Query psy14941
Match_columns 513
No_of_seqs 240 out of 2449
Neff 9.8
Searched_HMMs 46136
Date Fri Aug 16 16:23:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14941.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14941hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PHA03392 egt ecdysteroid UDP-g 100.0 1.7E-86 3.8E-91 677.9 55.4 463 23-490 17-498 (507)
2 PF00201 UDPGT: UDP-glucoronos 100.0 1.8E-86 3.9E-91 690.9 0.3 474 27-511 1-499 (500)
3 KOG1192|consensus 100.0 1.1E-54 2.5E-59 452.4 47.5 453 25-486 5-481 (496)
4 PLN02670 transferase, transfer 100.0 1.7E-48 3.6E-53 391.6 33.2 402 26-460 6-465 (472)
5 PLN02208 glycosyltransferase f 100.0 9.2E-48 2E-52 385.4 33.3 389 26-457 4-437 (442)
6 PLN02562 UDP-glycosyltransfera 100.0 5.4E-47 1.2E-51 382.1 35.2 372 26-442 6-430 (448)
7 PLN02207 UDP-glycosyltransfera 100.0 5.1E-47 1.1E-51 380.5 32.4 376 26-441 3-444 (468)
8 PLN02554 UDP-glycosyltransfera 100.0 2.6E-45 5.5E-50 374.1 34.3 384 27-460 3-479 (481)
9 PLN02410 UDP-glucoronosyl/UDP- 100.0 7.9E-45 1.7E-49 365.2 33.2 368 26-441 7-429 (451)
10 PLN02863 UDP-glucoronosyl/UDP- 100.0 2.9E-44 6.3E-49 363.6 34.3 400 24-460 7-472 (477)
11 PLN03004 UDP-glycosyltransfera 100.0 8.6E-45 1.9E-49 363.3 29.9 372 27-441 4-440 (451)
12 PLN03007 UDP-glucosyltransfera 100.0 5.3E-45 1.2E-49 372.3 29.0 383 25-442 4-460 (482)
13 PLN02992 coniferyl-alcohol glu 100.0 2.2E-44 4.7E-49 362.2 32.2 372 26-441 5-446 (481)
14 PLN02210 UDP-glucosyl transfer 100.0 1.2E-44 2.7E-49 365.3 29.7 371 25-441 7-434 (456)
15 PLN00414 glycosyltransferase f 100.0 4.6E-44 9.9E-49 359.2 31.9 395 25-460 3-441 (446)
16 PLN02764 glycosyltransferase f 100.0 1E-43 2.3E-48 354.0 33.4 397 26-460 5-446 (453)
17 PLN02555 limonoid glucosyltran 100.0 2.5E-43 5.4E-48 355.5 35.2 393 25-460 6-470 (480)
18 PLN02173 UDP-glucosyl transfer 100.0 2.7E-43 6E-48 352.3 35.1 368 27-440 6-426 (449)
19 PLN02152 indole-3-acetate beta 100.0 2.3E-43 4.9E-48 353.5 34.2 373 27-441 4-435 (455)
20 PLN02448 UDP-glycosyltransfera 100.0 3E-43 6.6E-48 357.7 30.7 376 23-442 7-437 (459)
21 PLN02167 UDP-glycosyltransfera 100.0 2E-42 4.2E-47 352.4 32.4 376 26-441 3-451 (475)
22 PLN00164 glucosyltransferase; 100.0 4.2E-42 9.2E-47 349.1 34.7 387 26-459 3-473 (480)
23 PLN02534 UDP-glycosyltransfera 100.0 1.8E-42 3.9E-47 349.7 31.2 401 26-459 8-486 (491)
24 PLN03015 UDP-glucosyl transfer 100.0 3.3E-42 7.1E-47 344.3 31.0 370 27-442 4-448 (470)
25 cd03784 GT1_Gtf_like This fami 100.0 2.4E-41 5.1E-46 342.8 35.9 389 27-456 1-400 (401)
26 TIGR01426 MGT glycosyltransfer 100.0 3.8E-41 8.3E-46 339.7 30.6 380 33-459 1-391 (392)
27 COG1819 Glycosyl transferases, 100.0 2.7E-40 5.8E-45 329.3 24.6 388 27-462 2-403 (406)
28 PF13528 Glyco_trans_1_3: Glyc 99.9 1.8E-24 4E-29 212.2 24.4 312 27-423 1-317 (318)
29 PRK12446 undecaprenyldiphospho 99.9 3.8E-23 8.2E-28 203.7 30.5 329 28-456 3-351 (352)
30 TIGR00661 MJ1255 conserved hyp 99.9 4.7E-22 1E-26 194.7 23.4 309 28-429 1-318 (321)
31 COG0707 MurG UDP-N-acetylgluco 99.9 3.1E-20 6.7E-25 180.7 30.6 336 28-458 2-355 (357)
32 PRK00726 murG undecaprenyldiph 99.8 3.4E-19 7.5E-24 177.8 26.1 162 288-459 182-356 (357)
33 cd03785 GT1_MurG MurG is an N- 99.8 2.4E-17 5.1E-22 164.1 28.5 329 28-452 1-349 (350)
34 PRK13609 diacylglycerol glucos 99.8 4.7E-16 1E-20 156.5 28.8 156 288-458 201-369 (380)
35 PRK13608 diacylglycerol glucos 99.7 6.9E-16 1.5E-20 155.3 27.0 158 288-459 201-370 (391)
36 TIGR01133 murG undecaprenyldip 99.7 1E-15 2.3E-20 152.2 24.5 100 349-452 243-346 (348)
37 PLN02605 monogalactosyldiacylg 99.7 7.8E-15 1.7E-19 147.4 26.1 128 322-458 242-379 (382)
38 COG4671 Predicted glycosyl tra 99.7 1E-14 2.3E-19 135.1 21.0 317 24-424 7-363 (400)
39 TIGR03590 PseG pseudaminic aci 99.6 4.7E-14 1E-18 134.6 18.9 99 289-396 170-278 (279)
40 TIGR00215 lpxB lipid-A-disacch 99.6 3.5E-14 7.7E-19 142.1 18.5 157 288-454 190-382 (385)
41 PF04101 Glyco_tran_28_C: Glyc 99.5 4.8E-16 1E-20 137.2 -1.3 135 291-433 1-152 (167)
42 cd03814 GT1_like_2 This family 99.5 1.3E-11 2.8E-16 122.9 25.4 138 288-440 195-347 (364)
43 PRK00025 lpxB lipid-A-disaccha 99.4 5.1E-12 1.1E-16 127.3 17.9 165 289-460 186-377 (380)
44 cd03794 GT1_wbuB_like This fam 99.3 1.3E-09 2.7E-14 109.3 26.1 140 288-441 218-381 (394)
45 cd03823 GT1_ExpE7_like This fa 99.3 3.6E-10 7.9E-15 112.2 21.7 137 288-438 189-342 (359)
46 cd03818 GT1_ExpC_like This fam 99.3 8.1E-09 1.7E-13 104.6 30.1 92 339-438 280-379 (396)
47 PLN02871 UDP-sulfoquinovose:DA 99.2 4.1E-09 8.9E-14 108.9 26.6 137 289-439 262-414 (465)
48 COG3980 spsG Spore coat polysa 99.2 4.8E-10 1E-14 101.4 16.8 144 288-441 157-309 (318)
49 TIGR03492 conserved hypothetic 99.2 1.1E-09 2.4E-14 109.9 21.3 158 288-457 204-395 (396)
50 cd03808 GT1_cap1E_like This fa 99.2 1.9E-09 4.1E-14 106.6 23.0 138 288-439 186-343 (359)
51 cd03801 GT1_YqgM_like This fam 99.2 6.3E-09 1.4E-13 103.1 26.1 135 288-437 197-353 (374)
52 cd03820 GT1_amsD_like This fam 99.2 8.2E-09 1.8E-13 101.6 26.3 139 288-440 176-334 (348)
53 cd04962 GT1_like_5 This family 99.2 8.3E-09 1.8E-13 103.4 26.5 152 288-454 195-365 (371)
54 cd03805 GT1_ALG2_like This fam 99.1 3.8E-08 8.2E-13 99.5 27.7 90 339-437 279-376 (392)
55 cd03817 GT1_UGDG_like This fam 99.1 7E-09 1.5E-13 103.4 22.0 134 288-437 200-355 (374)
56 cd03800 GT1_Sucrose_synthase T 99.1 4.2E-08 9.1E-13 99.2 27.5 137 288-439 218-382 (398)
57 cd03795 GT1_like_4 This family 99.1 3.4E-08 7.4E-13 98.2 25.9 137 288-439 189-346 (357)
58 cd03821 GT1_Bme6_like This fam 99.1 5.3E-08 1.1E-12 97.0 25.3 136 288-439 201-359 (375)
59 PRK10307 putative glycosyl tra 99.1 7.1E-07 1.5E-11 90.9 32.3 144 288-445 227-393 (412)
60 cd03822 GT1_ecORF704_like This 99.0 1.5E-07 3.3E-12 93.6 26.9 104 339-452 246-360 (366)
61 cd03816 GT1_ALG1_like This fam 99.0 1.9E-07 4.1E-12 95.0 27.2 137 288-440 230-399 (415)
62 cd03799 GT1_amsK_like This is 99.0 5.5E-08 1.2E-12 96.6 22.5 134 288-436 177-338 (355)
63 cd03811 GT1_WabH_like This fam 99.0 3.5E-08 7.5E-13 97.2 20.8 132 288-434 187-341 (353)
64 cd04951 GT1_WbdM_like This fam 99.0 4.7E-08 1E-12 97.3 21.9 133 288-437 186-339 (360)
65 cd05844 GT1_like_7 Glycosyltra 99.0 1.5E-07 3.2E-12 94.2 25.2 90 339-436 244-347 (367)
66 cd03798 GT1_wlbH_like This fam 99.0 2.5E-07 5.4E-12 91.9 26.6 126 288-428 200-347 (377)
67 PF04007 DUF354: Protein of un 99.0 2E-07 4.3E-12 90.2 24.5 327 28-458 2-334 (335)
68 TIGR03449 mycothiol_MshA UDP-N 99.0 2.5E-07 5.5E-12 94.0 25.9 94 339-440 282-383 (405)
69 PF03033 Glyco_transf_28: Glyc 99.0 7.1E-10 1.5E-14 94.5 5.3 128 29-165 1-132 (139)
70 cd03825 GT1_wcfI_like This fam 98.9 6.5E-07 1.4E-11 89.3 26.0 93 339-439 243-344 (365)
71 PRK05749 3-deoxy-D-manno-octul 98.9 1.1E-06 2.4E-11 89.9 27.8 100 352-457 315-420 (425)
72 cd03807 GT1_WbnK_like This fam 98.9 4.8E-07 1E-11 89.7 24.1 133 288-436 191-343 (365)
73 cd03802 GT1_AviGT4_like This f 98.9 9.5E-07 2.1E-11 87.0 25.4 119 290-424 171-306 (335)
74 cd03812 GT1_CapH_like This fam 98.9 2.9E-07 6.3E-12 91.6 21.5 134 288-437 190-343 (358)
75 cd03819 GT1_WavL_like This fam 98.9 7E-07 1.5E-11 88.8 23.9 93 339-439 245-345 (355)
76 cd03796 GT1_PIG-A_like This fa 98.9 7.6E-07 1.7E-11 90.2 24.3 122 288-426 191-334 (398)
77 TIGR02472 sucr_P_syn_N sucrose 98.8 2.7E-06 5.8E-11 87.3 27.7 138 289-438 247-419 (439)
78 cd03786 GT1_UDP-GlcNAc_2-Epime 98.8 1.8E-07 4E-12 93.5 17.5 134 288-433 197-345 (363)
79 cd04955 GT1_like_6 This family 98.8 2.9E-06 6.3E-11 84.6 25.3 129 292-439 195-344 (363)
80 cd03792 GT1_Trehalose_phosphor 98.8 4E-06 8.7E-11 84.1 25.5 151 288-455 188-367 (372)
81 TIGR03088 stp2 sugar transfera 98.8 4.2E-06 9.2E-11 84.0 25.5 139 288-437 192-350 (374)
82 cd03809 GT1_mtfB_like This fam 98.7 9E-07 1.9E-11 88.1 19.8 136 288-440 193-351 (365)
83 TIGR02149 glgA_Coryne glycogen 98.7 3E-05 6.5E-10 78.2 30.2 139 288-438 199-365 (388)
84 TIGR02468 sucrsPsyn_pln sucros 98.7 3E-05 6.5E-10 84.8 30.9 166 278-458 468-669 (1050)
85 TIGR00236 wecB UDP-N-acetylglu 98.6 4.3E-06 9.2E-11 83.7 21.0 149 289-455 197-362 (365)
86 cd03804 GT1_wbaZ_like This fam 98.6 2.2E-06 4.7E-11 85.3 17.4 133 291-437 196-339 (351)
87 PRK09922 UDP-D-galactose:(gluc 98.6 3.8E-06 8.2E-11 83.9 19.2 125 290-427 180-326 (359)
88 PRK15427 colanic acid biosynth 98.5 1.6E-05 3.5E-10 80.5 21.9 143 289-446 221-392 (406)
89 TIGR02470 sucr_synth sucrose s 98.5 0.00027 5.8E-09 75.7 30.4 136 289-437 549-725 (784)
90 TIGR03087 stp1 sugar transfera 98.5 2.8E-05 6E-10 78.8 21.8 109 339-458 279-394 (397)
91 COG1519 KdtA 3-deoxy-D-manno-o 98.5 5.8E-05 1.3E-09 73.5 22.5 316 32-454 53-415 (419)
92 PRK15484 lipopolysaccharide 1, 98.4 0.00035 7.5E-09 70.3 27.5 112 339-459 256-376 (380)
93 PLN02275 transferase, transfer 98.4 3.6E-05 7.8E-10 77.2 19.3 75 340-424 286-371 (371)
94 cd03806 GT1_ALG11_like This fa 98.4 8.2E-05 1.8E-09 75.8 21.9 84 339-431 304-399 (419)
95 PRK00654 glgA glycogen synthas 98.3 5.7E-05 1.2E-09 78.1 20.9 125 289-424 281-426 (466)
96 PRK10125 putative glycosyl tra 98.3 0.00073 1.6E-08 68.4 27.8 102 308-421 256-366 (405)
97 PLN02846 digalactosyldiacylgly 98.3 3.1E-05 6.8E-10 78.4 17.5 117 292-426 230-364 (462)
98 KOG3349|consensus 98.3 4.2E-06 9.2E-11 68.5 8.4 118 289-409 3-135 (170)
99 PF02350 Epimerase_2: UDP-N-ac 98.3 3.7E-06 8E-11 82.8 9.9 179 260-454 145-345 (346)
100 cd03791 GT1_Glycogen_synthase_ 98.3 0.00018 3.8E-09 74.8 22.6 153 288-450 294-467 (476)
101 PLN02949 transferase, transfer 98.3 0.00096 2.1E-08 68.5 27.2 88 339-436 334-434 (463)
102 PLN00142 sucrose synthase 98.3 0.001 2.2E-08 71.5 28.0 138 289-438 572-749 (815)
103 TIGR02095 glgA glycogen/starch 98.2 0.00018 4E-09 74.6 21.7 122 289-424 290-435 (473)
104 PRK15179 Vi polysaccharide bio 98.2 0.00079 1.7E-08 72.0 25.4 135 289-436 516-674 (694)
105 PF00534 Glycos_transf_1: Glyc 98.2 1.7E-05 3.7E-10 70.0 11.0 135 288-437 13-170 (172)
106 TIGR03568 NeuC_NnaA UDP-N-acet 98.2 0.00031 6.8E-09 69.9 20.9 131 289-432 201-345 (365)
107 PRK14089 ipid-A-disaccharide s 98.1 1.5E-05 3.3E-10 77.9 10.6 157 289-456 167-346 (347)
108 PRK01021 lpxB lipid-A-disaccha 98.1 0.00077 1.7E-08 69.6 23.0 193 242-441 363-591 (608)
109 PF02684 LpxB: Lipid-A-disacch 98.1 0.00077 1.7E-08 66.5 21.3 189 241-438 134-353 (373)
110 PLN02501 digalactosyldiacylgly 98.1 0.00011 2.3E-09 76.6 15.3 111 306-429 557-685 (794)
111 cd04946 GT1_AmsK_like This fam 98.0 6.5E-05 1.4E-09 76.3 12.9 142 288-440 228-392 (407)
112 cd03813 GT1_like_3 This family 97.8 0.0015 3.4E-08 67.7 18.8 136 288-438 291-455 (475)
113 PF13844 Glyco_transf_41: Glyc 97.8 0.00034 7.5E-09 70.3 12.5 165 288-459 283-465 (468)
114 COG0381 WecB UDP-N-acetylgluco 97.7 0.0036 7.8E-08 60.8 18.7 164 284-459 199-373 (383)
115 COG5017 Uncharacterized conser 97.7 0.00081 1.8E-08 54.4 11.5 109 292-407 2-122 (161)
116 PLN02316 synthase/transferase 97.7 0.032 7E-07 61.9 27.8 140 290-439 840-1013(1036)
117 cd01635 Glycosyltransferase_GT 97.7 0.0016 3.5E-08 59.6 15.5 48 339-388 160-215 (229)
118 cd04949 GT1_gtfA_like This fam 97.6 0.00044 9.6E-09 69.3 10.7 135 289-437 203-357 (372)
119 COG0763 LpxB Lipid A disacchar 97.5 0.0058 1.3E-07 59.2 15.7 185 261-457 157-378 (381)
120 PLN02939 transferase, transfer 97.3 0.076 1.7E-06 58.1 23.7 135 290-434 779-944 (977)
121 PHA01633 putative glycosyl tra 97.2 0.0022 4.8E-08 62.5 9.9 127 288-424 146-305 (335)
122 PRK09814 beta-1,6-galactofuran 97.1 0.0071 1.5E-07 59.6 12.6 96 339-442 206-319 (333)
123 TIGR02918 accessory Sec system 97.0 0.018 3.9E-07 59.8 15.3 154 289-456 318-496 (500)
124 cd04950 GT1_like_1 Glycosyltra 97.0 0.022 4.7E-07 57.2 15.0 120 289-424 204-338 (373)
125 PHA01630 putative group 1 glyc 96.7 0.016 3.5E-07 56.9 11.5 106 347-459 197-329 (331)
126 COG1817 Uncharacterized protei 96.7 0.34 7.4E-06 45.7 19.1 153 289-460 182-342 (346)
127 PF13477 Glyco_trans_4_2: Glyc 96.5 0.025 5.4E-07 47.6 10.1 102 28-162 1-107 (139)
128 PRK15490 Vi polysaccharide bio 96.5 0.071 1.5E-06 55.1 14.3 120 290-420 398-532 (578)
129 PF13692 Glyco_trans_1_4: Glyc 96.2 0.0062 1.3E-07 51.0 4.3 76 339-424 52-133 (135)
130 PF13579 Glyco_trans_4_4: Glyc 95.8 0.045 9.8E-07 46.8 7.9 95 41-162 4-104 (160)
131 PF13524 Glyco_trans_1_2: Glyc 95.7 0.074 1.6E-06 41.1 8.2 81 365-454 9-91 (92)
132 PRK14098 glycogen synthase; Pr 95.7 0.064 1.4E-06 55.7 9.9 124 289-424 306-449 (489)
133 COG3914 Spy Predicted O-linked 95.4 0.54 1.2E-05 48.1 14.5 126 288-421 428-573 (620)
134 KOG4626|consensus 95.3 0.13 2.8E-06 52.7 10.0 139 288-434 757-913 (966)
135 PF06722 DUF1205: Protein of u 94.3 0.081 1.8E-06 41.3 4.6 60 282-343 32-97 (97)
136 TIGR03713 acc_sec_asp1 accesso 94.3 0.18 3.9E-06 52.6 8.5 84 340-436 409-499 (519)
137 cd03789 GT1_LPS_heptosyltransf 94.3 0.72 1.5E-05 44.1 12.2 39 28-67 1-41 (279)
138 PF06258 Mito_fiss_Elm1: Mitoc 94.2 1.5 3.3E-05 42.4 14.2 162 239-407 96-281 (311)
139 PRK10017 colanic acid biosynth 93.9 1.7 3.6E-05 44.2 14.3 95 352-455 323-420 (426)
140 PF06925 MGDG_synth: Monogalac 93.2 0.093 2E-06 46.0 3.6 42 121-163 79-125 (169)
