RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14939
(971 letters)
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein,
DNA- binding, transcription, C2H2-type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 115 bits (292), Expect = 6e-31
Identities = 35/80 (43%), Positives = 50/80 (62%), Gaps = 1/80 (1%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 91
+ C+ CGK F R L H+R HTG +PYKCK C+ + + SS+L +H+R IH+ E+PFKC
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLR-IHSDERPFKC 67
Query: 92 PLCDRCFGQQTNLDRHLKKH 111
+C + L HL+ H
Sbjct: 68 QICPYASRNSSQLTVHLRSH 87
Score = 115 bits (292), Expect = 6e-31
Identities = 35/80 (43%), Positives = 50/80 (62%), Gaps = 1/80 (1%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 822
+ C+ CGK F R L H+R HTG +PYKCK C+ + + SS+L +H+R IH+ E+PFKC
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLR-IHSDERPFKC 67
Query: 823 PLCDRCFGQQTNLDRHLKKH 842
+C + L HL+ H
Sbjct: 68 QICPYASRNSSQLTVHLRSH 87
Score = 97.1 bits (243), Expect = 2e-24
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 91
Y CK C S++L +HLR H+ E+P+KC+ C + SS L H+R H +
Sbjct: 37 YKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHLR-SHTGDSGPSS 95
Score = 97.1 bits (243), Expect = 2e-24
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 822
Y CK C S++L +HLR H+ E+P+KC+ C + SS L H+R H +
Sbjct: 37 YKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHLR-SHTGDSGPSS 95
Score = 94.0 bits (235), Expect = 3e-23
Identities = 31/78 (39%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 227 CENCTKVFSDPSNLQRHIRTHHVGARQHACQECGKTFATSSGLKQHTHIHSSVKPFRCEV 286
CE C K FS L+ H+R H G + + C+ C A SS L +H IHS +PF+C++
Sbjct: 11 CEVCGKCFSRKDKLKTHMRCH-TGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQI 69
Query: 287 CHKAYTQFSNLCRHKRMH 304
C A S L H R H
Sbjct: 70 CPYASRNSSQLTVHLRSH 87
Score = 87.1 bits (217), Expect = 8e-21
Identities = 26/89 (29%), Positives = 38/89 (42%), Gaps = 4/89 (4%)
Query: 198 YRCESCSQTFCWRPHLNFHQAQVH-GRK-FPCENCTKVFSDPSNLQRHIRTHHVGARQHA 255
++CE C + F + L H + H G K + C+ C +D S+L +H+R H R
Sbjct: 9 HKCEVCGKCFSRKDKLKTHM-RCHTGVKPYKCKTCDYAAADSSSLNKHLRIH-SDERPFK 66
Query: 256 CQECGKTFATSSGLKQHTHIHSSVKPFRC 284
CQ C SS L H H+
Sbjct: 67 CQICPYASRNSSQLTVHLRSHTGDSGPSS 95
Score = 84.8 bits (211), Expect = 6e-20
Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 248 HVGARQHACQECGKTFATSSGLKQHTHIHSSVKPFRCEVCHKAYTQFSNLCRHKRMHANC 307
+ H C+ CGK F+ LK H H+ VKP++C+ C A S+L +H R+H++
Sbjct: 3 SGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDE 62
Query: 308 RMQIKCVKCDQSFSTVTSLSKHKR 331
R KC C + + L+ H R
Sbjct: 63 R-PFKCQICPYASRNSSQLTVHLR 85
Score = 82.5 bits (205), Expect = 3e-19
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 53 THTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 111
+ P+KC+ C + FS L+ H+R H KP+KC CD ++L++HL+ H
Sbjct: 2 SSGSSGPHKCEVCGKCFSRKDKLKTHMR-CHTGVKPYKCKTCDYAAADSSSLNKHLRIH 59
Score = 82.5 bits (205), Expect = 3e-19
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 784 THTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 842
+ P+KC+ C + FS L+ H+R H KP+KC CD ++L++HL+ H
Sbjct: 2 SSGSSGPHKCEVCGKCFSRKDKLKTHMR-CHTGVKPYKCKTCDYAAADSSSLNKHLRIH 59
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 113 bits (286), Expect = 2e-30
Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 91
+ C+ C + F RS +LT H+RTHTGE+P+ C C R F+ S +RH I + P
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRD-IQH-ILPILE 61
Query: 92 PLCDRCFGQQTNLDRH 107
+ + +L+
Sbjct: 62 DKVEELLSKNYHLENE 77
Score = 113 bits (286), Expect = 2e-30
Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 822
+ C+ C + F RS +LT H+RTHTGE+P+ C C R F+ S +RH I + P
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRD-IQH-ILPILE 61
Query: 823 PLCDRCFGQQTNLDRH 838
+ + +L+
Sbjct: 62 DKVEELLSKNYHLENE 77
Score = 89.1 bits (222), Expect = 1e-21
Identities = 24/83 (28%), Positives = 35/83 (42%), Gaps = 5/83 (6%)
Query: 225 FPCENCTKVFSDPSNLQRHIRTHHVGARQHACQECGKTFATSSGLKQHTHIHSSVKPFRC 284
F C C + FS +L HIRTH G + AC CG+ FA S K+H I P
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTH-TGEKPFACDICGRKFARSDERKRHRDIQHI-LPILE 61
Query: 285 EVCHKAYTQFSNLCRHK---RMH 304
+ + ++ +L +
Sbjct: 62 DKVEELLSKNYHLENEVARLKKL 84
Score = 77.9 bits (193), Expect = 9e-18
Identities = 18/78 (23%), Positives = 32/78 (41%), Gaps = 2/78 (2%)
Query: 254 HACQECGKTFATSSGLKQHTHIHSSVKPFRCEVCHKAYTQFSNLCRHKRMHANCRMQIKC 313
C+ C + F+ S L H H+ KPF C++C + + + RH+ + + I
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQH--ILPILE 61
Query: 314 VKCDQSFSTVTSLSKHKR 331
K ++ S L
Sbjct: 62 DKVEELLSKNYHLENEVA 79
Score = 77.2 bits (191), Expect = 2e-17
Identities = 15/58 (25%), Positives = 21/58 (36%), Gaps = 3/58 (5%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRN--IHNKEK 87
+AC CG+ F RS RH P E S + +L+ V E+
Sbjct: 32 FACDICGRKFARSDERKRHRDIQH-ILPILEDKVEELLSKNYHLENEVARLKKLVGER 88
Score = 77.2 bits (191), Expect = 2e-17
Identities = 15/58 (25%), Positives = 21/58 (36%), Gaps = 3/58 (5%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRN--IHNKEK 818
+AC CG+ F RS RH P E S + +L+ V E+
Sbjct: 32 FACDICGRKFARSDERKRHRDIQH-ILPILEDKVEELLSKNYHLENEVARLKKLVGER 88
Score = 76.0 bits (188), Expect = 4e-17
Identities = 17/77 (22%), Positives = 30/77 (38%), Gaps = 5/77 (6%)
Query: 198 YRCESCSQTFCWRPHLNFHQAQVH-GRK-FPCENCTKVFSDPSNLQRHIRTHHVGARQHA 255
++C C + F HL H + H G K F C+ C + F+ +RH H
Sbjct: 4 FQCRICMRNFSRSDHLTTHI-RTHTGEKPFACDICGRKFARSDERKRHRDIQH--ILPIL 60
Query: 256 CQECGKTFATSSGLKQH 272
+ + + + L+
Sbjct: 61 EDKVEELLSKNYHLENE 77
Score = 72.9 bits (180), Expect = 6e-16
Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 59 PYKCKYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 111
P++C+ C R+FS S +L H+R H EKPF C +C R F + RH
Sbjct: 3 PFQCRICMRNFSRSDHLTTHIR-THTGEKPFACDICGRKFARSDERKRHRDIQ 54
Score = 72.9 bits (180), Expect = 6e-16
Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 790 PYKCKYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 842
P++C+ C R+FS S +L H+R H EKPF C +C R F + RH
Sbjct: 3 PFQCRICMRNFSRSDHLTTHIR-THTGEKPFACDICGRKFARSDERKRHRDIQ 54
Score = 54.8 bits (133), Expect = 1e-09
Identities = 13/59 (22%), Positives = 25/59 (42%), Gaps = 13/59 (22%)
Query: 279 VKPFRCEVCHKAYTQFSNLCRHKRMHANCRMQI------KCVKCDQSFSTVTSLSKHKR 331
+KPF+C +C + +++ +L H R H C C + F+ +H+
Sbjct: 1 MKPFQCRICMRNFSRSDHLTTHIRTH-------TGEKPFACDICGRKFARSDERKRHRD 52
Score = 34.4 bits (80), Expect = 0.019
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 87 KPFKCPLCDRCFGQQTNLDRHLKKH 111
KPF+C +C R F + +L H++ H
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTH 26
Score = 34.4 bits (80), Expect = 0.019
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 818 KPFKCPLCDRCFGQQTNLDRHLKKH 842
KPF+C +C R F + +L H++ H
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTH 26
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 113 bits (286), Expect = 2e-30
Identities = 36/88 (40%), Positives = 50/88 (56%), Gaps = 3/88 (3%)
Query: 26 KTTKDRYACKYCGKVFPRSANLTRHLRTHTGEQPYKCKY--CERSFSISSNLQRHVRNIH 83
+T CGK + +S++L HLRTHTGE+PY C + C F+ S L RH R H
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYR-KH 60
Query: 84 NKEKPFKCPLCDRCFGQQTNLDRHLKKH 111
+PF+C CDR F + +L H+K+H
Sbjct: 61 TGHRPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 113 bits (286), Expect = 2e-30
Identities = 36/88 (40%), Positives = 50/88 (56%), Gaps = 3/88 (3%)
Query: 757 KTTKDRYACKYCGKVFPRSANLTRHLRTHTGEQPYKCKY--CERSFSISSNLQRHVRNIH 814
+T CGK + +S++L HLRTHTGE+PY C + C F+ S L RH R H
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYR-KH 60
Query: 815 NKEKPFKCPLCDRCFGQQTNLDRHLKKH 842
+PF+C CDR F + +L H+K+H
Sbjct: 61 TGHRPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 90.3 bits (225), Expect = 5e-22
Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 5/88 (5%)
Query: 221 HGRKFPCE--NCTKVFSDPSNLQRHIRTHHVGARQHACQ--ECGKTFATSSGLKQHTHIH 276
C+ C K ++ S+L+ H+RTH G + + C CG FA S L +H H
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAHLRTH-TGEKPYHCDWDGCGWKFARSDELTRHYRKH 60
Query: 277 SSVKPFRCEVCHKAYTQFSNLCRHKRMH 304
+ +PF+C+ C +A+++ +L H + H
Sbjct: 61 TGHRPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 74.9 bits (185), Expect = 1e-16
Identities = 28/86 (32%), Positives = 39/86 (45%), Gaps = 3/86 (3%)
Query: 248 HVGARQHACQECGKTFATSSGLKQHTHIHSSVKPFRC--EVCHKAYTQFSNLCRHKRMHA 305
CGKT+ SS LK H H+ KP+ C + C + + L RH R H
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHT 61
Query: 306 NCRMQIKCVKCDQSFSTVTSLSKHKR 331
R +C KCD++FS L+ H +
Sbjct: 62 GHR-PFQCQKCDRAFSRSDHLALHMK 86
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A {Mus
musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A
1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A*
1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 113 bits (285), Expect = 4e-30
Identities = 37/82 (45%), Positives = 51/82 (62%), Gaps = 3/82 (3%)
Query: 32 YACKY--CGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPF 89
YAC C + F +S +LTRH+R HTG++P++C+ C R+FS S +L H+R H EKPF
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR-THTGEKPF 63
Query: 90 KCPLCDRCFGQQTNLDRHLKKH 111
C +C R F + RH K H
Sbjct: 64 ACDICGRKFARSDERKRHTKIH 85
Score = 113 bits (285), Expect = 4e-30
Identities = 37/82 (45%), Positives = 51/82 (62%), Gaps = 3/82 (3%)
Query: 763 YACKY--CGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPF 820
YAC C + F +S +LTRH+R HTG++P++C+ C R+FS S +L H+R H EKPF
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR-THTGEKPF 63
Query: 821 KCPLCDRCFGQQTNLDRHLKKH 842
C +C R F + RH K H
Sbjct: 64 ACDICGRKFARSDERKRHTKIH 85
Score = 92.9 bits (232), Expect = 6e-23
Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 226 PCENCTKVFSDPSNLQRHIRTHHVGARQHACQECGKTFATSSGLKQHTHIHSSVKPFRCE 285
P E+C + FS +L RHIR H G + C+ C + F+ S L H H+ KPF C+
Sbjct: 8 PVESCDRRFSQSGSLTRHIRIH-TGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACD 66
Query: 286 VCHKAYTQFSNLCRHKRMH 304
+C + + + RH ++H
Sbjct: 67 ICGRKFARSDERKRHTKIH 85
Score = 88.7 bits (221), Expect = 2e-21
Identities = 25/56 (44%), Positives = 37/56 (66%), Gaps = 1/56 (1%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEK 87
+ C+ C + F RS +LT H+RTHTGE+P+ C C R F+ S +RH + IH ++K
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTK-IHLRQK 89
Score = 88.7 bits (221), Expect = 2e-21
Identities = 25/56 (44%), Positives = 37/56 (66%), Gaps = 1/56 (1%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEK 818
+ C+ C + F RS +LT H+RTHTGE+P+ C C R F+ S +RH + IH ++K
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTK-IHLRQK 89
Score = 78.3 bits (194), Expect = 7e-18
Identities = 35/83 (42%), Positives = 44/83 (53%), Gaps = 6/83 (7%)
Query: 198 YRC--ESCSQTFCWRPHLNFHQAQVH-GRK-FPCENCTKVFSDPSNLQRHIRTHHVGARQ 253
Y C ESC + F L H ++H G+K F C C + FS +L HIRT H G +
Sbjct: 5 YACPVESCDRRFSQSGSLTRHI-RIHTGQKPFQCRICMRNFSRSDHLTTHIRT-HTGEKP 62
Query: 254 HACQECGKTFATSSGLKQHTHIH 276
AC CG+ FA S K+HT IH
Sbjct: 63 FACDICGRKFARSDERKRHTKIH 85
Score = 76.0 bits (188), Expect = 5e-17
Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 13/80 (16%)
Query: 258 ECGKTFATSSGLKQHTHIHSSVKPFRCEVCHKAYTQFSNLCRHKRMH------ANCRMQI 311
C + F+ S L +H IH+ KPF+C +C + +++ +L H R H
Sbjct: 11 SCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPF------- 63
Query: 312 KCVKCDQSFSTVTSLSKHKR 331
C C + F+ +H +
Sbjct: 64 ACDICGRKFARSDERKRHTK 83
Score = 69.8 bits (172), Expect = 8e-15
Identities = 25/57 (43%), Positives = 36/57 (63%), Gaps = 3/57 (5%)
Query: 57 EQPYKCKY--CERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 111
E+PY C C+R FS S +L RH+R IH +KPF+C +C R F + +L H++ H
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTH 57
Score = 69.8 bits (172), Expect = 8e-15
Identities = 25/57 (43%), Positives = 36/57 (63%), Gaps = 3/57 (5%)
Query: 788 EQPYKCKY--CERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 842
E+PY C C+R FS S +L RH+R IH +KPF+C +C R F + +L H++ H
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTH 57
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 116 bits (292), Expect = 9e-30
Identities = 52/142 (36%), Positives = 75/142 (52%), Gaps = 17/142 (11%)
Query: 198 YRCESCSQTFCWRPHLNFHQAQVH-GRK-FPCENCTKVFSDPSNLQRHIRTHHVGARQHA 255
Y C C ++F HL HQ + H G K + C C K FSD +L RH RTH G + +
Sbjct: 22 YACPECGKSFSRSDHLAEHQ-RTHTGEKPYKCPECGKSFSDKKDLTRHQRTH-TGEKPYK 79
Query: 256 CQECGKTFATSSGLKQHTHIHSSVKPFRCEVCHKAYTQFSNLCRHKRMHANCRMQI---- 311
C ECGK+F+ + L+ H H+ KP+ C C K+++Q ++L H+R H
Sbjct: 80 CPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTH-------TGEK 132
Query: 312 --KCVKCDQSFSTVTSLSKHKR 331
KC +C +SFS +L H+R
Sbjct: 133 PYKCPECGKSFSREDNLHTHQR 154
Score = 114 bits (287), Expect = 5e-29
Identities = 51/142 (35%), Positives = 78/142 (54%), Gaps = 17/142 (11%)
Query: 198 YRCESCSQTFCWRPHLNFHQAQVH-GRK-FPCENCTKVFSDPSNLQRHIRTHHVGARQHA 255
Y+C C ++F + L HQ + H G K + C C K FS +NL+ H RTH G + +A
Sbjct: 50 YKCPECGKSFSDKKDLTRHQ-RTHTGEKPYKCPECGKSFSQRANLRAHQRTH-TGEKPYA 107
Query: 256 CQECGKTFATSSGLKQHTHIHSSVKPFRCEVCHKAYTQFSNLCRHKRMHANCRMQI---- 311
C ECGK+F+ + L+ H H+ KP++C C K++++ NL H+R H
Sbjct: 108 CPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTH-------TGEK 160
Query: 312 --KCVKCDQSFSTVTSLSKHKR 331
KC +C +SFS +L+ H+R
Sbjct: 161 PYKCPECGKSFSRRDALNVHQR 182
Score = 110 bits (277), Expect = 8e-28
Identities = 43/80 (53%), Positives = 51/80 (63%), Gaps = 1/80 (1%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 91
YAC CGK F RS +L H RTHTGE+PYKC C +SFS +L RH R H EKP+KC
Sbjct: 22 YACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQR-THTGEKPYKC 80
Query: 92 PLCDRCFGQQTNLDRHLKKH 111
P C + F Q+ NL H + H
Sbjct: 81 PECGKSFSQRANLRAHQRTH 100
Score = 110 bits (277), Expect = 8e-28
Identities = 43/80 (53%), Positives = 51/80 (63%), Gaps = 1/80 (1%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 822
YAC CGK F RS +L H RTHTGE+PYKC C +SFS +L RH R H EKP+KC
Sbjct: 22 YACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQR-THTGEKPYKC 80
Query: 823 PLCDRCFGQQTNLDRHLKKH 842
P C + F Q+ NL H + H
Sbjct: 81 PECGKSFSQRANLRAHQRTH 100
Score = 110 bits (277), Expect = 9e-28
Identities = 39/80 (48%), Positives = 50/80 (62%), Gaps = 1/80 (1%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 91
Y C CGK F + ANL H RTHTGE+PY C C +SFS ++L+ H R H EKP+KC
Sbjct: 78 YKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQR-THTGEKPYKC 136
Query: 92 PLCDRCFGQQTNLDRHLKKH 111
P C + F ++ NL H + H
Sbjct: 137 PECGKSFSREDNLHTHQRTH 156
Score = 110 bits (277), Expect = 9e-28
Identities = 39/80 (48%), Positives = 50/80 (62%), Gaps = 1/80 (1%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 822
Y C CGK F + ANL H RTHTGE+PY C C +SFS ++L+ H R H EKP+KC
Sbjct: 78 YKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQR-THTGEKPYKC 136
Query: 823 PLCDRCFGQQTNLDRHLKKH 842
P C + F ++ NL H + H
Sbjct: 137 PECGKSFSREDNLHTHQRTH 156
Score = 107 bits (271), Expect = 5e-27
Identities = 40/80 (50%), Positives = 50/80 (62%), Gaps = 1/80 (1%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 91
YAC CGK F + A+L H RTHTGE+PYKC C +SFS NL H R H EKP+KC
Sbjct: 106 YACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQR-THTGEKPYKC 164
Query: 92 PLCDRCFGQQTNLDRHLKKH 111
P C + F ++ L+ H + H
Sbjct: 165 PECGKSFSRRDALNVHQRTH 184
Score = 107 bits (271), Expect = 5e-27
Identities = 40/80 (50%), Positives = 50/80 (62%), Gaps = 1/80 (1%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 822
YAC CGK F + A+L H RTHTGE+PYKC C +SFS NL H R H EKP+KC
Sbjct: 106 YACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQR-THTGEKPYKC 164
Query: 823 PLCDRCFGQQTNLDRHLKKH 842
P C + F ++ L+ H + H
Sbjct: 165 PECGKSFSRRDALNVHQRTH 184
Score = 106 bits (267), Expect = 2e-26
Identities = 41/134 (30%), Positives = 62/134 (46%), Gaps = 17/134 (12%)
Query: 206 TFCWRPHLNFHQAQVH-GRK-FPCENCTKVFSDPSNLQRHIRTHHVGARQHACQECGKTF 263
+ + G K + C C K FS +L H RTH G + + C ECGK+F
Sbjct: 2 SEFGSSSSVAQA-ALEPGEKPYACPECGKSFSRSDHLAEHQRTH-TGEKPYKCPECGKSF 59
Query: 264 ATSSGLKQHTHIHSSVKPFRCEVCHKAYTQFSNLCRHKRMHANCRMQI------KCVKCD 317
+ L +H H+ KP++C C K+++Q +NL H+R H C +C
Sbjct: 60 SDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTH-------TGEKPYACPECG 112
Query: 318 QSFSTVTSLSKHKR 331
+SFS + L H+R
Sbjct: 113 KSFSQLAHLRAHQR 126
Score = 104 bits (261), Expect = 1e-25
Identities = 40/109 (36%), Positives = 61/109 (55%), Gaps = 4/109 (3%)
Query: 198 YRCESCSQTFCWRPHLNFHQAQVH-GRK-FPCENCTKVFSDPSNLQRHIRTHHVGARQHA 255
Y+C C ++F R +L HQ + H G K + C C K FS ++L+ H RTH G + +
Sbjct: 78 YKCPECGKSFSQRANLRAHQ-RTHTGEKPYACPECGKSFSQLAHLRAHQRTH-TGEKPYK 135
Query: 256 CQECGKTFATSSGLKQHTHIHSSVKPFRCEVCHKAYTQFSNLCRHKRMH 304
C ECGK+F+ L H H+ KP++C C K++++ L H+R H
Sbjct: 136 CPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTH 184
Score = 94.4 bits (236), Expect = 3e-22
Identities = 27/71 (38%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 41 FPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQ 100
S++ GE+PY C C +SFS S +L H R H EKP+KCP C + F
Sbjct: 3 EFGSSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQR-THTGEKPYKCPECGKSFSD 61
Query: 101 QTNLDRHLKKH 111
+ +L RH + H
Sbjct: 62 KKDLTRHQRTH 72
Score = 94.4 bits (236), Expect = 3e-22
Identities = 27/71 (38%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 772 FPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQ 831
S++ GE+PY C C +SFS S +L H R H EKP+KCP C + F
Sbjct: 3 EFGSSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQR-THTGEKPYKCPECGKSFSD 61
Query: 832 QTNLDRHLKKH 842
+ +L RH + H
Sbjct: 62 KKDLTRHQRTH 72
Score = 87.1 bits (217), Expect = 1e-19
Identities = 29/57 (50%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 88
Y C CGK F R NL H RTHTGE+PYKC C +SFS L H R H +K
Sbjct: 134 YKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQR-THTGKKT 189
Score = 87.1 bits (217), Expect = 1e-19
Identities = 29/57 (50%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 819
Y C CGK F R NL H RTHTGE+PYKC C +SFS L H R H +K
Sbjct: 134 YKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQR-THTGKKT 189
Score = 77.9 bits (193), Expect = 2e-16
Identities = 33/86 (38%), Positives = 42/86 (48%), Gaps = 4/86 (4%)
Query: 198 YRCESCSQTFCWRPHLNFHQAQVH-GRK-FPCENCTKVFSDPSNLQRHIRTHHVGARQHA 255
Y C C ++F HL HQ + H G K + C C K FS NL H RTH G + +
Sbjct: 106 YACPECGKSFSQLAHLRAHQ-RTHTGEKPYKCPECGKSFSREDNLHTHQRTH-TGEKPYK 163
Query: 256 CQECGKTFATSSGLKQHTHIHSSVKP 281
C ECGK+F+ L H H+ K
Sbjct: 164 CPECGKSFSRRDALNVHQRTHTGKKT 189
Score = 50.1 bits (121), Expect = 5e-07
Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 68 SFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 111
S SS+ + EKP+ CP C + F + +L H + H
Sbjct: 2 SEFGSSSSVAQAA-LEPGEKPYACPECGKSFSRSDHLAEHQRTH 44
Score = 50.1 bits (121), Expect = 5e-07
Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 799 SFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 842
S SS+ + EKP+ CP C + F + +L H + H
Sbjct: 2 SEFGSSSSVAQAA-LEPGEKPYACPECGKSFSRSDHLAEHQRTH 44
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 111 bits (281), Expect = 1e-29
Identities = 40/97 (41%), Positives = 57/97 (58%), Gaps = 6/97 (6%)
Query: 21 NGSSSKTTKDR-YACK--YCGKVFPRSANLTRHLRTHTGEQPYKCKY--CERSFSISSNL 75
S K R + C C KV+ +S++L HLRTHTGE+PYKC + C+ F+ S L
Sbjct: 4 GSSGPDLEKRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDEL 63
Query: 76 QRHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKHE 112
RH R H KPF+C +C+R F + +L H+K+H+
Sbjct: 64 TRHYR-KHTGAKPFQCGVCNRSFSRSDHLALHMKRHQ 99
Score = 111 bits (281), Expect = 1e-29
Identities = 40/97 (41%), Positives = 57/97 (58%), Gaps = 6/97 (6%)
Query: 752 NGSSSKTTKDR-YACK--YCGKVFPRSANLTRHLRTHTGEQPYKCKY--CERSFSISSNL 806
S K R + C C KV+ +S++L HLRTHTGE+PYKC + C+ F+ S L
Sbjct: 4 GSSGPDLEKRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDEL 63
Query: 807 QRHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKHE 843
RH R H KPF+C +C+R F + +L H+K+H+
Sbjct: 64 TRHYR-KHTGAKPFQCGVCNRSFSRSDHLALHMKRHQ 99
Score = 92.3 bits (230), Expect = 1e-22
Identities = 31/90 (34%), Positives = 51/90 (56%), Gaps = 5/90 (5%)
Query: 221 HGRKFPCE--NCTKVFSDPSNLQRHIRTHHVGARQHAC--QECGKTFATSSGLKQHTHIH 276
R C+ CTKV++ S+L+ H+RTH G + + C + C FA S L +H H
Sbjct: 12 KRRIHYCDYPGCTKVYTKSSHLKAHLRTH-TGEKPYKCTWEGCDWRFARSDELTRHYRKH 70
Query: 277 SSVKPFRCEVCHKAYTQFSNLCRHKRMHAN 306
+ KPF+C VC++++++ +L H + H N
Sbjct: 71 TGAKPFQCGVCNRSFSRSDHLALHMKRHQN 100
Score = 75.7 bits (187), Expect = 8e-17
Identities = 27/100 (27%), Positives = 39/100 (39%), Gaps = 8/100 (8%)
Query: 234 FSDPSNLQRHIRTHHVGARQHACQECGKTFATSSGLKQHTHIHSSVKPFRC--EVCHKAY 291
R H C K + SS LK H H+ KP++C E C +
Sbjct: 3 SGSSGPDLEKRRIH-----YCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRF 57
Query: 292 TQFSNLCRHKRMHANCRMQIKCVKCDQSFSTVTSLSKHKR 331
+ L RH R H + +C C++SFS L+ H +
Sbjct: 58 ARSDELTRHYRKHTGAK-PFQCGVCNRSFSRSDHLALHMK 96
Score = 71.9 bits (177), Expect = 2e-15
Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 7/73 (9%)
Query: 41 FPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC--PLCDRCF 98
S R H + P C + ++ SS+L+ H+R H EKP+KC CD F
Sbjct: 3 SGSSGPDLEKRRIHYCDYP----GCTKVYTKSSHLKAHLR-THTGEKPYKCTWEGCDWRF 57
Query: 99 GQQTNLDRHLKKH 111
+ L RH +KH
Sbjct: 58 ARSDELTRHYRKH 70
Score = 71.9 bits (177), Expect = 2e-15
Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 7/73 (9%)
Query: 772 FPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC--PLCDRCF 829
S R H + P C + ++ SS+L+ H+R H EKP+KC CD F
Sbjct: 3 SGSSGPDLEKRRIHYCDYP----GCTKVYTKSSHLKAHLR-THTGEKPYKCTWEGCDWRF 57
Query: 830 GQQTNLDRHLKKH 842
+ L RH +KH
Sbjct: 58 ARSDELTRHYRKH 70
Score = 42.6 bits (101), Expect = 4e-05
Identities = 20/75 (26%), Positives = 29/75 (38%), Gaps = 13/75 (17%)
Query: 262 TFATSSGLKQHTHIHSSVKPFRCEVCHKAYTQFSNLCRHKRMHA-----NCRMQIKCVKC 316
+ +S + IH P C K YT+ S+L H R H C + C
Sbjct: 2 SSGSSGPDLEKRRIHYCDYPG----CTKVYTKSSHLKAHLRTHTGEKPYKCTWE----GC 53
Query: 317 DQSFSTVTSLSKHKR 331
D F+ L++H R
Sbjct: 54 DWRFARSDELTRHYR 68
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 110 bits (279), Expect = 2e-29
Identities = 35/80 (43%), Positives = 50/80 (62%), Gaps = 1/80 (1%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 91
+ CK CGK F RS+ L+ HL H+ +PY C+YC + F S++++H IH EKP KC
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTF-IHTGEKPHKC 60
Query: 92 PLCDRCFGQQTNLDRHLKKH 111
+C + F Q +NL H +KH
Sbjct: 61 QVCGKAFSQSSNLITHSRKH 80
Score = 110 bits (279), Expect = 2e-29
Identities = 35/80 (43%), Positives = 50/80 (62%), Gaps = 1/80 (1%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 822
+ CK CGK F RS+ L+ HL H+ +PY C+YC + F S++++H IH EKP KC
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTF-IHTGEKPHKC 60
Query: 823 PLCDRCFGQQTNLDRHLKKH 842
+C + F Q +NL H +KH
Sbjct: 61 QVCGKAFSQSSNLITHSRKH 80
Score = 93.6 bits (234), Expect = 2e-23
Identities = 35/78 (44%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 227 CENCTKVFSDPSNLQRHIRTHHVGARQHACQECGKTFATSSGLKQHTHIHSSVKPFRCEV 286
C+ C K F S L H+ H R + CQ CGK F S +K+HT IH+ KP +C+V
Sbjct: 4 CKICGKSFKRSSTLSTHLLIH-SDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQV 62
Query: 287 CHKAYTQFSNLCRHKRMH 304
C KA++Q SNL H R H
Sbjct: 63 CGKAFSQSSNLITHSRKH 80
Score = 79.4 bits (197), Expect = 3e-18
Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 13/82 (15%)
Query: 256 CQECGKTFATSSGLKQHTHIHSSVKPFRCEVCHKAYTQFSNLCRHKRMH------ANCRM 309
C+ CGK+F SS L H IHS +P+ C+ C K + Q S++ +H +H
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPH----- 58
Query: 310 QIKCVKCDQSFSTVTSLSKHKR 331
KC C ++FS ++L H R
Sbjct: 59 --KCQVCGKAFSQSSNLITHSR 78
Score = 75.9 bits (188), Expect = 4e-17
Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 198 YRCESCSQTFCWRPHLNFHQAQVH-GRK-FPCENCTKVFSDPSNLQRHIRTHHVGARQHA 255
+ C+ C ++F L+ H +H + +PC+ C K F S++++H H G + H
Sbjct: 2 FDCKICGKSFKRSSTLSTHL-LIHSDTRPYPCQYCGKRFHQKSDMKKHTFI-HTGEKPHK 59
Query: 256 CQECGKTFATSSGLKQHTHIH 276
CQ CGK F+ SS L H+ H
Sbjct: 60 CQVCGKAFSQSSNLITHSRKH 80
Score = 45.1 bits (108), Expect = 3e-06
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTG 56
+ C+ CGK F +S+NL H R HTG
Sbjct: 58 HKCQVCGKAFSQSSNLITHSRKHTG 82
Score = 45.1 bits (108), Expect = 3e-06
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTG 787
+ C+ CGK F +S+NL H R HTG
Sbjct: 58 HKCQVCGKAFSQSSNLITHSRKHTG 82
Score = 41.6 bits (99), Expect = 5e-05
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 282 FRCEVCHKAYTQFSNLCRHKRMHANCRMQIKCVKCDQSFSTVTSLSKHKR 331
F C++C K++ + S L H +H++ R C C + F + + KH
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTR-PYPCQYCGKRFHQKSDMKKHTF 50
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 113 bits (286), Expect = 4e-29
Identities = 41/146 (28%), Positives = 61/146 (41%), Gaps = 15/146 (10%)
Query: 198 YRCE--SCSQTFCWRPHLNFHQAQVH-GRK-FPCE--NCTKVFSDPSNLQRHIRTHHVGA 251
+ C+ C + F HL H H G K F C+ C F+ +N+++H H
Sbjct: 43 FPCKEEGCEKGFTSLHHLTRHS-LTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFH-NI 100
Query: 252 RQH----ACQECGKTFATSSGLKQHTHIHSSVKPFRC--EVCHKAYTQFSNLCRHKRMHA 305
+ + CGK F + LK H H+ P+ C E C K ++ S L RH+++HA
Sbjct: 101 KICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHA 160
Query: 306 NCRMQIKCVKCDQSFSTVTSLSKHKR 331
+ K C T T KH
Sbjct: 161 GYPCK-KDDSCSFVGKTWTLYLKHVA 185
Score = 105 bits (265), Expect = 4e-26
Identities = 31/87 (35%), Positives = 44/87 (50%), Gaps = 7/87 (8%)
Query: 31 RYACKY--CGKVFPRSANLTRHLRTHTGEQPYKCKY--CERSFSISSNLQRHVRNIHNKE 86
RY C + CG + ++ L HL HTGE+P+ CK CE+ F+ +L RH H E
Sbjct: 12 RYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSL-THTGE 70
Query: 87 KPFKC--PLCDRCFGQQTNLDRHLKKH 111
K F C CD F + N+ +H +
Sbjct: 71 KNFTCDSDGCDLRFTTKANMKKHFNRF 97
Score = 105 bits (265), Expect = 4e-26
Identities = 31/87 (35%), Positives = 44/87 (50%), Gaps = 7/87 (8%)
Query: 762 RYACKY--CGKVFPRSANLTRHLRTHTGEQPYKCKY--CERSFSISSNLQRHVRNIHNKE 817
RY C + CG + ++ L HL HTGE+P+ CK CE+ F+ +L RH H E
Sbjct: 12 RYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSL-THTGE 70
Query: 818 KPFKC--PLCDRCFGQQTNLDRHLKKH 842
K F C CD F + N+ +H +
Sbjct: 71 KNFTCDSDGCDLRFTTKANMKKHFNRF 97
Score = 98.8 bits (247), Expect = 9e-24
Identities = 41/151 (27%), Positives = 62/151 (41%), Gaps = 23/151 (15%)
Query: 198 YRCES--CSQTFCWRPHLNFHQAQVH-GRK-FPCE--NCTKVFSDPSNLQRHIRTHHVGA 251
Y C C + L H H G K FPC+ C K F+ +L RH T H G
Sbjct: 13 YICSFADCGAAYNKNWKLQAHL-CKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLT-HTGE 70
Query: 252 RQHACQE--CGKTFATSSGLKQHTHIHSSVK--PFRCEV--CHKAYTQFSNLCRHKRMHA 305
+ C C F T + +K+H + ++K + C C KA+ + + L H+ H
Sbjct: 71 KNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHT 130
Query: 306 N-----CRMQIKCVKCDQSFSTVTSLSKHKR 331
C CD+ FS + L +H++
Sbjct: 131 QQLPYEC----PHEGCDKRFSLPSRLKRHEK 157
Score = 95.0 bits (237), Expect = 2e-22
Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 9/88 (10%)
Query: 32 YACK--YCGKVFPRSANLTRHLRTHTGEQ--PYKCKY--CERSFSISSNLQRHVRNIHNK 85
+ C C F AN+ +H + Y C + C ++F + L+ H H +
Sbjct: 73 FTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQF-SHTQ 131
Query: 86 EKPFKC--PLCDRCFGQQTNLDRHLKKH 111
+ P++C CD+ F + L RH K H
Sbjct: 132 QLPYECPHEGCDKRFSLPSRLKRHEKVH 159
Score = 95.0 bits (237), Expect = 2e-22
Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 9/88 (10%)
Query: 763 YACK--YCGKVFPRSANLTRHLRTHTGEQ--PYKCKY--CERSFSISSNLQRHVRNIHNK 816
+ C C F AN+ +H + Y C + C ++F + L+ H H +
Sbjct: 73 FTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQF-SHTQ 131
Query: 817 EKPFKC--PLCDRCFGQQTNLDRHLKKH 842
+ P++C CD+ F + L RH K H
Sbjct: 132 QLPYECPHEGCDKRFSLPSRLKRHEKVH 159
Score = 92.3 bits (230), Expect = 1e-21
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 5/83 (6%)
Query: 32 YACKY--CGKVFPRSANLTRHLRTHTGEQPYKCK--YCERSFSISSNLQRHVRNIHNKEK 87
Y C + CGK F + L H +HT + PY+C C++ FS+ S L+RH + +H
Sbjct: 105 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEK-VHAGYP 163
Query: 88 PFKCPLCDRCFGQQTNLDRHLKK 110
K C T +H+ +
Sbjct: 164 CKKDDSCSFVGKTWTLYLKHVAE 186
Score = 92.3 bits (230), Expect = 1e-21
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 5/83 (6%)
Query: 763 YACKY--CGKVFPRSANLTRHLRTHTGEQPYKCK--YCERSFSISSNLQRHVRNIHNKEK 818
Y C + CGK F + L H +HT + PY+C C++ FS+ S L+RH + +H
Sbjct: 105 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEK-VHAGYP 163
Query: 819 PFKCPLCDRCFGQQTNLDRHLKK 841
K C T +H+ +
Sbjct: 164 CKKDDSCSFVGKTWTLYLKHVAE 186
Score = 91.9 bits (229), Expect = 2e-21
Identities = 29/127 (22%), Positives = 49/127 (38%), Gaps = 13/127 (10%)
Query: 216 HQAQVH-GRK-FPCEN--CTKVFSDPSNLQRHIRTHHVGARQHACQE--CGKTFATSSGL 269
+A + K + C C ++ LQ H+ H G + C+E C K F + L
Sbjct: 3 EKA-LPVVYKRYICSFADCGAAYNKNWKLQAHLCK-HTGEKPFPCKEEGCEKGFTSLHHL 60
Query: 270 KQHTHIHSSVKPFRCE--VCHKAYTQFSNLCRHKRMH-ANCRMQIKCVK--CDQSFSTVT 324
+H+ H+ K F C+ C +T +N+ +H C C ++F
Sbjct: 61 TRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHN 120
Query: 325 SLSKHKR 331
L H+
Sbjct: 121 QLKVHQF 127
Score = 78.8 bits (195), Expect = 6e-17
Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 5/66 (7%)
Query: 50 HLRTHTGEQPYKCKY--CERSFSISSNLQRHVRNIHNKEKPFKC--PLCDRCFGQQTNLD 105
+ Y C + C +++ + LQ H+ H EKPF C C++ F +L
Sbjct: 3 EKALPVVYKRYICSFADCGAAYNKNWKLQAHLC-KHTGEKPFPCKEEGCEKGFTSLHHLT 61
Query: 106 RHLKKH 111
RH H
Sbjct: 62 RHSLTH 67
Score = 78.8 bits (195), Expect = 6e-17
Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 5/66 (7%)
Query: 781 HLRTHTGEQPYKCKY--CERSFSISSNLQRHVRNIHNKEKPFKC--PLCDRCFGQQTNLD 836
+ Y C + C +++ + LQ H+ H EKPF C C++ F +L
Sbjct: 3 EKALPVVYKRYICSFADCGAAYNKNWKLQAHLC-KHTGEKPFPCKEEGCEKGFTSLHHLT 61
Query: 837 RHLKKH 842
RH H
Sbjct: 62 RHSLTH 67
Score = 71.1 bits (175), Expect = 3e-14
Identities = 15/55 (27%), Positives = 19/55 (34%), Gaps = 2/55 (3%)
Query: 32 YACK--YCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHN 84
Y C C K F + L RH + H G K C + +HV H
Sbjct: 135 YECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAECHQ 189
Score = 71.1 bits (175), Expect = 3e-14
Identities = 15/55 (27%), Positives = 19/55 (34%), Gaps = 2/55 (3%)
Query: 763 YACK--YCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHN 815
Y C C K F + L RH + H G K C + +HV H
Sbjct: 135 YECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAECHQ 189
Score = 61.8 bits (151), Expect = 5e-11
Identities = 28/96 (29%), Positives = 40/96 (41%), Gaps = 13/96 (13%)
Query: 189 TGHRYPPDQYRC--ESCSQTFCWRPHLNFHQAQVH-GRK-FPC--ENCTKVFSDPSNLQR 242
+ Y C E+C + F L HQ H + + C E C K FS PS L+R
Sbjct: 98 HNIKICV--YVCHFENCGKAFKKHNQLKVHQ-FSHTQQLPYECPHEGCDKRFSLPSRLKR 154
Query: 243 HIRTH--HVGARQHACQECGKTFATSSGLKQHTHIH 276
H + H + + +C GKT+ + LK H
Sbjct: 155 HEKVHAGYPCKKDDSCSFVGKTW--TLYLKHVAECH 188
Score = 51.4 bits (124), Expect = 2e-07
Identities = 14/68 (20%), Positives = 24/68 (35%), Gaps = 11/68 (16%)
Query: 271 QHTHIHSSVKPFRCEV--CHKAYTQFSNLCRHKRMHA-----NCRMQIKCVKCDQSFSTV 323
+ K + C C AY + L H H C K C++ F+++
Sbjct: 2 GEKALPVVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPC----KEEGCEKGFTSL 57
Query: 324 TSLSKHKR 331
L++H
Sbjct: 58 HHLTRHSL 65
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 109 bits (275), Expect = 1e-28
Identities = 39/97 (40%), Positives = 51/97 (52%), Gaps = 8/97 (8%)
Query: 22 GSSSKTTKDR-------YACKYCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSN 74
GSS + + CK+CG+ F +S NL H RTHT E+PY C C ++F +
Sbjct: 1 GSSGSSGGRLPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDH 60
Query: 75 LQRHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 111
L+ H IH+KEKPFKC C + F Q L H H
Sbjct: 61 LRDHRY-IHSKEKPFKCQECGKGFCQSRTLAVHKTLH 96
Score = 109 bits (275), Expect = 1e-28
Identities = 39/97 (40%), Positives = 51/97 (52%), Gaps = 8/97 (8%)
Query: 753 GSSSKTTKDR-------YACKYCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSN 805
GSS + + CK+CG+ F +S NL H RTHT E+PY C C ++F +
Sbjct: 1 GSSGSSGGRLPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDH 60
Query: 806 LQRHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 842
L+ H IH+KEKPFKC C + F Q L H H
Sbjct: 61 LRDHRY-IHSKEKPFKCQECGKGFCQSRTLAVHKTLH 96
Score = 96.3 bits (241), Expect = 7e-24
Identities = 32/95 (33%), Positives = 45/95 (47%), Gaps = 4/95 (4%)
Query: 212 HLNFHQAQVH-GRK-FPCENCTKVFSDPSNLQRHIRTHHVGARQHACQECGKTFATSSGL 269
+ + +K F C+ C + F+ NL H RTH R + C C K F L
Sbjct: 4 GSSGGR-LPSKTKKEFICKFCGRHFTKSYNLLIHERTH-TDERPYTCDICHKAFRRQDHL 61
Query: 270 KQHTHIHSSVKPFRCEVCHKAYTQFSNLCRHKRMH 304
+ H +IHS KPF+C+ C K + Q L HK +H
Sbjct: 62 RDHRYIHSKEKPFKCQECGKGFCQSRTLAVHKTLH 96
Score = 95.6 bits (239), Expect = 1e-23
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 91
Y C C K F R +L H H+ E+P+KC+ C + F S L H +H +
Sbjct: 46 YTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVHKT-LHMQTSSPTA 104
Score = 95.6 bits (239), Expect = 1e-23
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 822
Y C C K F R +L H H+ E+P+KC+ C + F S L H +H +
Sbjct: 46 YTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVHKT-LHMQTSSPTA 104
Score = 88.6 bits (221), Expect = 3e-21
Identities = 25/100 (25%), Positives = 43/100 (43%), Gaps = 14/100 (14%)
Query: 238 SNLQRHIRTHHVGARQHACQECGKTFATSSGLKQHTHIHSSVKPFRCEVCHKAYTQFSNL 297
S ++ C+ CG+ F S L H H+ +P+ C++CHKA+ + +L
Sbjct: 3 SGSSGGRLPS-KTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHL 61
Query: 298 CRHKRMHANCRMQI------KCVKCDQSFSTVTSLSKHKR 331
H+ +H KC +C + F +L+ HK
Sbjct: 62 RDHRYIH-------SKEKPFKCQECGKGFCQSRTLAVHKT 94
Score = 83.3 bits (207), Expect = 2e-19
Identities = 24/89 (26%), Positives = 37/89 (41%), Gaps = 4/89 (4%)
Query: 198 YRCESCSQTFCWRPHLNFHQAQVH-GRK-FPCENCTKVFSDPSNLQRHIRTHHVGARQHA 255
+ C+ C + F +L H+ + H + + C+ C K F +L+ H H +
Sbjct: 18 FICKFCGRHFTKSYNLLIHE-RTHTDERPYTCDICHKAFRRQDHLRDHRYIH-SKEKPFK 75
Query: 256 CQECGKTFATSSGLKQHTHIHSSVKPFRC 284
CQECGK F S L H +H
Sbjct: 76 CQECGKGFCQSRTLAVHKTLHMQTSSPTA 104
Score = 61.7 bits (151), Expect = 8e-12
Identities = 18/72 (25%), Positives = 27/72 (37%), Gaps = 13/72 (18%)
Query: 266 SSGLKQHTHIHSSVKPFRCEVCHKAYTQFSNLCRHKRMHANCRMQI------KCVKCDQS 319
SSG + K F C+ C + +T+ NL H+R H C C ++
Sbjct: 2 SSGSSGGRLPSKTKKEFICKFCGRHFTKSYNLLIHERTH-------TDERPYTCDICHKA 54
Query: 320 FSTVTSLSKHKR 331
F L H+
Sbjct: 55 FRRQDHLRDHRY 66
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 108 bits (272), Expect = 2e-28
Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 3/81 (3%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKE--KPF 89
AC+ CGK+F +L RH +H+GE+PY C C F + HVR H+ KP+
Sbjct: 8 VACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVR-SHDGSVGKPY 66
Query: 90 KCPLCDRCFGQQTNLDRHLKK 110
C C + F + +L+ H+K+
Sbjct: 67 ICQSCGKGFSRPDHLNGHIKQ 87
Score = 108 bits (272), Expect = 2e-28
Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 3/81 (3%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKE--KPF 820
AC+ CGK+F +L RH +H+GE+PY C C F + HVR H+ KP+
Sbjct: 8 VACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVR-SHDGSVGKPY 66
Query: 821 KCPLCDRCFGQQTNLDRHLKK 841
C C + F + +L+ H+K+
Sbjct: 67 ICQSCGKGFSRPDHLNGHIKQ 87
Score = 87.2 bits (217), Expect = 7e-21
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 4/83 (4%)
Query: 225 FPCENCTKVFSDPSNLQRHIRTHHVGARQHACQECGKTFATSSGLKQHTHIHS--SVKPF 282
CE C K+F D +L RH +H G + ++C CG F + H H KP+
Sbjct: 8 VACEICGKIFRDVYHLNRHKLSH-SGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPY 66
Query: 283 RCEVCHKAYTQFSNLCRH-KRMH 304
C+ C K +++ +L H K++H
Sbjct: 67 ICQSCGKGFSRPDHLNGHIKQVH 89
Score = 85.2 bits (212), Expect = 3e-20
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQ--PYKCKYCERSFSISSNLQRHVRNIHNKEK 87
Y+C CG F R ++ H+R+H G PY C+ C + FS +L H++ +H+
Sbjct: 36 YSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVHSGPS 93
Score = 85.2 bits (212), Expect = 3e-20
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQ--PYKCKYCERSFSISSNLQRHVRNIHNKEK 818
Y+C CG F R ++ H+R+H G PY C+ C + FS +L H++ +H+
Sbjct: 36 YSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVHSGPS 93
Score = 78.7 bits (195), Expect = 6e-18
Identities = 25/85 (29%), Positives = 36/85 (42%), Gaps = 1/85 (1%)
Query: 248 HVGARQHACQECGKTFATSSGLKQHTHIHSSVKPFRCEVCHKAYTQFSNLCRHKRMHANC 307
G+ AC+ CGK F L +H HS KP+ C VC + + + H R H
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGS 61
Query: 308 RMQ-IKCVKCDQSFSTVTSLSKHKR 331
+ C C + FS L+ H +
Sbjct: 62 VGKPYICQSCGKGFSRPDHLNGHIK 86
Score = 78.7 bits (195), Expect = 6e-18
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 54 HTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 111
+G C+ C + F +L RH H+ EKP+ CP+C F ++ + H++ H
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRHKL-SHSGEKPYSCPVCGLRFKRKDRMSYHVRSH 58
Score = 78.7 bits (195), Expect = 6e-18
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 785 HTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 842
+G C+ C + F +L RH H+ EKP+ CP+C F ++ + H++ H
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRHKL-SHSGEKPYSCPVCGLRFKRKDRMSYHVRSH 58
Score = 74.4 bits (184), Expect = 2e-16
Identities = 28/85 (32%), Positives = 38/85 (44%), Gaps = 7/85 (8%)
Query: 198 YRCESCSQTFCWRPHLNFHQAQVH-GRK-FPCENCTKVFSDPSNLQRHIRTHHVGARQ-- 253
CE C + F HLN H+ H G K + C C F + H+R+ H G+
Sbjct: 8 VACEICGKIFRDVYHLNRHK-LSHSGEKPYSCPVCGLRFKRKDRMSYHVRS-HDGSVGKP 65
Query: 254 HACQECGKTFATSSGLKQHTH-IHS 277
+ CQ CGK F+ L H +HS
Sbjct: 66 YICQSCGKGFSRPDHLNGHIKQVHS 90
Score = 48.6 bits (117), Expect = 2e-07
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
Query: 198 YRCESCSQTFCWRPHLNFHQAQVH----GRKFPCENCTKVFSDPSNLQRHIRTHHVG 250
Y C C F + +++H + H G+ + C++C K FS P +L HI+ H G
Sbjct: 36 YSCPVCGLRFKRKDRMSYHV-RSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVHSG 91
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 109 bits (275), Expect = 2e-28
Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRN--IHNKEKPF 89
C C K F L H R HTGE+P++C C + + NL H ++ E+ F
Sbjct: 8 VECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVF 67
Query: 90 KCPLCDRCFGQQTNLDRHLKKH 111
C +C F ++ L H+ H
Sbjct: 68 TCSVCQETFRRRMELRLHMVSH 89
Score = 109 bits (275), Expect = 2e-28
Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRN--IHNKEKPF 820
C C K F L H R HTGE+P++C C + + NL H ++ E+ F
Sbjct: 8 VECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVF 67
Query: 821 KCPLCDRCFGQQTNLDRHLKKH 842
C +C F ++ L H+ H
Sbjct: 68 TCSVCQETFRRRMELRLHMVSH 89
Score = 103 bits (259), Expect = 3e-26
Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 4/79 (5%)
Query: 32 YACKYCGKVFPRSANLTRHLR---THTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 88
+ C CGK + R NL H + EQ + C C+ +F L+ H+ H E P
Sbjct: 36 FECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMV-SHTGEMP 94
Query: 89 FKCPLCDRCFGQQTNLDRH 107
+KC C + F Q+ +L H
Sbjct: 95 YKCSSCSQQFMQKKDLQSH 113
Score = 103 bits (259), Expect = 3e-26
Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 4/79 (5%)
Query: 763 YACKYCGKVFPRSANLTRHLR---THTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 819
+ C CGK + R NL H + EQ + C C+ +F L+ H+ H E P
Sbjct: 36 FECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMV-SHTGEMP 94
Query: 820 FKCPLCDRCFGQQTNLDRH 838
+KC C + F Q+ +L H
Sbjct: 95 YKCSSCSQQFMQKKDLQSH 113
Score = 97.6 bits (244), Expect = 4e-24
Identities = 29/112 (25%), Positives = 48/112 (42%), Gaps = 6/112 (5%)
Query: 198 YRCESCSQTFCWRPHLNFHQAQVH-GRK-FPCENCTKVFSDPSNLQRHIRTH--HVGARQ 253
C +C + F + +L H + H G K F C C K + NL H + + +
Sbjct: 8 VECPTCHKKFLSKYYLKVHN-RKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQV 66
Query: 254 HACQECGKTFATSSGLKQHTHIHSSVKPFRCEVCHKAYTQFSNLCRHK-RMH 304
C C +TF L+ H H+ P++C C + + Q +L H ++H
Sbjct: 67 FTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLH 118
Score = 91.8 bits (229), Expect = 4e-22
Identities = 31/110 (28%), Positives = 42/110 (38%), Gaps = 5/110 (4%)
Query: 225 FPCENCTKVFSDPSNLQRHIRTHHVGARQHACQECGKTFATSSGLKQH---THIHSSVKP 281
C C K F L+ H R H G + C +CGK + L +H ++ S +
Sbjct: 8 VECPTCHKKFLSKYYLKVHNRKH-TGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQV 66
Query: 282 FRCEVCHKAYTQFSNLCRHKRMHANCRMQIKCVKCDQSFSTVTSLSKHKR 331
F C VC + + + L H H M KC C Q F L H
Sbjct: 67 FTCSVCQETFRRRMELRLHMVSHTG-EMPYKCSSCSQQFMQKKDLQSHMI 115
Score = 84.9 bits (211), Expect = 1e-19
Identities = 20/56 (35%), Positives = 29/56 (51%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEK 87
+ C C + F R L H+ +HTGE PYKC C + F +LQ H+ +H+
Sbjct: 67 FTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSGPS 122
Score = 84.9 bits (211), Expect = 1e-19
Identities = 20/56 (35%), Positives = 29/56 (51%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEK 818
+ C C + F R L H+ +HTGE PYKC C + F +LQ H+ +H+
Sbjct: 67 FTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSGPS 122
Score = 78.3 bits (194), Expect = 2e-17
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 54 HTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTNLDRH 107
+G +C C + F L+ H R H EKPF+CP C +C+ ++ NL H
Sbjct: 2 SSGSSGVECPTCHKKFLSKYYLKVHNR-KHTGEKPFECPKCGKCYFRKENLLEH 54
Score = 78.3 bits (194), Expect = 2e-17
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 785 HTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTNLDRH 838
+G +C C + F L+ H R H EKPF+CP C +C+ ++ NL H
Sbjct: 2 SSGSSGVECPTCHKKFLSKYYLKVHNR-KHTGEKPFECPKCGKCYFRKENLLEH 54
Score = 76.0 bits (188), Expect = 1e-16
Identities = 24/91 (26%), Positives = 33/91 (36%), Gaps = 12/91 (13%)
Query: 248 HVGARQHACQECGKTFATSSGLKQHTHIHSSVKPFRCEVCHKAYTQFSNLCRHKRMHANC 307
G+ C C K F + LK H H+ KPF C C K Y + NL H+ +
Sbjct: 2 SSGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARN--- 58
Query: 308 RMQI-------KCVKCDQSFSTVTSLSKHKR 331
+ C C ++F L H
Sbjct: 59 --CMNRSEQVFTCSVCQETFRRRMELRLHMV 87
Score = 38.3 bits (90), Expect = 0.002
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 83 HNKEKPFKCPLCDRCFGQQTNLDRHLKKH 111
+ +CP C + F + L H +KH
Sbjct: 2 SSGSSGVECPTCHKKFLSKYYLKVHNRKH 30
Score = 38.3 bits (90), Expect = 0.002
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 814 HNKEKPFKCPLCDRCFGQQTNLDRHLKKH 842
+ +CP C + F + L H +KH
Sbjct: 2 SSGSSGVECPTCHKKFLSKYYLKVHNRKH 30
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 108 bits (272), Expect = 5e-28
Identities = 36/84 (42%), Positives = 46/84 (54%), Gaps = 5/84 (5%)
Query: 32 YACKY--CGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPF 89
Y C + C + F RS L RH R HTG +P++CK C+R FS S +L+ H R H EKPF
Sbjct: 37 YQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTR-THTGEKPF 95
Query: 90 KCPL--CDRCFGQQTNLDRHLKKH 111
C C + F + L RH H
Sbjct: 96 SCRWPSCQKKFARSDELVRHHNMH 119
Score = 108 bits (272), Expect = 5e-28
Identities = 36/84 (42%), Positives = 46/84 (54%), Gaps = 5/84 (5%)
Query: 763 YACKY--CGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPF 820
Y C + C + F RS L RH R HTG +P++CK C+R FS S +L+ H R H EKPF
Sbjct: 37 YQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTR-THTGEKPF 95
Query: 821 KCPL--CDRCFGQQTNLDRHLKKH 842
C C + F + L RH H
Sbjct: 96 SCRWPSCQKKFARSDELVRHHNMH 119
Score = 108 bits (272), Expect = 6e-28
Identities = 35/84 (41%), Positives = 48/84 (57%), Gaps = 5/84 (5%)
Query: 32 YACKY--CGKVFPRSANLTRHLRTHTGEQPYKCKY--CERSFSISSNLQRHVRNIHNKEK 87
+ C Y C K + + ++L H R HTGE+PY+C + CER FS S L+RH R H K
Sbjct: 7 FMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQR-RHTGVK 65
Query: 88 PFKCPLCDRCFGQQTNLDRHLKKH 111
PF+C C R F + +L H + H
Sbjct: 66 PFQCKTCQRKFSRSDHLKTHTRTH 89
Score = 108 bits (272), Expect = 6e-28
Identities = 35/84 (41%), Positives = 48/84 (57%), Gaps = 5/84 (5%)
Query: 763 YACKY--CGKVFPRSANLTRHLRTHTGEQPYKCKY--CERSFSISSNLQRHVRNIHNKEK 818
+ C Y C K + + ++L H R HTGE+PY+C + CER FS S L+RH R H K
Sbjct: 7 FMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQR-RHTGVK 65
Query: 819 PFKCPLCDRCFGQQTNLDRHLKKH 842
PF+C C R F + +L H + H
Sbjct: 66 PFQCKTCQRKFSRSDHLKTHTRTH 89
Score = 105 bits (265), Expect = 5e-27
Identities = 38/115 (33%), Positives = 54/115 (46%), Gaps = 10/115 (8%)
Query: 198 YRCE--SCSQTFCWRPHLNFHQAQVH-GRK-FPCEN--CTKVFSDPSNLQRHIRTHHVGA 251
+ C C++ + HL H + H G K + C+ C + FS L+RH R H G
Sbjct: 7 FMCAYPGCNKRYFKLSHLQMHS-RKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRH-TGV 64
Query: 252 RQHACQECGKTFATSSGLKQHTHIHSSVKPFRCEV--CHKAYTQFSNLCRHKRMH 304
+ C+ C + F+ S LK HT H+ KPF C C K + + L RH MH
Sbjct: 65 KPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 99.5 bits (249), Expect = 7e-25
Identities = 34/116 (29%), Positives = 56/116 (48%), Gaps = 14/116 (12%)
Query: 225 FPCE--NCTKVFSDPSNLQRHIRTHHVGARQHAC--QECGKTFATSSGLKQHTHIHSSVK 280
F C C K + S+LQ H R H G + + C ++C + F+ S LK+H H+ VK
Sbjct: 7 FMCAYPGCNKRYFKLSHLQMHSRKH-TGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVK 65
Query: 281 PFRCEVCHKAYTQFSNLCRHKRMHA-----NCRMQIKCVKCDQSFSTVTSLSKHKR 331
PF+C+ C + +++ +L H R H +C + C + F+ L +H
Sbjct: 66 PFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSC----RWPSCQKKFARSDELVRHHN 117
Score = 69.9 bits (172), Expect = 1e-14
Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 5/61 (8%)
Query: 55 TGEQPYKCKY--CERSFSISSNLQRHVRNIHNKEKPFKCPL--CDRCFGQQTNLDRHLKK 110
+ ++P+ C Y C + + S+LQ H R H EKP++C C+R F + L RH ++
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMHSR-KHTGEKPYQCDFKDCERRFSRSDQLKRHQRR 60
Query: 111 H 111
H
Sbjct: 61 H 61
Score = 69.9 bits (172), Expect = 1e-14
Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 5/61 (8%)
Query: 786 TGEQPYKCKY--CERSFSISSNLQRHVRNIHNKEKPFKCPL--CDRCFGQQTNLDRHLKK 841
+ ++P+ C Y C + + S+LQ H R H EKP++C C+R F + L RH ++
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMHSR-KHTGEKPYQCDFKDCERRFSRSDQLKRHQRR 60
Query: 842 H 842
H
Sbjct: 61 H 61
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 108 bits (272), Expect = 5e-28
Identities = 36/84 (42%), Positives = 51/84 (60%), Gaps = 5/84 (5%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQPYKCKY--CERSFSISSNLQRHVRNIHNKEKPF 89
+ C CGK F S+ L RH HTGE+P++C + C + FS+ NL+ HVR IH ++P+
Sbjct: 35 HVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVR-IHTGDRPY 93
Query: 90 KCPL--CDRCFGQQTNLDRHLKKH 111
CP C++ F Q TNL H+ H
Sbjct: 94 VCPFDGCNKKFAQSTNLKSHILTH 117
Score = 108 bits (272), Expect = 5e-28
Identities = 36/84 (42%), Positives = 51/84 (60%), Gaps = 5/84 (5%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQPYKCKY--CERSFSISSNLQRHVRNIHNKEKPF 820
+ C CGK F S+ L RH HTGE+P++C + C + FS+ NL+ HVR IH ++P+
Sbjct: 35 HVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVR-IHTGDRPY 93
Query: 821 KCPL--CDRCFGQQTNLDRHLKKH 842
CP C++ F Q TNL H+ H
Sbjct: 94 VCPFDGCNKKFAQSTNLKSHILTH 117
Score = 102 bits (256), Expect = 9e-26
Identities = 34/114 (29%), Positives = 51/114 (44%), Gaps = 9/114 (7%)
Query: 198 YRC--ESCSQTFCWRPHLNFHQAQVHGRK-FPCENCTKVFSDPSNLQRHIRTHHVGARQH 254
C + C++ F + H HG + C C K F + S L+RH H G +
Sbjct: 6 IACPHKGCTKMFRDNSAMRKHL-HTHGPRVHVCAECGKAFVESSKLKRHQLVH-TGEKPF 63
Query: 255 AC--QECGKTFATSSGLKQHTHIHSSVKPFRCEV--CHKAYTQFSNLCRHKRMH 304
C + CGK F+ L+ H IH+ +P+ C C+K + Q +NL H H
Sbjct: 64 QCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 117
Score = 98.0 bits (245), Expect = 2e-24
Identities = 42/113 (37%), Positives = 59/113 (52%), Gaps = 13/113 (11%)
Query: 226 PCENCTKVFSDPSNLQRHIRTHHVGARQHACQECGKTFATSSGLKQHTHIHSSVKPFRCE 285
P + CTK+F D S +++H+ TH G R H C ECGK F SS LK+H +H+ KPF+C
Sbjct: 9 PHKGCTKMFRDNSAMRKHLHTH--GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCT 66
Query: 286 V--CHKAYTQFSNLCRHKRMHA-----NCRMQIKCVKCDQSFSTVTSLSKHKR 331
C K ++ NL H R+H C C++ F+ T+L H
Sbjct: 67 FEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFD----GCNKKFAQSTNLKSHIL 115
Score = 97.2 bits (243), Expect = 5e-24
Identities = 30/84 (35%), Positives = 46/84 (54%), Gaps = 6/84 (7%)
Query: 32 YACKY--CGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPF 89
AC + C K+F ++ + +HL TH G + + C C ++F SS L+RH +H EKPF
Sbjct: 6 IACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQL-VHTGEKPF 63
Query: 90 KCPL--CDRCFGQQTNLDRHLKKH 111
+C C + F NL H++ H
Sbjct: 64 QCTFEGCGKRFSLDFNLRTHVRIH 87
Score = 97.2 bits (243), Expect = 5e-24
Identities = 30/84 (35%), Positives = 46/84 (54%), Gaps = 6/84 (7%)
Query: 763 YACKY--CGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPF 820
AC + C K+F ++ + +HL TH G + + C C ++F SS L+RH +H EKPF
Sbjct: 6 IACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQL-VHTGEKPF 63
Query: 821 KCPL--CDRCFGQQTNLDRHLKKH 842
+C C + F NL H++ H
Sbjct: 64 QCTFEGCGKRFSLDFNLRTHVRIH 87
Score = 86.4 bits (215), Expect = 3e-20
Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 5/63 (7%)
Query: 32 YACKY--CGKVFPRSANLTRHLRTHTGEQPYKCKY--CERSFSISSNLQRHVRNIHNKEK 87
+ C + CGK F NL H+R HTG++PY C + C + F+ S+NL+ H+ H K K
Sbjct: 63 FQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHIL-THAKAK 121
Query: 88 PFK 90
+
Sbjct: 122 NNQ 124
Score = 86.4 bits (215), Expect = 3e-20
Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 5/63 (7%)
Query: 763 YACKY--CGKVFPRSANLTRHLRTHTGEQPYKCKY--CERSFSISSNLQRHVRNIHNKEK 818
+ C + CGK F NL H+R HTG++PY C + C + F+ S+NL+ H+ H K K
Sbjct: 63 FQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHIL-THAKAK 121
Query: 819 PFK 821
+
Sbjct: 122 NNQ 124
Score = 77.2 bits (191), Expect = 5e-17
Identities = 35/91 (38%), Positives = 42/91 (46%), Gaps = 8/91 (8%)
Query: 198 YRCESCSQTFCWRPHLNFHQAQVH-GRK-FPC--ENCTKVFSDPSNLQRHIRTHHVGARQ 253
+ C C + F L HQ VH G K F C E C K FS NL+ H+R H G R
Sbjct: 35 HVCAECGKAFVESSKLKRHQ-LVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIH-TGDRP 92
Query: 254 HAC--QECGKTFATSSGLKQHTHIHSSVKPF 282
+ C C K FA S+ LK H H+ K
Sbjct: 93 YVCPFDGCNKKFAQSTNLKSHILTHAKAKNN 123
Score = 61.0 bits (149), Expect = 2e-11
Identities = 13/57 (22%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
Query: 57 EQPYKCKY--CERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 111
+ C + C + F +S +++H+ H + C C + F + + L RH H
Sbjct: 3 PRTIACPHKGCTKMFRDNSAMRKHLH-THG-PRVHVCAECGKAFVESSKLKRHQLVH 57
Score = 61.0 bits (149), Expect = 2e-11
Identities = 13/57 (22%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
Query: 788 EQPYKCKY--CERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 842
+ C + C + F +S +++H+ H + C C + F + + L RH H
Sbjct: 3 PRTIACPHKGCTKMFRDNSAMRKHLH-THG-PRVHVCAECGKAFVESSKLKRHQLVH 57
Score = 32.5 bits (75), Expect = 0.22
Identities = 7/29 (24%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
Query: 85 KEKPFKCPL--CDRCFGQQTNLDRHLKKH 111
+ + CP C + F + + +HL H
Sbjct: 2 EPRTIACPHKGCTKMFRDNSAMRKHLHTH 30
Score = 32.5 bits (75), Expect = 0.22
Identities = 7/29 (24%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
Query: 816 KEKPFKCPL--CDRCFGQQTNLDRHLKKH 842
+ + CP C + F + + +HL H
Sbjct: 2 EPRTIACPHKGCTKMFRDNSAMRKHLHTH 30
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 109 bits (274), Expect = 8e-28
Identities = 45/153 (29%), Positives = 67/153 (43%), Gaps = 24/153 (15%)
Query: 198 YRCESCSQTFCWRPHLNFHQAQVH---GRK-FPCENC-----TKVFSDPSNLQRHIRTHH 248
R + CSQ F + L H H RK F C + F L H+R H
Sbjct: 4 CRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRH- 62
Query: 249 VGARQHAC--QECGKTFATSSGLKQHTHIHSSVKPFRCE--VCHKAYTQFSNLCRHK-RM 303
G + H C + C K+++ LK H H+ KP+ CE C KA++ S+ +H+ R
Sbjct: 63 TGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRT 122
Query: 304 HAN-----CRMQIKCVKCDQSFSTVTSLSKHKR 331
H+N C K C + ++ +SL KH +
Sbjct: 123 HSNEKPYVC----KLPGCTKRYTDPSSLRKHVK 151
Score = 104 bits (263), Expect = 2e-26
Identities = 31/86 (36%), Positives = 51/86 (59%), Gaps = 6/86 (6%)
Query: 32 YACKY--CGKVFPRSANLTRHLRTHTGEQPYKCKY--CERSFSISSNLQRHVRNIHNKEK 87
+ C + C K + R NL HLR+HTGE+PY C++ C ++FS +S+ +H H+ EK
Sbjct: 68 HKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEK 127
Query: 88 PFKC--PLCDRCFGQQTNLDRHLKKH 111
P+ C P C + + ++L +H+K
Sbjct: 128 PYVCKLPGCTKRYTDPSSLRKHVKTV 153
Score = 104 bits (263), Expect = 2e-26
Identities = 31/86 (36%), Positives = 51/86 (59%), Gaps = 6/86 (6%)
Query: 763 YACKY--CGKVFPRSANLTRHLRTHTGEQPYKCKY--CERSFSISSNLQRHVRNIHNKEK 818
+ C + C K + R NL HLR+HTGE+PY C++ C ++FS +S+ +H H+ EK
Sbjct: 68 HKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEK 127
Query: 819 PFKC--PLCDRCFGQQTNLDRHLKKH 842
P+ C P C + + ++L +H+K
Sbjct: 128 PYVCKLPGCTKRYTDPSSLRKHVKTV 153
Score = 102 bits (256), Expect = 2e-25
Identities = 39/138 (28%), Positives = 66/138 (47%), Gaps = 17/138 (12%)
Query: 182 ELEDHLITGHRYPPDQ-YRCESC-----SQTFCWRPHLNFHQAQVH-GRK-FPC--ENCT 231
+L H+ + H + + + C + F + L H + H G K C E C
Sbjct: 18 QLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHM-RRHTGEKPHKCTFEGCR 76
Query: 232 KVFSDPSNLQRHIRTHHVGARQHACQE--CGKTFATSSGLKQHTH-IHSSVKPFRCEV-- 286
K +S NL+ H+R+H G + + C+ C K F+ +S +H + HS+ KP+ C++
Sbjct: 77 KSYSRLENLKTHLRSH-TGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPG 135
Query: 287 CHKAYTQFSNLCRHKRMH 304
C K YT S+L +H +
Sbjct: 136 CTKRYTDPSSLRKHVKTV 153
Score = 96.5 bits (241), Expect = 2e-23
Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 10/85 (11%)
Query: 32 YACKYCG-----KVFPRSANLTRHLRTHTGEQPYKCKY--CERSFSISSNLQRHVRNIHN 84
+ C + G + F L H+R HTGE+P+KC + C +S+S NL+ H+R H
Sbjct: 35 FVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLR-SHT 93
Query: 85 KEKPFKC--PLCDRCFGQQTNLDRH 107
EKP+ C C + F ++ +H
Sbjct: 94 GEKPYMCEHEGCSKAFSNASDRAKH 118
Score = 96.5 bits (241), Expect = 2e-23
Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 10/85 (11%)
Query: 763 YACKYCG-----KVFPRSANLTRHLRTHTGEQPYKCKY--CERSFSISSNLQRHVRNIHN 815
+ C + G + F L H+R HTGE+P+KC + C +S+S NL+ H+R H
Sbjct: 35 FVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLR-SHT 93
Query: 816 KEKPFKC--PLCDRCFGQQTNLDRH 838
EKP+ C C + F ++ +H
Sbjct: 94 GEKPYMCEHEGCSKAFSNASDRAKH 118
Score = 95.7 bits (239), Expect = 3e-23
Identities = 23/90 (25%), Positives = 33/90 (36%), Gaps = 11/90 (12%)
Query: 32 YACKYCGKVFPRSANLTRHL---RTHTGEQPYKCKYCE-----RSFSISSNLQRHVRNIH 83
C + F L H+ H + + C + R F L H+R H
Sbjct: 4 CRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMR-RH 62
Query: 84 NKEKPFKCPL--CDRCFGQQTNLDRHLKKH 111
EKP KC C + + + NL HL+ H
Sbjct: 63 TGEKPHKCTFEGCRKSYSRLENLKTHLRSH 92
Score = 95.7 bits (239), Expect = 3e-23
Identities = 23/90 (25%), Positives = 33/90 (36%), Gaps = 11/90 (12%)
Query: 763 YACKYCGKVFPRSANLTRHL---RTHTGEQPYKCKYCE-----RSFSISSNLQRHVRNIH 814
C + F L H+ H + + C + R F L H+R H
Sbjct: 4 CRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMR-RH 62
Query: 815 NKEKPFKCPL--CDRCFGQQTNLDRHLKKH 842
EKP KC C + + + NL HL+ H
Sbjct: 63 TGEKPHKCTFEGCRKSYSRLENLKTHLRSH 92
Score = 62.6 bits (153), Expect = 1e-11
Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 9/88 (10%)
Query: 198 YRC--ESCSQTFCWRPHLNFHQAQVH-GRK-FPCE--NCTKVFSDPSNLQRHIRTHHVGA 251
++C E C +++ +L H + H G K + CE C+K FS+ S+ +H H
Sbjct: 68 HKCTFEGCRKSYSRLENLKTHL-RSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNE 126
Query: 252 RQHACQ--ECGKTFATSSGLKQHTHIHS 277
+ + C+ C K + S L++H
Sbjct: 127 KPYVCKLPGCTKRYTDPSSLRKHVKTVH 154
Score = 61.8 bits (151), Expect = 2e-11
Identities = 16/62 (25%), Positives = 24/62 (38%), Gaps = 7/62 (11%)
