BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14941
(513 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2O6L|A Chain A, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
pdb|2O6L|B Chain B, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
Length = 170
Score = 115 bits (289), Expect = 4e-26, Method: Composition-based stats.
Identities = 64/165 (38%), Positives = 93/165 (56%), Gaps = 6/165 (3%)
Query: 273 AKKLNEEMERFLNES-HNGVIYFSMGSMLKTSSFPPDKFKAFLKAFSKIPQRVLWKFEDN 331
AK L +E E F+ S NGV+ FS+GS + S+ ++ A ++IPQ+VLW+F+ N
Sbjct: 4 AKPLPKEXEDFVQSSGENGVVVFSLGSXV--SNXTEERANVIASALAQIPQKVLWRFDGN 61
Query: 332 DTSIFKPYKNIRTSSWMPQRDIFAHPNMKLFISHGGLLGITEAVYEGIPVLGIPVFGDQW 391
N R W+PQ D+ HP + FI+HGG GI EA+Y GIP +GIP+F DQ
Sbjct: 62 KPDTLG--LNTRLYKWIPQNDLLGHPKTRAFITHGGANGIYEAIYHGIPXVGIPLFADQP 119
Query: 392 ANIKKLESLKAGKLLPYLEITEETVSDALKIVLS-PEYKENAEDL 435
NI ++ A + + + + +ALK V++ P YKEN L
Sbjct: 120 DNIAHXKARGAAVRVDFNTXSSTDLLNALKRVINDPSYKENVXKL 164
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 55/224 (24%), Positives = 104/224 (46%), Gaps = 32/224 (14%)
Query: 223 IIHKYFPEIPRIQDLLNTCSLTLVNTHHTINIARPLPAN--------VVEIGGIHVK-PA 273
++HK E+PR + +N+ TI+ PL N ++ +G ++ P
Sbjct: 205 MLHKMGLELPR-------ANAVAINSFATIH---PLIENELNSKFKLLLNVGPFNLTTPQ 254
Query: 274 KKLNEE---MERFLNESHNGVIYFSMGSMLKTSSFPPDKFKAFLKAFSKIPQRVLWKFED 330
+K+++E +E ++ V+Y S GS++ PP + A ++ + +W F
Sbjct: 255 RKVSDEHGCLEWLDQHENSSVVYISFGSVVTP---PPHELTALAESLEECGFPFIWSFRG 311
Query: 331 NDTSIFKPYKNIRTS------SWMPQRDIFAHPNMKLFISHGGLLGITEAVYEGIPVLGI 384
+ RT +W PQ +I H ++ +F++H G + E + G+P++
Sbjct: 312 DPKEKLPKGFLERTKTKGKIVAWAPQVEILKHSSVGVFLTHSGWNSVLECIVGGVPMISR 371
Query: 385 PVFGDQWANIKKLES-LKAGKLLPYLEITEETVSDALKIVLSPE 427
P FGDQ N ES L+ G + +T+E++ AL++ +S E
Sbjct: 372 PFFGDQGLNTILTESVLEIGVGVDNGVLTKESIKKALELTMSSE 415
>pdb|2IYA|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYA|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 424
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 341 NIRTSSWMPQRDIFAHPNMKLFISHGGLLGITEAVYEGIPVLGIPVFGDQWANIKKLESL 400
N+ W+PQ DI FI+H G+ EA+ +P++ +P +Q N +++ L
Sbjct: 306 NVEVHQWVPQLDILT--KASAFITHAGMGSTMEALSNAVPMVAVPQIAEQTMNAERIVEL 363
Query: 401 KAGKLLPYLEITEETVSDALKIVLS 425
G+ +P ++T E + +A+ V S
Sbjct: 364 GLGRHIPRDQVTAEKLREAVLAVAS 388
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 58/119 (48%), Gaps = 15/119 (12%)
Query: 291 VIYFSMGSMLKTSSFPPDKFKAFLKAF--SKIPQRVLWKFEDNDTSIFKPYKNIRTSS-- 346
V+Y S G++ ++ PP + A +A S++P +W D + P + +
Sbjct: 273 VVYISFGTV---TTPPPAEVVALSEALEASRVP--FIWSLRDK-ARVHLPEGFLEKTRGY 326
Query: 347 -----WMPQRDIFAHPNMKLFISHGGLLGITEAVYEGIPVLGIPVFGDQWANIKKLESL 400