141 PRK14099 glycogen synthase; Pr 92.8 0.98 2.1E-05 46.9 11.0 138 290-436 295-458 (485)
142 PF13439 Glyco_transf_4: Glyco 92.7 0.52 1.1E-05 40.9 7.7 33 37-69 11-43 (177)
143 COG0438 RfaG Glycosyltransfera 90.8 5.6 0.00012 38.2 13.6 88 339-434 256-351 (381)
144 TIGR02919 accessory Sec system 89.4 3.4 7.3E-05 42.2 10.7 122 307-439 291-426 (438)
145 cd03788 GT1_TPS Trehalose-6-Ph 88.6 14 0.00031 38.1 15.0 89 343-440 344-444 (460)
146 COG0003 ArsA Predicted ATPase 88.6 3.3 7.1E-05 40.2 9.5 42 27-68 2-43 (322)
147 PF02374 ArsA_ATPase: Anion-tr 88.3 1.4 3.1E-05 42.6 6.8 40 28-67 2-41 (305)
148 PF04464 Glyphos_transf: CDP-G 87.7 3.3 7.2E-05 41.3 9.5 136 310-455 219-368 (369)
149 PF12000 Glyco_trans_4_3: Gkyc 87.2 4.2 9.1E-05 35.5 8.4 94 53-161 1-95 (171)
150 cd00550 ArsA_ATPase Oxyanion-t 86.1 5.2 0.00011 37.6 9.2 39 28-66 1-39 (254)
151 TIGR02400 trehalose_OtsA alpha 85.8 7.2 0.00016 40.2 10.8 100 344-458 340-451 (456)
152 PF08660 Alg14: Oligosaccharid 85.5 4.2 9.1E-05 35.5 7.6 35 130-164 90-131 (170)
153 PF05159 Capsule_synth: Capsul 84.9 2.4 5.1E-05 40.3 6.3 74 308-385 141-225 (269)
154 COG3660 Predicted nucleoside-d 84.3 11 0.00023 35.0 9.7 37 346-384 234-271 (329)
155 COG4370 Uncharacterized protei 83.8 7.3 0.00016 36.8 8.6 93 345-439 282-393 (412)
156 TIGR02193 heptsyl_trn_I lipopo 82.9 7 0.00015 38.0 9.0 128 288-424 178-319 (319)
157 PF11044 TMEMspv1-c74-12: Plec 82.1 2.7 5.8E-05 26.7 3.5 27 487-513 15-41 (49)
158 KOG0853|consensus 82.0 1.1 2.4E-05 45.7 2.8 64 369-436 380-444 (495)
159 PF07429 Glyco_transf_56: 4-al 79.5 32 0.0007 33.5 11.5 80 339-424 244-331 (360)
160 PRK14501 putative bifunctional 78.9 26 0.00056 38.6 12.5 96 342-442 344-447 (726)
161 TIGR00715 precor6x_red precorr 78.1 5.4 0.00012 37.4 5.9 81 44-162 12-100 (256)
162 cd03793 GT1_Glycogen_synthase_ 77.4 17 0.00038 38.1 9.8 71 350-424 468-550 (590)
163 PRK04885 ppnK inorganic polyph 76.9 2.3 5E-05 40.1 3.1 51 358-424 35-91 (265)
164 KOG1111|consensus 73.5 97 0.0021 30.5 16.3 76 307-385 211-302 (426)
165 PRK02155 ppnK NAD(+)/NADH kina 71.1 4 8.7E-05 39.2 3.2 94 307-424 20-117 (291)
166 TIGR03499 FlhF flagellar biosy 71.0 15 0.00033 35.1 7.2 41 26-66 193-235 (282)
167 PRK02649 ppnK inorganic polyph 70.1 3.8 8.2E-05 39.5 2.9 52 357-424 67-122 (305)
168 COG2910 Putative NADH-flavin r 69.4 7.8 0.00017 34.0 4.3 38 27-69 1-38 (211)
169 PRK01231 ppnK inorganic polyph 68.2 18 0.00039 34.8 7.0 52 357-424 61-116 (295)
170 PF04127 DFP: DNA / pantothena 68.1 11 0.00024 33.4 5.2 36 43-79 31-66 (185)
171 cd02067 B12-binding B12 bindin 68.0 5.9 0.00013 32.1 3.3 35 28-63 1-35 (119)
172 PF00731 AIRC: AIR carboxylase 67.9 74 0.0016 27.1 9.8 137 290-441 1-148 (150)
173 PRK01911 ppnK inorganic polyph 67.8 4.9 0.00011 38.5 3.1 52 357-424 63-118 (292)
174 PF01075 Glyco_transf_9: Glyco 67.1 9.4 0.0002 35.5 4.9 93 288-384 104-208 (247)
175 PRK10422 lipopolysaccharide co 66.0 45 0.00097 32.9 9.7 94 288-384 182-287 (352)
176 PRK14075 pnk inorganic polypho 65.2 24 0.00052 33.1 7.1 81 306-424 11-92 (256)
177 COG1703 ArgK Putative periplas 64.6 24 0.00052 33.6 6.7 45 23-67 47-91 (323)
178 PRK14077 pnk inorganic polypho 63.4 9.2 0.0002 36.6 4.0 52 357-424 63-118 (287)
179 TIGR00725 conserved hypothetic 63.1 99 0.0021 26.6 11.0 99 277-386 20-123 (159)
180 PRK03372 ppnK inorganic polyph 62.5 7.7 0.00017 37.4 3.3 52 357-424 71-126 (306)
181 TIGR02398 gluc_glyc_Psyn gluco 61.5 2.1E+02 0.0045 29.8 14.0 154 288-459 283-478 (487)
182 PRK02797 4-alpha-L-fucosyltran 61.2 1.2E+02 0.0027 29.2 10.9 80 339-424 205-292 (322)
183 PF08323 Glyco_transf_5: Starc 61.1 13 0.00029 34.6 4.6 28 38-65 16-43 (245)
184 PRK08305 spoVFB dipicolinate s 61.0 8.9 0.00019 34.2 3.2 40 25-66 4-44 (196)
185 cd02035 ArsA ArsA ATPase funct 60.5 43 0.00094 30.4 7.8 38 30-67 2-39 (217)
186 PLN02929 NADH kinase 59.8 45 0.00097 32.1 7.9 96 305-424 31-135 (301)
187 PRK04539 ppnK inorganic polyph 58.8 12 0.00027 35.9 4.0 52 357-424 67-122 (296)
188 PF12038 DUF3524: Domain of un 58.2 21 0.00045 30.8 4.7 36 27-65 1-36 (168)
189 PLN02935 Bifunctional NADH kin 58.1 11 0.00023 38.8 3.5 52 357-424 261-316 (508)
190 PRK10964 ADP-heptose:LPS hepto 57.5 41 0.0009 32.7 7.6 127 289-424 178-320 (322)
191 TIGR02201 heptsyl_trn_III lipo 57.3 73 0.0016 31.3 9.5 94 288-384 180-285 (344)
192 PRK03378 ppnK inorganic polyph 56.9 14 0.0003 35.5 4.0 52 357-424 62-117 (292)
193 TIGR00379 cobB cobyrinic acid 56.8 60 0.0013 33.4 8.9 35 29-63 2-36 (449)
194 PRK03501 ppnK inorganic polyph 56.7 14 0.0003 34.8 3.9 52 358-424 39-95 (264)
195 PF01975 SurE: Survival protei 56.5 19 0.00041 32.3 4.5 38 28-67 2-39 (196)
196 PLN03063 alpha,alpha-trehalose 55.9 46 0.001 37.0 8.3 80 352-442 371-462 (797)
197 PRK02231 ppnK inorganic polyph 54.9 11 0.00024 35.7 2.9 57 357-429 41-102 (272)
198 TIGR02195 heptsyl_trn_II lipop 54.7 44 0.00096 32.6 7.4 93 288-384 173-276 (334)
199 PF01102 Glycophorin_A: Glycop 54.4 16 0.00034 29.8 3.3 18 490-507 77-94 (122)
200 PF08357 SEFIR: SEFIR domain; 54.0 17 0.00036 30.9 3.7 33 28-60 2-35 (150)
201 PRK05703 flhF flagellar biosyn 53.5 36 0.00078 34.7 6.5 40 27-66 221-262 (424)
202 cd06318 PBP1_ABC_sugar_binding 53.5 47 0.001 31.2 7.2 35 28-62 1-36 (282)
203 PRK01185 ppnK inorganic polyph 53.3 18 0.0004 34.2 4.1 51 358-424 52-103 (271)
204 PF15102 TMEM154: TMEM154 prot 53.2 8.2 0.00018 32.3 1.5 14 499-512 76-89 (146)
205 COG4635 HemG Flavodoxin [Energ 52.8 23 0.00049 30.2 4.1 52 28-79 2-53 (175)
206 PF02310 B12-binding: B12 bind 52.1 18 0.0004 29.1 3.6 35 28-63 2-36 (121)
207 PRK05920 aromatic acid decarbo 51.5 16 0.00035 32.9 3.2 40 25-66 2-41 (204)
208 PF12146 Hydrolase_4: Putative 51.1 32 0.00069 25.6 4.3 35 27-62 16-50 (79)
209 TIGR01470 cysG_Nterm siroheme 50.8 1.5E+02 0.0033 26.7 9.5 153 288-453 9-176 (205)
210 PRK14076 pnk inorganic polypho 50.6 13 0.00028 39.6 2.9 51 358-424 348-402 (569)
211 PF04244 DPRP: Deoxyribodipyri 50.2 18 0.00039 33.2 3.4 26 40-65 47-72 (224)
212 COG1484 DnaC DNA replication p 49.5 26 0.00056 32.9 4.5 40 25-65 104-143 (254)
213 smart00096 UTG Uteroglobin. 49.4 83 0.0018 22.8 5.9 49 412-460 17-66 (69)
214 PRK03708 ppnK inorganic polyph 49.3 20 0.00042 34.2 3.7 93 306-424 14-110 (277)
215 PF02951 GSH-S_N: Prokaryotic 48.8 17 0.00036 29.6 2.6 26 41-66 17-42 (119)
216 PF06363 Picorna_P3A: Picornav 48.7 1.1E+02 0.0024 23.2 6.6 15 410-424 11-25 (100)
217 COG0859 RfaF ADP-heptose:LPS h 48.5 85 0.0019 30.8 8.2 92 289-384 175-276 (334)
218 PF02441 Flavoprotein: Flavopr 48.4 19 0.00041 29.7 3.0 38 27-66 1-38 (129)
219 PRK02261 methylaspartate mutas 48.3 27 0.00059 29.2 4.0 40 25-65 2-41 (137)
220 PF02038 ATP1G1_PLM_MAT8: ATP1 47.9 24 0.00052 23.5 2.7 37 475-511 8-45 (50)
221 PRK11889 flhF flagellar biosyn 46.6 49 0.0011 33.3 5.9 40 28-67 242-281 (436)
222 PRK00207 sulfur transfer compl 46.1 44 0.00096 27.6 4.8 36 28-63 2-40 (128)
223 PRK15408 autoinducer 2-binding 45.6 1.6E+02 0.0036 28.8 9.7 34 130-163 78-114 (336)
224 KOG2825|consensus 45.4 1.2E+02 0.0026 28.3 7.7 46 23-68 15-60 (323)
225 PRK10916 ADP-heptose:LPS hepto 45.0 76 0.0016 31.3 7.3 93 288-384 179-286 (348)
226 PRK10916 ADP-heptose:LPS hepto 44.3 66 0.0014 31.7 6.8 40 27-67 1-42 (348)
227 PRK13982 bifunctional SbtC-lik 44.3 34 0.00074 35.2 4.7 54 24-79 254-319 (475)
228 COG2120 Uncharacterized protei 43.9 34 0.00073 31.7 4.3 41 23-64 7-47 (237)
229 PRK01077 cobyrinic acid a,c-di 43.7 66 0.0014 33.1 6.8 36 28-63 5-40 (451)
230 COG0801 FolK 7,8-dihydro-6-hyd 43.0 46 0.001 28.6 4.6 37 290-329 2-38 (160)
231 COG1087 GalE UDP-glucose 4-epi 42.9 3.2E+02 0.0069 26.4 11.5 31 28-65 2-34 (329)
232 cd01974 Nitrogenase_MoFe_beta 41.8 1.4E+02 0.003 30.6 8.7 36 122-162 368-403 (435)
233 PRK09620 hypothetical protein; 41.4 47 0.001 30.6 4.8 22 43-64 31-52 (229)
234 TIGR03475 tap_IncFII_lead RepA 41.0 22 0.00047 19.6 1.4 17 6-22 3-19 (26)
235 PF11395 DUF2873: Protein of u 40.9 85 0.0019 19.2 4.3 13 472-484 3-15 (43)
236 PRK12342 hypothetical protein; 40.5 29 0.00062 32.5 3.2 38 124-162 102-144 (254)
237 PRK14099 glycogen synthase; Pr 40.0 46 0.001 34.6 5.0 40 25-64 2-46 (485)
238 PRK08939 primosomal protein Dn 40.0 52 0.0011 31.9 5.0 37 27-64 157-193 (306)
239 TIGR02195 heptsyl_trn_II lipop 39.6 57 0.0012 31.9 5.4 38 28-66 1-40 (334)
240 PF08048 RepA1_leader: Tap Rep 39.0 28 0.0006 19.0 1.6 17 6-22 3-19 (25)
241 cd02070 corrinoid_protein_B12- 38.9 39 0.00084 30.4 3.8 39 25-64 81-119 (201)
242 TIGR00345 arsA arsenite-activa 38.9 79 0.0017 30.2 6.1 23 45-67 3-25 (284)
243 PRK13185 chlL protochlorophyll 38.8 56 0.0012 30.8 5.1 40 27-66 2-41 (270)
244 TIGR03012 sulf_tusD_dsrE sulfu 38.0 63 0.0014 26.6 4.6 35 29-63 2-39 (127)
245 COG4088 Predicted nucleotide k 37.8 37 0.0008 30.6 3.2 35 30-64 4-38 (261)
246 PRK02122 glucosamine-6-phospha 37.7 47 0.001 35.9 4.7 37 27-64 370-406 (652)
247 PF05728 UPF0227: Uncharacteri 37.7 1.7E+02 0.0036 26.0 7.5 37 28-64 1-37 (187)
248 PHA02754 hypothetical protein; 37.2 51 0.0011 22.5 3.1 24 419-442 6-30 (67)
249 COG0391 Uncharacterized conser 37.2 3.9E+02 0.0085 26.0 10.3 138 259-423 166-304 (323)
250 PRK10653 D-ribose transporter 36.8 2.2E+02 0.0048 26.9 9.1 37 26-62 26-63 (295)
251 PF05393 Hum_adeno_E3A: Human 36.7 28 0.00061 26.1 2.0 24 480-503 32-56 (94)
252 TIGR02113 coaC_strep phosphopa 36.4 37 0.00079 29.9 3.1 37 28-66 2-38 (177)
253 KOG2754|consensus 36.3 78 0.0017 31.0 5.3 53 10-66 5-61 (443)
254 PLN02727 NAD kinase 35.7 50 0.0011 36.7 4.5 52 357-424 742-797 (986)
255 cd02034 CooC The accessory pro 35.6 85 0.0018 25.3 4.9 37 28-65 1-37 (116)
256 TIGR02852 spore_dpaB dipicolin 35.6 38 0.00083 30.0 3.1 37 28-66 2-39 (187)
257 TIGR02370 pyl_corrinoid methyl 35.5 48 0.001 29.7 3.8 39 26-65 84-122 (197)
258 cd01452 VWA_26S_proteasome_sub 35.4 1.3E+02 0.0029 26.6 6.5 40 26-65 107-146 (187)
259 CHL00076 chlB photochlorophyll 35.4 73 0.0016 33.4 5.6 36 122-162 365-400 (513)
260 PF03308 ArgK: ArgK protein; 35.0 1.2E+02 0.0027 28.4 6.3 43 24-66 26-68 (266)
261 cd06277 PBP1_LacI_like_1 Ligan 34.9 1.9E+02 0.0042 26.7 8.2 33 130-162 56-88 (268)
262 cd03146 GAT1_Peptidase_E Type 34.9 3E+02 0.0066 24.8 9.0 87 276-385 16-121 (212)
263 PRK06719 precorrin-2 dehydroge 34.7 66 0.0014 27.6 4.4 36 23-64 10-45 (157)
264 PF15086 UPF0542: Uncharacteri 34.2 82 0.0018 22.8 3.9 43 448-501 6-48 (74)
265 PF00448 SRP54: SRP54-type pro 34.1 94 0.002 27.8 5.4 40 28-67 2-41 (196)
266 PRK04761 ppnK inorganic polyph 34.0 33 0.00072 31.9 2.6 29 358-386 25-57 (246)
267 PRK10355 xylF D-xylose transpo 33.9 2.2E+02 0.0048 27.7 8.6 41 23-63 22-63 (330)
268 cd03466 Nitrogenase_NifN_2 Nit 33.9 2.2E+02 0.0047 29.1 8.7 36 121-161 362-397 (429)
269 PRK02645 ppnK inorganic polyph 33.9 1.4E+02 0.003 28.9 6.9 68 307-386 18-89 (305)
270 PRK09004 FMN-binding protein M 33.6 66 0.0014 27.2 4.2 36 28-63 3-38 (146)
271 TIGR01278 DPOR_BchB light-inde 33.6 94 0.002 32.6 6.1 36 122-162 355-390 (511)
272 PRK09701 D-allose transporter 33.2 3.8E+02 0.0083 25.6 10.1 40 23-62 21-61 (311)
273 cd01141 TroA_d Periplasmic bin 33.1 53 0.0011 28.8 3.7 41 120-162 59-100 (186)
274 PRK00005 fmt methionyl-tRNA fo 33.0 96 0.0021 30.0 5.7 23 43-65 11-33 (309)
275 cd07035 TPP_PYR_POX_like Pyrim 32.9 1.5E+02 0.0034 24.9 6.5 28 358-385 59-92 (155)
276 cd02071 MM_CoA_mut_B12_BD meth 32.8 55 0.0012 26.6 3.5 36 28-64 1-36 (122)
277 COG2159 Predicted metal-depend 32.5 2E+02 0.0044 27.6 7.8 93 278-374 116-210 (293)
278 cd06306 PBP1_TorT-like TorT-li 32.4 2E+02 0.0044 26.7 7.9 36 28-63 1-37 (268)
279 PRK03359 putative electron tra 32.1 45 0.00098 31.3 3.1 39 124-163 105-148 (256)
280 PF13614 AAA_31: AAA domain; P 32.0 95 0.0021 26.1 5.0 36 30-65 4-39 (157)
281 COG3563 KpsC Capsule polysacch 32.0 4.6E+02 0.0099 27.1 9.9 155 306-482 165-336 (671)
282 COG4126 Hydantoin racemase [Am 31.9 2.3E+02 0.005 25.8 7.2 37 28-64 2-38 (230)
283 PRK12724 flagellar biosynthesi 31.8 1.2E+02 0.0027 30.7 6.2 41 27-67 223-264 (432)
284 TIGR02015 BchY chlorophyllide 31.6 1.7E+02 0.0037 29.8 7.4 32 125-161 349-380 (422)
285 PF05693 Glycogen_syn: Glycoge 31.4 57 0.0012 34.5 3.9 69 370-439 485-566 (633)
286 PRK10422 lipopolysaccharide co 31.3 96 0.0021 30.6 5.6 41 26-67 5-47 (352)
287 PF05568 ASFV_J13L: African sw 31.3 84 0.0018 26.0 4.1 11 474-484 25-35 (189)
288 TIGR00460 fmt methionyl-tRNA f 31.2 96 0.0021 30.1 5.4 32 28-65 2-33 (313)
289 TIGR02201 heptsyl_trn_III lipo 31.1 2E+02 0.0043 28.2 7.8 39 28-67 1-41 (344)
290 COG1763 MobB Molybdopterin-gua 30.9 87 0.0019 27.0 4.4 38 27-64 2-39 (161)
291 PRK12723 flagellar biosynthesi 30.8 98 0.0021 31.1 5.4 41 27-67 174-218 (388)
292 cd02033 BchX Chlorophyllide re 30.6 1.2E+02 0.0027 29.6 6.0 42 25-66 29-70 (329)
293 cd01965 Nitrogenase_MoFe_beta_ 30.6 66 0.0014 32.9 4.3 36 122-162 362-397 (428)
294 PRK12446 undecaprenyldiphospho 30.6 2.7E+02 0.0059 27.5 8.6 31 354-384 87-120 (352)
295 COG2210 Peroxiredoxin family p 30.6 1E+02 0.0023 25.6 4.5 38 28-65 4-41 (137)
296 COG2861 Uncharacterized protei 30.5 1.1E+02 0.0024 28.1 5.2 36 122-160 142-179 (250)