Query: 57 EQPYKCKYCERSFSISSNLQRHVRN--IHNKEKPFKCPLCD-----RCFGQQTNLDRHLK 109
E + C + F L H+ + IH + K F C R F Q L H++
Sbjct: 1 ETDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMR 60
Query: 110 KH 111
+H
Sbjct: 61 RH 62
Score = 61.8 bits (151), Expect = 2e-11
Identities = 16/62 (25%), Positives = 24/62 (38%), Gaps = 7/62 (11%)
Query: 788 EQPYKCKYCERSFSISSNLQRHVRN--IHNKEKPFKCPLCD-----RCFGQQTNLDRHLK 840
E + C + F L H+ + IH + K F C R F Q L H++
Sbjct: 1 ETDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMR 60
Query: 841 KH 842
+H
Sbjct: 61 RH 62
Score = 44.1 bits (105), Expect = 3e-05
Identities = 11/60 (18%), Positives = 18/60 (30%), Gaps = 9/60 (15%)
Query: 280 KPFRCEVCHKAYTQFSNLCRH---KRMHAN-----CRMQIKCVKCDQSFSTVTSLSKHKR 331
R + C + + L H + +H C C + + F L H R
Sbjct: 2 TDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCH-WGGCSRELRPFKAQYMLVVHMR 60
Score = 41.0 bits (97), Expect = 3e-04
Identities = 9/27 (33%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 32 YACKY--CGKVFPRSANLTRHLRTHTG 56
Y CK C K + ++L +H++T G
Sbjct: 129 YVCKLPGCTKRYTDPSSLRKHVKTVHG 155
Score = 41.0 bits (97), Expect = 3e-04
Identities = 9/27 (33%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 763 YACKY--CGKVFPRSANLTRHLRTHTG 787
Y CK C K + ++L +H++T G
Sbjct: 129 YVCKLPGCTKRYTDPSSLRKHVKTVHG 155
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double
helix, transcription/DNA complex; HET: DNA; 2.80A
{Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 104 bits (261), Expect = 4e-27
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 52 RTHTGEQPYKCKYCERSFSISSNLQRHVRNI-HNKEKPFKCPLCDRCFGQQTNLDRHLKK 110
T GE Y+CK C R ++ SN RH K + CP C + F ++ N+ H+K
Sbjct: 3 FTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKI 62
Query: 111 H 111
Sbjct: 63 I 63
Score = 104 bits (261), Expect = 4e-27
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 783 RTHTGEQPYKCKYCERSFSISSNLQRHVRNI-HNKEKPFKCPLCDRCFGQQTNLDRHLKK 841
T GE Y+CK C R ++ SN RH K + CP C + F ++ N+ H+K
Sbjct: 3 FTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKI 62
Query: 842 H 842
Sbjct: 63 I 63
Score = 84.9 bits (211), Expect = 2e-20
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 32 YACKYCGKVFPRSANLTRHLRT--HTGEQPYKCKYCERSFSISSNLQRHVRNIHNK 85
Y CK C +V+ +N RH T + Y C +C + F+ N+ HV+ I +K
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVK-IIHK 65
Score = 84.9 bits (211), Expect = 2e-20
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 763 YACKYCGKVFPRSANLTRHLRT--HTGEQPYKCKYCERSFSISSNLQRHVRNIHNK 816
Y CK C +V+ +N RH T + Y C +C + F+ N+ HV+ I +K
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVK-IIHK 65
Score = 74.5 bits (184), Expect = 8e-17
Identities = 15/62 (24%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
Query: 245 RTHHVGARQHACQECGKTFATSSGLKQH--THIHSSVKPFRCEVCHKAYTQFSNLCRHKR 302
T G + C+ C + + S +H T +VK + C C K +T+ N+ H +
Sbjct: 3 FTK-EGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVK 61
Query: 303 MH 304
+
Sbjct: 62 II 63
Score = 69.5 bits (171), Expect = 4e-15
Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Query: 225 FPCENCTKVFSDPSNLQRHIRT-HHVGARQHACQECGKTFATSSGLKQHTHIHSSV 279
+ C+ C++V++ SN RH T H + + C C K F + H I +
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHKI 66
Score = 59.5 bits (145), Expect = 2e-11
Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Query: 198 YRCESCSQTFCWRPHLNFHQAQVHG---RKFPCENCTKVFSDPSNLQRHIRTHH 248
YRC+ CS+ + + H H + +PC C K F+ N+ H++ H
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIH 64
Score = 57.2 bits (139), Expect = 1e-10
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Query: 275 IHSSVKPFRCEVCHKAYTQFSNLCRHKR--MHANCRMQIKCVKCDQSFSTVTSLSKHKR 331
+RC+VC + YT SN CRH N ++ C C + F+ +++ H +
Sbjct: 4 TKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKV-YPCPFCFKEFTRKDNMTAHVK 61
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 103 bits (260), Expect = 7e-27
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
Query: 32 YACKY--CGKVFPRSANLTRHLRTHTGEQPYKCKY--CERSFSISSNLQRHVRNIHNKEK 87
Y C + CGK F + L H +HT + PY+C + C++ FS+ S L+RH + +H
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEK-VHAGYP 60
Query: 88 PFKCPLCDRCFGQQTNLDRHLKK 110
K C T +H+ +
Sbjct: 61 CKKDDSCSFVGKTWTLYLKHVAE 83
Score = 103 bits (260), Expect = 7e-27
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
Query: 763 YACKY--CGKVFPRSANLTRHLRTHTGEQPYKCKY--CERSFSISSNLQRHVRNIHNKEK 818
Y C + CGK F + L H +HT + PY+C + C++ FS+ S L+RH + +H
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEK-VHAGYP 60
Query: 819 PFKCPLCDRCFGQQTNLDRHLKK 841
K C T +H+ +
Sbjct: 61 CKKDDSCSFVGKTWTLYLKHVAE 83
Score = 83.8 bits (208), Expect = 7e-20
Identities = 20/82 (24%), Positives = 33/82 (40%), Gaps = 4/82 (4%)
Query: 226 PCENCTKVFSDPSNLQRHIRTHHVGARQHACQE--CGKTFATSSGLKQHTHIHSSVKPFR 283
ENC K F + L+ H +H + C C K F+ S LK+H +H+ +
Sbjct: 5 HFENCGKAFKKHNQLKVHQFSH-TQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKK 63
Query: 284 CEVCHKAYTQFSNLCRH-KRMH 304
+ C ++ +H H
Sbjct: 64 DDSCSFVGKTWTLYLKHVAECH 85
Score = 81.5 bits (202), Expect = 5e-19
Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
Query: 256 CQECGKTFATSSGLKQHTHIHSSVKPFRC--EVCHKAYTQFSNLCRHKRMHANCRMQIKC 313
+ CGK F + LK H H+ P+ C E C K ++ S L RH+++HA + K
Sbjct: 6 FENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCK-KD 64
Query: 314 VKCDQSFSTVTSLSKHKR 331
C T T KH
Sbjct: 65 DSCSFVGKTWTLYLKHVA 82
Score = 74.6 bits (184), Expect = 1e-16
Identities = 15/54 (27%), Positives = 20/54 (37%), Gaps = 2/54 (3%)
Query: 32 YACKY--CGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIH 83
Y C + C K F + L RH + H G K C + +HV H
Sbjct: 32 YECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAECH 85
Score = 74.6 bits (184), Expect = 1e-16
Identities = 15/54 (27%), Positives = 20/54 (37%), Gaps = 2/54 (3%)
Query: 763 YACKY--CGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIH 814
Y C + C K F + L RH + H G K C + +HV H
Sbjct: 32 YECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAECH 85
Score = 66.1 bits (162), Expect = 1e-13
Identities = 25/85 (29%), Positives = 32/85 (37%), Gaps = 7/85 (8%)
Query: 198 YRC--ESCSQTFCWRPHLNFHQAQVHGRK-FPC--ENCTKVFSDPSNLQRHIRTHHVGAR 252
Y C E+C + F L HQ + + C E C K FS PS L+RH + H G
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKV-HAGYP 60
Query: 253 QHACQECGKTFATSSGL-KQHTHIH 276
C T + K H
Sbjct: 61 CKKDDSCSFVGKTWTLYLKHVAECH 85
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 77
Score = 102 bits (258), Expect = 1e-26
Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Query: 46 NLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKE--KPFKCPLCDRCFGQQTN 103
+ RTH+GE+PY+C C F+ S ++ H+ + E F CP CD ++++
Sbjct: 2 SSGSSGRTHSGEKPYECYICHARFTQSGTMKMHIL-QKHTENVAKFHCPHCDTVIARKSD 60
Query: 104 LDRHLKKH 111
L HL+K
Sbjct: 61 LGVHLRKQ 68
Score = 102 bits (258), Expect = 1e-26
Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Query: 777 NLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKE--KPFKCPLCDRCFGQQTN 834
+ RTH+GE+PY+C C F+ S ++ H+ + E F CP CD ++++
Sbjct: 2 SSGSSGRTHSGEKPYECYICHARFTQSGTMKMHIL-QKHTENVAKFHCPHCDTVIARKSD 60
Query: 835 LDRHLKKH 842
L HL+K
Sbjct: 61 LGVHLRKQ 68
Score = 91.4 bits (228), Expect = 1e-22
Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQ--PYKCKYCERSFSISSNLQRHVRNIHNKEKPF 89
Y C C F +S + H+ E + C +C+ + S+L H+R H+ P
Sbjct: 16 YECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYSGPS 75
Score = 91.4 bits (228), Expect = 1e-22
Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQ--PYKCKYCERSFSISSNLQRHVRNIHNKEKPF 820
Y C C F +S + H+ E + C +C+ + S+L H+R H+ P
Sbjct: 16 YECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYSGPS 75
Score = 73.7 bits (182), Expect = 2e-16
Identities = 18/66 (27%), Positives = 25/66 (37%), Gaps = 3/66 (4%)
Query: 239 NLQRHIRTHHVGARQHACQECGKTFATSSGLKQHTHIHS--SVKPFRCEVCHKAYTQFSN 296
+ RTH G + + C C F S +K H +V F C C + S+
Sbjct: 2 SSGSSGRTH-SGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSD 60
Query: 297 LCRHKR 302
L H R
Sbjct: 61 LGVHLR 66
Score = 62.9 bits (154), Expect = 1e-12
Identities = 16/64 (25%), Positives = 23/64 (35%), Gaps = 1/64 (1%)
Query: 269 LKQHTHIHSSVKPFRCEVCHKAYTQFSNLCRHKRMHANCRMQI-KCVKCDQSFSTVTSLS 327
HS KP+ C +CH +TQ + H + C CD + + L
Sbjct: 3 SGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLG 62
Query: 328 KHKR 331
H R
Sbjct: 63 VHLR 66
Score = 58.3 bits (142), Expect = 6e-11
Identities = 17/56 (30%), Positives = 22/56 (39%), Gaps = 3/56 (5%)
Query: 198 YRCESCSQTFCWRPHLNFHQAQVHG---RKFPCENCTKVFSDPSNLQRHIRTHHVG 250
Y C C F + H Q H KF C +C V + S+L H+R H
Sbjct: 16 YECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSY 71
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Length = 155
Score = 103 bits (259), Expect = 7e-26
Identities = 34/122 (27%), Positives = 47/122 (38%), Gaps = 19/122 (15%)
Query: 225 FPCENCTKVFSDPSNLQRHIRTHHVG--------ARQHACQECGKTFATSSGLKQHTHIH 276
P ++C + FS L H+ HVG C GK+F L H +H
Sbjct: 26 RPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVH 85
Query: 277 SSVKPFRCEV--CHKAYTQFSNLCRHKRMHA-----NCRMQIKCVKCDQSFSTVTSLSKH 329
+ KPF C C K + + NL HKR H C + CD+ F+ + KH
Sbjct: 86 TGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFE----GCDRRFANSSDRKKH 141
Query: 330 KR 331
Sbjct: 142 MH 143
Score = 102 bits (257), Expect = 1e-25
Identities = 36/121 (29%), Positives = 46/121 (38%), Gaps = 15/121 (12%)
Query: 198 YRCESCSQTFCWRPHLNFHQAQVHGRK----------FPCENCTKVFSDPSNLQRHIRTH 247
+SC +TF L H H C K F L HIR H
Sbjct: 26 RPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVH 85
Query: 248 HVGARQHAC--QECGKTFATSSGLKQHTHIHSSVKPFRCEV--CHKAYTQFSNLCRHKRM 303
G + C CGK FA S LK H H+ KPF+CE C + + S+ +H +
Sbjct: 86 -TGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHV 144
Query: 304 H 304
H
Sbjct: 145 H 145
Score = 99.3 bits (248), Expect = 2e-24
Identities = 33/82 (40%), Positives = 44/82 (53%), Gaps = 5/82 (6%)
Query: 34 CKYCGKVFPRSANLTRHLRTHTGEQPYKCKY--CERSFSISSNLQRHVRNIHNKEKPFKC 91
C GK F L H+R HTGE+P+ C + C + F+ S NL+ H R H EKPFKC
Sbjct: 65 CPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKR-THTGEKPFKC 123
Query: 92 PL--CDRCFGQQTNLDRHLKKH 111
CDR F ++ +H+ H
Sbjct: 124 EFEGCDRRFANSSDRKKHMHVH 145
Score = 99.3 bits (248), Expect = 2e-24
Identities = 33/82 (40%), Positives = 44/82 (53%), Gaps = 5/82 (6%)
Query: 765 CKYCGKVFPRSANLTRHLRTHTGEQPYKCKY--CERSFSISSNLQRHVRNIHNKEKPFKC 822
C GK F L H+R HTGE+P+ C + C + F+ S NL+ H R H EKPFKC
Sbjct: 65 CPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKR-THTGEKPFKC 123
Query: 823 PL--CDRCFGQQTNLDRHLKKH 842
CDR F ++ +H+ H
Sbjct: 124 EFEGCDRRFANSSDRKKHMHVH 145
Score = 98.5 bits (246), Expect = 4e-24
Identities = 25/96 (26%), Positives = 35/96 (36%), Gaps = 12/96 (12%)
Query: 27 TTKDRYACKYCGKVFPRSANLTRHLRTHTGEQPYK---------CKYCERSFSISSNLQR 77
+ K C + F L H+ P + C +SF L
Sbjct: 21 EAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVN 80
Query: 78 HVRNIHNKEKPFKCPL--CDRCFGQQTNLDRHLKKH 111
H+R +H EKPF CP C + F + NL H + H
Sbjct: 81 HIR-VHTGEKPFPCPFPGCGKIFARSENLKIHKRTH 115
Score = 98.5 bits (246), Expect = 4e-24
Identities = 25/96 (26%), Positives = 35/96 (36%), Gaps = 12/96 (12%)
Query: 758 TTKDRYACKYCGKVFPRSANLTRHLRTHTGEQPYK---------CKYCERSFSISSNLQR 808
+ K C + F L H+ P + C +SF L
Sbjct: 21 EAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVN 80
Query: 809 HVRNIHNKEKPFKCPL--CDRCFGQQTNLDRHLKKH 842
H+R +H EKPF CP C + F + NL H + H
Sbjct: 81 HIR-VHTGEKPFPCPFPGCGKIFARSENLKIHKRTH 115
Score = 90.0 bits (224), Expect = 4e-21
Identities = 27/64 (42%), Positives = 42/64 (65%), Gaps = 5/64 (7%)
Query: 32 YACKY--CGKVFPRSANLTRHLRTHTGEQPYKCKY--CERSFSISSNLQRHVRNIHNKEK 87
+ C + CGK+F RS NL H RTHTGE+P+KC++ C+R F+ SS+ ++H+ +H +K
Sbjct: 91 FPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMH-VHTSDK 149
Query: 88 PFKC 91
Sbjct: 150 SGPS 153
Score = 90.0 bits (224), Expect = 4e-21
Identities = 27/64 (42%), Positives = 42/64 (65%), Gaps = 5/64 (7%)
Query: 763 YACKY--CGKVFPRSANLTRHLRTHTGEQPYKCKY--CERSFSISSNLQRHVRNIHNKEK 818
+ C + CGK+F RS NL H RTHTGE+P+KC++ C+R F+ SS+ ++H+ +H +K
Sbjct: 91 FPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMH-VHTSDK 149
Query: 819 PFKC 822
Sbjct: 150 SGPS 153
Score = 85.4 bits (212), Expect = 2e-19
Identities = 33/98 (33%), Positives = 47/98 (47%), Gaps = 8/98 (8%)
Query: 193 YPPDQYRCESCSQTFCWRPHLNFHQAQVH-GRK-FPC--ENCTKVFSDPSNLQRHIRTHH 248
+ C ++F + L H +VH G K FPC C K+F+ NL+ H RTH
Sbjct: 58 HVCYWEECPREGKSFKAKYKLVNHI-RVHTGEKPFPCPFPGCGKIFARSENLKIHKRTH- 115
Query: 249 VGARQHACQ--ECGKTFATSSGLKQHTHIHSSVKPFRC 284
G + C+ C + FA SS K+H H+H+S K
Sbjct: 116 TGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDKSGPS 153
Score = 78.1 bits (193), Expect = 5e-17
Identities = 20/117 (17%), Positives = 32/117 (27%), Gaps = 19/117 (16%)
Query: 229 NCTKVFSDPSNLQRHIRTHHVGARQHACQECGKTFATSSGLKQHTHIHSSVKPFR----- 283
+ + C +TF+T L H + P +
Sbjct: 2 SSGSSGQPIKQELSCKWIDE-AQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVC 60
Query: 284 ----CEVCHKAYTQFSNLCRHKRMHAN-----CRMQIKCVKCDQSFSTVTSLSKHKR 331
C K++ L H R+H C C + F+ +L HKR
Sbjct: 61 YWEECPREGKSFKAKYKLVNHIRVHTGEKPFPC----PFPGCGKIFARSENLKIHKR 113
Score = 78.1 bits (193), Expect = 5e-17
Identities = 16/84 (19%), Positives = 26/84 (30%), Gaps = 10/84 (11%)
Query: 37 CGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFK------ 90
G + K C+R+FS L HV + + P +
Sbjct: 3 SGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVT-MEHVGGPEQNNHVCY 61
Query: 91 ---CPLCDRCFGQQTNLDRHLKKH 111
CP + F + L H++ H
Sbjct: 62 WEECPREGKSFKAKYKLVNHIRVH 85
Score = 78.1 bits (193), Expect = 5e-17
Identities = 16/84 (19%), Positives = 26/84 (30%), Gaps = 10/84 (11%)
Query: 768 CGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFK------ 821
G + K C+R+FS L HV + + P +
Sbjct: 3 SGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVT-MEHVGGPEQNNHVCY 61
Query: 822 ---CPLCDRCFGQQTNLDRHLKKH 842
CP + F + L H++ H
Sbjct: 62 WEECPREGKSFKAKYKLVNHIRVH 85
Score = 62.7 bits (153), Expect = 1e-11
Identities = 14/83 (16%), Positives = 27/83 (32%), Gaps = 11/83 (13%)
Query: 260 GKTFATSSGLKQHTH---IHSSVKPFRCEVCHKAYTQFSNLCRHKRMH--------ANCR 308
G + ++ +KQ I + + C + ++ L H M +
Sbjct: 1 GSSGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVC 60
Query: 309 MQIKCVKCDQSFSTVTSLSKHKR 331
+C + +SF L H R
Sbjct: 61 YWEECPREGKSFKAKYKLVNHIR 83
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 97.9 bits (245), Expect = 2e-24
Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 91
Y C+ CGK F + RH+ H G +PY C C + F + +L H++ IH KP++C
Sbjct: 11 YPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMK-IHTGIKPYEC 68
Query: 92 PLCDRCFGQQTNLDRH 107
+C + F + + RH
Sbjct: 69 NICAKRFMWRDSFHRH 84
Score = 97.9 bits (245), Expect = 2e-24
Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 822
Y C+ CGK F + RH+ H G +PY C C + F + +L H++ IH KP++C
Sbjct: 11 YPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMK-IHTGIKPYEC 68
Query: 823 PLCDRCFGQQTNLDRH 838
+C + F + + RH
Sbjct: 69 NICAKRFMWRDSFHRH 84
Score = 97.9 bits (245), Expect = 2e-24
Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 91
Y C CGK F +L H++ HTG +PY+C C + F + RH + + K ++
Sbjct: 38 YGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFHRH---VTSCTKSYEA 94
Query: 92 PLCDRCFGQQTNL 104
++ + +
Sbjct: 95 AKAEQNTTEASGP 107
Score = 97.9 bits (245), Expect = 2e-24
Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 822
Y C CGK F +L H++ HTG +PY+C C + F + RH + + K ++
Sbjct: 38 YGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFHRH---VTSCTKSYEA 94
Query: 823 PLCDRCFGQQTNL 835
++ + +
Sbjct: 95 AKAEQNTTEASGP 107
Score = 92.5 bits (231), Expect = 2e-22
Identities = 25/102 (24%), Positives = 42/102 (41%), Gaps = 7/102 (6%)
Query: 198 YRCESCSQTFCWRPHLNFHQAQVH-GRK-FPCENCTKVFSDPSNLQRHIRTHHVGARQHA 255
Y C+ C ++F + + H +H G + + C C K F +L H++ H G + +
Sbjct: 11 YPCQ-CGKSFTHKSQRDRHM-SMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH-TGIKPYE 67
Query: 256 CQECGKTFATSSGLKQHTHIHSSVKPFRCEVCHKAYTQFSNL 297
C C K F H H+ S K + + T+ S
Sbjct: 68 CNICAKRFMWRDSF--HRHVTSCTKSYEAAKAEQNTTEASGP 107
Score = 86.7 bits (216), Expect = 2e-20
Identities = 30/103 (29%), Positives = 50/103 (48%), Gaps = 5/103 (4%)
Query: 225 FPCENCTKVFSDPSNLQRHIRTHHVGARQHACQECGKTFATSSGLKQHTHIHSSVKPFRC 284
+PC+ C K F+ S RH+ H +G R + C CGK F L H IH+ +KP+ C
Sbjct: 11 YPCQ-CGKSFTHKSQRDRHMSMH-LGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYEC 68
Query: 285 EVCHKAYTQFSNLCRHKRMHANCRMQIKCVKCDQSFSTVTSLS 327
+C K + + H+ + +C + K +Q+ + + S
Sbjct: 69 NICAKRFMWRDSF--HRHVT-SCTKSYEAAKAEQNTTEASGPS 108
Score = 75.6 bits (187), Expect = 1e-16
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 52 RTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 111
+G++ Y C+ C +SF+ S RH+ +H +P+ C +C + F + +L H+K H
Sbjct: 3 SGSSGDKLYPCQ-CGKSFTHKSQRDRHMS-MHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 60
Score = 75.6 bits (187), Expect = 1e-16
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 783 RTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 842
+G++ Y C+ C +SF+ S RH+ +H +P+ C +C + F + +L H+K H
Sbjct: 3 SGSSGDKLYPCQ-CGKSFTHKSQRDRHMS-MHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 60
Score = 65.9 bits (162), Expect = 3e-13
Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 10/87 (11%)
Query: 248 HVGARQHACQECGKTFATSSGLKQHTHIHSSVKPFRCEVCHKAYTQFSNLCRHKRMHANC 307
G + + C +CGK+F S +H +H ++P+ C VC K + +L H ++H
Sbjct: 5 SSGDKLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTG- 62
Query: 308 RMQIK---CVKCDQSFSTVTSLSKHKR 331
IK C C + F S H+
Sbjct: 63 ---IKPYECNICAKRFMWRDSF--HRH 84
Score = 27.8 bits (63), Expect = 5.7
Identities = 1/17 (5%), Positives = 5/17 (29%)
Query: 32 YACKYCGKVFPRSANLT 48
Y + ++ +
Sbjct: 92 YEAAKAEQNTTEASGPS 108
Score = 27.8 bits (63), Expect = 5.7
Identities = 1/17 (5%), Positives = 5/17 (29%)
Query: 763 YACKYCGKVFPRSANLT 779
Y + ++ +
Sbjct: 92 YEAAKAEQNTTEASGPS 108
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 86
Score = 94.9 bits (237), Expect = 1e-23
Identities = 14/72 (19%), Positives = 25/72 (34%), Gaps = 5/72 (6%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQ----PYKCKYCERSFSISSNLQRHVRNIHNKEK 87
YAC +C K F + L H + + + C C ++F+ + + RH
Sbjct: 16 YACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHAD-NCAGPD 74
Query: 88 PFKCPLCDRCFG 99
+ G
Sbjct: 75 GVEGENSGPSSG 86
Score = 94.9 bits (237), Expect = 1e-23
Identities = 14/72 (19%), Positives = 25/72 (34%), Gaps = 5/72 (6%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQ----PYKCKYCERSFSISSNLQRHVRNIHNKEK 818
YAC +C K F + L H + + + C C ++F+ + + RH
Sbjct: 16 YACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHAD-NCAGPD 74
Query: 819 PFKCPLCDRCFG 830
+ G
Sbjct: 75 GVEGENSGPSSG 86
Score = 84.1 bits (209), Expect = 7e-20
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 5/70 (7%)
Query: 46 NLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIH----NKEKPFKCPLCDRCFGQQ 101
+ RTHTGE+PY C +C+++F L H + + F C C + F ++
Sbjct: 2 SSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFK-RYHDPNFVPAAFVCSKCGKTFTRR 60
Query: 102 TNLDRHLKKH 111
+ RH
Sbjct: 61 NTMARHADNC 70
Score = 84.1 bits (209), Expect = 7e-20
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 5/70 (7%)
Query: 777 NLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIH----NKEKPFKCPLCDRCFGQQ 832
+ RTHTGE+PY C +C+++F L H + + F C C + F ++
Sbjct: 2 SSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFK-RYHDPNFVPAAFVCSKCGKTFTRR 60
Query: 833 TNLDRHLKKH 842
+ RH
Sbjct: 61 NTMARHADNC 70
Score = 74.9 bits (185), Expect = 1e-16
Identities = 19/70 (27%), Positives = 27/70 (38%), Gaps = 5/70 (7%)
Query: 239 NLQRHIRTHHVGARQHACQECGKTFATSSGLKQHTHIH----SSVKPFRCEVCHKAYTQF 294
+ RTH G + +AC C KTF L H + F C C K +T+
Sbjct: 2 SSGSSGRTH-TGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRR 60
Query: 295 SNLCRHKRMH 304
+ + RH
Sbjct: 61 NTMARHADNC 70
Score = 74.5 bits (184), Expect = 2e-16
Identities = 18/85 (21%), Positives = 29/85 (34%), Gaps = 6/85 (7%)
Query: 212 HLNFHQAQVH-GRK-FPCENCTKVFSDPSNLQRHIRTHH---VGARQHACQECGKTFATS 266
+ H G K + C +C K F L H + +H C +CGKTF
Sbjct: 2 SSGSSG-RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRR 60
Query: 267 SGLKQHTHIHSSVKPFRCEVCHKAY 291
+ + +H + E +
Sbjct: 61 NTMARHADNCAGPDGVEGENSGPSS 85
Score = 61.4 bits (150), Expect = 6e-12
Identities = 16/72 (22%), Positives = 26/72 (36%), Gaps = 8/72 (11%)
Query: 198 YRCESCSQTFCWRPHLNFHQAQVH-----GRK-FPCENCTKVFSDPSNLQRHIRTHHVGA 251
Y C C +TF + L+ H + + F C C K F+ + + RH G
Sbjct: 16 YACSHCDKTFRQKQLLDMHF-KRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADN-CAGP 73
Query: 252 RQHACQECGKTF 263
+ G +
Sbjct: 74 DGVEGENSGPSS 85
Score = 56.8 bits (138), Expect = 3e-10
Identities = 14/66 (21%), Positives = 27/66 (40%), Gaps = 3/66 (4%)
Query: 269 LKQHTHIHSSVKPFRCEVCHKAYTQFSNLCRHKRMHANCRMQIK---CVKCDQSFSTVTS 325
H+ KP+ C C K + Q L H + + + C KC ++F+ +
Sbjct: 3 SGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNT 62
Query: 326 LSKHKR 331
+++H
Sbjct: 63 MARHAD 68
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692,
structural genomics, NPPSFA, national project on
protein structural and functional analyses; NMR {Homo
sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 79
Score = 94.5 bits (236), Expect = 1e-23
Identities = 16/73 (21%), Positives = 33/73 (45%), Gaps = 6/73 (8%)
Query: 32 YACKY--CGKVFPRSANLTRHLR-THTGEQPYKCKY--CERSFSISSNLQRHVRNIHNKE 86
C + CG++F L H + H ++ + C C +SF+ +L+ H++ +H+
Sbjct: 8 MPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMK-LHSDT 66
Query: 87 KPFKCPLCDRCFG 99
+ + C G
Sbjct: 67 RDYICEFSGPSSG 79
Score = 94.5 bits (236), Expect = 1e-23
Identities = 16/73 (21%), Positives = 33/73 (45%), Gaps = 6/73 (8%)
Query: 763 YACKY--CGKVFPRSANLTRHLR-THTGEQPYKCKY--CERSFSISSNLQRHVRNIHNKE 817
C + CG++F L H + H ++ + C C +SF+ +L+ H++ +H+
Sbjct: 8 MPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMK-LHSDT 66
Query: 818 KPFKCPLCDRCFG 830
+ + C G
Sbjct: 67 RDYICEFSGPSSG 79
Score = 81.8 bits (203), Expect = 3e-19
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
Query: 223 RKFPC--ENCTKVFSDPSNLQRHIRTHHVGARQHACQE--CGKTFATSSGLKQHTHIHSS 278
PC C ++FS+ L H + H+ + +C E CGK+F LK+H +HS
Sbjct: 6 SGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSD 65
Query: 279 VKPFRCEVCHKAY 291
+ + CE +
Sbjct: 66 TRDYICEFSGPSS 78
Score = 79.1 bits (196), Expect = 3e-18
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 4/62 (6%)
Query: 54 HTGEQPYKCKY--CERSFSISSNLQRHVRNIHNKEKPFKCP--LCDRCFGQQTNLDRHLK 109
+G C + C R FS L H + H +K F CP C + F + +L H+K
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMK 61
Query: 110 KH 111
H
Sbjct: 62 LH 63
Score = 79.1 bits (196), Expect = 3e-18
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 4/62 (6%)
Query: 785 HTGEQPYKCKY--CERSFSISSNLQRHVRNIHNKEKPFKCP--LCDRCFGQQTNLDRHLK 840
+G C + C R FS L H + H +K F CP C + F + +L H+K
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMK 61
Query: 841 KH 842
H
Sbjct: 62 LH 63
Score = 61.8 bits (151), Expect = 3e-12
Identities = 16/62 (25%), Positives = 24/62 (38%), Gaps = 5/62 (8%)
Query: 248 HVGARQHAC--QECGKTFATSSGLKQHTHI-HSSVKPFRCE--VCHKAYTQFSNLCRHKR 302
G+ C CG+ F+ L H H K F C C K++ +L H +
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMK 61
Query: 303 MH 304
+H
Sbjct: 62 LH 63
Score = 30.2 bits (69), Expect = 0.48
Identities = 10/68 (14%), Positives = 20/68 (29%), Gaps = 30/68 (44%)
Query: 198 YRCE--SCSQTFCWRPHLNFHQAQVHGRKFPCENCTKVFSDPSNLQRHIRTHHVGARQHA 255
+ C +C ++F ++ HL H + H R +
Sbjct: 39 FSCPEPACGKSFNFKKHLKEHM---------------------------KL-HSDTRDYI 70
Query: 256 CQECGKTF 263
C+ G +
Sbjct: 71 CEFSGPSS 78
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 91.8 bits (229), Expect = 8e-23
Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 52 RTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 111
+ + P KC C S S + L+ H R IH ++PFKC C Q +NL +H+KK
Sbjct: 2 SSGSSGHPEKCSECSYSCSSKAALRIHER-IHCTDRPFKCNYCSFDTKQPSNLSKHMKKF 60
Score = 91.8 bits (229), Expect = 8e-23
Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 783 RTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 842
+ + P KC C S S + L+ H R IH ++PFKC C Q +NL +H+KK
Sbjct: 2 SSGSSGHPEKCSECSYSCSSKAALRIHER-IHCTDRPFKCNYCSFDTKQPSNLSKHMKKF 60
Score = 86.8 bits (216), Expect = 4e-21
Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 1/61 (1%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 91
C C A L H R H ++P+KC YC SNL +H++ + +
Sbjct: 10 EKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMK-KFHGDMSGPS 68
Query: 92 P 92
Sbjct: 69 S 69
Score = 86.8 bits (216), Expect = 4e-21
Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 1/61 (1%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 822
C C A L H R H ++P+KC YC SNL +H++ + +
Sbjct: 10 EKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMK-KFHGDMSGPS 68
Query: 823 P 823
Sbjct: 69 S 69
Score = 69.1 bits (170), Expect = 7e-15
Identities = 16/57 (28%), Positives = 26/57 (45%)
Query: 248 HVGARQHACQECGKTFATSSGLKQHTHIHSSVKPFRCEVCHKAYTQFSNLCRHKRMH 304
C EC + ++ + L+ H IH + +PF+C C Q SNL +H +
Sbjct: 4 GSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKF 60
Score = 56.7 bits (138), Expect = 2e-10
Identities = 13/58 (22%), Positives = 17/58 (29%), Gaps = 1/58 (1%)
Query: 227 CENCTKVFSDPSNLQRHIRTHHVGARQHACQECGKTFATSSGLKQHTHIHSSVKPFRC 284
C C+ S + L+ H R H R C C S L +H
Sbjct: 12 CSECSYSCSSKAALRIHERIH-CTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDMSGPS 68
Score = 49.4 bits (119), Expect = 6e-08
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 276 HSSVKPFRCEVCHKAYTQFSNLCRHKRMHANCRMQIKCVKCDQSFSTVTSLSKHKR 331
SS P +C C + + + L H+R+H R KC C ++LSKH +
Sbjct: 4 GSSGHPEKCSECSYSCSSKAALRIHERIHCTDR-PFKCNYCSFDTKQPSNLSKHMK 58
Score = 48.6 bits (117), Expect = 1e-07
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 198 YRCESCSQTFCWRPHLNFHQAQVH-GRK-FPCENCTKVFSDPSNLQRHIRTHH 248
+C CS + + L H+ ++H + F C C+ PSNL +H++ H
Sbjct: 10 EKCSECSYSCSSKAALRIHE-RIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFH 61
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 91.4 bits (228), Expect = 1e-22
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Query: 44 SANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTN 103
+ H ++PYKC C+ SF NL H +H EKP++C +C F + N
Sbjct: 2 GHHHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKT-VHTGEKPYRCNICGAQFNRPAN 60
Query: 104 LDRHLKKH 111
L H + H
Sbjct: 61 LKTHTRIH 68
Score = 91.4 bits (228), Expect = 1e-22
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Query: 775 SANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTN 834
+ H ++PYKC C+ SF NL H +H EKP++C +C F + N
Sbjct: 2 GHHHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKT-VHTGEKPYRCNICGAQFNRPAN 60
Query: 835 LDRHLKKH 842
L H + H
Sbjct: 61 LKTHTRIH 68
Score = 88.7 bits (221), Expect = 1e-21
Identities = 25/58 (43%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPF 89
Y C C F NL H HTGE+PY+C C F+ +NL+ H R IH+ EKP+
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTR-IHSGEKPY 74
Score = 88.7 bits (221), Expect = 1e-21
Identities = 25/58 (43%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPF 820
Y C C F NL H HTGE+PY+C C F+ +NL+ H R IH+ EKP+
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTR-IHSGEKPY 74
Score = 81.7 bits (203), Expect = 3e-19
Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Query: 238 SNLQRHIRTHHVGARQHACQECGKTFATSSGLKQHTHIHSSVKPFRCEVCHKAYTQFSNL 297
+ H H + + C C +F L H +H+ KP+RC +C + + +NL
Sbjct: 3 HHHHHHSHMTH-SDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANL 61
Query: 298 CRHKRMH 304
H R+H
Sbjct: 62 KTHTRIH 68
Score = 68.6 bits (169), Expect = 1e-14
Identities = 24/73 (32%), Positives = 32/73 (43%), Gaps = 4/73 (5%)
Query: 212 HLNFHQAQVH-GRK-FPCENCTKVFSDPSNLQRHIRTHHVGARQHACQECGKTFATSSGL 269
H + H + K + C+ C F NL H H G + + C CG F + L
Sbjct: 4 HHHHHS-HMTHSDKPYKCDRCQASFRYKGNLASHKTVH-TGEKPYRCNICGAQFNRPANL 61
Query: 270 KQHTHIHSSVKPF 282
K HT IHS KP+
Sbjct: 62 KTHTRIHSGEKPY 74
Score = 63.2 bits (155), Expect = 1e-12
Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Query: 266 SSGLKQHTHIHSSVKPFRCEVCHKAYTQFSNLCRHKRMHANCRMQIKCVKCDQSFSTVTS 325
H+H+ S KP++C+ C ++ NL HK +H + +C C F+ +
Sbjct: 2 GHHHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEK-PYRCNICGAQFNRPAN 60
Query: 326 LSKHKR 331
L H R
Sbjct: 61 LKTHTR 66
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN
domain containing protein 16, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 90.6 bits (226), Expect = 3e-22
Identities = 26/68 (38%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 44 SANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTN 103
S + R + YKC C +SFS SS+L +H R H EKP+KC C + F Q+++
Sbjct: 3 SGSSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRR-THTGEKPYKCDECGKAFIQRSH 61
Query: 104 LDRHLKKH 111
L H + H
Sbjct: 62 LIGHHRVH 69
Score = 90.6 bits (226), Expect = 3e-22
Identities = 26/68 (38%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 775 SANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTN 834
S + R + YKC C +SFS SS+L +H R H EKP+KC C + F Q+++
Sbjct: 3 SGSSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRR-THTGEKPYKCDECGKAFIQRSH 61
Query: 835 LDRHLKKH 842
L H + H
Sbjct: 62 LIGHHRVH 69
Score = 90.6 bits (226), Expect = 3e-22
Identities = 27/59 (45%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFK 90
Y C CGK F S++L++H RTHTGE+PYKC C ++F S+L H R +H P
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHR-VHTGSGPSS 76
Score = 90.6 bits (226), Expect = 3e-22
Identities = 27/59 (45%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFK 821
Y C CGK F S++L++H RTHTGE+PYKC C ++F S+L H R +H P
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHR-VHTGSGPSS 76
Score = 79.4 bits (197), Expect = 2e-18
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 238 SNLQRHIRTHHVGARQHACQECGKTFATSSGLKQHTHIHSSVKPFRCEVCHKAYTQFSNL 297
+ R R++ C ECGK+F+ SS L +H H+ KP++C+ C KA+ Q S+L
Sbjct: 4 GSSGRSEWQQR-ERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHL 62
Query: 298 CRHKRMH 304
H R+H
Sbjct: 63 IGHHRVH 69
Score = 65.5 bits (161), Expect = 1e-13
Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
Query: 212 HLNFHQAQVH-GRK-FPCENCTKVFSDPSNLQRHIRTHHVGARQHACQECGKTFATSSGL 269
+ R+ + C+ C K FS S+L +H RTH G + + C ECGK F S L
Sbjct: 5 SSGRSE-WQQRERRRYKCDECGKSFSHSSDLSKHRRTH-TGEKPYKCDECGKAFIQRSHL 62
Query: 270 KQHTHIHSSVKPF 282
H +H+ P
Sbjct: 63 IGHHRVHTGSGPS 75
Score = 57.8 bits (141), Expect = 7e-11
Identities = 16/68 (23%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 264 ATSSGLKQHTHIHSSVKPFRCEVCHKAYTQFSNLCRHKRMHANCRMQIKCVKCDQSFSTV 323
+S + + ++C+ C K+++ S+L +H+R H + KC +C ++F
Sbjct: 1 GSSGSSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEK-PYKCDECGKAFIQR 59
Query: 324 TSLSKHKR 331
+ L H R
Sbjct: 60 SHLIGHHR 67
Score = 27.4 bits (62), Expect = 4.9
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 198 YRCESCSQTFCWRPHLNFHQ 217
Y+C+ C + F R HL H
Sbjct: 47 YKCDECGKAFIQRSHLIGHH 66
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 72
Score = 89.1 bits (222), Expect = 7e-22
Identities = 28/58 (48%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPF 89
Y C CGK F RS+ L +H R HTGE+PYKC C ++FS +S L H R IH
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQR-IHTSGPSS 71
Score = 89.1 bits (222), Expect = 7e-22
Identities = 28/58 (48%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPF 820
Y C CGK F RS+ L +H R HTGE+PYKC C ++FS +S L H R IH
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQR-IHTSGPSS 71
Score = 84.8 bits (211), Expect = 2e-20
Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 47 LTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTNLDR 106
+ H+GE+PY C C ++FS SS L +H R +H EKP+KC C + F Q + L
Sbjct: 2 SSGSSGIHSGEKPYGCVECGKAFSRSSILVQHQR-VHTGEKPYKCLECGKAFSQNSGLIN 60
Query: 107 HLKKH 111
H + H
Sbjct: 61 HQRIH 65
Score = 84.8 bits (211), Expect = 2e-20
Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 778 LTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTNLDR 837
+ H+GE+PY C C ++FS SS L +H R +H EKP+KC C + F Q + L
Sbjct: 2 SSGSSGIHSGEKPYGCVECGKAFSRSSILVQHQR-VHTGEKPYKCLECGKAFSQNSGLIN 60
Query: 838 HLKKH 842
H + H
Sbjct: 61 HQRIH 65
Score = 73.7 bits (182), Expect = 2e-16
Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 240 LQRHIRTHHVGARQHACQECGKTFATSSGLKQHTHIHSSVKPFRCEVCHKAYTQFSNLCR 299
H G + + C ECGK F+ SS L QH +H+ KP++C C KA++Q S L
Sbjct: 2 SSGSSGIH-SGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLIN 60
Query: 300 HKRMH 304
H+R+H
Sbjct: 61 HQRIH 65
Score = 63.3 bits (155), Expect = 9e-13
Identities = 27/72 (37%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Query: 213 LNFHQAQVH-GRK-FPCENCTKVFSDPSNLQRHIRTHHVGARQHACQECGKTFATSSGLK 270
+ +H G K + C C K FS S L +H R H G + + C ECGK F+ +SGL
Sbjct: 2 SSGSS-GIHSGEKPYGCVECGKAFSRSSILVQHQRVH-TGEKPYKCLECGKAFSQNSGLI 59
Query: 271 QHTHIHSSVKPF 282
H IH+S
Sbjct: 60 NHQRIHTSGPSS 71
Score = 58.6 bits (143), Expect = 4e-11
Identities = 23/64 (35%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 268 GLKQHTHIHSSVKPFRCEVCHKAYTQFSNLCRHKRMHANCRMQIKCVKCDQSFSTVTSLS 327
G + IHS KP+ C C KA+++ S L +H+R+H + KC++C ++FS + L
Sbjct: 1 GSSGSSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEK-PYKCLECGKAFSQNSGLI 59
Query: 328 KHKR 331
H+R
Sbjct: 60 NHQR 63
Score = 26.7 bits (60), Expect = 6.9
Identities = 7/20 (35%), Positives = 9/20 (45%)
Query: 198 YRCESCSQTFCWRPHLNFHQ 217
Y+C C + F L HQ
Sbjct: 43 YKCLECGKAFSQNSGLINHQ 62
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 88.7 bits (221), Expect = 8e-22
Identities = 22/56 (39%), Positives = 32/56 (57%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEK 87
+ C+ C + F R +L RH R+HT E+PY C C R+F+ L RH + IH+
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGNL 58
Score = 88.7 bits (221), Expect = 8e-22
Identities = 22/56 (39%), Positives = 32/56 (57%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEK 818
+ C+ C + F R +L RH R+HT E+PY C C R+F+ L RH + IH+
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGNL 58
Score = 74.8 bits (185), Expect = 6e-17
Identities = 21/52 (40%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 59 PYKCKYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKK 110
+ C+ C R+F+ +L+RH R H EKP+ C LC+R F ++ L RH +K
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYR-SHTNEKPYPCGLCNRAFTRRDLLIRHAQK 52
Score = 74.8 bits (185), Expect = 6e-17
Identities = 21/52 (40%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 790 PYKCKYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKK 841
+ C+ C R+F+ +L+RH R H EKP+ C LC+R F ++ L RH +K
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYR-SHTNEKPYPCGLCNRAFTRRDLLIRHAQK 52
Score = 66.0 bits (162), Expect = 8e-14
Identities = 19/54 (35%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 252 RQHACQECGKTFATSSGLKQHTHIHSSVKPFRCEVCHKAYTQFSNLCRH-KRMH 304
R C+ C + FA LK+H H++ KP+ C +C++A+T+ L RH +++H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIH 54
Score = 59.8 bits (146), Expect = 1e-11
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 225 FPCENCTKVFSDPSNLQRHIRTHHVGARQHACQECGKTFATSSGLKQHTH-IHS 277
F CE CT+ F+ +L+RH R+ H + + C C + F L +H IHS
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRS-HTNEKPYPCGLCNRAFTRRDLLIRHAQKIHS 55
Score = 47.5 bits (114), Expect = 2e-07
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 280 KPFRCEVCHKAYTQFSNLCRHKRMHANCRMQIKCVKCDQSFSTVTSLSKHKR 331
+ F CEVC +A+ + +L RH R H N + C C+++F+ L +H +
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK-PYPCGLCNRAFTRRDLLIRHAQ 51
Score = 46.3 bits (111), Expect = 6e-07
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 198 YRCESCSQTFCWRPHLNFHQAQVH-GRK-FPCENCTKVFSDPSNLQRHIRTHHVG 250
+ CE C++ F + HL H + H K +PC C + F+ L RH + H G
Sbjct: 3 FVCEVCTRAFARQEHLKRHY-RSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 35.9 bits (84), Expect = 0.003
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 87 KPFKCPLCDRCFGQQTNLDRHLKKH 111
+ F C +C R F +Q +L RH + H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSH 25
Score = 35.9 bits (84), Expect = 0.003
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 818 KPFKCPLCDRCFGQQTNLDRHLKKH 842
+ F C +C R F +Q +L RH + H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSH 25
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 80.4 bits (199), Expect = 9e-19
Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 5/71 (7%)
Query: 43 RSANLTRHLRTHTGEQPYKCKY--CERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQ 100
NL ++ +PY C C+R FS S L RH+R IH +KPF+C +C R F +
Sbjct: 5 PMNNLLNYVVPK--MRPYACPVESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSR 61
Query: 101 QTNLDRHLKKH 111
+L H++ H
Sbjct: 62 SDHLTTHIRTH 72
Score = 80.4 bits (199), Expect = 9e-19
Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 5/71 (7%)
Query: 774 RSANLTRHLRTHTGEQPYKCKY--CERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQ 831
NL ++ +PY C C+R FS S L RH+R IH +KPF+C +C R F +
Sbjct: 5 PMNNLLNYVVPK--MRPYACPVESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSR 61
Query: 832 QTNLDRHLKKH 842
+L H++ H
Sbjct: 62 SDHLTTHIRTH 72
Score = 74.3 bits (183), Expect = 1e-16
Identities = 25/51 (49%), Positives = 35/51 (68%), Gaps = 2/51 (3%)
Query: 32 YACKY--CGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVR 80
YAC C + F RS LTRH+R HTG++P++C+ C R+FS S +L H+R
Sbjct: 20 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR 70
Score = 74.3 bits (183), Expect = 1e-16
Identities = 25/51 (49%), Positives = 35/51 (68%), Gaps = 2/51 (3%)
Query: 763 YACKY--CGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVR 811
YAC C + F RS LTRH+R HTG++P++C+ C R+FS S +L H+R
Sbjct: 20 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR 70
Score = 66.2 bits (162), Expect = 1e-13
Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 5/73 (6%)
Query: 234 FSDPSNLQRHIRTHHVGARQHAC--QECGKTFATSSGLKQHTHIHSSVKPFRCEVCHKAY 291
+NL ++ R +AC + C + F+ S L +H IH+ KPF+C +C + +
Sbjct: 3 PHPMNNLLNYVVPK---MRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNF 59
Query: 292 TQFSNLCRHKRMH 304
++ +L H R H
Sbjct: 60 SRSDHLTTHIRTH 72
Score = 57.7 bits (140), Expect = 8e-11
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 4/69 (5%)
Query: 211 PHLNFHQAQVHGRKFPC--ENCTKVFSDPSNLQRHIRTHHVGARQHACQECGKTFATSSG 268
+L + R + C E+C + FS L RHIR H G + C+ C + F+ S
Sbjct: 7 NNLLNYV-VPKMRPYACPVESCDRRFSRSDELTRHIRIH-TGQKPFQCRICMRNFSRSDH 64
Query: 269 LKQHTHIHS 277
L H H+
Sbjct: 65 LTTHIRTHT 73
Score = 43.1 bits (102), Expect = 1e-05
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 9/69 (13%)
Query: 183 LEDHLITGHRYPPDQYRC--ESCSQTFCWRPHLNFHQAQVH--GRKFPCENCTKVFSDPS 238
L ++++ R Y C ESC + F L H ++H + F C C + FS
Sbjct: 9 LLNYVVPKMR----PYACPVESCDRRFSRSDELTRHI-RIHTGQKPFQCRICMRNFSRSD 63
Query: 239 NLQRHIRTH 247
+L HIRTH
Sbjct: 64 HLTTHIRTH 72
Score = 42.3 bits (100), Expect = 2e-05
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 31 RYACKYCGKVFPRSANLTRHLRTHT 55
+ C+ C + F RS +LT H+RTHT
Sbjct: 49 PFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 42.3 bits (100), Expect = 2e-05
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 762 RYACKYCGKVFPRSANLTRHLRTHT 786
+ C+ C + F RS +LT H+RTHT
Sbjct: 49 PFQCRICMRNFSRSDHLTTHIRTHT 73
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 80.1 bits (198), Expect = 1e-18
Identities = 13/61 (21%), Positives = 24/61 (39%), Gaps = 4/61 (6%)
Query: 54 HTGEQPYKCKYCERSFSISSNLQRHVRNIHNK---EKPFKCPLCDRCFGQQTNLDRHLKK 110
+G +C+ C + ++L H R H + F C C + F + ++ H K
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQR-KHAETVAALRFPCEFCGKRFEKPDSVAAHRSK 60
Query: 111 H 111
Sbjct: 61 S 61
Score = 80.1 bits (198), Expect = 1e-18
Identities = 13/61 (21%), Positives = 24/61 (39%), Gaps = 4/61 (6%)
Query: 785 HTGEQPYKCKYCERSFSISSNLQRHVRNIHNK---EKPFKCPLCDRCFGQQTNLDRHLKK 841
+G +C+ C + ++L H R H + F C C + F + ++ H K
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQR-KHAETVAALRFPCEFCGKRFEKPDSVAAHRSK 60
Query: 842 H 842
Sbjct: 61 S 61
Score = 78.6 bits (194), Expect = 4e-18
Identities = 14/71 (19%), Positives = 23/71 (32%), Gaps = 3/71 (4%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHT---GEQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 88
C+ CG + A+L H R H + C++C + F ++ H H
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLL 67
Query: 89 FKCPLCDRCFG 99
G
Sbjct: 68 APQESSGPSSG 78
Score = 78.6 bits (194), Expect = 4e-18
Identities = 14/71 (19%), Positives = 23/71 (32%), Gaps = 3/71 (4%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHT---GEQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 819
C+ CG + A+L H R H + C++C + F ++ H H
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLL 67
Query: 820 FKCPLCDRCFG 830
G
Sbjct: 68 APQESSGPSSG 78
Score = 67.0 bits (164), Expect = 5e-14
Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 3/61 (4%)
Query: 248 HVGARQHACQECGKTFATSSGLKQHTHIHSSV---KPFRCEVCHKAYTQFSNLCRHKRMH 304
G+ C+ CG T + L H H+ F CE C K + + ++ H+
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKS 61
Query: 305 A 305
Sbjct: 62 H 62
Score = 65.9 bits (161), Expect = 1e-13
Identities = 15/67 (22%), Positives = 21/67 (31%), Gaps = 2/67 (2%)
Query: 223 RKFPCENCTKVFSDPSNLQRHIRTH--HVGARQHACQECGKTFATSSGLKQHTHIHSSVK 280
CE C ++L H R H V A + C+ CGK F + H
Sbjct: 6 SGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPAL 65
Query: 281 PFRCEVC 287
+
Sbjct: 66 LLAPQES 72
Score = 62.0 bits (151), Expect = 3e-12
Identities = 20/71 (28%), Positives = 28/71 (39%), Gaps = 4/71 (5%)
Query: 198 YRCESCSQTFCWRPHLNFHQ---AQVHGRK-FPCENCTKVFSDPSNLQRHIRTHHVGARQ 253
+CE C T + LN+HQ A+ FPCE C K F P ++ H H
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLL 67
Query: 254 HACQECGKTFA 264
+ G +
Sbjct: 68 APQESSGPSSG 78
Score = 55.1 bits (133), Expect = 8e-10
Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 276 HSSVKPFRCEVCHKAYTQFSNLCRHKRMHANCR--MQIKCVKCDQSFSTVTSLSKHKR 331
S +CE+C Q ++L H+R HA ++ C C + F S++ H+
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRS 59
Score = 43.9 bits (104), Expect = 7e-06
Identities = 7/31 (22%), Positives = 13/31 (41%)
Query: 86 EKPFKCPLCDRCFGQQTNLDRHLKKHEADDG 116
+C +C Q+ +L+ H +KH
Sbjct: 5 SSGLQCEICGFTCRQKASLNWHQRKHAETVA 35
Score = 43.9 bits (104), Expect = 7e-06
Identities = 7/31 (22%), Positives = 13/31 (41%)
Query: 817 EKPFKCPLCDRCFGQQTNLDRHLKKHEADDG 847
+C +C Q+ +L+ H +KH
Sbjct: 5 SSGLQCEICGFTCRQKASLNWHQRKHAETVA 35
>2epa_A Krueppel-like factor 10; transforming growth
factor-beta-inducible early growth response protein 1,
TGFB-inducible early growth response protein 1; NMR
{Homo sapiens}
Length = 72
Score = 76.7 bits (189), Expect = 2e-17
Identities = 26/65 (40%), Positives = 40/65 (61%), Gaps = 5/65 (7%)
Query: 21 NGSSSKTTKDR-YACKY--CGKVFPRSANLTRHLRTHTGEQPYKCKY--CERSFSISSNL 75
+G +++ R + C + CGK + +S++L H RTHTGE+P+ C + CER F+ S L
Sbjct: 6 SGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDEL 65
Query: 76 QRHVR 80
RH R
Sbjct: 66 SRHRR 70
Score = 76.7 bits (189), Expect = 2e-17
Identities = 26/65 (40%), Positives = 40/65 (61%), Gaps = 5/65 (7%)
Query: 752 NGSSSKTTKDR-YACKY--CGKVFPRSANLTRHLRTHTGEQPYKCKY--CERSFSISSNL 806
+G +++ R + C + CGK + +S++L H RTHTGE+P+ C + CER F+ S L
Sbjct: 6 SGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDEL 65
Query: 807 QRHVR 811
RH R
Sbjct: 66 SRHRR 70
Score = 69.7 bits (171), Expect = 5e-15
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
Query: 44 SANLTRHLRTHTGEQPYKCKY--CERSFSISSNLQRHVRNIHNKEKPFKC--PLCDRCFG 99
S+ + + + + C + C +++ SS+L+ H R H EKPF C C+R F
Sbjct: 2 SSGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTR-THTGEKPFSCSWKGCERRFA 60
Query: 100 QQTNLDRHLKKH 111
+ L RH + H
Sbjct: 61 RSDELSRHRRTH 72
Score = 69.7 bits (171), Expect = 5e-15
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
Query: 775 SANLTRHLRTHTGEQPYKCKY--CERSFSISSNLQRHVRNIHNKEKPFKC--PLCDRCFG 830
S+ + + + + C + C +++ SS+L+ H R H EKPF C C+R F
Sbjct: 2 SSGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTR-THTGEKPFSCSWKGCERRFA 60
Query: 831 QQTNLDRHLKKH 842
+ L RH + H
Sbjct: 61 RSDELSRHRRTH 72
Score = 60.9 bits (148), Expect = 7e-12
Identities = 25/71 (35%), Positives = 31/71 (43%), Gaps = 5/71 (7%)
Query: 238 SNLQRHIRTHHVGARQHAC--QECGKTFATSSGLKQHTHIHSSVKPFRCEV--CHKAYTQ 293
S R H C CGKT+ SS LK HT H+ KPF C C + + +
Sbjct: 3 SGSSGPQIDSS-RIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFAR 61
Query: 294 FSNLCRHKRMH 304
L RH+R H
Sbjct: 62 SDELSRHRRTH 72
Score = 56.2 bits (136), Expect = 2e-10
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 5/58 (8%)
Query: 223 RKFPC--ENCTKVFSDPSNLQRHIRTHHVGARQHACQ--ECGKTFATSSGLKQHTHIH 276
R C C K + S+L+ H RT H G + +C C + FA S L +H H
Sbjct: 16 RSHICSHPGCGKTYFKSSHLKAHTRT-HTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 45.5 bits (108), Expect = 2e-06
Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 11/73 (15%)
Query: 266 SSGLKQHTHIHSSVKPFRCEV--CHKAYTQFSNLCRHKRMHA-----NCRMQIKCVKCDQ 318
SSG S ++ C C K Y + S+L H R H +C + C++
Sbjct: 2 SSGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWK----GCER 57
Query: 319 SFSTVTSLSKHKR 331
F+ LS+H+R
Sbjct: 58 RFARSDELSRHRR 70
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 74.9 bits (185), Expect = 4e-17
Identities = 13/49 (26%), Positives = 24/49 (48%)
Query: 50 HLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCF 98
+ + +PY C+ C + FS +L H++ +H E+P KC +
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGP 51
Score = 74.9 bits (185), Expect = 4e-17
Identities = 13/49 (26%), Positives = 24/49 (48%)
Query: 781 HLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCF 829
+ + +PY C+ C + FS +L H++ +H E+P KC +
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGP 51
Score = 66.8 bits (164), Expect = 3e-14
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 32 YACKYCGKVFPRSANLTRHL-RTHTGEQPYKCKYCERSFS 70
Y C+ CGK F R +L H+ + HT E+P+KC+ S
Sbjct: 13 YICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPS 52
Score = 66.8 bits (164), Expect = 3e-14
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 763 YACKYCGKVFPRSANLTRHL-RTHTGEQPYKCKYCERSFS 801
Y C+ CGK F R +L H+ + HT E+P+KC+ S
Sbjct: 13 YICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPS 52
Score = 53.4 bits (129), Expect = 2e-09
Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 248 HVGARQHACQECGKTFATSSGLKQHTH-IHSSVKPFRCEVCHKAYTQ 293
+ + CQ CGK F+ L H +H+S +P +C+V +
Sbjct: 7 GSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS 53
Score = 51.0 bits (123), Expect = 1e-08
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 225 FPCENCTKVFSDPSNLQRHIRTHHVGARQHACQECGKTFAT 265
+ C++C K FS P +L HI+ H R H CQ ++
Sbjct: 13 YICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS 53
Score = 43.0 bits (102), Expect = 9e-06
Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Query: 272 HTHIHSSVKPFRCEVCHKAYTQFSNLCRH-KRMHANCRMQIKCVKCDQSFST 322
S KP+ C+ C K +++ +L H K++H + R KC S+
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSER-PHKCQVWVSGPSS 53
Score = 39.1 bits (92), Expect = 2e-04
Identities = 8/29 (27%), Positives = 16/29 (55%)
Query: 82 IHNKEKPFKCPLCDRCFGQQTNLDRHLKK 110
+ KP+ C C + F + +L+ H+K+
Sbjct: 6 SGSVGKPYICQSCGKGFSRPDHLNGHIKQ 34
Score = 39.1 bits (92), Expect = 2e-04
Identities = 8/29 (27%), Positives = 16/29 (55%)
Query: 813 IHNKEKPFKCPLCDRCFGQQTNLDRHLKK 841
+ KP+ C C + F + +L+ H+K+
Sbjct: 6 SGSVGKPYICQSCGKGFSRPDHLNGHIKQ 34
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 47
Score = 69.9 bits (172), Expect = 2e-15
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 50 HLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKCP 92
+ TG++PY+C C ++F +++L RH R H EKP
Sbjct: 3 SGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPS 45
Score = 69.9 bits (172), Expect = 2e-15
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 781 HLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKCP 823
+ TG++PY+C C ++F +++L RH R H EKP
Sbjct: 3 SGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPS 45
Score = 53.7 bits (130), Expect = 1e-09
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 32 YACKYCGKVFPRSANLTRHLR-THTGEQPYKC 62
Y C CGK F ++ +L RH R HTGE+P
Sbjct: 13 YECIECGKAFIQNTSLIRHWRYYHTGEKPSGP 44
Score = 53.7 bits (130), Expect = 1e-09
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 763 YACKYCGKVFPRSANLTRHLR-THTGEQPYKC 793
Y C CGK F ++ +L RH R HTGE+P
Sbjct: 13 YECIECGKAFIQNTSLIRHWRYYHTGEKPSGP 44
Score = 43.3 bits (103), Expect = 5e-06
Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 243 HIRTHHVGARQHACQECGKTFATSSGLKQHT-HIHSSVKPFRC 284
+ G + + C ECGK F ++ L +H + H+ KP
Sbjct: 3 SGSSG-TGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGP 44
Score = 38.3 bits (90), Expect = 3e-04
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 271 QHTHIHSSVKPFRCEVCHKAYTQFSNLCRHKR 302
+ KP+ C C KA+ Q ++L RH R
Sbjct: 2 SSGSSGTGKKPYECIECGKAFIQNTSLIRHWR 33
Score = 34.5 bits (80), Expect = 0.008
Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 78 HVRNIHNKEKPFKCPLCDRCFGQQTNLDRH 107
+KP++C C + F Q T+L RH
Sbjct: 3 SGS-SGTGKKPYECIECGKAFIQNTSLIRH 31
Score = 34.5 bits (80), Expect = 0.008
Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 809 HVRNIHNKEKPFKCPLCDRCFGQQTNLDRH 838
+KP++C C + F Q T+L RH
Sbjct: 3 SGS-SGTGKKPYECIECGKAFIQNTSLIRH 31
Score = 32.9 bits (76), Expect = 0.029
Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 3/43 (6%)
Query: 216 HQAQVH-GRK-FPCENCTKVFSDPSNLQRHIRTHHVGARQHAC 256
G+K + C C K F ++L RH R +H G +
Sbjct: 3 SG-SSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGP 44
Score = 29.5 bits (67), Expect = 0.50
Identities = 7/24 (29%), Positives = 8/24 (33%)
Query: 198 YRCESCSQTFCWRPHLNFHQAQVH 221
Y C C + F L H H
Sbjct: 13 YECIECGKAFIQNTSLIRHWRYYH 36
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 69.1 bits (170), Expect = 5e-15
Identities = 20/43 (46%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 49 RHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 91
+ TGE+PYKC C ++FS +S L RH R IH EKP
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFSQTSKLARHQR-IHTGEKPSGP 43
Score = 69.1 bits (170), Expect = 5e-15
Identities = 20/43 (46%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 780 RHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 822
+ TGE+PYKC C ++FS +S L RH R IH EKP
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFSQTSKLARHQR-IHTGEKPSGP 43
Score = 57.9 bits (141), Expect = 4e-11
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQPYKC 62
Y C CGK F +++ L RH R HTGE+P
Sbjct: 13 YKCNECGKAFSQTSKLARHQRIHTGEKPSGP 43
Score = 57.9 bits (141), Expect = 4e-11
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQPYKC 793
Y C CGK F +++ L RH R HTGE+P
Sbjct: 13 YKCNECGKAFSQTSKLARHQRIHTGEKPSGP 43
Score = 48.3 bits (116), Expect = 1e-07
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 242 RHIRTHHVGARQHACQECGKTFATSSGLKQHTHIHSSVKPFRCE 285
+ G + + C ECGK F+ +S L +H IH+ KP
Sbjct: 2 SSGSSG-TGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGPS 44
Score = 43.7 bits (104), Expect = 4e-06
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 272 HTHIHSSVKPFRCEVCHKAYTQFSNLCRHKRMH 304
+ KP++C C KA++Q S L RH+R+H
Sbjct: 3 SGSSGTGEKPYKCNECGKAFSQTSKLARHQRIH 35
Score = 37.9 bits (89), Expect = 4e-04
Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 77 RHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 111
EKP+KC C + F Q + L RH + H
Sbjct: 2 SSGS-SGTGEKPYKCNECGKAFSQTSKLARHQRIH 35
Score = 37.9 bits (89), Expect = 4e-04
Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 808 RHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 842
EKP+KC C + F Q + L RH + H
Sbjct: 2 SSGS-SGTGEKPYKCNECGKAFSQTSKLARHQRIH 35
Score = 30.9 bits (71), Expect = 0.11
Identities = 13/34 (38%), Positives = 14/34 (41%), Gaps = 3/34 (8%)
Query: 216 HQAQVH-GRK-FPCENCTKVFSDPSNLQRHIRTH 247
G K + C C K FS S L RH R H
Sbjct: 3 SG-SSGTGEKPYKCNECGKAFSQTSKLARHQRIH 35
Score = 26.3 bits (59), Expect = 4.9
Identities = 7/20 (35%), Positives = 9/20 (45%)
Query: 198 YRCESCSQTFCWRPHLNFHQ 217
Y+C C + F L HQ
Sbjct: 13 YKCNECGKAFSQTSKLARHQ 32
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 69.4 bits (169), Expect = 5e-15
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 31 RYACKYCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEK 87
+Y C+ CG + + L +H+RTHT +PY C YC SF NL +H++ K
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK-SKAHSK 56
Score = 69.4 bits (169), Expect = 5e-15
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 762 RYACKYCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEK 818
+Y C+ CG + + L +H+RTHT +PY C YC SF NL +H++ K
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK-SKAHSK 56
Score = 56.3 bits (135), Expect = 2e-10
Identities = 17/53 (32%), Positives = 29/53 (54%)
Query: 253 QHACQECGKTFATSSGLKQHTHIHSSVKPFRCEVCHKAYTQFSNLCRHKRMHA 305
++ C+ECG S LK+H H+ V+P+ C C+ ++ NL +H + A
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKA 53
Score = 54.3 bits (130), Expect = 1e-09
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 60 YKCKYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKHEAD 114
Y C+ C S L++H+R H +P+ C C+ F + NL +H+K
Sbjct: 2 YICEECGIRXKKPSMLKKHIR-THTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHS 55
Score = 54.3 bits (130), Expect = 1e-09
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 791 YKCKYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKHEAD 845
Y C+ C S L++H+R H +P+ C C+ F + NL +H+K
Sbjct: 2 YICEECGIRXKKPSMLKKHIR-THTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHS 55
Score = 48.9 bits (116), Expect = 7e-08
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 224 KFPCENCTKVFSDPSNLQRHIRTHHVGARQHACQECGKTFATSSGLKQHTHIHSSVK 280
K+ CE C PS L++HIRTH R + C C +F T L +H + K
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTH-TDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56
Score = 43.9 bits (103), Expect = 4e-06
Identities = 12/52 (23%), Positives = 19/52 (36%), Gaps = 1/52 (1%)
Query: 197 QYRCESCSQTFCWRPHLNFHQAQVHGRK-FPCENCTKVFSDPSNLQRHIRTH 247
+Y CE C L H + + C C F NL +H+++
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSK 52
Score = 37.0 bits (85), Expect = 0.001
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 25 SKTTKDRYACKYCGKVFPRSANLTRHLRTHTGE 57
+ T Y C YC F NLT+H+++
Sbjct: 23 THTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHS 55
Score = 37.0 bits (85), Expect = 0.001
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 756 SKTTKDRYACKYCGKVFPRSANLTRHLRTHTGE 788
+ T Y C YC F NLT+H+++
Sbjct: 23 THTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHS 55
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 68.7 bits (169), Expect = 6e-15
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 49 RHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 91
+ TGE+PY C C ++F+ SNL +H + IH EKP
Sbjct: 2 SSGSSGTGERPYICTVCGKAFTDRSNLIKHQK-IHTGEKPSGP 43