W PQ ++ AH + F++H G + E+V G+P++ P FGDQ N + +E +
Sbjct: 327 GMVVPWAPQAEVLAHEAVGAFVTHCGWNSLWESVAGGVPLICRPFFGDQRLNGRMVEDV 385
>pdb|2IYF|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYF|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 430
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 67/163 (41%), Gaps = 23/163 (14%)
Query: 291 VIYFSMGSMLKTSSFPPDKFKAFLKAFSKIPQRVLWKFEDNDTSIFKPYK------NIRT 344
V+ S+GS P ++ ++AF +P W P + N+
Sbjct: 234 VVLVSLGSAFTKQ---PAFYRECVRAFGNLPG---WHLVLQIGRKVTPAELGELPDNVEV 287
Query: 345 SSWMPQRDIFAHPNMKLFISHGGLLGITEAVYEGIPVLGIPVFGDQWANIKKLESLKAGK 404
W+PQ I + LF++H G G E + P++ +P DQ+ N L+ L +
Sbjct: 288 HDWVPQLAILRQAD--LFVTHAGAGGSQEGLATATPMIAVPQAVDQFGNADMLQGLGVAR 345
Query: 405 LLPYLEITEETVSD-ALKIVLSPE--------YKENAEDLGTR 438
L E T + + + AL +V PE E A++ GTR
Sbjct: 346 KLATEEATADLLRETALALVDDPEVARRLRRIQAEMAQEGGTR 388
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 64/150 (42%), Gaps = 19/150 (12%)
Query: 257 PLPANVVEIGGIHVKPA------KKLNEEMERFLNESHNGVIYFSMGSMLKTSSFPPDKF 310
PLP+ + + IH + K+ E ++ ++ V+Y + GS T+ P++
Sbjct: 257 PLPSLLKQTPQIHQLDSLDSNLWKEDTECLDWLESKEPGSVVYVNFGS---TTVMTPEQL 313
Query: 311 KAFLKAFSKIPQRVLWKFEDN----DTSIFKP------YKNIRTSSWMPQRDIFAHPNMK 360
F + + LW + + IF +SW PQ + HP++
Sbjct: 314 LEFAWGLANCKKSFLWIIRPDLVIGGSVIFSSEFTNEIADRGLIASWCPQDKVLNHPSIG 373
Query: 361 LFISHGGLLGITEAVYEGIPVLGIPVFGDQ 390
F++H G TE++ G+P+L P F DQ
Sbjct: 374 GFLTHCGWNSTTESICAGVPMLCWPFFADQ 403
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 60/139 (43%), Gaps = 14/139 (10%)
Query: 271 KPAKKLNEEME----RFLNESHN-GVIYFSMGSMLKTSSFPPDKFKAFLKAFSKIPQRVL 325
+P KL++ ++L+E + V++ GSM SF P + + R L
Sbjct: 253 QPNPKLDQAQHDLILKWLDEQPDKSVVFLCFGSM--GVSFGPSQIREIALGLKHSGVRFL 310
Query: 326 WK-------FEDNDTSIFKPYKNIRTSSWMPQRDIFAHPNMKLFISHGGLLGITEAVYEG 378
W F + + W PQ ++ AH + F+SH G I E+++ G
Sbjct: 311 WSNSAEKKVFPEGFLEWMELEGKGMICGWAPQVEVLAHKAIGGFVSHCGWNSILESMWFG 370
Query: 379 IPVLGIPVFGDQWANIKKL 397
+P+L P++ +Q N +L
Sbjct: 371 VPILTWPIYAEQQLNAFRL 389
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
Length = 465
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 60/139 (43%), Gaps = 14/139 (10%)
Query: 271 KPAKKLNEEME----RFLNESHN-GVIYFSMGSMLKTSSFPPDKFKAFLKAFSKIPQRVL 325
+P KL++ ++L+E + V++ GSM SF P + + R L
Sbjct: 253 QPNPKLDQAQHDLILKWLDEQPDKSVVFLCFGSM--GVSFGPSQIREIALGLKHSGVRFL 310
Query: 326 WK-------FEDNDTSIFKPYKNIRTSSWMPQRDIFAHPNMKLFISHGGLLGITEAVYEG 378
W F + + W PQ ++ AH + F+SH G I E+++ G
Sbjct: 311 WSNSAEKKVFPEGFLEWMELEGKGMICGWAPQVEVLAHKAIGGFVSHCGWNSILESMWFG 370
Query: 379 IPVLGIPVFGDQWANIKKL 397
+P+L P++ +Q N +L
Sbjct: 371 VPILTWPIYAEQQLNAFRL 389