297 PRK14098 glycogen synthase; Pr 30.4 67 0.0015 33.5 4.4 27 38-64 22-48 (489)
298 PRK03094 hypothetical protein; 30.3 43 0.00094 24.9 2.1 20 44-63 10-29 (80)
299 KOG0780|consensus 30.3 1E+02 0.0022 30.7 5.1 42 27-68 101-142 (483)
300 PRK06718 precorrin-2 dehydroge 29.8 4E+02 0.0087 23.9 8.8 155 288-460 10-182 (202)
301 TIGR00064 ftsY signal recognit 29.8 1.2E+02 0.0026 28.8 5.7 41 26-66 71-111 (272)
302 PRK00561 ppnK inorganic polyph 29.5 75 0.0016 29.9 4.1 30 357-386 32-65 (259)
303 PF07355 GRDB: Glycine/sarcosi 29.4 61 0.0013 31.6 3.5 40 121-161 70-118 (349)
304 COG1553 DsrE Uncharacterized c 29.3 1.3E+02 0.0028 24.6 4.8 36 28-63 2-40 (126)
305 PF09314 DUF1972: Domain of un 29.2 1.7E+02 0.0036 26.0 6.0 44 39-82 18-64 (185)
306 PRK12727 flagellar biosynthesi 29.2 1.4E+02 0.003 31.4 6.2 42 25-66 348-391 (559)
307 cd07039 TPP_PYR_POX Pyrimidine 29.1 2.1E+02 0.0044 24.7 6.6 29 357-385 62-96 (164)
308 PF11628 TCR_zetazeta: T-cell 29.1 1.1E+02 0.0025 18.3 3.2 18 479-496 6-23 (33)
309 cd02037 MRP-like MRP (Multiple 29.0 1.1E+02 0.0023 26.4 4.9 38 29-66 2-39 (169)
310 PF01656 CbiA: CobQ/CobB/MinD/ 28.9 1.4E+02 0.003 26.1 5.8 38 29-66 1-38 (195)
311 COG2984 ABC-type uncharacteriz 28.8 5.5E+02 0.012 24.9 9.7 37 125-163 82-118 (322)
312 cd06299 PBP1_LacI_like_13 Liga 28.5 3E+02 0.0066 25.2 8.3 34 130-163 53-87 (265)
313 COG2327 WcaK Polysaccharide py 28.5 3.2E+02 0.0068 27.4 8.3 86 339-431 265-357 (385)
314 cd06270 PBP1_GalS_like Ligand 28.4 3.1E+02 0.0067 25.3 8.4 34 130-163 53-87 (268)
315 COG0467 RAD55 RecA-superfamily 28.4 1.3E+02 0.0027 28.2 5.6 42 25-66 21-62 (260)
316 PRK07313 phosphopantothenoylcy 28.4 58 0.0012 28.8 3.0 38 27-66 2-39 (182)
317 PF06506 PrpR_N: Propionate ca 28.2 16 0.00035 32.0 -0.5 33 355-388 31-63 (176)
318 COG0223 Fmt Methionyl-tRNA for 28.0 92 0.002 30.1 4.5 35 27-67 2-36 (307)
319 PF13450 NAD_binding_8: NAD(P) 27.9 66 0.0014 23.0 2.8 22 44-65 8-29 (68)
320 cd06316 PBP1_ABC_sugar_binding 27.9 2.5E+02 0.0055 26.4 7.8 35 28-62 1-36 (294)
321 PRK09739 hypothetical protein; 27.7 1.2E+02 0.0025 27.1 5.0 39 26-64 3-43 (199)
322 TIGR03446 mycothiol_Mca mycoth 27.5 1E+02 0.0022 29.4 4.8 37 27-64 1-37 (283)
323 cd06305 PBP1_methylthioribose_ 27.5 2.7E+02 0.0058 25.7 7.8 35 28-62 1-36 (273)
324 cd02069 methionine_synthase_B1 27.4 80 0.0017 28.7 3.8 39 25-64 87-125 (213)
325 COG1618 Predicted nucleotide k 27.4 2.2E+02 0.0047 24.7 6.0 55 25-80 4-59 (179)
326 TIGR01007 eps_fam capsular exo 27.4 1.2E+02 0.0026 27.0 5.1 41 25-65 15-56 (204)
327 PF03698 UPF0180: Uncharacteri 27.2 51 0.0011 24.6 2.0 22 44-65 10-31 (80)
328 PF05568 ASFV_J13L: African sw 27.2 90 0.002 25.9 3.6 12 478-489 26-37 (189)
329 PF00957 Synaptobrevin: Synapt 27.1 2.8E+02 0.006 20.9 7.4 19 474-492 61-79 (89)
330 KOG3488|consensus 27.0 94 0.002 22.2 3.2 11 472-482 35-45 (81)
331 TIGR01205 D_ala_D_alaTIGR D-al 26.9 1.1E+02 0.0024 29.5 5.0 38 28-65 1-41 (315)
332 PLN00016 RNA-binding protein; 26.9 61 0.0013 32.4 3.3 40 25-65 51-90 (378)
333 cd02040 NifH NifH gene encodes 26.9 1.1E+02 0.0023 28.7 4.9 39 28-66 2-40 (270)
334 PRK13236 nitrogenase reductase 26.9 1.1E+02 0.0025 29.3 5.1 40 27-66 6-45 (296)
335 PF12575 DUF3753: Protein of u 26.6 2.6E+02 0.0056 20.4 6.0 31 446-476 19-49 (72)
336 PRK08105 flavodoxin; Provision 26.4 1E+02 0.0022 26.1 4.1 38 28-65 3-40 (149)
337 PRK14745 RepA leader peptide T 26.3 43 0.00094 18.3 1.1 17 6-22 3-19 (26)
338 PF08390 TRAM1: TRAM1-like pro 26.2 1.2E+02 0.0026 21.6 3.7 37 475-511 21-64 (65)
339 PF07015 VirC1: VirC1 protein; 26.2 1.6E+02 0.0034 27.2 5.4 40 29-68 4-43 (231)
340 COG4098 comFA Superfamily II D 26.2 4.7E+02 0.01 25.8 8.6 60 259-326 272-335 (441)
341 KOG1467|consensus 26.1 1.1E+02 0.0024 31.2 4.7 14 148-161 455-468 (556)
342 PRK09271 flavodoxin; Provision 26.1 1.2E+02 0.0025 26.1 4.5 35 28-63 2-37 (160)
343 COG4394 Uncharacterized protei 26.0 5.9E+02 0.013 24.4 10.7 89 276-384 191-282 (370)
344 cd03789 GT1_LPS_heptosyltransf 25.7 1.5E+02 0.0032 28.0 5.6 35 122-162 191-225 (279)
345 PF01695 IstB_IS21: IstB-like 25.6 1.3E+02 0.0028 26.4 4.7 40 24-64 45-84 (178)
346 cd06312 PBP1_ABC_sugar_binding 25.5 2.8E+02 0.0062 25.6 7.6 36 28-63 1-38 (271)
347 PLN02948 phosphoribosylaminoim 25.5 8.5E+02 0.018 26.0 11.7 139 289-442 410-559 (577)
348 PRK06851 hypothetical protein; 25.4 1.9E+02 0.0041 28.8 6.3 43 24-66 27-69 (367)
349 PF01210 NAD_Gly3P_dh_N: NAD-d 25.3 48 0.001 28.4 1.9 23 43-65 10-32 (157)
350 PRK14494 putative molybdopteri 25.3 1.4E+02 0.003 27.5 5.0 36 28-63 2-37 (229)
351 TIGR03010 sulf_tusC_dsrF sulfu 25.3 1.2E+02 0.0027 24.3 4.2 38 28-65 1-40 (116)
352 COG1938 Archaeal enzymes of AT 25.2 5.6E+02 0.012 23.8 8.9 30 362-391 153-184 (244)
353 PF13604 AAA_30: AAA domain; P 25.2 1.3E+02 0.0028 26.8 4.8 41 24-64 15-55 (196)
354 PRK06756 flavodoxin; Provision 25.2 1.2E+02 0.0026 25.4 4.4 36 27-63 2-38 (148)
355 PRK13789 phosphoribosylamine-- 25.1 1.4E+02 0.0031 30.4 5.6 34 26-65 4-37 (426)
356 TIGR02700 flavo_MJ0208 archaeo 25.0 75 0.0016 29.4 3.3 31 36-66 7-40 (234)
357 TIGR00176 mobB molybdopterin-g 24.9 1.3E+02 0.0028 25.6 4.6 35 30-64 2-36 (155)
358 PRK06732 phosphopantothenate-- 24.9 67 0.0015 29.6 2.9 22 42-63 27-48 (229)
359 PRK05632 phosphate acetyltrans 24.8 4.8E+02 0.01 28.6 9.8 36 28-63 4-39 (684)
360 PF05225 HTH_psq: helix-turn-h 24.7 83 0.0018 20.4 2.5 24 412-435 1-26 (45)
361 cd01983 Fer4_NifH The Fer4_Nif 24.5 1.5E+02 0.0033 21.9 4.6 31 32-62 4-34 (99)
362 COG0297 GlgA Glycogen synthase 24.4 8.2E+02 0.018 25.5 11.8 128 289-424 293-440 (487)
363 PF01102 Glycophorin_A: Glycop 24.3 76 0.0016 25.9 2.7 6 480-485 70-75 (122)
364 COG0041 PurE Phosphoribosylcar 24.2 4.5E+02 0.0098 22.4 9.9 137 291-442 4-151 (162)
365 PRK08057 cobalt-precorrin-6x r 24.1 3.7E+02 0.008 25.1 7.7 40 121-162 55-100 (248)
366 PRK05579 bifunctional phosphop 24.1 2.9E+02 0.0062 28.0 7.4 66 12-79 173-251 (399)
367 PF00070 Pyr_redox: Pyridine n 23.9 86 0.0019 23.0 2.9 24 42-65 9-32 (80)
368 cd06323 PBP1_ribose_binding Pe 23.9 2.4E+02 0.0053 25.8 6.7 35 29-63 2-37 (268)
369 COG0118 HisH Glutamine amidotr 23.9 99 0.0022 27.7 3.6 97 291-405 4-103 (204)
370 cd02036 MinD Bacterial cell di 23.8 1.5E+02 0.0033 25.4 5.0 37 29-65 2-38 (179)
371 cd01575 PBP1_GntR Ligand-bindi 23.8 3.9E+02 0.0085 24.4 8.1 33 130-162 53-86 (268)
372 PF13460 NAD_binding_10: NADH( 23.8 95 0.0021 26.9 3.6 41 37-79 6-46 (183)
373 PRK13896 cobyrinic acid a,c-di 23.8 4.2E+02 0.0091 27.1 8.5 35 29-63 4-38 (433)
374 cd06290 PBP1_LacI_like_9 Ligan 23.7 3.9E+02 0.0084 24.5 8.1 35 29-63 2-37 (265)
375 cd02032 Bchl_like This family 23.7 1.4E+02 0.003 28.1 4.9 37 29-66 3-39 (267)
376 PF05724 TPMT: Thiopurine S-me 23.7 67 0.0015 29.3 2.7 31 23-61 35-65 (218)
377 PRK13181 hisH imidazole glycer 23.6 2.9E+02 0.0063 24.6 6.8 28 291-327 2-29 (199)
378 PRK13234 nifH nitrogenase redu 23.4 1.7E+02 0.0036 28.1 5.5 41 26-66 3-43 (295)
379 PRK06988 putative formyltransf 23.4 3E+02 0.0065 26.7 7.3 33 27-65 3-35 (312)
380 cd01540 PBP1_arabinose_binding 23.4 2.8E+02 0.0061 25.9 7.1 35 29-63 2-37 (289)
381 KOG1986|consensus 23.4 1.9E+02 0.0041 31.0 6.0 54 11-64 254-338 (745)
382 PRK05282 (alpha)-aspartyl dipe 22.9 3.2E+02 0.0069 25.3 6.9 85 278-385 22-120 (233)
383 PRK06731 flhF flagellar biosyn 22.8 2.3E+02 0.0051 26.8 6.2 39 27-66 76-114 (270)
384 PRK15395 methyl-galactoside AB 22.8 4.9E+02 0.011 25.2 8.8 33 130-162 79-114 (330)
385 PF10740 DUF2529: Protein of u 22.8 1.3E+02 0.0029 26.1 4.0 35 25-62 81-115 (172)
386 cd08181 PPD-like 1,3-propanedi 22.6 1.4E+02 0.0031 29.6 4.9 32 355-387 80-133 (357)
387 COG0859 RfaF ADP-heptose:LPS h 22.5 1.6E+02 0.0035 28.8 5.3 36 122-163 244-279 (334)
388 KOG1387|consensus 22.3 7.7E+02 0.017 24.4 16.7 98 339-440 336-444 (465)
389 TIGR00730 conserved hypothetic 22.2 5.4E+02 0.012 22.6 8.4 97 278-384 22-132 (178)
390 TIGR00640 acid_CoA_mut_C methy 22.2 1.4E+02 0.0031 24.7 4.1 39 24-63 51-90 (132)
391 TIGR01284 alt_nitrog_alph nitr 22.2 63 0.0014 33.3 2.4 34 123-161 387-420 (457)
392 cd07038 TPP_PYR_PDC_IPDC_like 22.1 2.2E+02 0.0047 24.5 5.4 28 359-386 60-93 (162)
393 PRK14722 flhF flagellar biosyn 21.9 2.9E+02 0.0062 27.7 6.8 42 25-66 135-178 (374)
394 PRK06835 DNA replication prote 21.7 1.6E+02 0.0034 28.9 4.9 39 25-64 182-220 (329)
395 COG3046 Uncharacterized protei 21.7 1E+02 0.0023 30.7 3.5 26 40-65 51-76 (505)
396 TIGR02016 BchX chlorophyllide 21.6 1.9E+02 0.0041 27.8 5.4 39 29-67 2-40 (296)
397 cd02117 NifH_like This family 21.5 1.7E+02 0.0037 26.3 4.9 37 30-66 3-39 (212)
398 cd07037 TPP_PYR_MenD Pyrimidin 21.4 87 0.0019 27.0 2.8 28 358-385 60-93 (162)
399 KOG0129|consensus 21.4 1.5E+02 0.0033 30.3 4.7 95 242-348 351-452 (520)
400 cd06315 PBP1_ABC_sugar_binding 21.4 3.5E+02 0.0075 25.3 7.3 36 28-63 2-38 (280)
401 COG1066 Sms Predicted ATP-depe 21.4 1.5E+02 0.0032 29.9 4.5 42 23-66 90-131 (456)
402 cd06280 PBP1_LacI_like_4 Ligan 21.4 4.2E+02 0.0092 24.3 7.8 35 29-63 2-37 (263)
403 TIGR01286 nifK nitrogenase mol 21.4 1E+02 0.0022 32.3 3.8 34 123-161 429-462 (515)
404 PRK06270 homoserine dehydrogen 21.3 1.3E+02 0.0029 29.5 4.4 58 350-407 81-150 (341)
405 PF14979 TMEM52: Transmembrane 21.3 1.1E+02 0.0024 25.6 3.1 28 483-510 22-50 (154)
406 PF02525 Flavodoxin_2: Flavodo 21.3 1.4E+02 0.0031 26.5 4.3 38 27-64 1-42 (199)
407 TIGR00521 coaBC_dfp phosphopan 21.2 87 0.0019 31.5 3.1 39 25-65 2-40 (390)
408 cd03109 DTBS Dethiobiotin synt 21.2 1.9E+02 0.0042 23.8 4.8 36 30-65 2-37 (134)
409 cd06282 PBP1_GntR_like_2 Ligan 21.2 4.7E+02 0.01 23.8 8.1 33 130-162 53-87 (266)
410 COG2185 Sbm Methylmalonyl-CoA 21.1 1.1E+02 0.0025 25.7 3.2 39 25-64 11-49 (143)
411 TIGR01918 various_sel_PB selen 21.0 1E+02 0.0023 31.0 3.5 40 121-161 66-114 (431)
412 PRK06029 3-octaprenyl-4-hydrox 21.0 79 0.0017 28.0 2.5 38 27-66 2-40 (185)
413 PF10577 UPF0560: Uncharacteri 21.0 1.5E+02 0.0032 32.4 4.8 14 149-162 45-58 (807)
414 TIGR01917 gly_red_sel_B glycin 21.0 1E+02 0.0023 31.0 3.4 40 121-161 66-114 (431)
415 TIGR02699 archaeo_AfpA archaeo 21.0 91 0.002 27.3 2.8 30 37-66 8-39 (174)
416 PRK12726 flagellar biosynthesi 21.0 2.2E+02 0.0047 28.7 5.6 43 25-67 204-246 (407)
417 PRK14092 2-amino-4-hydroxy-6-h 20.9 1.8E+02 0.0038 25.2 4.5 32 288-322 6-37 (163)
418 TIGR00421 ubiX_pad polyprenyl 20.9 89 0.0019 27.6 2.8 37 28-66 1-37 (181)
419 PRK01372 ddl D-alanine--D-alan 20.9 1.4E+02 0.003 28.7 4.4 38 27-64 5-45 (304)
420 PF03205 MobB: Molybdopterin g 20.9 1.8E+02 0.0039 24.3 4.5 37 29-65 2-38 (140)
421 cd03412 CbiK_N Anaerobic cobal 20.7 1.6E+02 0.0034 24.2 4.0 38 289-329 1-40 (127)
422 PF10933 DUF2827: Protein of u 20.7 4.1E+02 0.0088 26.3 7.3 96 341-452 254-359 (364)
423 KOG3339|consensus 20.6 3.1E+02 0.0068 24.2 5.8 28 25-54 37-64 (211)
424 cd06284 PBP1_LacI_like_6 Ligan 20.6 4.5E+02 0.0097 24.0 7.8 34 29-62 2-36 (267)
425 COG0716 FldA Flavodoxins [Ener 20.5 1.7E+02 0.0037 24.7 4.4 40 27-66 2-41 (151)
426 cd06320 PBP1_allose_binding Pe 20.5 4E+02 0.0087 24.6 7.5 32 131-162 56-90 (275)
427 PF13528 Glyco_trans_1_3: Glyc 20.4 5.4E+02 0.012 24.5 8.6 35 123-162 244-278 (318)
428 TIGR01287 nifH nitrogenase iro 20.3 1.7E+02 0.0037 27.6 4.8 38 29-66 2-39 (275)
429 PF06564 YhjQ: YhjQ protein; 20.2 2.2E+02 0.0047 26.5 5.2 37 29-65 4-40 (243)
430 PF03720 UDPG_MGDP_dh_C: UDP-g 20.2 1.1E+02 0.0025 24.0 3.0 22 42-63 17-38 (106)
431 TIGR01755 flav_wrbA NAD(P)H:qu 20.1 1.9E+02 0.0041 25.8 4.8 35 28-63 2-38 (197)
432 PRK06737 acetolactate synthase 20.1 2.9E+02 0.0063 20.4 4.8 29 39-67 11-39 (76)
433 cd03115 SRP The signal recogni 20.1 2.4E+02 0.0052 24.2 5.4 37 30-66 3-39 (173)
434 PRK13235 nifH nitrogenase redu 20.0 1.8E+02 0.004 27.4 5.0 40 28-67 2-41 (274)
No 1
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=100.00 E-value=1.7e-86 Score=677.88 Aligned_cols=463 Identities=28% Similarity=0.521 Sum_probs=397.2
Q ss_pred hccCceEeEEcCCCCCChHHHHHHHHHHHHhCCCcEEEEEeecCCcc---ccCCeEEEEecC-cccchhhHHH--HHhhc
Q psy14941 23 IQQCSKILAIFPTPAKSHQIIFDTILVELYQRGHDLTVITQYPETLV---HYERMKVLDIKG-THTYNSTIED--IYELS 96 (513)
Q Consensus 23 ~~~~~kIL~~~p~~~~gH~~~~~~la~~L~~rGH~Vt~~~~~~~~~~---~~~~~~~i~~~~-~~~~~~~~~~--~~~~~ 96 (513)
.++|+|||+++|.+++||+..+.+++++|++|||+||++++...... ...+++.+.++. .+...+.... .....
T Consensus 17 ~~~~~kIl~~~P~~~~SH~~~~~~l~~~La~rGH~VTvi~p~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 96 (507)
T PHA03392 17 GVRAARILAVFPTPAYSHHSVFKVYVEALAERGHNVTVIKPTLRVYYASHLCGNITEIDASLSVEYFKKLVKSSAVFRKR 96 (507)
T ss_pred ccCcccEEEEcCCCCCcHHHHHHHHHHHHHHcCCeEEEEecccccccccCCCCCEEEEEcCCChHHHHHHHhhhhHHHhh
Confidence 67899999888999999999999999999999999999988642211 145667666542 1221111111 11000
Q ss_pred h---hHHHHHHHHHHHHHHH-HHHHhCCHhHHHHhc-cCCCccEEEEccchhchHHhhhhcc-CCCEEEEeCCCCchhhh
Q psy14941 97 A---DSIKRIHINFIDQEIQ-VENIFLHENMKSIWN-MENKYDLIITEMFLTDAFLVIPYLY-KVPYISIASSTLHPQHS 170 (513)
Q Consensus 97 ~---~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~l~-~~~~~Dlvi~d~~~~~~~~~~a~~l-~iP~i~~~~~~~~~~~~ 170 (513)
. ..+..... ....... |+..+.++.++++|+ .+.+||++|+|.+..|+. .+|+++ ++|.|.++++...+...