Score = 68.7 bits (169), Expect = 6e-15
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 780 RHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 822
+ TGE+PY C C ++F+ SNL +H + IH EKP
Sbjct: 2 SSGSSGTGERPYICTVCGKAFTDRSNLIKHQK-IHTGEKPSGP 43
Score = 57.5 bits (140), Expect = 5e-11
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQPYKC 62
Y C CGK F +NL +H + HTGE+P
Sbjct: 13 YICTVCGKAFTDRSNLIKHQKIHTGEKPSGP 43
Score = 57.5 bits (140), Expect = 5e-11
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQPYKC 793
Y C CGK F +NL +H + HTGE+P
Sbjct: 13 YICTVCGKAFTDRSNLIKHQKIHTGEKPSGP 43
Score = 45.9 bits (110), Expect = 5e-07
Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 242 RHIRTHHVGARQHACQECGKTFATSSGLKQHTHIHSSVKPFRC 284
+ G R + C CGK F S L +H IH+ KP
Sbjct: 2 SSGSSG-TGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGP 43
Score = 45.6 bits (109), Expect = 9e-07
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 271 QHTHIHSSVKPFRCEVCHKAYTQFSNLCRHKRMH 304
+ +P+ C VC KA+T SNL +H+++H
Sbjct: 2 SSGSSGTGERPYICTVCGKAFTDRSNLIKHQKIH 35
Score = 38.6 bits (91), Expect = 3e-04
Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 77 RHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 111
E+P+ C +C + F ++NL +H K H
Sbjct: 2 SSGS-SGTGERPYICTVCGKAFTDRSNLIKHQKIH 35
Score = 38.6 bits (91), Expect = 3e-04
Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 808 RHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 842
E+P+ C +C + F ++NL +H K H
Sbjct: 2 SSGS-SGTGERPYICTVCGKAFTDRSNLIKHQKIH 35
Score = 32.1 bits (74), Expect = 0.056
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 3/34 (8%)
Query: 216 HQAQVH-GRK-FPCENCTKVFSDPSNLQRHIRTH 247
G + + C C K F+D SNL +H + H
Sbjct: 3 SG-SSGTGERPYICTVCGKAFTDRSNLIKHQKIH 35
Score = 25.9 bits (58), Expect = 8.1
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 198 YRCESCSQTFCWRPHLNFHQ 217
Y C C + F R +L HQ
Sbjct: 13 YICTVCGKAFTDRSNLIKHQ 32
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2eoi_A
Length = 46
Score = 68.7 bits (169), Expect = 6e-15
Identities = 20/43 (46%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 49 RHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 91
+ TGE+P++C C +SFSISS L H R IH EKP
Sbjct: 2 SSGSSGTGEKPFECAECGKSFSISSQLATHQR-IHTGEKPSGP 43
Score = 68.7 bits (169), Expect = 6e-15
Identities = 20/43 (46%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 780 RHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 822
+ TGE+P++C C +SFSISS L H R IH EKP
Sbjct: 2 SSGSSGTGEKPFECAECGKSFSISSQLATHQR-IHTGEKPSGP 43
Score = 57.1 bits (139), Expect = 6e-11
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQPYKC 62
+ C CGK F S+ L H R HTGE+P
Sbjct: 13 FECAECGKSFSISSQLATHQRIHTGEKPSGP 43
Score = 57.1 bits (139), Expect = 6e-11
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQPYKC 793
+ C CGK F S+ L H R HTGE+P
Sbjct: 13 FECAECGKSFSISSQLATHQRIHTGEKPSGP 43
Score = 49.8 bits (120), Expect = 3e-08
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 242 RHIRTHHVGARQHACQECGKTFATSSGLKQHTHIHSSVKPFRCE 285
+ G + C ECGK+F+ SS L H IH+ KP
Sbjct: 2 SSGSSG-TGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGPS 44
Score = 40.9 bits (97), Expect = 3e-05
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 272 HTHIHSSVKPFRCEVCHKAYTQFSNLCRHKRMH 304
+ KPF C C K+++ S L H+R+H
Sbjct: 3 SGSSGTGEKPFECAECGKSFSISSQLATHQRIH 35
Score = 35.9 bits (84), Expect = 0.002
Identities = 10/35 (28%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 77 RHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 111
EKPF+C C + F + L H + H
Sbjct: 2 SSGS-SGTGEKPFECAECGKSFSISSQLATHQRIH 35
Score = 35.9 bits (84), Expect = 0.002
Identities = 10/35 (28%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 808 RHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 842
EKPF+C C + F + L H + H
Sbjct: 2 SSGS-SGTGEKPFECAECGKSFSISSQLATHQRIH 35
Score = 31.7 bits (73), Expect = 0.077
Identities = 13/34 (38%), Positives = 13/34 (38%), Gaps = 3/34 (8%)
Query: 216 HQAQVH-GRK-FPCENCTKVFSDPSNLQRHIRTH 247
G K F C C K FS S L H R H
Sbjct: 3 SG-SSGTGEKPFECAECGKSFSISSQLATHQRIH 35
Score = 26.7 bits (60), Expect = 4.5
Identities = 6/20 (30%), Positives = 9/20 (45%)
Query: 198 YRCESCSQTFCWRPHLNFHQ 217
+ C C ++F L HQ
Sbjct: 13 FECAECGKSFSISSQLATHQ 32
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Length = 46
Score = 68.8 bits (169), Expect = 6e-15
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 49 RHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 91
+ TGE+PY CK C +SF +S L +H R +H+ EKP
Sbjct: 2 SSGSSGTGEKPYNCKECGKSFRWASCLLKHQR-VHSGEKPSGP 43
Score = 68.8 bits (169), Expect = 6e-15
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 780 RHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 822
+ TGE+PY CK C +SF +S L +H R +H+ EKP
Sbjct: 2 SSGSSGTGEKPYNCKECGKSFRWASCLLKHQR-VHSGEKPSGP 43
Score = 58.4 bits (142), Expect = 2e-11
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQPYKCK 63
Y CK CGK F ++ L +H R H+GE+P
Sbjct: 13 YNCKECGKSFRWASCLLKHQRVHSGEKPSGPS 44
Score = 58.4 bits (142), Expect = 2e-11
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQPYKCK 794
Y CK CGK F ++ L +H R H+GE+P
Sbjct: 13 YNCKECGKSFRWASCLLKHQRVHSGEKPSGPS 44
Score = 50.3 bits (121), Expect = 2e-08
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 242 RHIRTHHVGARQHACQECGKTFATSSGLKQHTHIHSSVKPFRCE 285
+ G + + C+ECGK+F +S L +H +HS KP
Sbjct: 2 SSGSSG-TGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPS 44
Score = 42.6 bits (101), Expect = 1e-05
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 272 HTHIHSSVKPFRCEVCHKAYTQFSNLCRHKRMH 304
+ KP+ C+ C K++ S L +H+R+H
Sbjct: 3 SGSSGTGEKPYNCKECGKSFRWASCLLKHQRVH 35
Score = 36.8 bits (86), Expect = 0.001
Identities = 9/35 (25%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 77 RHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 111
EKP+ C C + F + L +H + H
Sbjct: 2 SSGS-SGTGEKPYNCKECGKSFRWASCLLKHQRVH 35
Score = 36.8 bits (86), Expect = 0.001
Identities = 9/35 (25%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 808 RHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 842
EKP+ C C + F + L +H + H
Sbjct: 2 SSGS-SGTGEKPYNCKECGKSFRWASCLLKHQRVH 35
Score = 31.4 bits (72), Expect = 0.077
Identities = 12/45 (26%), Positives = 16/45 (35%), Gaps = 4/45 (8%)
Query: 216 HQAQVH-GRK-FPCENCTKVFSDPSNLQRHIRTHHVGARQHACQE 258
G K + C+ C K F S L +H R H G +
Sbjct: 3 SG-SSGTGEKPYNCKECGKSFRWASCLLKHQRV-HSGEKPSGPSS 45
Score = 29.1 bits (66), Expect = 0.56
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 198 YRCESCSQTFCWRPHLNFHQ 217
Y C+ C ++F W L HQ
Sbjct: 13 YNCKECGKSFRWASCLLKHQ 32
Score = 26.0 bits (58), Expect = 7.1
Identities = 8/33 (24%), Positives = 13/33 (39%), Gaps = 1/33 (3%)
Query: 299 RHKRMHANCRMQIKCVKCDQSFSTVTSLSKHKR 331
+ C +C +SF + L KH+R
Sbjct: 2 SSGSSGTGEK-PYNCKECGKSFRWASCLLKHQR 33
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 68.3 bits (168), Expect = 7e-15
Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 49 RHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 91
+ TGE+PY C+ C ++F S LQ H R IH EKP
Sbjct: 2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEHQR-IHTGEKPSGP 43
Score = 68.3 bits (168), Expect = 7e-15
Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 780 RHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 822
+ TGE+PY C+ C ++F S LQ H R IH EKP
Sbjct: 2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEHQR-IHTGEKPSGP 43
Score = 57.5 bits (140), Expect = 4e-11
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQPYKC 62
Y C+ CGK F + L H R HTGE+P
Sbjct: 13 YNCEECGKAFIHDSQLQEHQRIHTGEKPSGP 43
Score = 57.5 bits (140), Expect = 4e-11
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQPYKC 793
Y C+ CGK F + L H R HTGE+P
Sbjct: 13 YNCEECGKAFIHDSQLQEHQRIHTGEKPSGP 43
Score = 48.7 bits (117), Expect = 8e-08
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 242 RHIRTHHVGARQHACQECGKTFATSSGLKQHTHIHSSVKPFRCE 285
+ G + + C+ECGK F S L++H IH+ KP
Sbjct: 2 SSGSSG-TGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPS 44
Score = 45.2 bits (108), Expect = 1e-06
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 272 HTHIHSSVKPFRCEVCHKAYTQFSNLCRHKRMH 304
+ KP+ CE C KA+ S L H+R+H
Sbjct: 3 SGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIH 35
Score = 36.7 bits (86), Expect = 0.001
Identities = 9/35 (25%), Positives = 13/35 (37%), Gaps = 1/35 (2%)
Query: 77 RHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 111
EKP+ C C + F + L H + H
Sbjct: 2 SSGS-SGTGEKPYNCEECGKAFIHDSQLQEHQRIH 35
Score = 36.7 bits (86), Expect = 0.001
Identities = 9/35 (25%), Positives = 13/35 (37%), Gaps = 1/35 (2%)
Query: 808 RHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 842
EKP+ C C + F + L H + H
Sbjct: 2 SSGS-SGTGEKPYNCEECGKAFIHDSQLQEHQRIH 35
Score = 31.7 bits (73), Expect = 0.070
Identities = 13/34 (38%), Positives = 14/34 (41%), Gaps = 3/34 (8%)
Query: 216 HQAQVH-GRK-FPCENCTKVFSDPSNLQRHIRTH 247
G K + CE C K F S LQ H R H
Sbjct: 3 SG-SSGTGEKPYNCEECGKAFIHDSQLQEHQRIH 35
Score = 28.3 bits (64), Expect = 1.1
Identities = 8/20 (40%), Positives = 9/20 (45%)
Query: 198 YRCESCSQTFCWRPHLNFHQ 217
Y CE C + F L HQ
Sbjct: 13 YNCEECGKAFIHDSQLQEHQ 32
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Length = 46
Score = 68.3 bits (168), Expect = 8e-15
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 49 RHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 91
+ TGE+ YKC C + FS +S L +H + IH EKP
Sbjct: 2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQHQK-IHTGEKPSGP 43
Score = 68.3 bits (168), Expect = 8e-15
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 780 RHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 822
+ TGE+ YKC C + FS +S L +H + IH EKP
Sbjct: 2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQHQK-IHTGEKPSGP 43
Score = 58.7 bits (143), Expect = 2e-11
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQPYKC 62
Y C CGKVF R++ L++H + HTGE+P
Sbjct: 13 YKCNECGKVFSRNSQLSQHQKIHTGEKPSGP 43
Score = 58.7 bits (143), Expect = 2e-11
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQPYKC 793
Y C CGKVF R++ L++H + HTGE+P
Sbjct: 13 YKCNECGKVFSRNSQLSQHQKIHTGEKPSGP 43
Score = 49.4 bits (119), Expect = 3e-08
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 242 RHIRTHHVGARQHACQECGKTFATSSGLKQHTHIHSSVKPFRCE 285
+ G +++ C ECGK F+ +S L QH IH+ KP
Sbjct: 2 SSGSSG-TGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPS 44
Score = 44.8 bits (107), Expect = 1e-06
Identities = 8/34 (23%), Positives = 18/34 (52%)
Query: 271 QHTHIHSSVKPFRCEVCHKAYTQFSNLCRHKRMH 304
+ K ++C C K +++ S L +H+++H
Sbjct: 2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIH 35
Score = 37.9 bits (89), Expect = 5e-04
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 77 RHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 111
EK +KC C + F + + L +H K H
Sbjct: 2 SSGS-SGTGEKRYKCNECGKVFSRNSQLSQHQKIH 35
Score = 37.9 bits (89), Expect = 5e-04
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 808 RHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 842
EK +KC C + F + + L +H K H
Sbjct: 2 SSGS-SGTGEKRYKCNECGKVFSRNSQLSQHQKIH 35
Score = 31.0 bits (71), Expect = 0.11
Identities = 12/34 (35%), Positives = 15/34 (44%), Gaps = 3/34 (8%)
Query: 216 HQAQVH-GRK-FPCENCTKVFSDPSNLQRHIRTH 247
G K + C C KVFS S L +H + H
Sbjct: 3 SG-SSGTGEKRYKCNECGKVFSRNSQLSQHQKIH 35
Score = 26.3 bits (59), Expect = 5.4
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 198 YRCESCSQTFCWRPHLNFHQ 217
Y+C C + F L+ HQ
Sbjct: 13 YKCNECGKVFSRNSQLSQHQ 32
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 68.3 bits (168), Expect = 8e-15
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 50 HLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 91
+ TGE+P+KC C +SF S L RH +H EKP
Sbjct: 3 SGSSGTGEKPFKCDICGKSFCGRSRLNRHSM-VHTAEKPSGP 43
Score = 68.3 bits (168), Expect = 8e-15
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 781 HLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 822
+ TGE+P+KC C +SF S L RH +H EKP
Sbjct: 3 SGSSGTGEKPFKCDICGKSFCGRSRLNRHSM-VHTAEKPSGP 43
Score = 57.9 bits (141), Expect = 3e-11
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQPYKC 62
+ C CGK F + L RH HT E+P
Sbjct: 13 FKCDICGKSFCGRSRLNRHSMVHTAEKPSGP 43
Score = 57.9 bits (141), Expect = 3e-11
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQPYKC 793
+ C CGK F + L RH HT E+P
Sbjct: 13 FKCDICGKSFCGRSRLNRHSMVHTAEKPSGP 43
Score = 46.7 bits (112), Expect = 3e-07
Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 243 HIRTHHVGARQHACQECGKTFATSSGLKQHTHIHSSVKPFRCE 285
+ G + C CGK+F S L +H+ +H++ KP
Sbjct: 3 SGSSG-TGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPS 44
Score = 46.7 bits (112), Expect = 4e-07
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 272 HTHIHSSVKPFRCEVCHKAYTQFSNLCRHKRMH 304
+ KPF+C++C K++ S L RH +H
Sbjct: 3 SGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVH 35
Score = 38.2 bits (90), Expect = 3e-04
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 78 HVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 111
EKPFKC +C + F ++ L+RH H
Sbjct: 3 SGS-SGTGEKPFKCDICGKSFCGRSRLNRHSMVH 35
Score = 38.2 bits (90), Expect = 3e-04
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 809 HVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 842
EKPFKC +C + F ++ L+RH H
Sbjct: 3 SGS-SGTGEKPFKCDICGKSFCGRSRLNRHSMVH 35
Score = 32.8 bits (76), Expect = 0.025
Identities = 12/34 (35%), Positives = 13/34 (38%), Gaps = 3/34 (8%)
Query: 216 HQAQVH-GRK-FPCENCTKVFSDPSNLQRHIRTH 247
G K F C+ C K F S L RH H
Sbjct: 3 SG-SSGTGEKPFKCDICGKSFCGRSRLNRHSMVH 35
Score = 30.5 bits (70), Expect = 0.18
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 198 YRCESCSQTFCWRPHLNFHQ 217
++C+ C ++FC R LN H
Sbjct: 13 FKCDICGKSFCGRSRLNRHS 32
Score = 25.9 bits (58), Expect = 8.7
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 312 KCVKCDQSFSTVTSLSKHKR 331
KC C +SF + L++H
Sbjct: 14 KCDICGKSFCGRSRLNRHSM 33
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 68.3 bits (168), Expect = 8e-15
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 49 RHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 91
+ +GE+PYKC C ++F ++L H R IH +P
Sbjct: 2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEHRR-IHTGYRPSGP 43
Score = 68.3 bits (168), Expect = 8e-15
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 780 RHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 822
+ +GE+PYKC C ++F ++L H R IH +P
Sbjct: 2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEHRR-IHTGYRPSGP 43
Score = 59.8 bits (146), Expect = 8e-12
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQPYKC 62
Y C CGK F R +L H R HTG +P
Sbjct: 13 YKCSECGKAFHRHTHLNEHRRIHTGYRPSGP 43
Score = 59.8 bits (146), Expect = 8e-12
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQPYKC 793
Y C CGK F R +L H R HTG +P
Sbjct: 13 YKCSECGKAFHRHTHLNEHRRIHTGYRPSGP 43
Score = 48.3 bits (116), Expect = 8e-08
Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Query: 242 RHIRTHHVGARQHACQECGKTFATSSGLKQHTHIHSSVKPFRCE 285
+ G + + C ECGK F + L +H IH+ +P
Sbjct: 2 SSGSSG-SGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPS 44
Score = 46.7 bits (112), Expect = 3e-07
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 271 QHTHIHSSVKPFRCEVCHKAYTQFSNLCRHKRMH 304
S KP++C C KA+ + ++L H+R+H
Sbjct: 2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIH 35
Score = 38.6 bits (91), Expect = 2e-04
Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 77 RHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 111
+ EKP+KC C + F + T+L+ H + H
Sbjct: 2 SSGS-SGSGEKPYKCSECGKAFHRHTHLNEHRRIH 35
Score = 38.6 bits (91), Expect = 2e-04
Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 808 RHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 842
+ EKP+KC C + F + T+L+ H + H
Sbjct: 2 SSGS-SGSGEKPYKCSECGKAFHRHTHLNEHRRIH 35
Score = 30.5 bits (70), Expect = 0.18
Identities = 10/34 (29%), Positives = 13/34 (38%), Gaps = 3/34 (8%)
Query: 216 HQAQVH-GRK-FPCENCTKVFSDPSNLQRHIRTH 247
G K + C C K F ++L H R H
Sbjct: 3 SG-SSGSGEKPYKCSECGKAFHRHTHLNEHRRIH 35
Score = 28.2 bits (64), Expect = 1.2
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 198 YRCESCSQTFCWRPHLNFHQ 217
Y+C C + F HLN H+
Sbjct: 13 YKCSECGKAFHRHTHLNEHR 32
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 68.3 bits (168), Expect = 8e-15
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 49 RHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 91
+ +GE+PY C YC ++F +S+ L RH R IH EKP
Sbjct: 2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQR-IHTGEKPSGP 43
Score = 68.3 bits (168), Expect = 8e-15
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 780 RHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 822
+ +GE+PY C YC ++F +S+ L RH R IH EKP
Sbjct: 2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQR-IHTGEKPSGP 43
Score = 59.4 bits (145), Expect = 1e-11
Identities = 18/31 (58%), Positives = 19/31 (61%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQPYKC 62
Y C YCGK F SA L RH R HTGE+P
Sbjct: 13 YVCDYCGKAFGLSAELVRHQRIHTGEKPSGP 43
Score = 59.4 bits (145), Expect = 1e-11
Identities = 18/31 (58%), Positives = 19/31 (61%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQPYKC 793
Y C YCGK F SA L RH R HTGE+P
Sbjct: 13 YVCDYCGKAFGLSAELVRHQRIHTGEKPSGP 43
Score = 47.5 bits (114), Expect = 2e-07
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 242 RHIRTHHVGARQHACQECGKTFATSSGLKQHTHIHSSVKPFRC 284
+ G + + C CGK F S+ L +H IH+ KP
Sbjct: 2 SSGSSGS-GEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGP 43
Score = 46.0 bits (110), Expect = 6e-07
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 271 QHTHIHSSVKPFRCEVCHKAYTQFSNLCRHKRMH 304
S KP+ C+ C KA+ + L RH+R+H
Sbjct: 2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIH 35
Score = 37.9 bits (89), Expect = 4e-04
Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 77 RHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 111
+ EKP+ C C + FG L RH + H
Sbjct: 2 SSGS-SGSGEKPYVCDYCGKAFGLSAELVRHQRIH 35
Score = 37.9 bits (89), Expect = 4e-04
Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 808 RHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 842
+ EKP+ C C + FG L RH + H
Sbjct: 2 SSGS-SGSGEKPYVCDYCGKAFGLSAELVRHQRIH 35
Score = 31.7 bits (73), Expect = 0.066
Identities = 11/34 (32%), Positives = 14/34 (41%), Gaps = 3/34 (8%)
Query: 216 HQAQVH-GRK-FPCENCTKVFSDPSNLQRHIRTH 247
G K + C+ C K F + L RH R H
Sbjct: 3 SG-SSGSGEKPYVCDYCGKAFGLSAELVRHQRIH 35
Score = 25.9 bits (58), Expect = 7.8
Identities = 7/20 (35%), Positives = 9/20 (45%)
Query: 198 YRCESCSQTFCWRPHLNFHQ 217
Y C+ C + F L HQ
Sbjct: 13 YVCDYCGKAFGLSAELVRHQ 32
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 68.3 bits (168), Expect = 8e-15
Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 49 RHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 91
+ TGE+PYKC C + F +S+L RH IH EKP
Sbjct: 2 SSGSSGTGEKPYKCHECGKVFRRNSHLARHQL-IHTGEKPSGP 43
Score = 68.3 bits (168), Expect = 8e-15
Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 780 RHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 822
+ TGE+PYKC C + F +S+L RH IH EKP
Sbjct: 2 SSGSSGTGEKPYKCHECGKVFRRNSHLARHQL-IHTGEKPSGP 43
Score = 59.0 bits (144), Expect = 1e-11
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQPYKC 62
Y C CGKVF R+++L RH HTGE+P
Sbjct: 13 YKCHECGKVFRRNSHLARHQLIHTGEKPSGP 43
Score = 59.0 bits (144), Expect = 1e-11
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQPYKC 793
Y C CGKVF R+++L RH HTGE+P
Sbjct: 13 YKCHECGKVFRRNSHLARHQLIHTGEKPSGP 43
Score = 47.9 bits (115), Expect = 1e-07
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 242 RHIRTHHVGARQHACQECGKTFATSSGLKQHTHIHSSVKPFRCE 285
+ G + + C ECGK F +S L +H IH+ KP
Sbjct: 2 SSGSSG-TGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPS 44
Score = 44.8 bits (107), Expect = 2e-06
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 271 QHTHIHSSVKPFRCEVCHKAYTQFSNLCRHKRMH 304
+ KP++C C K + + S+L RH+ +H
Sbjct: 2 SSGSSGTGEKPYKCHECGKVFRRNSHLARHQLIH 35
Score = 38.6 bits (91), Expect = 3e-04
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 77 RHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 111
EKP+KC C + F + ++L RH H
Sbjct: 2 SSGS-SGTGEKPYKCHECGKVFRRNSHLARHQLIH 35
Score = 38.6 bits (91), Expect = 3e-04
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 808 RHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 842
EKP+KC C + F + ++L RH H
Sbjct: 2 SSGS-SGTGEKPYKCHECGKVFRRNSHLARHQLIH 35
Score = 30.5 bits (70), Expect = 0.18
Identities = 12/34 (35%), Positives = 14/34 (41%), Gaps = 3/34 (8%)
Query: 216 HQAQVH-GRK-FPCENCTKVFSDPSNLQRHIRTH 247
G K + C C KVF S+L RH H
Sbjct: 3 SG-SSGTGEKPYKCHECGKVFRRNSHLARHQLIH 35
Score = 27.1 bits (61), Expect = 3.5
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 198 YRCESCSQTFCWRPHLNFHQ 217
Y+C C + F HL HQ
Sbjct: 13 YKCHECGKVFRRNSHLARHQ 32
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 68.3 bits (168), Expect = 9e-15
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 49 RHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 91
+ TGE+P++C C+++F+ SNL H R H EKP
Sbjct: 2 SSGSSGTGEKPFECSECQKAFNTKSNLIVHQR-THTGEKPSGP 43
Score = 68.3 bits (168), Expect = 9e-15
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 780 RHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 822
+ TGE+P++C C+++F+ SNL H R H EKP
Sbjct: 2 SSGSSGTGEKPFECSECQKAFNTKSNLIVHQR-THTGEKPSGP 43
Score = 57.1 bits (139), Expect = 7e-11
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQPYKC 62
+ C C K F +NL H RTHTGE+P
Sbjct: 13 FECSECQKAFNTKSNLIVHQRTHTGEKPSGP 43
Score = 57.1 bits (139), Expect = 7e-11
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQPYKC 793
+ C C K F +NL H RTHTGE+P
Sbjct: 13 FECSECQKAFNTKSNLIVHQRTHTGEKPSGP 43
Score = 46.3 bits (111), Expect = 4e-07
Identities = 13/44 (29%), Positives = 16/44 (36%), Gaps = 1/44 (2%)
Query: 242 RHIRTHHVGARQHACQECGKTFATSSGLKQHTHIHSSVKPFRCE 285
+ G + C EC K F T S L H H+ KP
Sbjct: 2 SSGSSG-TGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGPS 44
Score = 42.1 bits (100), Expect = 1e-05
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 272 HTHIHSSVKPFRCEVCHKAYTQFSNLCRHKRMH 304
+ KPF C C KA+ SNL H+R H
Sbjct: 3 SGSSGTGEKPFECSECQKAFNTKSNLIVHQRTH 35
Score = 38.6 bits (91), Expect = 2e-04
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 77 RHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 111
EKPF+C C + F ++NL H + H
Sbjct: 2 SSGS-SGTGEKPFECSECQKAFNTKSNLIVHQRTH 35
Score = 38.6 bits (91), Expect = 2e-04
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 808 RHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 842
EKPF+C C + F ++NL H + H
Sbjct: 2 SSGS-SGTGEKPFECSECQKAFNTKSNLIVHQRTH 35
Score = 32.8 bits (76), Expect = 0.029
Identities = 14/34 (41%), Positives = 15/34 (44%), Gaps = 3/34 (8%)
Query: 216 HQAQVH-GRK-FPCENCTKVFSDPSNLQRHIRTH 247
G K F C C K F+ SNL H RTH
Sbjct: 3 SG-SSGTGEKPFECSECQKAFNTKSNLIVHQRTH 35
Score = 26.3 bits (59), Expect = 5.6
Identities = 6/20 (30%), Positives = 10/20 (50%)
Query: 198 YRCESCSQTFCWRPHLNFHQ 217
+ C C + F + +L HQ
Sbjct: 13 FECSECQKAFNTKSNLIVHQ 32
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 68.3 bits (168), Expect = 9e-15
Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 49 RHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 91
+ TGE+PYKC+ C ++F +SS+L +H +H+ E+P
Sbjct: 2 SSGSSGTGEKPYKCQVCGKAFRVSSHLVQHHS-VHSGERPSGP 43
Score = 68.3 bits (168), Expect = 9e-15
Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 780 RHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 822
+ TGE+PYKC+ C ++F +SS+L +H +H+ E+P
Sbjct: 2 SSGSSGTGEKPYKCQVCGKAFRVSSHLVQHHS-VHSGERPSGP 43
Score = 59.1 bits (144), Expect = 1e-11
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQPYKC 62
Y C+ CGK F S++L +H H+GE+P
Sbjct: 13 YKCQVCGKAFRVSSHLVQHHSVHSGERPSGP 43
Score = 59.1 bits (144), Expect = 1e-11
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQPYKC 793
Y C+ CGK F S++L +H H+GE+P
Sbjct: 13 YKCQVCGKAFRVSSHLVQHHSVHSGERPSGP 43
Score = 48.7 bits (117), Expect = 7e-08
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 242 RHIRTHHVGARQHACQECGKTFATSSGLKQHTHIHSSVKPFRC 284
+ G + + CQ CGK F SS L QH +HS +P
Sbjct: 2 SSGSSG-TGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGP 43
Score = 47.9 bits (115), Expect = 1e-07
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 271 QHTHIHSSVKPFRCEVCHKAYTQFSNLCRHKRMH 304
+ KP++C+VC KA+ S+L +H +H
Sbjct: 2 SSGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVH 35
Score = 37.5 bits (88), Expect = 6e-04
Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 77 RHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 111
EKP+KC +C + F ++L +H H
Sbjct: 2 SSGS-SGTGEKPYKCQVCGKAFRVSSHLVQHHSVH 35
Score = 37.5 bits (88), Expect = 6e-04
Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 808 RHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 842
EKP+KC +C + F ++L +H H
Sbjct: 2 SSGS-SGTGEKPYKCQVCGKAFRVSSHLVQHHSVH 35
Score = 29.8 bits (68), Expect = 0.30
Identities = 10/34 (29%), Positives = 14/34 (41%), Gaps = 3/34 (8%)
Query: 216 HQAQVH-GRK-FPCENCTKVFSDPSNLQRHIRTH 247
G K + C+ C K F S+L +H H
Sbjct: 3 SG-SSGTGEKPYKCQVCGKAFRVSSHLVQHHSVH 35
Score = 27.5 bits (62), Expect = 2.5
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 198 YRCESCSQTFCWRPHLNFHQ 217
Y+C+ C + F HL H
Sbjct: 13 YKCQVCGKAFRVSSHLVQHH 32
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 67.9 bits (167), Expect = 9e-15
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 49 RHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 91
+ TG +PY C C ++FS+ S+L H IH EKP
Sbjct: 2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQV-IHTGEKPSGP 43
Score = 67.9 bits (167), Expect = 9e-15
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 780 RHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 822
+ TG +PY C C ++FS+ S+L H IH EKP
Sbjct: 2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQV-IHTGEKPSGP 43
Score = 57.1 bits (139), Expect = 8e-11
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQPYKC 62
Y C CGK F ++LT H HTGE+P
Sbjct: 13 YMCNECGKAFSVYSSLTTHQVIHTGEKPSGP 43
Score = 57.1 bits (139), Expect = 8e-11
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQPYKC 793
Y C CGK F ++LT H HTGE+P
Sbjct: 13 YMCNECGKAFSVYSSLTTHQVIHTGEKPSGP 43
Score = 47.9 bits (115), Expect = 1e-07
Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Query: 242 RHIRTHHVGARQHACQECGKTFATSSGLKQHTHIHSSVKPFRCE 285
+ G + + C ECGK F+ S L H IH+ KP
Sbjct: 2 SSGSSG-TGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGPS 44
Score = 45.6 bits (109), Expect = 9e-07
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 271 QHTHIHSSVKPFRCEVCHKAYTQFSNLCRHKRMH 304
+ VKP+ C C KA++ +S+L H+ +H
Sbjct: 2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIH 35
Score = 37.5 bits (88), Expect = 7e-04
Identities = 8/35 (22%), Positives = 12/35 (34%), Gaps = 1/35 (2%)
Query: 77 RHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 111
KP+ C C + F ++L H H
Sbjct: 2 SSGS-SGTGVKPYMCNECGKAFSVYSSLTTHQVIH 35
Score = 37.5 bits (88), Expect = 7e-04
Identities = 8/35 (22%), Positives = 12/35 (34%), Gaps = 1/35 (2%)
Query: 808 RHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 842
KP+ C C + F ++L H H
Sbjct: 2 SSGS-SGTGVKPYMCNECGKAFSVYSSLTTHQVIH 35
Score = 31.0 bits (71), Expect = 0.12
Identities = 9/21 (42%), Positives = 10/21 (47%)
Query: 227 CENCTKVFSDPSNLQRHIRTH 247
C C K FS S+L H H
Sbjct: 15 CNECGKAFSVYSSLTTHQVIH 35
Score = 26.3 bits (59), Expect = 4.9
Identities = 7/33 (21%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 299 RHKRMHANCRMQIKCVKCDQSFSTVTSLSKHKR 331
+ C +C ++FS +SL+ H+
Sbjct: 2 SSGSSGTGVK-PYMCNECGKAFSVYSSLTTHQV 33
Score = 26.3 bits (59), Expect = 6.7
Identities = 7/20 (35%), Positives = 8/20 (40%)
Query: 198 YRCESCSQTFCWRPHLNFHQ 217
Y C C + F L HQ
Sbjct: 13 YMCNECGKAFSVYSSLTTHQ 32
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 67.9 bits (167), Expect = 1e-14
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 49 RHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 91
+ +GE+P+KCK C ++F + +L H+R IH EKP
Sbjct: 2 SSGSSGSGEKPFKCKECGKAFRQNIHLASHLR-IHTGEKPSGP 43
Score = 67.9 bits (167), Expect = 1e-14
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 780 RHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 822
+ +GE+P+KCK C ++F + +L H+R IH EKP
Sbjct: 2 SSGSSGSGEKPFKCKECGKAFRQNIHLASHLR-IHTGEKPSGP 43
Score = 58.7 bits (143), Expect = 2e-11
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQPYKC 62
+ CK CGK F ++ +L HLR HTGE+P
Sbjct: 13 FKCKECGKAFRQNIHLASHLRIHTGEKPSGP 43
Score = 58.7 bits (143), Expect = 2e-11
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQPYKC 793
+ CK CGK F ++ +L HLR HTGE+P
Sbjct: 13 FKCKECGKAFRQNIHLASHLRIHTGEKPSGP 43
Score = 47.9 bits (115), Expect = 1e-07
Identities = 13/44 (29%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Query: 242 RHIRTHHVGARQHACQECGKTFATSSGLKQHTHIHSSVKPFRCE 285
+ G + C+ECGK F + L H IH+ KP
Sbjct: 2 SSGSSG-SGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPS 44
Score = 44.4 bits (106), Expect = 2e-06
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 271 QHTHIHSSVKPFRCEVCHKAYTQFSNLCRHKRMH 304
S KPF+C+ C KA+ Q +L H R+H
Sbjct: 2 SSGSSGSGEKPFKCKECGKAFRQNIHLASHLRIH 35
Score = 39.0 bits (92), Expect = 2e-04
Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 77 RHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 111
+ EKPFKC C + F Q +L HL+ H
Sbjct: 2 SSGS-SGSGEKPFKCKECGKAFRQNIHLASHLRIH 35
Score = 39.0 bits (92), Expect = 2e-04
Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 808 RHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 842
+ EKPFKC C + F Q +L HL+ H
Sbjct: 2 SSGS-SGSGEKPFKCKECGKAFRQNIHLASHLRIH 35
Score = 31.3 bits (72), Expect = 0.11
Identities = 11/34 (32%), Positives = 14/34 (41%), Gaps = 3/34 (8%)
Query: 216 HQAQVH-GRK-FPCENCTKVFSDPSNLQRHIRTH 247
G K F C+ C K F +L H+R H
Sbjct: 3 SG-SSGSGEKPFKCKECGKAFRQNIHLASHLRIH 35
Score = 27.5 bits (62), Expect = 2.4
Identities = 6/20 (30%), Positives = 10/20 (50%)
Query: 198 YRCESCSQTFCWRPHLNFHQ 217
++C+ C + F HL H
Sbjct: 13 FKCKECGKAFRQNIHLASHL 32
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 67.9 bits (167), Expect = 1e-14
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 49 RHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 91
+ TGE+PYKC C + F+ +S+L RH IH EKP
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRHRG-IHTGEKPSGP 43
Score = 67.9 bits (167), Expect = 1e-14
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 780 RHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 822
+ TGE+PYKC C + F+ +S+L RH IH EKP
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRHRG-IHTGEKPSGP 43
Score = 57.9 bits (141), Expect = 3e-11
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQPYKC 62
Y C CGKVF ++++L RH HTGE+P
Sbjct: 13 YKCNECGKVFTQNSHLVRHRGIHTGEKPSGP 43
Score = 57.9 bits (141), Expect = 3e-11
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQPYKC 793
Y C CGKVF ++++L RH HTGE+P
Sbjct: 13 YKCNECGKVFTQNSHLVRHRGIHTGEKPSGP 43
Score = 47.1 bits (113), Expect = 2e-07
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 242 RHIRTHHVGARQHACQECGKTFATSSGLKQHTHIHSSVKPFRCE 285
+ G + + C ECGK F +S L +H IH+ KP
Sbjct: 2 SSGSSG-TGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPS 44
Score = 44.4 bits (106), Expect = 2e-06
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 272 HTHIHSSVKPFRCEVCHKAYTQFSNLCRHKRMH 304
+ KP++C C K +TQ S+L RH+ +H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIH 35
Score = 39.4 bits (93), Expect = 1e-04
Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 77 RHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 111
EKP+KC C + F Q ++L RH H
Sbjct: 2 SSGS-SGTGEKPYKCNECGKVFTQNSHLVRHRGIH 35
Score = 39.4 bits (93), Expect = 1e-04
Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 808 RHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 842
EKP+KC C + F Q ++L RH H
Sbjct: 2 SSGS-SGTGEKPYKCNECGKVFTQNSHLVRHRGIH 35
Score = 31.3 bits (72), Expect = 0.089
Identities = 12/34 (35%), Positives = 15/34 (44%), Gaps = 3/34 (8%)
Query: 216 HQAQVH-GRK-FPCENCTKVFSDPSNLQRHIRTH 247
G K + C C KVF+ S+L RH H
Sbjct: 3 SG-SSGTGEKPYKCNECGKVFTQNSHLVRHRGIH 35
Score = 26.3 bits (59), Expect = 5.8
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 198 YRCESCSQTFCWRPHLNFHQ 217
Y+C C + F HL H+
Sbjct: 13 YKCNECGKVFTQNSHLVRHR 32
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 67.9 bits (167), Expect = 1e-14
Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 49 RHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 91
+ TGE+PYKC C + F +S L RH R IH EKP
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRHQR-IHTGEKPSGP 43
Score = 67.9 bits (167), Expect = 1e-14
Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 780 RHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 822
+ TGE+PYKC C + F +S L RH R IH EKP
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRHQR-IHTGEKPSGP 43
Score = 57.9 bits (141), Expect = 4e-11
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQPYKC 62
Y C CGKVF ++ L+RH R HTGE+P
Sbjct: 13 YKCNECGKVFRHNSYLSRHQRIHTGEKPSGP 43
Score = 57.9 bits (141), Expect = 4e-11
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQPYKC 793
Y C CGKVF ++ L+RH R HTGE+P
Sbjct: 13 YKCNECGKVFRHNSYLSRHQRIHTGEKPSGP 43
Score = 47.9 bits (115), Expect = 1e-07
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 242 RHIRTHHVGARQHACQECGKTFATSSGLKQHTHIHSSVKPFRCE 285
+ G + + C ECGK F +S L +H IH+ KP
Sbjct: 2 SSGSSG-TGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPS 44
Score = 45.2 bits (108), Expect = 1e-06
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 271 QHTHIHSSVKPFRCEVCHKAYTQFSNLCRHKRMH 304
+ KP++C C K + S L RH+R+H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIH 35
Score = 38.3 bits (90), Expect = 4e-04
Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 77 RHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 111
EKP+KC C + F + L RH + H
Sbjct: 2 SSGS-SGTGEKPYKCNECGKVFRHNSYLSRHQRIH 35
Score = 38.3 bits (90), Expect = 4e-04
Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 808 RHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 842
EKP+KC C + F + L RH + H
Sbjct: 2 SSGS-SGTGEKPYKCNECGKVFRHNSYLSRHQRIH 35
Score = 30.9 bits (71), Expect = 0.14
Identities = 13/34 (38%), Positives = 14/34 (41%), Gaps = 3/34 (8%)
Query: 216 HQAQVH-GRK-FPCENCTKVFSDPSNLQRHIRTH 247
G K + C C KVF S L RH R H
Sbjct: 3 SG-SSGTGEKPYKCNECGKVFRHNSYLSRHQRIH 35
Score = 28.2 bits (64), Expect = 1.2
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 198 YRCESCSQTFCWRPHLNFHQ 217
Y+C C + F +L+ HQ
Sbjct: 13 YKCNECGKVFRHNSYLSRHQ 32
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 67.9 bits (167), Expect = 1e-14
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 49 RHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 91
+ +GE+PYKC C + F+ +S+L H R IH EKP
Sbjct: 2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNHWR-IHTGEKPSGP 43
Score = 67.9 bits (167), Expect = 1e-14
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 780 RHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 822
+ +GE+PYKC C + F+ +S+L H R IH EKP
Sbjct: 2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNHWR-IHTGEKPSGP 43
Score = 58.7 bits (143), Expect = 2e-11
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQPYKC 62
Y C CGKVF ++++LT H R HTGE+P
Sbjct: 13 YKCNECGKVFTQNSHLTNHWRIHTGEKPSGP 43
Score = 58.7 bits (143), Expect = 2e-11
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQPYKC 793
Y C CGKVF ++++LT H R HTGE+P
Sbjct: 13 YKCNECGKVFTQNSHLTNHWRIHTGEKPSGP 43
Score = 47.9 bits (115), Expect = 1e-07
Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 242 RHIRTHHVGARQHACQECGKTFATSSGLKQHTHIHSSVKPFRC 284
+ G + + C ECGK F +S L H IH+ KP
Sbjct: 2 SSGSSG-SGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGP 43
Score = 45.2 bits (108), Expect = 1e-06
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 272 HTHIHSSVKPFRCEVCHKAYTQFSNLCRHKRMH 304
S KP++C C K +TQ S+L H R+H
Sbjct: 3 SGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIH 35
Score = 39.4 bits (93), Expect = 1e-04
Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 77 RHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 111
+ EKP+KC C + F Q ++L H + H
Sbjct: 2 SSGS-SGSGEKPYKCNECGKVFTQNSHLTNHWRIH 35
Score = 39.4 bits (93), Expect = 1e-04
Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 808 RHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 842
+ EKP+KC C + F Q ++L H + H
Sbjct: 2 SSGS-SGSGEKPYKCNECGKVFTQNSHLTNHWRIH 35
Score = 30.9 bits (71), Expect = 0.14
Identities = 12/34 (35%), Positives = 15/34 (44%), Gaps = 3/34 (8%)
Query: 216 HQAQVH-GRK-FPCENCTKVFSDPSNLQRHIRTH 247
G K + C C KVF+ S+L H R H
Sbjct: 3 SG-SSGSGEKPYKCNECGKVFTQNSHLTNHWRIH 35
Score = 27.5 bits (62), Expect = 2.5
Identities = 7/20 (35%), Positives = 9/20 (45%)
Query: 198 YRCESCSQTFCWRPHLNFHQ 217
Y+C C + F HL H
Sbjct: 13 YKCNECGKVFTQNSHLTNHW 32
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 67.9 bits (167), Expect = 1e-14
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 49 RHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 91
+ TGE+P++C+ C +SFS +S L H R IH E P
Sbjct: 2 SSGSSGTGEKPHECRECGKSFSFNSQLIVHQR-IHTGENPSGP 43
Score = 67.9 bits (167), Expect = 1e-14
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 780 RHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 822
+ TGE+P++C+ C +SFS +S L H R IH E P
Sbjct: 2 SSGSSGTGEKPHECRECGKSFSFNSQLIVHQR-IHTGENPSGP 43
Score = 56.4 bits (137), Expect = 1e-10
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQPYKC 62
+ C+ CGK F ++ L H R HTGE P
Sbjct: 13 HECRECGKSFSFNSQLIVHQRIHTGENPSGP 43
Score = 56.4 bits (137), Expect = 1e-10
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQPYKC 793
+ C+ CGK F ++ L H R HTGE P
Sbjct: 13 HECRECGKSFSFNSQLIVHQRIHTGENPSGP 43
Score = 50.2 bits (121), Expect = 2e-08
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 242 RHIRTHHVGARQHACQECGKTFATSSGLKQHTHIHSSVKPFRC 284
+ G + H C+ECGK+F+ +S L H IH+ P
Sbjct: 2 SSGSSG-TGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGP 43
Score = 41.0 bits (97), Expect = 3e-05
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 272 HTHIHSSVKPFRCEVCHKAYTQFSNLCRHKRMH 304
+ KP C C K+++ S L H+R+H
Sbjct: 3 SGSSGTGEKPHECRECGKSFSFNSQLIVHQRIH 35
Score = 35.2 bits (82), Expect = 0.003
Identities = 9/35 (25%), Positives = 13/35 (37%), Gaps = 1/35 (2%)
Query: 77 RHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 111
EKP +C C + F + L H + H
Sbjct: 2 SSGS-SGTGEKPHECRECGKSFSFNSQLIVHQRIH 35
Score = 35.2 bits (82), Expect = 0.003
Identities = 9/35 (25%), Positives = 13/35 (37%), Gaps = 1/35 (2%)
Query: 808 RHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 842
EKP +C C + F + L H + H
Sbjct: 2 SSGS-SGTGEKPHECRECGKSFSFNSQLIVHQRIH 35
Score = 29.8 bits (68), Expect = 0.29
Identities = 12/34 (35%), Positives = 12/34 (35%), Gaps = 3/34 (8%)
Query: 216 HQAQVH-GRK-FPCENCTKVFSDPSNLQRHIRTH 247
G K C C K FS S L H R H
Sbjct: 3 SG-SSGTGEKPHECRECGKSFSFNSQLIVHQRIH 35
Score = 27.1 bits (61), Expect = 2.8
Identities = 6/20 (30%), Positives = 10/20 (50%)
Query: 198 YRCESCSQTFCWRPHLNFHQ 217
+ C C ++F + L HQ
Sbjct: 13 HECRECGKSFSFNSQLIVHQ 32
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 67.6 bits (166), Expect = 1e-14
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 50 HLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 91
+ TGE+P++CK C +FS S +L +H+R H + P
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLR-SHERTDPSGP 43
Score = 67.6 bits (166), Expect = 1e-14
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 781 HLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 822
+ TGE+P++CK C +FS S +L +H+R H + P
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLR-SHERTDPSGP 43
Score = 58.0 bits (141), Expect = 3e-11
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQPYKC 62
+ CK CG F S +L +HLR+H P
Sbjct: 13 FQCKECGMNFSWSCSLFKHLRSHERTDPSGP 43
Score = 58.0 bits (141), Expect = 3e-11
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQPYKC 793
+ CK CG F S +L +HLR+H P
Sbjct: 13 FQCKECGMNFSWSCSLFKHLRSHERTDPSGP 43
Score = 46.8 bits (112), Expect = 3e-07
Identities = 11/42 (26%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 243 HIRTHHVGARQHACQECGKTFATSSGLKQHTHIHSSVKPFRC 284
+ G + C+ECG F+ S L +H H P
Sbjct: 3 SGSSG-TGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGP 43
Score = 41.8 bits (99), Expect = 2e-05
Identities = 9/34 (26%), Positives = 16/34 (47%)
Query: 271 QHTHIHSSVKPFRCEVCHKAYTQFSNLCRHKRMH 304
+ KPF+C+ C ++ +L +H R H
Sbjct: 2 SSGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSH 35
Score = 36.4 bits (85), Expect = 0.001
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 225 FPCENCTKVFSDPSNLQRHIRTH 247
F C+ C FS +L +H+R+H
Sbjct: 13 FQCKECGMNFSWSCSLFKHLRSH 35
Score = 36.0 bits (84), Expect = 0.002
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 81 NIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 111
+ EKPF+C C F +L +HL+ H
Sbjct: 5 SSGTGEKPFQCKECGMNFSWSCSLFKHLRSH 35
Score = 36.0 bits (84), Expect = 0.002
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 812 NIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 842
+ EKPF+C C F +L +HL+ H
Sbjct: 5 SSGTGEKPFQCKECGMNFSWSCSLFKHLRSH 35
Score = 26.4 bits (59), Expect = 4.9
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 312 KCVKCDQSFSTVTSLSKHKR 331
+C +C +FS SL KH R
Sbjct: 14 QCKECGMNFSWSCSLFKHLR 33
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 67.6 bits (166), Expect = 1e-14
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 50 HLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 91
+ GE+ YKC C + FS SS+LQ H R +H EKP
Sbjct: 3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQR-VHTGEKPSGP 43
Score = 67.6 bits (166), Expect = 1e-14
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 781 HLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 822
+ GE+ YKC C + FS SS+LQ H R +H EKP
Sbjct: 3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQR-VHTGEKPSGP 43
Score = 57.5 bits (140), Expect = 6e-11
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQPYKC 62
Y C CGK F +S++L H R HTGE+P
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTGEKPSGP 43
Score = 57.5 bits (140), Expect = 6e-11
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQPYKC 793
Y C CGK F +S++L H R HTGE+P
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTGEKPSGP 43
Score = 46.0 bits (110), Expect = 5e-07
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 243 HIRTHHVGARQHACQECGKTFATSSGLKQHTHIHSSVKPFRC 284
+ +G + + C CGK F+ SS L+ H +H+ KP
Sbjct: 3 SGSSG-MGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGP 43
Score = 45.2 bits (108), Expect = 1e-06
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 272 HTHIHSSVKPFRCEVCHKAYTQFSNLCRHKRMH 304
K ++C+VC K ++Q S+L H+R+H
Sbjct: 3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVH 35
Score = 36.7 bits (86), Expect = 0.001
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 78 HVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 111
EK +KC +C + F Q ++L H + H
Sbjct: 3 SGS-SGMGEKCYKCDVCGKEFSQSSHLQTHQRVH 35
Score = 36.7 bits (86), Expect = 0.001
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 809 HVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 842
EK +KC +C + F Q ++L H + H
Sbjct: 3 SGS-SGMGEKCYKCDVCGKEFSQSSHLQTHQRVH 35
Score = 32.1 bits (74), Expect = 0.044
Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 3/34 (8%)
Query: 216 HQAQVH-GRK-FPCENCTKVFSDPSNLQRHIRTH 247
G K + C+ C K FS S+LQ H R H
Sbjct: 3 SG-SSGMGEKCYKCDVCGKEFSQSSHLQTHQRVH 35
Score = 27.1 bits (61), Expect = 3.5
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 198 YRCESCSQTFCWRPHLNFHQ 217
Y+C+ C + F HL HQ
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQ 32
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 67.5 bits (166), Expect = 1e-14
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 49 RHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 91
+ TGE+P+KC C +S++ +L +H R +H EKP
Sbjct: 2 SSGSSGTGEKPFKCGECGKSYNQRVHLTQHQR-VHTGEKPSGP 43
Score = 67.5 bits (166), Expect = 1e-14
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 780 RHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 822
+ TGE+P+KC C +S++ +L +H R +H EKP
Sbjct: 2 SSGSSGTGEKPFKCGECGKSYNQRVHLTQHQR-VHTGEKPSGP 43
Score = 58.3 bits (142), Expect = 2e-11
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQPYKC 62
+ C CGK + + +LT+H R HTGE+P
Sbjct: 13 FKCGECGKSYNQRVHLTQHQRVHTGEKPSGP 43
Score = 58.3 bits (142), Expect = 2e-11
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQPYKC 793
+ C CGK + + +LT+H R HTGE+P
Sbjct: 13 FKCGECGKSYNQRVHLTQHQRVHTGEKPSGP 43
Score = 47.9 bits (115), Expect = 1e-07
Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 242 RHIRTHHVGARQHACQECGKTFATSSGLKQHTHIHSSVKPFRC 284
+ G + C ECGK++ L QH +H+ KP
Sbjct: 2 SSGSSG-TGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGP 43
Score = 43.7 bits (104), Expect = 4e-06
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 272 HTHIHSSVKPFRCEVCHKAYTQFSNLCRHKRMH 304
+ KPF+C C K+Y Q +L +H+R+H
Sbjct: 3 SGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVH 35
Score = 39.0 bits (92), Expect = 1e-04
Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 77 RHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 111
EKPFKC C + + Q+ +L +H + H
Sbjct: 2 SSGS-SGTGEKPFKCGECGKSYNQRVHLTQHQRVH 35
Score = 39.0 bits (92), Expect = 1e-04
Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 808 RHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 842
EKPFKC C + + Q+ +L +H + H
Sbjct: 2 SSGS-SGTGEKPFKCGECGKSYNQRVHLTQHQRVH 35
Score = 30.6 bits (70), Expect = 0.16
Identities = 10/34 (29%), Positives = 14/34 (41%), Gaps = 3/34 (8%)
Query: 216 HQAQVH-GRK-FPCENCTKVFSDPSNLQRHIRTH 247
G K F C C K ++ +L +H R H
Sbjct: 3 SG-SSGTGEKPFKCGECGKSYNQRVHLTQHQRVH 35
Score = 27.9 bits (63), Expect = 1.7
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 198 YRCESCSQTFCWRPHLNFHQ 217
++C C +++ R HL HQ
Sbjct: 13 FKCGECGKSYNQRVHLTQHQ 32
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 46
Score = 67.6 bits (166), Expect = 1e-14
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 49 RHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 91
+ TG++PY+C C ++F S+L H R H EKP
Sbjct: 2 SSGSSGTGQRPYECIECGKAFKTKSSLICHRR-SHTGEKPSGP 43
Score = 67.6 bits (166), Expect = 1e-14
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 780 RHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 822
+ TG++PY+C C ++F S+L H R H EKP
Sbjct: 2 SSGSSGTGQRPYECIECGKAFKTKSSLICHRR-SHTGEKPSGP 43
Score = 57.2 bits (139), Expect = 6e-11
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQPYKCK 63
Y C CGK F ++L H R+HTGE+P
Sbjct: 13 YECIECGKAFKTKSSLICHRRSHTGEKPSGPS 44
Score = 57.2 bits (139), Expect = 6e-11
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQPYKCK 794
Y C CGK F ++L H R+HTGE+P
Sbjct: 13 YECIECGKAFKTKSSLICHRRSHTGEKPSGPS 44
Score = 49.1 bits (118), Expect = 4e-08
Identities = 15/43 (34%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 242 RHIRTHHVGARQHACQECGKTFATSSGLKQHTHIHSSVKPFRC 284
+ G R + C ECGK F T S L H H+ KP
Sbjct: 2 SSGSSG-TGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGP 43
Score = 43.3 bits (103), Expect = 5e-06
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 271 QHTHIHSSVKPFRCEVCHKAYTQFSNLCRHKRMH 304
+ +P+ C C KA+ S+L H+R H
Sbjct: 2 SSGSSGTGQRPYECIECGKAFKTKSSLICHRRSH 35
Score = 36.0 bits (84), Expect = 0.002
Identities = 7/35 (20%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 77 RHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 111
++P++C C + F +++L H + H
Sbjct: 2 SSGS-SGTGQRPYECIECGKAFKTKSSLICHRRSH 35
Score = 36.0 bits (84), Expect = 0.002
Identities = 7/35 (20%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 808 RHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 842
++P++C C + F +++L H + H
Sbjct: 2 SSGS-SGTGQRPYECIECGKAFKTKSSLICHRRSH 35
Score = 32.1 bits (74), Expect = 0.046
Identities = 11/45 (24%), Positives = 17/45 (37%), Gaps = 4/45 (8%)
Query: 216 HQAQVH-GRK-FPCENCTKVFSDPSNLQRHIRTHHVGARQHACQE 258
G++ + C C K F S+L H R+ H G +
Sbjct: 3 SG-SSGTGQRPYECIECGKAFKTKSSLICHRRS-HTGEKPSGPSS 45
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 67.5 bits (166), Expect = 1e-14
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 50 HLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 91
+ TGE+PY+C C ++FS ++L +H R +H+ EKP
Sbjct: 3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQR-VHSGEKPSGP 43
Score = 67.5 bits (166), Expect = 1e-14
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 781 HLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 822
+ TGE+PY+C C ++FS ++L +H R +H+ EKP
Sbjct: 3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQR-VHSGEKPSGP 43
Score = 57.9 bits (141), Expect = 4e-11
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQPYKC 62
Y C C K F A+LT+H R H+GE+P
Sbjct: 13 YECDVCRKAFSHHASLTQHQRVHSGEKPSGP 43
Score = 57.9 bits (141), Expect = 4e-11
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQPYKC 793
Y C C K F A+LT+H R H+GE+P
Sbjct: 13 YECDVCRKAFSHHASLTQHQRVHSGEKPSGP 43
Score = 47.1 bits (113), Expect = 3e-07
Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 243 HIRTHHVGARQHACQECGKTFATSSGLKQHTHIHSSVKPFRCE 285
+ G + + C C K F+ + L QH +HS KP
Sbjct: 3 SGSSG-TGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPS 44
Score = 44.8 bits (107), Expect = 1e-06
Identities = 11/34 (32%), Positives = 21/34 (61%)
Query: 271 QHTHIHSSVKPFRCEVCHKAYTQFSNLCRHKRMH 304
+ KP+ C+VC KA++ ++L +H+R+H
Sbjct: 2 SSGSSGTGEKPYECDVCRKAFSHHASLTQHQRVH 35
Score = 33.2 bits (77), Expect = 0.017
Identities = 9/34 (26%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 78 HVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 111
EKP++C +C + F +L +H + H
Sbjct: 3 SGS-SGTGEKPYECDVCRKAFSHHASLTQHQRVH 35
Score = 33.2 bits (77), Expect = 0.017
Identities = 9/34 (26%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 809 HVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 842
EKP++C +C + F +L +H + H
Sbjct: 3 SGS-SGTGEKPYECDVCRKAFSHHASLTQHQRVH 35
Score = 31.7 bits (73), Expect = 0.073
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 227 CENCTKVFSDPSNLQRHIRTH 247
C+ C K FS ++L +H R H
Sbjct: 15 CDVCRKAFSHHASLTQHQRVH 35
Score = 26.3 bits (59), Expect = 5.6
Identities = 7/20 (35%), Positives = 9/20 (45%)
Query: 198 YRCESCSQTFCWRPHLNFHQ 217
Y C+ C + F L HQ
Sbjct: 13 YECDVCRKAFSHHASLTQHQ 32
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 67.2 bits (165), Expect = 2e-14
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 49 RHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 91
+ TGE+PYKC C + F+ +S+L H R IH KP
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLANHQR-IHTGVKPSGP 43
Score = 67.2 bits (165), Expect = 2e-14
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 780 RHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 822
+ TGE+PYKC C + F+ +S+L H R IH KP
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLANHQR-IHTGVKPSGP 43
Score = 57.5 bits (140), Expect = 4e-11
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQPYKC 62
Y C CGKVF ++++L H R HTG +P
Sbjct: 13 YKCNECGKVFTQNSHLANHQRIHTGVKPSGP 43
Score = 57.5 bits (140), Expect = 4e-11
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQPYKC 793
Y C CGKVF ++++L H R HTG +P
Sbjct: 13 YKCNECGKVFTQNSHLANHQRIHTGVKPSGP 43
Score = 47.5 bits (114), Expect = 2e-07
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 242 RHIRTHHVGARQHACQECGKTFATSSGLKQHTHIHSSVKPFRCE 285
+ G + + C ECGK F +S L H IH+ VKP
Sbjct: 2 SSGSSG-TGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPS 44
Score = 43.7 bits (104), Expect = 4e-06
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 272 HTHIHSSVKPFRCEVCHKAYTQFSNLCRHKRMH 304
+ KP++C C K +TQ S+L H+R+H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLANHQRIH 35
Score = 38.3 bits (90), Expect = 3e-04
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 77 RHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 111
EKP+KC C + F Q ++L H + H
Sbjct: 2 SSGS-SGTGEKPYKCNECGKVFTQNSHLANHQRIH 35
Score = 38.3 bits (90), Expect = 3e-04
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 808 RHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 842
EKP+KC C + F Q ++L H + H
Sbjct: 2 SSGS-SGTGEKPYKCNECGKVFTQNSHLANHQRIH 35
Score = 30.6 bits (70), Expect = 0.17
Identities = 12/34 (35%), Positives = 15/34 (44%), Gaps = 3/34 (8%)
Query: 216 HQAQVH-GRK-FPCENCTKVFSDPSNLQRHIRTH 247
G K + C C KVF+ S+L H R H
Sbjct: 3 SG-SSGTGEKPYKCNECGKVFTQNSHLANHQRIH 35
Score = 26.7 bits (60), Expect = 3.7
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 198 YRCESCSQTFCWRPHLNFHQ 217
Y+C C + F HL HQ
Sbjct: 13 YKCNECGKVFTQNSHLANHQ 32
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 67.1 bits (165), Expect = 2e-14
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 49 RHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 91
+ TGE+P+KC C +SF S++L +H R IH EKP
Sbjct: 2 SSGSSGTGERPHKCNECGKSFIQSAHLIQHQR-IHTGEKPSGP 43
Score = 67.1 bits (165), Expect = 2e-14
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 780 RHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 822
+ TGE+P+KC C +SF S++L +H R IH EKP
Sbjct: 2 SSGSSGTGERPHKCNECGKSFIQSAHLIQHQR-IHTGEKPSGP 43
Score = 57.5 bits (140), Expect = 5e-11
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQPYKC 62
+ C CGK F +SA+L +H R HTGE+P
Sbjct: 13 HKCNECGKSFIQSAHLIQHQRIHTGEKPSGP 43
Score = 57.5 bits (140), Expect = 5e-11
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQPYKC 793
+ C CGK F +SA+L +H R HTGE+P
Sbjct: 13 HKCNECGKSFIQSAHLIQHQRIHTGEKPSGP 43
Score = 49.4 bits (119), Expect = 3e-08
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 242 RHIRTHHVGARQHACQECGKTFATSSGLKQHTHIHSSVKPFRCE 285
+ G R H C ECGK+F S+ L QH IH+ KP
Sbjct: 2 SSGSSG-TGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPS 44
Score = 42.1 bits (100), Expect = 1e-05
Identities = 9/34 (26%), Positives = 19/34 (55%)
Query: 271 QHTHIHSSVKPFRCEVCHKAYTQFSNLCRHKRMH 304
+ +P +C C K++ Q ++L +H+R+H
Sbjct: 2 SSGSSGTGERPHKCNECGKSFIQSAHLIQHQRIH 35
Score = 38.3 bits (90), Expect = 4e-04
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 77 RHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 111
E+P KC C + F Q +L +H + H
Sbjct: 2 SSGS-SGTGERPHKCNECGKSFIQSAHLIQHQRIH 35
Score = 38.3 bits (90), Expect = 4e-04
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 808 RHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 842
E+P KC C + F Q +L +H + H
Sbjct: 2 SSGS-SGTGERPHKCNECGKSFIQSAHLIQHQRIH 35
Score = 30.2 bits (69), Expect = 0.26