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 27/47 (57%)
Query: 347 WMPQRDIFAHPNMKLFISHGGLLGITEAVYEGIPVLGIPVFGDQWAN 393
W PQ + AHP+ F++H G E+V GIP++ P++ +Q N
Sbjct: 346 WAPQAQVLAHPSTGGFLTHCGWNSTLESVVSGIPLIAWPLYAEQKMN 392
>pdb|3IA7|A Chain A, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
pdb|3IA7|B Chain B, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
Length = 402
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 64/134 (47%), Gaps = 8/134 (5%)
Query: 291 VIYFSMGSMLKTSSFPPDKFKAFLKAFSKIPQRVLWKFEDN-DTSIFKPYK-NIRTSSWM 348
V+ S+G+ P+ F+A +AF+ P V+ D ++ P N+ W+
Sbjct: 233 VLLVSLGNQFNEH---PEFFRACAQAFADTPWHVVXAIGGFLDPAVLGPLPPNVEAHQWI 289
Query: 349 PQRDIFAHPNMKLFISHGGLLGITEAVYEGIPVLGIPVFGDQWA-NIKKLESLKAGKLLP 407
P + AH + ++HG + EA G+P++ +P F + A + +++ L G +L
Sbjct: 290 PFHSVLAH--ARACLTHGTTGAVLEAFAAGVPLVLVPHFATEAAPSAERVIELGLGSVLR 347
Query: 408 YLEITEETVSDALK 421
++ ++ +A++
Sbjct: 348 PDQLEPASIREAVE 361
>pdb|2YJN|A Chain A, Structure Of The Glycosyltransferase Eryciii From The
Erythromycin Biosynthetic Pathway, In Complex With Its
Activating Partner, Erycii
Length = 441
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/170 (21%), Positives = 68/170 (40%), Gaps = 11/170 (6%)
Query: 285 NESHNGVIYFSMGSMLKTSSFPPDKFKAFLKAFSKIPQRVLWKFEDND-TSIFKPYKNIR 343
+E + ++G + +S + L A + ++ F+ + N+R
Sbjct: 263 DEPERRRVCLTLGISSRENSIGQVSIEELLGAVGDVDAEIIATFDAQQLEGVANIPDNVR 322
Query: 344 TSSWMPQRDIFAHPNMKLFISHGGLLGITEAVYEGIPVLGIPVFGDQWANIKKLESLKAG 403
T ++P + P + HGG A G+P + +P D ++ + AG
Sbjct: 323 TVGFVPMHALL--PTCAATVHHGGPGSWHTAAIHGVPQVILPDGWDTGVRAQRTQEFGAG 380
Query: 404 KLLPYLEITEETVSDALKIVL-SPEYKENAEDLGTRFRD---RPQSPLEV 449
LP E+T + + +++K VL P ++ A R RD SP EV
Sbjct: 381 IALPVPELTPDQLRESVKRVLDDPAHRAGA----ARMRDDMLAEPSPAEV 426
>pdb|3OTG|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp Bound Form
pdb|3OTH|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
pdb|3OTH|B Chain B, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
Length = 412
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 46/87 (52%), Gaps = 2/87 (2%)
Query: 341 NIRTSSWMPQRDIFAHPNMKLFISHGGLLGITEAVYEGIPVLGIPVFGDQWANIKKLESL 400
N+R SW+PQ + P++ L + HGG A+ G+P L P GD +AN + +
Sbjct: 293 NVRLESWVPQAALL--PHVDLVVHHGGSGTTLGALGAGVPQLSFPWAGDSFANAQAVAQA 350
Query: 401 KAGKLLPYLEITEETVSDALKIVLSPE 427
AG L I+ ++VS A K +L+ E
Sbjct: 351 GAGDHLLPDNISPDSVSGAAKRLLAEE 377
>pdb|3IAA|A Chain A, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp Bound Form
pdb|3IAA|B Chain B, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp Bound Form
Length = 416
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/128 (21%), Positives = 56/128 (43%), Gaps = 7/128 (5%)