T Consensus 97 ~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~L~~~~~kFDlvi~e~~~~c~~-~la~~~~~~p~i~~ss~~~~~~~~ 174 (507)
T PHA03392 97 GVVADSSTVTAD-NYMGLVRMISDQFDLPNVKNLIANKNNKFDLLVTEAFLDYPL-VFSHLFGDAPVIQISSGYGLAENF 174 (507)
T ss_pred hhhhhHHHHHHH-HHHHHHHHHHHHHCCHHHHHHHhcCCCceeEEEecccchhHH-HHHHHhCCCCEEEEcCCCCchhHH
Confidence 0 01111122 3344456 999999999999996 256899999998766555 599999 99999999988877777
Q ss_pred hhcC-CCCCCCccCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhCCC-CCCHHhhhcCccEEEEec
Q psy14941 171 ERLG-LPDNPSYIPSYVSAYTDHMSFTERLSNTFVGLYYKWYYDYKSHGAANRIIHKYFPE-IPRIQDLLNTCSLTLVNT 248 (513)
Q Consensus 171 ~~~g-~p~~~s~~P~~~~~~~~~~~~~~r~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~l~~s 248 (513)
...| .|.+|+|+|...+.++++|+|++|+.|++............. +.++++++++|+. .+++.++.++++++|+|+
T Consensus 175 ~~~gg~p~~~syvP~~~~~~~~~Msf~~R~~N~~~~~~~~~~~~~~~-~~~~~l~~~~f~~~~~~~~~l~~~~~l~lvns 253 (507)
T PHA03392 175 ETMGAVSRHPVYYPNLWRSKFGNLNVWETINEIYTELRLYNEFSLLA-DEQNKLLKQQFGPDTPTIRELRNRVQLLFVNV 253 (507)
T ss_pred HhhccCCCCCeeeCCcccCCCCCCCHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHcCCCCCCHHHHHhCCcEEEEec
Confidence 7778 999999999999999999999999999987776655555544 8899999999986 788999999999999999
Q ss_pred cCccCCCccCCCceEEeCcccccC--CCCCcHHHHHHhhcCCCceEEEEeCcccccCCCCHHHHHHHHHHHhcCCCeEEE
Q psy14941 249 HHTINIARPLPANVVEIGGIHVKP--AKKLNEEMERFLNESHNGVIYFSMGSMLKTSSFPPDKFKAFLKAFSKIPQRVLW 326 (513)
Q Consensus 249 ~~~l~~~~p~~p~~~~vG~l~~~~--~~~l~~~l~~~l~~~~~~~v~vs~Gs~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 326 (513)
++.+|+|||++|++++|||++.++ .+++|+++.+|++++++++|||||||...+..++.+.++.++++++++|++|||
T Consensus 254 ~~~~d~~rp~~p~v~~vGgi~~~~~~~~~l~~~l~~fl~~~~~g~V~vS~GS~~~~~~~~~~~~~~~l~a~~~l~~~viw 333 (507)
T PHA03392 254 HPVFDNNRPVPPSVQYLGGLHLHKKPPQPLDDYLEEFLNNSTNGVVYVSFGSSIDTNDMDNEFLQMLLRTFKKLPYNVLW 333 (507)
T ss_pred CccccCCCCCCCCeeeecccccCCCCCCCCCHHHHHHHhcCCCcEEEEECCCCCcCCCCCHHHHHHHHHHHHhCCCeEEE
Confidence 999999999999999999999853 468999999999976668999999999876678999999999999999999999
Q ss_pred EEcCCCCC-CCCCCCcEEEecCCCccccccCCCceEEeccCCcccHHHHHHcCcceEeeccccCcHHHHHHHHHcCcEEE
Q psy14941 327 KFEDNDTS-IFKPYKNIRTSSWMPQRDIFAHPNMKLFISHGGLLGITEAVYEGIPVLGIPVFGDQWANIKKLESLKAGKL 405 (513)
Q Consensus 327 ~~~~~~~~-~~~~~~nv~~~~~~pq~~lL~h~~~~~~IthgG~~s~~Eal~~GvP~i~~P~~~DQ~~na~~~~~~G~G~~ 405 (513)
+++++..+ + + |+||++.+|+||.++|+||+|++||||||+||++||+++|||+|++|+++||+.||++++++|+|+.
T Consensus 334 ~~~~~~~~~~-~-p~Nv~i~~w~Pq~~lL~hp~v~~fItHGG~~s~~Eal~~GvP~v~iP~~~DQ~~Na~rv~~~G~G~~ 411 (507)
T PHA03392 334 KYDGEVEAIN-L-PANVLTQKWFPQRAVLKHKNVKAFVTQGGVQSTDEAIDALVPMVGLPMMGDQFYNTNKYVELGIGRA 411 (507)
T ss_pred EECCCcCccc-C-CCceEEecCCCHHHHhcCCCCCEEEecCCcccHHHHHHcCCCEEECCCCccHHHHHHHHHHcCcEEE
Confidence 99976554 5 7 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHhC-CCCCccccccCCCHHHHHHHHH
Q psy14941 406 LPYLEITEETVSDALKIVL-SPEYKENAEDLGTRFRDRPQSPLEVAIYWIEYVIKYN-GAYHLQSAAVKLTWYQYYLLDI 483 (513)
Q Consensus 406 l~~~~~~~~~l~~ai~~ll-~~~y~~~a~~~~~~~~~~~~~~~~~a~~~ie~~~~~~-~~~~l~~~~~~~~~~~~~~lDv 483 (513)
+++.++++++|.++|++++ |++|++||+++++.++++|.+|.++|++|||+++|++ |++|||+++.+|+|+|||+|||
T Consensus 412 l~~~~~t~~~l~~ai~~vl~~~~y~~~a~~ls~~~~~~p~~~~~~av~~iE~v~r~~~g~~~lr~~~~~l~~~qy~~lDv 491 (507)
T PHA03392 412 LDTVTVSAAQLVLAIVDVIENPKYRKNLKELRHLIRHQPMTPLHKAIWYTEHVIRNKHGNTSLKTKAANVSYSDYFMSYI 491 (507)
T ss_pred eccCCcCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCCcccccccccCCCHHHHHHHHH
Confidence 9999999999999999999 9999999999999999999999999999999999999 9999999999999999999999
Q ss_pred HHHHHHH
Q psy14941 484 ALVLIVG 490 (513)
Q Consensus 484 ~~~~~~~ 490 (513)
+++++++
T Consensus 492 ~~~~~~~ 498 (507)
T PHA03392 492 LVPLVTF 498 (507)
T ss_pred HHHHHHH
Confidence 8666443
No 2
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=100.00 E-value=1.8e-86 Score=690.94 Aligned_cols=474 Identities=38% Similarity=0.690 Sum_probs=292.2
Q ss_pred ceEeEEcCCCCCChHHHHHHHHHHHHhCCCcEEEEEeecC---C-ccccCCeEEEEecCc----ccchhh---HHHHHh-
Q psy14941 27 SKILAIFPTPAKSHQIIFDTILVELYQRGHDLTVITQYPE---T-LVHYERMKVLDIKGT----HTYNST---IEDIYE- 94 (513)
Q Consensus 27 ~kIL~~~p~~~~gH~~~~~~la~~L~~rGH~Vt~~~~~~~---~-~~~~~~~~~i~~~~~----~~~~~~---~~~~~~- 94 (513)
+||| ++|. ++||+.++.+++++|++|||+||++++... . .. ..++++..++.. +..... ......
T Consensus 1 ~kvL-v~p~-~~SH~~~~~~l~~~L~~rGH~VTvl~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (500)
T PF00201_consen 1 GKVL-VFPM-AYSHFIFMRPLAEELAERGHNVTVLTPSPSSSLNPSK-PSNIRFETYPDPYPEEEFEEIFPEFISKFFSE 77 (500)
T ss_dssp -------------SHHHHHHHHHHHHHH-TTSEEEHHHHHHT-------S-CCEEEE-----TT------TTHHHHHHHH
T ss_pred CEEE-EeCC-CcCHHHHHHHHHHHHHhcCCceEEEEeeccccccccc-ccceeeEEEcCCcchHHHhhhhHHHHHHHhhh
Confidence 5888 6675 789999999999999999999999998652 1 12 445555554311 111111 111111
Q ss_pred hc--h---hHHHHHHHHHHHHHHH-HHHHhCCHhHHHHhccCCCccEEEEccchhchHHhhhhccCCCEEEEeCCCCchh
Q psy14941 95 LS--A---DSIKRIHINFIDQEIQ-VENIFLHENMKSIWNMENKYDLIITEMFLTDAFLVIPYLYKVPYISIASSTLHPQ 168 (513)
Q Consensus 95 ~~--~---~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~~Dlvi~d~~~~~~~~~~a~~l~iP~i~~~~~~~~~~ 168 (513)
.. . ..+..... +...... |+..+.++.+.+.++ +.+||++|+|.+..|+. .+|+.+++|.+.+.+......
T Consensus 78 ~~~~~~~~~~~~~~~~-~~~~~~~~C~~~l~d~~l~~~l~-~~~fDlvI~d~f~~c~~-~la~~l~iP~i~~~s~~~~~~ 154 (500)
T PF00201_consen 78 SSFANSFWEMFKMLNA-FFDFFSKSCEDLLSDPELMEQLK-SEKFDLVISDAFDPCGL-ALAHYLGIPVIIISSSTPMYD 154 (500)
T ss_dssp HCCHHHHHHHHHHHHC-HHHS----E--EEEETTSTTHHH-HHHHCT-EEEEEESSHH-HHHHHHHHTHHHHHHCCSCSC
T ss_pred cccchhHHHHHHHHHH-HHHHHHHHHHHHhhHHHHHHHHH-hhccccceEeeccchhH-HHHHHhcCCeEEEecccccch
Confidence 11 0 11112222 3444556 988898999988888 67899999999876555 699999999877655444333
Q ss_pred hhhh-cCCCCCCCccCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhCCCCCCHHhhhcCccEEEEe
Q psy14941 169 HSER-LGLPDNPSYIPSYVSAYTDHMSFTERLSNTFVGLYYKWYYDYKSHGAANRIIHKYFPEIPRIQDLLNTCSLTLVN 247 (513)
Q Consensus 169 ~~~~-~g~p~~~s~~P~~~~~~~~~~~~~~r~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~ 247 (513)
.... .|.|.+|+|+|...+++++.|+|++|+.|.+.+............+ +++.++++++...+..++.++.+++++|
T Consensus 155 ~~~~~~g~p~~psyvP~~~s~~~~~msf~~Ri~N~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~l~n 233 (500)
T PF00201_consen 155 LSSFSGGVPSPPSYVPSMFSDFSDRMSFWQRIKNFLFYLYFRFIFRYFFSP-QDKLYKKYFGFPFSFRELLSNASLVLIN 233 (500)
T ss_dssp CTCCTSCCCTSTTSTTCBCCCSGTTSSSST--TTSHHHHHHHHHHHHGGGS--TTS-EEESS-GGGCHHHHHHHHHCCSS
T ss_pred hhhhccCCCCChHHhccccccCCCccchhhhhhhhhhhhhhccccccchhh-HHHHHhhhcccccccHHHHHHHHHHhhh
Confidence 3333 4899999999999999999999999999998887777766666544 6667777776534456667788999999
Q ss_pred ccCccCCCccCCCceEEeCcccccCCCCCcHHHHHHhhc-CCCceEEEEeCcccccCCCCHHHHHHHHHHHhcCCCeEEE
Q psy14941 248 THHTINIARPLPANVVEIGGIHVKPAKKLNEEMERFLNE-SHNGVIYFSMGSMLKTSSFPPDKFKAFLKAFSKIPQRVLW 326 (513)
Q Consensus 248 s~~~l~~~~p~~p~~~~vG~l~~~~~~~l~~~l~~~l~~-~~~~~v~vs~Gs~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 326 (513)
+++.+++|+|.+|++++|||++.++++++|+++++|+++ .++++|||||||.+. .++.+..+.++++|+++|++|||
T Consensus 234 s~~~ld~prp~~p~v~~vGgl~~~~~~~l~~~~~~~~~~~~~~~vv~vsfGs~~~--~~~~~~~~~~~~~~~~~~~~~iW 311 (500)
T PF00201_consen 234 SHPSLDFPRPLLPNVVEVGGLHIKPAKPLPEELWNFLDSSGKKGVVYVSFGSIVS--SMPEEKLKEIAEAFENLPQRFIW 311 (500)
T ss_dssp TEEE----HHHHCTSTTGCGC-S----TCHHHHHHHTSTTTTTEEEEEE-TSSST--T-HHHHHHHHHHHHHCSTTEEEE
T ss_pred ccccCcCCcchhhcccccCccccccccccccccchhhhccCCCCEEEEecCcccc--hhHHHHHHHHHHHHhhCCCcccc
Confidence 999999999999999999999998889999999999998 478999999999984 57888899999999999999999
Q ss_pred EEcCCCCCCCCCCCcEEEecCCCccccccCCCceEEeccCCcccHHHHHHcCcceEeeccccCcHHHHHHHHHcCcEEEe
Q psy14941 327 KFEDNDTSIFKPYKNIRTSSWMPQRDIFAHPNMKLFISHGGLLGITEAVYEGIPVLGIPVFGDQWANIKKLESLKAGKLL 406 (513)
Q Consensus 327 ~~~~~~~~~~~~~~nv~~~~~~pq~~lL~h~~~~~~IthgG~~s~~Eal~~GvP~i~~P~~~DQ~~na~~~~~~G~G~~l 406 (513)
++++..... + ++|+++.+|+||.++|+||++++||||||+||++||+++|||||++|+++||+.||++++++|+|+.+
T Consensus 312 ~~~~~~~~~-l-~~n~~~~~W~PQ~~lL~hp~v~~fitHgG~~s~~Ea~~~gvP~l~~P~~~DQ~~na~~~~~~G~g~~l 389 (500)
T PF00201_consen 312 KYEGEPPEN-L-PKNVLIVKWLPQNDLLAHPRVKLFITHGGLNSTQEALYHGVPMLGIPLFGDQPRNAARVEEKGVGVVL 389 (500)
T ss_dssp EETCSHGCH-H-HTTEEEESS--HHHHHTSTTEEEEEES--HHHHHHHHHCT--EEE-GCSTTHHHHHHHHHHTTSEEEE
T ss_pred ccccccccc-c-cceEEEeccccchhhhhcccceeeeeccccchhhhhhhccCCccCCCCcccCCccceEEEEEeeEEEE
Confidence 999855555 7 89999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHhCCCCCccccccCCCHHHHHHHHHHH
Q psy14941 407 PYLEITEETVSDALKIVL-SPEYKENAEDLGTRFRDRPQSPLEVAIYWIEYVIKYNGAYHLQSAAVKLTWYQYYLLDIAL 485 (513)
Q Consensus 407 ~~~~~~~~~l~~ai~~ll-~~~y~~~a~~~~~~~~~~~~~~~~~a~~~ie~~~~~~~~~~l~~~~~~~~~~~~~~lDv~~ 485 (513)
+++++|+++|.++|++++ |++|++||++++++++++|.+|.|+|++||||++|++|++|||+++.+|||+|||+|||++
T Consensus 390 ~~~~~~~~~l~~ai~~vl~~~~y~~~a~~ls~~~~~~p~~p~~~~~~~ie~v~~~~~~~~l~~~~~~l~~~~~~~lDv~~ 469 (500)
T PF00201_consen 390 DKNDLTEEELRAAIREVLENPSYKENAKRLSSLFRDRPISPLERAVWWIEYVARHGGAPHLRSPARDLSFYQYYLLDVIA 469 (500)
T ss_dssp GGGC-SHHHHHHHHHHHHHSHHHHHHHHHHHHTTT---------------------------------------------
T ss_pred EecCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCCcccCChhhcCCHHHHHHHHHHH
Confidence 999999999999999999 9999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHH----HHHhhcccccccc
Q psy14941 486 VLIVGLVSVCFVL----KYLCGSLVRRKHK 511 (513)
Q Consensus 486 ~~~~~~~~~~~~~----~~~~~~~~~~~~k 511 (513)
++++++++++++. ++++++++++|+|
T Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 499 (500)
T PF00201_consen 470 FLLLIILLIIYIIFKICRFVCRKCVKKKKK 499 (500)
T ss_dssp ------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 8876655554443 3346666666666
No 3
>KOG1192|consensus
Probab=100.00 E-value=1.1e-54 Score=452.37 Aligned_cols=453 Identities=29% Similarity=0.468 Sum_probs=344.8
Q ss_pred cCceEeEEcCCCCCChHHHHHHHHHHHHhCCCcEEEEEeecCCccccCCeEE-----EEecCcccchhhHHHHHhhchhH
Q psy14941 25 QCSKILAIFPTPAKSHQIIFDTILVELYQRGHDLTVITQYPETLVHYERMKV-----LDIKGTHTYNSTIEDIYELSADS 99 (513)
Q Consensus 25 ~~~kIL~~~p~~~~gH~~~~~~la~~L~~rGH~Vt~~~~~~~~~~~~~~~~~-----i~~~~~~~~~~~~~~~~~~~~~~ 99 (513)
.+.+||+.+ |++||++|+..+|++|+++||+||++++............. +........... ......+...
