger Domain Of Zinc
Finger Protein 278
Length = 45
Score = 30.4 bits (67), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 86 EKPFKCPLCDRCFGQQTNLDRHLKKHEADDG 116
EKP+ CP+C F ++ + H++ H+ G
Sbjct: 8 EKPYSCPVCGLRFKRKDRMSYHVRSHDGSVG 38
Score = 30.4 bits (67), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 817 EKPFKCPLCDRCFGQQTNLDRHLKKHEADDG 847
EKP+ CP+C F ++ + H++ H+ G
Sbjct: 8 EKPYSCPVCGLRFKRKDRMSYHVRSHDGSVG 38
Score = 30.0 bits (66), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 22 GSSSKTTKDRYACKYCGKVFPRSANLTRHLRTHTG 56
GSS + + Y+C CG F R ++ H+R+H G
Sbjct: 1 GSSGSSGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 35
Score = 30.0 bits (66), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 753 GSSSKTTKDRYACKYCGKVFPRSANLTRHLRTHTG 787
GSS + + Y+C CG F R ++ H+R+H G
Sbjct: 1 GSSGSSGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 35
>pdb|2LVH|A Chain A, Solution Structure Of The Zinc Finger Afv1p06 Protein
From The Hyperthermophilic Archaeal Virus Afv1
Length = 59
Score = 30.0 bits (66), Expect = 5.8, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 17/41 (41%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSIS 72
Y C CG F L RHL P Y +SFS+S
Sbjct: 11 YQCLRCGLTFRTKKQLIRHLVNTEKVNPLSIDYYYQSFSVS 51
Score = 30.0 bits (66), Expect = 5.8, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 17/41 (41%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSIS 803
Y C CG F L RHL P Y +SFS+S
Sbjct: 11 YQCLRCGLTFRTKKQLIRHLVNTEKVNPLSIDYYYQSFSVS 51
>pdb|2EOK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
441- 469) Of Human Zinc Finger Protein 268
Length = 42
Score = 30.0 bits (66), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 17/35 (48%)
Query: 22 GSSSKTTKDRYACKYCGKVFPRSANLTRHLRTHTG 56
GSS + + Y C CGK F + L H HTG
Sbjct: 1 GSSGSSGEKPYVCSDCGKAFTFKSQLIVHQGIHTG 35
Score = 30.0 bits (66), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 17/35 (48%)
Query: 753 GSSSKTTKDRYACKYCGKVFPRSANLTRHLRTHTG 787
GSS + + Y C CGK F + L H HTG
Sbjct: 1 GSSGSSGEKPYVCSDCGKAFTFKSQLIVHQGIHTG 35
>pdb|2EOS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
626- 654) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 30.0 bits (66), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 14/28 (50%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQP 59
Y C+ CG F L HLR HTG P
Sbjct: 12 YPCEICGTRFRHLQTLKSHLRIHTGSGP 39
Score = 30.0 bits (66), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 14/28 (50%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQP 790
Y C+ CG F L HLR HTG P
Sbjct: 12 YPCEICGTRFRHLQTLKSHLRIHTGSGP 39
>pdb|1SRK|A Chain A, Solution Structure Of The Third Zinc Finger Domain Of
Fog-1
Length = 35
Score = 29.6 bits (65), Expect = 7.4, Method: Composition-based stats.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 277 SSVKPFRCEVCHKAYTQFSNLCRHKRMHAN 306
S +PF C +C A+T +N RH ++H +
Sbjct: 3 SGKRPFVCRICLSAFTTKANCARHLKVHTD 32
>pdb|2M0D|A Chain A, Solution Structure Of Miz-1 Zinc Finger 5
Length = 30
Score = 29.6 bits (65), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 225 FPCENCTKVFSDPSNLQRHIRTH 247
+ C+ C + FSDP++ RH+ TH
Sbjct: 4 YQCDYCGRSFSDPTSKMRHLETH 26
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.129 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,234,488
Number of Sequences: 62578
Number of extensions: 1211465
Number of successful extensions: 4274
Number of sequences better than 100.0: 198
Number of HSP's better than 100.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 2152
Number of HSP's gapped (non-prelim): 1727
length of query: 971
length of database: 14,973,337
effective HSP length: 108
effective length of query: 863
effective length of database: 8,214,913
effective search space: 7089469919
effective search space used: 7089469919
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 56 (26.2 bits)