Query: 291 VIYFSMGSMLKTSSFPPDKFKAFLKAFSKIPQRVLWKF--EDNDTSIFKPYKNIRTSSWM 348
V+ S+G+ P F+ +AF P V+ + + ++ N+ W+
Sbjct: 249 VVLVSLGTTFNDR---PGFFRDCARAFDGQPWHVVXTLGGQVDPAALGDLPPNVEAHRWV 305
Query: 349 PQRDIFAHPNMKLFISHGGLLGITEAVYEGIPVLGIPVFGDQWANIKKLESLKAGKLLPY 408
P + + ++HGG + EA+Y G P++ +P D ++++ L G +LP
Sbjct: 306 PHVKVLEQ--ATVCVTHGGXGTLXEALYWGRPLVVVPQSFDVQPXARRVDQLGLGAVLPG 363
Query: 409 LEITEETV 416
+ +T+
Sbjct: 364 EKADGDTL 371
>pdb|3RSC|A Chain A, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp And Calicheamicin T0 Bound Form
pdb|3RSC|B Chain B, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp And Calicheamicin T0 Bound Form
Length = 415
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/128 (21%), Positives = 56/128 (43%), Gaps = 7/128 (5%)
Query: 291 VIYFSMGSMLKTSSFPPDKFKAFLKAFSKIPQRVLWKF--EDNDTSIFKPYKNIRTSSWM 348
V+ S+G+ P F+ +AF P V+ + + ++ N+ W+
Sbjct: 249 VVLVSLGTTFNDR---PGFFRDCARAFDGQPWHVVXTLGGQVDPAALGDLPPNVEAHRWV 305
Query: 349 PQRDIFAHPNMKLFISHGGLLGITEAVYEGIPVLGIPVFGDQWANIKKLESLKAGKLLPY 408
P + + ++HGG + EA+Y G P++ +P D ++++ L G +LP
Sbjct: 306 PHVKVLEQ--ATVCVTHGGXGTLXEALYWGRPLVVVPQSFDVQPXARRVDQLGLGAVLPG 363
Query: 409 LEITEETV 416
+ +T+
Sbjct: 364 EKADGDTL 371
>pdb|4G2T|A Chain A, Crystal Structure Of Streptomyces Sp. Sf2575
Glycosyltransferase Ssfs6, Complexed With Thymidine
Diphosphate
Length = 397
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 1/88 (1%)
Query: 357 PNMKLFISHGGLLGITEAVYEGIPVLGIPVFGDQWANIKKLESLKAGKLLPYLEITEETV 416
P + + HGG + EG+P + +PV + W + + L + AG +P+ + E+V
Sbjct: 298 PACDVVVHHGGHGTTLTCLSEGVPQVSVPVIAEVWDSARLLHAAGAGVEVPWEQAGVESV 357
Query: 417 SDAL-KIVLSPEYKENAEDLGTRFRDRP 443
A +I Y NA L P
Sbjct: 358 LAACARIRDDSSYVGNARRLAAEXATLP 385
>pdb|4FZR|A Chain A, Crystal Structure Of Ssfs6, Streptomyces Sp. Sf2575
Glycosyltransferase
Length = 398
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 1/88 (1%)
Query: 357 PNMKLFISHGGLLGITEAVYEGIPVLGIPVFGDQWANIKKLESLKAGKLLPYLEITEETV 416
P + + HGG + EG+P + +PV + W + + L + AG +P+ + E+V
Sbjct: 299 PACDVVVHHGGHGTTLTCLSEGVPQVSVPVIAEVWDSARLLHAAGAGVEVPWEQAGVESV 358
Query: 417 SDAL-KIVLSPEYKENAEDLGTRFRDRP 443
A +I Y NA L P
Sbjct: 359 LAACARIRDDSSYVGNARRLAAEXATLP 386
>pdb|2P6P|A Chain A, X-Ray Crystal Structure Of C-C Bond-Forming
Dtdp-D-Olivose-Transferase Urdgt2
pdb|2P6P|B Chain B, X-Ray Crystal Structure Of C-C Bond-Forming
Dtdp-D-Olivose-Transferase Urdgt2
Length = 384
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 65/174 (37%), Gaps = 14/174 (8%)
Query: 269 HVKPAKKLNEEMERFLNESHNGVIYFSMGSMLKTSSFPPDKFKAFLKAFSKIPQRVLWKF 328
HV +++ E + ++ V+ S GS + S+ D+ FL+ +K V W