T Consensus 5 ~~~~il~~~--p~~sH~~~~~~la~~L~~~gh~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 81 (496)
T KOG1192|consen 5 KAHNILVPF--PGQSHLNPMLQLAKRLAERGHNVTVVTPSFNALKLSKSSKSKSIKKINPPPFEFLTIP-DGLPEGWEDD 81 (496)
T ss_pred cceeEEEEC--CcccHHHHHHHHHHHHHHcCCceEEEEeechhcccCCcccceeeeeeecChHHhhhhh-hhhccchHHH
Confidence 356666444 49999999999999999999999999986643320110111 111111110100 0111111100
Q ss_pred HHHHHHHHHHHHHH-HHHHhCCHhHHHHhccCCCccEEEEccchhchHHhhhhccCCCEEEEeCCCCchhhhhhcCCCCC
Q psy14941 100 IKRIHINFIDQEIQ-VENIFLHENMKSIWNMENKYDLIITEMFLTDAFLVIPYLYKVPYISIASSTLHPQHSERLGLPDN 178 (513)
Q Consensus 100 ~~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~~Dlvi~d~~~~~~~~~~a~~l~iP~i~~~~~~~~~~~~~~~g~p~~ 178 (513)
...... ....... |...+.+...........+||++|+|.+..+.. .+|.... .+...+...........|.|.+
T Consensus 82 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~d~~~~~~~-~~~~~~~--~i~~~~~~~~~~~~~~~g~~~~ 157 (496)
T KOG1192|consen 82 DLDISE-SLLELNKTCEDLLRDPLEKLLLLKSEKFDLIISDPFLGLFL-LLAIPSF--VIPLLSFPTSSAVLLALGLPSP 157 (496)
T ss_pred HHHHHH-HHHHHHHHHHHHHhchHHHHHHhhcCCccEEEechhhHHHH-Hhcccce--EEEeecccCchHHHHhcCCcCc
Confidence 001111 1233344 887776644333322244599999998743322 3444443 2444455555666677899999
Q ss_pred CCccCcccCCCC-CCCCHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhCCC----CCCHHhhhcCccEEEEeccCccC
Q psy14941 179 PSYIPSYVSAYT-DHMSFTERLSNTFVGLYYKWYYDYKSHGAANRIIHKYFPE----IPRIQDLLNTCSLTLVNTHHTIN 253 (513)
Q Consensus 179 ~s~~P~~~~~~~-~~~~~~~r~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~l~~s~~~l~ 253 (513)
.+|+|...+... +.+++++|..|................+..+...+..+.. .+...++..+.+..++|+++.++
T Consensus 158 ~~~~p~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ln~~~~~~ 237 (496)
T KOG1192|consen 158 LSYVPSPFSLSSGDDMSFPERVPNLIKKDLPSFLFSLSDDRKQDKISKELLGDILNWKPTASGIIVNASFIFLNSNPLLD 237 (496)
T ss_pred ccccCcccCccccccCcHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCCcccccccHHHhhhcCeEEEEccCcccC
Confidence 999999887655 7899999999988777777665555445556666666554 24566888999999999999999
Q ss_pred C-CccCCCceEEeCcccccCCC---CCcHHHHHHhhcCCCceEEEEeCcccccCCCCHHHHHHHHHHHhcC-CCeEEEEE
Q psy14941 254 I-ARPLPANVVEIGGIHVKPAK---KLNEEMERFLNESHNGVIYFSMGSMLKTSSFPPDKFKAFLKAFSKI-PQRVLWKF 328 (513)
Q Consensus 254 ~-~~p~~p~~~~vG~l~~~~~~---~l~~~l~~~l~~~~~~~v~vs~Gs~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~ 328 (513)
+ ++|..+++++|||++....+ +++.+|.++++...+++|||||||++.+..+++++...++.+++++ +.+|||++
T Consensus 238 ~~~~~~~~~v~~IG~l~~~~~~~~~~~~~~wl~~~~~~~~~vvyvSfGS~~~~~~lp~~~~~~l~~~l~~~~~~~FiW~~ 317 (496)
T KOG1192|consen 238 FEPRPLLPKVIPIGPLHVKDSKQKSPLPLEWLDILDESRHSVVYISFGSMVNSADLPEEQKKELAKALESLQGVTFLWKY 317 (496)
T ss_pred CCCCCCCCCceEECcEEecCccccccccHHHHHHHhhccCCeEEEECCcccccccCCHHHHHHHHHHHHhCCCceEEEEe
Confidence 9 78889999999999987532 2667887777753469999999999988889999999999999999 55899999
Q ss_pred cCCCC----CCCC--CCCcEEEecCCCcccc-ccCCCceEEeccCCcccHHHHHHcCcceEeeccccCcHHHHHHHHHcC
Q psy14941 329 EDNDT----SIFK--PYKNIRTSSWMPQRDI-FAHPNMKLFISHGGLLGITEAVYEGIPVLGIPVFGDQWANIKKLESLK 401 (513)
Q Consensus 329 ~~~~~----~~~~--~~~nv~~~~~~pq~~l-L~h~~~~~~IthgG~~s~~Eal~~GvP~i~~P~~~DQ~~na~~~~~~G 401 (513)
+.+.. .++. ++.||...+|+||.++ |.|+++++||||||+||++|++++||||+++|+++||+.||+++++.|
T Consensus 318 ~~~~~~~~~~~~~~~~~~nV~~~~W~PQ~~lll~H~~v~~FvTHgG~nSt~E~~~~GvP~v~~Plf~DQ~~Na~~i~~~g 397 (496)
T KOG1192|consen 318 RPDDSIYFPEGLPNRGRGNVVLSKWAPQNDLLLDHPAVGGFVTHGGWNSTLESIYSGVPMVCVPLFGDQPLNARLLVRHG 397 (496)
T ss_pred cCCcchhhhhcCCCCCcCceEEecCCCcHHHhcCCCcCcEEEECCcccHHHHHHhcCCceecCCccccchhHHHHHHhCC
Confidence 97431 2211 0358999999999998 599999999999999999999999999999999999999999999999
Q ss_pred cEEEeccCCCCHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHhCCCCCccccccCCCHHHHHH
Q psy14941 402 AGKLLPYLEITEETVSDALKIVL-SPEYKENAEDLGTRFRDRPQSPLEVAIYWIEYVIKYNGAYHLQSAAVKLTWYQYYL 480 (513)
Q Consensus 402 ~G~~l~~~~~~~~~l~~ai~~ll-~~~y~~~a~~~~~~~~~~~~~~~~~a~~~ie~~~~~~~~~~l~~~~~~~~~~~~~~ 480 (513)
.|.++.+.+++.+++.+++.+++ +++|+++++++++.++++|..| +.+++|+|++.|+++.++++.. .+++|++|++
T Consensus 398 ~~~v~~~~~~~~~~~~~~~~~il~~~~y~~~~~~l~~~~~~~p~~~-~~~~~~~e~~~~~~~~~~l~~~-~~~~~~~~~~ 475 (496)
T KOG1192|consen 398 GGGVLDKRDLVSEELLEAIKEILENEEYKEAAKRLSEILRDQPISP-ELAVKWVEFVARHGGAKHLKEA-AHLSFIEYGS 475 (496)
T ss_pred CEEEEehhhcCcHHHHHHHHHHHcChHHHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHhcCCCcccCcc-ccCChhhhhh
Confidence 99999988888777999999999 9999999999999999999999 9999999999999999999988 8999999999
Q ss_pred HHHHHH
Q psy14941 481 LDIALV 486 (513)
Q Consensus 481 lDv~~~ 486 (513)
+|++++
T Consensus 476 ~d~~~~ 481 (496)
T KOG1192|consen 476 LDVIAF 481 (496)
T ss_pred hHHHHH
Confidence 999977
No 4
>PLN02670 transferase, transferring glycosyl groups
Probab=100.00 E-value=1.7e-48 Score=391.58 Aligned_cols=402 Identities=14% Similarity=0.196 Sum_probs=270.0
Q ss_pred CceEeEEcCCCCCChHHHHHHHHHHHHhCCCcEEEEEeecCCcc-c------cCCeEEEEecCcccchhhHHHHHhhchh
Q psy14941 26 CSKILAIFPTPAKSHQIIFDTILVELYQRGHDLTVITQYPETLV-H------YERMKVLDIKGTHTYNSTIEDIYELSAD 98 (513)
Q Consensus 26 ~~kIL~~~p~~~~gH~~~~~~la~~L~~rGH~Vt~~~~~~~~~~-~------~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 98 (513)
..+|+ ++|++++||++|++.||+.|+.||..||+++++..... . ...++++.++.++. ++...+.....+
T Consensus 6 ~~HVv-l~P~paqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~~~~~i~~~~lp~p~~-dglp~~~~~~~~- 82 (472)
T PLN02670 6 VLHVA-MFPWLAMGHLIPFLRLSKLLAQKGHKISFISTPRNLHRLPKIPSQLSSSITLVSFPLPSV-PGLPSSAESSTD- 82 (472)
T ss_pred CcEEE-EeCChhhhHHHHHHHHHHHHHhCCCEEEEEeCCchHHhhhhccccCCCCeeEEECCCCcc-CCCCCCcccccc-
Confidence 45787 99999999999999999999999999999998654211 0 12366777764332 111111001011
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCHhHHHHhccCCCccEEEEccchhchHHhhhhccCCCEEEEeCCCCchhhhhh------
Q psy14941 99 SIKRIHINFIDQEIQVENIFLHENMKSIWNMENKYDLIITEMFLTDAFLVIPYLYKVPYISIASSTLHPQHSER------ 172 (513)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~Dlvi~d~~~~~~~~~~a~~l~iP~i~~~~~~~~~~~~~~------ 172 (513)
....... +...... ...+.+.++++ +.++++||+|.+..|+. .+|+++|||.+.+++++........
T Consensus 83 ~~~~~~~-~~~~~~~----~~~~~~~~~l~-~~~~~cvI~D~f~~wa~-~vA~~~gIP~~~f~~~~a~~~~~~~~~~~~~ 155 (472)
T PLN02670 83 VPYTKQQ-LLKKAFD----LLEPPLTTFLE-TSKPDWIIYDYASHWLP-SIAAELGISKAFFSLFTAATLSFIGPPSSLM 155 (472)
T ss_pred cchhhHH-HHHHHHH----HhHHHHHHHHH-hCCCcEEEECCcchhHH-HHHHHcCCCEEEEehhhHHHHHHHhhhHhhh
Confidence 0000000 1101111 11245666665 45789999999998888 7999999999999887754332211
Q ss_pred -cCC-CCCCC---ccCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHhhch-hHHHHHHHHhCCCCCCHHhhhcCccEEEE
Q psy14941 173 -LGL-PDNPS---YIPSYVSAYTDHMSFTERLSNTFVGLYYKWYYDYKSH-GAANRIIHKYFPEIPRIQDLLNTCSLTLV 246 (513)
Q Consensus 173 -~g~-p~~~s---~~P~~~~~~~~~~~~~~r~~n~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~l~ 246 (513)
.|. +.+.. .+|... +......-+....-... ...... +...... +.+ .....++.+++
T Consensus 156 ~~~~~~~~~~~~~~~p~~~---P~~~~~~~~~~dlp~~~-----~~~~~~~~~~~~~~-~~~-------~~~~~~~gvlv 219 (472)
T PLN02670 156 EGGDLRSTAEDFTVVPPWV---PFESNIVFRYHEVTKYV-----EKTEEDETGPSDSV-RFG-------FAIGGSDVVII 219 (472)
T ss_pred hcccCCCccccccCCCCcC---CCCccccccHHHhhHHH-----hccCccchHHHHHH-HHH-------hhcccCCEEEE
Confidence 010 00000 011100 00000000001100000 000000 0001111 110 01245789999
Q ss_pred eccCccCCC-----cc-CCCceEEeCccccc--C-C--C----CCcHHHHHHhhcC-CCceEEEEeCcccccCCCCHHHH
Q psy14941 247 NTHHTINIA-----RP-LPANVVEIGGIHVK--P-A--K----KLNEEMERFLNES-HNGVIYFSMGSMLKTSSFPPDKF 310 (513)
Q Consensus 247 ~s~~~l~~~-----~p-~~p~~~~vG~l~~~--~-~--~----~l~~~l~~~l~~~-~~~~v~vs~Gs~~~~~~~~~~~~ 310 (513)
||+.+||.. +. ..+++..|||+... . . . ...+++.+|+++. ++++|||||||.. .++.+++
T Consensus 220 NTf~eLE~~~l~~l~~~~~~~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~---~l~~~q~ 296 (472)
T PLN02670 220 RSSPEFEPEWFDLLSDLYRKPIIPIGFLPPVIEDDEEDDTIDVKGWVRIKEWLDKQRVNSVVYVALGTEA---SLRREEV 296 (472)
T ss_pred eCHHHHhHHHHHHHHHhhCCCeEEEecCCccccccccccccccchhHHHHHHHhcCCCCceEEEEecccc---cCCHHHH
Confidence 999999975 22 23679999999642 1 1 1 1125789999987 5799999999997 7899999
Q ss_pred HHHHHHHhcCCCeEEEEEcCC-CC-----CCCCCCCc---------EEEecCCCccccccCCCceEEeccCCcccHHHHH
Q psy14941 311 KAFLKAFSKIPQRVLWKFEDN-DT-----SIFKPYKN---------IRTSSWMPQRDIFAHPNMKLFISHGGLLGITEAV 375 (513)
Q Consensus 311 ~~~~~~~~~~~~~~i~~~~~~-~~-----~~~~~~~n---------v~~~~~~pq~~lL~h~~~~~~IthgG~~s~~Eal 375 (513)
++++.+|+..+++|||++++. .. .. + |+| +.+.+|+||.++|+|+++++||||||+||++||+
T Consensus 297 ~ela~gl~~s~~~FlWv~r~~~~~~~~~~~~-l-p~~f~~~~~~rG~vv~~W~PQ~~IL~H~~v~~FvtHcGwnS~~Eai 374 (472)
T PLN02670 297 TELALGLEKSETPFFWVLRNEPGTTQNALEM-L-PDGFEERVKGRGMIHVGWVPQVKILSHESVGGFLTHCGWNSVVEGL 374 (472)
T ss_pred HHHHHHHHHCCCCEEEEEcCCcccccchhhc-C-ChHHHHhccCCCeEEeCcCCHHHHhcCcccceeeecCCcchHHHHH
Confidence 999999999999999999852 11 11 3 433 7788999999999999999999999999999999
Q ss_pred HcCcceEeeccccCcHHHHHHHHHcCcEEEeccC----CCCHHHHHHHHHHhc-CH---HHHHHHHHHHHHHhcCCCChH
Q psy14941 376 YEGIPVLGIPVFGDQWANIKKLESLKAGKLLPYL----EITEETVSDALKIVL-SP---EYKENAEDLGTRFRDRPQSPL 447 (513)
Q Consensus 376 ~~GvP~i~~P~~~DQ~~na~~~~~~G~G~~l~~~----~~~~~~l~~ai~~ll-~~---~y~~~a~~~~~~~~~~~~~~~ 447 (513)
++|||||++|+++||+.||++++++|+|+.++.. .++.++|.++|+++| |+ +||+||+++++.++++ +..
T Consensus 375 ~~GVP~l~~P~~~DQ~~Na~~v~~~g~Gv~l~~~~~~~~~~~e~i~~av~~vm~~~~g~~~r~~a~~l~~~~~~~--~~~ 452 (472)
T PLN02670 375 GFGRVLILFPVLNEQGLNTRLLHGKKLGLEVPRDERDGSFTSDSVAESVRLAMVDDAGEEIRDKAKEMRNLFGDM--DRN 452 (472)
T ss_pred HcCCCEEeCcchhccHHHHHHHHHcCeeEEeeccccCCcCcHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHhCc--chh
Confidence 9999999999999999999999999999999743 389999999999999 75 7999999999999999 556
Q ss_pred HHHHHHHHHHHHh
Q psy14941 448 EVAIYWIEYVIKY 460 (513)
Q Consensus 448 ~~a~~~ie~~~~~ 460 (513)
+.+++.++..++.
T Consensus 453 ~~~~~~~~~~l~~ 465 (472)
T PLN02670 453 NRYVDELVHYLRE 465 (472)
T ss_pred HHHHHHHHHHHHH
Confidence 6666666666554
No 5
>PLN02208 glycosyltransferase family protein
Probab=100.00 E-value=9.2e-48 Score=385.43 Aligned_cols=389 Identities=17% Similarity=0.213 Sum_probs=258.6
Q ss_pred CceEeEEcCCCCCChHHHHHHHHHHHHhCCCcEEEEEeecCCcc-c-----cCCeEEEEecCcccchhhHHHHHhhchhH
Q psy14941 26 CSKILAIFPTPAKSHQIIFDTILVELYQRGHDLTVITQYPETLV-H-----YERMKVLDIKGTHTYNSTIEDIYELSADS 99 (513)
Q Consensus 26 ~~kIL~~~p~~~~gH~~~~~~la~~L~~rGH~Vt~~~~~~~~~~-~-----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 99 (513)
..+|+ ++|++++||++|++.+|+.|+++||+||++++...... . ...+.+..++.++. ++....... .. .
T Consensus 4 ~~hvv-~~P~paqGHi~P~l~LAk~La~~G~~VT~vtt~~~~~~i~~~~a~~~~i~~~~l~~p~~-dgLp~g~~~-~~-~ 79 (442)
T PLN02208 4 KFHAF-MFPWFAFGHMIPFLHLANKLAEKGHRVTFLLPKKAQKQLEHHNLFPDSIVFHPLTIPPV-NGLPAGAET-TS-D 79 (442)
T ss_pred CCEEE-EecCccccHHHHHHHHHHHHHhCCCEEEEEeccchhhhhhcccCCCCceEEEEeCCCCc-cCCCCCccc-cc-c
Confidence 35788 99999999999999999999999999999998654322 0 11334444443210 111111000 00 0
Q ss_pred HHHHHHHHHHHHHH-HHHHhCCHhHHHHhccCCCccEEEEccchhchHHhhhhccCCCEEEEeCCCCchhhhhhc--CC-
Q psy14941 100 IKRIHINFIDQEIQ-VENIFLHENMKSIWNMENKYDLIITEMFLTDAFLVIPYLYKVPYISIASSTLHPQHSERL--GL- 175 (513)
Q Consensus 100 ~~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~~Dlvi~d~~~~~~~~~~a~~l~iP~i~~~~~~~~~~~~~~~--g~- 175 (513)
+.. . +...... .+ ...+.+.+.++ +.++|+||+| ++.+.. .+|+.+|||.+.+++++......... +.
T Consensus 80 l~~--~-l~~~~~~~~~--~~~~~l~~~L~-~~~~~cVV~D-~~~wa~-~vA~e~giP~~~f~~~~a~~~~~~~~~~~~~ 151 (442)
T PLN02208 80 IPI--S-MDNLLSEALD--LTRDQVEAAVR-ALRPDLIFFD-FAQWIP-EMAKEHMIKSVSYIIVSATTIAHTHVPGGKL 151 (442)
T ss_pred hhH--H-HHHHHHHHHH--HHHHHHHHHHh-hCCCeEEEEC-CcHhHH-HHHHHhCCCEEEEEhhhHHHHHHHccCcccc
Confidence 100 0 0011111 11 12355677776 5679999999 566666 69999999999998887654332111 00
Q ss_pred CCCCCccCcccCCC-CCCC-CHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhCCCCCCHHhhhcCccEEEEeccCccC
Q psy14941 176 PDNPSYIPSYVSAY-TDHM-SFTERLSNTFVGLYYKWYYDYKSHGAANRIIHKYFPEIPRIQDLLNTCSLTLVNTHHTIN 253 (513)
Q Consensus 176 p~~~s~~P~~~~~~-~~~~-~~~~r~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~s~~~l~ 253 (513)
..+...+|...... ..+. ++ .+.. .......++ ..+....++.+++||+.+||
T Consensus 152 ~~~~pglp~~~~~~~~~~~~~~-~~~~-----------------~~~~~~~~~-------~~~~~~~~~~vl~Ntf~eLE 206 (442)
T PLN02208 152 GVPPPGYPSSKVLFRENDAHAL-ATLS-----------------IFYKRLYHQ-------ITTGLKSCDVIALRTCKEIE 206 (442)
T ss_pred CCCCCCCCCcccccCHHHcCcc-cccc-----------------hHHHHHHHH-------HHhhhccCCEEEEECHHHHH
Confidence 00111112110000 0000 00 0000 000111111 00113457899999999999
Q ss_pred CC------ccCCCceEEeCcccccCC--CCCcHHHHHHhhcC-CCceEEEEeCcccccCCCCHHHHHHHHHHHhcCCCeE
Q psy14941 254 IA------RPLPANVVEIGGIHVKPA--KKLNEEMERFLNES-HNGVIYFSMGSMLKTSSFPPDKFKAFLKAFSKIPQRV 324 (513)
Q Consensus 254 ~~------~p~~p~~~~vG~l~~~~~--~~l~~~l~~~l~~~-~~~~v~vs~Gs~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (513)
.. ++..|+++.|||++.+.. +++++++.+|++++ ++++|||||||.. .++.+++.+++.+++..+..+
T Consensus 207 ~~~~~~~~~~~~~~v~~vGpl~~~~~~~~~~~~~~~~wLd~~~~~sVvyvSfGS~~---~l~~~q~~e~~~~l~~s~~pf 283 (442)
T PLN02208 207 GKFCDYISRQYHKKVLLTGPMFPEPDTSKPLEEQWSHFLSGFPPKSVVFCSLGSQI---ILEKDQFQELCLGMELTGLPF 283 (442)
T ss_pred HHHHHHHHhhcCCCEEEEeecccCcCCCCCCHHHHHHHHhcCCCCcEEEEeccccc---cCCHHHHHHHHHHHHhCCCcE
Confidence 74 566789999999987543 46789999999987 5799999999998 678888888777654444444
Q ss_pred EEEEcCC----C-CCCCCCC---------CcEEEecCCCccccccCCCceEEeccCCcccHHHHHHcCcceEeeccccCc
Q psy14941 325 LWKFEDN----D-TSIFKPY---------KNIRTSSWMPQRDIFAHPNMKLFISHGGLLGITEAVYEGIPVLGIPVFGDQ 390 (513)
Q Consensus 325 i~~~~~~----~-~~~~~~~---------~nv~~~~~~pq~~lL~h~~~~~~IthgG~~s~~Eal~~GvP~i~~P~~~DQ 390 (513)
+|+++.+ . ... + | .|+.+.+|+||.++|+||++++||||||+||++||+++|||||++|+++||
T Consensus 284 ~wv~r~~~~~~~~~~~-l-p~~f~~r~~~~g~~v~~W~PQ~~iL~H~~v~~FvtHcG~nS~~Eai~~GVP~l~~P~~~DQ 361 (442)
T PLN02208 284 LIAVKPPRGSSTVQEG-L-PEGFEERVKGRGVVWGGWVQQPLILDHPSIGCFVNHCGPGTIWESLVSDCQMVLIPFLSDQ 361 (442)
T ss_pred EEEEeCCCcccchhhh-C-CHHHHHHHhcCCcEeeccCCHHHHhcCCccCeEEccCCchHHHHHHHcCCCEEecCcchhh
Confidence 4544421 1 112 3 3 689999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH-cCcEEEeccCC---CCHHHHHHHHHHhc-CHH-----HHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q psy14941 391 WANIKKLES-LKAGKLLPYLE---ITEETVSDALKIVL-SPE-----YKENAEDLGTRFRDRPQSPLEVAIYWIEYV 457 (513)
Q Consensus 391 ~~na~~~~~-~G~G~~l~~~~---~~~~~l~~ai~~ll-~~~-----y~~~a~~~~~~~~~~~~~~~~~a~~~ie~~ 457 (513)
+.||+++++ +|+|+.++.++ ++.++|.++|++++ |++ +|++++++++.+.+. -++.....+.|+.+
T Consensus 362 ~~na~~~~~~~g~gv~~~~~~~~~~~~~~l~~ai~~~m~~~~e~g~~~r~~~~~~~~~~~~~-gsS~~~l~~~v~~l 437 (442)
T PLN02208 362 VLFTRLMTEEFEVSVEVSREKTGWFSKESLSNAIKSVMDKDSDLGKLVRSNHTKLKEILVSP-GLLTGYVDKFVEEL 437 (442)
T ss_pred HHHHHHHHHHhceeEEeccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHhcC-CcHHHHHHHHHHHH
Confidence 999998776 99999997654 89999999999999 653 999999999998654 23344444444444
No 6
>PLN02562 UDP-glycosyltransferase
Probab=100.00 E-value=5.4e-47 Score=382.05 Aligned_cols=372 Identities=19% Similarity=0.250 Sum_probs=254.8
Q ss_pred CceEeEEcCCCCCChHHHHHHHHHHHHhCCCcEEEEEeecCCcc-c-----cCCeEEEEecCcccchhhHHHHHhhchhH
Q psy14941 26 CSKILAIFPTPAKSHQIIFDTILVELYQRGHDLTVITQYPETLV-H-----YERMKVLDIKGTHTYNSTIEDIYELSADS 99 (513)
Q Consensus 26 ~~kIL~~~p~~~~gH~~~~~~la~~L~~rGH~Vt~~~~~~~~~~-~-----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 99 (513)
..+|+ ++|+|++||++|++.+|+.|+.+|++||++++...... . ..+++++.+|.. ...+. .. .