Identities = 9/34 (26%), Positives = 13/34 (38%), Gaps = 3/34 (8%)
Query: 216 HQAQVH-GRK-FPCENCTKVFSDPSNLQRHIRTH 247
G + C C K F ++L +H R H
Sbjct: 3 SG-SSGTGERPHKCNECGKSFIQSAHLIQHQRIH 35
Score = 26.7 bits (60), Expect = 3.8
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 198 YRCESCSQTFCWRPHLNFHQ 217
++C C ++F HL HQ
Sbjct: 13 HKCNECGKSFIQSAHLIQHQ 32
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 67.2 bits (165), Expect = 2e-14
Identities = 19/42 (45%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 50 HLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 91
+ TGE+PYKC C +SF S+L H R IH EKP
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQR-IHTGEKPSGP 43
Score = 67.2 bits (165), Expect = 2e-14
Identities = 19/42 (45%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 781 HLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 822
+ TGE+PYKC C +SF S+L H R IH EKP
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQR-IHTGEKPSGP 43
Score = 57.9 bits (141), Expect = 4e-11
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQPYKC 62
Y C C K F ++LT H R HTGE+P
Sbjct: 13 YKCDVCHKSFRYGSSLTVHQRIHTGEKPSGP 43
Score = 57.9 bits (141), Expect = 4e-11
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQPYKC 793
Y C C K F ++LT H R HTGE+P
Sbjct: 13 YKCDVCHKSFRYGSSLTVHQRIHTGEKPSGP 43
Score = 46.4 bits (111), Expect = 4e-07
Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 243 HIRTHHVGARQHACQECGKTFATSSGLKQHTHIHSSVKPFRC 284
+ G + + C C K+F S L H IH+ KP
Sbjct: 3 SGSSG-TGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGP 43
Score = 46.0 bits (110), Expect = 6e-07
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 271 QHTHIHSSVKPFRCEVCHKAYTQFSNLCRHKRMH 304
+ KP++C+VCHK++ S+L H+R+H
Sbjct: 2 SSGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIH 35
Score = 35.2 bits (82), Expect = 0.004
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 78 HVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 111
EKP+KC +C + F ++L H + H
Sbjct: 3 SGS-SGTGEKPYKCDVCHKSFRYGSSLTVHQRIH 35
Score = 35.2 bits (82), Expect = 0.004
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 809 HVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 842
EKP+KC +C + F ++L H + H
Sbjct: 3 SGS-SGTGEKPYKCDVCHKSFRYGSSLTVHQRIH 35
Score = 30.6 bits (70), Expect = 0.15
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 227 CENCTKVFSDPSNLQRHIRTH 247
C+ C K F S+L H R H
Sbjct: 15 CDVCHKSFRYGSSLTVHQRIH 35
Score = 27.9 bits (63), Expect = 1.6
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 198 YRCESCSQTFCWRPHLNFHQ 217
Y+C+ C ++F + L HQ
Sbjct: 13 YKCDVCHKSFRYGSSLTVHQ 32
Score = 25.9 bits (58), Expect = 6.9
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 312 KCVKCDQSFSTVTSLSKHKR 331
KC C +SF +SL+ H+R
Sbjct: 14 KCDVCHKSFRYGSSLTVHQR 33
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 67.1 bits (165), Expect = 2e-14
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 49 RHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 91
+ TGE+PY+C C ++F+ +NL +H R IH EKP
Sbjct: 2 SSGSSGTGEKPYRCGECGKAFAQKANLTQHQR-IHTGEKPSGP 43
Score = 67.1 bits (165), Expect = 2e-14
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 780 RHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 822
+ TGE+PY+C C ++F+ +NL +H R IH EKP
Sbjct: 2 SSGSSGTGEKPYRCGECGKAFAQKANLTQHQR-IHTGEKPSGP 43
Score = 57.9 bits (141), Expect = 3e-11
Identities = 17/31 (54%), Positives = 20/31 (64%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQPYKC 62
Y C CGK F + ANLT+H R HTGE+P
Sbjct: 13 YRCGECGKAFAQKANLTQHQRIHTGEKPSGP 43
Score = 57.9 bits (141), Expect = 3e-11
Identities = 17/31 (54%), Positives = 20/31 (64%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQPYKC 793
Y C CGK F + ANLT+H R HTGE+P
Sbjct: 13 YRCGECGKAFAQKANLTQHQRIHTGEKPSGP 43
Score = 47.5 bits (114), Expect = 2e-07
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 242 RHIRTHHVGARQHACQECGKTFATSSGLKQHTHIHSSVKPFRC 284
+ G + + C ECGK FA + L QH IH+ KP
Sbjct: 2 SSGSSG-TGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGP 43
Score = 44.8 bits (107), Expect = 1e-06
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 271 QHTHIHSSVKPFRCEVCHKAYTQFSNLCRHKRMH 304
+ KP+RC C KA+ Q +NL +H+R+H
Sbjct: 2 SSGSSGTGEKPYRCGECGKAFAQKANLTQHQRIH 35
Score = 37.9 bits (89), Expect = 5e-04
Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 77 RHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 111
EKP++C C + F Q+ NL +H + H
Sbjct: 2 SSGS-SGTGEKPYRCGECGKAFAQKANLTQHQRIH 35
Score = 37.9 bits (89), Expect = 5e-04
Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 808 RHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 842
EKP++C C + F Q+ NL +H + H
Sbjct: 2 SSGS-SGTGEKPYRCGECGKAFAQKANLTQHQRIH 35
Score = 30.9 bits (71), Expect = 0.13
Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 3/34 (8%)
Query: 216 HQAQVH-GRK-FPCENCTKVFSDPSNLQRHIRTH 247
G K + C C K F+ +NL +H R H
Sbjct: 3 SG-SSGTGEKPYRCGECGKAFAQKANLTQHQRIH 35
Score = 27.9 bits (63), Expect = 1.6
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 198 YRCESCSQTFCWRPHLNFHQ 217
YRC C + F + +L HQ
Sbjct: 13 YRCGECGKAFAQKANLTQHQ 32
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 67.2 bits (165), Expect = 2e-14
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 49 RHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 91
+ +GE+P+KC+ C + F+ +S L H R +H EKP
Sbjct: 2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSHQR-VHTGEKPSGP 43
Score = 67.2 bits (165), Expect = 2e-14
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 780 RHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 822
+ +GE+P+KC+ C + F+ +S L H R +H EKP
Sbjct: 2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSHQR-VHTGEKPSGP 43
Score = 57.1 bits (139), Expect = 7e-11
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQPYKC 62
+ C+ CGK F +++ L H R HTGE+P
Sbjct: 13 FKCEECGKRFTQNSQLHSHQRVHTGEKPSGP 43
Score = 57.1 bits (139), Expect = 7e-11
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQPYKC 793
+ C+ CGK F +++ L H R HTGE+P
Sbjct: 13 FKCEECGKRFTQNSQLHSHQRVHTGEKPSGP 43
Score = 47.9 bits (115), Expect = 1e-07
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 242 RHIRTHHVGARQHACQECGKTFATSSGLKQHTHIHSSVKPFRC 284
+ G + C+ECGK F +S L H +H+ KP
Sbjct: 2 SSGSSG-SGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGP 43
Score = 44.8 bits (107), Expect = 2e-06
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 272 HTHIHSSVKPFRCEVCHKAYTQFSNLCRHKRMH 304
S KPF+CE C K +TQ S L H+R+H
Sbjct: 3 SGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVH 35
Score = 39.0 bits (92), Expect = 2e-04
Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 77 RHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 111
+ EKPFKC C + F Q + L H + H
Sbjct: 2 SSGS-SGSGEKPFKCEECGKRFTQNSQLHSHQRVH 35
Score = 39.0 bits (92), Expect = 2e-04
Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 808 RHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 842
+ EKPFKC C + F Q + L H + H
Sbjct: 2 SSGS-SGSGEKPFKCEECGKRFTQNSQLHSHQRVH 35
Score = 31.7 bits (73), Expect = 0.067
Identities = 13/34 (38%), Positives = 14/34 (41%), Gaps = 3/34 (8%)
Query: 216 HQAQVH-GRK-FPCENCTKVFSDPSNLQRHIRTH 247
G K F CE C K F+ S L H R H
Sbjct: 3 SG-SSGSGEKPFKCEECGKRFTQNSQLHSHQRVH 35
Score = 27.5 bits (62), Expect = 2.3
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 198 YRCESCSQTFCWRPHLNFHQ 217
++CE C + F L+ HQ
Sbjct: 13 FKCEECGKRFTQNSQLHSHQ 32
Score = 25.9 bits (58), Expect = 8.3
Identities = 7/33 (21%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 299 RHKRMHANCRMQIKCVKCDQSFSTVTSLSKHKR 331
+ + KC +C + F+ + L H+R
Sbjct: 2 SSGSSGSGEK-PFKCEECGKRFTQNSQLHSHQR 33
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 67.2 bits (165), Expect = 2e-14
Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 50 HLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 91
+ TGE+PY C C ++F+I SNL +H + IH K+KP
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRSNLIKHQK-IHTKQKPSGP 43
Score = 67.2 bits (165), Expect = 2e-14
Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 781 HLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 822
+ TGE+PY C C ++F+I SNL +H + IH K+KP
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRSNLIKHQK-IHTKQKPSGP 43
Score = 57.9 bits (141), Expect = 3e-11
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQPYKC 62
Y C CGK F +NL +H + HT ++P
Sbjct: 13 YICAECGKAFTIRSNLIKHQKIHTKQKPSGP 43
Score = 57.9 bits (141), Expect = 3e-11
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQPYKC 793
Y C CGK F +NL +H + HT ++P
Sbjct: 13 YICAECGKAFTIRSNLIKHQKIHTKQKPSGP 43
Score = 45.6 bits (109), Expect = 8e-07
Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 243 HIRTHHVGARQHACQECGKTFATSSGLKQHTHIHSSVKPFRCE 285
+ G + + C ECGK F S L +H IH+ KP
Sbjct: 3 SGSSG-TGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPS 44
Score = 44.0 bits (105), Expect = 3e-06
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 272 HTHIHSSVKPFRCEVCHKAYTQFSNLCRHKRMH 304
+ KP+ C C KA+T SNL +H+++H
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRSNLIKHQKIH 35
Score = 36.3 bits (85), Expect = 0.002
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 78 HVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 111
EKP+ C C + F ++NL +H K H
Sbjct: 3 SGS-SGTGEKPYICAECGKAFTIRSNLIKHQKIH 35
Score = 36.3 bits (85), Expect = 0.002
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 809 HVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 842
EKP+ C C + F ++NL +H K H
Sbjct: 3 SGS-SGTGEKPYICAECGKAFTIRSNLIKHQKIH 35
Score = 32.1 bits (74), Expect = 0.052
Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 3/34 (8%)
Query: 216 HQAQVH-GRK-FPCENCTKVFSDPSNLQRHIRTH 247
G K + C C K F+ SNL +H + H
Sbjct: 3 SG-SSGTGEKPYICAECGKAFTIRSNLIKHQKIH 35
Score = 26.7 bits (60), Expect = 3.9
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 198 YRCESCSQTFCWRPHLNFHQ 217
Y C C + F R +L HQ
Sbjct: 13 YICAECGKAFTIRSNLIKHQ 32
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 67.1 bits (165), Expect = 2e-14
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 50 HLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 91
+ TGE+PY+C C+++F+ SNL H R H E
Sbjct: 3 SGSSGTGEKPYECNECQKAFNTKSNLMVHQR-THTGESGPSS 43
Score = 67.1 bits (165), Expect = 2e-14
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 781 HLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 822
+ TGE+PY+C C+++F+ SNL H R H E
Sbjct: 3 SGSSGTGEKPYECNECQKAFNTKSNLMVHQR-THTGESGPSS 43
Score = 57.9 bits (141), Expect = 4e-11
Identities = 14/31 (45%), Positives = 15/31 (48%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQPYKC 62
Y C C K F +NL H RTHTGE
Sbjct: 13 YECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 57.9 bits (141), Expect = 4e-11
Identities = 14/31 (45%), Positives = 15/31 (48%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQPYKC 793
Y C C K F +NL H RTHTGE
Sbjct: 13 YECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 45.2 bits (108), Expect = 9e-07
Identities = 11/42 (26%), Positives = 15/42 (35%), Gaps = 1/42 (2%)
Query: 243 HIRTHHVGARQHACQECGKTFATSSGLKQHTHIHSSVKPFRC 284
+ G + + C EC K F T S L H H+
Sbjct: 3 SGSSG-TGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 41.7 bits (99), Expect = 2e-05
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 272 HTHIHSSVKPFRCEVCHKAYTQFSNLCRHKRMH 304
+ KP+ C C KA+ SNL H+R H
Sbjct: 3 SGSSGTGEKPYECNECQKAFNTKSNLMVHQRTH 35
Score = 35.9 bits (84), Expect = 0.002
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 78 HVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 111
EKP++C C + F ++NL H + H
Sbjct: 3 SGS-SGTGEKPYECNECQKAFNTKSNLMVHQRTH 35
Score = 35.9 bits (84), Expect = 0.002
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 809 HVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 842
EKP++C C + F ++NL H + H
Sbjct: 3 SGS-SGTGEKPYECNECQKAFNTKSNLMVHQRTH 35
Score = 32.5 bits (75), Expect = 0.038
Identities = 13/34 (38%), Positives = 15/34 (44%), Gaps = 3/34 (8%)
Query: 216 HQAQVH-GRK-FPCENCTKVFSDPSNLQRHIRTH 247
G K + C C K F+ SNL H RTH
Sbjct: 3 SG-SSGTGEKPYECNECQKAFNTKSNLMVHQRTH 35
Score = 26.3 bits (59), Expect = 6.6
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 198 YRCESCSQTFCWRPHLNFHQ 217
Y C C + F + +L HQ
Sbjct: 13 YECNECQKAFNTKSNLMVHQ 32
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 67.1 bits (165), Expect = 2e-14
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 49 RHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 91
+ TGE+PY+C C ++F+ SNL H + IH EKP
Sbjct: 2 SSGSSGTGEKPYRCAECGKAFTDRSNLFTHQK-IHTGEKPSGP 43
Score = 67.1 bits (165), Expect = 2e-14
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 780 RHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 822
+ TGE+PY+C C ++F+ SNL H + IH EKP
Sbjct: 2 SSGSSGTGEKPYRCAECGKAFTDRSNLFTHQK-IHTGEKPSGP 43
Score = 56.4 bits (137), Expect = 1e-10
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQPYKC 62
Y C CGK F +NL H + HTGE+P
Sbjct: 13 YRCAECGKAFTDRSNLFTHQKIHTGEKPSGP 43
Score = 56.4 bits (137), Expect = 1e-10
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQPYKC 793
Y C CGK F +NL H + HTGE+P
Sbjct: 13 YRCAECGKAFTDRSNLFTHQKIHTGEKPSGP 43
Score = 45.6 bits (109), Expect = 8e-07
Identities = 14/44 (31%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Query: 242 RHIRTHHVGARQHACQECGKTFATSSGLKQHTHIHSSVKPFRCE 285
+ G + + C ECGK F S L H IH+ KP
Sbjct: 2 SSGSSG-TGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGPS 44
Score = 43.7 bits (104), Expect = 4e-06
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 271 QHTHIHSSVKPFRCEVCHKAYTQFSNLCRHKRMH 304
+ KP+RC C KA+T SNL H+++H
Sbjct: 2 SSGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIH 35
Score = 38.6 bits (91), Expect = 2e-04
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 77 RHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 111
EKP++C C + F ++NL H K H
Sbjct: 2 SSGS-SGTGEKPYRCAECGKAFTDRSNLFTHQKIH 35
Score = 38.6 bits (91), Expect = 2e-04
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 808 RHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 842
EKP++C C + F ++NL H K H
Sbjct: 2 SSGS-SGTGEKPYRCAECGKAFTDRSNLFTHQKIH 35
Score = 31.7 bits (73), Expect = 0.066
Identities = 12/34 (35%), Positives = 15/34 (44%), Gaps = 3/34 (8%)
Query: 216 HQAQVH-GRK-FPCENCTKVFSDPSNLQRHIRTH 247
G K + C C K F+D SNL H + H
Sbjct: 3 SG-SSGTGEKPYRCAECGKAFTDRSNLFTHQKIH 35
Score = 26.7 bits (60), Expect = 4.3
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 198 YRCESCSQTFCWRPHLNFHQ 217
YRC C + F R +L HQ
Sbjct: 13 YRCAECGKAFTDRSNLFTHQ 32
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 67.2 bits (165), Expect = 2e-14
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 49 RHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 91
+ TGE+PY+C C ++FS+ S+L H IH +KP
Sbjct: 2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTHQA-IHTGKKPSGP 43
Score = 67.2 bits (165), Expect = 2e-14
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 780 RHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 822
+ TGE+PY+C C ++FS+ S+L H IH +KP
Sbjct: 2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTHQA-IHTGKKPSGP 43
Score = 57.2 bits (139), Expect = 8e-11
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQPYKCK 63
Y C CGK F ++LT H HTG++P
Sbjct: 13 YECNQCGKAFSVRSSLTTHQAIHTGKKPSGPS 44
Score = 57.2 bits (139), Expect = 8e-11
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQPYKCK 794
Y C CGK F ++LT H HTG++P
Sbjct: 13 YECNQCGKAFSVRSSLTTHQAIHTGKKPSGPS 44
Score = 47.1 bits (113), Expect = 2e-07
Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Query: 242 RHIRTHHVGARQHACQECGKTFATSSGLKQHTHIHSSVKPFRCE 285
+ G + + C +CGK F+ S L H IH+ KP
Sbjct: 2 SSGSSG-TGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPS 44
Score = 43.3 bits (103), Expect = 6e-06
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 271 QHTHIHSSVKPFRCEVCHKAYTQFSNLCRHKRMH 304
+ KP+ C C KA++ S+L H+ +H
Sbjct: 2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIH 35
Score = 35.6 bits (83), Expect = 0.003
Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 77 RHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 111
EKP++C C + F +++L H H
Sbjct: 2 SSGS-SGTGEKPYECNQCGKAFSVRSSLTTHQAIH 35
Score = 35.6 bits (83), Expect = 0.003
Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 808 RHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 842
EKP++C C + F +++L H H
Sbjct: 2 SSGS-SGTGEKPYECNQCGKAFSVRSSLTTHQAIH 35
Score = 30.6 bits (70), Expect = 0.16
Identities = 11/34 (32%), Positives = 13/34 (38%), Gaps = 3/34 (8%)
Query: 216 HQAQVH-GRK-FPCENCTKVFSDPSNLQRHIRTH 247
G K + C C K FS S+L H H
Sbjct: 3 SG-SSGTGEKPYECNQCGKAFSVRSSLTTHQAIH 35
Score = 26.3 bits (59), Expect = 5.2
Identities = 8/20 (40%), Positives = 9/20 (45%)
Query: 198 YRCESCSQTFCWRPHLNFHQ 217
Y C C + F R L HQ
Sbjct: 13 YECNQCGKAFSVRSSLTTHQ 32
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 67.1 bits (165), Expect = 2e-14
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 49 RHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 91
+ TGE+PYKC C ++F+ S L H + H E+
Sbjct: 2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQ-SHTGERHSGP 43
Score = 67.1 bits (165), Expect = 2e-14
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 780 RHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 822
+ TGE+PYKC C ++F+ S L H + H E+
Sbjct: 2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQ-SHTGERHSGP 43
Score = 56.7 bits (138), Expect = 9e-11
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQPYKC 62
Y C CGK F R + L H ++HTGE+
Sbjct: 13 YKCSDCGKAFTRKSGLHIHQQSHTGERHSGP 43
Score = 56.7 bits (138), Expect = 9e-11
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQPYKC 793
Y C CGK F R + L H ++HTGE+
Sbjct: 13 YKCSDCGKAFTRKSGLHIHQQSHTGERHSGP 43
Score = 46.3 bits (111), Expect = 4e-07
Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 242 RHIRTHHVGARQHACQECGKTFATSSGLKQHTHIHSSVKPFRC 284
+ G + + C +CGK F SGL H H+ +
Sbjct: 2 SSGSSG-TGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGP 43
Score = 41.7 bits (99), Expect = 2e-05
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 271 QHTHIHSSVKPFRCEVCHKAYTQFSNLCRHKRMH 304
+ KP++C C KA+T+ S L H++ H
Sbjct: 2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSH 35
Score = 39.4 bits (93), Expect = 1e-04
Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 77 RHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 111
EKP+KC C + F +++ L H + H
Sbjct: 2 SSGS-SGTGEKPYKCSDCGKAFTRKSGLHIHQQSH 35
Score = 39.4 bits (93), Expect = 1e-04
Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 808 RHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 842
EKP+KC C + F +++ L H + H
Sbjct: 2 SSGS-SGTGEKPYKCSDCGKAFTRKSGLHIHQQSH 35
Score = 30.2 bits (69), Expect = 0.24
Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 3/34 (8%)
Query: 216 HQAQVH-GRK-FPCENCTKVFSDPSNLQRHIRTH 247
G K + C +C K F+ S L H ++H
Sbjct: 3 SG-SSGTGEKPYKCSDCGKAFTRKSGLHIHQQSH 35
Score = 26.7 bits (60), Expect = 3.9
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 198 YRCESCSQTFCWRPHLNFHQ 217
Y+C C + F + L+ HQ
Sbjct: 13 YKCSDCGKAFTRKSGLHIHQ 32
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor,
adipogenesis, CLCNKA, chloride channel Ka, rhodopsin,
IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 48
Score = 66.9 bits (164), Expect = 2e-14
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Query: 50 HLRTHTGEQPYKCKY--CERSFSISSNLQRHVRNIHNKEKPFKC 91
+ TGE+P+ C + C FS S L RH R H+ KP
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRR-SHSGVKPSGP 45
Score = 66.9 bits (164), Expect = 2e-14
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Query: 781 HLRTHTGEQPYKCKY--CERSFSISSNLQRHVRNIHNKEKPFKC 822
+ TGE+P+ C + C FS S L RH R H+ KP
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRR-SHSGVKPSGP 45
Score = 56.2 bits (136), Expect = 2e-10
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 32 YACKY--CGKVFPRSANLTRHLRTHTGEQPYKC 62
+AC + CG F RS L+RH R+H+G +P
Sbjct: 13 FACTWPGCGWRFSRSDELSRHRRSHSGVKPSGP 45
Score = 56.2 bits (136), Expect = 2e-10
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 763 YACKY--CGKVFPRSANLTRHLRTHTGEQPYKC 793
+AC + CG F RS L+RH R+H+G +P
Sbjct: 13 FACTWPGCGWRFSRSDELSRHRRSHSGVKPSGP 45
Score = 48.1 bits (115), Expect = 1e-07
Identities = 14/45 (31%), Positives = 18/45 (40%), Gaps = 3/45 (6%)
Query: 243 HIRTHHVGARQHACQE--CGKTFATSSGLKQHTHIHSSVKPFRCE 285
+ G + AC CG F+ S L +H HS VKP
Sbjct: 3 SGSSG-TGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPS 46
Score = 40.0 bits (94), Expect = 8e-05
Identities = 12/36 (33%), Positives = 14/36 (38%), Gaps = 3/36 (8%)
Query: 78 HVRNIHNKEKPFKC--PLCDRCFGQQTNLDRHLKKH 111
EKPF C P C F + L RH + H
Sbjct: 3 SGS-SGTGEKPFACTWPGCGWRFSRSDELSRHRRSH 37
Score = 40.0 bits (94), Expect = 8e-05
Identities = 12/36 (33%), Positives = 14/36 (38%), Gaps = 3/36 (8%)
Query: 809 HVRNIHNKEKPFKC--PLCDRCFGQQTNLDRHLKKH 842
EKPF C P C F + L RH + H
Sbjct: 3 SGS-SGTGEKPFACTWPGCGWRFSRSDELSRHRRSH 37
Score = 37.7 bits (88), Expect = 5e-04
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Query: 272 HTHIHSSVKPFRC--EVCHKAYTQFSNLCRHKRMH 304
+ KPF C C +++ L RH+R H
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSH 37
Score = 37.7 bits (88), Expect = 6e-04
Identities = 11/37 (29%), Positives = 14/37 (37%), Gaps = 3/37 (8%)
Query: 223 RKFPC--ENCTKVFSDPSNLQRHIRTHHVGARQHACQ 257
+ F C C FS L RH R+ H G +
Sbjct: 11 KPFACTWPGCGWRFSRSDELSRHRRS-HSGVKPSGPS 46
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 66.8 bits (164), Expect = 2e-14
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 50 HLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 91
+ TGE+PYKC+ C + F +L H +H EKP
Sbjct: 3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHM-VHTGEKPSGP 43
Score = 66.8 bits (164), Expect = 2e-14
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 781 HLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 822
+ TGE+PYKC+ C + F +L H +H EKP
Sbjct: 3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHM-VHTGEKPSGP 43
Score = 57.9 bits (141), Expect = 4e-11
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQPYKC 62
Y C+ CGK F +L H HTGE+P
Sbjct: 13 YKCEECGKGFICRRDLYTHHMVHTGEKPSGP 43
Score = 57.9 bits (141), Expect = 4e-11
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQPYKC 793
Y C+ CGK F +L H HTGE+P
Sbjct: 13 YKCEECGKGFICRRDLYTHHMVHTGEKPSGP 43
Score = 46.8 bits (112), Expect = 3e-07
Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 243 HIRTHHVGARQHACQECGKTFATSSGLKQHTHIHSSVKPFRCE 285
+ G + + C+ECGK F L H +H+ KP
Sbjct: 3 SGSSG-TGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGPS 44
Score = 45.2 bits (108), Expect = 1e-06
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 272 HTHIHSSVKPFRCEVCHKAYTQFSNLCRHKRMH 304
+ KP++CE C K + +L H +H
Sbjct: 3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHMVH 35
Score = 36.4 bits (85), Expect = 0.002
Identities = 10/34 (29%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 78 HVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 111
EKP+KC C + F + +L H H
Sbjct: 3 SGS-SGTGEKPYKCEECGKGFICRRDLYTHHMVH 35
Score = 36.4 bits (85), Expect = 0.002
Identities = 10/34 (29%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 809 HVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 842
EKP+KC C + F + +L H H
Sbjct: 3 SGS-SGTGEKPYKCEECGKGFICRRDLYTHHMVH 35
Score = 31.7 bits (73), Expect = 0.068
Identities = 10/34 (29%), Positives = 12/34 (35%), Gaps = 3/34 (8%)
Query: 216 HQAQVH-GRK-FPCENCTKVFSDPSNLQRHIRTH 247
G K + CE C K F +L H H
Sbjct: 3 SG-SSGTGEKPYKCEECGKGFICRRDLYTHHMVH 35
Score = 28.7 bits (65), Expect = 0.87
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 198 YRCESCSQTFCWRPHLNFHQ 217
Y+CE C + F R L H
Sbjct: 13 YKCEECGKGFICRRDLYTHH 32
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 66.8 bits (164), Expect = 3e-14
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 50 HLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 91
+ TGE+PYKC+ C + ++ NL H + +H E+P
Sbjct: 3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQK-VHTGERPSGP 43
Score = 66.8 bits (164), Expect = 3e-14
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 781 HLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 822
+ TGE+PYKC+ C + ++ NL H + +H E+P
Sbjct: 3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQK-VHTGERPSGP 43
Score = 58.7 bits (143), Expect = 2e-11
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQPYKC 62
Y C+ CGK + NL H + HTGE+P
Sbjct: 13 YKCEKCGKGYNSKFNLDMHQKVHTGERPSGP 43
Score = 58.7 bits (143), Expect = 2e-11
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQPYKC 793
Y C+ CGK + NL H + HTGE+P
Sbjct: 13 YKCEKCGKGYNSKFNLDMHQKVHTGERPSGP 43
Score = 44.8 bits (107), Expect = 1e-06
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 272 HTHIHSSVKPFRCEVCHKAYTQFSNLCRHKRMH 304
+ KP++CE C K Y NL H+++H
Sbjct: 3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVH 35
Score = 44.8 bits (107), Expect = 1e-06
Identities = 9/42 (21%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 243 HIRTHHVGARQHACQECGKTFATSSGLKQHTHIHSSVKPFRC 284
+ G + + C++CGK + + L H +H+ +P
Sbjct: 3 SGSSG-TGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGP 43
Score = 39.4 bits (93), Expect = 1e-04
Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 78 HVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 111
EKP+KC C + + + NLD H K H
Sbjct: 3 SGS-SGTGEKPYKCEKCGKGYNSKFNLDMHQKVH 35
Score = 39.4 bits (93), Expect = 1e-04
Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 809 HVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 842
EKP+KC C + + + NLD H K H
Sbjct: 3 SGS-SGTGEKPYKCEKCGKGYNSKFNLDMHQKVH 35
Score = 32.5 bits (75), Expect = 0.036
Identities = 10/34 (29%), Positives = 14/34 (41%), Gaps = 3/34 (8%)
Query: 216 HQAQVH-GRK-FPCENCTKVFSDPSNLQRHIRTH 247
G K + CE C K ++ NL H + H
Sbjct: 3 SG-SSGTGEKPYKCEKCGKGYNSKFNLDMHQKVH 35
Score = 28.6 bits (65), Expect = 0.88
Identities = 7/20 (35%), Positives = 13/20 (65%)
Query: 198 YRCESCSQTFCWRPHLNFHQ 217
Y+CE C + + + +L+ HQ
Sbjct: 13 YKCEKCGKGYNSKFNLDMHQ 32
Score = 26.0 bits (58), Expect = 7.4
Identities = 6/20 (30%), Positives = 13/20 (65%)
Query: 312 KCVKCDQSFSTVTSLSKHKR 331
KC KC + +++ +L H++
Sbjct: 14 KCEKCGKGYNSKFNLDMHQK 33
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 66.8 bits (164), Expect = 3e-14
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 49 RHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 91
+ TGE+PY C C ++F +S++L +H+R +H +E
Sbjct: 2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLR-VHTQETLSGP 43
Score = 66.8 bits (164), Expect = 3e-14
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 780 RHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 822
+ TGE+PY C C ++F +S++L +H+R +H +E
Sbjct: 2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLR-VHTQETLSGP 43
Score = 59.1 bits (144), Expect = 1e-11
Identities = 15/32 (46%), Positives = 18/32 (56%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQPYKCK 63
Y+C CGK F SA+L +HLR HT E
Sbjct: 13 YSCNVCGKAFVLSAHLNQHLRVHTQETLSGPS 44
Score = 59.1 bits (144), Expect = 1e-11
Identities = 15/32 (46%), Positives = 18/32 (56%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQPYKCK 794
Y+C CGK F SA+L +HLR HT E
Sbjct: 13 YSCNVCGKAFVLSAHLNQHLRVHTQETLSGPS 44
Score = 46.7 bits (112), Expect = 3e-07
Identities = 11/44 (25%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Query: 242 RHIRTHHVGARQHACQECGKTFATSSGLKQHTHIHSSVKPFRCE 285
+ G + ++C CGK F S+ L QH +H+
Sbjct: 2 SSGSSG-TGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPS 44
Score = 46.7 bits (112), Expect = 3e-07
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 271 QHTHIHSSVKPFRCEVCHKAYTQFSNLCRHKRMH 304
+ KP+ C VC KA+ ++L +H R+H
Sbjct: 2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVH 35
Score = 37.1 bits (87), Expect = 7e-04
Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 77 RHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 111
EKP+ C +C + F +L++HL+ H
Sbjct: 2 SSGS-SGTGEKPYSCNVCGKAFVLSAHLNQHLRVH 35
Score = 37.1 bits (87), Expect = 7e-04
Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 808 RHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 842
EKP+ C +C + F +L++HL+ H
Sbjct: 2 SSGS-SGTGEKPYSCNVCGKAFVLSAHLNQHLRVH 35
Score = 30.2 bits (69), Expect = 0.26
Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 3/34 (8%)
Query: 216 HQAQVH-GRK-FPCENCTKVFSDPSNLQRHIRTH 247
G K + C C K F ++L +H+R H
Sbjct: 3 SG-SSGTGEKPYSCNVCGKAFVLSAHLNQHLRVH 35
Score = 27.9 bits (63), Expect = 1.6
Identities = 8/20 (40%), Positives = 9/20 (45%)
Query: 198 YRCESCSQTFCWRPHLNFHQ 217
Y C C + F HLN H
Sbjct: 13 YSCNVCGKAFVLSAHLNQHL 32
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 66.8 bits (164), Expect = 3e-14
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 50 HLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 91
+ TGE+ Y CK C +SFS + L +H R +H+ EKP
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHER-LHSGEKPSGP 43
Score = 66.8 bits (164), Expect = 3e-14
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 781 HLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 822
+ TGE+ Y CK C +SFS + L +H R +H+ EKP
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHER-LHSGEKPSGP 43
Score = 57.5 bits (140), Expect = 4e-11
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQPYKC 62
Y CK CGK F R+ L +H R H+GE+P
Sbjct: 13 YNCKECGKSFSRAPCLLKHERLHSGEKPSGP 43
Score = 57.5 bits (140), Expect = 4e-11
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQPYKC 793
Y CK CGK F R+ L +H R H+GE+P
Sbjct: 13 YNCKECGKSFSRAPCLLKHERLHSGEKPSGP 43
Score = 48.3 bits (116), Expect = 1e-07
Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 243 HIRTHHVGARQHACQECGKTFATSSGLKQHTHIHSSVKPFRC 284
+ G + + C+ECGK+F+ + L +H +HS KP
Sbjct: 3 SGSSG-TGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGP 43
Score = 41.7 bits (99), Expect = 2e-05
Identities = 8/33 (24%), Positives = 18/33 (54%)
Query: 272 HTHIHSSVKPFRCEVCHKAYTQFSNLCRHKRMH 304
+ K + C+ C K++++ L +H+R+H
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHERLH 35
Score = 34.8 bits (81), Expect = 0.006
Identities = 8/34 (23%), Positives = 13/34 (38%), Gaps = 1/34 (2%)
Query: 78 HVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 111
EK + C C + F + L +H + H
Sbjct: 3 SGS-SGTGEKLYNCKECGKSFSRAPCLLKHERLH 35
Score = 34.8 bits (81), Expect = 0.006
Identities = 8/34 (23%), Positives = 13/34 (38%), Gaps = 1/34 (2%)
Query: 809 HVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 842
EK + C C + F + L +H + H
Sbjct: 3 SGS-SGTGEKLYNCKECGKSFSRAPCLLKHERLH 35
Score = 31.0 bits (71), Expect = 0.12
Identities = 11/34 (32%), Positives = 14/34 (41%), Gaps = 3/34 (8%)
Query: 216 HQAQVH-GRK-FPCENCTKVFSDPSNLQRHIRTH 247
G K + C+ C K FS L +H R H
Sbjct: 3 SG-SSGTGEKLYNCKECGKSFSRAPCLLKHERLH 35
Score = 26.0 bits (58), Expect = 7.8
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 198 YRCESCSQTFCWRPHLNFHQ 217
Y C+ C ++F P L H+
Sbjct: 13 YNCKECGKSFSRAPCLLKHE 32
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 66.8 bits (164), Expect = 3e-14
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 49 RHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 91
+ GE+PY C C ++FS S L H+R H+ EKP
Sbjct: 2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIHMR-THSGEKPSGP 43
Score = 66.8 bits (164), Expect = 3e-14
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 780 RHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 822
+ GE+PY C C ++FS S L H+R H+ EKP
Sbjct: 2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIHMR-THSGEKPSGP 43
Score = 57.6 bits (140), Expect = 5e-11
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQPYKC 62
Y C CGK F + L H+RTH+GE+P
Sbjct: 13 YGCSECGKAFSSKSYLIIHMRTHSGEKPSGP 43
Score = 57.6 bits (140), Expect = 5e-11
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQPYKC 793
Y C CGK F + L H+RTH+GE+P
Sbjct: 13 YGCSECGKAFSSKSYLIIHMRTHSGEKPSGP 43
Score = 49.1 bits (118), Expect = 5e-08
Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Query: 242 RHIRTHHVGARQHACQECGKTFATSSGLKQHTHIHSSVKPFRCE 285
+ G + + C ECGK F++ S L H HS KP
Sbjct: 2 SSGSSG-AGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPS 44
Score = 41.4 bits (98), Expect = 2e-05
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 271 QHTHIHSSVKPFRCEVCHKAYTQFSNLCRHKRMH 304
+ KP+ C C KA++ S L H R H
Sbjct: 2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTH 35
Score = 37.5 bits (88), Expect = 7e-04
Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 77 RHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 111
EKP+ C C + F ++ L H++ H
Sbjct: 2 SSGS-SGAGEKPYGCSECGKAFSSKSYLIIHMRTH 35
Score = 37.5 bits (88), Expect = 7e-04
Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 808 RHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 842
EKP+ C C + F ++ L H++ H
Sbjct: 2 SSGS-SGAGEKPYGCSECGKAFSSKSYLIIHMRTH 35
Score = 32.1 bits (74), Expect = 0.045
Identities = 13/34 (38%), Positives = 15/34 (44%), Gaps = 3/34 (8%)
Query: 216 HQAQVH-GRK-FPCENCTKVFSDPSNLQRHIRTH 247
G K + C C K FS S L H+RTH
Sbjct: 3 SG-SSGAGEKPYGCSECGKAFSSKSYLIIHMRTH 35
Score = 26.4 bits (59), Expect = 5.1
Identities = 6/20 (30%), Positives = 9/20 (45%)
Query: 198 YRCESCSQTFCWRPHLNFHQ 217
Y C C + F + +L H
Sbjct: 13 YGCSECGKAFSSKSYLIIHM 32
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 66.8 bits (164), Expect = 3e-14
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 49 RHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 91
+ TGE+PYKC C ++F S+L H H+ EKP
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRARSSLAIHQA-THSGEKPSGP 43
Score = 66.8 bits (164), Expect = 3e-14
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 780 RHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 822
+ TGE+PYKC C ++F S+L H H+ EKP
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRARSSLAIHQA-THSGEKPSGP 43
Score = 56.4 bits (137), Expect = 1e-10
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQPYKC 62
Y C CGK F ++L H TH+GE+P
Sbjct: 13 YKCNECGKAFRARSSLAIHQATHSGEKPSGP 43
Score = 56.4 bits (137), Expect = 1e-10
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQPYKC 793
Y C CGK F ++L H TH+GE+P
Sbjct: 13 YKCNECGKAFRARSSLAIHQATHSGEKPSGP 43
Score = 47.9 bits (115), Expect = 1e-07
Identities = 14/43 (32%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 242 RHIRTHHVGARQHACQECGKTFATSSGLKQHTHIHSSVKPFRC 284
+ G + + C ECGK F S L H HS KP
Sbjct: 2 SSGSSG-TGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGP 43
Score = 42.1 bits (100), Expect = 2e-05
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 271 QHTHIHSSVKPFRCEVCHKAYTQFSNLCRHKRMH 304
+ KP++C C KA+ S+L H+ H
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRARSSLAIHQATH 35
Score = 36.7 bits (86), Expect = 0.001
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 77 RHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 111
EKP+KC C + F +++L H H
Sbjct: 2 SSGS-SGTGEKPYKCNECGKAFRARSSLAIHQATH 35
Score = 36.7 bits (86), Expect = 0.001
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 808 RHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 842
EKP+KC C + F +++L H H
Sbjct: 2 SSGS-SGTGEKPYKCNECGKAFRARSSLAIHQATH 35
Score = 31.0 bits (71), Expect = 0.14
Identities = 11/34 (32%), Positives = 13/34 (38%), Gaps = 3/34 (8%)
Query: 216 HQAQVH-GRK-FPCENCTKVFSDPSNLQRHIRTH 247
G K + C C K F S+L H TH
Sbjct: 3 SG-SSGTGEKPYKCNECGKAFRARSSLAIHQATH 35
Score = 26.3 bits (59), Expect = 6.0
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 198 YRCESCSQTFCWRPHLNFHQ 217
Y+C C + F R L HQ
Sbjct: 13 YKCNECGKAFRARSSLAIHQ 32
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 66.8 bits (164), Expect = 3e-14
Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 50 HLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 91
+ TGE+PYKC C ++F SNL H IH EKP
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQV-IHTGEKPSGP 43
Score = 66.8 bits (164), Expect = 3e-14
Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 781 HLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 822
+ TGE+PYKC C ++F SNL H IH EKP
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQV-IHTGEKPSGP 43
Score = 57.9 bits (141), Expect = 3e-11
Identities = 15/31 (48%), Positives = 17/31 (54%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQPYKC 62
Y C CGK F +NLT H HTGE+P
Sbjct: 13 YKCNECGKAFRAHSNLTTHQVIHTGEKPSGP 43
Score = 57.9 bits (141), Expect = 3e-11
Identities = 15/31 (48%), Positives = 17/31 (54%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQPYKC 793
Y C CGK F +NLT H HTGE+P
Sbjct: 13 YKCNECGKAFRAHSNLTTHQVIHTGEKPSGP 43
Score = 46.7 bits (112), Expect = 3e-07
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 271 QHTHIHSSVKPFRCEVCHKAYTQFSNLCRHKRMH 304
+ KP++C C KA+ SNL H+ +H
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIH 35
Score = 46.4 bits (111), Expect = 5e-07
Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 243 HIRTHHVGARQHACQECGKTFATSSGLKQHTHIHSSVKPFRCE 285
+ G + + C ECGK F S L H IH+ KP
Sbjct: 3 SGSSG-TGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPS 44
Score = 37.5 bits (88), Expect = 6e-04
Identities = 11/34 (32%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 78 HVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 111
EKP+KC C + F +NL H H
Sbjct: 3 SGS-SGTGEKPYKCNECGKAFRAHSNLTTHQVIH 35
Score = 37.5 bits (88), Expect = 6e-04
Identities = 11/34 (32%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 809 HVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 842
EKP+KC C + F +NL H H
Sbjct: 3 SGS-SGTGEKPYKCNECGKAFRAHSNLTTHQVIH 35
Score = 30.9 bits (71), Expect = 0.12
Identities = 9/21 (42%), Positives = 9/21 (42%)
Query: 227 CENCTKVFSDPSNLQRHIRTH 247
C C K F SNL H H
Sbjct: 15 CNECGKAFRAHSNLTTHQVIH 35
Score = 27.5 bits (62), Expect = 2.4
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 198 YRCESCSQTFCWRPHLNFHQ 217
Y+C C + F +L HQ
Sbjct: 13 YKCNECGKAFRAHSNLTTHQ 32
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 68.1 bits (166), Expect = 3e-14
Identities = 17/68 (25%), Positives = 25/68 (36%), Gaps = 8/68 (11%)
Query: 225 FPCENCTKVFSDPSNLQRHIRTHHVGARQHA--------CQECGKTFATSSGLKQHTHIH 276
P ++C + FS L H+ HVG + C GK+F L H +H
Sbjct: 26 RPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVH 85
Query: 277 SSVKPFRC 284
+ K
Sbjct: 86 TGEKSGPS 93
Score = 64.6 bits (157), Expect = 6e-13
Identities = 16/74 (21%), Positives = 22/74 (29%), Gaps = 10/74 (13%)
Query: 27 TTKDRYACKYCGKVFPRSANLTRHL-RTHTGEQPYKCKYCE--------RSFSISSNLQR 77
+ K C + F L H+ H G C +SF L
Sbjct: 21 EAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVN 80
Query: 78 HVRNIHNKEKPFKC 91
H+R +H EK
Sbjct: 81 HIR-VHTGEKSGPS 93
Score = 64.6 bits (157), Expect = 6e-13
Identities = 16/74 (21%), Positives = 22/74 (29%), Gaps = 10/74 (13%)
Query: 758 TTKDRYACKYCGKVFPRSANLTRHL-RTHTGEQPYKCKYCE--------RSFSISSNLQR 808
+ K C + F L H+ H G C +SF L
Sbjct: 21 EAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVN 80
Query: 809 HVRNIHNKEKPFKC 822
H+R +H EK
Sbjct: 81 HIR-VHTGEKSGPS 93
Score = 54.6 bits (131), Expect = 2e-09
Identities = 15/67 (22%), Positives = 22/67 (32%), Gaps = 8/67 (11%)
Query: 53 THTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFK--------CPLCDRCFGQQTNL 104
+ K C+R+FS L HV H CP + F + L
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKL 78
Query: 105 DRHLKKH 111
H++ H
Sbjct: 79 VNHIRVH 85
Score = 54.6 bits (131), Expect = 2e-09
Identities = 15/67 (22%), Positives = 22/67 (32%), Gaps = 8/67 (11%)
Query: 784 THTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFK--------CPLCDRCFGQQTNL 835
+ K C+R+FS L HV H CP + F + L
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKL 78
Query: 836 DRHLKKH 842
H++ H
Sbjct: 79 VNHIRVH 85
Score = 46.1 bits (109), Expect = 2e-06
Identities = 15/66 (22%), Positives = 22/66 (33%), Gaps = 9/66 (13%)
Query: 248 HVGARQHACQECGKTFATSSGLKQH-THIHSSVKPFRCEVCH--------KAYTQFSNLC 298
+ C +TF+T L H T H VC+ K++ L
Sbjct: 20 DEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLV 79
Query: 299 RHKRMH 304
H R+H
Sbjct: 80 NHIRVH 85
Score = 35.3 bits (81), Expect = 0.011
Identities = 15/83 (18%), Positives = 26/83 (31%), Gaps = 11/83 (13%)
Query: 260 GKTFATSSGLKQHTH---IHSSVKPFRCEVCHKAYTQFSNLCRH-KRMHANCRMQIK--- 312
G + ++ +KQ I + + C + ++ L H H Q
Sbjct: 1 GSSGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVC 60
Query: 313 ----CVKCDQSFSTVTSLSKHKR 331
C + +SF L H R
Sbjct: 61 YWEECPREGKSFKAKYKLVNHIR 83
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 66.4 bits (163), Expect = 3e-14
Identities = 13/43 (30%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 49 RHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 91
+ TG +PY C C ++F S L H R H E
Sbjct: 2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTR-THTGESGPSS 43
Score = 66.4 bits (163), Expect = 3e-14
Identities = 13/43 (30%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 780 RHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 822
+ TG +PY C C ++F S L H R H E
Sbjct: 2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTR-THTGESGPSS 43
Score = 57.1 bits (139), Expect = 6e-11
Identities = 14/31 (45%), Positives = 15/31 (48%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQPYKC 62
Y C CGK F + L H RTHTGE
Sbjct: 13 YVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 57.1 bits (139), Expect = 6e-11
Identities = 14/31 (45%), Positives = 15/31 (48%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQPYKC 793
Y C CGK F + L H RTHTGE
Sbjct: 13 YVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 47.9 bits (115), Expect = 1e-07
Identities = 12/43 (27%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 242 RHIRTHHVGARQHACQECGKTFATSSGLKQHTHIHSSVKPFRC 284
+ G + + C ECGK F + S L HT H+
Sbjct: 2 SSGSSG-TGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 40.9 bits (97), Expect = 3e-05
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 272 HTHIHSSVKPFRCEVCHKAYTQFSNLCRHKRMH 304
+ +KP+ C C KA+ S L H R H
Sbjct: 3 SGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTH 35
Score = 34.4 bits (80), Expect = 0.007
Identities = 8/35 (22%), Positives = 13/35 (37%), Gaps = 1/35 (2%)
Query: 77 RHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 111
KP+ C C + F ++ L H + H
Sbjct: 2 SSGS-SGTGMKPYVCNECGKAFRSKSYLIIHTRTH 35
Score = 34.4 bits (80), Expect = 0.007
Identities = 8/35 (22%), Positives = 13/35 (37%), Gaps = 1/35 (2%)
Query: 808 RHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 842
KP+ C C + F ++ L H + H
Sbjct: 2 SSGS-SGTGMKPYVCNECGKAFRSKSYLIIHTRTH 35
Score = 31.3 bits (72), Expect = 0.083
Identities = 10/21 (47%), Positives = 10/21 (47%)
Query: 227 CENCTKVFSDPSNLQRHIRTH 247
C C K F S L H RTH
Sbjct: 15 CNECGKAFRSKSYLIIHTRTH 35
Score = 25.9 bits (58), Expect = 7.5
Identities = 6/20 (30%), Positives = 9/20 (45%)
Query: 198 YRCESCSQTFCWRPHLNFHQ 217
Y C C + F + +L H
Sbjct: 13 YVCNECGKAFRSKSYLIIHT 32
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2ysv_A
Length = 46
Score = 66.4 bits (163), Expect = 3e-14
Identities = 17/43 (39%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 49 RHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 91
+ TGE+PY+CK C ++FS +++L +H R +H EKP
Sbjct: 2 SSGSSGTGEKPYECKECGKAFSQTTHLIQHQR-VHTGEKPSGP 43
Score = 66.4 bits (163), Expect = 3e-14
Identities = 17/43 (39%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 780 RHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 822
+ TGE+PY+CK C ++FS +++L +H R +H EKP
Sbjct: 2 SSGSSGTGEKPYECKECGKAFSQTTHLIQHQR-VHTGEKPSGP 43
Score = 57.9 bits (141), Expect = 4e-11
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQPYKC 62
Y CK CGK F ++ +L +H R HTGE+P
Sbjct: 13 YECKECGKAFSQTTHLIQHQRVHTGEKPSGP 43
Score = 57.9 bits (141), Expect = 4e-11
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQPYKC 793
Y CK CGK F ++ +L +H R HTGE+P
Sbjct: 13 YECKECGKAFSQTTHLIQHQRVHTGEKPSGP 43
Score = 47.9 bits (115), Expect = 1e-07
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 242 RHIRTHHVGARQHACQECGKTFATSSGLKQHTHIHSSVKPFRC 284
+ G + + C+ECGK F+ ++ L QH +H+ KP
Sbjct: 2 SSGSSGT-GEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGP 43
Score = 44.0 bits (105), Expect = 3e-06
Identities = 11/34 (32%), Positives = 21/34 (61%)
Query: 271 QHTHIHSSVKPFRCEVCHKAYTQFSNLCRHKRMH 304
+ KP+ C+ C KA++Q ++L +H+R+H
Sbjct: 2 SSGSSGTGEKPYECKECGKAFSQTTHLIQHQRVH 35
Score = 37.5 bits (88), Expect = 6e-04
Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 77 RHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 111
EKP++C C + F Q T+L +H + H
Sbjct: 2 SSGS-SGTGEKPYECKECGKAFSQTTHLIQHQRVH 35
Score = 37.5 bits (88), Expect = 6e-04
Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 808 RHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 842
EKP++C C + F Q T+L +H + H
Sbjct: 2 SSGS-SGTGEKPYECKECGKAFSQTTHLIQHQRVH 35
Score = 30.2 bits (69), Expect = 0.21
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 3/34 (8%)
Query: 216 HQAQVH-GRK-FPCENCTKVFSDPSNLQRHIRTH 247
G K + C+ C K FS ++L +H R H
Sbjct: 3 SG-SSGTGEKPYECKECGKAFSQTTHLIQHQRVH 35
Score = 26.7 bits (60), Expect = 3.7
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 198 YRCESCSQTFCWRPHLNFHQ 217
Y C+ C + F HL HQ
Sbjct: 13 YECKECGKAFSQTTHLIQHQ 32
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 66.4 bits (163), Expect = 4e-14
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 50 HLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 91
+ TG +PY+C C ++FS +S L RH R +H EKP
Sbjct: 3 SGSSGTGGKPYQCNECGKAFSQTSKLARHQR-VHTGEKPSGP 43
Score = 66.4 bits (163), Expect = 4e-14
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 781 HLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 822
+ TG +PY+C C ++FS +S L RH R +H EKP
Sbjct: 3 SGSSGTGGKPYQCNECGKAFSQTSKLARHQR-VHTGEKPSGP 43
Score = 58.3 bits (142), Expect = 2e-11
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQPYKC 62
Y C CGK F +++ L RH R HTGE+P
Sbjct: 13 YQCNECGKAFSQTSKLARHQRVHTGEKPSGP 43
Score = 58.3 bits (142), Expect = 2e-11
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQPYKC 793
Y C CGK F +++ L RH R HTGE+P
Sbjct: 13 YQCNECGKAFSQTSKLARHQRVHTGEKPSGP 43
Score = 47.1 bits (113), Expect = 2e-07
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 243 HIRTHHVGARQHACQECGKTFATSSGLKQHTHIHSSVKPFRCE 285
+ G + + C ECGK F+ +S L +H +H+ KP
Sbjct: 3 SGSSG-TGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGPS 44
Score = 43.3 bits (103), Expect = 4e-06
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 272 HTHIHSSVKPFRCEVCHKAYTQFSNLCRHKRMH 304
+ KP++C C KA++Q S L RH+R+H
Sbjct: 3 SGSSGTGGKPYQCNECGKAFSQTSKLARHQRVH 35
Score = 36.0 bits (84), Expect = 0.002
Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 78 HVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 111
KP++C C + F Q + L RH + H
Sbjct: 3 SGS-SGTGGKPYQCNECGKAFSQTSKLARHQRVH 35
Score = 36.0 bits (84), Expect = 0.002
Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 809 HVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 842
KP++C C + F Q + L RH + H
Sbjct: 3 SGS-SGTGGKPYQCNECGKAFSQTSKLARHQRVH 35
Score = 31.0 bits (71), Expect = 0.11
Identities = 13/34 (38%), Positives = 14/34 (41%), Gaps = 3/34 (8%)
Query: 216 HQAQVH-GRK-FPCENCTKVFSDPSNLQRHIRTH 247
G K + C C K FS S L RH R H
Sbjct: 3 SG-SSGTGGKPYQCNECGKAFSQTSKLARHQRVH 35
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 66.4 bits (163), Expect = 4e-14
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 50 HLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 91
+ + E+PYKC+ C + ++ NL H R +H EK
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQR-VHMGEKTSGP 43
Score = 66.4 bits (163), Expect = 4e-14
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 781 HLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 822
+ + E+PYKC+ C + ++ NL H R +H EK
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQR-VHMGEKTSGP 43
Score = 58.3 bits (142), Expect = 3e-11
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQPYKC 62
Y C+ CGK + R NL H R H GE+
Sbjct: 13 YKCEDCGKGYNRRLNLDMHQRVHMGEKTSGP 43
Score = 58.3 bits (142), Expect = 3e-11
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQPYKC 793
Y C+ CGK + R NL H R H GE+
Sbjct: 13 YKCEDCGKGYNRRLNLDMHQRVHMGEKTSGP 43
Score = 46.7 bits (112), Expect = 3e-07
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 271 QHTHIHSSVKPFRCEVCHKAYTQFSNLCRHKRMH 304
S KP++CE C K Y + NL H+R+H
Sbjct: 2 SSGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVH 35
Score = 44.8 bits (107), Expect = 2e-06
Identities = 8/42 (19%), Positives = 15/42 (35%), Gaps = 1/42 (2%)
Query: 243 HIRTHHVGARQHACQECGKTFATSSGLKQHTHIHSSVKPFRC 284
+ + + C++CGK + L H +H K
Sbjct: 3 SGSSG-SVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGP 43
Score = 38.6 bits (91), Expect = 3e-04
Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 78 HVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 111
+ EKP+KC C + + ++ NLD H + H
Sbjct: 3 SGS-SGSVEKPYKCEDCGKGYNRRLNLDMHQRVH 35
Score = 38.6 bits (91), Expect = 3e-04
Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 809 HVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 842
+ EKP+KC C + + ++ NLD H + H
Sbjct: 3 SGS-SGSVEKPYKCEDCGKGYNRRLNLDMHQRVH 35
Score = 32.5 bits (75), Expect = 0.042
Identities = 10/34 (29%), Positives = 14/34 (41%), Gaps = 3/34 (8%)
Query: 216 HQAQVH-GRK-FPCENCTKVFSDPSNLQRHIRTH 247
K + CE+C K ++ NL H R H
Sbjct: 3 SG-SSGSVEKPYKCEDCGKGYNRRLNLDMHQRVH 35
Score = 28.6 bits (65), Expect = 0.80
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 198 YRCESCSQTFCWRPHLNFHQ 217
Y+CE C + + R +L+ HQ
Sbjct: 13 YKCEDCGKGYNRRLNLDMHQ 32
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 66.4 bits (163), Expect = 4e-14
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 49 RHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 91
+ TGE+PY+C C ++FS +L H R IH+ +KP
Sbjct: 2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQR-IHSGKKPSGP 43
Score = 66.4 bits (163), Expect = 4e-14
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 780 RHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 822
+ TGE+PY+C C ++FS +L H R IH+ +KP
Sbjct: 2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQR-IHSGKKPSGP 43
Score = 56.8 bits (138), Expect = 9e-11
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQPYKC 62
Y C CGK F +L+ H R H+G++P
Sbjct: 13 YECSVCGKAFSHRQSLSVHQRIHSGKKPSGP 43
Score = 56.8 bits (138), Expect = 9e-11
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQPYKC 793
Y C CGK F +L+ H R H+G++P
Sbjct: 13 YECSVCGKAFSHRQSLSVHQRIHSGKKPSGP 43
Score = 45.6 bits (109), Expect = 7e-07
Identities = 13/44 (29%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
Query: 242 RHIRTHHVGARQHACQECGKTFATSSGLKQHTHIHSSVKPFRCE 285
+ G + + C CGK F+ L H IHS KP
Sbjct: 2 SSGSSG-TGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPS 44
Score = 43.7 bits (104), Expect = 4e-06
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 271 QHTHIHSSVKPFRCEVCHKAYTQFSNLCRHKRMH 304
+ KP+ C VC KA++ +L H+R+H
Sbjct: 2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIH 35
Score = 34.8 bits (81), Expect = 0.005
Identities = 9/35 (25%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 77 RHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 111
EKP++C +C + F + +L H + H
Sbjct: 2 SSGS-SGTGEKPYECSVCGKAFSHRQSLSVHQRIH 35
Score = 34.8 bits (81), Expect = 0.005
Identities = 9/35 (25%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 808 RHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 842
EKP++C +C + F + +L H + H
Sbjct: 2 SSGS-SGTGEKPYECSVCGKAFSHRQSLSVHQRIH 35
Score = 30.6 bits (70), Expect = 0.16
Identities = 11/34 (32%), Positives = 13/34 (38%), Gaps = 3/34 (8%)
Query: 216 HQAQVH-GRK-FPCENCTKVFSDPSNLQRHIRTH 247
G K + C C K FS +L H R H
Sbjct: 3 SG-SSGTGEKPYECSVCGKAFSHRQSLSVHQRIH 35
Score = 26.3 bits (59), Expect = 6.3
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 198 YRCESCSQTFCWRPHLNFHQ 217
Y C C + F R L+ HQ
Sbjct: 13 YECSVCGKAFSHRQSLSVHQ 32
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 66.0 bits (162), Expect = 5e-14
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 49 RHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 91
+ TGE+PY+CK C ++F+ ++L +H + H EKP
Sbjct: 2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQHQK-THTGEKPSGP 43
Score = 66.0 bits (162), Expect = 5e-14
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 780 RHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 822
+ TGE+PY+CK C ++F+ ++L +H + H EKP
Sbjct: 2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQHQK-THTGEKPSGP 43
Score = 58.7 bits (143), Expect = 2e-11
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQPYKCK 63
Y CK C K F + A+L +H +THTGE+P
Sbjct: 13 YECKVCSKAFTQKAHLAQHQKTHTGEKPSGPS 44
Score = 58.7 bits (143), Expect = 2e-11
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQPYKCK 794
Y CK C K F + A+L +H +THTGE+P
Sbjct: 13 YECKVCSKAFTQKAHLAQHQKTHTGEKPSGPS 44
Score = 49.1 bits (118), Expect = 5e-08
Identities = 11/44 (25%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
Query: 242 RHIRTHHVGARQHACQECGKTFATSSGLKQHTHIHSSVKPFRCE 285
+ G + + C+ C K F + L QH H+ KP
Sbjct: 2 SSGSSG-TGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPS 44
Score = 43.7 bits (104), Expect = 4e-06
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 271 QHTHIHSSVKPFRCEVCHKAYTQFSNLCRHKRMH 304
+ KP+ C+VC KA+TQ ++L +H++ H
Sbjct: 2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTH 35
Score = 38.3 bits (90), Expect = 3e-04
Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 77 RHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 111
EKP++C +C + F Q+ +L +H K H
Sbjct: 2 SSGS-SGTGEKPYECKVCSKAFTQKAHLAQHQKTH 35
Score = 38.3 bits (90), Expect = 3e-04
Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 808 RHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 842
EKP++C +C + F Q+ +L +H K H
Sbjct: 2 SSGS-SGTGEKPYECKVCSKAFTQKAHLAQHQKTH 35
Score = 31.3 bits (72), Expect = 0.10
Identities = 11/45 (24%), Positives = 20/45 (44%), Gaps = 4/45 (8%)
Query: 216 HQAQVH-GRK-FPCENCTKVFSDPSNLQRHIRTHHVGARQHACQE 258
G K + C+ C+K F+ ++L +H +T H G +
Sbjct: 3 SG-SSGTGEKPYECKVCSKAFTQKAHLAQHQKT-HTGEKPSGPSS 45
Score = 28.7 bits (65), Expect = 0.90
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 198 YRCESCSQTFCWRPHLNFHQ 217
Y C+ CS+ F + HL HQ
Sbjct: 13 YECKVCSKAFTQKAHLAQHQ 32
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Length = 46
Score = 66.0 bits (162), Expect = 5e-14
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 49 RHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 91
+ TG +PY C C ++FS+ S L H R H KP
Sbjct: 2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQR-SHTGVKPSGP 43
Score = 66.0 bits (162), Expect = 5e-14