Sbjct: 191 HVATSRQCPLEPWMYTRDTRQRVLVTS-GSRVAKESY--DRNFDFLRGLAK--DLVRWDV 245
Query: 329 E------DNDTSIFKPYKNIRTSSWMPQRDIFAHPNMKLFISHGGLLGITEAVYEGIPVL 382
E D + W P D+ A P L + H G + + G+P L
Sbjct: 246 ELIVAAPDTVAEALRAEVPQARVGWTPL-DVVA-PTCDLLVHHAGGVSTLTGLSAGVPQL 303
Query: 383 GIPVFGDQWANIKKLESLKAG-KLLPYLEITEETVSDALKIVLSPEYKENAEDL 435
IP A +++ A LLP + TE ++ Y A+DL
Sbjct: 304 LIPKGSVLEAPARRVADYGAAIALLPGEDSTEAIADSCQELQAKDTYARRAQDL 357
>pdb|2ZYK|A Chain A, Crystal Structure Of CycloMALTODEXTRIN-Binding Protein
Complexed With Gamma-Cyclodextrin
pdb|2ZYK|B Chain B, Crystal Structure Of CycloMALTODEXTRIN-Binding Protein
Complexed With Gamma-Cyclodextrin
pdb|2ZYK|C Chain C, Crystal Structure Of CycloMALTODEXTRIN-Binding Protein
Complexed With Gamma-Cyclodextrin
pdb|2ZYK|D Chain D, Crystal Structure Of CycloMALTODEXTRIN-Binding Protein
Complexed With Gamma-Cyclodextrin
pdb|2ZYM|A Chain A, Crystal Structure Of CycloMALTODEXTRIN-Binding Protein
Complexed With Alpha-Cyclodextrin
pdb|2ZYN|A Chain A, Crystal Structure Of CycloMALTODEXTRIN-Binding Protein
Complexed With Beta-Cyclodextrin
pdb|2ZYO|A Chain A, Crystal Structure Of CycloMALTODEXTRIN-Binding Protein
Complexed With Maltotetraose
Length = 397
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 55/114 (48%), Gaps = 13/114 (11%)
Query: 313 FLKAFSKIPQRV--LWKFEDNDTSIFKPYKNIRTSSWMPQRDIFAHPNMKLFISHGGLLG 370
+L A+SK P+ L +F + ++ +K T PQ+++ P +K ++ + G
Sbjct: 285 YLSAYSKYPKYATELMQFLTSKEALASRFK--ETGEIPPQKELLNDPMIK---NNPVVNG 339
Query: 371 ITEAVYEGIPVLGIPVFGDQWANIKKLESLKA-GKLLPYLEITEETVSDALKIV 423
+ +G+P+ IP G W I + A GK P E+ ++DA+KI+
Sbjct: 340 FAKQASKGVPMPSIPEMGVVWEPINNAHTFVAQGKQTP-----EQALNDAVKIM 388
>pdb|2PMV|A Chain A, Crystal Structure Of Human Intrinsic Factor- Cobalamin
Complex At 2.6 A Resolution
pdb|2PMV|B Chain B, Crystal Structure Of Human Intrinsic Factor- Cobalamin
Complex At 2.6 A Resolution
pdb|2PMV|C Chain C, Crystal Structure Of Human Intrinsic Factor- Cobalamin
Complex At 2.6 A Resolution
pdb|2PMV|D Chain D, Crystal Structure Of Human Intrinsic Factor- Cobalamin
Complex At 2.6 A Resolution
Length = 399
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 32/76 (42%), Gaps = 6/76 (7%)
Query: 121 ENMKSIWNMENKYDLIITEM----FLTDAFL--VIPYLYKVPYISIASSTLHPQHSERLG 174
E K WN + D+I+ E+ F + ++P L Y+ + T P H +
Sbjct: 220 EPSKKEWNCKKTTDMILNEIKQGKFHNPMSIAQILPSLKGKTYLDVPQVTCSPDHEVQPT 279
Query: 175 LPDNPSYIPSYVSAYT 190
LP NP P+ S T
Sbjct: 280 LPSNPGPGPTSASNIT 295
>pdb|3KQ4|A Chain A, Structure Of Intrinsic Factor-Cobalamin Bound To Its
Receptor Cubilin
pdb|3KQ4|C Chain C, Structure Of Intrinsic Factor-Cobalamin Bound To Its
Receptor Cubilin