T Consensus 6 ~~HVV-lvPfPaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~~~~~~~~~~~i~~v~lp~g-~~~~~-------~~-~ 75 (448)
T PLN02562 6 RPKII-LVPYPAQGHVTPMLKLASAFLSRGFEPVVITPEFIHRRISATLDPKLGITFMSISDG-QDDDP-------PR-D 75 (448)
T ss_pred CcEEE-EEcCccccCHHHHHHHHHHHHhCCCEEEEEeCcchhhhhhhccCCCCCEEEEECCCC-CCCCc-------cc-c
Confidence 35888 89999999999999999999999999999998664321 0 124666666421 11110 00 0
Q ss_pred HHHHHHHHHHHHHHHHHHhCCHhHHHHhcc--C-CCccEEEEccchhchHHhhhhccCCCEEEEeCCCCchhhhh--h--
Q psy14941 100 IKRIHINFIDQEIQVENIFLHENMKSIWNM--E-NKYDLIITEMFLTDAFLVIPYLYKVPYISIASSTLHPQHSE--R-- 172 (513)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~-~~~Dlvi~d~~~~~~~~~~a~~l~iP~i~~~~~~~~~~~~~--~-- 172 (513)
+.. +...... ...+.+.++++. . ..+++||+|.+..|+. ++|+++|||.+.+++.+....... .
T Consensus 76 ~~~----l~~a~~~----~~~~~l~~ll~~l~~~~pv~cvI~D~~~~w~~-~vA~~~giP~~~f~~~~a~~~~~~~~~~~ 146 (448)
T PLN02562 76 FFS----IENSMEN----TMPPQLERLLHKLDEDGEVACMVVDLLASWAI-GVADRCGVPVAGFWPVMLAAYRLIQAIPE 146 (448)
T ss_pred HHH----HHHHHHH----hchHHHHHHHHHhcCCCCcEEEEECCccHhHH-HHHHHhCCCEEEEechhHHHHHHHHHHHH
Confidence 101 1111110 112334444431 1 2358999999988887 799999999999988765433211 0
Q ss_pred ---cCC-CCC--C------CccCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhCCCCCCHHhhhcC
Q psy14941 173 ---LGL-PDN--P------SYIPSYVSAYTDHMSFTERLSNTFVGLYYKWYYDYKSHGAANRIIHKYFPEIPRIQDLLNT 240 (513)
Q Consensus 173 ---~g~-p~~--~------s~~P~~~~~~~~~~~~~~r~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (513)
.+. +.. + ..+|... .++..+ +...+ ......+...+.+.+.+ +....
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~Pg~~-----~l~~~d-l~~~~--------~~~~~~~~~~~~~~~~~-------~~~~~ 205 (448)
T PLN02562 147 LVRTGLISETGCPRQLEKICVLPEQP-----LLSTED-LPWLI--------GTPKARKARFKFWTRTL-------ERTKS 205 (448)
T ss_pred HhhccccccccccccccccccCCCCC-----CCChhh-Ccchh--------cCCCcchHHHHHHHHHH-------hcccc
Confidence 000 000 0 0112110 000000 00000 00000000001111111 11244
Q ss_pred ccEEEEeccCccCCC----------ccCCCceEEeCcccccCC----CC--Cc--HHHHHHhhcC-CCceEEEEeCcccc
Q psy14941 241 CSLTLVNTHHTINIA----------RPLPANVVEIGGIHVKPA----KK--LN--EEMERFLNES-HNGVIYFSMGSMLK 301 (513)
Q Consensus 241 ~~l~l~~s~~~l~~~----------~p~~p~~~~vG~l~~~~~----~~--l~--~~l~~~l~~~-~~~~v~vs~Gs~~~ 301 (513)
++.+++||+.+||.. +|..|+++.|||++.... ++ ++ .++.+|+++. ++++|||||||..
T Consensus 206 ~~~vlvNTf~eLE~~~~~~~~~~~~~~~~~~v~~iGpl~~~~~~~~~~~~~~~~~~~c~~wLd~~~~~svvyvsfGS~~- 284 (448)
T PLN02562 206 LRWILMNSFKDEEYDDVKNHQASYNNGQNPQILQIGPLHNQEATTITKPSFWEEDMSCLGWLQEQKPNSVIYISFGSWV- 284 (448)
T ss_pred CCEEEEcChhhhCHHHHHHHHhhhccccCCCEEEecCcccccccccCCCccccchHHHHHHHhcCCCCceEEEEecccc-
Confidence 678999999999973 456789999999986431 11 23 3466999987 4689999999985
Q ss_pred cCCCCHHHHHHHHHHHhcCCCeEEEEEcCC---CCCC----CCCCCcEEEecCCCccccccCCCceEEeccCCcccHHHH
Q psy14941 302 TSSFPPDKFKAFLKAFSKIPQRVLWKFEDN---DTSI----FKPYKNIRTSSWMPQRDIFAHPNMKLFISHGGLLGITEA 374 (513)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~~----~~~~~nv~~~~~~pq~~lL~h~~~~~~IthgG~~s~~Ea 374 (513)
..++.+++++++.++++.+++|||+++.. .+++ .. ++|+.+.+|+||.++|+|+++++||||||+||++||
T Consensus 285 -~~~~~~~~~~l~~~l~~~g~~fiW~~~~~~~~~l~~~~~~~~-~~~~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Ea 362 (448)
T PLN02562 285 -SPIGESNVRTLALALEASGRPFIWVLNPVWREGLPPGYVERV-SKQGKVVSWAPQLEVLKHQAVGCYLTHCGWNSTMEA 362 (448)
T ss_pred -cCCCHHHHHHHHHHHHHCCCCEEEEEcCCchhhCCHHHHHHh-ccCEEEEecCCHHHHhCCCccceEEecCcchhHHHH
Confidence 25789999999999999999999999642 2332 13 689999999999999999999999999999999999
Q ss_pred HHcCcceEeeccccCcHHHHHHHHH-cCcEEEeccCCCCHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcC
Q psy14941 375 VYEGIPVLGIPVFGDQWANIKKLES-LKAGKLLPYLEITEETVSDALKIVL-SPEYKENAEDLGTRFRDR 442 (513)
Q Consensus 375 l~~GvP~i~~P~~~DQ~~na~~~~~-~G~G~~l~~~~~~~~~l~~ai~~ll-~~~y~~~a~~~~~~~~~~ 442 (513)
+++|||||++|+++||+.||+++++ .|+|+.+. +++.+++.++|+++| |++||+||+++++.++..
T Consensus 363 l~~GvP~l~~P~~~DQ~~na~~~~~~~g~g~~~~--~~~~~~l~~~v~~~l~~~~~r~~a~~l~~~~~~~ 430 (448)
T PLN02562 363 IQCQKRLLCYPVAGDQFVNCAYIVDVWKIGVRIS--GFGQKEVEEGLRKVMEDSGMGERLMKLRERAMGE 430 (448)
T ss_pred HHcCCCEEeCCcccchHHHHHHHHHHhCceeEeC--CCCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999986 69998885 689999999999999 999999999999988764
No 7
>PLN02207 UDP-glycosyltransferase
Probab=100.00 E-value=5.1e-47 Score=380.48 Aligned_cols=376 Identities=16% Similarity=0.232 Sum_probs=256.8
Q ss_pred CceEeEEcCCCCCChHHHHHHHHHHHHhCC--CcEEEEEeecCCc------cc-----cCCeEEEEecCcccchhhHHHH
Q psy14941 26 CSKILAIFPTPAKSHQIIFDTILVELYQRG--HDLTVITQYPETL------VH-----YERMKVLDIKGTHTYNSTIEDI 92 (513)
Q Consensus 26 ~~kIL~~~p~~~~gH~~~~~~la~~L~~rG--H~Vt~~~~~~~~~------~~-----~~~~~~i~~~~~~~~~~~~~~~ 92 (513)
..+++ ++|++++||++|++.+|+.|+.+| ..||++++..... .. ..+++++.+|..+...+. ..
T Consensus 3 ~~hvv-~~P~p~qGHi~P~l~lA~~La~~gg~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~-~~- 79 (468)
T PLN02207 3 NAELI-FIPTPTVGHLVPFLEFARRLIEQDDRIRITILLMKLQGQSHLDTYVKSIASSQPFVRFIDVPELEEKPTL-GG- 79 (468)
T ss_pred CcEEE-EeCCcchhhHHHHHHHHHHHHhCCCCeEEEEEEcCCCcchhhHHhhhhccCCCCCeEEEEeCCCCCCCcc-cc-
Confidence 35787 999999999999999999999998 8999998865321 00 124677777622111100 00
Q ss_pred HhhchhHHHHHHHHHHHHHHHHHHHhCCHhHHHHhcc---C-CCccEEEEccchhchHHhhhhccCCCEEEEeCCCCchh
Q psy14941 93 YELSADSIKRIHINFIDQEIQVENIFLHENMKSIWNM---E-NKYDLIITEMFLTDAFLVIPYLYKVPYISIASSTLHPQ 168 (513)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~---~-~~~Dlvi~d~~~~~~~~~~a~~l~iP~i~~~~~~~~~~ 168 (513)
..+ .... +......+...+ .+.+.++++. . ..+++||+|.++.+.. ++|+++|||.+.+.+++....
T Consensus 80 --~~~-~~~~----~~~~~~~~~~~~-~~~~~~~l~~~~~~~~pv~cvV~D~~~~w~~-~vA~~~gip~~~f~~~~a~~~ 150 (468)
T PLN02207 80 --TQS-VEAY----VYDVIEKNIPLV-RNIVMDILSSLALDGVKVKGFVADFFCLPMI-DVAKDVSLPFYVFLTTNSGFL 150 (468)
T ss_pred --ccC-HHHH----HHHHHHhcchhH-HHHHHHHHHHhccCCCCeEEEEECCcchHHH-HHHHHhCCCEEEEECccHHHH
Confidence 000 0000 111100011000 1223333331 1 2248999999988877 799999999999998886443
Q ss_pred hhhh-c-CCCCCC-----------CccCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhCCCCCCHH
Q psy14941 169 HSER-L-GLPDNP-----------SYIPSYVSAYTDHMSFTERLSNTFVGLYYKWYYDYKSHGAANRIIHKYFPEIPRIQ 235 (513)
Q Consensus 169 ~~~~-~-g~p~~~-----------s~~P~~~~~~~~~~~~~~r~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (513)
.... . ....++ -.+|... ..+...+- ...+. . . .......+. .
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~vPgl~----~~l~~~dl-p~~~~--------~--~-~~~~~~~~~-------~- 206 (468)
T PLN02207 151 AMMQYLADRHSKDTSVFVRNSEEMLSIPGFV----NPVPANVL-PSALF--------V--E-DGYDAYVKL-------A- 206 (468)
T ss_pred HHHHHhhhccccccccCcCCCCCeEECCCCC----CCCChHHC-cchhc--------C--C-ccHHHHHHH-------H-
Confidence 2211 1 111000 0122110 01111110 00000 0 0 000001111 0
Q ss_pred hhhcCccEEEEeccCccCCC-------ccCCCceEEeCcccccCCCCCc-------HHHHHHhhcC-CCceEEEEeCccc
Q psy14941 236 DLLNTCSLTLVNTHHTINIA-------RPLPANVVEIGGIHVKPAKKLN-------EEMERFLNES-HNGVIYFSMGSML 300 (513)
Q Consensus 236 ~~~~~~~l~l~~s~~~l~~~-------~p~~p~~~~vG~l~~~~~~~l~-------~~l~~~l~~~-~~~~v~vs~Gs~~ 300 (513)
....+++.+|+||++++|.+ ++..|++..|||++.....+++ +++.+|++++ ++++|||||||..
T Consensus 207 ~~~~~~~~vlvNtf~~LE~~~~~~~~~~~~~p~v~~VGPl~~~~~~~~~~~~~~~~~~~~~WLd~~~~~sVVyvSfGS~~ 286 (468)
T PLN02207 207 ILFTKANGILVNSSFDIEPYSVNHFLDEQNYPSVYAVGPIFDLKAQPHPEQDLARRDELMKWLDDQPEASVVFLCFGSMG 286 (468)
T ss_pred HhcccCCEEEEEchHHHhHHHHHHHHhccCCCcEEEecCCcccccCCCCccccchhhHHHHHHhcCCCCcEEEEEeccCc
Confidence 11356899999999999998 6777899999999864322222 6799999987 5799999999997
Q ss_pred ccCCCCHHHHHHHHHHHhcCCCeEEEEEcCCC------CCC----CCCCCcEEEecCCCccccccCCCceEEeccCCccc
Q psy14941 301 KTSSFPPDKFKAFLKAFSKIPQRVLWKFEDND------TSI----FKPYKNIRTSSWMPQRDIFAHPNMKLFISHGGLLG 370 (513)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~------~~~----~~~~~nv~~~~~~pq~~lL~h~~~~~~IthgG~~s 370 (513)
.++.+++++++.+|+..+++|||++++.. +++ .. ++|+.+.+|+||.++|+|+++++||||||+||
T Consensus 287 ---~~~~~q~~ela~~l~~~~~~flW~~r~~~~~~~~~lp~~f~er~-~~~g~i~~W~PQ~~IL~H~~vg~FvTH~GwnS 362 (468)
T PLN02207 287 ---RLRGPLVKEIAHGLELCQYRFLWSLRTEEVTNDDLLPEGFLDRV-SGRGMICGWSPQVEILAHKAVGGFVSHCGWNS 362 (468)
T ss_pred ---CCCHHHHHHHHHHHHHCCCcEEEEEeCCCccccccCCHHHHhhc-CCCeEEEEeCCHHHHhcccccceeeecCcccc
Confidence 68999999999999999999999998522 221 13 57889999999999999999999999999999
Q ss_pred HHHHHHcCcceEeeccccCcHHHHHHHHH-cCcEEEec------cC-CCCHHHHHHHHHHhc-C--HHHHHHHHHHHHHH
Q psy14941 371 ITEAVYEGIPVLGIPVFGDQWANIKKLES-LKAGKLLP------YL-EITEETVSDALKIVL-S--PEYKENAEDLGTRF 439 (513)
Q Consensus 371 ~~Eal~~GvP~i~~P~~~DQ~~na~~~~~-~G~G~~l~------~~-~~~~~~l~~ai~~ll-~--~~y~~~a~~~~~~~ 439 (513)
++||+++|||||++|+++||+.||+++++ +|+|+.+. .+ .++.++|.++|+++| + ++||+||+++++++
T Consensus 363 ~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvGv~~~~~~~~~~~~~v~~e~i~~av~~vm~~~~~~~r~~a~~l~~~a 442 (468)
T PLN02207 363 IVESLWFGVPIVTWPMYAEQQLNAFLMVKELKLAVELKLDYRVHSDEIVNANEIETAIRCVMNKDNNVVRKRVMDISQMI 442 (468)
T ss_pred HHHHHHcCCCEEecCccccchhhHHHHHHHhCceEEEecccccccCCcccHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 99999999999999999999999998776 99999763 12 359999999999999 3 79999999999988
Q ss_pred hc
Q psy14941 440 RD 441 (513)
Q Consensus 440 ~~ 441 (513)
++
T Consensus 443 ~~ 444 (468)
T PLN02207 443 QR 444 (468)
T ss_pred HH
Confidence 73
No 8
>PLN02554 UDP-glycosyltransferase family protein
Probab=100.00 E-value=2.6e-45 Score=374.13 Aligned_cols=384 Identities=18% Similarity=0.266 Sum_probs=258.5
Q ss_pred ceEeEEcCCCCCChHHHHHHHHHHHHhCC--CcEEEEEeecCCcc--------c------cCCeEEEEecCcccchhhHH
Q psy14941 27 SKILAIFPTPAKSHQIIFDTILVELYQRG--HDLTVITQYPETLV--------H------YERMKVLDIKGTHTYNSTIE 90 (513)
Q Consensus 27 ~kIL~~~p~~~~gH~~~~~~la~~L~~rG--H~Vt~~~~~~~~~~--------~------~~~~~~i~~~~~~~~~~~~~ 90 (513)
.+|+ ++|++++||++|++.||+.|+.+| ..||+++++..... . ..+++++.+|....... .