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 780 RHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 822
+ TG +PY C C ++FS+ S L H R H KP
Sbjct: 2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQR-SHTGVKPSGP 43
Score = 56.8 bits (138), Expect = 8e-11
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQPYKC 62
Y C C K F + L H R+HTG +P
Sbjct: 13 YGCSQCAKTFSLKSQLIVHQRSHTGVKPSGP 43
Score = 56.8 bits (138), Expect = 8e-11
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQPYKC 793
Y C C K F + L H R+HTG +P
Sbjct: 13 YGCSQCAKTFSLKSQLIVHQRSHTGVKPSGP 43
Score = 48.3 bits (116), Expect = 9e-08
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 242 RHIRTHHVGARQHACQECGKTFATSSGLKQHTHIHSSVKPFRC 284
+ G + + C +C KTF+ S L H H+ VKP
Sbjct: 2 SSGSSG-TGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGP 43
Score = 41.4 bits (98), Expect = 2e-05
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 272 HTHIHSSVKPFRCEVCHKAYTQFSNLCRHKRMH 304
+ VKP+ C C K ++ S L H+R H
Sbjct: 3 SGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSH 35
Score = 36.0 bits (84), Expect = 0.002
Identities = 8/35 (22%), Positives = 13/35 (37%), Gaps = 1/35 (2%)
Query: 77 RHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 111
KP+ C C + F ++ L H + H
Sbjct: 2 SSGS-SGTGVKPYGCSQCAKTFSLKSQLIVHQRSH 35
Score = 36.0 bits (84), Expect = 0.002
Identities = 8/35 (22%), Positives = 13/35 (37%), Gaps = 1/35 (2%)
Query: 808 RHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 842
KP+ C C + F ++ L H + H
Sbjct: 2 SSGS-SGTGVKPYGCSQCAKTFSLKSQLIVHQRSH 35
Score = 31.7 bits (73), Expect = 0.069
Identities = 12/34 (35%), Positives = 14/34 (41%), Gaps = 3/34 (8%)
Query: 216 HQAQVH-GRK-FPCENCTKVFSDPSNLQRHIRTH 247
G K + C C K FS S L H R+H
Sbjct: 3 SG-SSGTGVKPYGCSQCAKTFSLKSQLIVHQRSH 35
Score = 27.1 bits (61), Expect = 3.2
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 198 YRCESCSQTFCWRPHLNFHQ 217
Y C C++TF + L HQ
Sbjct: 13 YGCSQCAKTFSLKSQLIVHQ 32
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens}
Length = 46
Score = 66.0 bits (162), Expect = 6e-14
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 50 HLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 91
+ GE+ +KC+ C+ FS +S+L+ H +H EKP
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQN-VHVGEKPSGP 43
Score = 66.0 bits (162), Expect = 6e-14
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 781 HLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 822
+ GE+ +KC+ C+ FS +S+L+ H +H EKP
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQN-VHVGEKPSGP 43
Score = 54.9 bits (133), Expect = 4e-10
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQPYKC 62
+ C+ C F ++++L H H GE+P
Sbjct: 13 WKCRECDMCFSQASSLRLHQNVHVGEKPSGP 43
Score = 54.9 bits (133), Expect = 4e-10
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQPYKC 793
+ C+ C F ++++L H H GE+P
Sbjct: 13 WKCRECDMCFSQASSLRLHQNVHVGEKPSGP 43
Score = 42.9 bits (102), Expect = 6e-06
Identities = 11/42 (26%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 243 HIRTHHVGARQHACQECGKTFATSSGLKQHTHIHSSVKPFRC 284
+ +G + C+EC F+ +S L+ H ++H KP
Sbjct: 3 SGSSG-MGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGP 43
Score = 42.5 bits (101), Expect = 1e-05
Identities = 8/33 (24%), Positives = 15/33 (45%)
Query: 272 HTHIHSSVKPFRCEVCHKAYTQFSNLCRHKRMH 304
K ++C C ++Q S+L H+ +H
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVH 35
Score = 39.1 bits (92), Expect = 1e-04
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 82 IHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 111
EK +KC CD CF Q ++L H H
Sbjct: 6 SGMGEKTWKCRECDMCFSQASSLRLHQNVH 35
Score = 39.1 bits (92), Expect = 1e-04
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 813 IHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 842
EK +KC CD CF Q ++L H H
Sbjct: 6 SGMGEKTWKCRECDMCFSQASSLRLHQNVH 35
Score = 31.4 bits (72), Expect = 0.100
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 227 CENCTKVFSDPSNLQRHIRTH 247
C C FS S+L+ H H
Sbjct: 15 CRECDMCFSQASSLRLHQNVH 35
Score = 27.1 bits (61), Expect = 2.8
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 312 KCVKCDQSFSTVTSLSKHKR 331
KC +CD FS +SL H+
Sbjct: 14 KCRECDMCFSQASSLRLHQN 33
Score = 26.4 bits (59), Expect = 5.6
Identities = 6/20 (30%), Positives = 8/20 (40%)
Query: 198 YRCESCSQTFCWRPHLNFHQ 217
++C C F L HQ
Sbjct: 13 WKCRECDMCFSQASSLRLHQ 32
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 66.0 bits (162), Expect = 6e-14
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 49 RHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 91
+ TGE+PY+C C +SF+ S L H + IH EKP
Sbjct: 2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQ-IHTGEKPSGP 43
Score = 66.0 bits (162), Expect = 6e-14
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 780 RHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 822
+ TGE+PY+C C +SF+ S L H + IH EKP
Sbjct: 2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQ-IHTGEKPSGP 43
Score = 56.4 bits (137), Expect = 1e-10
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQPYKCK 63
Y C CGK F + + L H + HTGE+P
Sbjct: 13 YECSICGKSFTKKSQLHVHQQIHTGEKPSGPS 44
Score = 56.4 bits (137), Expect = 1e-10
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQPYKCK 794
Y C CGK F + + L H + HTGE+P
Sbjct: 13 YECSICGKSFTKKSQLHVHQQIHTGEKPSGPS 44
Score = 46.0 bits (110), Expect = 5e-07
Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 242 RHIRTHHVGARQHACQECGKTFATSSGLKQHTHIHSSVKPFRC 284
+ G + + C CGK+F S L H IH+ KP
Sbjct: 2 SSGSSG-TGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGP 43
Score = 43.3 bits (103), Expect = 5e-06
Identities = 10/34 (29%), Positives = 19/34 (55%)
Query: 271 QHTHIHSSVKPFRCEVCHKAYTQFSNLCRHKRMH 304
+ KP+ C +C K++T+ S L H+++H
Sbjct: 2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIH 35
Score = 36.4 bits (85), Expect = 0.001
Identities = 9/35 (25%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 77 RHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 111
EKP++C +C + F +++ L H + H
Sbjct: 2 SSGS-SGTGEKPYECSICGKSFTKKSQLHVHQQIH 35
Score = 36.4 bits (85), Expect = 0.001
Identities = 9/35 (25%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 808 RHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 842
EKP++C +C + F +++ L H + H
Sbjct: 2 SSGS-SGTGEKPYECSICGKSFTKKSQLHVHQQIH 35
Score = 29.4 bits (67), Expect = 0.41
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 227 CENCTKVFSDPSNLQRHIRTH 247
C C K F+ S L H + H
Sbjct: 15 CSICGKSFTKKSQLHVHQQIH 35
Score = 27.1 bits (61), Expect = 3.4
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 198 YRCESCSQTFCWRPHLNFHQ 217
Y C C ++F + L+ HQ
Sbjct: 13 YECSICGKSFTKKSQLHVHQ 32
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 65.6 bits (161), Expect = 6e-14
Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 50 HLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 91
+ +GE+PY C C ++F S+L H++ H +EK
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLK-RHFREKSSGP 43
Score = 65.6 bits (161), Expect = 6e-14
Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 781 HLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 822
+ +GE+PY C C ++F S+L H++ H +EK
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLK-RHFREKSSGP 43
Score = 60.2 bits (147), Expect = 5e-12
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQPYKC 62
Y C CGK F R ++L HL+ H E+
Sbjct: 13 YGCNECGKNFGRHSHLIEHLKRHFREKSSGP 43
Score = 60.2 bits (147), Expect = 5e-12
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQPYKC 793
Y C CGK F R ++L HL+ H E+
Sbjct: 13 YGCNECGKNFGRHSHLIEHLKRHFREKSSGP 43
Score = 47.1 bits (113), Expect = 2e-07
Identities = 13/39 (33%), Positives = 16/39 (41%)
Query: 246 THHVGARQHACQECGKTFATSSGLKQHTHIHSSVKPFRC 284
+ G R + C ECGK F S L +H H K
Sbjct: 5 SSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGP 43
Score = 42.5 bits (101), Expect = 9e-06
Identities = 9/34 (26%), Positives = 15/34 (44%)
Query: 271 QHTHIHSSVKPFRCEVCHKAYTQFSNLCRHKRMH 304
S +P+ C C K + + S+L H + H
Sbjct: 2 SSGSSGSGERPYGCNECGKNFGRHSHLIEHLKRH 35
Score = 40.2 bits (95), Expect = 7e-05
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 81 NIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 111
+ + E+P+ C C + FG+ ++L HLK+H
Sbjct: 5 SSGSGERPYGCNECGKNFGRHSHLIEHLKRH 35
Score = 40.2 bits (95), Expect = 7e-05
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 812 NIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 842
+ + E+P+ C C + FG+ ++L HLK+H
Sbjct: 5 SSGSGERPYGCNECGKNFGRHSHLIEHLKRH 35
Score = 32.5 bits (75), Expect = 0.033
Identities = 9/43 (20%), Positives = 16/43 (37%), Gaps = 4/43 (9%)
Query: 216 HQAQVH-GRK-FPCENCTKVFSDPSNLQRHIRTHHVGARQHAC 256
+ G + + C C K F S+L H++ H +
Sbjct: 3 SGS-SGSGERPYGCNECGKNFGRHSHLIEHLKR-HFREKSSGP 43
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2ena_A 2en4_A
Length = 46
Score = 65.6 bits (161), Expect = 6e-14
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 49 RHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 91
+ TGE+P+KC C + FS S L H + +H EKP
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHK-LHTGEKPSGP 43
Score = 65.6 bits (161), Expect = 6e-14
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 780 RHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 822
+ TGE+P+KC C + FS S L H + +H EKP
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHK-LHTGEKPSGP 43
Score = 56.4 bits (137), Expect = 1e-10
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQPYKC 62
+ C CGK F R + L H + HTGE+P
Sbjct: 13 FKCVECGKGFSRRSALNVHHKLHTGEKPSGP 43
Score = 56.4 bits (137), Expect = 1e-10
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQPYKC 793
+ C CGK F R + L H + HTGE+P
Sbjct: 13 FKCVECGKGFSRRSALNVHHKLHTGEKPSGP 43
Score = 46.4 bits (111), Expect = 4e-07
Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 242 RHIRTHHVGARQHACQECGKTFATSSGLKQHTHIHSSVKPFRC 284
+ G + C ECGK F+ S L H +H+ KP
Sbjct: 2 SSGSSG-TGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGP 43
Score = 41.7 bits (99), Expect = 2e-05
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 271 QHTHIHSSVKPFRCEVCHKAYTQFSNLCRHKRMH 304
+ KPF+C C K +++ S L H ++H
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLH 35
Score = 37.1 bits (87), Expect = 7e-04
Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 77 RHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 111
EKPFKC C + F +++ L+ H K H
Sbjct: 2 SSGS-SGTGEKPFKCVECGKGFSRRSALNVHHKLH 35
Score = 37.1 bits (87), Expect = 7e-04
Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 808 RHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 842
EKPFKC C + F +++ L+ H K H
Sbjct: 2 SSGS-SGTGEKPFKCVECGKGFSRRSALNVHHKLH 35
Score = 31.7 bits (73), Expect = 0.062
Identities = 12/34 (35%), Positives = 13/34 (38%), Gaps = 3/34 (8%)
Query: 216 HQAQVH-GRK-FPCENCTKVFSDPSNLQRHIRTH 247
G K F C C K FS S L H + H
Sbjct: 3 SG-SSGTGEKPFKCVECGKGFSRRSALNVHHKLH 35
Score = 28.3 bits (64), Expect = 1.1
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 198 YRCESCSQTFCWRPHLNFHQ 217
++C C + F R LN H
Sbjct: 13 FKCVECGKGFSRRSALNVHH 32
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens}
Length = 46
Score = 65.6 bits (161), Expect = 6e-14
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 50 HLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 91
+ G PYKC CE+SFS L H R +H +EKP
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQR-MHTREKPSGP 43
Score = 65.6 bits (161), Expect = 6e-14
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 781 HLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 822
+ G PYKC CE+SFS L H R +H +EKP
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQR-MHTREKPSGP 43
Score = 53.7 bits (130), Expect = 1e-09
Identities = 12/31 (38%), Positives = 13/31 (41%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQPYKC 62
Y C C K F L H R HT E+P
Sbjct: 13 YKCSQCEKSFSGKLRLLVHQRMHTREKPSGP 43
Score = 53.7 bits (130), Expect = 1e-09
Identities = 12/31 (38%), Positives = 13/31 (41%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQPYKC 793
Y C C K F L H R HT E+P
Sbjct: 13 YKCSQCEKSFSGKLRLLVHQRMHTREKPSGP 43
Score = 43.7 bits (104), Expect = 3e-06
Identities = 10/42 (23%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 243 HIRTHHVGARQHACQECGKTFATSSGLKQHTHIHSSVKPFRC 284
+ G + C +C K+F+ L H +H+ KP
Sbjct: 3 SGSSG-AGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGP 43
Score = 42.1 bits (100), Expect = 1e-05
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 272 HTHIHSSVKPFRCEVCHKAYTQFSNLCRHKRMH 304
+ V P++C C K+++ L H+RMH
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMH 35
Score = 37.1 bits (87), Expect = 8e-04
Identities = 8/32 (25%), Positives = 14/32 (43%)
Query: 80 RNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 111
+ P+KC C++ F + L H + H
Sbjct: 4 GSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMH 35
Score = 37.1 bits (87), Expect = 8e-04
Identities = 8/32 (25%), Positives = 14/32 (43%)
Query: 811 RNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 842
+ P+KC C++ F + L H + H
Sbjct: 4 GSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMH 35
Score = 30.2 bits (69), Expect = 0.22
Identities = 9/21 (42%), Positives = 9/21 (42%)
Query: 227 CENCTKVFSDPSNLQRHIRTH 247
C C K FS L H R H
Sbjct: 15 CSQCEKSFSGKLRLLVHQRMH 35
Score = 27.5 bits (62), Expect = 2.2
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 198 YRCESCSQTFCWRPHLNFHQ 217
Y+C C ++F + L HQ
Sbjct: 13 YKCSQCEKSFSGKLRLLVHQ 32
Score = 26.3 bits (59), Expect = 5.8
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 312 KCVKCDQSFSTVTSLSKHKR 331
KC +C++SFS L H+R
Sbjct: 14 KCSQCEKSFSGKLRLLVHQR 33
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 65.6 bits (161), Expect = 7e-14
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 49 RHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 91
+ +GE+P++C+ C + F+ +S+L H R +H EKP
Sbjct: 2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQR-VHTGEKPSGP 43
Score = 65.6 bits (161), Expect = 7e-14
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 780 RHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 822
+ +GE+P++C+ C + F+ +S+L H R +H EKP
Sbjct: 2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQR-VHTGEKPSGP 43
Score = 56.8 bits (138), Expect = 8e-11
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQPYKC 62
+ C+ CGK F ++++L H R HTGE+P
Sbjct: 13 FQCEECGKRFTQNSHLHSHQRVHTGEKPSGP 43
Score = 56.8 bits (138), Expect = 8e-11
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQPYKC 793
+ C+ CGK F ++++L H R HTGE+P
Sbjct: 13 FQCEECGKRFTQNSHLHSHQRVHTGEKPSGP 43
Score = 47.2 bits (113), Expect = 3e-07
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 242 RHIRTHHVGARQHACQECGKTFATSSGLKQHTHIHSSVKPFRC 284
+ G + C+ECGK F +S L H +H+ KP
Sbjct: 2 SSGSSG-SGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGP 43
Score = 45.2 bits (108), Expect = 1e-06
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 271 QHTHIHSSVKPFRCEVCHKAYTQFSNLCRHKRMH 304
S KPF+CE C K +TQ S+L H+R+H
Sbjct: 2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVH 35
Score = 37.9 bits (89), Expect = 4e-04
Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 77 RHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 111
+ EKPF+C C + F Q ++L H + H
Sbjct: 2 SSGS-SGSGEKPFQCEECGKRFTQNSHLHSHQRVH 35
Score = 37.9 bits (89), Expect = 4e-04
Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 808 RHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 842
+ EKPF+C C + F Q ++L H + H
Sbjct: 2 SSGS-SGSGEKPFQCEECGKRFTQNSHLHSHQRVH 35
Score = 31.4 bits (72), Expect = 0.094
Identities = 13/34 (38%), Positives = 15/34 (44%), Gaps = 3/34 (8%)
Query: 216 HQAQVH-GRK-FPCENCTKVFSDPSNLQRHIRTH 247
G K F CE C K F+ S+L H R H
Sbjct: 3 SG-SSGSGEKPFQCEECGKRFTQNSHLHSHQRVH 35
Score = 28.3 bits (64), Expect = 1.2
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 198 YRCESCSQTFCWRPHLNFHQ 217
++CE C + F HL+ HQ
Sbjct: 13 FQCEECGKRFTQNSHLHSHQ 32
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 65.6 bits (161), Expect = 7e-14
Identities = 19/42 (45%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 50 HLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 91
+ TGE+PY C C +SF S+L RH R IH EKP
Sbjct: 3 SGSSGTGEKPYICNECGKSFIQKSHLNRHRR-IHTGEKPSGP 43
Score = 65.6 bits (161), Expect = 7e-14
Identities = 19/42 (45%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 781 HLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 822
+ TGE+PY C C +SF S+L RH R IH EKP
Sbjct: 3 SGSSGTGEKPYICNECGKSFIQKSHLNRHRR-IHTGEKPSGP 43
Score = 58.3 bits (142), Expect = 3e-11
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQPYKC 62
Y C CGK F + ++L RH R HTGE+P
Sbjct: 13 YICNECGKSFIQKSHLNRHRRIHTGEKPSGP 43
Score = 58.3 bits (142), Expect = 3e-11
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQPYKC 793
Y C CGK F + ++L RH R HTGE+P
Sbjct: 13 YICNECGKSFIQKSHLNRHRRIHTGEKPSGP 43
Score = 46.0 bits (110), Expect = 6e-07
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 243 HIRTHHVGARQHACQECGKTFATSSGLKQHTHIHSSVKPFRCE 285
+ G + + C ECGK+F S L +H IH+ KP
Sbjct: 3 SGSSG-TGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGPS 44
Score = 43.7 bits (104), Expect = 4e-06
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 271 QHTHIHSSVKPFRCEVCHKAYTQFSNLCRHKRMH 304
+ KP+ C C K++ Q S+L RH+R+H
Sbjct: 2 SSGSSGTGEKPYICNECGKSFIQKSHLNRHRRIH 35
Score = 37.1 bits (87), Expect = 0.001
Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 78 HVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 111
EKP+ C C + F Q+++L+RH + H
Sbjct: 3 SGS-SGTGEKPYICNECGKSFIQKSHLNRHRRIH 35
Score = 37.1 bits (87), Expect = 0.001
Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 809 HVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 842
EKP+ C C + F Q+++L+RH + H
Sbjct: 3 SGS-SGTGEKPYICNECGKSFIQKSHLNRHRRIH 35
Score = 31.7 bits (73), Expect = 0.065
Identities = 12/34 (35%), Positives = 14/34 (41%), Gaps = 3/34 (8%)
Query: 216 HQAQVH-GRK-FPCENCTKVFSDPSNLQRHIRTH 247
G K + C C K F S+L RH R H
Sbjct: 3 SG-SSGTGEKPYICNECGKSFIQKSHLNRHRRIH 35
Score = 28.2 bits (64), Expect = 1.1
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 198 YRCESCSQTFCWRPHLNFHQ 217
Y C C ++F + HLN H+
Sbjct: 13 YICNECGKSFIQKSHLNRHR 32
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 65.6 bits (161), Expect = 7e-14
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 50 HLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 91
+ G++ +KC C+++F+ SS+L H R IH EKP
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQR-IHTGEKPSGP 43
Score = 65.6 bits (161), Expect = 7e-14
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 781 HLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 822
+ G++ +KC C+++F+ SS+L H R IH EKP
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQR-IHTGEKPSGP 43
Score = 56.4 bits (137), Expect = 1e-10
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQPYKC 62
+ C C K F +S++LT H R HTGE+P
Sbjct: 13 FKCNECKKTFTQSSSLTVHQRIHTGEKPSGP 43
Score = 56.4 bits (137), Expect = 1e-10
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQPYKC 793
+ C C K F +S++LT H R HTGE+P
Sbjct: 13 FKCNECKKTFTQSSSLTVHQRIHTGEKPSGP 43
Score = 45.6 bits (109), Expect = 7e-07
Identities = 15/42 (35%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 243 HIRTHHVGARQHACQECGKTFATSSGLKQHTHIHSSVKPFRC 284
+ G + C EC KTF SS L H IH+ KP
Sbjct: 3 SGSSG-AGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGP 43
Score = 44.4 bits (106), Expect = 2e-06
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 272 HTHIHSSVKPFRCEVCHKAYTQFSNLCRHKRMH 304
+ K F+C C K +TQ S+L H+R+H
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIH 35
Score = 36.3 bits (85), Expect = 0.001
Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 78 HVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 111
+K FKC C + F Q ++L H + H
Sbjct: 3 SGS-SGAGKKLFKCNECKKTFTQSSSLTVHQRIH 35
Score = 36.3 bits (85), Expect = 0.001
Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 809 HVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 842
+K FKC C + F Q ++L H + H
Sbjct: 3 SGS-SGAGKKLFKCNECKKTFTQSSSLTVHQRIH 35
Score = 30.6 bits (70), Expect = 0.18
Identities = 12/34 (35%), Positives = 15/34 (44%), Gaps = 3/34 (8%)
Query: 216 HQAQVH-GRK-FPCENCTKVFSDPSNLQRHIRTH 247
G+K F C C K F+ S+L H R H
Sbjct: 3 SG-SSGAGKKLFKCNECKKTFTQSSSLTVHQRIH 35
Score = 25.9 bits (58), Expect = 7.0
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 198 YRCESCSQTFCWRPHLNFHQ 217
++C C +TF L HQ
Sbjct: 13 FKCNECKKTFTQSSSLTVHQ 32
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 65.6 bits (161), Expect = 7e-14
Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 50 HLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 91
+ TGE+PYKC C + F+ +S+L RH IH EKP
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRG-IHTGEKPSGP 43
Score = 65.6 bits (161), Expect = 7e-14
Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 781 HLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 822
+ TGE+PYKC C + F+ +S+L RH IH EKP
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRG-IHTGEKPSGP 43
Score = 57.9 bits (141), Expect = 3e-11
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQPYKC 62
Y C CGKVF ++++L RH HTGE+P
Sbjct: 13 YKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 57.9 bits (141), Expect = 3e-11
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQPYKC 793
Y C CGKVF ++++L RH HTGE+P
Sbjct: 13 YKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 45.6 bits (109), Expect = 7e-07
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 243 HIRTHHVGARQHACQECGKTFATSSGLKQHTHIHSSVKPFRCE 285
+ G + + C ECGK F +S L +H IH+ KP
Sbjct: 3 SGSSG-TGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
Score = 44.8 bits (107), Expect = 2e-06
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 272 HTHIHSSVKPFRCEVCHKAYTQFSNLCRHKRMH 304
+ KP++C C K +TQ S+L RH+ +H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRGIH 35
Score = 36.7 bits (86), Expect = 0.001
Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 78 HVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 111
EKP+KC C + F Q ++L RH H
Sbjct: 3 SGS-SGTGEKPYKCNECGKVFTQNSHLARHRGIH 35
Score = 36.7 bits (86), Expect = 0.001
Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 809 HVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 842
EKP+KC C + F Q ++L RH H
Sbjct: 3 SGS-SGTGEKPYKCNECGKVFTQNSHLARHRGIH 35
Score = 30.9 bits (71), Expect = 0.13
Identities = 12/34 (35%), Positives = 15/34 (44%), Gaps = 3/34 (8%)
Query: 216 HQAQVH-GRK-FPCENCTKVFSDPSNLQRHIRTH 247
G K + C C KVF+ S+L RH H
Sbjct: 3 SG-SSGTGEKPYKCNECGKVFTQNSHLARHRGIH 35
Score = 26.7 bits (60), Expect = 3.9
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 198 YRCESCSQTFCWRPHLNFHQ 217
Y+C C + F HL H+
Sbjct: 13 YKCNECGKVFTQNSHLARHR 32
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 65.6 bits (161), Expect = 8e-14
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 50 HLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 91
+ TG++PYKC C + F+ +S+L RH IH EKP
Sbjct: 3 SGSSGTGKKPYKCNECGKVFTQNSHLARHRG-IHTGEKPSGP 43
Score = 65.6 bits (161), Expect = 8e-14
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 781 HLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 822
+ TG++PYKC C + F+ +S+L RH IH EKP
Sbjct: 3 SGSSGTGKKPYKCNECGKVFTQNSHLARHRG-IHTGEKPSGP 43
Score = 57.9 bits (141), Expect = 3e-11
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQPYKC 62
Y C CGKVF ++++L RH HTGE+P
Sbjct: 13 YKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 57.9 bits (141), Expect = 3e-11
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQPYKC 793
Y C CGKVF ++++L RH HTGE+P
Sbjct: 13 YKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 46.0 bits (110), Expect = 5e-07
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 243 HIRTHHVGARQHACQECGKTFATSSGLKQHTHIHSSVKPFRCE 285
+ G + + C ECGK F +S L +H IH+ KP
Sbjct: 3 SGSSG-TGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
Score = 44.8 bits (107), Expect = 2e-06
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 272 HTHIHSSVKPFRCEVCHKAYTQFSNLCRHKRMH 304
+ KP++C C K +TQ S+L RH+ +H
Sbjct: 3 SGSSGTGKKPYKCNECGKVFTQNSHLARHRGIH 35
Score = 37.1 bits (87), Expect = 7e-04
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 78 HVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 111
+KP+KC C + F Q ++L RH H
Sbjct: 3 SGS-SGTGKKPYKCNECGKVFTQNSHLARHRGIH 35
Score = 37.1 bits (87), Expect = 7e-04
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 809 HVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 842
+KP+KC C + F Q ++L RH H
Sbjct: 3 SGS-SGTGKKPYKCNECGKVFTQNSHLARHRGIH 35
Score = 30.6 bits (70), Expect = 0.16
Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 3/34 (8%)
Query: 216 HQAQVH-GRK-FPCENCTKVFSDPSNLQRHIRTH 247
G+K + C C KVF+ S+L RH H
Sbjct: 3 SG-SSGTGKKPYKCNECGKVFTQNSHLARHRGIH 35
Score = 26.7 bits (60), Expect = 3.7
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 198 YRCESCSQTFCWRPHLNFHQ 217
Y+C C + F HL H+
Sbjct: 13 YKCNECGKVFTQNSHLARHR 32
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 65.2 bits (160), Expect = 8e-14
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 50 HLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 91
+ TGE+P+ C C ++FS L +H R IH EKP
Sbjct: 3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRR-IHTGEKPSGP 43
Score = 65.2 bits (160), Expect = 8e-14
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 781 HLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 822
+ TGE+P+ C C ++FS L +H R IH EKP
Sbjct: 3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRR-IHTGEKPSGP 43
Score = 57.1 bits (139), Expect = 7e-11
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQPYKC 62
+ C CGK F L +H R HTGE+P
Sbjct: 13 FDCIDCGKAFSDHIGLNQHRRIHTGEKPSGP 43
Score = 57.1 bits (139), Expect = 7e-11
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQPYKC 793
+ C CGK F L +H R HTGE+P
Sbjct: 13 FDCIDCGKAFSDHIGLNQHRRIHTGEKPSGP 43
Score = 46.7 bits (112), Expect = 3e-07
Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 243 HIRTHHVGARQHACQECGKTFATSSGLKQHTHIHSSVKPFRCE 285
+ G + C +CGK F+ GL QH IH+ KP
Sbjct: 3 SGSSG-TGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPS 44
Score = 45.2 bits (108), Expect = 9e-07
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 271 QHTHIHSSVKPFRCEVCHKAYTQFSNLCRHKRMH 304
+ KPF C C KA++ L +H+R+H
Sbjct: 2 SSGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIH 35
Score = 36.7 bits (86), Expect = 0.001
Identities = 10/34 (29%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 78 HVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 111
EKPF C C + F L++H + H
Sbjct: 3 SGS-SGTGEKPFDCIDCGKAFSDHIGLNQHRRIH 35
Score = 36.7 bits (86), Expect = 0.001
Identities = 10/34 (29%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 809 HVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 842
EKPF C C + F L++H + H
Sbjct: 3 SGS-SGTGEKPFDCIDCGKAFSDHIGLNQHRRIH 35
Score = 32.9 bits (76), Expect = 0.028
Identities = 13/34 (38%), Positives = 15/34 (44%), Gaps = 3/34 (8%)
Query: 216 HQAQVH-GRK-FPCENCTKVFSDPSNLQRHIRTH 247
G K F C +C K FSD L +H R H
Sbjct: 3 SG-SSGTGEKPFDCIDCGKAFSDHIGLNQHRRIH 35
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 65.3 bits (160), Expect = 9e-14
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 50 HLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 91
+ TGE+PYKC C +SF+ S L+ H + H E+
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQK-CHTGERHSGP 43
Score = 65.3 bits (160), Expect = 9e-14
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 781 HLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 822
+ TGE+PYKC C +SF+ S L+ H + H E+
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQK-CHTGERHSGP 43
Score = 55.6 bits (135), Expect = 2e-10
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQPYKC 62
Y C CGK F + L H + HTGE+
Sbjct: 13 YKCSDCGKSFTWKSRLRIHQKCHTGERHSGP 43
Score = 55.6 bits (135), Expect = 2e-10
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQPYKC 793
Y C CGK F + L H + HTGE+
Sbjct: 13 YKCSDCGKSFTWKSRLRIHQKCHTGERHSGP 43
Score = 45.2 bits (108), Expect = 1e-06
Identities = 10/42 (23%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 243 HIRTHHVGARQHACQECGKTFATSSGLKQHTHIHSSVKPFRC 284
+ G + + C +CGK+F S L+ H H+ +
Sbjct: 3 SGSSG-TGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGP 43
Score = 42.1 bits (100), Expect = 1e-05
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 272 HTHIHSSVKPFRCEVCHKAYTQFSNLCRHKRMH 304
+ KP++C C K++T S L H++ H
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCH 35
Score = 38.3 bits (90), Expect = 3e-04
Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 78 HVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 111
EKP+KC C + F ++ L H K H
Sbjct: 3 SGS-SGTGEKPYKCSDCGKSFTWKSRLRIHQKCH 35
Score = 38.3 bits (90), Expect = 3e-04
Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 809 HVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 842
EKP+KC C + F ++ L H K H
Sbjct: 3 SGS-SGTGEKPYKCSDCGKSFTWKSRLRIHQKCH 35
Score = 31.4 bits (72), Expect = 0.11
Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 3/34 (8%)
Query: 216 HQAQVH-GRK-FPCENCTKVFSDPSNLQRHIRTH 247
G K + C +C K F+ S L+ H + H
Sbjct: 3 SG-SSGTGEKPYKCSDCGKSFTWKSRLRIHQKCH 35
Score = 29.8 bits (68), Expect = 0.31
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 198 YRCESCSQTFCWRPHLNFHQ 217
Y+C C ++F W+ L HQ
Sbjct: 13 YKCSDCGKSFTWKSRLRIHQ 32
Score = 26.0 bits (58), Expect = 7.8
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 312 KCVKCDQSFSTVTSLSKHKR 331
KC C +SF+ + L H++
Sbjct: 14 KCSDCGKSFTWKSRLRIHQK 33
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 45
Score = 65.3 bits (160), Expect = 9e-14
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 50 HLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 91
+ TG++P++C +C +SF NL H R IH EK
Sbjct: 3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQR-IHTGEKSGPS 43
Score = 65.3 bits (160), Expect = 9e-14
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 781 HLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 822
+ TG++P++C +C +SF NL H R IH EK
Sbjct: 3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQR-IHTGEKSGPS 43
Score = 57.2 bits (139), Expect = 7e-11
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQPYKC 62
+ C +CGK F NL H R HTGE+
Sbjct: 13 FECTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43
Score = 57.2 bits (139), Expect = 7e-11
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQPYKC 793
+ C +CGK F NL H R HTGE+
Sbjct: 13 FECTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43
Score = 45.2 bits (108), Expect = 1e-06
Identities = 11/42 (26%), Positives = 15/42 (35%), Gaps = 1/42 (2%)
Query: 243 HIRTHHVGARQHACQECGKTFATSSGLKQHTHIHSSVKPFRC 284
+ G + C CGK+F L H IH+ K
Sbjct: 3 SGSSG-TGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43
Score = 42.1 bits (100), Expect = 1e-05
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 272 HTHIHSSVKPFRCEVCHKAYTQFSNLCRHKRMH 304
+ KPF C C K++ NL H+R+H
Sbjct: 3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIH 35
Score = 36.4 bits (85), Expect = 0.002
Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 78 HVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 111
+KPF+C C + F + NL H + H
Sbjct: 3 SGS-SGTGQKPFECTHCGKSFRAKGNLVTHQRIH 35
Score = 36.4 bits (85), Expect = 0.002
Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 809 HVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 842
+KPF+C C + F + NL H + H
Sbjct: 3 SGS-SGTGQKPFECTHCGKSFRAKGNLVTHQRIH 35
Score = 31.0 bits (71), Expect = 0.12
Identities = 12/34 (35%), Positives = 14/34 (41%), Gaps = 3/34 (8%)
Query: 216 HQAQVH-GRK-FPCENCTKVFSDPSNLQRHIRTH 247
G+K F C +C K F NL H R H
Sbjct: 3 SG-SSGTGQKPFECTHCGKSFRAKGNLVTHQRIH 35
Score = 26.7 bits (60), Expect = 4.5
Identities = 6/20 (30%), Positives = 11/20 (55%)
Query: 198 YRCESCSQTFCWRPHLNFHQ 217
+ C C ++F + +L HQ
Sbjct: 13 FECTHCGKSFRAKGNLVTHQ 32
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 64.9 bits (159), Expect = 1e-13
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 50 HLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 91
+ TGE+PYKC C ++F +S+ +H R +H ++P
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQR-LHTGQRPSGP 43
Score = 64.9 bits (159), Expect = 1e-13
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 781 HLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 822
+ TGE+PYKC C ++F +S+ +H R +H ++P
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQR-LHTGQRPSGP 43
Score = 56.8 bits (138), Expect = 8e-11
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQPYKC 62
Y C CGK F +++ T+H R HTG++P
Sbjct: 13 YKCMECGKAFGDNSSCTQHQRLHTGQRPSGP 43
Score = 56.8 bits (138), Expect = 8e-11
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQPYKC 793
Y C CGK F +++ T+H R HTG++P
Sbjct: 13 YKCMECGKAFGDNSSCTQHQRLHTGQRPSGP 43
Score = 48.0 bits (115), Expect = 1e-07
Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 243 HIRTHHVGARQHACQECGKTFATSSGLKQHTHIHSSVKPFRCE 285
+ G + + C ECGK F +S QH +H+ +P
Sbjct: 3 SGSSG-TGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPS 44
Score = 43.0 bits (102), Expect = 7e-06
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 272 HTHIHSSVKPFRCEVCHKAYTQFSNLCRHKRMH 304
+ KP++C C KA+ S+ +H+R+H
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLH 35
Score = 34.9 bits (81), Expect = 0.005
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 78 HVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 111
EKP+KC C + FG ++ +H + H
Sbjct: 3 SGS-SGTGEKPYKCMECGKAFGDNSSCTQHQRLH 35
Score = 34.9 bits (81), Expect = 0.005
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 809 HVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 842
EKP+KC C + FG ++ +H + H
Sbjct: 3 SGS-SGTGEKPYKCMECGKAFGDNSSCTQHQRLH 35
Score = 31.4 bits (72), Expect = 0.087
Identities = 11/34 (32%), Positives = 14/34 (41%), Gaps = 3/34 (8%)
Query: 216 HQAQVH-GRK-FPCENCTKVFSDPSNLQRHIRTH 247
G K + C C K F D S+ +H R H
Sbjct: 3 SG-SSGTGEKPYKCMECGKAFGDNSSCTQHQRLH 35
Score = 26.8 bits (60), Expect = 3.6
Identities = 6/20 (30%), Positives = 8/20 (40%)
Query: 198 YRCESCSQTFCWRPHLNFHQ 217
Y+C C + F HQ
Sbjct: 13 YKCMECGKAFGDNSSCTQHQ 32
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 64.8 bits (159), Expect = 1e-13
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 50 HLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 91
+ TGE P+ C C + F+ +NL H + IH E+P
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIHQK-IHTGERPSGP 43
Score = 64.8 bits (159), Expect = 1e-13
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 781 HLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 822
+ TGE P+ C C + F+ +NL H + IH E+P
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIHQK-IHTGERPSGP 43
Score = 56.0 bits (136), Expect = 2e-10
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQPYKC 62
+ C CGKVF NL H + HTGE+P
Sbjct: 13 FICSECGKVFTHKTNLIIHQKIHTGERPSGP 43
Score = 56.0 bits (136), Expect = 2e-10
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQPYKC 793
+ C CGKVF NL H + HTGE+P
Sbjct: 13 FICSECGKVFTHKTNLIIHQKIHTGERPSGP 43
Score = 46.0 bits (110), Expect = 5e-07
Identities = 12/42 (28%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 243 HIRTHHVGARQHACQECGKTFATSSGLKQHTHIHSSVKPFRC 284
+ G C ECGK F + L H IH+ +P
Sbjct: 3 SGSSG-TGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGP 43
Score = 41.7 bits (99), Expect = 2e-05
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 272 HTHIHSSVKPFRCEVCHKAYTQFSNLCRHKRMH 304
+ PF C C K +T +NL H+++H
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKIH 35
Score = 37.5 bits (88), Expect = 6e-04
Identities = 12/34 (35%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 78 HVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 111
E PF C C + F +TNL H K H
Sbjct: 3 SGS-SGTGENPFICSECGKVFTHKTNLIIHQKIH 35
Score = 37.5 bits (88), Expect = 6e-04
Identities = 12/34 (35%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 809 HVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 842
E PF C C + F +TNL H K H
Sbjct: 3 SGS-SGTGENPFICSECGKVFTHKTNLIIHQKIH 35
Score = 31.7 bits (73), Expect = 0.076
Identities = 11/34 (32%), Positives = 14/34 (41%), Gaps = 3/34 (8%)
Query: 216 HQAQVH-GRK-FPCENCTKVFSDPSNLQRHIRTH 247
G F C C KVF+ +NL H + H
Sbjct: 3 SG-SSGTGENPFICSECGKVFTHKTNLIIHQKIH 35
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 64.8 bits (159), Expect = 1e-13
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 49 RHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 91
+ TGE PY+C C ++FS L H R H EKP
Sbjct: 2 SSGSSGTGENPYECHECGKAFSRKYQLISHQR-THAGEKPSGP 43
Score = 64.8 bits (159), Expect = 1e-13
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 780 RHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 822
+ TGE PY+C C ++FS L H R H EKP
Sbjct: 2 SSGSSGTGENPYECHECGKAFSRKYQLISHQR-THAGEKPSGP 43
Score = 58.3 bits (142), Expect = 2e-11
Identities = 15/31 (48%), Positives = 16/31 (51%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQPYKC 62
Y C CGK F R L H RTH GE+P
Sbjct: 13 YECHECGKAFSRKYQLISHQRTHAGEKPSGP 43
Score = 58.3 bits (142), Expect = 2e-11
Identities = 15/31 (48%), Positives = 16/31 (51%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQPYKC 793
Y C CGK F R L H RTH GE+P
Sbjct: 13 YECHECGKAFSRKYQLISHQRTHAGEKPSGP 43
Score = 46.3 bits (111), Expect = 4e-07
Identities = 12/43 (27%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Query: 242 RHIRTHHVGARQHACQECGKTFATSSGLKQHTHIHSSVKPFRC 284
+ G + C ECGK F+ L H H+ KP
Sbjct: 2 SSGSSG-TGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGP 43
Score = 43.7 bits (104), Expect = 4e-06
Identities = 9/34 (26%), Positives = 15/34 (44%)
Query: 271 QHTHIHSSVKPFRCEVCHKAYTQFSNLCRHKRMH 304
+ P+ C C KA+++ L H+R H
Sbjct: 2 SSGSSGTGENPYECHECGKAFSRKYQLISHQRTH 35
Score = 36.3 bits (85), Expect = 0.001
Identities = 8/35 (22%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 77 RHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 111
E P++C C + F ++ L H + H
Sbjct: 2 SSGS-SGTGENPYECHECGKAFSRKYQLISHQRTH 35
Score = 36.3 bits (85), Expect = 0.001
Identities = 8/35 (22%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 808 RHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 842
E P++C C + F ++ L H + H
Sbjct: 2 SSGS-SGTGENPYECHECGKAFSRKYQLISHQRTH 35
Score = 31.3 bits (72), Expect = 0.099
Identities = 11/34 (32%), Positives = 12/34 (35%), Gaps = 3/34 (8%)
Query: 216 HQAQVH-GRK-FPCENCTKVFSDPSNLQRHIRTH 247
G + C C K FS L H RTH
Sbjct: 3 SG-SSGTGENPYECHECGKAFSRKYQLISHQRTH 35
Score = 26.3 bits (59), Expect = 5.4
Identities = 7/20 (35%), Positives = 9/20 (45%)
Query: 198 YRCESCSQTFCWRPHLNFHQ 217
Y C C + F + L HQ
Sbjct: 13 YECHECGKAFSRKYQLISHQ 32
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 64.8 bits (159), Expect = 1e-13
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 50 HLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 91
+ TGE+PYKC C + F+ +S+L RH R +H KP
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRR-VHTGGKPSGP 43
Score = 64.8 bits (159), Expect = 1e-13
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 781 HLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 822
+ TGE+PYKC C + F+ +S+L RH R +H KP
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRR-VHTGGKPSGP 43
Score = 57.9 bits (141), Expect = 3e-11
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQPYKC 62
Y C CGKVF ++++L RH R HTG +P
Sbjct: 13 YKCNECGKVFTQNSHLARHRRVHTGGKPSGP 43
Score = 57.9 bits (141), Expect = 3e-11
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQPYKC 793
Y C CGKVF ++++L RH R HTG +P
Sbjct: 13 YKCNECGKVFTQNSHLARHRRVHTGGKPSGP 43
Score = 45.6 bits (109), Expect = 8e-07
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 243 HIRTHHVGARQHACQECGKTFATSSGLKQHTHIHSSVKPFRCE 285
+ G + + C ECGK F +S L +H +H+ KP
Sbjct: 3 SGSSG-TGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGPS 44
Score = 43.7 bits (104), Expect = 3e-06
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 272 HTHIHSSVKPFRCEVCHKAYTQFSNLCRHKRMH 304
+ KP++C C K +TQ S+L RH+R+H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRRVH 35
Score = 36.3 bits (85), Expect = 0.001
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 78 HVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 111
EKP+KC C + F Q ++L RH + H
Sbjct: 3 SGS-SGTGEKPYKCNECGKVFTQNSHLARHRRVH 35
Score = 36.3 bits (85), Expect = 0.001
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 809 HVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 842
EKP+KC C + F Q ++L RH + H
Sbjct: 3 SGS-SGTGEKPYKCNECGKVFTQNSHLARHRRVH 35
Score = 31.0 bits (71), Expect = 0.12
Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 3/34 (8%)
Query: 216 HQAQVH-GRK-FPCENCTKVFSDPSNLQRHIRTH 247
G K + C C KVF+ S+L RH R H
Sbjct: 3 SG-SSGTGEKPYKCNECGKVFTQNSHLARHRRVH 35
Score = 25.9 bits (58), Expect = 7.1
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 198 YRCESCSQTFCWRPHLNFHQ 217
Y+C C + F HL H+
Sbjct: 13 YKCNECGKVFTQNSHLARHR 32
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 44
Score = 64.9 bits (159), Expect = 1e-13
Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 49 RHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 91
+ +GE+PY+C C ++F S L H R H
Sbjct: 2 SSGSSGSGEKPYECNECGKAFIWKSLLIVHER-THAGVSGPSS 43
Score = 64.9 bits (159), Expect = 1e-13
Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 780 RHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 822
+ +GE+PY+C C ++F S L H R H
Sbjct: 2 SSGSSGSGEKPYECNECGKAFIWKSLLIVHER-THAGVSGPSS 43
Score = 54.1 bits (131), Expect = 7e-10
Identities = 12/31 (38%), Positives = 13/31 (41%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQPYKC 62
Y C CGK F + L H RTH G
Sbjct: 13 YECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 54.1 bits (131), Expect = 7e-10
Identities = 12/31 (38%), Positives = 13/31 (41%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQPYKC 793
Y C CGK F + L H RTH G
Sbjct: 13 YECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 47.1 bits (113), Expect = 2e-07
Identities = 12/43 (27%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Query: 242 RHIRTHHVGARQHACQECGKTFATSSGLKQHTHIHSSVKPFRC 284
+ G + + C ECGK F S L H H+ V
Sbjct: 2 SSGSSG-SGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 42.9 bits (102), Expect = 6e-06
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 272 HTHIHSSVKPFRCEVCHKAYTQFSNLCRHKRMH 304
S KP+ C C KA+ S L H+R H
Sbjct: 3 SGSSGSGEKPYECNECGKAFIWKSLLIVHERTH 35
Score = 35.6 bits (83), Expect = 0.003
Identities = 9/35 (25%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 77 RHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 111
+ EKP++C C + F ++ L H + H
Sbjct: 2 SSGS-SGSGEKPYECNECGKAFIWKSLLIVHERTH 35
Score = 35.6 bits (83), Expect = 0.003
Identities = 9/35 (25%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 808 RHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 842
+ EKP++C C + F ++ L H + H
Sbjct: 2 SSGS-SGSGEKPYECNECGKAFIWKSLLIVHERTH 35
Score = 31.7 bits (73), Expect = 0.058
Identities = 11/30 (36%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Query: 227 CENCTKVFSDPSNLQRHIRTHHVGARQHAC 256
C C K F S L H RT H G +
Sbjct: 15 CNECGKAFIWKSLLIVHERT-HAGVSGPSS 43
Score = 27.5 bits (62), Expect = 1.8
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 198 YRCESCSQTFCWRPHLNFHQ 217
Y C C + F W+ L H+
Sbjct: 13 YECNECGKAFIWKSLLIVHE 32
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 64.8 bits (159), Expect = 1e-13
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 49 RHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 91
+ TGE+ Y+C C ++F+ S L H R IH EKP
Sbjct: 2 SSGSSGTGERHYECSECGKAFARKSTLIMHQR-IHTGEKPSGP 43
Score = 64.8 bits (159), Expect = 1e-13
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 780 RHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 822
+ TGE+ Y+C C ++F+ S L H R IH EKP
Sbjct: 2 SSGSSGTGERHYECSECGKAFARKSTLIMHQR-IHTGEKPSGP 43
Score = 56.4 bits (137), Expect = 1e-10
Identities = 15/31 (48%), Positives = 17/31 (54%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQPYKC 62
Y C CGK F R + L H R HTGE+P
Sbjct: 13 YECSECGKAFARKSTLIMHQRIHTGEKPSGP 43
Score = 56.4 bits (137), Expect = 1e-10
Identities = 15/31 (48%), Positives = 17/31 (54%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQPYKC 793
Y C CGK F R + L H R HTGE+P
Sbjct: 13 YECSECGKAFARKSTLIMHQRIHTGEKPSGP 43
Score = 48.6 bits (117), Expect = 6e-08
Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 242 RHIRTHHVGARQHACQECGKTFATSSGLKQHTHIHSSVKPFRC 284
+ G R + C ECGK FA S L H IH+ KP
Sbjct: 2 SSGSSG-TGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGP 43
Score = 41.7 bits (99), Expect = 2e-05
Identities = 9/34 (26%), Positives = 16/34 (47%)
Query: 271 QHTHIHSSVKPFRCEVCHKAYTQFSNLCRHKRMH 304
+ + + C C KA+ + S L H+R+H
Sbjct: 2 SSGSSGTGERHYECSECGKAFARKSTLIMHQRIH 35
Score = 34.4 bits (80), Expect = 0.006
Identities = 7/35 (20%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 77 RHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 111
E+ ++C C + F +++ L H + H
Sbjct: 2 SSGS-SGTGERHYECSECGKAFARKSTLIMHQRIH 35
Score = 34.4 bits (80), Expect = 0.006
Identities = 7/35 (20%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 808 RHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 842
E+ ++C C + F +++ L H + H
Sbjct: 2 SSGS-SGTGERHYECSECGKAFARKSTLIMHQRIH 35
Score = 30.2 bits (69), Expect = 0.25
Identities = 10/34 (29%), Positives = 13/34 (38%), Gaps = 3/34 (8%)
Query: 216 HQAQVH-GRK-FPCENCTKVFSDPSNLQRHIRTH 247
G + + C C K F+ S L H R H
Sbjct: 3 SG-SSGTGERHYECSECGKAFARKSTLIMHQRIH 35
Score = 25.9 bits (58), Expect = 9.3
Identities = 7/20 (35%), Positives = 9/20 (45%)
Query: 198 YRCESCSQTFCWRPHLNFHQ 217
Y C C + F + L HQ
Sbjct: 13 YECSECGKAFARKSTLIMHQ 32
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 64.9 bits (159), Expect = 1e-13
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 50 HLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 91
+ +GE+P+KC+ C + F +S H R H+ EKP
Sbjct: 3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQR-SHSGEKPSGP 43
Score = 64.9 bits (159), Expect = 1e-13
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 781 HLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 822
+ +GE+P+KC+ C + F +S H R H+ EKP
Sbjct: 3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQR-SHSGEKPSGP 43
Score = 56.8 bits (138), Expect = 8e-11
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQPYKC 62
+ C+ CGK F ++ H R+H+GE+P
Sbjct: 13 FKCEECGKGFYTNSQCYSHQRSHSGEKPSGP 43
Score = 56.8 bits (138), Expect = 8e-11
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQPYKC 793
+ C+ CGK F ++ H R+H+GE+P
Sbjct: 13 FKCEECGKGFYTNSQCYSHQRSHSGEKPSGP 43
Score = 47.5 bits (114), Expect = 2e-07
Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 243 HIRTHHVGARQHACQECGKTFATSSGLKQHTHIHSSVKPFRCE 285
+ G + C+ECGK F T+S H HS KP
Sbjct: 3 SGSSG-SGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPS 44
Score = 42.5 bits (101), Expect = 9e-06
Identities = 12/34 (35%), Positives = 15/34 (44%)
Query: 271 QHTHIHSSVKPFRCEVCHKAYTQFSNLCRHKRMH 304
S KPF+CE C K + S H+R H
Sbjct: 2 SSGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSH 35
Score = 36.0 bits (84), Expect = 0.002
Identities = 10/34 (29%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 78 HVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 111
+ EKPFKC C + F + H + H
Sbjct: 3 SGS-SGSGEKPFKCEECGKGFYTNSQCYSHQRSH 35
Score = 36.0 bits (84), Expect = 0.002
Identities = 10/34 (29%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 809 HVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 842
+ EKPFKC C + F + H + H
Sbjct: 3 SGS-SGSGEKPFKCEECGKGFYTNSQCYSHQRSH 35
Score = 32.9 bits (76), Expect = 0.026
Identities = 14/47 (29%), Positives = 16/47 (34%), Gaps = 5/47 (10%)
Query: 216 HQAQVH-GRK-FPCENCTKVFSDPSNLQRHIRTHHVGARQHACQECG 260
G K F CE C K F S H R+ H G + G
Sbjct: 3 SG-SSGSGEKPFKCEECGKGFYTNSQCYSHQRS-HSGEKPSGP-SSG 46
Score = 28.3 bits (64), Expect = 1.0
Identities = 6/20 (30%), Positives = 9/20 (45%)
Query: 198 YRCESCSQTFCWRPHLNFHQ 217
++CE C + F HQ
Sbjct: 13 FKCEECGKGFYTNSQCYSHQ 32
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 64.5 bits (158), Expect = 2e-13
Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 50 HLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 91
+ +GE+PYKC C + + +L H R +H EK
Sbjct: 3 SGSSGSGEKPYKCVECGKGYKRRLDLDFHQR-VHTGEKLSGP 43
Score = 64.5 bits (158), Expect = 2e-13
Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 781 HLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 822
+ +GE+PYKC C + + +L H R +H EK
Sbjct: 3 SGSSGSGEKPYKCVECGKGYKRRLDLDFHQR-VHTGEKLSGP 43
Score = 57.5 bits (140), Expect = 5e-11
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQPYKC 62
Y C CGK + R +L H R HTGE+
Sbjct: 13 YKCVECGKGYKRRLDLDFHQRVHTGEKLSGP 43
Score = 57.5 bits (140), Expect = 5e-11
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQPYKC 793
Y C CGK + R +L H R HTGE+
Sbjct: 13 YKCVECGKGYKRRLDLDFHQRVHTGEKLSGP 43
Score = 45.2 bits (108), Expect = 9e-07
Identities = 10/42 (23%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 243 HIRTHHVGARQHACQECGKTFATSSGLKQHTHIHSSVKPFRC 284
+ G + + C ECGK + L H +H+ K
Sbjct: 3 SGSSG-SGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGP 43
Score = 41.4 bits (98), Expect = 2e-05
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 272 HTHIHSSVKPFRCEVCHKAYTQFSNLCRHKRMH 304
S KP++C C K Y + +L H+R+H
Sbjct: 3 SGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVH 35
Score = 38.7 bits (91), Expect = 2e-04
Identities = 10/34 (29%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 78 HVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 111
+ EKP+KC C + + ++ +LD H + H
Sbjct: 3 SGS-SGSGEKPYKCVECGKGYKRRLDLDFHQRVH 35
Score = 38.7 bits (91), Expect = 2e-04
Identities = 10/34 (29%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 809 HVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 842
+ EKP+KC C + + ++ +LD H + H
Sbjct: 3 SGS-SGSGEKPYKCVECGKGYKRRLDLDFHQRVH 35
Score = 31.3 bits (72), Expect = 0.089
Identities = 9/34 (26%), Positives = 12/34 (35%), Gaps = 3/34 (8%)
Query: 216 HQAQVH-GRK-FPCENCTKVFSDPSNLQRHIRTH 247
G K + C C K + +L H R H
Sbjct: 3 SG-SSGSGEKPYKCVECGKGYKRRLDLDFHQRVH 35
Score = 28.7 bits (65), Expect = 0.86
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 198 YRCESCSQTFCWRPHLNFHQ 217
Y+C C + + R L+FHQ
Sbjct: 13 YKCVECGKGYKRRLDLDFHQ 32
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 64.5 bits (158), Expect = 2e-13
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 50 HLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 91
+ TGE+PY+C C +SF S L H R IH E P
Sbjct: 3 SGSSGTGEKPYECSDCGKSFIKKSQLHVHQR-IHTGENPSGP 43
Score = 64.5 bits (158), Expect = 2e-13
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 781 HLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 822
+ TGE+PY+C C +SF S L H R IH E P
Sbjct: 3 SGSSGTGEKPYECSDCGKSFIKKSQLHVHQR-IHTGENPSGP 43
Score = 56.4 bits (137), Expect = 1e-10
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQPYKC 62
Y C CGK F + + L H R HTGE P
Sbjct: 13 YECSDCGKSFIKKSQLHVHQRIHTGENPSGP 43
Score = 56.4 bits (137), Expect = 1e-10
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQPYKC 793
Y C CGK F + + L H R HTGE P
Sbjct: 13 YECSDCGKSFIKKSQLHVHQRIHTGENPSGP 43
Score = 45.6 bits (109), Expect = 7e-07
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 243 HIRTHHVGARQHACQECGKTFATSSGLKQHTHIHSSVKPFRC 284
+ G + + C +CGK+F S L H IH+ P
Sbjct: 3 SGSSG-TGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGP 43
Score = 42.1 bits (100), Expect = 1e-05
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 271 QHTHIHSSVKPFRCEVCHKAYTQFSNLCRHKRMH 304
+ KP+ C C K++ + S L H+R+H
Sbjct: 2 SSGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIH 35
Score = 35.2 bits (82), Expect = 0.003
Identities = 9/34 (26%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 78 HVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 111
EKP++C C + F +++ L H + H
Sbjct: 3 SGS-SGTGEKPYECSDCGKSFIKKSQLHVHQRIH 35
Score = 35.2 bits (82), Expect = 0.003
Identities = 9/34 (26%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 809 HVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 842
EKP++C C + F +++ L H + H
Sbjct: 3 SGS-SGTGEKPYECSDCGKSFIKKSQLHVHQRIH 35
Score = 30.2 bits (69), Expect = 0.27
Identities = 11/34 (32%), Positives = 13/34 (38%), Gaps = 3/34 (8%)
Query: 216 HQAQVH-GRK-FPCENCTKVFSDPSNLQRHIRTH 247
G K + C +C K F S L H R H
Sbjct: 3 SG-SSGTGEKPYECSDCGKSFIKKSQLHVHQRIH 35
Score = 27.5 bits (62), Expect = 2.5
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 198 YRCESCSQTFCWRPHLNFHQ 217
Y C C ++F + L+ HQ
Sbjct: 13 YECSDCGKSFIKKSQLHVHQ 32
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 64.5 bits (158), Expect = 2e-13
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 50 HLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 91
+ +GE+PY C C ++FS S L H R H EKP
Sbjct: 3 SGSSGSGEKPYGCNECGKTFSQKSILSAHQR-THTGEKPSGP 43
Score = 64.5 bits (158), Expect = 2e-13
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 781 HLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 822
+ +GE+PY C C ++FS S L H R H EKP
Sbjct: 3 SGSSGSGEKPYGCNECGKTFSQKSILSAHQR-THTGEKPSGP 43
Score = 57.5 bits (140), Expect = 5e-11
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQPYKC 62
Y C CGK F + + L+ H RTHTGE+P
Sbjct: 13 YGCNECGKTFSQKSILSAHQRTHTGEKPSGP 43
Score = 57.5 bits (140), Expect = 5e-11
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQPYKC 793
Y C CGK F + + L+ H RTHTGE+P
Sbjct: 13 YGCNECGKTFSQKSILSAHQRTHTGEKPSGP 43
Score = 46.8 bits (112), Expect = 3e-07
Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 243 HIRTHHVGARQHACQECGKTFATSSGLKQHTHIHSSVKPFRCE 285
+ G + + C ECGKTF+ S L H H+ KP
Sbjct: 3 SGSSG-SGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPS 44
Score = 40.6 bits (96), Expect = 4e-05
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 272 HTHIHSSVKPFRCEVCHKAYTQFSNLCRHKRMH 304
S KP+ C C K ++Q S L H+R H
Sbjct: 3 SGSSGSGEKPYGCNECGKTFSQKSILSAHQRTH 35
Score = 35.6 bits (83), Expect = 0.003
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 78 HVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 111
+ EKP+ C C + F Q++ L H + H
Sbjct: 3 SGS-SGSGEKPYGCNECGKTFSQKSILSAHQRTH 35
Score = 35.6 bits (83), Expect = 0.003
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 809 HVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 842
+ EKP+ C C + F Q++ L H + H
Sbjct: 3 SGS-SGSGEKPYGCNECGKTFSQKSILSAHQRTH 35
Score = 31.7 bits (73), Expect = 0.073