pdb|3KQ4|E Chain E, Structure Of Intrinsic Factor-Cobalamin Bound To Its
Receptor Cubilin
Length = 393
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 32/76 (42%), Gaps = 6/76 (7%)
Query: 121 ENMKSIWNMENKYDLIITEM----FLTDAFL--VIPYLYKVPYISIASSTLHPQHSERLG 174
E K WN + D+I+ E+ F + ++P L Y+ + T P H +
Sbjct: 214 EPSKKEWNCKKTTDMILNEIKQGKFHNPMSIAQILPSLKGKTYLDVPQVTCSPDHEVQPT 273
Query: 175 LPDNPSYIPSYVSAYT 190
LP NP P+ S T
Sbjct: 274 LPSNPGPGPTSASNIT 289
>pdb|3TTM|A Chain A, Crystal Structure Of Spud In Complex With Putrescine
pdb|3TTM|B Chain B, Crystal Structure Of Spud In Complex With Putrescine
Length = 346
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 21/99 (21%), Positives = 42/99 (42%), Gaps = 4/99 (4%)
Query: 418 DALKIVLSPEYKENAEDLGTRFRDRPQSPLEVAIYWIEYVIKYNGAYHLQSAA---VKLT 474
D+ +V PE + + G F D P L A++++ Y + L++A +K+
Sbjct: 136 DSWDLVFKPENIQKLKQCGVSFLDSPTEILPAALHYLGYKPDTDNPKELKAAEELFLKIR 195
Query: 475 WYQYYLLDIALVLIVGLVSVCFVLKYLCGSLVRRKHKTE 513
Y Y + + ++C + Y G + + K + E
Sbjct: 196 PYVTYFHSSKYISDLANGNICVAIGY-SGDIYQAKSRAE 233
>pdb|3TTK|A Chain A, Crystal Structure Of Apo-Spud
pdb|3TTK|B Chain B, Crystal Structure Of Apo-Spud
pdb|3TTK|C Chain C, Crystal Structure Of Apo-Spud
Length = 345
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 21/99 (21%), Positives = 42/99 (42%), Gaps = 4/99 (4%)
Query: 418 DALKIVLSPEYKENAEDLGTRFRDRPQSPLEVAIYWIEYVIKYNGAYHLQSAA---VKLT 474
D+ +V PE + + G F D P L A++++ Y + L++A +K+
Sbjct: 136 DSWDLVFKPENIQKLKQCGVSFLDSPTEILPAALHYLGYKPDTDNPKELKAAEELFLKIR 195
Query: 475 WYQYYLLDIALVLIVGLVSVCFVLKYLCGSLVRRKHKTE 513
Y Y + + ++C + Y G + + K + E
Sbjct: 196 PYVTYFHSSKYISDLANGNICVAIGY-SGDIYQAKSRAE 233
>pdb|3OMV|A Chain A, Crystal Structure Of C-Raf (Raf-1)
pdb|3OMV|B Chain B, Crystal Structure Of C-Raf (Raf-1)
Length = 307
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Query: 52 YQRGHDLTVITQYPETLVHYERMKVLDIKGTHTYNSTIEDIYELSADSIKRIHI-NFIDQ 110
Y +L ++TQ+ E Y K L ++ T + DI +A + +H N I +
Sbjct: 100 YMTKDNLAIVTQWCEGSSLY---KHLHVQETKFQMFQLIDIARQTAQGMDYLHAKNIIHR 156
Query: 111 EIQVENIFLHENM 123
+++ NIFLHE +
Sbjct: 157 DMKSNNIFLHEGL 169
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,473,578
Number of Sequences: 62578
Number of extensions: 653185
Number of successful extensions: 1468
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 1446
Number of HSP's gapped (non-prelim): 43
length of query: 513
length of database: 14,973,337
effective HSP length: 103
effective length of query: 410
effective length of database: 8,527,803
effective search space: 3496399230
effective search space used: 3496399230
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)