T Consensus 3 ~hvv-l~P~paqGHi~P~l~LAk~La~~G~~~~vT~v~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~--~ 79 (481)
T PLN02554 3 IELV-FIPSPGIGHLRPTVELAKLLVDSDDRLSITVIIIPSRSGDDASSSAYIASLSASSEDRLRYEVISAGDQPTT--E 79 (481)
T ss_pred eEEE-EeCCcchhhHHHHHHHHHHHHhCCCCEEEEEEeCCCccchhhhhhhhhhhcccCCCCCeEEEEcCCCCCCcc--c
Confidence 4677 899999999999999999999999 78999988543110 0 11366666653221110 0
Q ss_pred HHHhhchhHHHHHHHHHHHHHHH-HHHHhCCHhHHHHhcc----CCC-ccEEEEccchhchHHhhhhccCCCEEEEeCCC
Q psy14941 91 DIYELSADSIKRIHINFIDQEIQ-VENIFLHENMKSIWNM----ENK-YDLIITEMFLTDAFLVIPYLYKVPYISIASST 164 (513)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~----~~~-~Dlvi~d~~~~~~~~~~a~~l~iP~i~~~~~~ 164 (513)
. . . ... +...... .+ +.+.+++.. ..+ .++||+|.++.|+. ++|+++|||.+.+++.+
T Consensus 80 ~-~---~-~~~-----~~~~~~~~~~-----~~l~~l~~~~~~~~~~pv~cvV~D~f~~wa~-dvA~~lgIP~~~F~t~s 143 (481)
T PLN02554 80 D-P---T-FQS-----YIDNQKPKVR-----DAVAKLVDDSSTPSSPRLAGFVVDMFCTSMI-DVANEFGVPSYMFYTSN 143 (481)
T ss_pred c-h---H-HHH-----HHHHHHHHHH-----HHHHHHHhhhccCCCCCeEEEEECCcchhHH-HHHHHhCCCEEEEeCCc
Confidence 0 0 0 000 1111111 11 122233221 112 38999999988877 79999999999999988
Q ss_pred Cchhhhhh-c----C---CC-----CC--CCccCcccCCC--CCCCCH-HHHHHHHHHHHHHHHHHHhhchhHHHHHHHH
Q psy14941 165 LHPQHSER-L----G---LP-----DN--PSYIPSYVSAY--TDHMSF-TERLSNTFVGLYYKWYYDYKSHGAANRIIHK 226 (513)
Q Consensus 165 ~~~~~~~~-~----g---~p-----~~--~s~~P~~~~~~--~~~~~~-~~r~~n~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (513)
........ . + .+ .+ +-.+|.....+ .+-.++ .++ .. ...+.+
T Consensus 144 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iPgl~~pl~~~dlp~~~~~~--~~------------------~~~~~~ 203 (481)
T PLN02554 144 ATFLGLQLHVQMLYDEKKYDVSELEDSEVELDVPSLTRPYPVKCLPSVLLSK--EW------------------LPLFLA 203 (481)
T ss_pred HHHHHHHHhhhhhccccccCccccCCCCceeECCCCCCCCCHHHCCCcccCH--HH------------------HHHHHH
Confidence 65443221 1 0 00 00 00122210000 000000 000 00 000001
Q ss_pred hCCCCCCHHhhhcCccEEEEeccCccCCC-----c---cCCCceEEeCcc-cccCC-----CCCcHHHHHHhhcC-CCce
Q psy14941 227 YFPEIPRIQDLLNTCSLTLVNTHHTINIA-----R---PLPANVVEIGGI-HVKPA-----KKLNEEMERFLNES-HNGV 291 (513)
Q Consensus 227 ~~~~~~~~~~~~~~~~l~l~~s~~~l~~~-----~---p~~p~~~~vG~l-~~~~~-----~~l~~~l~~~l~~~-~~~~ 291 (513)
.. .....++.+++||..++|.. . +..|++..|||+ +...+ .++++++.+|+++. .+++
T Consensus 204 ~~-------~~~~~~~gvlvNt~~eLe~~~~~~l~~~~~~~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~wLd~~~~~sv 276 (481)
T PLN02554 204 QA-------RRFREMKGILVNTVAELEPQALKFFSGSSGDLPPVYPVGPVLHLENSGDDSKDEKQSEILRWLDEQPPKSV 276 (481)
T ss_pred HH-------HhcccCCEEEEechHHHhHHHHHHHHhcccCCCCEEEeCCCccccccccccccccchHHHHHHhcCCCCcE
Confidence 00 11244778899999888863 1 244789999999 33332 34567899999986 5689
Q ss_pred EEEEeCcccccCCCCHHHHHHHHHHHhcCCCeEEEEEcCCC-----------------CCC-C---CCCCcEEEecCCCc
Q psy14941 292 IYFSMGSMLKTSSFPPDKFKAFLKAFSKIPQRVLWKFEDND-----------------TSI-F---KPYKNIRTSSWMPQ 350 (513)
Q Consensus 292 v~vs~Gs~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-----------------~~~-~---~~~~nv~~~~~~pq 350 (513)
|||||||.. .++.+++++++.+++..+++|||++++.. +++ + . ++|+++.+|+||
T Consensus 277 vyvsfGS~~---~~~~~~~~~la~~l~~~~~~flW~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~r~-~~~g~v~~W~PQ 352 (481)
T PLN02554 277 VFLCFGSMG---GFSEEQAREIAIALERSGHRFLWSLRRASPNIMKEPPGEFTNLEEILPEGFLDRT-KDIGKVIGWAPQ 352 (481)
T ss_pred EEEeccccc---cCCHHHHHHHHHHHHHcCCCeEEEEcCCcccccccccccccchhhhCChHHHHHh-ccCceEEeeCCH
Confidence 999999985 78899999999999999999999997410 121 1 2 468889999999
Q ss_pred cccccCCCceEEeccCCcccHHHHHHcCcceEeeccccCcHHHH-HHHHHcCcEEEecc-----------CCCCHHHHHH
Q psy14941 351 RDIFAHPNMKLFISHGGLLGITEAVYEGIPVLGIPVFGDQWANI-KKLESLKAGKLLPY-----------LEITEETVSD 418 (513)
Q Consensus 351 ~~lL~h~~~~~~IthgG~~s~~Eal~~GvP~i~~P~~~DQ~~na-~~~~~~G~G~~l~~-----------~~~~~~~l~~ 418 (513)
.++|+||++++||||||+||++||+++|||||++|+++||+.|| .+++++|+|+.++. ..++.++|.+
T Consensus 353 ~~iL~H~~v~~FvtH~G~nS~~Ea~~~GVP~l~~P~~~DQ~~Na~~~v~~~g~Gv~l~~~~~~~~~~~~~~~~~~e~l~~ 432 (481)
T PLN02554 353 VAVLAKPAIGGFVTHCGWNSILESLWFGVPMAAWPLYAEQKFNAFEMVEELGLAVEIRKYWRGDLLAGEMETVTAEEIER 432 (481)
T ss_pred HHHhCCcccCcccccCccchHHHHHHcCCCEEecCccccchhhHHHHHHHhCceEEeeccccccccccccCeEcHHHHHH
Confidence 99999999999999999999999999999999999999999999 55788999999863 3579999999
Q ss_pred HHHHhc--CHHHHHHHHHHHHHHhcC---CCChHHHHHHHHHHHHHh
Q psy14941 419 ALKIVL--SPEYKENAEDLGTRFRDR---PQSPLEVAIYWIEYVIKY 460 (513)
Q Consensus 419 ai~~ll--~~~y~~~a~~~~~~~~~~---~~~~~~~a~~~ie~~~~~ 460 (513)
+|+++| |++||+||+++++++++. .-+......+.|+++.++
T Consensus 433 av~~vm~~~~~~r~~a~~l~~~~~~av~~gGss~~~l~~lv~~~~~~ 479 (481)
T PLN02554 433 GIRCLMEQDSDVRKRVKEMSEKCHVALMDGGSSHTALKKFIQDVTKN 479 (481)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhh
Confidence 999999 689999999999998843 112334455555555443
No 9
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=7.9e-45 Score=365.18 Aligned_cols=368 Identities=19% Similarity=0.307 Sum_probs=253.2
Q ss_pred CceEeEEcCCCCCChHHHHHHHHHHHHhCCCcEEEEEeecCC-ccc--cCCeEEEEecCcccchhhHHHHHhhchhHHHH
Q psy14941 26 CSKILAIFPTPAKSHQIIFDTILVELYQRGHDLTVITQYPET-LVH--YERMKVLDIKGTHTYNSTIEDIYELSADSIKR 102 (513)
Q Consensus 26 ~~kIL~~~p~~~~gH~~~~~~la~~L~~rGH~Vt~~~~~~~~-~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (513)
..+|+ ++|++++||++|++.||+.|+.+|+.||+++++... ... ..++++..+|. ..+.+...+ . . ...
T Consensus 7 ~~HVv-lvPfpaqGHi~P~l~LAk~La~~G~~VT~v~T~~n~~~~~~~~~~i~~~~ip~-glp~~~~~~---~-~-~~~- 78 (451)
T PLN02410 7 RRRVV-LVPVPAQGHISPMMQLAKTLHLKGFSITIAQTKFNYFSPSDDFTDFQFVTIPE-SLPESDFKN---L-G-PIE- 78 (451)
T ss_pred CCEEE-EECCCccccHHHHHHHHHHHHcCCCEEEEEeCcccccccccCCCCeEEEeCCC-CCCcccccc---c-C-HHH-
Confidence 45787 999999999999999999999999999999986542 110 12455665541 111100000 0 0 111
Q ss_pred HHHHHHHHHHH-HHHHhCCHhHHHHhc-----cCCCccEEEEccchhchHHhhhhccCCCEEEEeCCCCchhhhhh----
Q psy14941 103 IHINFIDQEIQ-VENIFLHENMKSIWN-----MENKYDLIITEMFLTDAFLVIPYLYKVPYISIASSTLHPQHSER---- 172 (513)
Q Consensus 103 ~~~~~~~~~~~-~~~~~~~~~l~~~l~-----~~~~~Dlvi~d~~~~~~~~~~a~~l~iP~i~~~~~~~~~~~~~~---- 172 (513)
+...... +. +.+.+.++ ...++++||+|.+..|.. ++|+++|||.+.+++.+........
T Consensus 79 ----~~~~~~~~~~-----~~~~~~L~~l~~~~~~p~~cVI~D~f~~Wa~-dvA~~lgIP~v~F~t~~a~~~~~~~~~~~ 148 (451)
T PLN02410 79 ----FLHKLNKECQ-----VSFKDCLGQLVLQQGNEIACVVYDEFMYFAE-AAAKEFKLPNVIFSTTSATAFVCRSVFDK 148 (451)
T ss_pred ----HHHHHHHHhH-----HHHHHHHHHHHhccCCCcEEEEECCcchHHH-HHHHHcCCCEEEEEccCHHHHHHHHHHHH
Confidence 1111111 21 12222222 123579999999988887 7999999999999988754432111
Q ss_pred -c--C--CCCC------CCccCcccC-CCCCCCCHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhCCCCCCHHhhhcC
Q psy14941 173 -L--G--LPDN------PSYIPSYVS-AYTDHMSFTERLSNTFVGLYYKWYYDYKSHGAANRIIHKYFPEIPRIQDLLNT 240 (513)
Q Consensus 173 -~--g--~p~~------~s~~P~~~~-~~~~~~~~~~r~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (513)
. + .|.. +..+|.... ...+-.++. ... . ......++... ....
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~iPg~~~~~~~dlp~~~---~~~----~----------~~~~~~~~~~~--------~~~~ 203 (451)
T PLN02410 149 LYANNVLAPLKEPKGQQNELVPEFHPLRCKDFPVSH---WAS----L----------ESIMELYRNTV--------DKRT 203 (451)
T ss_pred HHhccCCCCccccccCccccCCCCCCCChHHCcchh---cCC----c----------HHHHHHHHHHh--------hccc
Confidence 0 0 1110 001222110 000000000 000 0 00000111100 1245
Q ss_pred ccEEEEeccCccCCC-----cc-CCCceEEeCcccccC--CCCCc---HHHHHHhhcC-CCceEEEEeCcccccCCCCHH
Q psy14941 241 CSLTLVNTHHTINIA-----RP-LPANVVEIGGIHVKP--AKKLN---EEMERFLNES-HNGVIYFSMGSMLKTSSFPPD 308 (513)
Q Consensus 241 ~~l~l~~s~~~l~~~-----~p-~~p~~~~vG~l~~~~--~~~l~---~~l~~~l~~~-~~~~v~vs~Gs~~~~~~~~~~ 308 (513)
++.+++||+++||.. +. ..+++..|||++... +..++ +++.+|+++. ++++|||||||.. .++.+
T Consensus 204 ~~~vlvNTf~eLE~~~~~~l~~~~~~~v~~vGpl~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~---~~~~~ 280 (451)
T PLN02410 204 ASSVIINTASCLESSSLSRLQQQLQIPVYPIGPLHLVASAPTSLLEENKSCIEWLNKQKKNSVIFVSLGSLA---LMEIN 280 (451)
T ss_pred CCEEEEeChHHhhHHHHHHHHhccCCCEEEecccccccCCCccccccchHHHHHHHhCCCCcEEEEEccccc---cCCHH
Confidence 789999999999975 22 336899999998542 22222 3578999987 5799999999998 78999
Q ss_pred HHHHHHHHHhcCCCeEEEEEcCC-----C----CCC-C---CCCCcEEEecCCCccccccCCCceEEeccCCcccHHHHH
Q psy14941 309 KFKAFLKAFSKIPQRVLWKFEDN-----D----TSI-F---KPYKNIRTSSWMPQRDIFAHPNMKLFISHGGLLGITEAV 375 (513)
Q Consensus 309 ~~~~~~~~~~~~~~~~i~~~~~~-----~----~~~-~---~~~~nv~~~~~~pq~~lL~h~~~~~~IthgG~~s~~Eal 375 (513)
++++++.+|+..+++|||+++.+ + +++ + . ++|..+.+|+||.++|.|+++++||||||+||++||+
T Consensus 281 q~~ela~gLe~s~~~FlWv~r~~~~~~~~~~~~lp~~f~er~-~~~g~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Ea~ 359 (451)
T PLN02410 281 EVMETASGLDSSNQQFLWVIRPGSVRGSEWIESLPKEFSKII-SGRGYIVKWAPQKEVLSHPAVGGFWSHCGWNSTLESI 359 (451)
T ss_pred HHHHHHHHHHhcCCCeEEEEccCcccccchhhcCChhHHHhc-cCCeEEEccCCHHHHhCCCccCeeeecCchhHHHHHH
Confidence 99999999999999999999842 1 232 1 3 5889999999999999999999999999999999999
Q ss_pred HcCcceEeeccccCcHHHHHHHHHc-CcEEEeccCCCCHHHHHHHHHHhc-CH---HHHHHHHHHHHHHhc
Q psy14941 376 YEGIPVLGIPVFGDQWANIKKLESL-KAGKLLPYLEITEETVSDALKIVL-SP---EYKENAEDLGTRFRD 441 (513)
Q Consensus 376 ~~GvP~i~~P~~~DQ~~na~~~~~~-G~G~~l~~~~~~~~~l~~ai~~ll-~~---~y~~~a~~~~~~~~~ 441 (513)
++|||||++|+++||+.||+++++. |+|+.+. ..++.++|.++|+++| ++ +||++|+++++.+++
T Consensus 360 ~~GvP~l~~P~~~DQ~~na~~~~~~~~~G~~~~-~~~~~~~v~~av~~lm~~~~~~~~r~~a~~l~~~~~~ 429 (451)
T PLN02410 360 GEGVPMICKPFSSDQKVNARYLECVWKIGIQVE-GDLDRGAVERAVKRLMVEEEGEEMRKRAISLKEQLRA 429 (451)
T ss_pred HcCCCEEeccccccCHHHHHHHHHHhCeeEEeC-CcccHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999875 9999997 6889999999999999 64 799999999988874
No 10
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=2.9e-44 Score=363.61 Aligned_cols=400 Identities=18% Similarity=0.250 Sum_probs=264.2
Q ss_pred ccCceEeEEcCCCCCChHHHHHHHHHHHHhCCCcEEEEEeecCCcc------ccCCeEEEEecCccc---chhhHHHHHh
Q psy14941 24 QQCSKILAIFPTPAKSHQIIFDTILVELYQRGHDLTVITQYPETLV------HYERMKVLDIKGTHT---YNSTIEDIYE 94 (513)
Q Consensus 24 ~~~~kIL~~~p~~~~gH~~~~~~la~~L~~rGH~Vt~~~~~~~~~~------~~~~~~~i~~~~~~~---~~~~~~~~~~ 94 (513)
....+|| ++|+|++||++|++.||+.|+.+|+.||+++++..... ...+++++.++.++. +.+.. +..+
T Consensus 7 ~~~~HVv-l~PfpaqGHi~P~l~LAk~La~~G~~VTfv~T~~n~~~~~~~~~~~~~i~~~~lp~P~~~~lPdG~~-~~~~ 84 (477)
T PLN02863 7 PAGTHVL-VFPFPAQGHMIPLLDLTHRLALRGLTITVLVTPKNLPFLNPLLSKHPSIETLVLPFPSHPSIPSGVE-NVKD 84 (477)
T ss_pred CCCCEEE-EecCcccchHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHhhhcccCCCeeEEeCCCCCcCCCCCCCc-Chhh
Confidence 3457888 99999999999999999999999999999998754211 012355655553321 11211 1011
Q ss_pred hchhHHHHHHHHHHHHHHHHHHHhCCHhHHHHhcc-CCCccEEEEccchhchHHhhhhccCCCEEEEeCCCCchhhhhh-
Q psy14941 95 LSADSIKRIHINFIDQEIQVENIFLHENMKSIWNM-ENKYDLIITEMFLTDAFLVIPYLYKVPYISIASSTLHPQHSER- 172 (513)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~Dlvi~d~~~~~~~~~~a~~l~iP~i~~~~~~~~~~~~~~- 172 (513)
.....+.. +... .. ...+.+.+.+++ ..++++||+|.+..|+. ++|+.+|||.+.+++++........
T Consensus 85 ~~~~~~~~----~~~a---~~--~~~~~~~~~l~~~~~~p~cvI~D~f~~Wa~-dVA~e~GIP~~~F~t~sA~~~~~~~~ 154 (477)
T PLN02863 85 LPPSGFPL----MIHA---LG--ELYAPLLSWFRSHPSPPVAIISDMFLGWTQ-NLACQLGIRRFVFSPSGAMALSIMYS 154 (477)
T ss_pred cchhhHHH----HHHH---HH--HhHHHHHHHHHhCCCCCeEEEEcCchHhHH-HHHHHcCCCEEEEeccCHHHHHHHHH
Confidence 11000111 1111 11 112344455542 24679999999988888 7999999999999998865543221
Q ss_pred --cCCCCC--C---------CccCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhCCCCCCHHhhhc
Q psy14941 173 --LGLPDN--P---------SYIPSYVSAYTDHMSFTERLSNTFVGLYYKWYYDYKSHGAANRIIHKYFPEIPRIQDLLN 239 (513)
Q Consensus 173 --~g~p~~--~---------s~~P~~~~~~~~~~~~~~r~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (513)
.+.|.. + ..+|... ...+.+-. ..+. ...........+.+.+ ....
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~iPg~~-----~~~~~dlp-~~~~--------~~~~~~~~~~~~~~~~-------~~~~ 213 (477)
T PLN02863 155 LWREMPTKINPDDQNEILSFSKIPNCP-----KYPWWQIS-SLYR--------SYVEGDPAWEFIKDSF-------RANI 213 (477)
T ss_pred HhhcccccccccccccccccCCCCCCC-----CcChHhCc-hhhh--------ccCccchHHHHHHHHH-------hhhc
Confidence 111110 0 0122110 01111000 0000 0000000000111111 0124
Q ss_pred CccEEEEeccCccCCC-----cc-CC-CceEEeCcccccCC---------C--C-CcHHHHHHhhcC-CCceEEEEeCcc
Q psy14941 240 TCSLTLVNTHHTINIA-----RP-LP-ANVVEIGGIHVKPA---------K--K-LNEEMERFLNES-HNGVIYFSMGSM 299 (513)
Q Consensus 240 ~~~l~l~~s~~~l~~~-----~p-~~-p~~~~vG~l~~~~~---------~--~-l~~~l~~~l~~~-~~~~v~vs~Gs~ 299 (513)
.++.+++||+.++|.. +. .. +++..|||+..... . . -++++.+|+++. ++++|||||||.
T Consensus 214 ~~~~vlvNTf~eLE~~~~~~~~~~~~~~~v~~IGPL~~~~~~~~~~~~~~~~~~~~~~~~~~WLd~~~~~svVyvsfGS~ 293 (477)
T PLN02863 214 ASWGLVVNSFTELEGIYLEHLKKELGHDRVWAVGPILPLSGEKSGLMERGGPSSVSVDDVMTWLDTCEDHKVVYVCFGSQ 293 (477)
T ss_pred cCCEEEEecHHHHHHHHHHHHHhhcCCCCeEEeCCCcccccccccccccCCcccccHHHHHHHHhcCCCCceEEEEeece
Confidence 5678999999999975 22 22 67999999964221 0 0 145799999987 579999999999
Q ss_pred cccCCCCHHHHHHHHHHHhcCCCeEEEEEcCCC--------CCC-C----CCCCcEEEecCCCccccccCCCceEEeccC
Q psy14941 300 LKTSSFPPDKFKAFLKAFSKIPQRVLWKFEDND--------TSI-F----KPYKNIRTSSWMPQRDIFAHPNMKLFISHG 366 (513)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--------~~~-~----~~~~nv~~~~~~pq~~lL~h~~~~~~Ithg 366 (513)
. .++.+++++++.+++..+.+|||+++... +++ + . ..|+++.+|+||.++|.|+++++|||||
T Consensus 294 ~---~~~~~~~~ela~gL~~~~~~flw~~~~~~~~~~~~~~lp~~~~~r~~-~~g~~v~~w~PQ~~vL~h~~v~~fvtH~ 369 (477)
T PLN02863 294 V---VLTKEQMEALASGLEKSGVHFIWCVKEPVNEESDYSNIPSGFEDRVA-GRGLVIRGWAPQVAILSHRAVGAFLTHC 369 (477)
T ss_pred e---cCCHHHHHHHHHHHHhCCCcEEEEECCCcccccchhhCCHHHHHHhc-cCCEEecCCCCHHHHhcCCCcCeEEecC
Confidence 7 68889999999999999999999997421 111 0 1 3468888999999999999999999999
Q ss_pred CcccHHHHHHcCcceEeeccccCcHHHHHHHH-HcCcEEEecc---CCCCHHHHHHHHHHhc--CHHHHHHHHHHHHHHh
Q psy14941 367 GLLGITEAVYEGIPVLGIPVFGDQWANIKKLE-SLKAGKLLPY---LEITEETVSDALKIVL--SPEYKENAEDLGTRFR 440 (513)
Q Consensus 367 G~~s~~Eal~~GvP~i~~P~~~DQ~~na~~~~-~~G~G~~l~~---~~~~~~~l~~ai~~ll--~~~y~~~a~~~~~~~~ 440 (513)
|+||++||+++|||||++|+++||+.||++++ ++|+|+.+.. ...+.+++.+++++++ +++||+||++++++.+
T Consensus 370 G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~v~~~~gvG~~~~~~~~~~~~~~~v~~~v~~~m~~~~~~r~~a~~l~e~a~ 449 (477)
T PLN02863 370 GWNSVLEGLVAGVPMLAWPMAADQFVNASLLVDELKVAVRVCEGADTVPDSDELARVFMESVSENQVERERAKELRRAAL 449 (477)
T ss_pred CchHHHHHHHcCCCEEeCCccccchhhHHHHHHhhceeEEeccCCCCCcCHHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999976 5799999853 2358999999999988 7899999999998855
Q ss_pred cCC---CChHHHHHHHHHHHHHh
Q psy14941 441 DRP---QSPLEVAIYWIEYVIKY 460 (513)
Q Consensus 441 ~~~---~~~~~~a~~~ie~~~~~ 460 (513)
+.- -++.....+.|+++.+.