Identities = 13/34 (38%), Positives = 14/34 (41%), Gaps = 3/34 (8%)
Query: 216 HQAQVH-GRK-FPCENCTKVFSDPSNLQRHIRTH 247
G K + C C K FS S L H RTH
Sbjct: 3 SG-SSGSGEKPYGCNECGKTFSQKSILSAHQRTH 35
Score = 27.9 bits (63), Expect = 1.6
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 198 YRCESCSQTFCWRPHLNFHQ 217
Y C C +TF + L+ HQ
Sbjct: 13 YGCNECGKTFSQKSILSAHQ 32
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 64.1 bits (157), Expect = 2e-13
Identities = 12/43 (27%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 49 RHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 91
+ +G++PY+CK C ++F +L +H R +H E+
Sbjct: 2 SSGSSGSGKKPYECKECRKTFIQIGHLNQHKR-VHTGERSSGP 43
Score = 64.1 bits (157), Expect = 2e-13
Identities = 12/43 (27%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 780 RHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 822
+ +G++PY+CK C ++F +L +H R +H E+
Sbjct: 2 SSGSSGSGKKPYECKECRKTFIQIGHLNQHKR-VHTGERSSGP 43
Score = 58.7 bits (143), Expect = 2e-11
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQPYKCK 63
Y CK C K F + +L +H R HTGE+
Sbjct: 13 YECKECRKTFIQIGHLNQHKRVHTGERSSGPS 44
Score = 58.7 bits (143), Expect = 2e-11
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQPYKCK 794
Y CK C K F + +L +H R HTGE+
Sbjct: 13 YECKECRKTFIQIGHLNQHKRVHTGERSSGPS 44
Score = 45.2 bits (108), Expect = 9e-07
Identities = 11/44 (25%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Query: 242 RHIRTHHVGARQHACQECGKTFATSSGLKQHTHIHSSVKPFRCE 285
+ G + + C+EC KTF L QH +H+ +
Sbjct: 2 SSGSSG-SGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGPS 44
Score = 42.5 bits (101), Expect = 9e-06
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 272 HTHIHSSVKPFRCEVCHKAYTQFSNLCRHKRMH 304
S KP+ C+ C K + Q +L +HKR+H
Sbjct: 3 SGSSGSGKKPYECKECRKTFIQIGHLNQHKRVH 35
Score = 36.0 bits (84), Expect = 0.002
Identities = 9/32 (28%), Positives = 19/32 (59%)
Query: 80 RNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 111
+ + +KP++C C + F Q +L++H + H
Sbjct: 4 GSSGSGKKPYECKECRKTFIQIGHLNQHKRVH 35
Score = 36.0 bits (84), Expect = 0.002
Identities = 9/32 (28%), Positives = 19/32 (59%)
Query: 811 RNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 842
+ + +KP++C C + F Q +L++H + H
Sbjct: 4 GSSGSGKKPYECKECRKTFIQIGHLNQHKRVH 35
Score = 30.2 bits (69), Expect = 0.24
Identities = 10/32 (31%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 227 CENCTKVFSDPSNLQRHIRTHHVGARQHACQE 258
C+ C K F +L +H R H G R
Sbjct: 15 CKECRKTFIQIGHLNQHKRV-HTGERSSGPSS 45
Score = 29.4 bits (67), Expect = 0.38
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 198 YRCESCSQTFCWRPHLNFHQ 217
Y C+ C +TF HLN H+
Sbjct: 13 YECKECRKTFIQIGHLNQHK 32
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 64.1 bits (157), Expect = 3e-13
Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 50 HLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPF 89
+ GE+PY C+ C F L+ H+R IH P
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLR-IHTGSGPS 40
Score = 64.1 bits (157), Expect = 3e-13
Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 781 HLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPF 820
+ GE+PY C+ C F L+ H+R IH P
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLR-IHTGSGPS 40
Score = 54.4 bits (132), Expect = 6e-10
Identities = 13/29 (44%), Positives = 14/29 (48%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQPY 60
Y C+ CG F L HLR HTG P
Sbjct: 12 YPCEICGTRFRHLQTLKSHLRIHTGSGPS 40
Score = 54.4 bits (132), Expect = 6e-10
Identities = 13/29 (44%), Positives = 14/29 (48%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQPY 791
Y C+ CG F L HLR HTG P
Sbjct: 12 YPCEICGTRFRHLQTLKSHLRIHTGSGPS 40
Score = 44.0 bits (105), Expect = 2e-06
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 272 HTHIHSSVKPFRCEVCHKAYTQFSNLCRHKRMH 304
+ KP+ CE+C + L H R+H
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIH 34
Score = 41.7 bits (99), Expect = 2e-05
Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
Query: 243 HIRTHHVGARQHACQECGKTFATSSGLKQHTHIHSSVKPF 282
+ G + + C+ CG F LK H IH+ P
Sbjct: 2 SSGSS-GGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPS 40
Score = 38.6 bits (91), Expect = 2e-04
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 225 FPCENCTKVFSDPSNLQRHIRTH 247
+PCE C F L+ H+R H
Sbjct: 12 YPCEICGTRFRHLQTLKSHLRIH 34
Score = 36.7 bits (86), Expect = 9e-04
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 83 HNKEKPFKCPLCDRCFGQQTNLDRHLKKH 111
EKP+ C +C F L HL+ H
Sbjct: 6 SGGEKPYPCEICGTRFRHLQTLKSHLRIH 34
Score = 36.7 bits (86), Expect = 9e-04
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 814 HNKEKPFKCPLCDRCFGQQTNLDRHLKKH 842
EKP+ C +C F L HL+ H
Sbjct: 6 SGGEKPYPCEICGTRFRHLQTLKSHLRIH 34
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 63.3 bits (155), Expect = 4e-13
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 50 HLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPF 89
+ GE+PYKC+ C F ++L+ HV IH P
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVL-IHTGSGPS 40
Score = 63.3 bits (155), Expect = 4e-13
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 781 HLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPF 820
+ GE+PYKC+ C F ++L+ HV IH P
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVL-IHTGSGPS 40
Score = 54.1 bits (131), Expect = 8e-10
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQPY 60
Y C+ CG F + A+L H+ HTG P
Sbjct: 12 YKCETCGARFVQVAHLRAHVLIHTGSGPS 40
Score = 54.1 bits (131), Expect = 8e-10
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQPY 791
Y C+ CG F + A+L H+ HTG P
Sbjct: 12 YKCETCGARFVQVAHLRAHVLIHTGSGPS 40
Score = 46.7 bits (112), Expect = 3e-07
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 272 HTHIHSSVKPFRCEVCHKAYTQFSNLCRHKRMH 304
+ KP++CE C + Q ++L H +H
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIH 34
Score = 41.7 bits (99), Expect = 2e-05
Identities = 10/40 (25%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Query: 243 HIRTHHVGARQHACQECGKTFATSSGLKQHTHIHSSVKPF 282
+ G + + C+ CG F + L+ H IH+ P
Sbjct: 2 SSGSS-GGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPS 40
Score = 38.3 bits (90), Expect = 2e-04
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 82 IHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 111
EKP+KC C F Q +L H+ H
Sbjct: 5 SSGGEKPYKCETCGARFVQVAHLRAHVLIH 34
Score = 38.3 bits (90), Expect = 2e-04
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 813 IHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 842
EKP+KC C F Q +L H+ H
Sbjct: 5 SSGGEKPYKCETCGARFVQVAHLRAHVLIH 34
Score = 34.8 bits (81), Expect = 0.005
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 227 CENCTKVFSDPSNLQRHIRTH 247
CE C F ++L+ H+ H
Sbjct: 14 CETCGARFVQVAHLRAHVLIH 34
Score = 29.0 bits (66), Expect = 0.56
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 198 YRCESCSQTFCWRPHLNFHQ 217
Y+CE+C F HL H
Sbjct: 12 YKCETCGARFVQVAHLRAHV 31
Score = 25.9 bits (58), Expect = 7.5
Identities = 7/20 (35%), Positives = 7/20 (35%)
Query: 312 KCVKCDQSFSTVTSLSKHKR 331
KC C F V L H
Sbjct: 13 KCETCGARFVQVAHLRAHVL 32
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 63.7 bits (156), Expect = 4e-13
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 50 HLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 91
+ TGE+ Y+C C ++F S L H R IH EKP
Sbjct: 3 SGSSGTGERHYECSECGKAFIQKSTLSMHQR-IHRGEKPSGP 43
Score = 63.7 bits (156), Expect = 4e-13
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 781 HLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 822
+ TGE+ Y+C C ++F S L H R IH EKP
Sbjct: 3 SGSSGTGERHYECSECGKAFIQKSTLSMHQR-IHRGEKPSGP 43
Score = 56.4 bits (137), Expect = 1e-10
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQPYKC 62
Y C CGK F + + L+ H R H GE+P
Sbjct: 13 YECSECGKAFIQKSTLSMHQRIHRGEKPSGP 43
Score = 56.4 bits (137), Expect = 1e-10
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQPYKC 793
Y C CGK F + + L+ H R H GE+P
Sbjct: 13 YECSECGKAFIQKSTLSMHQRIHRGEKPSGP 43
Score = 47.5 bits (114), Expect = 2e-07
Identities = 15/42 (35%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 243 HIRTHHVGARQHACQECGKTFATSSGLKQHTHIHSSVKPFRC 284
+ G R + C ECGK F S L H IH KP
Sbjct: 3 SGSSG-TGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGP 43
Score = 42.9 bits (102), Expect = 7e-06
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 271 QHTHIHSSVKPFRCEVCHKAYTQFSNLCRHKRMH 304
+ + + C C KA+ Q S L H+R+H
Sbjct: 2 SSGSSGTGERHYECSECGKAFIQKSTLSMHQRIH 35
Score = 34.8 bits (81), Expect = 0.005
Identities = 8/34 (23%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 78 HVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 111
E+ ++C C + F Q++ L H + H
Sbjct: 3 SGS-SGTGERHYECSECGKAFIQKSTLSMHQRIH 35
Score = 34.8 bits (81), Expect = 0.005
Identities = 8/34 (23%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 809 HVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 842
E+ ++C C + F Q++ L H + H
Sbjct: 3 SGS-SGTGERHYECSECGKAFIQKSTLSMHQRIH 35
Score = 29.8 bits (68), Expect = 0.29
Identities = 10/34 (29%), Positives = 12/34 (35%), Gaps = 3/34 (8%)
Query: 216 HQAQVH-GRK-FPCENCTKVFSDPSNLQRHIRTH 247
G + + C C K F S L H R H
Sbjct: 3 SG-SSGTGERHYECSECGKAFIQKSTLSMHQRIH 35
Score = 26.7 bits (60), Expect = 4.7
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 198 YRCESCSQTFCWRPHLNFHQ 217
Y C C + F + L+ HQ
Sbjct: 13 YECSECGKAFIQKSTLSMHQ 32
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 63.7 bits (156), Expect = 4e-13
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 49 RHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 91
+ TG + ++C C ++F+ S L H + IH EKP
Sbjct: 2 SSGSSGTGGKHFECTECGKAFTRKSTLSMHQK-IHTGEKPSGP 43
Score = 63.7 bits (156), Expect = 4e-13
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 780 RHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 822
+ TG + ++C C ++F+ S L H + IH EKP
Sbjct: 2 SSGSSGTGGKHFECTECGKAFTRKSTLSMHQK-IHTGEKPSGP 43
Score = 56.8 bits (138), Expect = 1e-10
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQPYKC 62
+ C CGK F R + L+ H + HTGE+P
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTGEKPSGP 43
Score = 56.8 bits (138), Expect = 1e-10
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQPYKC 793
+ C CGK F R + L+ H + HTGE+P
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTGEKPSGP 43
Score = 46.7 bits (112), Expect = 3e-07
Identities = 14/44 (31%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
Query: 242 RHIRTHHVGARQHACQECGKTFATSSGLKQHTHIHSSVKPFRCE 285
+ G + C ECGK F S L H IH+ KP
Sbjct: 2 SSGSSG-TGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPS 44
Score = 42.1 bits (100), Expect = 1e-05
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 271 QHTHIHSSVKPFRCEVCHKAYTQFSNLCRHKRMH 304
+ K F C C KA+T+ S L H+++H
Sbjct: 2 SSGSSGTGGKHFECTECGKAFTRKSTLSMHQKIH 35
Score = 35.2 bits (82), Expect = 0.004
Identities = 9/35 (25%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 77 RHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 111
K F+C C + F +++ L H K H
Sbjct: 2 SSGS-SGTGGKHFECTECGKAFTRKSTLSMHQKIH 35
Score = 35.2 bits (82), Expect = 0.004
Identities = 9/35 (25%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 808 RHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 842
K F+C C + F +++ L H K H
Sbjct: 2 SSGS-SGTGGKHFECTECGKAFTRKSTLSMHQKIH 35
Score = 30.2 bits (69), Expect = 0.24
Identities = 11/34 (32%), Positives = 13/34 (38%), Gaps = 3/34 (8%)
Query: 216 HQAQVH-GRK-FPCENCTKVFSDPSNLQRHIRTH 247
G K F C C K F+ S L H + H
Sbjct: 3 SG-SSGTGGKHFECTECGKAFTRKSTLSMHQKIH 35
Score = 25.9 bits (58), Expect = 6.8
Identities = 6/20 (30%), Positives = 10/20 (50%)
Query: 198 YRCESCSQTFCWRPHLNFHQ 217
+ C C + F + L+ HQ
Sbjct: 13 FECTECGKAFTRKSTLSMHQ 32
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 63.3 bits (155), Expect = 4e-13
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 49 RHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 91
+ +GE+P+KC C + F S+L H+R +H++EK
Sbjct: 2 SSGSSGSGERPFKCNECGKGFGRRSHLAGHLR-LHSREKSSGP 43
Score = 63.3 bits (155), Expect = 4e-13
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 780 RHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 822
+ +GE+P+KC C + F S+L H+R +H++EK
Sbjct: 2 SSGSSGSGERPFKCNECGKGFGRRSHLAGHLR-LHSREKSSGP 43
Score = 56.4 bits (137), Expect = 1e-10
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQPYKC 62
+ C CGK F R ++L HLR H+ E+
Sbjct: 13 FKCNECGKGFGRRSHLAGHLRLHSREKSSGP 43
Score = 56.4 bits (137), Expect = 1e-10
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQPYKC 793
+ C CGK F R ++L HLR H+ E+
Sbjct: 13 FKCNECGKGFGRRSHLAGHLRLHSREKSSGP 43
Score = 44.8 bits (107), Expect = 1e-06
Identities = 14/43 (32%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Query: 242 RHIRTHHVGARQHACQECGKTFATSSGLKQHTHIHSSVKPFRC 284
+ G R C ECGK F S L H +HS K
Sbjct: 2 SSGSSG-SGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGP 43
Score = 42.1 bits (100), Expect = 1e-05
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 272 HTHIHSSVKPFRCEVCHKAYTQFSNLCRHKRMH 304
S +PF+C C K + + S+L H R+H
Sbjct: 3 SGSSGSGERPFKCNECGKGFGRRSHLAGHLRLH 35
Score = 37.9 bits (89), Expect = 4e-04
Identities = 12/32 (37%), Positives = 21/32 (65%)
Query: 80 RNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 111
+ + E+PFKC C + FG++++L HL+ H
Sbjct: 4 GSSGSGERPFKCNECGKGFGRRSHLAGHLRLH 35
Score = 37.9 bits (89), Expect = 4e-04
Identities = 12/32 (37%), Positives = 21/32 (65%)
Query: 811 RNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 842
+ + E+PFKC C + FG++++L HL+ H
Sbjct: 4 GSSGSGERPFKCNECGKGFGRRSHLAGHLRLH 35
Score = 29.8 bits (68), Expect = 0.31
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 225 FPCENCTKVFSDPSNLQRHIRTH 247
F C C K F S+L H+R H
Sbjct: 13 FKCNECGKGFGRRSHLAGHLRLH 35
Score = 28.3 bits (64), Expect = 1.0
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 198 YRCESCSQTFCWRPHLNFHQ 217
++C C + F R HL H
Sbjct: 13 FKCNECGKGFGRRSHLAGHL 32
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 63.3 bits (155), Expect = 4e-13
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 50 HLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 91
+ GE+PY+C C +SFS S L +H H +EKP
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYRLTQHWI-THTREKPSGP 43
Score = 63.3 bits (155), Expect = 4e-13
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 781 HLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 822
+ GE+PY+C C +SFS S L +H H +EKP
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYRLTQHWI-THTREKPSGP 43
Score = 57.9 bits (141), Expect = 3e-11
Identities = 15/31 (48%), Positives = 17/31 (54%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQPYKC 62
Y C CGK F S LT+H THT E+P
Sbjct: 13 YQCSECGKSFSGSYRLTQHWITHTREKPSGP 43
Score = 57.9 bits (141), Expect = 3e-11
Identities = 15/31 (48%), Positives = 17/31 (54%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQPYKC 793
Y C CGK F S LT+H THT E+P
Sbjct: 13 YQCSECGKSFSGSYRLTQHWITHTREKPSGP 43
Score = 44.8 bits (107), Expect = 2e-06
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 243 HIRTHHVGARQHACQECGKTFATSSGLKQHTHIHSSVKPFRC 284
+ G + + C ECGK+F+ S L QH H+ KP
Sbjct: 3 SGSSGE-GEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGP 43
Score = 42.1 bits (100), Expect = 1e-05
Identities = 8/34 (23%), Positives = 14/34 (41%)
Query: 271 QHTHIHSSVKPFRCEVCHKAYTQFSNLCRHKRMH 304
KP++C C K+++ L +H H
Sbjct: 2 SSGSSGEGEKPYQCSECGKSFSGSYRLTQHWITH 35
Score = 35.2 bits (82), Expect = 0.003
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 80 RNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 111
+ EKP++C C + F L +H H
Sbjct: 4 GSSGEGEKPYQCSECGKSFSGSYRLTQHWITH 35
Score = 35.2 bits (82), Expect = 0.003
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 811 RNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 842
+ EKP++C C + F L +H H
Sbjct: 4 GSSGEGEKPYQCSECGKSFSGSYRLTQHWITH 35
Score = 31.0 bits (71), Expect = 0.13
Identities = 11/33 (33%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 216 HQAQVHGRK-FPCENCTKVFSDPSNLQRHIRTH 247
+ G K + C C K FS L +H TH
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYRLTQHWITH 35
Score = 26.7 bits (60), Expect = 4.5
Identities = 6/20 (30%), Positives = 9/20 (45%)
Query: 198 YRCESCSQTFCWRPHLNFHQ 217
Y+C C ++F L H
Sbjct: 13 YQCSECGKSFSGSYRLTQHW 32
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 63.3 bits (155), Expect = 4e-13
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 49 RHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 91
+ GE+ ++C C + F +SN +H R IH EKP
Sbjct: 2 SSGSSGHGERGHRCSDCGKFFLQASNFIQHRR-IHTGEKPSGP 43
Score = 63.3 bits (155), Expect = 4e-13
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 780 RHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 822
+ GE+ ++C C + F +SN +H R IH EKP
Sbjct: 2 SSGSSGHGERGHRCSDCGKFFLQASNFIQHRR-IHTGEKPSGP 43
Score = 54.5 bits (132), Expect = 5e-10
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQPYKC 62
+ C CGK F +++N +H R HTGE+P
Sbjct: 13 HRCSDCGKFFLQASNFIQHRRIHTGEKPSGP 43
Score = 54.5 bits (132), Expect = 5e-10
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQPYKC 793
+ C CGK F +++N +H R HTGE+P
Sbjct: 13 HRCSDCGKFFLQASNFIQHRRIHTGEKPSGP 43
Score = 46.4 bits (111), Expect = 5e-07
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 242 RHIRTHHVGARQHACQECGKTFATSSGLKQHTHIHSSVKPFRC 284
+ H G R H C +CGK F +S QH IH+ KP
Sbjct: 2 SSGSSGH-GERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGP 43
Score = 44.8 bits (107), Expect = 1e-06
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 271 QHTHIHSSVKPFRCEVCHKAYTQFSNLCRHKRMH 304
+ RC C K + Q SN +H+R+H
Sbjct: 2 SSGSSGHGERGHRCSDCGKFFLQASNFIQHRRIH 35
Score = 38.3 bits (90), Expect = 3e-04
Identities = 8/32 (25%), Positives = 16/32 (50%)
Query: 80 RNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 111
+ + E+ +C C + F Q +N +H + H
Sbjct: 4 GSSGHGERGHRCSDCGKFFLQASNFIQHRRIH 35
Score = 38.3 bits (90), Expect = 3e-04
Identities = 8/32 (25%), Positives = 16/32 (50%)
Query: 811 RNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 842
+ + E+ +C C + F Q +N +H + H
Sbjct: 4 GSSGHGERGHRCSDCGKFFLQASNFIQHRRIH 35
Score = 31.7 bits (73), Expect = 0.069
Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 216 HQAQVHGRK-FPCENCTKVFSDPSNLQRHIRTH 247
+ HG + C +C K F SN +H R H
Sbjct: 3 SGSSGHGERGHRCSDCGKFFLQASNFIQHRRIH 35
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 64.8 bits (157), Expect = 1e-12
Identities = 17/90 (18%), Positives = 27/90 (30%), Gaps = 6/90 (6%)
Query: 27 TTKDRYACKYCGKVFPRSANLTRHLR-----THTGEQPYKCKYCERSFSISSNLQRHVRN 81
T ++ CK C + LT H+ + S +L
Sbjct: 15 TGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGK 74
Query: 82 IHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 111
+ +K KC C F +L H+ K
Sbjct: 75 -EDAQKVLKCMYCGHSFESLQDLSVHMIKT 103
Score = 64.8 bits (157), Expect = 1e-12
Identities = 17/90 (18%), Positives = 27/90 (30%), Gaps = 6/90 (6%)
Query: 758 TTKDRYACKYCGKVFPRSANLTRHLR-----THTGEQPYKCKYCERSFSISSNLQRHVRN 812
T ++ CK C + LT H+ + S +L
Sbjct: 15 TGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGK 74
Query: 813 IHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 842
+ +K KC C F +L H+ K
Sbjct: 75 -EDAQKVLKCMYCGHSFESLQDLSVHMIKT 103
Score = 56.3 bits (135), Expect = 9e-10
Identities = 20/99 (20%), Positives = 34/99 (34%), Gaps = 5/99 (5%)
Query: 235 SDPSNLQRHIRTHHVGARQHACQECGKTFATSSGLKQHTHI--HSSVKPFRCEVCHKAYT 292
S S+ + + GA + C++C + T L H + H + +
Sbjct: 2 SSGSSGKLYGSIFT-GASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRW 60
Query: 293 QFSNLCRHKRMHANCRMQ--IKCVKCDQSFSTVTSLSKH 329
M Q +KC+ C SF ++ LS H
Sbjct: 61 SKPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVH 99
Score = 54.8 bits (131), Expect = 3e-09
Identities = 18/100 (18%), Positives = 32/100 (32%), Gaps = 7/100 (7%)
Query: 212 HLNFHQAQVHG-RKFPCENCTKVFSDPSNLQRHIR-THHVGARQHACQECGKTFATSSG- 268
+ + G KF C++C+ + L H+ T H H +
Sbjct: 6 SGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRK 65
Query: 269 --LKQHTHIHSSVKPFRCEVCHKAYTQFSNLCRH--KRMH 304
L + + K +C C ++ +L H K H
Sbjct: 66 RSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKH 105
Score = 47.5 bits (112), Expect = 1e-06
Identities = 12/66 (18%), Positives = 21/66 (31%), Gaps = 1/66 (1%)
Query: 26 KTTKDRYACKYCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRH-VRNIHN 84
+ PR +L ++ KC YC SF +L H ++ H
Sbjct: 47 DDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKHY 106
Query: 85 KEKPFK 90
++
Sbjct: 107 QKVSGP 112
Score = 47.5 bits (112), Expect = 1e-06
Identities = 12/66 (18%), Positives = 21/66 (31%), Gaps = 1/66 (1%)
Query: 757 KTTKDRYACKYCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRH-VRNIHN 815
+ PR +L ++ KC YC SF +L H ++ H
Sbjct: 47 DDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKHY 106
Query: 816 KEKPFK 821
++
Sbjct: 107 QKVSGP 112
Score = 45.5 bits (107), Expect = 5e-06
Identities = 14/80 (17%), Positives = 26/80 (32%), Gaps = 2/80 (2%)
Query: 264 ATSSGLKQHTHIHSSVKPFRCEVCHKAYTQFSNLCRHKRMHANCRMQIKCVKCDQSFSTV 323
++ S K + I + FRC+ C AY L H M+ + + D +
Sbjct: 2 SSGSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVH--MNETGHYRDDNHETDNNNPKR 59
Query: 324 TSLSKHKRFCDSTTPGTTPS 343
S + + +
Sbjct: 60 WSKPRKRSLLEMEGKEDAQK 79
Score = 38.6 bits (89), Expect = 0.001
Identities = 11/69 (15%), Positives = 21/69 (30%), Gaps = 2/69 (2%)
Query: 726 HLLRSQISPYANKPFQEILTSQNNAVNGSSSKTTKDRYACKYCGKVFPRSANLTRHL--R 783
H N P + + + + + + C YCG F +L+ H+
Sbjct: 44 HYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKT 103
Query: 784 THTGEQPYK 792
H +
Sbjct: 104 KHYQKVSGP 112
Score = 36.3 bits (83), Expect = 0.007
Identities = 10/62 (16%), Positives = 20/62 (32%), Gaps = 2/62 (3%)
Query: 2 SPYANKPFQEILTSQNNAVNGSSSKTTKDRYACKYCGKVFPRSANLTRHL--RTHTGEQP 59
N P + + + + + + C YCG F +L+ H+ H +
Sbjct: 51 ETDNNNPKRWSKPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKHYQKVS 110
Query: 60 YK 61
Sbjct: 111 GP 112
Score = 32.0 bits (72), Expect = 0.23
Identities = 15/72 (20%), Positives = 26/72 (36%), Gaps = 5/72 (6%)
Query: 182 ELEDHLITGHRYPPDQYRCESC---SQTFCWRPHLNFHQAQVHGRK-FPCENCTKVFSDP 237
EL H+ Y D + ++ + + L + + +K C C F
Sbjct: 34 ELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQKVLKCMYCGHSFESL 93
Query: 238 SNLQRH-IRTHH 248
+L H I+T H
Sbjct: 94 QDLSVHMIKTKH 105
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 61.8 bits (151), Expect = 1e-12
Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 49 RHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 91
+ TGE+P KC C ++F S L H R H +K
Sbjct: 2 SSGSSGTGEKPCKCTECGKAFCWKSQLIMHQR-THVDDKHSGP 43
Score = 61.8 bits (151), Expect = 1e-12
Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 780 RHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 822
+ TGE+P KC C ++F S L H R H +K
Sbjct: 2 SSGSSGTGEKPCKCTECGKAFCWKSQLIMHQR-THVDDKHSGP 43
Score = 55.6 bits (135), Expect = 2e-10
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQPYKC 62
C CGK F + L H RTH ++
Sbjct: 13 CKCTECGKAFCWKSQLIMHQRTHVDDKHSGP 43
Score = 55.6 bits (135), Expect = 2e-10
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQPYKC 793
C CGK F + L H RTH ++
Sbjct: 13 CKCTECGKAFCWKSQLIMHQRTHVDDKHSGP 43
Score = 44.9 bits (107), Expect = 1e-06
Identities = 12/43 (27%), Positives = 14/43 (32%), Gaps = 1/43 (2%)
Query: 242 RHIRTHHVGARQHACQECGKTFATSSGLKQHTHIHSSVKPFRC 284
+ G + C ECGK F S L H H K
Sbjct: 2 SSGSSG-TGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGP 43
Score = 39.8 bits (94), Expect = 9e-05
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 272 HTHIHSSVKPFRCEVCHKAYTQFSNLCRHKRMH 304
+ KP +C C KA+ S L H+R H
Sbjct: 3 SGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTH 35
Score = 35.2 bits (82), Expect = 0.004
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 80 RNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 111
+ EKP KC C + F ++ L H + H
Sbjct: 4 GSSGTGEKPCKCTECGKAFCWKSQLIMHQRTH 35
Score = 35.2 bits (82), Expect = 0.004
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 811 RNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 842
+ EKP KC C + F ++ L H + H
Sbjct: 4 GSSGTGEKPCKCTECGKAFCWKSQLIMHQRTH 35
Score = 31.0 bits (71), Expect = 0.12
Identities = 10/23 (43%), Positives = 10/23 (43%)
Query: 225 FPCENCTKVFSDPSNLQRHIRTH 247
C C K F S L H RTH
Sbjct: 13 CKCTECGKAFCWKSQLIMHQRTH 35
Score = 29.8 bits (68), Expect = 0.34
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 198 YRCESCSQTFCWRPHLNFHQ 217
+C C + FCW+ L HQ
Sbjct: 13 CKCTECGKAFCWKSQLIMHQ 32
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 61.4 bits (150), Expect = 2e-12
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 49 RHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 91
+ + + ++C C R F++ S+L +H R IH EKP
Sbjct: 2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQR-IHTGEKPSGP 43
Score = 61.4 bits (150), Expect = 2e-12
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 780 RHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 822
+ + + ++C C R F++ S+L +H R IH EKP
Sbjct: 2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQR-IHTGEKPSGP 43
Score = 52.2 bits (126), Expect = 3e-09
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQPYKC 62
+ C CG+ F ++L +H R HTGE+P
Sbjct: 13 HQCHECGRGFTLKSHLNQHQRIHTGEKPSGP 43
Score = 52.2 bits (126), Expect = 3e-09
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQPYKC 793
+ C CG+ F ++L +H R HTGE+P
Sbjct: 13 HQCHECGRGFTLKSHLNQHQRIHTGEKPSGP 43
Score = 44.8 bits (107), Expect = 1e-06
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 271 QHTHIHSSVKPFRCEVCHKAYTQFSNLCRHKRMH 304
SS K +C C + +T S+L +H+R+H
Sbjct: 2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIH 35
Score = 42.9 bits (102), Expect = 6e-06
Identities = 14/37 (37%), Positives = 17/37 (45%)
Query: 248 HVGARQHACQECGKTFATSSGLKQHTHIHSSVKPFRC 284
+ H C ECG+ F S L QH IH+ KP
Sbjct: 7 GSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGP 43
Score = 37.1 bits (87), Expect = 7e-04
Identities = 8/30 (26%), Positives = 16/30 (53%)
Query: 82 IHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 111
+ K +C C R F +++L++H + H
Sbjct: 6 SGSSTKSHQCHECGRGFTLKSHLNQHQRIH 35
Score = 37.1 bits (87), Expect = 7e-04
Identities = 8/30 (26%), Positives = 16/30 (53%)
Query: 813 IHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 842
+ K +C C R F +++L++H + H
Sbjct: 6 SGSSTKSHQCHECGRGFTLKSHLNQHQRIH 35
Score = 29.4 bits (67), Expect = 0.50
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 198 YRCESCSQTFCWRPHLNFHQ 217
++C C + F + HLN HQ
Sbjct: 13 HQCHECGRGFTLKSHLNQHQ 32
Score = 29.1 bits (66), Expect = 0.56
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 227 CENCTKVFSDPSNLQRHIRTH 247
C C + F+ S+L +H R H
Sbjct: 15 CHECGRGFTLKSHLNQHQRIH 35
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 42
Score = 60.3 bits (147), Expect = 5e-12
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 50 HLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPF 89
+ GE+PY+C C ++FS +L H+R +H P
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIR-VHTGSGPS 40
Score = 60.3 bits (147), Expect = 5e-12
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 781 HLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPF 820
+ GE+PY+C C ++FS +L H+R +H P
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIR-VHTGSGPS 40
Score = 50.6 bits (122), Expect = 1e-08
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQPY 60
Y C CGK F + +L H+R HTG P
Sbjct: 12 YRCDQCGKAFSQKGSLIVHIRVHTGSGPS 40
Score = 50.6 bits (122), Expect = 1e-08
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQPY 791
Y C CGK F + +L H+R HTG P
Sbjct: 12 YRCDQCGKAFSQKGSLIVHIRVHTGSGPS 40
Score = 43.7 bits (104), Expect = 4e-06
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 272 HTHIHSSVKPFRCEVCHKAYTQFSNLCRHKRMH 304
+ KP+RC+ C KA++Q +L H R+H
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVH 34
Score = 43.3 bits (103), Expect = 5e-06
Identities = 10/40 (25%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Query: 243 HIRTHHVGARQHACQECGKTFATSSGLKQHTHIHSSVKPF 282
+ G + + C +CGK F+ L H +H+ P
Sbjct: 2 SSGSS-GGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPS 40
Score = 36.8 bits (86), Expect = 0.001
Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 78 HVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 111
EKP++C C + F Q+ +L H++ H
Sbjct: 2 SSG-SSGGEKPYRCDQCGKAFSQKGSLIVHIRVH 34
Score = 36.8 bits (86), Expect = 0.001
Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 809 HVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 842
EKP++C C + F Q+ +L H++ H
Sbjct: 2 SSG-SSGGEKPYRCDQCGKAFSQKGSLIVHIRVH 34
Score = 32.5 bits (75), Expect = 0.032
Identities = 12/34 (35%), Positives = 15/34 (44%), Gaps = 3/34 (8%)
Query: 216 HQAQVH-GRK-FPCENCTKVFSDPSNLQRHIRTH 247
G K + C+ C K FS +L HIR H
Sbjct: 2 SS-GSSGGEKPYRCDQCGKAFSQKGSLIVHIRVH 34
Score = 26.0 bits (58), Expect = 6.9
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 198 YRCESCSQTFCWRPHLNFHQ 217
YRC+ C + F + L H
Sbjct: 12 YRCDQCGKAFSQKGSLIVHI 31
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 59.4 bits (145), Expect = 1e-11
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 50 HLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 91
+ TGE PY+C C + FS L H + H+ +
Sbjct: 3 SGSSGTGENPYECCECGKVFSRKDQLVSHQK-THSGQSGPSS 43
Score = 59.4 bits (145), Expect = 1e-11
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 781 HLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 822
+ TGE PY+C C + FS L H + H+ +
Sbjct: 3 SGSSGTGENPYECCECGKVFSRKDQLVSHQK-THSGQSGPSS 43
Score = 55.2 bits (134), Expect = 3e-10
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQPYKC 62
Y C CGKVF R L H +TH+G+
Sbjct: 13 YECCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
Score = 55.2 bits (134), Expect = 3e-10
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQPYKC 793
Y C CGKVF R L H +TH+G+
Sbjct: 13 YECCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
Score = 44.4 bits (106), Expect = 2e-06
Identities = 11/37 (29%), Positives = 13/37 (35%)
Query: 248 HVGARQHACQECGKTFATSSGLKQHTHIHSSVKPFRC 284
G + C ECGK F+ L H HS
Sbjct: 7 GTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
Score = 39.0 bits (92), Expect = 2e-04
Identities = 7/34 (20%), Positives = 14/34 (41%)
Query: 271 QHTHIHSSVKPFRCEVCHKAYTQFSNLCRHKRMH 304
+ P+ C C K +++ L H++ H
Sbjct: 2 SSGSSGTGENPYECCECGKVFSRKDQLVSHQKTH 35
Score = 33.2 bits (77), Expect = 0.020
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 80 RNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 111
+ E P++C C + F ++ L H K H
Sbjct: 4 GSSGTGENPYECCECGKVFSRKDQLVSHQKTH 35
Score = 33.2 bits (77), Expect = 0.020
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 811 RNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 842
+ E P++C C + F ++ L H K H
Sbjct: 4 GSSGTGENPYECCECGKVFSRKDQLVSHQKTH 35
Score = 29.8 bits (68), Expect = 0.35
Identities = 10/21 (47%), Positives = 11/21 (52%)
Query: 227 CENCTKVFSDPSNLQRHIRTH 247
C C KVFS L H +TH
Sbjct: 15 CCECGKVFSRKDQLVSHQKTH 35
Score = 26.7 bits (60), Expect = 4.5
Identities = 7/20 (35%), Positives = 9/20 (45%)
Query: 198 YRCESCSQTFCWRPHLNFHQ 217
Y C C + F + L HQ
Sbjct: 13 YECCECGKVFSRKDQLVSHQ 32
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Length = 42
Score = 59.1 bits (144), Expect = 1e-11
Identities = 12/40 (30%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Query: 52 RTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 91
+GE PY+C C ++F+ L H R H E
Sbjct: 3 SGSSGENPYECSECGKAFNRKDQLISHQR-THAGESGPSS 41
Score = 59.1 bits (144), Expect = 1e-11
Identities = 12/40 (30%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Query: 783 RTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 822
+GE PY+C C ++F+ L H R H E
Sbjct: 3 SGSSGENPYECSECGKAFNRKDQLISHQR-THAGESGPSS 41
Score = 57.1 bits (139), Expect = 7e-11
Identities = 14/31 (45%), Positives = 14/31 (45%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQPYKC 62
Y C CGK F R L H RTH GE
Sbjct: 11 YECSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 57.1 bits (139), Expect = 7e-11
Identities = 14/31 (45%), Positives = 14/31 (45%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQPYKC 793
Y C CGK F R L H RTH GE
Sbjct: 11 YECSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 45.6 bits (109), Expect = 6e-07
Identities = 10/37 (27%), Positives = 12/37 (32%)
Query: 248 HVGARQHACQECGKTFATSSGLKQHTHIHSSVKPFRC 284
G + C ECGK F L H H+
Sbjct: 5 SSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 37.1 bits (87), Expect = 8e-04
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 275 IHSSVKPFRCEVCHKAYTQFSNLCRHKRMH 304
S P+ C C KA+ + L H+R H
Sbjct: 4 GSSGENPYECSECGKAFNRKDQLISHQRTH 33
Score = 34.4 bits (80), Expect = 0.006
Identities = 8/32 (25%), Positives = 16/32 (50%)
Query: 80 RNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 111
+ + E P++C C + F ++ L H + H
Sbjct: 2 SSGSSGENPYECSECGKAFNRKDQLISHQRTH 33
Score = 34.4 bits (80), Expect = 0.006
Identities = 8/32 (25%), Positives = 16/32 (50%)
Query: 811 RNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 842
+ + E P++C C + F ++ L H + H
Sbjct: 2 SSGSSGENPYECSECGKAFNRKDQLISHQRTH 33
Score = 29.4 bits (67), Expect = 0.35
Identities = 9/21 (42%), Positives = 10/21 (47%)
Query: 227 CENCTKVFSDPSNLQRHIRTH 247
C C K F+ L H RTH
Sbjct: 13 CSECGKAFNRKDQLISHQRTH 33
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 61.9 bits (149), Expect = 2e-11
Identities = 20/109 (18%), Positives = 44/109 (40%), Gaps = 11/109 (10%)
Query: 716 SLGVNRTPYEHLLRSQISPYANKPFQEILTS---------QNNAVNGSSSKTTKDRYACK 766
+ ++ T E Q++P + + I+ + +++ + + ++ C
Sbjct: 19 GIFIHVTLEELKRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLLASKAISQFVCP 78
Query: 767 YCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHN 815
C F S +L +H+R E C C++ F+ + + HV HN
Sbjct: 79 LCLMPFSSSVSLKQHIRYT--EHTKVCPVCKKEFTSTDSALDHVCKKHN 125
Score = 61.9 bits (149), Expect = 2e-11
Identities = 16/72 (22%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
Query: 13 LTSQNNAVNGSSSKTTKDRYACKYCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSIS 72
L +++ + + ++ C C F S +L +H+R E C C++ F+ +
Sbjct: 56 LLDESSYLYRLLASKAISQFVCPLCLMPFSSSVSLKQHIRYT--EHTKVCPVCKKEFTST 113
Query: 73 SNLQRHVRNIHN 84
+ HV HN
Sbjct: 114 DSALDHVCKKHN 125
Score = 56.5 bits (135), Expect = 9e-10
Identities = 16/71 (22%), Positives = 27/71 (38%), Gaps = 3/71 (4%)
Query: 41 FPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQ 100
++ L + C C FS S +L++H+R E CP+C + F
Sbjct: 56 LLDESSYLYRLLASKAISQFVCPLCLMPFSSSVSLKQHIRY---TEHTKVCPVCKKEFTS 112
Query: 101 QTNLDRHLKKH 111
+ H+ K
Sbjct: 113 TDSALDHVCKK 123
Score = 56.5 bits (135), Expect = 9e-10
Identities = 16/71 (22%), Positives = 27/71 (38%), Gaps = 3/71 (4%)
Query: 772 FPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQ 831
++ L + C C FS S +L++H+R E CP+C + F
Sbjct: 56 LLDESSYLYRLLASKAISQFVCPLCLMPFSSSVSLKQHIRY---TEHTKVCPVCKKEFTS 112
Query: 832 QTNLDRHLKKH 842
+ H+ K
Sbjct: 113 TDSALDHVCKK 123
Score = 53.4 bits (127), Expect = 1e-08
Identities = 21/97 (21%), Positives = 31/97 (31%), Gaps = 10/97 (10%)
Query: 183 LEDHLITGHRYPPDQYRCESCSQTFCWRPH-------LNFHQAQVHGRKFPCENCTKVFS 235
LE+ P + + +T P L A +F C C FS
Sbjct: 26 LEELKRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLLASKAISQFVCPLCLMPFS 85
Query: 236 DPSNLQRHIRTHHVGARQHACQECGKTFATSSGLKQH 272
+L++HIR C C K F ++ H
Sbjct: 86 SSVSLKQHIRYTE---HTKVCPVCKKEFTSTDSALDH 119
Score = 48.4 bits (114), Expect = 8e-07
Identities = 20/114 (17%), Positives = 34/114 (29%), Gaps = 9/114 (7%)
Query: 201 ESCSQTFCWRPHLNFHQAQVHGRKFPCENCTKV-----FSDPSNLQRHIRTHHVGARQHA 255
+ +HQ ++ + D S+ + ++
Sbjct: 18 KGIFIHVTLEELKRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLLASKAISQ-FV 76
Query: 256 CQECGKTFATSSGLKQHTHIHSSVKPFRCEVCHKAYTQFSNLCRH-KRMHANCR 308
C C F++S LKQH C VC K +T + H + H C
Sbjct: 77 CPLCLMPFSSSVSLKQHIRYTE--HTKVCPVCKKEFTSTDSALDHVCKKHNICV 128
Score = 41.8 bits (97), Expect = 2e-04
Identities = 11/55 (20%), Positives = 16/55 (29%), Gaps = 1/55 (1%)
Query: 198 YRCESCSQTFCWRPHLNFHQAQVHGRKFPCENCTKVFSDPSNLQRHIRTHHVGAR 252
+ C C F L H + C C K F+ + H+ H
Sbjct: 75 FVCPLCLMPFSSSVSLKQHI-RYTEHTKVCPVCKKEFTSTDSALDHVCKKHNICV 128
Score = 41.1 bits (95), Expect = 3e-04
Identities = 16/79 (20%), Positives = 25/79 (31%), Gaps = 2/79 (2%)
Query: 34 CKYCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKCPL 93
+ R LT + + + SS L R + F CPL
Sbjct: 22 IHVTLEELKRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLLA--SKAISQFVCPL 79
Query: 94 CDRCFGQQTNLDRHLKKHE 112
C F +L +H++ E
Sbjct: 80 CLMPFSSSVSLKQHIRYTE 98
Score = 41.1 bits (95), Expect = 3e-04
Identities = 16/79 (20%), Positives = 25/79 (31%), Gaps = 2/79 (2%)
Query: 765 CKYCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKCPL 824
+ R LT + + + SS L R + F CPL
Sbjct: 22 IHVTLEELKRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLLA--SKAISQFVCPL 79
Query: 825 CDRCFGQQTNLDRHLKKHE 843
C F +L +H++ E
Sbjct: 80 CLMPFSSSVSLKQHIRYTE 98
Score = 38.8 bits (89), Expect = 0.002
Identities = 12/67 (17%), Positives = 25/67 (37%), Gaps = 3/67 (4%)
Query: 263 FATSSGLKQHTHIHSSVKPFRCEVCHKAYTQFSNLCRHKRMHANCRMQIKCVKCDQSFST 322
S ++ F C +C ++ +L +H R + ++ C C + F++
Sbjct: 56 LLDESSYLYRLLASKAISQFVCPLCLMPFSSSVSLKQHIRYTEHTKV---CPVCKKEFTS 112
Query: 323 VTSLSKH 329
S H
Sbjct: 113 TDSALDH 119
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 58.7 bits (143), Expect = 2e-11
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 52 RTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 91
+GE+P+ C CE++FS S L H + H +EKP
Sbjct: 3 SGSSGEKPFGCSCCEKAFSSKSYLLVHQQ-THAEEKPSGP 41
Score = 58.7 bits (143), Expect = 2e-11
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 783 RTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 822
+GE+P+ C CE++FS S L H + H +EKP
Sbjct: 3 SGSSGEKPFGCSCCEKAFSSKSYLLVHQQ-THAEEKPSGP 41
Score = 56.4 bits (137), Expect = 1e-10
Identities = 13/41 (31%), Positives = 19/41 (46%)
Query: 22 GSSSKTTKDRYACKYCGKVFPRSANLTRHLRTHTGEQPYKC 62
GSS + + + C C K F + L H +TH E+P
Sbjct: 1 GSSGSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGP 41
Score = 56.4 bits (137), Expect = 1e-10
Identities = 13/41 (31%), Positives = 19/41 (46%)
Query: 753 GSSSKTTKDRYACKYCGKVFPRSANLTRHLRTHTGEQPYKC 793
GSS + + + C C K F + L H +TH E+P
Sbjct: 1 GSSGSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGP 41
Score = 44.4 bits (106), Expect = 2e-06
Identities = 11/37 (29%), Positives = 15/37 (40%)
Query: 248 HVGARQHACQECGKTFATSSGLKQHTHIHSSVKPFRC 284
G + C C K F++ S L H H+ KP
Sbjct: 5 SSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGP 41
Score = 37.9 bits (89), Expect = 4e-04
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 275 IHSSVKPFRCEVCHKAYTQFSNLCRHKRMH 304
S KPF C C KA++ S L H++ H
Sbjct: 4 GSSGEKPFGCSCCEKAFSSKSYLLVHQQTH 33
Score = 36.4 bits (85), Expect = 0.002
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 82 IHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 111
+ EKPF C C++ F ++ L H + H
Sbjct: 4 GSSGEKPFGCSCCEKAFSSKSYLLVHQQTH 33
Score = 36.4 bits (85), Expect = 0.002
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 813 IHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 842
+ EKPF C C++ F ++ L H + H
Sbjct: 4 GSSGEKPFGCSCCEKAFSSKSYLLVHQQTH 33
Score = 30.2 bits (69), Expect = 0.22
Identities = 11/23 (47%), Positives = 12/23 (52%)
Query: 225 FPCENCTKVFSDPSNLQRHIRTH 247
F C C K FS S L H +TH
Sbjct: 11 FGCSCCEKAFSSKSYLLVHQQTH 33
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 58.0 bits (141), Expect = 4e-11
Identities = 10/42 (23%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 50 HLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 91
+ T + Y C C ++F+ +L RH + IH ++
Sbjct: 3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQK-IHTRKSGPSS 43
Score = 58.0 bits (141), Expect = 4e-11
Identities = 10/42 (23%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 781 HLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 822
+ T + Y C C ++F+ +L RH + IH ++
Sbjct: 3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQK-IHTRKSGPSS 43
Score = 51.8 bits (125), Expect = 5e-09
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQPYKC 62
Y C CGK F R +LTRH + HT +
Sbjct: 13 YNCNECGKAFTRIFHLTRHQKIHTRKSGPSS 43
Score = 51.8 bits (125), Expect = 5e-09
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQPYKC 793
Y C CGK F R +LTRH + HT +
Sbjct: 13 YNCNECGKAFTRIFHLTRHQKIHTRKSGPSS 43
Score = 44.9 bits (107), Expect = 1e-06
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 271 QHTHIHSSVKPFRCEVCHKAYTQFSNLCRHKRMH 304
+ K + C C KA+T+ +L RH+++H
Sbjct: 2 SSGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIH 35
Score = 39.9 bits (94), Expect = 8e-05
Identities = 10/42 (23%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 243 HIRTHHVGARQHACQECGKTFATSSGLKQHTHIHSSVKPFRC 284
+ ++ + C ECGK F L +H IH+
Sbjct: 3 SGSSG-TDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSS 43
Score = 37.9 bits (89), Expect = 4e-04
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 82 IHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 111
K + C C + F + +L RH K H
Sbjct: 6 SGTDSKSYNCNECGKAFTRIFHLTRHQKIH 35
Score = 37.9 bits (89), Expect = 4e-04
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 813 IHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 842
K + C C + F + +L RH K H
Sbjct: 6 SGTDSKSYNCNECGKAFTRIFHLTRHQKIH 35
Score = 29.1 bits (66), Expect = 0.51
Identities = 9/34 (26%), Positives = 13/34 (38%), Gaps = 3/34 (8%)
Query: 216 HQAQVH-GRK-FPCENCTKVFSDPSNLQRHIRTH 247
K + C C K F+ +L RH + H
Sbjct: 3 SG-SSGTDSKSYNCNECGKAFTRIFHLTRHQKIH 35
Score = 29.1 bits (66), Expect = 0.58
Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 198 YRCESCSQTFCWRPHLNFHQAQVHGRKFPCEN 229
Y C C + F HL HQ ++H RK +
Sbjct: 13 YNCNECGKAFTRIFHLTRHQ-KIHTRKSGPSS 43
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 58.1 bits (140), Expect = 7e-11
Identities = 15/76 (19%), Positives = 26/76 (34%), Gaps = 8/76 (10%)
Query: 43 RSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQT 102
S + + + H G++ KC C F S ++ K C C + Q+
Sbjct: 2 SSGSSGKRQKIHLGDRSQKCSKCGIIFIRRST--------LSRRKTPMCEKCRKDSCQEA 53
Query: 103 NLDRHLKKHEADDGSG 118
L++ SG
Sbjct: 54 ALNKDEGNESGKKTSG 69
Score = 58.1 bits (140), Expect = 7e-11
Identities = 15/76 (19%), Positives = 26/76 (34%), Gaps = 8/76 (10%)
Query: 774 RSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQT 833
S + + + H G++ KC C F S ++ K C C + Q+
Sbjct: 2 SSGSSGKRQKIHLGDRSQKCSKCGIIFIRRST--------LSRRKTPMCEKCRKDSCQEA 53
Query: 834 NLDRHLKKHEADDGSG 849
L++ SG
Sbjct: 54 ALNKDEGNESGKKTSG 69
Score = 54.3 bits (130), Expect = 1e-09
Identities = 18/84 (21%), Positives = 29/84 (34%), Gaps = 12/84 (14%)
Query: 264 ATSSGLKQHTHIHSSVKPFRCEVCHKAYTQFSNLCRHKRMHANCRMQIKCVKCDQSFSTV 323
+S + IH + +C C + + S L R K C KC +
Sbjct: 1 GSSGSSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSRRKTP--------MCEKCRKDSCQE 52
Query: 324 TSLSKHKRFCDSTTPGTTPSGQNS 347
+L+K + G SG +S
Sbjct: 53 AALNKDEG----NESGKKTSGPSS 72
Score = 43.1 bits (101), Expect = 1e-05
Identities = 11/58 (18%), Positives = 21/58 (36%), Gaps = 8/58 (13%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPF 89
C CG +F R + L+R + C+ C + + L + + +K
Sbjct: 19 QKCSKCGIIFIRRSTLSRR-------KTPMCEKCRKDSCQEAALNKDEG-NESGKKTS 68
Score = 43.1 bits (101), Expect = 1e-05
Identities = 11/58 (18%), Positives = 21/58 (36%), Gaps = 8/58 (13%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPF 820
C CG +F R + L+R + C+ C + + L + + +K
Sbjct: 19 QKCSKCGIIFIRRSTLSRR-------KTPMCEKCRKDSCQEAALNKDEG-NESGKKTS 68
Score = 42.7 bits (100), Expect = 2e-05
Identities = 7/42 (16%), Positives = 16/42 (38%)
Query: 19 AVNGSSSKTTKDRYACKYCGKVFPRSANLTRHLRTHTGEQPY 60
S+ + + C+ C K + A L + +G++
Sbjct: 27 IFIRRSTLSRRKTPMCEKCRKDSCQEAALNKDEGNESGKKTS 68
Score = 42.7 bits (100), Expect = 2e-05
Identities = 7/42 (16%), Positives = 16/42 (38%)
Query: 750 AVNGSSSKTTKDRYACKYCGKVFPRSANLTRHLRTHTGEQPY 791
S+ + + C+ C K + A L + +G++
Sbjct: 27 IFIRRSTLSRRKTPMCEKCRKDSCQEAALNKDEGNESGKKTS 68
Score = 40.0 bits (93), Expect = 1e-04
Identities = 14/72 (19%), Positives = 21/72 (29%), Gaps = 9/72 (12%)
Query: 212 HLNFHQAQVHGRK-FPCENCTKVFSDPSNLQRHIRTHHVGARQHACQECGKTFATSSGLK 270
Q G + C C +F S L R + C++C K + L
Sbjct: 5 SSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSRR--------KTPMCEKCRKDSCQEAALN 56
Query: 271 QHTHIHSSVKPF 282
+ S K
Sbjct: 57 KDEGNESGKKTS 68
Score = 34.3 bits (78), Expect = 0.015
Identities = 10/50 (20%), Positives = 15/50 (30%), Gaps = 6/50 (12%)
Query: 198 YRCESCSQTFCWRPHLNFHQAQVHGRKFPCENCTKVFSDPSNLQRHIRTH 247
+C C F R L+ + CE C K + L +
Sbjct: 19 QKCSKCGIIFIRRSTLSRR------KTPMCEKCRKDSCQEAALNKDEGNE 62
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 56.8 bits (138), Expect = 1e-10
Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 50 HLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 91
+ +GE+ + C C ++F S L+ H R +H EK
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQR-VHMGEKCSGP 43
Score = 56.8 bits (138), Expect = 1e-10
Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 781 HLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 822
+ +GE+ + C C ++F S L+ H R +H EK
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQR-VHMGEKCSGP 43
Score = 49.5 bits (119), Expect = 3e-08
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 22 GSSSKT-TKDR-YACKYCGKVFPRSANLTRHLRTHTGEQPYKC 62
GSS + + ++ + C CGK F + L H R H GE+
Sbjct: 1 GSSGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGP 43
Score = 49.5 bits (119), Expect = 3e-08
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 753 GSSSKT-TKDR-YACKYCGKVFPRSANLTRHLRTHTGEQPYKC 793
GSS + + ++ + C CGK F + L H R H GE+
Sbjct: 1 GSSGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGP 43
Score = 45.3 bits (108), Expect = 1e-06
Identities = 13/38 (34%), Positives = 16/38 (42%)
Query: 248 HVGARQHACQECGKTFATSSGLKQHTHIHSSVKPFRCE 285
G + H C ECGK F S L+ H +H K
Sbjct: 7 GSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGPS 44
Score = 41.8 bits (99), Expect = 2e-05
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 272 HTHIHSSVKPFRCEVCHKAYTQFSNLCRHKRMH 304
S K C+ C K + S L H+R+H
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVH 35
Score = 33.3 bits (77), Expect = 0.016
Identities = 8/30 (26%), Positives = 12/30 (40%)
Query: 82 IHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 111
+ EK C C + F + L H + H
Sbjct: 6 SGSGEKSHTCDECGKNFCYISALRIHQRVH 35
Score = 33.3 bits (77), Expect = 0.016
Identities = 8/30 (26%), Positives = 12/30 (40%)
Query: 813 IHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 842
+ EK C C + F + L H + H
Sbjct: 6 SGSGEKSHTCDECGKNFCYISALRIHQRVH 35
Score = 30.3 bits (69), Expect = 0.27
Identities = 11/34 (32%), Positives = 13/34 (38%), Gaps = 3/34 (8%)
Query: 216 HQAQVH-GRK-FPCENCTKVFSDPSNLQRHIRTH 247
G K C+ C K F S L+ H R H
Sbjct: 3 SG-SSGSGEKSHTCDECGKNFCYISALRIHQRVH 35
Score = 29.1 bits (66), Expect = 0.64
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 198 YRCESCSQTFCWRPHLNFHQ 217
+ C+ C + FC+ L HQ
Sbjct: 13 HTCDECGKNFCYISALRIHQ 32
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 41
Score = 54.1 bits (131), Expect = 7e-10
Identities = 17/39 (43%), Positives = 22/39 (56%)
Query: 22 GSSSKTTKDRYACKYCGKVFPRSANLTRHLRTHTGEQPY 60
GSS + + Y C+ CGK F + +LT H R HTG P
Sbjct: 1 GSSGSSGQRVYECQECGKSFRQKGSLTLHERIHTGSGPS 39
Score = 54.1 bits (131), Expect = 7e-10
Identities = 17/39 (43%), Positives = 22/39 (56%)
Query: 753 GSSSKTTKDRYACKYCGKVFPRSANLTRHLRTHTGEQPY 791
GSS + + Y C+ CGK F + +LT H R HTG P
Sbjct: 1 GSSGSSGQRVYECQECGKSFRQKGSLTLHERIHTGSGPS 39
Score = 52.2 bits (126), Expect = 3e-09
Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 52 RTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPF 89
+G++ Y+C+ C +SF +L H R IH P
Sbjct: 3 SGSSGQRVYECQECGKSFRQKGSLTLHER-IHTGSGPS 39
Score = 52.2 bits (126), Expect = 3e-09
Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 783 RTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPF 820
+G++ Y+C+ C +SF +L H R IH P
Sbjct: 3 SGSSGQRVYECQECGKSFRQKGSLTLHER-IHTGSGPS 39
Score = 39.9 bits (94), Expect = 7e-05
Identities = 14/35 (40%), Positives = 17/35 (48%)
Query: 248 HVGARQHACQECGKTFATSSGLKQHTHIHSSVKPF 282
G R + CQECGK+F L H IH+ P
Sbjct: 5 SSGQRVYECQECGKSFRQKGSLTLHERIHTGSGPS 39
Score = 36.4 bits (85), Expect = 0.001
Identities = 8/25 (32%), Positives = 16/25 (64%)
Query: 280 KPFRCEVCHKAYTQFSNLCRHKRMH 304
+ + C+ C K++ Q +L H+R+H
Sbjct: 9 RVYECQECGKSFRQKGSLTLHERIH 33
Score = 31.8 bits (73), Expect = 0.060
Identities = 7/29 (24%), Positives = 16/29 (55%)
Query: 83 HNKEKPFKCPLCDRCFGQQTNLDRHLKKH 111
+ ++ ++C C + F Q+ +L H + H
Sbjct: 5 SSGQRVYECQECGKSFRQKGSLTLHERIH 33
Score = 31.8 bits (73), Expect = 0.060
Identities = 7/29 (24%), Positives = 16/29 (55%)
Query: 814 HNKEKPFKCPLCDRCFGQQTNLDRHLKKH 842
+ ++ ++C C + F Q+ +L H + H
Sbjct: 5 SSGQRVYECQECGKSFRQKGSLTLHERIH 33
Score = 27.9 bits (63), Expect = 1.5
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 227 CENCTKVFSDPSNLQRHIRTH 247
C+ C K F +L H R H
Sbjct: 13 CQECGKSFRQKGSLTLHERIH 33
Score = 26.8 bits (60), Expect = 3.3
Identities = 6/20 (30%), Positives = 11/20 (55%)
Query: 198 YRCESCSQTFCWRPHLNFHQ 217
Y C+ C ++F + L H+
Sbjct: 11 YECQECGKSFRQKGSLTLHE 30
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid
binding, KIAA1227 protein, structural genomics; NMR
{Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 55.3 bits (132), Expect = 2e-09
Identities = 21/89 (23%), Positives = 28/89 (31%), Gaps = 4/89 (4%)
Query: 22 GSSSKTTKDRYACKYCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRN 81
G+S K+ Y C+ C H R C YC F Q H
Sbjct: 7 GASPVENKEVYQCRLCNAKLSSLLEQGSHERLC--RNAAVCPYCSLRFFSPELKQEHES- 63
Query: 82 IHNKEKPFKCPLCDRCFGQQTNLDRHLKK 110
+ K C C R F ++ RH +
Sbjct: 64 -KCEYKKLTCLECMRTFKSSFSIWRHQVE 91
Score = 55.3 bits (132), Expect = 2e-09
Identities = 21/89 (23%), Positives = 28/89 (31%), Gaps = 4/89 (4%)
Query: 753 GSSSKTTKDRYACKYCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRN 812
G+S K+ Y C+ C H R C YC F Q H
Sbjct: 7 GASPVENKEVYQCRLCNAKLSSLLEQGSHERLC--RNAAVCPYCSLRFFSPELKQEHES- 63
Query: 813 IHNKEKPFKCPLCDRCFGQQTNLDRHLKK 841
+ K C C R F ++ RH +
Sbjct: 64 -KCEYKKLTCLECMRTFKSSFSIWRHQVE 91
Score = 50.7 bits (120), Expect = 6e-08
Identities = 15/79 (18%), Positives = 24/79 (30%), Gaps = 4/79 (5%)
Query: 223 RKFPCENCTKVFSDPSNLQRHIRTHHVGARQHACQECGKTFATSSGLKQHTHIHSSVKPF 282
+ C C S H R A C C F + ++H K
Sbjct: 15 EVYQCRLCNAKLSSLLEQGSHERLCRNAAV---CPYCSLRFFSPELKQEH-ESKCEYKKL 70
Query: 283 RCEVCHKAYTQFSNLCRHK 301
C C + + ++ RH+
Sbjct: 71 TCLECMRTFKSSFSIWRHQ 89
Score = 44.9 bits (105), Expect = 7e-06
Identities = 16/65 (24%), Positives = 26/65 (40%), Gaps = 1/65 (1%)
Query: 22 GSSSKTTKDRYACKYCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRN 81
GS + ++ C YC F H + + C C R+F S ++ RH
Sbjct: 33 GSHERLCRNAAVCPYCSLRFFSPELKQEH-ESKCEYKKLTCLECMRTFKSSFSIWRHQVE 91
Query: 82 IHNKE 86
+HN+
Sbjct: 92 VHNQN 96
Score = 44.9 bits (105), Expect = 7e-06
Identities = 16/65 (24%), Positives = 26/65 (40%), Gaps = 1/65 (1%)
Query: 753 GSSSKTTKDRYACKYCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRN 812
GS + ++ C YC F H + + C C R+F S ++ RH
Sbjct: 33 GSHERLCRNAAVCPYCSLRFFSPELKQEH-ESKCEYKKLTCLECMRTFKSSFSIWRHQVE 91
Query: 813 IHNKE 817
+HN+
Sbjct: 92 VHNQN 96
Score = 43.0 bits (100), Expect = 4e-05
Identities = 14/57 (24%), Positives = 18/57 (31%), Gaps = 3/57 (5%)
Query: 56 GEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKHE 112
++ Y+C+ C S H R N CP C F H K E
Sbjct: 13 NKEVYQCRLCNAKLSSLLEQGSHERLCRNA---AVCPYCSLRFFSPELKQEHESKCE 66
Score = 43.0 bits (100), Expect = 4e-05
Identities = 14/57 (24%), Positives = 18/57 (31%), Gaps = 3/57 (5%)
Query: 787 GEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKHE 843
++ Y+C+ C S H R N CP C F H K E
Sbjct: 13 NKEVYQCRLCNAKLSSLLEQGSHERLCRNA---AVCPYCSLRFFSPELKQEHESKCE 66
Score = 37.6 bits (86), Expect = 0.003
Identities = 15/67 (22%), Positives = 23/67 (34%), Gaps = 4/67 (5%)
Query: 182 ELEDHLITGHRYPPDQYRCESCSQTFCWRPHLNFHQAQVHGRKFPCENCTKVFSDPSNLQ 241
E H R + C CS F H+++ +K C C + F ++
Sbjct: 31 EQGSHE----RLCRNAAVCPYCSLRFFSPELKQEHESKCEYKKLTCLECMRTFKSSFSIW 86
Query: 242 RHIRTHH 248
RH H
Sbjct: 87 RHQVEVH 93
Score = 35.3 bits (80), Expect = 0.017
Identities = 14/69 (20%), Positives = 29/69 (42%), Gaps = 4/69 (5%)
Query: 266 SSGLKQHTHIHSSVKPFRCEVCHKAYTQFSNLCRHKRMHANCRMQIKCVKCDQSFSTVTS 325
SSG + + + + ++C +C+ + H+R+ CR C C F +
Sbjct: 2 SSGSSGASPVENK-EVYQCRLCNAKLSSLLEQGSHERL---CRNAAVCPYCSLRFFSPEL 57
Query: 326 LSKHKRFCD 334
+H+ C+
Sbjct: 58 KQEHESKCE 66
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 53.4 bits (128), Expect = 2e-09
Identities = 17/42 (40%), Positives = 25/42 (59%)
Query: 24 SSKTTKDRYACKYCGKVFPRSANLTRHLRTHTGEQPYKCKYC 65
SS T+ + AC+ CGK+F +L RH +H+GE+PY
Sbjct: 5 SSGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 53.4 bits (128), Expect = 2e-09
Identities = 17/42 (40%), Positives = 25/42 (59%)
Query: 755 SSKTTKDRYACKYCGKVFPRSANLTRHLRTHTGEQPYKCKYC 796
SS T+ + AC+ CGK+F +L RH +H+GE+PY
Sbjct: 5 SSGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 47.2 bits (112), Expect = 3e-07
Identities = 10/43 (23%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 52 RTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKCPLC 94
+ + C+ C + F +L RH H+ EKP+
Sbjct: 5 SSGRTRKQVACEICGKIFRDVYHLNRHKL-SHSGEKPYSSGPS 46
Score = 47.2 bits (112), Expect = 3e-07
Identities = 10/43 (23%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 783 RTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKCPLC 825
+ + C+ C + F +L RH H+ EKP+
Sbjct: 5 SSGRTRKQVACEICGKIFRDVYHLNRHKL-SHSGEKPYSSGPS 46
Score = 45.3 bits (107), Expect = 1e-06
Identities = 13/36 (36%), Positives = 17/36 (47%)
Query: 252 RQHACQECGKTFATSSGLKQHTHIHSSVKPFRCEVC 287
+Q AC+ CGK F L +H HS KP+
Sbjct: 11 KQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 37.2 bits (86), Expect = 8e-04
Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 223 RKFPCENCTKVFSDPSNLQRHIRTHHVGARQHACQEC 259
++ CE C K+F D +L RH + H G + ++
Sbjct: 11 KQVACEICGKIFRDVYHLNRHKLS-HSGEKPYSSGPS 46
Score = 35.7 bits (82), Expect = 0.003
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 276 HSSVKPFRCEVCHKAYTQFSNLCRHKRMH 304
+ K CE+C K + +L RHK H
Sbjct: 7 GRTRKQVACEICGKIFRDVYHLNRHKLSH 35
Score = 31.1 bits (70), Expect = 0.13
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 83 HNKEKPFKCPLCDRCFGQQTNLDRHLKKH 111
K C +C + F +L+RH H
Sbjct: 7 GRTRKQVACEICGKIFRDVYHLNRHKLSH 35
Score = 31.1 bits (70), Expect = 0.13
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 814 HNKEKPFKCPLCDRCFGQQTNLDRHLKKH 842
K C +C + F +L+RH H
Sbjct: 7 GRTRKQVACEICGKIFRDVYHLNRHKLSH 35
Score = 26.4 bits (58), Expect = 5.9
Identities = 11/36 (30%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 197 QYRCESCSQTFCWRPHLNFHQAQVHGRK-FPCENCT 231
Q CE C + F HLN H+ G K + +
Sbjct: 12 QVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSS 47
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
PDB: 2yta_A
Length = 42
Score = 53.1 bits (128), Expect = 2e-09
Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 50 HLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFK 90
+ GE PY C C +SF+ +L H R ++ P
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQR-SCSQSGPSS 41
Score = 53.1 bits (128), Expect = 2e-09
Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 781 HLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFK 821
+ GE PY C C +SF+ +L H R ++ P
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQR-SCSQSGPSS 41
Score = 47.7 bits (114), Expect = 2e-07
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQPYK 61
Y C CGK F + +L H R+ + P
Sbjct: 12 YLCGQCGKSFTQRGSLAVHQRSCSQSGPSS 41
Score = 47.7 bits (114), Expect = 2e-07
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQPYK 792
Y C CGK F + +L H R+ + P
Sbjct: 12 YLCGQCGKSFTQRGSLAVHQRSCSQSGPSS 41
Score = 41.1 bits (97), Expect = 3e-05
Identities = 10/35 (28%), Positives = 13/35 (37%)
Query: 248 HVGARQHACQECGKTFATSSGLKQHTHIHSSVKPF 282
G + C +CGK+F L H S P
Sbjct: 6 SGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPS 40
Score = 38.4 bits (90), Expect = 3e-04
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 272 HTHIHSSVKPFRCEVCHKAYTQFSNLCRHKRMH 304
+ P+ C C K++TQ +L H+R
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSC 34
Score = 34.9 bits (81), Expect = 0.004
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 83 HNKEKPFKCPLCDRCFGQQTNLDRHLKKH 111
E P+ C C + F Q+ +L H +
Sbjct: 6 SGGETPYLCGQCGKSFTQRGSLAVHQRSC 34
Score = 34.9 bits (81), Expect = 0.004
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 814 HNKEKPFKCPLCDRCFGQQTNLDRHLKKH 842
E P+ C C + F Q+ +L H +
Sbjct: 6 SGGETPYLCGQCGKSFTQRGSLAVHQRSC 34
Score = 28.4 bits (64), Expect = 1.1
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 225 FPCENCTKVFSDPSNLQRHIRTH 247
+ C C K F+ +L H R+
Sbjct: 12 YLCGQCGKSFTQRGSLAVHQRSC 34
Score = 27.2 bits (61), Expect = 2.9
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 198 YRCESCSQTFCWRPHLNFHQ 217
Y C C ++F R L HQ
Sbjct: 12 YLCGQCGKSFTQRGSLAVHQ 31
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger,
transcription factor, DNA binding protein; NMR {Mus
musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Length = 37
Score = 52.3 bits (126), Expect = 3e-09
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 50 HLRTHTGEQPYKCKYCERSFSISSNLQRHVR 80
R TG +P++C C+RSFS S +L H +
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRK 32
Score = 52.3 bits (126), Expect = 3e-09
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 781 HLRTHTGEQPYKCKYCERSFSISSNLQRHVR 811
R TG +P++C C+RSFS S +L H +
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRK 32
Score = 43.5 bits (103), Expect = 3e-06
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 78 HVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 111
R KPF+CP CDR F + +L H K+H
Sbjct: 2 STR-GSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 43.5 bits (103), Expect = 3e-06
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 809 HVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKH 842
R KPF+CP CDR F + +L H K+H
Sbjct: 2 STR-GSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 41.2 bits (97), Expect = 2e-05
Identities = 9/33 (27%), Positives = 20/33 (60%)
Query: 272 HTHIHSSVKPFRCEVCHKAYTQFSNLCRHKRMH 304
T + +KPF+C C +++++ +L H++ H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 38.9 bits (91), Expect = 1e-04
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 31 RYACKYCGKVFPRSANLTRHLRTH 54
+ C C + F RS +L H + H
Sbjct: 11 PFQCPDCDRSFSRSDHLALHRKRH 34
Score = 38.9 bits (91), Expect = 1e-04
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 762 RYACKYCGKVFPRSANLTRHLRTH 785
+ C C + F RS +L H + H
Sbjct: 11 PFQCPDCDRSFSRSDHLALHRKRH 34
Score = 35.8 bits (83), Expect = 0.002
Identities = 10/37 (27%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Query: 243 HIRTHHVGARQHACQECGKTFATSSGLKQHTHIHSSV 279
R G + C +C ++F+ S L H H V
Sbjct: 2 STRGS-TGIKPFQCPDCDRSFSRSDHLALHRKRHMLV 37
Score = 33.8 bits (78), Expect = 0.010
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 223 RKFPCENCTKVFSDPSNLQRHIRTH 247
+ F C +C + FS +L H + H
Sbjct: 10 KPFQCPDCDRSFSRSDHLALHRKRH 34
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 51.9 bits (125), Expect = 4e-09
Identities = 11/40 (27%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 52 RTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 91
+GE+PY C C+ +FS ++ L +H + +H +
Sbjct: 3 SGSSGEKPYSCAECKETFSDNNRLVQHQK-MHTVKSGPSS 41
Score = 51.9 bits (125), Expect = 4e-09
Identities = 11/40 (27%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 783 RTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKC 822
+GE+PY C C+ +FS ++ L +H + +H +
Sbjct: 3 SGSSGEKPYSCAECKETFSDNNRLVQHQK-MHTVKSGPSS 41
Score = 49.6 bits (119), Expect = 3e-08
Identities = 11/41 (26%), Positives = 19/41 (46%)
Query: 22 GSSSKTTKDRYACKYCGKVFPRSANLTRHLRTHTGEQPYKC 62
GSS + + Y+C C + F + L +H + HT +
Sbjct: 1 GSSGSSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
Score = 49.6 bits (119), Expect = 3e-08
Identities = 11/41 (26%), Positives = 19/41 (46%)
Query: 753 GSSSKTTKDRYACKYCGKVFPRSANLTRHLRTHTGEQPYKC 793
GSS + + Y+C C + F + L +H + HT +
Sbjct: 1 GSSGSSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
Score = 39.2 bits (92), Expect = 2e-04
Identities = 10/37 (27%), Positives = 19/37 (51%)
Query: 248 HVGARQHACQECGKTFATSSGLKQHTHIHSSVKPFRC 284
G + ++C EC +TF+ ++ L QH +H+
Sbjct: 5 SSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
Score = 37.3 bits (87), Expect = 7e-04
Identities = 9/29 (31%), Positives = 17/29 (58%)
Query: 276 HSSVKPFRCEVCHKAYTQFSNLCRHKRMH 304
S KP+ C C + ++ + L +H++MH
Sbjct: 5 SSGEKPYSCAECKETFSDNNRLVQHQKMH 33
Score = 33.8 bits (78), Expect = 0.010
Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Query: 83 HNKEKPFKCPLCDRCFGQQTNLDRHLKKH--EADDGSG 118
+ EKP+ C C F L +H K H ++ SG
Sbjct: 5 SSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSSG 42
Score = 33.8 bits (78), Expect = 0.010
Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Query: 814 HNKEKPFKCPLCDRCFGQQTNLDRHLKKH--EADDGSG 849
+ EKP+ C C F L +H K H ++ SG
Sbjct: 5 SSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSSG 42
Score = 30.4 bits (69), Expect = 0.18
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 225 FPCENCTKVFSDPSNLQRHIRTH 247
+ C C + FSD + L +H + H
Sbjct: 11 YSCAECKETFSDNNRLVQHQKMH 33
Score = 26.5 bits (59), Expect = 4.5
Identities = 8/20 (40%), Positives = 9/20 (45%)
Query: 198 YRCESCSQTFCWRPHLNFHQ 217
Y C C +TF L HQ
Sbjct: 11 YSCAECKETFSDNNRLVQHQ 30
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 55.1 bits (132), Expect = 1e-07
Identities = 74/426 (17%), Positives = 130/426 (30%), Gaps = 128/426 (30%)
Query: 583 ETFVKT-PATSPEIGKDESVINKSSPTP--------PDDPVEESKRSPTPQIVSRSPSPI 633
E F K P + D+ ++P VE SK Q+++ +
Sbjct: 35 EQFNKILPEPTEGFAADD---EPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEF 91
Query: 634 KNR--------SPSPPVSKANTTPMAYPKPIHPMSLEAFFPLKNFGSRSYPPFPPPHPTD 685
+N + + + + N T + K + ++ + + R PF
Sbjct: 92 ENCYLEGNDIHALAAKLLQENDTTLVKTKEL----IKNYITARIMAKR---PFDKKSN-- 142
Query: 686 PHERLCPPSLPGFN--PQRSFPFLGLMNGINNSLGVNRTPY--EHLLRSQISPYANKPFQ 741
+L F + + + + G G N Y E LR Y
Sbjct: 143 -------SAL--FRAVGEGNAQLVAIFGG----QG-NTDDYFEE--LRDLYQTY--HVLV 184
Query: 742 EILTSQNNAVNGSSSKTTKDRYACKYCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFS 801
L + +TT D KVF + N+ L + P ++ +
Sbjct: 185 GDLIKFSAETLSELIRTTLD------AEKVFTQGLNILEWLE-NPSNTP------DKDYL 231
Query: 802 ISSNLQRHVRNIHNKEKPFKCPL------------CDRCFGQQT-NLDRHLK---KHEAD 845
+S P CPL + G L +LK H
Sbjct: 232 LSI--------------PISCPLIGVIQLAHYVVTA-KLLGFTPGELRSYLKGATGH--- 273
Query: 846 DGSGLV-----SMADSPESSNENERE--DAYFDEIRSFMG---KVTY---SGDVAYNQEN 892
GLV + DS ES + R+ F F+G Y S + +++
Sbjct: 274 -SQGLVTAVAIAETDSWESFFVSVRKAITVLF-----FIGVRCYEAYPNTSLPPSILEDS 327
Query: 893 LYTGTNPPSPLIDVKDDDDNESEFLSDETEDTFIPQDFRKSPSEIEN--------GSPIS 944
L PSP++ + + + + ++T ++ +P + S + N G P S
Sbjct: 328 LENNEGVPSPMLSISNLTQEQVQDYVNKT-NSHLPAGKQVEISLV-NGAKNLVVSGPPQS 385
Query: 945 -YSLKT 949
Y L
Sbjct: 386 LYGLNL 391
Score = 50.8 bits (121), Expect = 2e-06
Identities = 91/561 (16%), Positives = 152/561 (27%), Gaps = 226/561 (40%)
Query: 383 YPGLFQPNQTPTPHHPFLSNPLLFNQSMKSNEELDRAKI--------NINLSVEAYYRFQ 434
+ LF +++ A++ N + Y+
Sbjct: 127 ITARIMAKRPFDKKSN----SALF-RAVGEGN----AQLVAIFGGQGNT----DDYF--- 170
Query: 435 LQKNVQQSEEKRK--NSPSPRKSDVPKTSGGKLFEFSESKDSPPTAEEANSN-----QRP 487
EE R + D+ K S L E + N + P
Sbjct: 171 --------EELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENP 222
Query: 488 SPARPTIS--ASNAVTYPDPREQLEVVTTDVKSDVNQKPRDKLTNFSID-KLSGKMDSPK 544
S P S ++ P L V Q L ++ + KL G +P
Sbjct: 223 SN-TPDKDYLLSIPISCP-----LIGVI--------Q-----LAHYVVTAKLLGF--TPG 261
Query: 545 DEDASEESKPKKAKYCDQPLDLS---IASKSSIDSDKQDAN--------------ETFVK 587
+ + + A Q L ++ IA S +S E +
Sbjct: 262 ELRSYLKG----ATGHSQGL-VTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAY-- 314
Query: 588 TPATSPEIGKDESVINKSSPTPPDDPVEESKRSPTPQIVSR--SPSPIKNRSPSPPVSKA 645
P TS P+ +D +E ++ P+P + + +++ V+K
Sbjct: 315 -PNTSLP------------PSILEDSLENNEGVPSPMLSISNLTQEQVQDY-----VNKT 356
Query: 646 NTT-PMAYPKPIHPMSLEAFFPLKNFGSRSY----PPFPPPHPTDPHERLCPPSLPGFNP 700
N+ P K + +S L N G+++ P P SL G N
Sbjct: 357 NSHLPAG--KQVE-IS------LVN-GAKNLVVSGP---------------PQSLYGLNL 391
Query: 701 ------------QRSFPFLGLMNGINNS----LGVNR-----TPYEHLLRSQISPY---A 736
Q PF S NR +P+ H S A
Sbjct: 392 TLRKAKAPSGLDQSRIPF---------SERKLKFSNRFLPVASPF-H------SHLLVPA 435
Query: 737 NKPFQEILTSQNNAVNGSSSKTTKDRYACKYCGKVFPRSANLTRHLRTHTGEQPYKCKYC 796
+ + L N + N + V+ T G
Sbjct: 436 SDLINKDLVKNNVSFNAKDIQIP-----------VY--------D--TFDGSDL------ 468
Query: 797 ERSFSISSNLQRHVRNIHNKEKPFKCPLCDR-------CFG-----QQTNLDRHLKKHEA 844
R S S +R V I P K + FG L K
Sbjct: 469 -RVLS-GSISERIVDCI--IRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNK---- 520
Query: 845 DDGSGL-VSMADSPESSNENE 864
DG+G+ V +A + + + +++
Sbjct: 521 -DGTGVRVIVAGTLDINPDDD 540
Score = 48.1 bits (114), Expect = 1e-05
Identities = 58/326 (17%), Positives = 93/326 (28%), Gaps = 120/326 (36%)
Query: 4 YANKPFQEILTSQNNAVNGSSSKTTKDRYACKYCGKVFPRSANLTRHLRTHTGEQPYKCK 63
Y L + +TT D KVF + N+ L + P
Sbjct: 180 Y--HVLVGDLIKFSAETLSELIRTTLD------AEKVFTQGLNILEWLE-NPSNTP---- 226
Query: 64 YCERSFSISSNLQRHVRNIHNKEKPFKCPL------------CDRCFGQQT-NLDRHLK- 109
++ + +S P CPL + G L +LK
Sbjct: 227 --DKDYLLSI--------------PISCPLIGVIQLAHYVVTA-KLLGFTPGELRSYLKG 269
Query: 110 --KHEADDGSGLV-----SMADSPESSNENERE--DAYFDEIRSFMG---KVTY---SGD 154
H GLV + DS ES + R+ F F+G Y S
Sbjct: 270 ATGH----SQGLVTAVAIAETDSWESFFVSVRKAITVLF-----FIGVRCYEAYPNTSLP 320
Query: 155 VAYNQENLYTGNNPPSPLIDVKDDDDNELEDHL-ITGHRYPPDQYRCESCSQTFCWRPHL 213
+ +++L PSP++ + + +++D++ T P + +
Sbjct: 321 PSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGK--------------QV 366
Query: 214 NFHQAQVHG-RKFPCENCTKVFSDPS----NLQRHIRTHHVGARQHACQECGKTFATSSG 268
+ V+G + V S P L +R K A SG
Sbjct: 367 --EISLVNGAKNL-------VVSGPPQSLYGLNLTLR---------------KAKA-PSG 401
Query: 269 LKQHTHIHSSVKPFRCEVCHKAYTQF 294
L Q S K K +F
Sbjct: 402 LDQSRIPFSERKL-------KFSNRF 420
Score = 47.0 bits (111), Expect = 3e-05
Identities = 94/594 (15%), Positives = 170/594 (28%), Gaps = 195/594 (32%)
Query: 67 RSFSISSNLQRHVRNIHNK-EKPFKCPLCDRCFGQQTNL-DRHLKK-HEADDGSGLVSMA 123
R ++S H E P Q L ++ K E +G
Sbjct: 7 RPLTLS----------HGSLEHVLLVPTASFFIASQ--LQEQFNKILPEPTEGFAA---D 51
Query: 124 DSPESSNE-------------NEREDAYFDEI-----RSFMGKVTYSGDVAYNQENLYTG 165
D P + E + FD++ F EN Y
Sbjct: 52 DEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEF--------------ENCYLE 97
Query: 166 NNPPSPLIDVKDDDDNELEDHLITGHRYPPDQYRCESCSQTFCWRPHLNFHQAQVHGRKF 225
N D+ H + + ++ N+ A++ ++
Sbjct: 98 GN------DI----------HALAAK-LLQENDTTLVKTKELI----KNYITARIMAKR- 135
Query: 226 PCENCTKVFSDPSNLQRHIRTHHVGARQHAC---QECGKTFATSSGLKQHTHIHSSVKPF 282
P + + S L R + + A+ A Q G T ++ ++ +
Sbjct: 136 PFDKKS-----NSALFRAVGEGN--AQLVAIFGGQ--G---NTDDYFEELRDLYQTYHVL 183
Query: 283 RCEVCHKAYTQFSNLCRHKRMHANCRMQIKCVKCDQSFSTVTSLSKHKRFCDS----TTP 338
++ + S L R + ++ F+ + P
Sbjct: 184 VGDLIKFSAETLSELIRTT------------LDAEKVFTQG---------LNILEWLENP 222
Query: 339 GTTPSGQNSLSA-MSHQTPGI-----PNPYLMYPRPGGTLPFYPPSLMPPYPGLFQPNQT 392
TP LS +S P I + Y++ + G F P L G
Sbjct: 223 SNTPDKDYLLSIPIS--CPLIGVIQLAH-YVVTAKLLG---FTPGELRSYLKGA------ 270
Query: 393 PTPHHPFLSNPLLFNQSMKSNEELDRAKININLSV---------EAYYRFQL-QKNVQQS 442
T H L + ++ S E + ++V EAY L ++ S
Sbjct: 271 -TGHSQGLVTAVAIAET-DSWESFFVSVRKA-ITVLFFIGVRCYEAYPNTSLPPSILEDS 327
Query: 443 EEKRKNSPSP--RKSDVPKTSGGKLFEFSESKDSPPTAEEANSNQRPSPARPTISAS--N 498
E + PSP S++ + ++ ++ + NS+ PA + S N
Sbjct: 328 LENNEGVPSPMLSISNLTQE---QVQDY---------VNKTNSH---LPAGKQVEISLVN 372
Query: 499 AVTYPDPREQLEVVTTDVKSDVNQKPRDKLTNFSIDKLSGKMDSPKDEDASEESKPKKAK 558
+ L VV+ P+ L ++ K S D+ S+ +K K
Sbjct: 373 G-----AK-NL-VVSGP--------PQS-LYGLNLTLRKAKAPSGLDQSRIPFSE-RKLK 415
Query: 559 YCDQ----------PLDLSIASKSSIDSDKQDANETF----VKTPATSPEIGKD 598
+ ++ L L A I+ D N +F ++ P G D
Sbjct: 416 FSNRFLPVASPFHSHL-LVPA-SDLINKDLVKNNVSFNAKDIQIPVYDTFDGSD 467
Score = 33.9 bits (77), Expect = 0.33
Identities = 40/270 (14%), Positives = 71/270 (26%), Gaps = 94/270 (34%)
Query: 66 ERSFSISSNLQRHVRNIH---------NKEKPFKCPLCDRC-FGQQTNLDRHLKKHEADD 115
E + + N +IH N K + + R K
Sbjct: 92 ENCY-LEGN------DIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSN-- 142
Query: 116 GSGLVSMADSPESS---------NENEREDAYFDEIRSFMGKVTYSGDVAYNQENLY-TG 165
S L + N ++ YF+E+R LY T
Sbjct: 143 -SALFRAVGEGNAQLVAIFGGQGNTDD----YFEELRD-----------------LYQTY 180
Query: 166 NNPPSPLIDVKDDDDNELEDHLITGHRY-----------------PPDQYRCESCSQTFC 208
+ LI + +EL + + P Y S +
Sbjct: 181 HVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLL-SIPISC- 238
Query: 209 WRPHLNFHQAQVHGRKFPCENCTKVFSDPSNLQRHIR--THH----VGARQHACQECGKT 262
P + Q H + P L+ +++ T H V A A + ++
Sbjct: 239 --PLIGVIQL-AHYVVT----AKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWES 291
Query: 263 FATSS----------GLK-QHTHIHSSVKP 281
F S G++ + ++S+ P
Sbjct: 292 FFVSVRKAITVLFFIGVRCYEAYPNTSLPP 321
Score = 33.5 bits (76), Expect = 0.47
Identities = 48/288 (16%), Positives = 70/288 (24%), Gaps = 100/288 (34%)
Query: 705 PFLGLMNG-INNSLGVNRTPYEHL--LRSQISPYANKPFQEILTSQNNAVNGSSSKTTKD 761
P L +G + + L V + L+ Q F +IL TT
Sbjct: 8 PLT-LSHGSLEHVLLVPTASFFIASQLQEQ--------FNKILPEPTEGFAADDEPTTPA 58
Query: 762 RYACKYCG----KVFPRSANLTRH-LRTHTGEQPYKCKYCERSFSISSNLQRHVRNIH-- 814
K+ G V P L E E + + N +IH
Sbjct: 59 ELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTE-------FENCY-LEGN------DIHAL 104
Query: 815 -------NKEKPFKCPLCDRC-FGQQTNLDRHLKKHEADDGSGLVSMADSPESS------ 860
N K + + R K S L +
Sbjct: 105 AAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSN---SALFRAVGEGNAQLVAIFG 161
Query: 861 ---NENEREDAYFDEIRSFMGKVTYSGDVAYNQENLYTGTNPP--SPLID---------V 906
N ++ YF+E+R LY T LI +
Sbjct: 162 GQGNTDD----YFEELRD-----------------LYQ-TYHVLVGDLIKFSAETLSELI 199
Query: 907 KDDDDNESEFLS--D-----ETEDTFIPQDFRKSPSEIENGSPISYSL 947
+ D E F + E +D+ S PIS L
Sbjct: 200 RTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLS-------IPISCPL 240
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens}
SCOP: g.37.1.1 PDB: 1va2_A
Length = 31
Score = 46.8 bits (112), Expect = 2e-07
Identities = 16/28 (57%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Query: 32 YACKY--CGKVFPRSANLTRHLRTHTGE 57
+ C + CGK F RS L RH RTHTGE
Sbjct: 3 FMCTWSYCGKRFTRSDELQRHKRTHTGE 30
Score = 46.8 bits (112), Expect = 2e-07
Identities = 16/28 (57%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Query: 763 YACKY--CGKVFPRSANLTRHLRTHTGE 788
+ C + CGK F RS L RH RTHTGE
Sbjct: 3 FMCTWSYCGKRFTRSDELQRHKRTHTGE 30
Score = 36.8 bits (86), Expect = 7e-04
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 3/31 (9%)
Query: 59 PYKCKY--CERSFSISSNLQRHVRNIHNKEK 87
P+ C + C + F+ S LQRH R H EK
Sbjct: 2 PFMCTWSYCGKRFTRSDELQRHKR-THTGEK 31
Score = 36.8 bits (86), Expect = 7e-04
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 3/31 (9%)
Query: 790 PYKCKY--CERSFSISSNLQRHVRNIHNKEK 818
P+ C + C + F+ S LQRH R H EK
Sbjct: 2 PFMCTWSYCGKRFTRSDELQRHKR-THTGEK 31
Score = 35.3 bits (82), Expect = 0.003
Identities = 13/27 (48%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Query: 223 RKFPC--ENCTKVFSDPSNLQRHIRTH 247
R F C C K F+ LQRH RTH
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTH 27
Score = 30.7 bits (70), Expect = 0.12
Identities = 9/27 (33%), Positives = 13/27 (48%), Gaps = 2/27 (7%)
Query: 87 KPFKC--PLCDRCFGQQTNLDRHLKKH 111
+PF C C + F + L RH + H
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTH 27
Score = 30.7 bits (70), Expect = 0.12
Identities = 9/27 (33%), Positives = 13/27 (48%), Gaps = 2/27 (7%)
Query: 818 KPFKC--PLCDRCFGQQTNLDRHLKKH 842
+PF C C + F + L RH + H
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTH 27
Score = 29.9 bits (68), Expect = 0.22
Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 280 KPFRC--EVCHKAYTQFSNLCRHKRMH 304
+PF C C K +T+ L RHKR H
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTH 27
Score = 29.5 bits (67), Expect = 0.32
Identities = 11/31 (35%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
Query: 252 RQHAC--QECGKTFATSSGLKQHTHIHSSVK 280
R C CGK F S L++H H+ K
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 44
Score = 45.6 bits (108), Expect = 9e-07
Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 49 RHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 88
+ GE P+KC C+R F+ + L +H R H ++
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHER-THARKSG 40
Score = 45.6 bits (108), Expect = 9e-07
Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 780 RHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKP 819
+ GE P+KC C+R F+ + L +H R H ++
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHER-THARKSG 40
Score = 42.2 bits (99), Expect = 1e-05
Identities = 14/36 (38%), Positives = 17/36 (47%)
Query: 83 HNKEKPFKCPLCDRCFGQQTNLDRHLKKHEADDGSG 118
E PFKC CDR F Q+ L +H + H G
Sbjct: 7 GAGENPFKCSKCDRVFTQRNYLVQHERTHARKSGPS 42
Score = 42.2 bits (99), Expect = 1e-05
Identities = 14/36 (38%), Positives = 17/36 (47%)
Query: 814 HNKEKPFKCPLCDRCFGQQTNLDRHLKKHEADDGSG 849
E PFKC CDR F Q+ L +H + H G
Sbjct: 7 GAGENPFKCSKCDRVFTQRNYLVQHERTHARKSGPS 42
Score = 41.4 bits (97), Expect = 3e-05
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 271 QHTHIHSSVKPFRCEVCHKAYTQFSNLCRHKRMHA 305
+ PF+C C + +TQ + L +H+R HA
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHA 36
Score = 39.8 bits (93), Expect = 8e-05
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQP 59
+ C C +VF + L +H RTH +
Sbjct: 13 FKCSKCDRVFTQRNYLVQHERTHARKSG 40
Score = 39.8 bits (93), Expect = 8e-05
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQP 790
+ C C +VF + L +H RTH +
Sbjct: 13 FKCSKCDRVFTQRNYLVQHERTHARKSG 40
Score = 33.3 bits (76), Expect = 0.021
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 216 HQAQVHGRK-FPCENCTKVFSDPSNLQRHIRTH 247
+ G F C C +VF+ + L +H RTH
Sbjct: 3 SGSSGAGENPFKCSKCDRVFTQRNYLVQHERTH 35
Score = 33.3 bits (76), Expect = 0.021
Identities = 8/33 (24%), Positives = 13/33 (39%)
Query: 245 RTHHVGARQHACQECGKTFATSSGLKQHTHIHS 277
+ G C +C + F + L QH H+
Sbjct: 4 GSSGAGENPFKCSKCDRVFTQRNYLVQHERTHA 36
Score = 26.7 bits (59), Expect = 4.2
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 312 KCVKCDQSFSTVTSLSKHKR 331
KC KCD+ F+ L +H+R
Sbjct: 14 KCSKCDRVFTQRNYLVQHER 33
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A
1are_A
Length = 29
Score = 44.2 bits (105), Expect = 2e-06
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGE 57
+ C+ C + F R +L RH R+HT E
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNE 28
Score = 44.2 bits (105), Expect = 2e-06
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGE 788
+ C+ C + F R +L RH R+HT E
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNE 28
Score = 38.5 bits (90), Expect = 2e-04
Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 59 PYKCKYCERSFSISSNLQRHVRNIHNKEK 87
+ C+ C R+F+ +L+RH R H EK
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYR-SHTNEK 29
Score = 38.5 bits (90), Expect = 2e-04
Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 790 PYKCKYCERSFSISSNLQRHVRNIHNKEK 818
+ C+ C R+F+ +L+RH R H EK
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYR-SHTNEK 29
Score = 36.5 bits (85), Expect = 8e-04
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 87 KPFKCPLCDRCFGQQTNLDRHLKKH 111
+ F C +C R F +Q +L RH + H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSH 25
Score = 36.5 bits (85), Expect = 8e-04
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 818 KPFKCPLCDRCFGQQTNLDRHLKKH 842
+ F C +C R F +Q +L RH + H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSH 25
Score = 36.5 bits (85), Expect = 0.001
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 223 RKFPCENCTKVFSDPSNLQRHIRTH 247
R F CE CT+ F+ +L+RH R+H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSH 25
Score = 33.8 bits (78), Expect = 0.009
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 280 KPFRCEVCHKAYTQFSNLCRHKRMH 304
+ F CEVC +A+ + +L RH R H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSH 25
Score = 30.7 bits (70), Expect = 0.11
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 252 RQHACQECGKTFATSSGLKQHTHIHSSVK 280
R C+ C + FA LK+H H++ K
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK 29
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers,
4-stranded parallel/anti-parallel beta- sheet,
structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1
Length = 102
Score = 45.9 bits (108), Expect = 3e-06
Identities = 20/84 (23%), Positives = 29/84 (34%), Gaps = 4/84 (4%)
Query: 17 NNAVNGSSSKTTKDRYACKYCGKVFPRSANLTRHLRT-HTG---EQPYKCKYCERSFSIS 72
++ + +K + Y CKYC P T H+ + H Y C C
Sbjct: 4 HHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRY 63
Query: 73 SNLQRHVRNIHNKEKPFKCPLCDR 96
L H H E+ FK + R
Sbjct: 64 DALSEHNLKYHPGEENFKLTMVKR 87
Score = 45.9 bits (108), Expect = 3e-06
Identities = 20/84 (23%), Positives = 29/84 (34%), Gaps = 4/84 (4%)
Query: 748 NNAVNGSSSKTTKDRYACKYCGKVFPRSANLTRHLRT-HTG---EQPYKCKYCERSFSIS 803
++ + +K + Y CKYC P T H+ + H Y C C
Sbjct: 4 HHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRY 63
Query: 804 SNLQRHVRNIHNKEKPFKCPLCDR 827
L H H E+ FK + R
Sbjct: 64 DALSEHNLKYHPGEENFKLTMVKR 87
Score = 45.5 bits (107), Expect = 4e-06
Identities = 14/75 (18%), Positives = 26/75 (34%), Gaps = 3/75 (4%)
Query: 46 NLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIH---NKEKPFKCPLCDRCFGQQT 102
+ + + E Y+CKYC + HV + H + C C+ +
Sbjct: 5 HHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYD 64
Query: 103 NLDRHLKKHEADDGS 117
L H K+ + +
Sbjct: 65 ALSEHNLKYHPGEEN 79
Score = 45.5 bits (107), Expect = 4e-06
Identities = 14/75 (18%), Positives = 26/75 (34%), Gaps = 3/75 (4%)
Query: 777 NLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIH---NKEKPFKCPLCDRCFGQQT 833
+ + + E Y+CKYC + HV + H + C C+ +
Sbjct: 5 HHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYD 64
Query: 834 NLDRHLKKHEADDGS 848
L H K+ + +
Sbjct: 65 ALSEHNLKYHPGEEN 79
Score = 37.8 bits (87), Expect = 0.002
Identities = 14/75 (18%), Positives = 25/75 (33%), Gaps = 4/75 (5%)
Query: 216 HQAQVHGRKFPCENCTKVFSDPSNLQRHIRTHHVGARQ---HACQECGKTFATSSGLKQH 272
Q + + C+ CT D + H+ + H + C EC L +H
Sbjct: 10 QQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEH 69
Query: 273 -THIHSSVKPFRCEV 286
H + F+ +
Sbjct: 70 NLKYHPGEENFKLTM 84
Score = 32.8 bits (74), Expect = 0.12
Identities = 12/65 (18%), Positives = 19/65 (29%), Gaps = 5/65 (7%)
Query: 191 HRYPPDQYRCESCSQTFCWRPHLNFHQAQVH-----GRKFPCENCTKVFSDPSNLQRHIR 245
++ Y C+ C+ FH H + C C + L H
Sbjct: 12 NKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNL 71
Query: 246 THHVG 250
+H G
Sbjct: 72 KYHPG 76
Score = 28.2 bits (62), Expect = 4.7
Identities = 10/76 (13%), Positives = 23/76 (30%), Gaps = 5/76 (6%)
Query: 238 SNLQRHIRTHHVGARQHACQECGKTFATSSGLKQH---THIHSSVKP-FRCEVCHKAYTQ 293
+ H + + + C+ C + H H + + + C C+ +
Sbjct: 3 HHHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKR 62
Query: 294 FSNLCRH-KRMHANCR 308
+ L H + H
Sbjct: 63 YDALSEHNLKYHPGEE 78
>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding
protein; NMR {Homo sapiens}
Length = 37
Score = 41.6 bits (98), Expect = 2e-05
Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
Query: 31 RYACKY--CGKVFPRSANLTRHLRTHTGE 57
++ C CGKV+ ++++L HLR HTGE
Sbjct: 8 QHICHIQGCGKVYGKTSHLRAHLRWHTGE 36
Score = 41.6 bits (98), Expect = 2e-05
Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
Query: 762 RYACKY--CGKVFPRSANLTRHLRTHTGE 788
++ C CGKV+ ++++L HLR HTGE
Sbjct: 8 QHICHIQGCGKVYGKTSHLRAHLRWHTGE 36
Score = 33.9 bits (78), Expect = 0.010
Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Query: 252 RQHAC--QECGKTFATSSGLKQHTHIHS 277
+QH C Q CGK + +S L+ H H+
Sbjct: 7 KQHICHIQGCGKVYGKTSHLRAHLRWHT 34
Score = 33.5 bits (77), Expect = 0.014
Identities = 9/27 (33%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Query: 223 RKFPC--ENCTKVFSDPSNLQRHIRTH 247
++ C + C KV+ S+L+ H+R H
Sbjct: 7 KQHICHIQGCGKVYGKTSHLRAHLRWH 33
Score = 30.8 bits (70), Expect = 0.13
Identities = 8/35 (22%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
Query: 55 TGEQPYKCKY--CERSFSISSNLQRHVRNIHNKEK 87
++ + C C + + +S+L+ H+R H E+
Sbjct: 4 GKKKQHICHIQGCGKVYGKTSHLRAHLR-WHTGER 37
Score = 30.8 bits (70), Expect = 0.13
Identities = 8/35 (22%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
Query: 786 TGEQPYKCKY--CERSFSISSNLQRHVRNIHNKEK 818
++ + C C + + +S+L+ H+R H E+
Sbjct: 4 GKKKQHICHIQGCGKVYGKTSHLRAHLR-WHTGER 37
Score = 30.4 bits (69), Expect = 0.17
Identities = 10/30 (33%), Positives = 13/30 (43%), Gaps = 2/30 (6%)
Query: 277 SSVKPFRCEV--CHKAYTQFSNLCRHKRMH 304
K C + C K Y + S+L H R H
Sbjct: 4 GKKKQHICHIQGCGKVYGKTSHLRAHLRWH 33
Score = 28.5 bits (64), Expect = 0.76
Identities = 9/30 (30%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 84 NKEKPFKCPL--CDRCFGQQTNLDRHLKKH 111
K+K C + C + +G+ ++L HL+ H
Sbjct: 4 GKKKQHICHIQGCGKVYGKTSHLRAHLRWH 33
Score = 28.5 bits (64), Expect = 0.76
Identities = 9/30 (30%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 815 NKEKPFKCPL--CDRCFGQQTNLDRHLKKH 842
K+K C + C + +G+ ++L HL+ H
Sbjct: 4 GKKKQHICHIQGCGKVYGKTSHLRAHLRWH 33
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_V
Length = 1275
Score = 45.2 bits (106), Expect = 1e-04
Identities = 29/253 (11%), Positives = 67/253 (26%), Gaps = 53/253 (20%)
Query: 533 IDKLSGKMDSPKDEDASEESKPKKAKYCDQPLDLSIASKSSIDSDKQDANETFVKTPATS 592
I + + S K D++E S ++ D+ + A ++ + + + + S
Sbjct: 4 IPRKTKGKSSGKGNDSTERSDDGSSQLRDKQN--NKAGPATTEPGTSNREQYRARPGIAS 61
Query: 593 PEIGKDESVINKSSPTPPDDPVEESKRSPTPQIVSRSPSPIKNRSPSPPVSKANTTPMAY 652
+ + + + D+ + K + + S + + T A
Sbjct: 62 VQRATESA---ELPMKNNDEGTPDKKGNT-------RGDLVNEHSEAKDEADEATQKQAK 111
Query: 653 PKPIHPMSLEAFFPLKNFGSRSYPPFPPPHPTDPHERLCPPSLPGFNPQRSFPFLGLMNG 712
K + S + +
Sbjct: 112 DTDKS----------KAQVTYSDTGINNANELSRSGNVDNEG------------------ 143
Query: 713 INNSLGVNRTPYEHLLRSQISPYANKPFQEILTSQNNAVNGSSSKTTKDRYACKYCGKVF 772
G N+ P +S + I++ V + ++ Y C C V
Sbjct: 144 -----GSNQKP--------MSTRIAEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVL 190
Query: 773 PRSANLTRHLRTH 785
+L H+ +H
Sbjct: 191 FSPLDLDAHVASH 203
Score = 38.7 bits (89), Expect = 0.012
Identities = 8/32 (25%), Positives = 14/32 (43%)
Query: 222 GRKFPCENCTKVFSDPSNLQRHIRTHHVGARQ 253
G + C C+ V P +L H+ +H +
Sbjct: 178 GHGYQCHVCSAVLFSPLDLDAHVASHGLHGNM 209
Score = 36.8 bits (84), Expect = 0.040
Identities = 25/208 (12%), Positives = 46/208 (22%), Gaps = 8/208 (3%)
Query: 604 KSSPTPPDDPVEESKRSPTPQIVSRSPSPIKNRSPSPPVSKANTTPMAYPKPIHPMSLEA 663
K P T + S S + A T P + A
Sbjct: 2 KRIPRKTKGKSSGKGNDSTER--SDDGSSQLRDKQNNKAGPATTEP----GTSNREQYRA 55
Query: 664 FFPLKNFGSRSYPPFPPPHPTDPHERLCPPSLPGFNPQRSFPFLGLMNGINNSLGVNRTP 723
+ + + P D + G + +
Sbjct: 56 RPGIASVQRATESAELPMKNNDEGTPDKKGNTRGDLVNEHSEAKDEADEATQKQAKDTDK 115
Query: 724 YEHLLRSQISPYANKPFQEILTSQNNAVNGSSSKTTKDRYACKYCGKVFPRSANLTRHLR 783
+ + + N E+ S N G S++ + + +
Sbjct: 116 SKAQVTYSDTGINNA--NELSRSGNVDNEGGSNQKPMSTRIAEATSAIVSKHPARVGLPP 173
Query: 784 THTGEQPYKCKYCERSFSISSNLQRHVR 811
T + Y+C C +L HV
Sbjct: 174 TASSGHGYQCHVCSAVLFSPLDLDAHVA 201
Score = 36.0 bits (82), Expect = 0.084
Identities = 10/53 (18%), Positives = 19/53 (35%)
Query: 2 SPYANKPFQEILTSQNNAVNGSSSKTTKDRYACKYCGKVFPRSANLTRHLRTH 54
S + I++ V + ++ Y C C V +L H+ +H
Sbjct: 151 STRIAEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASH 203
Score = 35.2 bits (80), Expect = 0.12
Identities = 8/50 (16%), Positives = 13/50 (26%)
Query: 255 ACQECGKTFATSSGLKQHTHIHSSVKPFRCEVCHKAYTQFSNLCRHKRMH 304
+ + SS ++C VC +L H H
Sbjct: 154 IAEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASH 203
Score = 32.5 bits (73), Expect = 0.90
Identities = 12/71 (16%), Positives = 21/71 (29%)
Query: 10 QEILTSQNNAVNGSSSKTTKDRYACKYCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSF 69
E+ S N G S++ + + + T + Y+C C
Sbjct: 131 NELSRSGNVDNEGGSNQKPMSTRIAEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVL 190
Query: 70 SISSNLQRHVR 80
+L HV
Sbjct: 191 FSPLDLDAHVA 201
Score = 32.5 bits (73), Expect = 0.91
Identities = 5/33 (15%), Positives = 7/33 (21%)
Query: 248 HVGARQHACQECGKTFATSSGLKQHTHIHSSVK 280
+ C C + L H H
Sbjct: 175 ASSGHGYQCHVCSAVLFSPLDLDAHVASHGLHG 207
Score = 31.0 bits (69), Expect = 2.9
Identities = 8/41 (19%), Positives = 14/41 (34%)
Query: 83 HNKEKPFKCPLCDRCFGQQTNLDRHLKKHEADDGSGLVSMA 123
+ ++C +C +LD H+ H L S
Sbjct: 175 ASSGHGYQCHVCSAVLFSPLDLDAHVASHGLHGNMTLTSSE 215
Score = 31.0 bits (69), Expect = 2.9
Identities = 8/41 (19%), Positives = 14/41 (34%)
Query: 814 HNKEKPFKCPLCDRCFGQQTNLDRHLKKHEADDGSGLVSMA 854
+ ++C +C +LD H+ H L S
Sbjct: 175 ASSGHGYQCHVCSAVLFSPLDLDAHVASHGLHGNMTLTSSE 215
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 37.5 bits (86), Expect = 5e-04
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 24 SSKTTKDRYACKYCGKVFPRSANLTRHLRTHTGEQ 58
SS ++ + C+YC KVF +L HLR HT E+
Sbjct: 2 SSGSSGKIFTCEYCNKVFKFKHSLQAHLRIHTNEK 36
Score = 37.5 bits (86), Expect = 5e-04
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 755 SSKTTKDRYACKYCGKVFPRSANLTRHLRTHTGEQ 789
SS ++ + C+YC KVF +L HLR HT E+
Sbjct: 2 SSGSSGKIFTCEYCNKVFKFKHSLQAHLRIHTNEK 36
Score = 30.2 bits (67), Expect = 0.20
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 221 HGRKFPCENCTKVFSDPSNLQRHIRTH 247
G+ F CE C KVF +LQ H+R H
Sbjct: 6 SGKIFTCEYCNKVFKFKHSLQAHLRIH 32
Score = 28.7 bits (63), Expect = 0.83
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 60 YKCKYCERSFSISSNLQRHVRNIHNKEK 87
+ C+YC + F +LQ H+R IH EK
Sbjct: 10 FTCEYCNKVFKFKHSLQAHLR-IHTNEK 36
Score = 28.7 bits (63), Expect = 0.83
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 791 YKCKYCERSFSISSNLQRHVRNIHNKEK 818
+ C+YC + F +LQ H+R IH EK
Sbjct: 10 FTCEYCNKVFKFKHSLQAHLR-IHTNEK 36
Score = 28.3 bits (62), Expect = 0.97
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 277 SSVKPFRCEVCHKAYTQFSNLCRHKRMHAN 306
SS K F CE C+K + +L H R+H N
Sbjct: 5 SSGKIFTCEYCNKVFKFKHSLQAHLRIHTN 34
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc
finger, classical zinc finger, transcription; NMR {Homo
sapiens}
Length = 30
Score = 36.3 bits (83), Expect = 0.001
Identities = 16/30 (53%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 58 QPYKCKYCERSFSISSNLQRHVRNIHNKEK 87
+PY C +C+R F+ LQRHVR IH EK
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVR-IHTGEK 30
Score = 36.3 bits (83), Expect = 0.001
Identities = 16/30 (53%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 789 QPYKCKYCERSFSISSNLQRHVRNIHNKEK 818
+PY C +C+R F+ LQRHVR IH EK
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVR-IHTGEK 30
Score = 35.9 bits (82), Expect = 0.002
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTGEQ 58
Y C +C + F L RH+R HTGE+
Sbjct: 4 YVCIHCQRQFADPGALQRHVRIHTGEK 30
Score = 35.9 bits (82), Expect = 0.002
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTGEQ 789
Y C +C + F L RH+R HTGE+
Sbjct: 4 YVCIHCQRQFADPGALQRHVRIHTGEK 30
Score = 35.1 bits (80), Expect = 0.003
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 223 RKFPCENCTKVFSDPSNLQRHIRTH 247
+ + C +C + F+DP LQRH+R H
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIH 26
Score = 28.2 bits (62), Expect = 0.82
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 279 VKPFRCEVCHKAYTQFSNLCRHKRMH 304
+KP+ C C + + L RH R+H
Sbjct: 1 MKPYVCIHCQRQFADPGALQRHVRIH 26
Score = 28.2 bits (62), Expect = 0.95
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 252 RQHACQECGKTFATSSGLKQHTHIHSSVK 280
+ + C C + FA L++H IH+ K
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIHTGEK 30
Score = 26.6 bits (58), Expect = 3.3
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 87 KPFKCPLCDRCFGQQTNLDRHLKKHEAD 114
KP+ C C R F L RH++ H +
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIHTGE 29
Score = 26.6 bits (58), Expect = 3.3
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 818 KPFKCPLCDRCFGQQTNLDRHLKKHEAD 845
KP+ C C R F L RH++ H +
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIHTGE 29
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 98
Score = 38.0 bits (87), Expect = 0.001
Identities = 12/62 (19%), Positives = 24/62 (38%), Gaps = 2/62 (3%)
Query: 29 KDRYACKYCGKVFPRS-ANLTRHLRT-HTGEQPYKCKYCERSFSISSNLQRHVRNIHNKE 86
+ C C V ++ L +H+ + KC++C + F + L H H+ +
Sbjct: 22 RGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAK 81
Query: 87 KP 88
Sbjct: 82 PS 83
Score = 38.0 bits (87), Expect = 0.001
Identities = 12/62 (19%), Positives = 24/62 (38%), Gaps = 2/62 (3%)
Query: 760 KDRYACKYCGKVFPRS-ANLTRHLRT-HTGEQPYKCKYCERSFSISSNLQRHVRNIHNKE 817
+ C C V ++ L +H+ + KC++C + F + L H H+ +
Sbjct: 22 RGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAK 81
Query: 818 KP 819
Sbjct: 82 PS 83
Score = 37.6 bits (86), Expect = 0.002
Identities = 20/67 (29%), Positives = 26/67 (38%), Gaps = 2/67 (2%)
Query: 217 QAQVHGRK-FPCENCTKVFSDP-SNLQRHIRTHHVGARQHACQECGKTFATSSGLKQHTH 274
Q +H R C C V L++H+ CQ C K F + +GL HT
Sbjct: 16 QRAIHERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTM 75
Query: 275 IHSSVKP 281
S KP
Sbjct: 76 AEHSAKP 82
Score = 30.3 bits (67), Expect = 0.69
Identities = 10/52 (19%), Positives = 18/52 (34%), Gaps = 1/52 (1%)
Query: 60 YKCKYCER-SFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKK 110
C C + L++H+ + KC C + F + L+ H
Sbjct: 25 AVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMA 76
Score = 30.3 bits (67), Expect = 0.69
Identities = 10/52 (19%), Positives = 18/52 (34%), Gaps = 1/52 (1%)
Query: 791 YKCKYCER-SFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKK 841
C C + L++H+ + KC C + F + L+ H
Sbjct: 25 AVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMA 76
Score = 29.9 bits (66), Expect = 0.92
Identities = 13/51 (25%), Positives = 19/51 (37%), Gaps = 2/51 (3%)
Query: 255 ACQECGK-TFATSSGLKQHTHI-HSSVKPFRCEVCHKAYTQFSNLCRHKRM 303
C C T T GLK+H + +C+ C K + + L H
Sbjct: 26 VCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMA 76
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription;
NMR {Mus musculus} SCOP: g.37.1.1
Length = 35
Score = 35.9 bits (82), Expect = 0.002
Identities = 8/27 (29%), Positives = 18/27 (66%)
Query: 54 HTGEQPYKCKYCERSFSISSNLQRHVR 80
+G++P+ C+ C +F+ +N RH++
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLK 28
Score = 35.9 bits (82), Expect = 0.002
Identities = 8/27 (29%), Positives = 18/27 (66%)
Query: 785 HTGEQPYKCKYCERSFSISSNLQRHVR 811
+G++P+ C+ C +F+ +N RH++
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLK 28
Score = 32.8 bits (74), Expect = 0.025
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 83 HNKEKPFKCPLCDRCFGQQTNLDRHLKKH 111
+ ++PF C +C F + N RHLK H
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVH 30
Score = 32.8 bits (74), Expect = 0.025
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 814 HNKEKPFKCPLCDRCFGQQTNLDRHLKKH 842
+ ++PF C +C F + N RHLK H
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVH 30
Score = 32.0 bits (72), Expect = 0.042
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 276 HSSVKPFRCEVCHKAYTQFSNLCRHKRMHAN 306
S +PF C +C A+T +N RH ++H +
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVHTD 32
Score = 29.7 bits (66), Expect = 0.29
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHT 55
+ C+ C F AN RHL+ HT
Sbjct: 8 FVCRICLSAFTTKANCARHLKVHT 31
Score = 29.7 bits (66), Expect = 0.29
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHT 786
+ C+ C F AN RHL+ HT
Sbjct: 8 FVCRICLSAFTTKANCARHLKVHT 31
Score = 26.6 bits (58), Expect = 4.2
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 223 RKFPCENCTKVFSDPSNLQRHIRTH 247
R F C C F+ +N RH++ H
Sbjct: 6 RPFVCRICLSAFTTKANCARHLKVH 30
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 30
Score = 35.6 bits (82), Expect = 0.002
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 87 KPFKCPLCDRCFGQQTNLDRHLKK 110
K + C LC+R F ++ L RH +K
Sbjct: 1 KAYACGLCNRAFTRRDLLIRHAQK 24
Score = 35.6 bits (82), Expect = 0.002
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 818 KPFKCPLCDRCFGQQTNLDRHLKK 841
K + C LC+R F ++ L RH +K
Sbjct: 1 KAYACGLCNRAFTRRDLLIRHAQK 24
Score = 32.9 bits (75), Expect = 0.018
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 58 QPYKCKYCERSFSISSNLQRHVRNIHN 84
+ Y C C R+F+ L RH + IH+
Sbjct: 1 KAYACGLCNRAFTRRDLLIRHAQKIHS 27
Score = 32.9 bits (75), Expect = 0.018
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 789 QPYKCKYCERSFSISSNLQRHVRNIHN 815
+ Y C C R+F+ L RH + IH+
Sbjct: 1 KAYACGLCNRAFTRRDLLIRHAQKIHS 27
Score = 26.7 bits (59), Expect = 2.9
Identities = 9/27 (33%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Query: 280 KPFRCEVCHKAYTQFSNLCRH-KRMHA 305
K + C +C++A+T+ L RH +++H+
Sbjct: 1 KAYACGLCNRAFTRRDLLIRHAQKIHS 27
Score = 25.6 bits (56), Expect = 8.1
Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 32 YACKYCGKVFPRSANLTRHLRT-HTG 56
YAC C + F R L RH + H+G
Sbjct: 3 YACGLCNRAFTRRDLLIRHAQKIHSG 28
Score = 25.6 bits (56), Expect = 8.1
Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 763 YACKYCGKVFPRSANLTRHLRT-HTG 787
YAC C + F R L RH + H+G
Sbjct: 3 YACGLCNRAFTRRDLLIRHAQKIHSG 28
>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif,
transcription regulation, zinc-finger; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 47
Score = 36.0 bits (83), Expect = 0.002
Identities = 9/29 (31%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 31 RYACKY--CGKVFPRSANLTRHLRTHTGE 57
+ C + C K F R N+ H++TH +
Sbjct: 18 TFECLFPGCTKTFKRRYNIRSHIQTHLED 46
Score = 36.0 bits (83), Expect = 0.002
Identities = 9/29 (31%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 762 RYACKY--CGKVFPRSANLTRHLRTHTGE 788
+ C + C K F R N+ H++TH +
Sbjct: 18 TFECLFPGCTKTFKRRYNIRSHIQTHLED 46
Score = 33.7 bits (77), Expect = 0.015
Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 223 RKFPC--ENCTKVFSDPSNLQRHIRTH 247
+ F C CTK F N++ HI+TH
Sbjct: 17 KTFECLFPGCTKTFKRRYNIRSHIQTH 43
Score = 25.6 bits (56), Expect = 9.8
Identities = 9/33 (27%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 84 NKEKPFKCPL--CDRCFGQQTNLDRHLKKHEAD 114
+K F+C C + F ++ N+ H++ H D
Sbjct: 14 MPDKTFECLFPGCTKTFKRRYNIRSHIQTHLED 46
Score = 25.6 bits (56), Expect = 9.8
Identities = 9/33 (27%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 815 NKEKPFKCPL--CDRCFGQQTNLDRHLKKHEAD 845
+K F+C C + F ++ N+ H++ H D
Sbjct: 14 MPDKTFECLFPGCTKTFKRRYNIRSHIQTHLED 46
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1
Length = 33
Score = 35.7 bits (82), Expect = 0.002
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 31 RYACKYCGKVFPRSANLTRHLRTHTGEQPYK 61
++AC C K F RS +L++H+ H +
Sbjct: 2 KFACPECPKRFMRSDHLSKHITLHELLGEER 32
Score = 35.7 bits (82), Expect = 0.002
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 762 RYACKYCGKVFPRSANLTRHLRTHTGEQPYK 792
++AC C K F RS +L++H+ H +
Sbjct: 2 KFACPECPKRFMRSDHLSKHITLHELLGEER 32
Score = 29.1 bits (65), Expect = 0.42
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 224 KFPCENCTKVFSDPSNLQRHIRTH 247
KF C C K F +L +HI H
Sbjct: 2 KFACPECPKRFMRSDHLSKHITLH 25
Score = 28.0 bits (62), Expect = 1.2
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 89 FKCPLCDRCFGQQTNLDRHLKKHEAD 114
F CP C + F + +L +H+ HE
Sbjct: 3 FACPECPKRFMRSDHLSKHITLHELL 28
Score = 28.0 bits (62), Expect = 1.2
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 820 FKCPLCDRCFGQQTNLDRHLKKHEAD 845
F CP C + F + +L +H+ HE
Sbjct: 3 FACPECPKRFMRSDHLSKHITLHELL 28
Score = 26.8 bits (59), Expect = 3.5
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 255 ACQECGKTFATSSGLKQHTHIHSSVKPFR 283
AC EC K F S L +H +H + R
Sbjct: 4 ACPECPKRFMRSDHLSKHITLHELLGEER 32
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Length = 29
Score = 34.9 bits (80), Expect = 0.004
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 31 RYACKYCGKVFPRSANLTRHLRTHTGEQ 58
++AC C K F RS +LT H+ H ++
Sbjct: 2 KFACPECPKRFMRSDHLTLHILLHENKK 29
Score = 34.9 bits (80), Expect = 0.004
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 762 RYACKYCGKVFPRSANLTRHLRTHTGEQ 789
++AC C K F RS +LT H+ H ++
Sbjct: 2 KFACPECPKRFMRSDHLTLHILLHENKK 29
Score = 29.1 bits (65), Expect = 0.38
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 89 FKCPLCDRCFGQQTNLDRHLKKHEAD 114
F CP C + F + +L H+ HE
Sbjct: 3 FACPECPKRFMRSDHLTLHILLHENK 28
Score = 29.1 bits (65), Expect = 0.38
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 820 FKCPLCDRCFGQQTNLDRHLKKHEAD 845
F CP C + F + +L H+ HE
Sbjct: 3 FACPECPKRFMRSDHLTLHILLHENK 28
Score = 29.1 bits (65), Expect = 0.47
Identities = 10/24 (41%), Positives = 11/24 (45%)
Query: 224 KFPCENCTKVFSDPSNLQRHIRTH 247
KF C C K F +L HI H
Sbjct: 2 KFACPECPKRFMRSDHLTLHILLH 25
Score = 26.4 bits (58), Expect = 4.3
Identities = 11/26 (42%), Positives = 13/26 (50%)
Query: 255 ACQECGKTFATSSGLKQHTHIHSSVK 280
AC EC K F S L H +H + K
Sbjct: 4 ACPECPKRFMRSDHLTLHILLHENKK 29
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 35.2 bits (80), Expect = 0.004
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 87 KPFKCPLCDRCFGQQTNLDRHLKKHEAD 114
KP+KCP C + NL+ HL+KH +
Sbjct: 8 KPYKCPQCSYASAIKANLNVHLRKHTGE 35
Score = 35.2 bits (80), Expect = 0.004
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 818 KPFKCPLCDRCFGQQTNLDRHLKKHEAD 845
KP+KCP C + NL+ HL+KH +
Sbjct: 8 KPYKCPQCSYASAIKANLNVHLRKHTGE 35
Score = 31.3 bits (70), Expect = 0.086
Identities = 15/35 (42%), Positives = 18/35 (51%)
Query: 24 SSKTTKDRYACKYCGKVFPRSANLTRHLRTHTGEQ 58
SS ++ Y C C ANL HLR HTGE+
Sbjct: 2 SSGSSGKPYKCPQCSYASAIKANLNVHLRKHTGEK 36
Score = 31.3 bits (70), Expect = 0.086
Identities = 15/35 (42%), Positives = 18/35 (51%)
Query: 755 SSKTTKDRYACKYCGKVFPRSANLTRHLRTHTGEQ 789
SS ++ Y C C ANL HLR HTGE+
Sbjct: 2 SSGSSGKPYKCPQCSYASAIKANLNVHLRKHTGEK 36
Score = 27.9 bits (61), Expect = 1.4
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 55 TGEQPYKCKYCERSFSISSNLQRHVRNIHNKEK 87
+ +PYKC C + +I +NL H+R H EK
Sbjct: 5 SSGKPYKCPQCSYASAIKANLNVHLRK-HTGEK 36
Score = 27.9 bits (61), Expect = 1.4
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 786 TGEQPYKCKYCERSFSISSNLQRHVRNIHNKEK 818
+ +PYKC C + +I +NL H+R H EK
Sbjct: 5 SSGKPYKCPQCSYASAIKANLNVHLRK-HTGEK 36
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 45
Score = 35.3 bits (80), Expect = 0.004
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 83 HNKEKPFKCPLCDRCFGQQTNLDRHLKKHE 112
+ EKP+ CP+C F ++ + H++ H+
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHD 34
Score = 35.3 bits (80), Expect = 0.004
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 814 HNKEKPFKCPLCDRCFGQQTNLDRHLKKHE 843
+ EKP+ CP+C F ++ + H++ H+
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHD 34
Score = 31.4 bits (70), Expect = 0.098
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 22 GSSSKTTKDRYACKYCGKVFPRSANLTRHLRTHTG 56
GSS + + Y+C CG F R ++ H+R+H G
Sbjct: 1 GSSGSSGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 35
Score = 31.4 bits (70), Expect = 0.098
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 753 GSSSKTTKDRYACKYCGKVFPRSANLTRHLRTHTG 787
GSS + + Y+C CG F R ++ H+R+H G
Sbjct: 1 GSSGSSGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 35
Score = 30.3 bits (67), Expect = 0.27
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 54 HTGEQPYKCKYCERSFSISSNLQRHVR 80
+GE+PY C C F + HVR
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVR 31
Score = 30.3 bits (67), Expect = 0.27
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 785 HTGEQPYKCKYCERSFSISSNLQRHVR 811
+GE+PY C C F + HVR
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVR 31
Score = 28.7 bits (63), Expect = 0.88
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 276 HSSVKPFRCEVCHKAYTQFSNLCRHKRMH 304
S KP+ C VC + + + H R H
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSH 33
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 96
Score = 36.8 bits (84), Expect = 0.004
Identities = 12/63 (19%), Positives = 25/63 (39%), Gaps = 2/63 (3%)
Query: 29 KDRYACKYCGKVFPRS-ANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEK 87
K +C C V ++ L +H+ ++ + C +C + + ++ HV HN
Sbjct: 32 KGSVSCPTCQAVGRKTIEGLKKHMENC-KQEMFTCHHCGKQLRSLAGMKYHVMANHNSLP 90
Query: 88 PFK 90
Sbjct: 91 SGP 93
Score = 36.8 bits (84), Expect = 0.004
Identities = 12/63 (19%), Positives = 25/63 (39%), Gaps = 2/63 (3%)
Query: 760 KDRYACKYCGKVFPRS-ANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEK 818
K +C C V ++ L +H+ ++ + C +C + + ++ HV HN
Sbjct: 32 KGSVSCPTCQAVGRKTIEGLKKHMENC-KQEMFTCHHCGKQLRSLAGMKYHVMANHNSLP 90
Query: 819 PFK 821
Sbjct: 91 SGP 93
Score = 36.4 bits (83), Expect = 0.005
Identities = 13/60 (21%), Positives = 21/60 (35%), Gaps = 3/60 (5%)
Query: 224 KFPCENCTKV-FSDPSNLQRHIRTHHVGARQHACQECGKTFATSSGLKQHTHIHSSVKPF 282
C C V L++H+ C CGK + +G+K H + + P
Sbjct: 34 SVSCPTCQAVGRKTIEGLKKHMENC--KQEMFTCHHCGKQLRSLAGMKYHVMANHNSLPS 91
Score = 31.0 bits (69), Expect = 0.45
Identities = 10/53 (18%), Positives = 17/53 (32%), Gaps = 1/53 (1%)
Query: 197 QYRCESCSQ-TFCWRPHLNFHQAQVHGRKFPCENCTKVFSDPSNLQRHIRTHH 248
C +C L H F C +C K + ++ H+ +H
Sbjct: 34 SVSCPTCQAVGRKTIEGLKKHMENCKQEMFTCHHCGKQLRSLAGMKYHVMANH 86
Score = 27.5 bits (60), Expect = 7.7
Identities = 12/60 (20%), Positives = 22/60 (36%), Gaps = 3/60 (5%)
Query: 60 YKCKYCER-SFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKHEADDGSG 118
C C+ L++H+ N K++ F C C + + H+ + SG
Sbjct: 35 VSCPTCQAVGRKTIEGLKKHMENC--KQEMFTCHHCGKQLRSLAGMKYHVMANHNSLPSG 92
Score = 27.5 bits (60), Expect = 7.7
Identities = 12/60 (20%), Positives = 22/60 (36%), Gaps = 3/60 (5%)
Query: 791 YKCKYCER-SFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKHEADDGSG 849
C C+ L++H+ N K++ F C C + + H+ + SG
Sbjct: 35 VSCPTCQAVGRKTIEGLKKHMENC--KQEMFTCHHCGKQLRSLAGMKYHVMANHNSLPSG 92
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 38.7 bits (89), Expect = 0.010
Identities = 28/297 (9%), Positives = 63/297 (21%), Gaps = 121/297 (40%)
Query: 740 FQEILTSQNNAVN---GSSSKTT----KDRYACKYCGKVFPRSANLTRHLRTHTGEQPYK 792
F +L+ Q V + + + + R + Q +
Sbjct: 68 FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA 127
Query: 793 CKYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKHEADDGSGLVS 852
KY N+ R +P+ L + L + +
Sbjct: 128 -KY---------NVSR--------LQPY------------LKLRQALLELRPAKNVLIDG 157
Query: 853 MADSPESS------NENEREDAYFDEIRSF---MGKVTYSGDVAYNQENLYT-------- 895
+ S ++ + + +I F + V + L
Sbjct: 158 VLGSGKTWVALDVCLSYKVQCKMDFKI--FWLNLKNCNSPETVLEMLQKLLYQIDPNWTS 215
Query: 896 ----GTNPPSP---------------------LI--DVKD-------D------------ 909
+N L+ +V++ +
Sbjct: 216 RSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFK 275
Query: 910 ----------------DDNESEFLSDETEDTF---IPQDFRKSPSEIENGSPISYSL 947
D + DE + + + P E+ +P S+
Sbjct: 276 QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSI 332
Score = 37.9 bits (87), Expect = 0.017
Identities = 57/387 (14%), Positives = 96/387 (24%), Gaps = 134/387 (34%)
Query: 50 HLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLK 109
H+ TGE Y+ K I + E F D C Q L
Sbjct: 6 HMDFETGEHQYQYK------DI----------LSVFEDAFVDNF-D-CKDVQDMPKSILS 47
Query: 110 KHEADDGSGLVSMADSPESSNENEREDAYFDEIRS--------FMGKVTYSGDVAYN--Q 159
K E D ++ S + F + S F+ +V + Y
Sbjct: 48 KEEIDH---II------MSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVL---RINYKFLM 95
Query: 160 ENLYTGNNPPSPLIDVKDDDDNELEDHLITGHRYPPDQ-YRCESCSQTFCWRPHLNFHQA 218
+ T PS + + + + L + + R + P+L QA
Sbjct: 96 SPIKTEQRQPSMMTRMYIEQRDRLYN---DNQVFAKYNVSRLQ---------PYLKLRQA 143
Query: 219 ----------QVHG----------------RKFPCENCTKVF-------SDPSNLQRHIR 245
+ G K C+ K+F + P + ++
Sbjct: 144 LLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ 203
Query: 246 THHVGARQHACQECGKTFATSSGLKQHTHIHSSVKPFRCEVCHKAYTQFSNLCRHKRMHA 305
+ HSS R H + L + K +
Sbjct: 204 KLLYQIDPNWTSRSD---------------HSSNIKLR---IHSIQAELRRLLKSKP-YE 244
Query: 306 NC--------------RMQIKCVKC-----DQSFSTVTSLSKHKRFC-DSTTPGTTPSGQ 345
NC + C K + + S + D + TP
Sbjct: 245 NCLLVLLNVQNAKAWNAFNLSC-KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV 303
Query: 346 NSLSA--MSHQTPGIP------NPYLM 364
SL + + +P NP +
Sbjct: 304 KSLLLKYLDCRPQDLPREVLTTNPRRL 330
Score = 31.7 bits (71), Expect = 1.4
Identities = 28/153 (18%), Positives = 46/153 (30%), Gaps = 44/153 (28%)
Query: 781 HLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLK 840
H+ TGE Y+ K I + E F D C Q L
Sbjct: 6 HMDFETGEHQYQYK------DI----------LSVFEDAFVDNF-D-CKDVQDMPKSILS 47
Query: 841 KHEADDGSGLVSMADSPESSNENEREDAYFDEIRS--------FMGKVTYSGDVAYN--Q 890
K E D ++ S + F + S F+ +V + Y
Sbjct: 48 KEEIDH---II------MSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVL---RINYKFLM 95
Query: 891 ENLYTGTNPPSPL----IDVKDDDDNESEFLSD 919
+ T PS + I+ +D N+++ +
Sbjct: 96 SPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAK 128
Score = 30.2 bits (67), Expect = 4.5
Identities = 12/50 (24%), Positives = 19/50 (38%), Gaps = 5/50 (10%)
Query: 904 IDVKDDDDNESEFLSDETEDTFIPQDFRKSPSEIENGSPISYSLKTKGDQ 953
D KD D LS E D I S + + ++L +K ++
Sbjct: 33 FDCKDVQDMPKSILSKEEIDHII-----MSKDAVSGTLRLFWTLLSKQEE 77
>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 33.7 bits (76), Expect = 0.014
Identities = 14/37 (37%), Positives = 18/37 (48%)
Query: 21 NGSSSKTTKDRYACKYCGKVFPRSANLTRHLRTHTGE 57
+ SS K C+ CGK+F S+ L H H GE
Sbjct: 2 SSGSSGAAKTTSECQECGKIFRHSSLLIEHQALHAGE 38
Score = 33.7 bits (76), Expect = 0.014
Identities = 14/37 (37%), Positives = 18/37 (48%)
Query: 752 NGSSSKTTKDRYACKYCGKVFPRSANLTRHLRTHTGE 788
+ SS K C+ CGK+F S+ L H H GE
Sbjct: 2 SSGSSGAAKTTSECQECGKIFRHSSLLIEHQALHAGE 38
Score = 29.9 bits (66), Expect = 0.37
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 256 CQECGKTFATSSGLKQHTHIHS 277
CQECGK F SS L +H +H+
Sbjct: 15 CQECGKIFRHSSLLIEHQALHA 36
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc
finger, transcription; NMR {Homo sapiens}
Length = 29
Score = 32.4 bits (73), Expect = 0.033
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 34 CKYCGKVFPRSANLTRHLRTHTGEQ 58
C CGK F ++++L H+R HTGE+
Sbjct: 5 CVMCGKAFTQASSLIAHVRQHTGEK 29
Score = 32.4 bits (73), Expect = 0.033
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 765 CKYCGKVFPRSANLTRHLRTHTGEQ 789
C CGK F ++++L H+R HTGE+
Sbjct: 5 CVMCGKAFTQASSLIAHVRQHTGEK 29
Score = 30.5 bits (68), Expect = 0.16
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 280 KPFRCEVCHKAYTQFSNLCRHKRMH 304
KP +C +C KA+TQ S+L H R H
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQH 25
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 32.5 bits (73), Expect = 0.037
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 248 HVGARQHACQECGKTFATSSGLKQHTHIHS 277
+ C +C KTF+ S L QH IH+
Sbjct: 7 GQKEKCFKCNKCEKTFSCSKYLTQHERIHT 36
Score = 32.1 bits (72), Expect = 0.052
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 53 THTGEQPYKCKYCERSFSISSNLQRHVR 80
+ E+ +KC CE++FS S L +H R
Sbjct: 6 SGQKEKCFKCNKCEKTFSCSKYLTQHER 33
Score = 32.1 bits (72), Expect = 0.052
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 784 THTGEQPYKCKYCERSFSISSNLQRHVR 811
+ E+ +KC CE++FS S L +H R
Sbjct: 6 SGQKEKCFKCNKCEKTFSCSKYLTQHER 33
Score = 29.4 bits (65), Expect = 0.57
Identities = 13/32 (40%), Positives = 16/32 (50%)
Query: 24 SSKTTKDRYACKYCGKVFPRSANLTRHLRTHT 55
SS + + C C K F S LT+H R HT
Sbjct: 5 SSGQKEKCFKCNKCEKTFSCSKYLTQHERIHT 36
Score = 29.4 bits (65), Expect = 0.57
Identities = 13/32 (40%), Positives = 16/32 (50%)
Query: 755 SSKTTKDRYACKYCGKVFPRSANLTRHLRTHT 786
SS + + C C K F S LT+H R HT
Sbjct: 5 SSGQKEKCFKCNKCEKTFSCSKYLTQHERIHT 36
Score = 27.9 bits (61), Expect = 1.5
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 276 HSSVKPFRCEVCHKAYTQFSNLCRHKRMHA 305
K F+C C K ++ L +H+R+H
Sbjct: 7 GQKEKCFKCNKCEKTFSCSKYLTQHERIHT 36
Score = 27.1 bits (59), Expect = 3.3
Identities = 13/36 (36%), Positives = 17/36 (47%)
Query: 83 HNKEKPFKCPLCDRCFGQQTNLDRHLKKHEADDGSG 118
KEK FKC C++ F L +H + H SG
Sbjct: 7 GQKEKCFKCNKCEKTFSCSKYLTQHERIHTRGVKSG 42
Score = 27.1 bits (59), Expect = 3.3
Identities = 13/36 (36%), Positives = 17/36 (47%)
Query: 814 HNKEKPFKCPLCDRCFGQQTNLDRHLKKHEADDGSG 849
KEK FKC C++ F L +H + H SG
Sbjct: 7 GQKEKCFKCNKCEKTFSCSKYLTQHERIHTRGVKSG 42
>3ray_A PR domain-containing protein 11; structural genomics consortium,
SGC, histone methylation, Zn transcriptional regulation,
chromatin, transcription; 1.73A {Homo sapiens}
Length = 237
Score = 35.6 bits (81), Expect = 0.053
Identities = 14/97 (14%), Positives = 34/97 (35%), Gaps = 4/97 (4%)
Query: 20 VNGSSSKTTKDRYACKYCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHV 79
V S + ++ A ++ +++ R+ R +R + + + + S H
Sbjct: 144 VVISREEREQNLLAFQHSERIYFRA---CRDIRPGEWLRVWYSEDYMKRLHSMSQETIH- 199
Query: 80 RNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKHEADDG 116
RN+ EK + ++ +L + G
Sbjct: 200 RNLARGEKRLQREKSEQVLDNPEDLRGPIHLSVLRQG 236
Score = 35.6 bits (81), Expect = 0.053
Identities = 14/97 (14%), Positives = 34/97 (35%), Gaps = 4/97 (4%)
Query: 751 VNGSSSKTTKDRYACKYCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHV 810
V S + ++ A ++ +++ R+ R +R + + + + S H
Sbjct: 144 VVISREEREQNLLAFQHSERIYFRA---CRDIRPGEWLRVWYSEDYMKRLHSMSQETIH- 199
Query: 811 RNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKHEADDG 847
RN+ EK + ++ +L + G
Sbjct: 200 RNLARGEKRLQREKSEQVLDNPEDLRGPIHLSVLRQG 236
Score = 30.9 bits (69), Expect = 1.5
Identities = 7/52 (13%), Positives = 16/52 (30%), Gaps = 1/52 (1%)
Query: 225 FPCENCTKVFSDPSNLQRHIRTHHVGARQHACQECGKTFATSSGLKQHTHIH 276
+ E+ K S H G ++ ++ + L+ H+
Sbjct: 181 WYSEDYMKRLHSMSQETIHRNLAR-GEKRLQREKSEQVLDNPEDLRGPIHLS 231
Score = 30.6 bits (68), Expect = 1.9
Identities = 6/49 (12%), Positives = 15/49 (30%)
Query: 256 CQECGKTFATSSGLKQHTHIHSSVKPFRCEVCHKAYTQFSNLCRHKRMH 304
++ K + S H ++ K + E + +L +
Sbjct: 183 SEDYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIHLS 231
Score = 29.8 bits (66), Expect = 3.4
Identities = 6/50 (12%), Positives = 15/50 (30%)
Query: 9 FQEILTSQNNAVNGSSSKTTKDRYACKYCGKVFPRSANLTRHLRTHTGEQ 58
+ + L S + + + R + +V +L + Q
Sbjct: 186 YMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIHLSVLRQ 235
Score = 29.8 bits (66), Expect = 3.4
Identities = 6/50 (12%), Positives = 15/50 (30%)
Query: 740 FQEILTSQNNAVNGSSSKTTKDRYACKYCGKVFPRSANLTRHLRTHTGEQ 789
+ + L S + + + R + +V +L + Q
Sbjct: 186 YMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIHLSVLRQ 235
Score = 29.8 bits (66), Expect = 4.3
Identities = 5/27 (18%), Positives = 12/27 (44%)
Query: 223 RKFPCENCTKVFSDPSNLQRHIRTHHV 249
++ E +V +P +L+ I +
Sbjct: 207 KRLQREKSEQVLDNPEDLRGPIHLSVL 233
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic}
SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Length = 30
Score = 31.7 bits (71), Expect = 0.056
Identities = 14/30 (46%), Positives = 22/30 (73%)
Query: 58 QPYKCKYCERSFSISSNLQRHVRNIHNKEK 87
+ Y+C+YCE + SSNL+ H++ H+KEK
Sbjct: 1 KTYQCQYCEFRSADSSNLKTHIKTKHSKEK 30
Score = 31.7 bits (71), Expect = 0.056
Identities = 14/30 (46%), Positives = 22/30 (73%)
Query: 789 QPYKCKYCERSFSISSNLQRHVRNIHNKEK 818
+ Y+C+YCE + SSNL+ H++ H+KEK
Sbjct: 1 KTYQCQYCEFRSADSSNLKTHIKTKHSKEK 30
>2fom_A Polyprotein; flavivirus, NS3 protease, NS2B cofactor, viral
protein-prote complex; 1.50A {Dengue virus 2}
Length = 62
Score = 32.3 bits (73), Expect = 0.063
Identities = 9/43 (20%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Query: 883 SGDVAYNQENLYTGTNPPSPLIDVKDDDDNESEFLSDETEDTF 925
+ DV + ++ +G+ SP++ + +D ++E E T
Sbjct: 14 AADVRWEEQAEISGS---SPILSITISEDGSMSIKNEEEEQTL 53
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha,
coiled coil, cytoplasm, metal- binding, UBL conjugation,
UBL conjugation pathway; 2.20A {Homo sapiens}
Length = 170
Score = 33.5 bits (76), Expect = 0.14
Identities = 10/64 (15%), Positives = 20/64 (31%), Gaps = 7/64 (10%)
Query: 34 CKYCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKCPL 93
C C + F + ++ H+ + C C S + + IH++ P
Sbjct: 113 CPQCQRPFQKF-HINIHILKDCPRRQVSCDNCAASMA------FEDKEIHDQNCPLALEH 165
Query: 94 CDRC 97
Sbjct: 166 HHHH 169
Score = 33.5 bits (76), Expect = 0.14
Identities = 10/64 (15%), Positives = 20/64 (31%), Gaps = 7/64 (10%)
Query: 765 CKYCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKCPL 824
C C + F + ++ H+ + C C S + + IH++ P
Sbjct: 113 CPQCQRPFQKF-HINIHILKDCPRRQVSCDNCAASMA------FEDKEIHDQNCPLALEH 165
Query: 825 CDRC 828
Sbjct: 166 HHHH 169
>1njq_A Superman protein; zinc-finger, peptide-zinc complex,
beta-BETA-ALFA motif, metal binding protein; NMR
{Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A
Length = 39
Score = 30.5 bits (69), Expect = 0.15
Identities = 9/28 (32%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 60 YKCKYCERSFSISSNLQRHVRNIHNKEK 87
Y C +C+R F + L H N+H +++
Sbjct: 7 YTCSFCKREFRSAQALGGH-MNVHRRDR 33
Score = 30.5 bits (69), Expect = 0.15
Identities = 9/28 (32%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 791 YKCKYCERSFSISSNLQRHVRNIHNKEK 818
Y C +C+R F + L H N+H +++
Sbjct: 7 YTCSFCKREFRSAQALGGH-MNVHRRDR 33
Score = 27.0 bits (60), Expect = 2.6
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 252 RQHACQECGKTFATSSGLKQHTHIH 276
R + C C + F ++ L H ++H
Sbjct: 5 RSYTCSFCKREFRSAQALGGHMNVH 29
Score = 25.9 bits (57), Expect = 6.3
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 32 YACKYCGKVFPRSANLTRHLRTH 54
Y C +C + F + L H+ H
Sbjct: 7 YTCSFCKREFRSAQALGGHMNVH 29
Score = 25.9 bits (57), Expect = 6.3
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 763 YACKYCGKVFPRSANLTRHLRTH 785
Y C +C + F + L H+ H
Sbjct: 7 YTCSFCKREFRSAQALGGHMNVH 29
>3u1j_A Serine protease subunit NS2B; serine protease, ER MEM
hydrolase-hydrolase inhibitor complex; 1.80A {Dengue
virus 3} PDB: 3u1i_A
Length = 51
Score = 31.2 bits (70), Expect = 0.15
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
Query: 883 SGDVAYNQENLYTGTNPPSPLIDVKDDDDNESEFLSDETEDTF 925
+ DV + +E TG S + + DDD DETE+
Sbjct: 12 AADVTWEEEAEQTGV---SHNLMITVDDDGTMRIKDDETENIL 51
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR
{Xenopus laevis} SCOP: g.37.1.1
Length = 27
Score = 30.5 bits (68), Expect = 0.15
Identities = 14/25 (56%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Query: 60 YKCKYCERSFSISSNLQRHVRNIHN 84
YKC CERSF S L RH R +H
Sbjct: 2 YKCGLCERSFVEKSALSRHQR-VHK 25
Score = 30.5 bits (68), Expect = 0.15
Identities = 14/25 (56%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Query: 791 YKCKYCERSFSISSNLQRHVRNIHN 815
YKC CERSF S L RH R +H
Sbjct: 2 YKCGLCERSFVEKSALSRHQR-VHK 25
Score = 29.3 bits (65), Expect = 0.31
Identities = 9/25 (36%), Positives = 18/25 (72%)
Query: 282 FRCEVCHKAYTQFSNLCRHKRMHAN 306
++C +C +++ + S L RH+R+H N
Sbjct: 2 YKCGLCERSFVEKSALSRHQRVHKN 26
Score = 28.2 bits (62), Expect = 0.84
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 89 FKCPLCDRCFGQQTNLDRHLKKHE 112
+KC LC+R F +++ L RH + H+
Sbjct: 2 YKCGLCERSFVEKSALSRHQRVHK 25
Score = 28.2 bits (62), Expect = 0.84
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 820 FKCPLCDRCFGQQTNLDRHLKKHE 843
+KC LC+R F +++ L RH + H+
Sbjct: 2 YKCGLCERSFVEKSALSRHQRVHK 25
>2cvc_A Cytochrome CC3, high-molecular-weight cytochrome C precursor;
electron transport; HET: HEM; 2.00A {Desulfovibrio
vulgaris} SCOP: a.138.1.1 PDB: 1gws_A* 1h29_A*
Length = 545
Score = 34.8 bits (77), Expect = 0.15
Identities = 13/133 (9%), Positives = 29/133 (21%), Gaps = 8/133 (6%)
Query: 189 TGHRYPPDQYRCESCSQTFCWRPHLNFHQAQVHGRKFPCENCTKVFSDPSNLQ-----RH 243
+ + + P + + +
Sbjct: 393 VEAGALLNLKAEQRSQVAASMLSARPQPKGTFDLNDIPEKVVIGSIAKEYQPSEFPHRKI 452
Query: 244 IRTHHVGARQHACQECGKTFATSSGLKQHTHIHSSVKPFRCEVCHKAYTQFSNLCRHKRM 303
++T G + + H + +S+ P +C CH R
Sbjct: 453 VKTLIAGIGEDKLAATFHIEKGTLCQGCHHNSPASLTPPKCASCHGKPFDADRGDRPGLK 512
Query: 304 HANCRMQIKCVKC 316
A +C+ C
Sbjct: 513 AA---YHQQCMGC 522
Score = 31.3 bits (68), Expect = 2.0
Identities = 23/151 (15%), Positives = 36/151 (23%), Gaps = 9/151 (5%)
Query: 206 TFCWRPHLNFHQ---AQVHGRKFPCENCTKV-FSDPSNLQRHIRTHHVGARQHACQEC-G 260
F + H H R C C V + S + + H +C C
Sbjct: 295 AFDHKAHEAKANDCRTCHHVRIDTCTACHTVNGTADSKFVQLEKAMHQPDSMRSCVGCHN 354
Query: 261 KTFATSSGLKQHTHIHSSVKPFRCEVCHKA----YTQFSNLCRHKRMHANCRMQIKCVKC 316
+ H I + +C VCH A + + A R Q+
Sbjct: 355 TRVQQPTCAGCHGFIKPTKSDAQCGVCHVAAPGFDAKQVEAGALLNLKAEQRSQVAASML 414
Query: 317 DQSFSTVTSLSKHKRFCDSTTPGTTPSGQNS 347
+ + Q S
Sbjct: 415 SARPQPKGTFDLNDIPEKVVIGSIAKEYQPS 445
>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 32
Score = 30.4 bits (68), Expect = 0.17
Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 86 EKPFKC--PLCDRCFGQQTNLDRHLKKHEA 113
++P+ C P CD+ F + +L RH K H+
Sbjct: 1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQE 30
Score = 30.4 bits (68), Expect = 0.17
Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 817 EKPFKC--PLCDRCFGQQTNLDRHLKKHEA 844
++P+ C P CD+ F + +L RH K H+
Sbjct: 1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQE 30
Score = 28.0 bits (62), Expect = 1.0
Identities = 10/26 (38%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Query: 32 YACKY--CGKVFPRSANLTRHLRTHT 55
Y+C + C K F R+ +L RH ++H
Sbjct: 4 YSCDHPGCDKAFVRNHDLIRHKKSHQ 29
Score = 28.0 bits (62), Expect = 1.0
Identities = 10/26 (38%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Query: 763 YACKY--CGKVFPRSANLTRHLRTHT 786
Y+C + C K F R+ +L RH ++H
Sbjct: 4 YSCDHPGCDKAFVRNHDLIRHKKSHQ 29
Score = 28.0 bits (62), Expect = 1.3
Identities = 10/29 (34%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 280 KPFRCEV--CHKAYTQFSNLCRHKRMHAN 306
+P+ C+ C KA+ + +L RHK+ H
Sbjct: 2 RPYSCDHPGCDKAFVRNHDLIRHKKSHQE 30
Score = 25.4 bits (55), Expect = 9.4
Identities = 9/31 (29%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
Query: 57 EQPYKCKY--CERSFSISSNLQRHVRNIHNK 85
++PY C + C+++F + +L RH + H +
Sbjct: 1 DRPYSCDHPGCDKAFVRNHDLIRH-KKSHQE 30
Score = 25.4 bits (55), Expect = 9.4
Identities = 9/31 (29%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
Query: 788 EQPYKCKY--CERSFSISSNLQRHVRNIHNK 816
++PY C + C+++F + +L RH + H +
Sbjct: 1 DRPYSCDHPGCDKAFVRNHDLIRH-KKSHQE 30
>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2
zinc fingers, beta-BETA-alpha, solution structure; NMR
{Saccharomyces cerevisiae}
Length = 64
Score = 30.8 bits (69), Expect = 0.23
Identities = 12/53 (22%), Positives = 20/53 (37%), Gaps = 8/53 (15%)
Query: 228 ENCTKVFSDPSNLQRHIRTHHVGARQH------ACQ--ECGKTFATSSGLKQH 272
+ C + S +LQRH+ HV AC +C ++ + H
Sbjct: 7 KECPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNH 59
>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 75
Score = 31.1 bits (70), Expect = 0.25
Identities = 14/69 (20%), Positives = 25/69 (36%), Gaps = 4/69 (5%)
Query: 44 SANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTN 103
S+ + H T + C++C+ SI L+ H + + C C R +
Sbjct: 2 SSGSSGHEETECPLRLAVCQHCDLELSI-LKLKEHED--YCGARTELCGNCGR-NVLVKD 57
Query: 104 LDRHLKKHE 112
L H +
Sbjct: 58 LKTHPEVCG 66
Score = 31.1 bits (70), Expect = 0.25
Identities = 14/69 (20%), Positives = 25/69 (36%), Gaps = 4/69 (5%)
Query: 775 SANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTN 834
S+ + H T + C++C+ SI L+ H + + C C R +
Sbjct: 2 SSGSSGHEETECPLRLAVCQHCDLELSI-LKLKEHED--YCGARTELCGNCGR-NVLVKD 57
Query: 835 LDRHLKKHE 843
L H +
Sbjct: 58 LKTHPEVCG 66
Score = 28.4 bits (63), Expect = 2.0
Identities = 15/71 (21%), Positives = 20/71 (28%), Gaps = 6/71 (8%)
Query: 266 SSGLKQHTHIHSSVKPFRCEVCHKAYTQFSNLCRHKRMHANC-RMQIKCVKCDQSFSTVT 324
SSG H ++ C+ C L H C C C ++ V
Sbjct: 2 SSGSSGHEETECPLRLAVCQHCDLEL-SILKLKEH---EDYCGARTELCGNCGRNV-LVK 56
Query: 325 SLSKHKRFCDS 335
L H C
Sbjct: 57 DLKTHPEVCGR 67
>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 30.2 bits (67), Expect = 0.30
Identities = 10/35 (28%), Positives = 20/35 (57%)
Query: 24 SSKTTKDRYACKYCGKVFPRSANLTRHLRTHTGEQ 58
SS + + + C+ CG++F + +L H H G++
Sbjct: 5 SSGSREKSHQCRECGEIFFQYVSLIEHQVLHMGQK 39
Score = 30.2 bits (67), Expect = 0.30
Identities = 10/35 (28%), Positives = 20/35 (57%)
Query: 755 SSKTTKDRYACKYCGKVFPRSANLTRHLRTHTGEQ 789
SS + + + C+ CG++F + +L H H G++
Sbjct: 5 SSGSREKSHQCRECGEIFFQYVSLIEHQVLHMGQK 39
Score = 27.9 bits (61), Expect = 1.8
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 252 RQHACQECGKTFATSSGLKQHTHIHSSVK 280
+ H C+ECG+ F L +H +H K
Sbjct: 11 KSHQCRECGEIFFQYVSLIEHQVLHMGQK 39
Score = 27.5 bits (60), Expect = 2.3
Identities = 7/25 (28%), Positives = 14/25 (56%)
Query: 280 KPFRCEVCHKAYTQFSNLCRHKRMH 304
K +C C + + Q+ +L H+ +H
Sbjct: 11 KSHQCRECGEIFFQYVSLIEHQVLH 35
Score = 25.9 bits (56), Expect = 7.6
Identities = 11/35 (31%), Positives = 15/35 (42%)
Query: 84 NKEKPFKCPLCDRCFGQQTNLDRHLKKHEADDGSG 118
++EK +C C F Q +L H H SG
Sbjct: 8 SREKSHQCRECGEIFFQYVSLIEHQVLHMGQKNSG 42
Score = 25.9 bits (56), Expect = 7.6
Identities = 11/35 (31%), Positives = 15/35 (42%)
Query: 815 NKEKPFKCPLCDRCFGQQTNLDRHLKKHEADDGSG 849
++EK +C C F Q +L H H SG
Sbjct: 8 SREKSHQCRECGEIFFQYVSLIEHQVLHMGQKNSG 42
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid
cyclase fold, DDXXXXD motif, NDXXSXXXE MOT
methylisoborneol biosynthesis; HET: GST; 1.80A
{Streptomyces coelicolor} PDB: 3v1x_A*
Length = 433
Score = 33.6 bits (76), Expect = 0.37
Identities = 18/122 (14%), Positives = 28/122 (22%), Gaps = 19/122 (15%)
Query: 595 IGKDESVINKSSPTPPDDPVEESKRSPTPQIVSRSPSPIKNRSPSPPVSKANTTPMAYPK 654
+G + SS P P+ + S + + P V P P
Sbjct: 1 MGSSHHHHHHSSGLVPRGS---HMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPA 57
Query: 655 PIHPMSLEAFFPLKNFGSRSYPPFPP---------PHPTDPHERLCPPSLPGFNPQRSFP 705
+P P G P + R P P P +
Sbjct: 58 AGNP-------PDTVTGDSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGR 110
Query: 706 FL 707
+
Sbjct: 111 AV 112
>3ucp_A UNDA; beta-barrel, C-type cytochrome, electron transport, C-type H
cell surface, transport protein; HET: HEC; 1.76A
{Shewanella SP} PDB: 3ufh_A* 3ufk_A*
Length = 874
Score = 33.5 bits (74), Expect = 0.45
Identities = 39/319 (12%), Positives = 84/319 (26%), Gaps = 25/319 (7%)
Query: 18 NAVNGSSSKTTKDRYACKYCGKVFPRSANLTRHLRTHTGE-QPYKCKYCERSFSISSNLQ 76
++S AC C + + L G+ ++
Sbjct: 371 KGPVDAASFKHHKGLACASCHMSGFNPVDNSEWLTPPEGQKDRGFVGNYFHYYATPEIDG 430
Query: 77 RHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKHEADDGSGLVSMADSPESSNENERED 136
N+ + + C C G++ + HL K A + + + +
Sbjct: 431 IPGVNLVHVFQNGGCASCHAEQGEEGSAKYHLAKANATKLLRTEYAYKLENGTFDVAKGE 490
Query: 137 AYFD--------EIRSFMGKVTYSGDVAYNQENLYTGNNPPSPLIDVKDDDDNELEDHLI 188
F + K + A+N G P + + ++ + +
Sbjct: 491 LTFTVNWHSDVAPHQDPKVKEFWVSLTAFNGTEYTMGPRPSNGTLGRSENRISVNLAKVE 550
Query: 189 TGHR-----------YPPDQYRCESCSQTFCWRPHLNFHQAQVHGRKFPCENCTKVFSDP 237
T Y + + + ++ ++ + + G+ C N ++
Sbjct: 551 TNANLTAVPNGSKVTYTLTGIKAVIGTSSVPYKQIVSIGKGFMDGKLLICANSAELDPTM 610
Query: 238 SNLQRHIRTHHVGARQHACQECGKTFATSSGLKQHTHIHSSVKPFRCEVCHKAYTQFSNL 297
I + A + + S+ T + +C CH FS
Sbjct: 611 DA---AIDCSNTEAPIYEVIVGSNKASFSADASNVTARSIVISEAKCANCHGEKADFSA- 666
Query: 298 CRHKRMHANCRMQIKCVKC 316
H HA + C C
Sbjct: 667 -SHALTHAADKPDNSCGTC 684
>2yuc_A TNF receptor-associated factor 4; ZF-TRAF, cysteine-rich domain
associated with ring and TRAF domains protein 1,
malignant 62; NMR {Homo sapiens}
Length = 76
Score = 30.3 bits (68), Expect = 0.47
Identities = 11/45 (24%), Positives = 18/45 (40%), Gaps = 2/45 (4%)
Query: 37 CGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRN 81
C R +L HL+ ++ KC++C FS + H
Sbjct: 23 CPMKLSRR-DLPAHLQHDCPKRRLKCEFCGCDFS-GEAYESHEGM 65
Score = 30.3 bits (68), Expect = 0.47
Identities = 11/45 (24%), Positives = 18/45 (40%), Gaps = 2/45 (4%)
Query: 768 CGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRN 812
C R +L HL+ ++ KC++C FS + H
Sbjct: 23 CPMKLSRR-DLPAHLQHDCPKRRLKCEFCGCDFS-GEAYESHEGM 65
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA,
metal-binding, transcription; NMR {Mus musculus}
Length = 28
Score = 29.0 bits (64), Expect = 0.52
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 32 YACKYCGKVFPRSANLTRHLRTHTG 56
Y+C CGK F + H R HTG
Sbjct: 4 YSCSVCGKRFSLKHQMETHYRVHTG 28
Score = 29.0 bits (64), Expect = 0.52
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 763 YACKYCGKVFPRSANLTRHLRTHTG 787
Y+C CGK F + H R HTG
Sbjct: 4 YSCSVCGKRFSLKHQMETHYRVHTG 28
Score = 26.7 bits (58), Expect = 3.6
Identities = 8/26 (30%), Positives = 15/26 (57%)
Query: 252 RQHACQECGKTFATSSGLKQHTHIHS 277
R ++C CGK F+ ++ H +H+
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYRVHT 27
Score = 25.9 bits (56), Expect = 6.1
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 58 QPYKCKYCERSFSISSNLQRHVR 80
+PY C C + FS+ ++ H R
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYR 24
Score = 25.9 bits (56), Expect = 6.1
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 789 QPYKCKYCERSFSISSNLQRHVR 811
+PY C C + FS+ ++ H R
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYR 24
>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin
regulator, histone inhibitor binding, methylation,
nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A
{Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A*
2xas_A* 2com_A
Length = 852
Score = 33.0 bits (74), Expect = 0.55
Identities = 30/253 (11%), Positives = 54/253 (21%), Gaps = 38/253 (15%)
Query: 461 SGGKLFEFSESKDSPPTAEEANSNQRPSPARPTISASNAVTYPDPREQLEVVTTDVKSDV 520
SG K + + + T EA + A+ P V +
Sbjct: 3 SGKKAAAAAAAAAAAATGTEAGPGTAGGSENGSEVAAQ----PAGLSGPAEVGPGAVGER 58
Query: 521 NQKPRDKLTNFSIDKLSGKMDSPKDEDASEESKPKKAKYCDQPLDLSIASKSSIDSDKQD 580
+ ++ G + P + ++
Sbjct: 59 TPRKKEPPRAS----PPGGLAEPPGSAGPQAGPTVVP------------GSATPMETGIA 102
Query: 581 ANETFVKTPATSPEIGKDESVINKSSPTPPDDPVEESKRSPTPQIVSRSPSPIKNRSPSP 640
+T + + + D+ E +R+ + + P P P
Sbjct: 103 ETPEGRRTSRRKRAKVEYREMDESLANLSEDEYYSEEERNAKAEKEKKLPPPPPQAPPEE 162
Query: 641 PVSKANTTPMAYPKPIHPMSLEAFFPLKNFGSRSYPPFPPPHPTDPHERLCPPSLPGFNP 700
P F SR P E C P +
Sbjct: 163 ENESEPEEPSGVE-------------GAAFQSR-----LPHDRMTSQEAACFPDIISGPQ 204
Query: 701 QRSFPFLGLMNGI 713
Q FL + N
Sbjct: 205 QTQKVFLFIRNRT 217
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate;
VHS, FYVE, zinc finger, superhelix, transferase; HET:
CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2
g.50.1.1
Length = 220
Score = 32.0 bits (72), Expect = 0.63
Identities = 17/112 (15%), Positives = 29/112 (25%), Gaps = 15/112 (13%)
Query: 184 EDHLITGHRYPPDQYRCESCSQTFCWRPHLNFHQAQVHGRKFPCENCTKVFSDPSNLQRH 243
+ + + + + + A C C F+
Sbjct: 121 DKYQAIKDTMTILKAKGHTFPELREADAMFTADTAPNWADGRVCHRCRVEFT-------- 172
Query: 244 IRTHHVGARQHACQECGKTFATSSGLKQHTHIHS-SVKPFR-CEVCHKAYTQ 293
R+H C+ CG+ F KQ K R C+ C A +
Sbjct: 173 -----FTNRKHHCRNCGQVFCGQCTAKQCPLPKYGIEKEVRVCDGCFAALQR 219
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 701
Score = 32.6 bits (74), Expect = 0.65
Identities = 20/84 (23%), Positives = 29/84 (34%), Gaps = 31/84 (36%)
Query: 51 LRTHTGEQPYKCKYCERSFSISSNLQRHVRNIH-NKEKPFK--CPLCDRCFGQQTNLDR- 106
LR+H +S V ++ K PFK DRCF ++ D+
Sbjct: 202 LRSHM----------------TSGWFLTVSDLMNKKPLPFKLFSI--DRCFRREQKEDKS 243
Query: 107 HLKK-HEADDGSGLV-----SMAD 124
HL H A S + + D
Sbjct: 244 HLMTYHSA---SCAIAGEGVDIND 264
Score = 32.6 bits (74), Expect = 0.65
Identities = 20/84 (23%), Positives = 29/84 (34%), Gaps = 31/84 (36%)
Query: 782 LRTHTGEQPYKCKYCERSFSISSNLQRHVRNIH-NKEKPFK--CPLCDRCFGQQTNLDR- 837
LR+H +S V ++ K PFK DRCF ++ D+
Sbjct: 202 LRSHM----------------TSGWFLTVSDLMNKKPLPFKLFSI--DRCFRREQKEDKS 243
Query: 838 HLKK-HEADDGSGLV-----SMAD 855
HL H A S + + D
Sbjct: 244 HLMTYHSA---SCAIAGEGVDIND 264
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle;
NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Length = 192
Score = 31.9 bits (72), Expect = 0.69
Identities = 18/137 (13%), Positives = 33/137 (24%), Gaps = 17/137 (12%)
Query: 200 CESCSQTFCWRPHLNFHQAQVHGRKFPCENCTKVFSDPSNLQRHIRTHHVGARQHA---- 255
C+SC E+ + + + + A++
Sbjct: 58 CKSCYGKKYGPKGKGKGMGAGTLSTDKGESLGIKYEEGQSHRPTNPNASRMAQKVGGSDG 117
Query: 256 CQECGKTFATS---SGLKQHTHIHSSVKPFRCEVCHKAYTQFSNLCRHK-----RMHANC 307
C CG+ + G + H FRC C K+ + L +
Sbjct: 118 CPRCGQAVYAAEKVIGAGKSWHKSC----FRCAKCGKSLES-TTLADKDGEIYCKGCYAK 172
Query: 308 RMQIKCVKCDQSFSTVT 324
K Q +
Sbjct: 173 NFGPKGFGFGQGAGALI 189
Score = 28.8 bits (64), Expect = 6.0
Identities = 19/137 (13%), Positives = 34/137 (24%), Gaps = 14/137 (10%)
Query: 199 RCESCSQTFCWRPHLNFHQAQVHGRKFPCENCTKVFSDPSNLQRHIRTHHVGARQHACQE 258
+C C + + + + H F C C K T V + C+
Sbjct: 9 KCGVCQKAVYFAEEVQCEGSSFHKSCFLCMVCKKNLDS--------TTVAVHGDEIYCKS 60
Query: 259 CGKTFATSSGLKQHTHIHSSVKPFRCEVCHKAYTQFSNLCRHKRMHANCRMQI---KCVK 315
C G + + + K S+ + + C +
Sbjct: 61 CYGKKYGPKGKGKGMGAGTLSTDKGESLGIKYEEGQSHRPTNPNASRMAQKVGGSDGCPR 120
Query: 316 CDQSFST---VTSLSKH 329
C Q+ V K
Sbjct: 121 CGQAVYAAEKVIGAGKS 137
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein,
abnormal nuclear; zinc-finger, beta barrel, VWA domain,
gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP:
a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Length = 926
Score = 32.9 bits (74), Expect = 0.73
Identities = 11/65 (16%), Positives = 15/65 (23%)
Query: 335 STTPGTTPSGQNSLSAMSHQTPGIPNPYLMYPRPGGTLPFYPPSLMPPYPGLFQPNQTPT 394
TP Q A + + + P P + P QP P
Sbjct: 61 FLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPA 120
Query: 395 PHHPF 399
P
Sbjct: 121 YGQPS 125
Score = 29.0 bits (64), Expect = 9.4
Identities = 10/61 (16%), Positives = 13/61 (21%), Gaps = 2/61 (3%)
Query: 338 PGTTPSGQNSLSAMSHQTPGIPNPYLMYPRPGGTLPFYPPSLMPPYPGLFQPNQTPTPHH 397
GQN+ P G + P +P Q TP
Sbjct: 11 QAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQ--QQFLTPAQEQ 68
Query: 398 P 398
Sbjct: 69 L 69
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 31.7 bits (71), Expect = 0.75
Identities = 10/54 (18%), Positives = 22/54 (40%), Gaps = 8/54 (14%)
Query: 408 QSMKSNEEL-DRAKININLSVEAYYRF---QLQKNVQQSEEKRKNSPSPRKSDV 457
S +E ++AK ++ E + + Q++KN + K +D+
Sbjct: 104 ASKVMEQEWREKAKKDL----EEWNQRQSEQVEKNKINNRIADKAFYQQPDADI 153
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Length = 32
Score = 28.5 bits (63), Expect = 0.76
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 32 YACKYCGKVFPRSANLTRHLRT 53
+AC C K F RS L++H++T
Sbjct: 3 FACPACPKRFMRSDALSKHIKT 24
Score = 28.5 bits (63), Expect = 0.76
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 763 YACKYCGKVFPRSANLTRHLRT 784
+AC C K F RS L++H++T
Sbjct: 3 FACPACPKRFMRSDALSKHIKT 24
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate;
signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Length = 226
Score = 32.0 bits (72), Expect = 0.78
Identities = 16/86 (18%), Positives = 25/86 (29%), Gaps = 2/86 (2%)
Query: 210 RPHLNFHQAQVHGRKFPCENCTKVFSDPSNLQRHIRTHHVGARQHACQECGKTFATSSGL 269
+ + + D R V R+H C+ CG+ F
Sbjct: 137 KVEGHVFPEFKESDAMFAAERAPDWVDAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSS 196
Query: 270 KQHTHIH-SSVKPFR-CEVCHKAYTQ 293
K T K R CE C++ +
Sbjct: 197 KYSTIPKFGIEKEVRVCEPCYEQLNR 222
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 31.6 bits (71), Expect = 0.80
Identities = 11/64 (17%), Positives = 14/64 (21%), Gaps = 21/64 (32%)
Query: 21 NGSSSKTTKDRYACKYCGKVFPRSANLTRHLRTHTGEQPYKCKYC-------------E- 66
G C C + R G+ C C E
Sbjct: 11 AGRRGPNLNIVLTCPECKV---YPPKIVE--RFSEGD--VVCALCGLVLSDKLVDTRSEW 63
Query: 67 RSFS 70
R+FS
Sbjct: 64 RTFS 67
Score = 31.6 bits (71), Expect = 0.80
Identities = 11/64 (17%), Positives = 14/64 (21%), Gaps = 21/64 (32%)
Query: 752 NGSSSKTTKDRYACKYCGKVFPRSANLTRHLRTHTGEQPYKCKYC-------------E- 797
G C C + R G+ C C E
Sbjct: 11 AGRRGPNLNIVLTCPECKV---YPPKIVE--RFSEGD--VVCALCGLVLSDKLVDTRSEW 63
Query: 798 RSFS 801
R+FS
Sbjct: 64 RTFS 67
Score = 30.0 bits (67), Expect = 2.7
Identities = 10/52 (19%), Positives = 13/52 (25%), Gaps = 16/52 (30%)
Query: 209 WRPHLNFHQAQVHGRKFPCENCTKVFSDPSNLQRHIRTHHVGARQHACQECG 260
P+LN C C P + + G C CG
Sbjct: 14 RGPNLNIVLT--------CPECK---VYPPKI---VERFSEG--DVVCALCG 49
>3sp4_A Aprataxin-like protein; HIT domain, zinc finger, DNA-binding
protein, DNA deadenylas hydrolase; 1.80A
{Schizosaccharomyces pombe} PDB: 3spd_A* 3spl_A* 3szq_A*
Length = 204
Score = 31.6 bits (71), Expect = 0.82
Identities = 12/40 (30%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Query: 73 SNLQRHVRNIHNKEKPFKCPLCDRCFGQQ-TNLDRHLKKH 111
SNL ++ KC C FG+ T L HL++
Sbjct: 154 SNLPTRGTLTSLFQEDLKCWRCGETFGRHFTKLKAHLQEE 193
Score = 31.6 bits (71), Expect = 0.82
Identities = 12/40 (30%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Query: 804 SNLQRHVRNIHNKEKPFKCPLCDRCFGQQ-TNLDRHLKKH 842
SNL ++ KC C FG+ T L HL++
Sbjct: 154 SNLPTRGTLTSLFQEDLKCWRCGETFGRHFTKLKAHLQEE 193
>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus
interaction, metal-binding, nucleus, receptor,
transcription, transcription regulation, zinc-FIN
activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB:
3dzu_A* 3e00_A*
Length = 467
Score = 32.4 bits (73), Expect = 0.83
Identities = 20/120 (16%), Positives = 29/120 (24%), Gaps = 4/120 (3%)
Query: 604 KSSPTPPDDPVEESKRSPTPQIVSRSPSPIKNRSPSPPVSKANTTPMAYPKPIHPMSLEA 663
V S SPT + +PS + P + P +
Sbjct: 10 DDDDKMFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSP----GQLHSPISTLSSPING 65
Query: 664 FFPLKNFGSRSYPPFPPPHPTDPHERLCPPSLPGFNPQRSFPFLGLMNGINNSLGVNRTP 723
P + S P PT P S +P + GV + P
Sbjct: 66 MGPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNGVLKVP 125
>3i9v_3 NADH-quinone oxidoreductase subunit 3; electron transport,
respiratory chain, cell flavoprotein, FMN, iron,
iron-sulfur, membrane; HET: FMN; 3.10A {Thermus
thermophilus} PDB: 2ybb_3* 2fug_3* 3iam_3* 3ias_3*
3m9s_3*
Length = 783
Score = 31.8 bits (72), Expect = 1.2
Identities = 6/27 (22%), Positives = 8/27 (29%), Gaps = 2/27 (7%)
Query: 285 EVCHKAYTQFSNLCRHKRMH--ANCRM 309
+ A C K + CRM
Sbjct: 21 DAVFHAGYDVPLFCSEKHLSPIGACRM 47
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 685
Score = 31.9 bits (72), Expect = 1.3
Identities = 24/103 (23%), Positives = 38/103 (36%), Gaps = 25/103 (24%)
Query: 11 EILTSQNNAVNGSSSKTTKD-RYACKYCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSF 69
+++ +NA+ SS K + S+ LT LR+H
Sbjct: 163 DLVLEISNALEISSEMGLKILEDVFPEFKDLTAVSSKLT--LRSHM-------------- 206
Query: 70 SISSNLQRHVRNIH-NKEKPFK--CPLCDRCFGQQTNLDR-HL 108
+S V ++ K PFK DRCF ++ D+ HL
Sbjct: 207 --TSGWFLTVSDLMNKKPLPFKLFSI--DRCFRREQKEDKSHL 245
Score = 31.9 bits (72), Expect = 1.3
Identities = 24/103 (23%), Positives = 38/103 (36%), Gaps = 25/103 (24%)
Query: 742 EILTSQNNAVNGSSSKTTKD-RYACKYCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSF 800
+++ +NA+ SS K + S+ LT LR+H
Sbjct: 163 DLVLEISNALEISSEMGLKILEDVFPEFKDLTAVSSKLT--LRSHM-------------- 206
Query: 801 SISSNLQRHVRNIH-NKEKPFK--CPLCDRCFGQQTNLDR-HL 839
+S V ++ K PFK DRCF ++ D+ HL
Sbjct: 207 --TSGWFLTVSDLMNKKPLPFKLFSI--DRCFRREQKEDKSHL 245
>1ofw_A 9HCC, nine-heme cytochrome C; electron transport, multiheme
cytochrome C, electron transfer, electron transpor; HET:
HEC GOL; 1.5A {Desulfovibrio desulfuricans} SCOP:
a.138.1.1 PDB: 1ofy_A* 19hc_A* 1duw_A*
Length = 296
Score = 31.5 bits (69), Expect = 1.5
Identities = 16/126 (12%), Positives = 33/126 (26%), Gaps = 16/126 (12%)
Query: 194 PPDQYRCESCSQTFCWRPHLNFHQAQVHGRKFPCENCTKVFSDPSNLQRHIRTHHVGARQ 253
+ ++ ++ + F + + + H +
Sbjct: 164 LAQKTVEPVSPMLAPYKVVIDALADKYEPSNFTHRRHLTSLMERIKDDKLAQAFH-NKPE 222
Query: 254 HACQECGKTFATSSGLKQHTHIHSSVKPFRCEVCHKAYTQFSNLCRHKRMHANCRMQIKC 313
C C H S+ P +C CH +N R M A ++C
Sbjct: 223 ILCATC------------HHRSPLSLTPPKCGSCHTKEIDKANPGRPNLMAA---YHLQC 267
Query: 314 VKCDQS 319
+ C +
Sbjct: 268 MGCHKG 273
>3tx7_B Nuclear receptor subfamily 5 group A member 2; LRH-1, beta-catenin,
armadillo repeat, nuclear receptor LIGA binding domain,
protein binding; HET: P6L; 2.76A {Homo sapiens}
Length = 352
Score = 31.1 bits (70), Expect = 1.5
Identities = 16/112 (14%), Positives = 36/112 (32%), Gaps = 12/112 (10%)
Query: 597 KDESVINKSSPTPPDDPVEESKRSPTPQIVSRSPSPIKNRSPSPPVSKANTTPMAYPKPI 656
K E++ P D + + ++ + + + P + + +P
Sbjct: 3 KLEAMSQVIQAMPSDLTISSAIQNIHS-----ASKGLPLNHAALPPTDYDRSPFVTS--- 54
Query: 657 HPMSLEAFFPLKNFGSRSYPPFP---PPHPTDPHERLCPPSLPGFNPQRSFP 705
P+S+ G ++Y FP P S+ G++ S+
Sbjct: 55 -PISMTMPPHGSLQGYQTYGHFPSRAIKSEYPDPYTSSPESIMGYSYMDSYQ 105
>1jpy_A Interleukin 17F, IL-17F; cystine-knot, cytokine, T-cell derived,
dimer, immune system; HET: NDG NAG; 2.85A {Homo sapiens}
SCOP: g.17.1.6 PDB: 3jvf_A*
Length = 137
Score = 30.1 bits (67), Expect = 1.6
Identities = 13/65 (20%), Positives = 21/65 (32%)
Query: 592 SPEIGKDESVINKSSPTPPDDPVEESKRSPTPQIVSRSPSPIKNRSPSPPVSKANTTPMA 651
P++G +S P P ++ I++RS SP P
Sbjct: 7 IPKVGHTFFQKPESCPPVPGGSMKLDIGIINENQRVSMSRNIESRSTSPWNYTVTWDPNR 66
Query: 652 YPKPI 656
YP +
Sbjct: 67 YPSEV 71
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc
finger, transcription; NMR {Homo sapiens}
Length = 26
Score = 27.4 bits (60), Expect = 1.6
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 32 YACKYCGKVFPRSANLTRHLRTH 54
Y C+ CGK F +S+ L H+R H
Sbjct: 3 YVCERCGKRFVQSSQLANHIRHH 25
Score = 27.4 bits (60), Expect = 1.6
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 763 YACKYCGKVFPRSANLTRHLRTH 785
Y C+ CGK F +S+ L H+R H
Sbjct: 3 YVCERCGKRFVQSSQLANHIRHH 25
Score = 26.6 bits (58), Expect = 3.3
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 280 KPFRCEVCHKAYTQFSNLCRHKRMH 304
KP+ CE C K + Q S L H R H
Sbjct: 1 KPYVCERCGKRFVQSSQLANHIRHH 25
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 27.5 bits (60), Expect = 1.8
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 87 KPFKCPLCDRCFGQQTNLDRHLKKHEAD 114
KPFKC LC+ ++NL H+ +H +
Sbjct: 8 KPFKCSLCEYATRSKSNLKAHMNRHSTE 35
Score = 27.5 bits (60), Expect = 1.8
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 818 KPFKCPLCDRCFGQQTNLDRHLKKHEAD 845
KPFKC LC+ ++NL H+ +H +
Sbjct: 8 KPFKCSLCEYATRSKSNLKAHMNRHSTE 35
>3fo3_A Eight-heme nitrite reductase; alpha protein, eight hemes C,
oxidoreductase; HET: HEC PG6 PG4; 1.40A
{Thioalkalivibrio nitratireducens} PDB: 3d1i_A* 3f29_A*
2zo5_A* 3gm6_A* 3lg1_A* 3lgq_A* 3mmo_A* 2ot4_A* 3uu9_A*
3rkh_A* 3sce_A* 3s7w_A* 3owm_A* 3ttb_A*
Length = 525
Score = 31.3 bits (69), Expect = 1.9
Identities = 24/212 (11%), Positives = 44/212 (20%), Gaps = 16/212 (7%)
Query: 190 GHRYPPDQYRCESCSQTFCWRPHLNFHQAQVHGRKFPCENCTKVFSDPSNLQRHIRTHHV 249
H + + + ++ G S+ QR +
Sbjct: 118 SHAFMLVDHFVVDRAYGGRFQFKNWQKVTDGMGAVRGAWTVLTDADPESSDQRRFLSQTA 177
Query: 250 GARQHACQEC------------GKTFAT---SSGLKQHTHIHSSVKPFRCEVCHKAYTQF 294
A C C G S + P C +CH ++
Sbjct: 178 TAANPVCLNCKTQDHILDWAYMGDEHEAAKWSRTSEVVEFARDLNHPLNCFMCHDPHSAG 237
Query: 295 SNLCRHKRMHANCRMQIKCVKCDQSFSTVTSLSKHKR-FCDSTTPGTTPSGQNSLSAMSH 353
+ R ++A + D S ++K + M
Sbjct: 238 PRVVRDGLINAVVDRGLGTYPHDPVKSEQQGMTKVTFQRGREDFRAIGLLDTADSNVMCA 297
Query: 354 QTPGIPNPYLMYPRPGGTLPFYPPSLMPPYPG 385
Q N Y G+ +
Sbjct: 298 QCHVEYNCNPGYQLSDGSRVGMDDRRANHFFW 329
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 665
Score = 31.1 bits (70), Expect = 2.0
Identities = 16/62 (25%), Positives = 23/62 (37%), Gaps = 22/62 (35%)
Query: 51 LRTHTGEQPYKCKYCERSFSISSNLQRHVRNIH-NKEKPFK--CPLCDRCFGQQTNLDR- 106
LR+H +S V ++ K PFK DRCF ++ D+
Sbjct: 202 LRSHM----------------TSGWFLTVSDLMNKKPLPFKLFSI--DRCFRREQKEDKS 243
Query: 107 HL 108
HL
Sbjct: 244 HL 245
Score = 31.1 bits (70), Expect = 2.0
Identities = 16/62 (25%), Positives = 23/62 (37%), Gaps = 22/62 (35%)
Query: 782 LRTHTGEQPYKCKYCERSFSISSNLQRHVRNIH-NKEKPFK--CPLCDRCFGQQTNLDR- 837
LR+H +S V ++ K PFK DRCF ++ D+
Sbjct: 202 LRSHM----------------TSGWFLTVSDLMNKKPLPFKLFSI--DRCFRREQKEDKS 243
Query: 838 HL 839
HL
Sbjct: 244 HL 245
>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane
fusion, viral P glycoprotein B, HSV-1, membrane; HET:
NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A*
3nwd_A*
Length = 703
Score = 31.1 bits (70), Expect = 2.1
Identities = 14/109 (12%), Positives = 22/109 (20%), Gaps = 15/109 (13%)
Query: 605 SSPTPPDDPVEESKRSPTPQIVSRSPSPI----KNRSPSPPVSKANTTPMAYPKPIHPMS 660
+SP P + P + + K T P +
Sbjct: 6 TSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDNATVAA 65
Query: 661 LEAFFPLKNFGSRSYPPFPPPHPTDPHERLCPPSLPG----FNPQRSFP 705
A ++ +CPP F R P
Sbjct: 66 GHATLREHLRDIKAENTDANF-------YVCPPPTGATVVQFEQPRRCP 107
Score = 29.5 bits (66), Expect = 7.3
Identities = 21/116 (18%), Positives = 32/116 (27%), Gaps = 14/116 (12%)
Query: 591 TSPEIGKDESVINKSSPTPPDDPVEESKRSPTPQIVSRSPSPIKNRSPSPPVSKANTTPM 650
TSP + ++ P +PT + K ++P+PP + +
Sbjct: 6 TSPGTPGVAAATQAANGGPATPAPPALGAAPTG--DPKPKKNKKPKNPTPPRPAGDNATV 63
Query: 651 AYPKPIHPMSLEAFFPLKNFGSRSYPPF---PPPHPTD----PHERLCPPSLPGFN 699
A L + F PPP R CP G N
Sbjct: 64 AAGHATLREHLRDI-----KAENTDANFYVCPPPTGATVVQFEQPRRCPTRPEGQN 114
>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 66
Score = 28.3 bits (62), Expect = 2.3
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 225 FPCENCTKVFSDPSNLQRHIRTHHVGARQ 253
PC C KVF+D + L++H H V + Q
Sbjct: 14 LPCGLCGKVFTDANRLRQHEAQHGVTSLQ 42
>1pg5_B Aspartate carbamoyltransferase regulatory chain; 2.60A {Sulfolobus
acidocaldarius} SCOP: d.58.2.1 g.41.7.1 PDB: 2be9_B*
Length = 168
Score = 30.1 bits (68), Expect = 2.3
Identities = 4/25 (16%), Positives = 7/25 (28%)
Query: 47 LTRHLRTHTGEQPYKCKYCERSFSI 71
+ +C+YCE
Sbjct: 131 IPTFKTLTEKPLKMRCEYCETIIDE 155
Score = 30.1 bits (68), Expect = 2.3
Identities = 4/25 (16%), Positives = 7/25 (28%)
Query: 778 LTRHLRTHTGEQPYKCKYCERSFSI 802
+ +C+YCE
Sbjct: 131 IPTFKTLTEKPLKMRCEYCETIIDE 155
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 27.1 bits (59), Expect = 2.3
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 24 SSKTTKDRYACKYCGKVFPRSANLTRHLRTHTGE 57
SS ++ + C CGK F L H HT +
Sbjct: 2 SSGSSGKTHLCDMCGKKFKSKGTLKSHKLLHTAD 35
Score = 27.1 bits (59), Expect = 2.3
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 755 SSKTTKDRYACKYCGKVFPRSANLTRHLRTHTGE 788
SS ++ + C CGK F L H HT +
Sbjct: 2 SSGSSGKTHLCDMCGKKFKSKGTLKSHKLLHTAD 35
Score = 27.1 bits (59), Expect = 3.0
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 252 RQHACQECGKTFATSSGLKQHTHIHSS 278
+ H C CGK F + LK H +H++
Sbjct: 8 KTHLCDMCGKKFKSKGTLKSHKLLHTA 34
>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: g.37.1.1
Length = 88
Score = 28.7 bits (63), Expect = 2.6
Identities = 15/49 (30%), Positives = 21/49 (42%)
Query: 19 AVNGSSSKTTKDRYACKYCGKVFPRSANLTRHLRTHTGEQPYKCKYCER 67
+ G+ + Y CK+C +A LT HL H E + K ER
Sbjct: 13 IILGNGPRLQNSTYQCKHCDSKLQSTAELTSHLNIHNEEFQKRAKRQER 61
Score = 28.7 bits (63), Expect = 2.6
Identities = 15/49 (30%), Positives = 21/49 (42%)
Query: 750 AVNGSSSKTTKDRYACKYCGKVFPRSANLTRHLRTHTGEQPYKCKYCER 798
+ G+ + Y CK+C +A LT HL H E + K ER
Sbjct: 13 IILGNGPRLQNSTYQCKHCDSKLQSTAELTSHLNIHNEEFQKRAKRQER 61
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici
SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens}
PDB: 3cw1_A
Length = 231
Score = 30.4 bits (68), Expect = 2.7
Identities = 19/58 (32%), Positives = 22/58 (37%), Gaps = 4/58 (6%)
Query: 338 PGTTPSGQNSLSAMSHQTPGIPNPYLMYPRPGGTLPFYPPSLMPPYPGLFQPNQTPTP 395
P P G+ G P P +M P PG P PP +PP G P P P
Sbjct: 165 PTQYPPGRGGPPPP--MGRGAPPPGMMGPPPGMRPPMGPPMGIPPGRG--TPMGMPPP 218
Score = 29.6 bits (66), Expect = 4.4
Identities = 11/61 (18%), Positives = 15/61 (24%)
Query: 338 PGTTPSGQNSLSAMSHQTPGIPNPYLMYPRPGGTLPFYPPSLMPPYPGLFQPNQTPTPHH 397
+ +G + P P P P M P G+ TP
Sbjct: 157 ATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPPMGPPMGIPPGRGTPMGMP 216
Query: 398 P 398
P
Sbjct: 217 P 217
Score = 28.8 bits (64), Expect = 6.9
Identities = 11/61 (18%), Positives = 15/61 (24%)
Query: 338 PGTTPSGQNSLSAMSHQTPGIPNPYLMYPRPGGTLPFYPPSLMPPYPGLFQPNQTPTPHH 397
T + + + S P P PP M P +P P
Sbjct: 146 GRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPPMGPPMGI 205
Query: 398 P 398
P
Sbjct: 206 P 206
Score = 28.8 bits (64), Expect = 7.9
Identities = 16/70 (22%), Positives = 22/70 (31%), Gaps = 3/70 (4%)
Query: 337 TPGTTPSGQNSLSAMSHQTPGIPNPYLMYPRPGGTLP---FYPPSLMPPYPGLFQPNQTP 393
TP + + +A + G P Y PP +M P PG+ P P
Sbjct: 143 TPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPPMGPP 202
Query: 394 TPHHPFLSNP 403
P P
Sbjct: 203 MGIPPGRGTP 212
>2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} PDB: 2elw_A
Length = 37
Score = 27.0 bits (59), Expect = 3.1
Identities = 8/23 (34%), Positives = 17/23 (73%)
Query: 62 CKYCERSFSISSNLQRHVRNIHN 84
C++C++ +S NL +H+R+ H+
Sbjct: 12 CRFCKKKYSDVKNLIKHIRDAHD 34
Score = 27.0 bits (59), Expect = 3.1
Identities = 8/23 (34%), Positives = 17/23 (73%)
Query: 793 CKYCERSFSISSNLQRHVRNIHN 815
C++C++ +S NL +H+R+ H+
Sbjct: 12 CRFCKKKYSDVKNLIKHIRDAHD 34
Score = 25.9 bits (56), Expect = 7.7
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 222 GRKFPCENCTKVFSDPSNLQRHIRTHH 248
G K C C K +SD NL +HIR H
Sbjct: 7 GIKQHCRFCKKKYSDVKNLIKHIRDAH 33
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA,
metal-binding, transcription; NMR {Mus musculus}
Length = 27
Score = 26.7 bits (58), Expect = 3.2
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 280 KPFRCEVCHKAYTQFSNLCRHKRMHA 305
KPF C +C + FS + +H R H
Sbjct: 2 KPFSCSLCPQRSRDFSAMTKHLRTHG 27
>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 648
Score = 30.3 bits (68), Expect = 3.2
Identities = 16/62 (25%), Positives = 23/62 (37%), Gaps = 22/62 (35%)
Query: 51 LRTHTGEQPYKCKYCERSFSISSNLQRHVRNIH-NKEKPFK--CPLCDRCFGQQTNLDR- 106
LR+H +S V ++ K PFK DRCF ++ D+
Sbjct: 202 LRSHM----------------TSGWFLTVSDLMNKKPLPFKLFSI--DRCFRREQKEDKS 243
Query: 107 HL 108
HL
Sbjct: 244 HL 245
Score = 30.3 bits (68), Expect = 3.2
Identities = 16/62 (25%), Positives = 23/62 (37%), Gaps = 22/62 (35%)
Query: 782 LRTHTGEQPYKCKYCERSFSISSNLQRHVRNIH-NKEKPFK--CPLCDRCFGQQTNLDR- 837
LR+H +S V ++ K PFK DRCF ++ D+
Sbjct: 202 LRSHM----------------TSGWFLTVSDLMNKKPLPFKLFSI--DRCFRREQKEDKS 243
Query: 838 HL 839
HL
Sbjct: 244 HL 245
>2or0_A Hydroxylase; APC7385, rhodococcus SP. RHA1, structu genomics,
PSI-2, protein structure initiative, midwest CENT
structural genomics, MCSG; HET: MSE; 2.10A {Rhodococcus
SP}
Length = 414
Score = 30.5 bits (69), Expect = 3.2
Identities = 4/17 (23%), Positives = 8/17 (47%)
Query: 67 RSFSISSNLQRHVRNIH 83
+ + +QR R+ H
Sbjct: 362 GALHYKTPMQRFWRDAH 378
Score = 30.5 bits (69), Expect = 3.2
Identities = 4/17 (23%), Positives = 8/17 (47%)
Query: 798 RSFSISSNLQRHVRNIH 814
+ + +QR R+ H
Sbjct: 362 GALHYKTPMQRFWRDAH 378
>2rfq_A 3-HSA hydroxylase, oxygenase; rhodococcus SP. RHA1, structural
genomics protein structure initiative, midwest center
for structural genomics, MCSG; HET: 1PS; 1.65A
{Rhodococcus SP} PDB: 3aff_A 3afe_A
Length = 394
Score = 30.4 bits (69), Expect = 3.4
Identities = 5/17 (29%), Positives = 9/17 (52%)
Query: 67 RSFSISSNLQRHVRNIH 83
+ + + LQR R+ H
Sbjct: 347 TALANGTPLQRFWRDAH 363
Score = 30.4 bits (69), Expect = 3.4
Identities = 5/17 (29%), Positives = 9/17 (52%)
Query: 798 RSFSISSNLQRHVRNIH 814
+ + + LQR R+ H
Sbjct: 347 TALANGTPLQRFWRDAH 363
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide
binding, hydrogenase maturation factor transferase; HET:
ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A*
3ttf_A* 3ttd_A 3tsq_A
Length = 657
Score = 30.5 bits (69), Expect = 3.7
Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 8/39 (20%)
Query: 223 RKFP-CENCTKVFSDPSNLQRHIRTHHVGARQHACQECG 260
FP C C K + DP + R H A+ AC ECG
Sbjct: 65 AAFPLCPACDKEYRDPLD-----RRFH--AQPVACPECG 96
>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation
domain, Zn finger, DNA-binding regulatory protein; NMR
{Homo sapiens} SCOP: g.37.1.1
Length = 38
Score = 26.6 bits (58), Expect = 3.8
Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 84 NKEKPFKCPL--CDRCFGQQTNLDRHLKKHE 112
+ +KPF C C + F + +L H KHE
Sbjct: 2 SDDKPFLCTAPGCGQRFTNEDHLAVHKHKHE 32
Score = 26.6 bits (58), Expect = 3.8
Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 815 NKEKPFKCPL--CDRCFGQQTNLDRHLKKHE 843
+ +KPF C C + F + +L H KHE
Sbjct: 2 SDDKPFLCTAPGCGQRFTNEDHLAVHKHKHE 32
>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI,
protein structure initiative, center for eukaryotic
structural genomics, CESG; NMR {Homo sapiens} SCOP:
g.37.1.4
Length = 124
Score = 28.9 bits (64), Expect = 3.9
Identities = 9/23 (39%), Positives = 11/23 (47%)
Query: 250 GARQHACQECGKTFATSSGLKQH 272
G H C C + F S+ LK H
Sbjct: 47 GGGLHRCLACARYFIDSTNLKTH 69
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon
SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A
Length = 383
Score = 30.1 bits (67), Expect = 4.1
Identities = 17/119 (14%), Positives = 27/119 (22%), Gaps = 21/119 (17%)
Query: 142 IRSFMGKVTYSGDVAYNQENLYTGNNPPSPLIDVKDDDDNELEDHLITGHRYPPDQYRCE 201
R F + Y Q Y G K D +P ++
Sbjct: 275 FRCFKVATLEATREDYGQSATYLGGIGEE----FKLDR----------FFTFPREK-PVR 319
Query: 202 SCSQTFC------WRPHLNFHQAQVHGRKFPCENCTKVFSDPSNLQRHIRTHHVGARQH 254
T + Q H F + + P ++Q A +H
Sbjct: 320 VDRNTAEIIRHSRLHQWFSVSAEQQHMGLFKANDSYALLHAPLSMQVEQLVSGAAALEH 378
>4dgw_A PRE-mRNA-splicing factor PRP9; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 402
Score = 29.8 bits (66), Expect = 4.1
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 80 RNIHNKEKPFKCPLCDRCFGQQTNLDRHL--KKH 111
++ ++ K CP C R F + + HL K H
Sbjct: 284 GSLRSEAKGIYCPFCSRWFKTSSVFESHLVGKIH 317
Score = 29.8 bits (66), Expect = 4.1
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 811 RNIHNKEKPFKCPLCDRCFGQQTNLDRHL--KKH 842
++ ++ K CP C R F + + HL K H
Sbjct: 284 GSLRSEAKGIYCPFCSRWFKTSSVFESHLVGKIH 317
>2e84_A High-molecular-weight cytochrome C; cytochrome C3 motifs, electron
transport; HET: HEM; 2.70A {Desulfovibrio vulgaris str}
Length = 556
Score = 30.2 bits (65), Expect = 4.2
Identities = 15/127 (11%), Positives = 31/127 (24%), Gaps = 4/127 (3%)
Query: 191 HRYPPDQYRCESCSQTFCWRPHLNFHQAQVHGRKFPCENCTKVFSDPS-NLQRHIRTHHV 249
+ +Q + + R A + + ++ + T
Sbjct: 410 LKATKEQRADVAAATLAARRTTKGTLPADDIPEFVTIGVLSDKYEPSKLPHRKIVNTLMA 469
Query: 250 GARQHACQECGKTFATSSGLKQHTHIHSSVKPFRCEVCHKAYTQFSNLCRHKRMHANCRM 309
T + H + +S P +C CH + R A
Sbjct: 470 AIGDDKLAGTFHTDKATVCAGCHHNSPASKTPPKCASCHGQPFDAAKGDRPGLKAAY--- 526
Query: 310 QIKCVKC 316
+C+ C
Sbjct: 527 HQQCMGC 533
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion,
acrosom; 2.62A {Homo sapiens}
Length = 126
Score = 28.5 bits (64), Expect = 4.5
Identities = 17/101 (16%), Positives = 31/101 (30%), Gaps = 14/101 (13%)
Query: 199 RCESCSQTFCWRPHLNFHQAQVHGRKFPCENCTKVFSDPSNLQRHI--------RTHHVG 250
RC C + + H + F C +C + + + ++ + +V
Sbjct: 5 RCAGCDELIFSNEYTQAENQNWHLKHFCCFDCDSILAG----EIYVMVNDKPVCKPCYVK 60
Query: 251 ARQHACQECGKTFATSSGL--KQHTHIHSSVKPFRCEVCHK 289
CQ C + H+S + F C C K
Sbjct: 61 NHAVVCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSK 101
>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 26.8 bits (58), Expect = 4.5
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 21 NGSSSKTTKDRYACKYCGKVFPRSANLTRHLRTHTGE 57
+ SS T+ RY C C F +L +H +TH +
Sbjct: 2 SSGSSGHTRKRYECSKCQATFNLRKHLIQHQKTHAAK 38
Score = 26.8 bits (58), Expect = 4.5
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 752 NGSSSKTTKDRYACKYCGKVFPRSANLTRHLRTHTGE 788
+ SS T+ RY C C F +L +H +TH +
Sbjct: 2 SSGSSGHTRKRYECSKCQATFNLRKHLIQHQKTHAAK 38
>1mv3_A MYC box dependent interacting protein 1; tumor suppressor,
endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP:
b.34.2.1
Length = 213
Score = 29.3 bits (64), Expect = 4.6
Identities = 20/123 (16%), Positives = 32/123 (26%), Gaps = 5/123 (4%)
Query: 588 TPATSPEIGKDESVINKSSPTP----PDDPVEESKRSPTPQIVSRSPS-PIKNRSPSPPV 642
+PA +PEI + TP P P + K P P +PS +K
Sbjct: 3 SPAATPEIRVNHEPEPAGGATPGATLPKSPSQLRKGPPVPPPPKHTPSKEVKQEQILSLF 62
Query: 643 SKANTTPMAYPKPIHPMSLEAFFPLKNFGSRSYPPFPPPHPTDPHERLCPPSLPGFNPQR 702
++ P P + + P L + F
Sbjct: 63 EDTFVPEISVTTPSQPAEASEVAGGTQPAAGAQEPGETAASEAASSSLPAVVVETFPATV 122
Query: 703 SFP 705
+
Sbjct: 123 NGT 125
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of
[NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET:
APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB:
3vti_A
Length = 761
Score = 30.1 bits (68), Expect = 4.6
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 8/39 (20%)
Query: 223 RKFP-CENCTKVFSDPSNLQRHIRTHHVGARQHACQECG 260
+ FP CE C++ + DP + R H A+ AC +CG
Sbjct: 159 KVFPMCEKCSREYHDPHD-----RRFH--AQPVACFDCG 190
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor,
chromophore, glycoprotein, lipoprotein, membrane,
palmitate phosphorylation; HET: BOG RET PLM TWT PC1;
2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Length = 448
Score = 29.9 bits (67), Expect = 4.9
Identities = 13/83 (15%), Positives = 18/83 (21%), Gaps = 1/83 (1%)
Query: 317 DQSFSTVTSLSKHKRFCDSTTPGTTPSGQNSLSAMSHQTPGIPNPYLMYPRPGGTLPFYP 376
D + + + ++ Q P P P G P
Sbjct: 346 DDKDAETEIPAGESSDAAPSADAAQMKEMMAMMQKMQQQQAAYPPQGYAPPPQGYPPQGY 405
Query: 377 PSLMPPYPGLFQPNQTPTPH-HP 398
P P G P P P
Sbjct: 406 PPQGYPPQGYPPQGYPPPPQGAP 428
>2air_B Aspartate carbamoyltransferase regulatory chain; aspartate
transcarbamylase, alanosine, carbamyl phosphate, T
transferase; HET: AL0; 2.00A {Escherichia coli} SCOP:
d.58.2.1 g.41.7.1 PDB: 1ezz_B 1f1b_B* 1i5o_B* 1q95_G*
1r0b_G* 1r0c_B* 1raa_B* 1rab_B* 1rac_B* 1rad_B* 1rae_B*
1raf_B* 1rag_B* 1rah_B* 1rai_B* 1sku_B 1tth_B* 1tu0_B
1tug_B* 1xjw_B* ...
Length = 153
Score = 28.5 bits (64), Expect = 5.9
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 50 HLRTHTGEQPYKCKYCERSFSI 71
+R + KCKYCE+ FS
Sbjct: 126 AVRKRANDIALKCKYCEKEFSH 147
Score = 28.5 bits (64), Expect = 5.9
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 781 HLRTHTGEQPYKCKYCERSFSI 802
+R + KCKYCE+ FS
Sbjct: 126 AVRKRANDIALKCKYCEKEFSH 147
>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease,
UBL conjugation pathway deubiquitinating enzyme, DUB,
zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB:
3n3k_A
Length = 396
Score = 29.5 bits (66), Expect = 5.9
Identities = 15/72 (20%), Positives = 26/72 (36%), Gaps = 5/72 (6%)
Query: 600 SVINKSSPTPPDDPVEESKRSPTPQIVSRSPSPIKNRSPSPPVSKANTTPMAYPKPIHPM 659
S + + P +PT V+R P P +S+ + + + P+
Sbjct: 3 SSHHHHHHSSGLVPRGSPTVTPT---VNRENKP--TCYPKAEISRLSASQIRNLNPVFGG 57
Query: 660 SLEAFFPLKNFG 671
S A L+N G
Sbjct: 58 SGPALTGLRNLG 69
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription,
multi-protein complex, DNA- binding, magnesium; 3.65A
{Schizosaccharomyces pombe}
Length = 1752
Score = 29.7 bits (66), Expect = 6.2
Identities = 18/113 (15%), Positives = 30/113 (26%), Gaps = 4/113 (3%)
Query: 611 DDPVEESKRSPTPQIVSRSPSPIKNRSPSPPVSKANTTPMAYPKPIHPMSLEAFFPLKNF 670
D + + T ++ P + +PM + AF PL
Sbjct: 1452 DQDMLMNYSLGTAVPTLAGSGMGTSQLPEGAGTPYERSPMVDSGFVGSPDAAAFSPLVQG 1511
Query: 671 GSRSYPPFPPPHPTDPHERLCPPSLPGFNPQRSFPFLGLMNGINNSLGVNRTP 723
GS F P +P + PF M+ + +P
Sbjct: 1512 GSEGREGFGDYGLLGAA----SPYKGVQSPGYTSPFSSAMSPGYGLTSPSYSP 1560
>2qgp_A HNH endonuclease; Q39X46, GMR87, X-RAY, NESG, structural
genomics, PSI-2, protein structure initiative; 2.60A
{Geobacter metallireducens gs-15}
Length = 112
Score = 27.8 bits (62), Expect = 6.3
Identities = 9/21 (42%), Positives = 11/21 (52%), Gaps = 1/21 (4%)
Query: 29 KDRYACKYCGKVFPRSANLTR 49
R C YCG++FP LT
Sbjct: 33 IARGICHYCGEIFPPE-ELTM 52
Score = 27.8 bits (62), Expect = 6.3
Identities = 9/21 (42%), Positives = 11/21 (52%), Gaps = 1/21 (4%)
Query: 760 KDRYACKYCGKVFPRSANLTR 780
R C YCG++FP LT
Sbjct: 33 IARGICHYCGEIFPPE-ELTM 52
>1m6b_A C-ER, receptor protein-tyrosine kinase ERBB-3; cell surface
receptor, immunity, signaling transferase; HET: NAG NDG;
2.60A {Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1
g.3.9.1 PDB: 3p11_A*
Length = 621
Score = 29.6 bits (65), Expect = 6.4
Identities = 14/133 (10%), Positives = 30/133 (22%), Gaps = 8/133 (6%)
Query: 194 PPDQYRCESCSQTFCWRPHLNFHQAQVHGRKFPCENCTKVFSDPSNLQRHIRTHHVGARQ 253
+ L +H + + ++ + +R +
Sbjct: 424 FRSLKEISAGRIYISANRQLCYHHSLNWTKVLRGPTEERLDIKHNRPRRDCVAEG----K 479
Query: 254 HACQECGKTFATSSGLKQ----HTHIHSSVKPFRCEVCHKAYTQFSNLCRHKRMHANCRM 309
C G Q + V C + +F++ H C+
Sbjct: 480 VCDPLCSSGGCWGPGPGQCLSCRNYSRGGVCVTHCNFLNGEPREFAHEAECFSCHPECQP 539
Query: 310 QIKCVKCDQSFST 322
C+ S S
Sbjct: 540 MEGTATCNGSGSD 552
>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 37
Score = 26.0 bits (56), Expect = 6.6
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 222 GRKFPCENCTKVFSDPSNLQRHIRTHH 248
GR + C C K FS+ ++ HI+T+H
Sbjct: 7 GRSYSCPVCEKSFSEDRLIKSHIKTNH 33
>3iyl_X VP3; non-enveloped virus, membrane penetration protein, autocleav
myristol group, icosahedral virus; HET: MYR; 3.30A
{Grass carp reovirus} PDB: 3k1q_C 3k1q_B
Length = 1214
Score = 29.8 bits (66), Expect = 6.6
Identities = 14/72 (19%), Positives = 23/72 (31%), Gaps = 5/72 (6%)
Query: 713 INNSLGVNRTPYEHLLRSQISPYANKPFQEILTSQNNAVNGSSSKTTKDRYACKYCGKVF 772
+NN + P I+ AN + + + Y C C F
Sbjct: 72 VNNDGDIITRP----TSDSIAAVAN-ATKPAAVVSDPQSMKVTPIVNPSSYVCNVCNARF 126
Query: 773 PRSANLTRHLRT 784
+ L+ HLR+
Sbjct: 127 STMSALSEHLRS 138
Score = 29.0 bits (64), Expect = 9.2
Identities = 8/38 (21%), Positives = 13/38 (34%)
Query: 16 QNNAVNGSSSKTTKDRYACKYCGKVFPRSANLTRHLRT 53
+ + Y C C F + L+ HLR+
Sbjct: 101 SDPQSMKVTPIVNPSSYVCNVCNARFSTMSALSEHLRS 138
Score = 29.0 bits (64), Expect = 9.7
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 219 QVHGRKFPCENCTKVFSDPSNLQRHIRTHH 248
V+ + C C FS S L H+R+ H
Sbjct: 111 IVNPSSYVCNVCNARFSTMSALSEHLRSDH 140
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription,
mRNA, multiprotein complex; HET: UTP; 2.30A
{Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A
1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A*
1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A*
1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ...
Length = 1733
Score = 29.7 bits (66), Expect = 6.6
Identities = 14/59 (23%), Positives = 23/59 (38%), Gaps = 2/59 (3%)
Query: 336 TTPGTTPSGQNSLSAMSHQTPGIPNPYLMYPRPGGTLPFYPPSLMPPYPGLFQPNQTPT 394
T+P +P+ + +P P+ P T P Y P+ P P+ +PT
Sbjct: 1566 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT--SPSYSPTSPSYSPT 1622
>2xoc_A E3 ubiquitin-protein ligase CHFR; zinc-binding, poly(ADP-ribose)
mitosis, antephase checkpoint, cell cycle; HET: PGE ADP
ADE; 1.89A {Homo sapiens} PDB: 2xoy_A* 2xoz_A* 2xp0_A
Length = 261
Score = 29.0 bits (64), Expect = 6.7
Identities = 16/112 (14%), Positives = 31/112 (27%), Gaps = 10/112 (8%)
Query: 197 QYRCESCSQTFCWRPHLNFHQAQVHGRKFPCENCTKVFSDPSNLQRHIRTHHVGARQHAC 256
+YR ++ C P Q G P + + + ++ H C
Sbjct: 30 EYRRQAAQPPHCPAPEGEPGAPQALGD-APS-TSVSLTTAVQDYVCPLQGSHAL-----C 82
Query: 257 QECGKTFATSSGLKQHTHIHSSVKPFRCEVCHKAYTQFSNLCRHKRMHANCR 308
C + ++ V P +C VC + + C +
Sbjct: 83 TCCFQPMPDRRVEREQDP---RVAPQQCAVCLQPFCHLYWGCTRTGCYGCLA 131
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane
protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP:
c.30.1.5 d.142.1.3 PDB: 1px2_A*
Length = 422
Score = 29.4 bits (65), Expect = 6.8
Identities = 22/141 (15%), Positives = 32/141 (22%), Gaps = 12/141 (8%)
Query: 330 KRFCDSTTPGTTPSGQNSLSAMSHQTPGIPNPYLMYPRPGGTLPFYPPSLMPPYPGLFQP 389
+R DS P+G M+ P P P P P P
Sbjct: 7 RRLSDSNFMANLPNG-----YMTDLQRPQPPP----PPPSAASPGATPGSAAASAERAST 57
Query: 390 NQTPTPHHPFLSNPLLFNQSMKSNEELDRAKININLSVEAYYRFQLQKNVQQSEEKRKNS 449
S L A + A + Q+ + +
Sbjct: 58 AAPVASPAAPSPGSSGGGGFFSS---LSNAVKQTTAAAAATFSEQVGGGSGGAGRGGAAA 114
Query: 450 PSPRKSDVPKTSGGKLFEFSE 470
D P T K F+ +
Sbjct: 115 RVLLVIDEPHTDWAKYFKGKK 135
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing,
mRNA splicing; NMR {Homo sapiens}
Length = 92
Score = 27.4 bits (61), Expect = 7.8
Identities = 13/70 (18%), Positives = 26/70 (37%), Gaps = 8/70 (11%)
Query: 224 KFPCENCTKVFSDPSNL--------QRHIRTHHVGARQHACQECGKTFATSSGLKQHTHI 275
+ C C + +D + IRT + + +H C C + + L + +
Sbjct: 13 ELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIANKFL 72
Query: 276 HSSVKPFRCE 285
+V F+ E
Sbjct: 73 RQAVNNFKNE 82
>3ov0_A Cytochrome C family protein; multiheme cytochrome C, electron
transfer, Fe reduction, GEO sulfurreducens; HET: HEM;
3.20A {Geobacter sulfurreducens}
Length = 318
Score = 28.9 bits (62), Expect = 7.8
Identities = 15/115 (13%), Positives = 33/115 (28%), Gaps = 6/115 (5%)
Query: 247 HHVGARQHACQECGKTFATSSGLKQHTHIHSSVKPFRCEVCHKAYTQFSNLCRHKRMHAN 306
H+ + C+ C K++T + K C CH FS + + +
Sbjct: 22 IHLKKYNNNCRICHIALFDLRKPKRYTMLDME-KGKSCGACHTGMKAFSVADDSQCVRCH 80
Query: 307 CRMQIKCVKC-----DQSFSTVTSLSKHKRFCDSTTPGTTPSGQNSLSAMSHQTP 356
+ FS + + C + +G +++ +
Sbjct: 81 SGSARPVAYRMKGAGEAVFSHEVHVPMLEGKCRTCHSNREITGGRNVTMAQMEKG 135
>2be7_D Aspartate carbamoyltransferase regulatory chain; atcase,
psychrophilic, cold adaptation, alloste holoenzyme;
2.85A {Moritella profunda}
Length = 153
Score = 28.1 bits (63), Expect = 8.2
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 50 HLRTHTGEQPYKCKYCERSFSI 71
++ G KCKYCE++FS
Sbjct: 125 SIKKTKGNIGLKCKYCEKTFSK 146
Score = 28.1 bits (63), Expect = 8.2
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 781 HLRTHTGEQPYKCKYCERSFSI 802
++ G KCKYCE++FS
Sbjct: 125 SIKKTKGNIGLKCKYCEKTFSK 146
>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc
finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus
musculus} PDB: 3av5_A* 3av6_A*
Length = 1330
Score = 29.2 bits (64), Expect = 8.3
Identities = 16/135 (11%), Positives = 43/135 (31%), Gaps = 4/135 (2%)
Query: 409 SMKSNEELDRAKININLSVEAYYRFQLQKNVQQSEEKRKNSPSPRKSDVPKTSGGKLFEF 468
+ + +E + ++ + + +K + + +K ++ P +S + +
Sbjct: 2 AKRRPKEAEPEQVAPETPEDRDEDEREEKRRKTTRKKLESHTVPVQSR-SERKAAQSKSV 60
Query: 469 SESKDSPPTAEEANSNQRPSPA---RPTISASNAVTYPDPREQLEVVTTDVKSDVNQKPR 525
+SP E P+ P + + + T+ P
Sbjct: 61 IPKINSPKCPECGQHLDDPNLKYQQHPEDAVDEPQMLTSEKLSIYDSTSTWFDTYEDSPM 120
Query: 526 DKLTNFSIDKLSGKM 540
+ T+FS+ G +
Sbjct: 121 HRFTSFSVYCSRGHL 135
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.0 bits (61), Expect = 8.5
Identities = 7/46 (15%), Positives = 18/46 (39%), Gaps = 21/46 (45%)
Query: 532 SIDKLSG--KMDSPKDEDASEESKPKKAKYCDQPLDLSIASKSSID 575
++ KL K+ + +S P ++A K++++
Sbjct: 21 ALKKLQASLKLYAD-------DSAP------------ALAIKATME 47
>3m1c_B GL, envelope glycoprotein L; glycoprotein H, GH/GL, envelope
protein, HER simplex virus, disulfide bond, HOST cell
MEMB HOST endosome; HET: NAG XYL; 3.00A {Human
herpesvirus 2}
Length = 204
Score = 28.5 bits (62), Expect = 8.6
Identities = 17/110 (15%), Positives = 33/110 (30%), Gaps = 3/110 (2%)
Query: 546 EDASEESKPKKAKYCDQPLDLSIASKSSIDSDKQDANETFVKTPATSPEIGKDESVINKS 605
ED S P + L + ++ S KQ + V+ + + + + +
Sbjct: 85 EDLSHSVFPADTQETTTRRALYKEIRDALGSRKQAVSHAPVRAGCVNFDYSRTRRCVGRR 144
Query: 606 SPTPPDDPVEESKRSPTPQIVSRSPSPIKNRSPSPPVSKANTTPMAYPKP 655
P + + S P+ + PPV + P P
Sbjct: 145 DLRPANTTSTWEPPVSSDDEASSQSKPL---ATQPPVLALSNAPPRRVSP 191
>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein,
helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis}
SCOP: g.37.1.4 g.37.1.4
Length = 127
Score = 28.0 bits (61), Expect = 8.7
Identities = 16/84 (19%), Positives = 24/84 (28%), Gaps = 6/84 (7%)
Query: 34 CKYCGKVFPRSANLTRHL--RTHTG--EQPYKCKYCERSFSISSNLQRHVRNIHNKEKPF 89
CK C V + H R H + E S +++
Sbjct: 35 CKVCSAVLISESQKLAHYQSRKHANKVRRYMAINQGEDSVPAKKFKAAPAEISDGEDRSK 94
Query: 90 KCPLCDRCFGQQTNLDRHL--KKH 111
CP+C+ F + H K H
Sbjct: 95 CCPVCNMTFSSPVVAESHYIGKTH 118
Score = 28.0 bits (61), Expect = 8.7
Identities = 16/84 (19%), Positives = 24/84 (28%), Gaps = 6/84 (7%)
Query: 765 CKYCGKVFPRSANLTRHL--RTHTG--EQPYKCKYCERSFSISSNLQRHVRNIHNKEKPF 820
CK C V + H R H + E S +++
Sbjct: 35 CKVCSAVLISESQKLAHYQSRKHANKVRRYMAINQGEDSVPAKKFKAAPAEISDGEDRSK 94
Query: 821 KCPLCDRCFGQQTNLDRHL--KKH 842
CP+C+ F + H K H
Sbjct: 95 CCPVCNMTFSSPVVAESHYIGKTH 118
>1z1n_X Sixteen heme cytochrome; electron transport; HET: NAG NAA HEC;
2.10A {Desulfovibrio gigas}
Length = 560
Score = 29.0 bits (62), Expect = 9.2
Identities = 19/152 (12%), Positives = 38/152 (25%), Gaps = 16/152 (10%)
Query: 165 GNNPPSPLIDVKDDDDNELEDHLITGHRYPPDQYRCESCSQTFCWRPHLNFHQAQVHGRK 224
P+ ++ E I + + +++ + +
Sbjct: 402 EAGFPTSGTQTLGKEEREATAAKILAAKDEKPKTVPLENVPEKLTLNYMDEKGDEWQAAE 461
Query: 225 FPCENCTKVFSDPSNLQRHIRTHHVGARQHACQECGKTFATSSGLKQHTHIHSSVKPFRC 284
FP + + + H A C C H + S+ P +C
Sbjct: 462 FPHRKIYQKLVEEAAKSPMANHFHGDALT-MCSGC------------HHNAKPSLNPPKC 508
Query: 285 EVCHKAYTQFSNLCRHKRMHANCRMQIKCVKC 316
CH Q + A +C+ C
Sbjct: 509 ASCHSKPFQERTANQPGLKGA---FHNQCIGC 537
>3ax1_A Serrate RNA effector molecule; miRNA processing, protein binding;
2.74A {Arabidopsis thaliana}
Length = 358
Score = 28.8 bits (63), Expect = 9.9
Identities = 10/40 (25%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 211 PHLNFHQAQVHGRKF--PCENCTKVFSDPSNLQRHIRTHH 248
PH+ + + +G K+ + CTK+F + +H++ H
Sbjct: 291 PHVRKIRDEKYGWKYGCGAKGCTKLFHAAEFVYKHLKLKH 330
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.313 0.130 0.392
Gapped
Lambda K H
0.267 0.0528 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 14,128,349
Number of extensions: 831136
Number of successful extensions: 4941
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3924
Number of HSP's successfully gapped: 1742
Length of query: 971
Length of database: 6,701,793
Length adjustment: 103
Effective length of query: 868
Effective length of database: 3,825,930
Effective search space: 3320907240
Effective search space used: 3320907240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 62 (28.1 bits)