T Consensus 450 ~Av~~gGSS~~~l~~~v~~i~~~ 472 (477)
T PLN02863 450 DAIKERGSSVKDLDGFVKHVVEL 472 (477)
T ss_pred HHhccCCcHHHHHHHHHHHHHHh
Confidence 321 12344555556655444
No 11
>PLN03004 UDP-glycosyltransferase
Probab=100.00 E-value=8.6e-45 Score=363.30 Aligned_cols=372 Identities=16% Similarity=0.220 Sum_probs=248.6
Q ss_pred ceEeEEcCCCCCChHHHHHHHHHHHHhCC--CcEEEEEeecCCc---------c---ccCCeEEEEecCcccchhhHHHH
Q psy14941 27 SKILAIFPTPAKSHQIIFDTILVELYQRG--HDLTVITQYPETL---------V---HYERMKVLDIKGTHTYNSTIEDI 92 (513)
Q Consensus 27 ~kIL~~~p~~~~gH~~~~~~la~~L~~rG--H~Vt~~~~~~~~~---------~---~~~~~~~i~~~~~~~~~~~~~~~ 92 (513)
.+|+ ++|++++||++|++.||+.|+.+| +.||+........ . ...+++++.+|...-..+....
T Consensus 4 ~Hvv-l~P~p~qGHi~P~l~LA~~La~~g~~~~vti~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~~~~- 81 (451)
T PLN03004 4 EAIV-LYPAPPIGHLVSMVELGKTILSKNPSLSIHIILVPPPYQPESTATYISSVSSSFPSITFHHLPAVTPYSSSSTS- 81 (451)
T ss_pred cEEE-EeCCcccchHHHHHHHHHHHHhCCCceEEEEEEecCcchhhhhhhhhccccCCCCCeEEEEcCCCCCCCCcccc-
Confidence 4677 999999999999999999999999 6677654432211 0 0124667766522100110000
Q ss_pred HhhchhHHHHHHHHHHHHHHHHHHHhCCHhHHHHhcc---CCCccEEEEccchhchHHhhhhccCCCEEEEeCCCCchhh
Q psy14941 93 YELSADSIKRIHINFIDQEIQVENIFLHENMKSIWNM---ENKYDLIITEMFLTDAFLVIPYLYKVPYISIASSTLHPQH 169 (513)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~---~~~~Dlvi~d~~~~~~~~~~a~~l~iP~i~~~~~~~~~~~ 169 (513)
. .+ .... +......+. +.+.+.++. ...+++||+|.+..|.. .+|+++|||.+.+.+++.....
T Consensus 82 -~-~~-~~~~----~~~~~~~~~-----~~~~~~l~~l~~~~pv~cII~D~~~~Wa~-~vA~~lgIP~v~F~t~sA~~~~ 148 (451)
T PLN03004 82 -R-HH-HESL----LLEILCFSN-----PSVHRTLFSLSRNFNVRAMIIDFFCTAVL-DITADFTFPVYFFYTSGAACLA 148 (451)
T ss_pred -c-cC-HHHH----HHHHHHhhh-----HHHHHHHHhcCCCCCceEEEECCcchhHH-HHHHHhCCCEEEEeCHhHHHHH
Confidence 0 00 0000 111000011 223333331 23459999999988887 7999999999999988764432
Q ss_pred hhh-c---CCCCCC--------CccCcccC-CCCCCCCHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhCCCCCCHHh
Q psy14941 170 SER-L---GLPDNP--------SYIPSYVS-AYTDHMSFTERLSNTFVGLYYKWYYDYKSHGAANRIIHKYFPEIPRIQD 236 (513)
Q Consensus 170 ~~~-~---g~p~~~--------s~~P~~~~-~~~~~~~~~~r~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (513)
... . ..+.+. -.+|.... ...+-.++. +..+ ....+.+.+.. .
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~v~iPg~p~l~~~dlp~~~-~~~~----------------~~~~~~~~~~~-------~ 204 (451)
T PLN03004 149 FSFYLPTIDETTPGKNLKDIPTVHIPGVPPMKGSDMPKAV-LERD----------------DEVYDVFIMFG-------K 204 (451)
T ss_pred HHHHHHhccccccccccccCCeecCCCCCCCChHHCchhh-cCCc----------------hHHHHHHHHHH-------H
Confidence 211 0 101000 01111100 000000010 0000 00000111110 1
Q ss_pred hhcCccEEEEeccCccCCC-----ccC--CCceEEeCcccccCC---CC--CcHHHHHHhhcC-CCceEEEEeCcccccC
Q psy14941 237 LLNTCSLTLVNTHHTINIA-----RPL--PANVVEIGGIHVKPA---KK--LNEEMERFLNES-HNGVIYFSMGSMLKTS 303 (513)
Q Consensus 237 ~~~~~~l~l~~s~~~l~~~-----~p~--~p~~~~vG~l~~~~~---~~--l~~~l~~~l~~~-~~~~v~vs~Gs~~~~~ 303 (513)
....++.+++||+.+||.. +.. .+++..|||+..... .. -+.++.+||+++ ++++|||||||..
T Consensus 205 ~~~~~~~vl~NTf~eLE~~~l~~l~~~~~~~~v~~vGPl~~~~~~~~~~~~~~~~c~~wLd~~~~~sVvyvsfGS~~--- 281 (451)
T PLN03004 205 QLSKSSGIIINTFDALENRAIKAITEELCFRNIYPIGPLIVNGRIEDRNDNKAVSCLNWLDSQPEKSVVFLCFGSLG--- 281 (451)
T ss_pred hhcccCeeeeeeHHHhHHHHHHHHHhcCCCCCEEEEeeeccCccccccccchhhHHHHHHHhCCCCceEEEEecccc---
Confidence 1244678999999999974 221 257999999974321 11 124688999987 6899999999996
Q ss_pred CCCHHHHHHHHHHHhcCCCeEEEEEcCC--------CCCCCCCC---------CcEEEecCCCccccccCCCceEEeccC
Q psy14941 304 SFPPDKFKAFLKAFSKIPQRVLWKFEDN--------DTSIFKPY---------KNIRTSSWMPQRDIFAHPNMKLFISHG 366 (513)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~--------~~~~~~~~---------~nv~~~~~~pq~~lL~h~~~~~~Ithg 366 (513)
.++.+++++++.+|+..+++|||+++.+ +..+.+ | .|+.+.+|+||.++|+|+++++|||||
T Consensus 282 ~~~~~q~~ela~gL~~s~~~FlW~~r~~~~~~~~~~~~~~~l-p~gf~er~~~~g~~v~~W~PQ~~iL~H~~v~~FvTH~ 360 (451)
T PLN03004 282 LFSKEQVIEIAVGLEKSGQRFLWVVRNPPELEKTELDLKSLL-PEGFLSRTEDKGMVVKSWAPQVPVLNHKAVGGFVTHC 360 (451)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEEEcCCccccccccchhhhC-ChHHHHhccCCcEEEEeeCCHHHHhCCCccceEeccC
Confidence 7899999999999999999999999853 111112 3 789999999999999999999999999
Q ss_pred CcccHHHHHHcCcceEeeccccCcHHHHHHHHH-cCcEEEeccC---CCCHHHHHHHHHHhc-CHHHHHHHHHHHHHHhc
Q psy14941 367 GLLGITEAVYEGIPVLGIPVFGDQWANIKKLES-LKAGKLLPYL---EITEETVSDALKIVL-SPEYKENAEDLGTRFRD 441 (513)
Q Consensus 367 G~~s~~Eal~~GvP~i~~P~~~DQ~~na~~~~~-~G~G~~l~~~---~~~~~~l~~ai~~ll-~~~y~~~a~~~~~~~~~ 441 (513)
|+||++||+++|||||++|+++||+.||+++++ .|+|+.++.. .++.++|.++|+++| |++|++++++++++.+.
T Consensus 361 G~nS~lEal~~GVP~v~~P~~~DQ~~na~~~~~~~g~g~~l~~~~~~~~~~e~l~~av~~vm~~~~~r~~a~~~~~~a~~ 440 (451)
T PLN03004 361 GWNSILEAVCAGVPMVAWPLYAEQRFNRVMIVDEIKIAISMNESETGFVSSTEVEKRVQEIIGECPVRERTMAMKNAAEL 440 (451)
T ss_pred cchHHHHHHHcCCCEEeccccccchhhHHHHHHHhCceEEecCCcCCccCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999985 7999999754 469999999999999 99999999999987653
No 12
>PLN03007 UDP-glucosyltransferase family protein
Probab=100.00 E-value=5.3e-45 Score=372.32 Aligned_cols=383 Identities=19% Similarity=0.238 Sum_probs=251.6
Q ss_pred cCceEeEEcCCCCCChHHHHHHHHHHHHhCCCcEEEEEeecCCcc-c---------cCC--eEEEEecCcc----cchhh
Q psy14941 25 QCSKILAIFPTPAKSHQIIFDTILVELYQRGHDLTVITQYPETLV-H---------YER--MKVLDIKGTH----TYNST 88 (513)
Q Consensus 25 ~~~kIL~~~p~~~~gH~~~~~~la~~L~~rGH~Vt~~~~~~~~~~-~---------~~~--~~~i~~~~~~----~~~~~ 88 (513)
...+|| ++|+|++||++|++.||+.|+.|||+||+++++..... . ..+ +.+..++.++ .+.+.
T Consensus 4 ~~~hVv-lvp~pa~GHi~P~L~LAk~L~~rG~~VT~vtt~~~~~~i~~~~a~~~~~~~~~~~~~~~~~~p~~~~glP~g~ 82 (482)
T PLN03007 4 EKLHIL-FFPFMAHGHMIPTLDMAKLFSSRGAKSTILTTPLNAKIFEKPIEAFKNLNPGLEIDIQIFNFPCVELGLPEGC 82 (482)
T ss_pred CCcEEE-EECCCccccHHHHHHHHHHHHhCCCEEEEEECCCchhhhhhhhhhhcccCCCCcceEEEeeCCCCcCCCCCCc
Confidence 346888 89999999999999999999999999999999754321 0 011 1222233221 11111
Q ss_pred HHHHHh---hchhHHHHHHHHHHHHHHHHHHHhCCHhHHHHhccCCCccEEEEccchhchHHhhhhccCCCEEEEeCCCC
Q psy14941 89 IEDIYE---LSADSIKRIHINFIDQEIQVENIFLHENMKSIWNMENKYDLIITEMFLTDAFLVIPYLYKVPYISIASSTL 165 (513)
Q Consensus 89 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~Dlvi~d~~~~~~~~~~a~~l~iP~i~~~~~~~ 165 (513)
++... ........+ ......+... ..+.+.+.++ ..++|+||+|.++.|+. .+|+++|||.+.+++++.
T Consensus 83 -e~~~~~~~~~~~~~~~~----~~~~~~~~~~-l~~~l~~~l~-~~~~~~IV~D~~~~w~~-~vA~~lgIP~v~f~~~~a 154 (482)
T PLN03007 83 -ENVDFITSNNNDDSGDL----FLKFLFSTKY-FKDQLEKLLE-TTRPDCLVADMFFPWAT-EAAEKFGVPRLVFHGTGY 154 (482)
T ss_pred -ccccccccccccchHHH----HHHHHHHHHH-HHHHHHHHHh-cCCCCEEEECCcchhHH-HHHHHhCCCeEEeecccH
Confidence 00000 000000011 0000011111 1245666665 56799999999988877 799999999999988775
Q ss_pred chhhh-hhcCCCCCCCc---------cCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhCCCCCCHH
Q psy14941 166 HPQHS-ERLGLPDNPSY---------IPSYVSAYTDHMSFTERLSNTFVGLYYKWYYDYKSHGAANRIIHKYFPEIPRIQ 235 (513)
Q Consensus 166 ~~~~~-~~~g~p~~~s~---------~P~~~~~~~~~~~~~~r~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (513)
..... .......+... +|..... ..+...+ +.+ .. + . ..+.+. .....
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~p~~--~~~~~~~-~~~-------------~~-~-~-~~~~~~---~~~~~ 212 (482)
T PLN03007 155 FSLCASYCIRVHKPQKKVASSSEPFVIPDLPGD--IVITEEQ-IND-------------AD-E-E-SPMGKF---MKEVR 212 (482)
T ss_pred HHHHHHHHHHhcccccccCCCCceeeCCCCCCc--cccCHHh-cCC-------------CC-C-c-hhHHHH---HHHHH
Confidence 43221 11111111001 1211000 0000000 000 00 0 0 000000 01122
Q ss_pred hhhcCccEEEEeccCccCCC-cc-----CCCceEEeCcccccC---------CCC---CcHHHHHHhhcC-CCceEEEEe
Q psy14941 236 DLLNTCSLTLVNTHHTINIA-RP-----LPANVVEIGGIHVKP---------AKK---LNEEMERFLNES-HNGVIYFSM 296 (513)
Q Consensus 236 ~~~~~~~l~l~~s~~~l~~~-~p-----~~p~~~~vG~l~~~~---------~~~---l~~~l~~~l~~~-~~~~v~vs~ 296 (513)
+...+++.+++||++++|.+ .+ ..+.+.+|||+.... +++ .++++.+|+++. ++++|||||
T Consensus 213 ~~~~~~~~vl~Nt~~~le~~~~~~~~~~~~~~~~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~svvyvsf 292 (482)
T PLN03007 213 ESEVKSFGVLVNSFYELESAYADFYKSFVAKRAWHIGPLSLYNRGFEEKAERGKKANIDEQECLKWLDSKKPDSVIYLSF 292 (482)
T ss_pred hhcccCCEEEEECHHHHHHHHHHHHHhccCCCEEEEccccccccccccccccCCccccchhHHHHHHhcCCCCceEEEee
Confidence 23456789999999988876 22 124689999975421 111 246799999987 688999999
Q ss_pred CcccccCCCCHHHHHHHHHHHhcCCCeEEEEEcCC--------CCCC-C----CCCCcEEEecCCCccccccCCCceEEe
Q psy14941 297 GSMLKTSSFPPDKFKAFLKAFSKIPQRVLWKFEDN--------DTSI-F----KPYKNIRTSSWMPQRDIFAHPNMKLFI 363 (513)
Q Consensus 297 Gs~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--------~~~~-~----~~~~nv~~~~~~pq~~lL~h~~~~~~I 363 (513)
||.. .++.+++.+++.+|+..+++|||+++.. .+++ + . +.|+++.+|+||.++|.|+++++||
T Consensus 293 GS~~---~~~~~~~~~~~~~l~~~~~~flw~~~~~~~~~~~~~~lp~~~~~r~~-~~g~~v~~w~PQ~~iL~h~~v~~fv 368 (482)
T PLN03007 293 GSVA---SFKNEQLFEIAAGLEGSGQNFIWVVRKNENQGEKEEWLPEGFEERTK-GKGLIIRGWAPQVLILDHQATGGFV 368 (482)
T ss_pred cCCc---CCCHHHHHHHHHHHHHCCCCEEEEEecCCcccchhhcCCHHHHHHhc-cCCEEEecCCCHHHHhccCccceee
Confidence 9997 5778999999999999999999999852 1221 1 2 5688999999999999999999999
Q ss_pred ccCCcccHHHHHHcCcceEeeccccCcHHHHHHHH---HcCcEEEe------ccCCCCHHHHHHHHHHhc-CH---HHHH
Q psy14941 364 SHGGLLGITEAVYEGIPVLGIPVFGDQWANIKKLE---SLKAGKLL------PYLEITEETVSDALKIVL-SP---EYKE 430 (513)
Q Consensus 364 thgG~~s~~Eal~~GvP~i~~P~~~DQ~~na~~~~---~~G~G~~l------~~~~~~~~~l~~ai~~ll-~~---~y~~ 430 (513)
||||+||++||+++|||||++|+++||+.||++++ +.|+|+.. +...++.++|.++|+++| |+ +||+
T Consensus 369 tH~G~nS~~Eal~~GVP~v~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~l~~av~~~m~~~~~~~~r~ 448 (482)
T PLN03007 369 THCGWNSLLEGVAAGLPMVTWPVGAEQFYNEKLVTQVLRTGVSVGAKKLVKVKGDFISREKVEKAVREVIVGEEAEERRL 448 (482)
T ss_pred ecCcchHHHHHHHcCCCeeeccchhhhhhhHHHHHHhhcceeEeccccccccccCcccHHHHHHHHHHHhcCcHHHHHHH
Confidence 99999999999999999999999999999999886 34555432 334679999999999999 87 8999
Q ss_pred HHHHHHHHHhcC
Q psy14941 431 NAEDLGTRFRDR 442 (513)
Q Consensus 431 ~a~~~~~~~~~~ 442 (513)
||++++++.++.
T Consensus 449 ~a~~~~~~a~~a 460 (482)
T PLN03007 449 RAKKLAEMAKAA 460 (482)
T ss_pred HHHHHHHHHHHH
Confidence 999999987754
No 13
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=100.00 E-value=2.2e-44 Score=362.16 Aligned_cols=372 Identities=17% Similarity=0.235 Sum_probs=253.6
Q ss_pred CceEeEEcCCCCCChHHHHHHHHHHHH-hCCCcEEEEEeecCCcc------ccCCeEEEEecCcccchhhH-HHHHhhch
Q psy14941 26 CSKILAIFPTPAKSHQIIFDTILVELY-QRGHDLTVITQYPETLV------HYERMKVLDIKGTHTYNSTI-EDIYELSA 97 (513)
Q Consensus 26 ~~kIL~~~p~~~~gH~~~~~~la~~L~-~rGH~Vt~~~~~~~~~~------~~~~~~~i~~~~~~~~~~~~-~~~~~~~~ 97 (513)
..+|+ ++|++++||++|++.||+.|+ .+|+.||+++++..... ...++.++.+|.++. .+.. .. .+
T Consensus 5 ~pHVv-l~P~paqGHi~P~l~LAk~La~~~g~~vT~v~t~~n~~~~~~~~~~~~~i~~~~lp~p~~-~glp~~~----~~ 78 (481)
T PLN02992 5 KPHAA-MFSSPGMGHVIPVIELGKRLSANHGFHVTVFVLETDAASAQSKFLNSTGVDIVGLPSPDI-SGLVDPS----AH 78 (481)
T ss_pred CcEEE-EeCCcccchHHHHHHHHHHHHhCCCcEEEEEeCCCchhhhhhccccCCCceEEECCCccc-cCCCCCC----cc
Confidence 35787 899999999999999999998 78999999999754211 012466666664332 1110 00 00
Q ss_pred hHHHHHHHHHHHHHHHHHHHhCCHhHHHHhcc-CCCccEEEEccchhchHHhhhhccCCCEEEEeCCCCchhhhhh-c--
Q psy14941 98 DSIKRIHINFIDQEIQVENIFLHENMKSIWNM-ENKYDLIITEMFLTDAFLVIPYLYKVPYISIASSTLHPQHSER-L-- 173 (513)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~Dlvi~d~~~~~~~~~~a~~l~iP~i~~~~~~~~~~~~~~-~-- 173 (513)
.... +... .. ...+.+.++++. ..++++||+|.++.++. ++|+++|||.+.+.+++........ .
T Consensus 79 -~~~~----~~~~---~~--~~~~~~~~~l~~~~~~p~cvV~D~f~~Wa~-dVA~elgIP~v~F~t~sA~~~~~~~~~~~ 147 (481)
T PLN02992 79 -VVTK----IGVI---MR--EAVPTLRSKIAEMHQKPTALIVDLFGTDAL-CLGGEFNMLTYIFIASNARFLGVSIYYPT 147 (481)
T ss_pred -HHHH----HHHH---HH--HhHHHHHHHHHhcCCCCeEEEECCcchhHH-HHHHHcCCCEEEEecCcHHHHHHHHhhhh
Confidence 1001 1100 11 112445555542 23689999999988888 7999999999999887764432111 1
Q ss_pred -CCCCC--------CCccCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhCCCCCCHHhhhcCccEE
Q psy14941 174 -GLPDN--------PSYIPSYVSAYTDHMSFTERLSNTFVGLYYKWYYDYKSHGAANRIIHKYFPEIPRIQDLLNTCSLT 244 (513)
Q Consensus 174 -g~p~~--------~s~~P~~~~~~~~~~~~~~r~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 244 (513)
..+.. +-.+|.. ..+.. ....... ... ..+......+. . .....++.+
T Consensus 148 ~~~~~~~~~~~~~~~~~iPg~-----~~l~~----~dlp~~~-----~~~-~~~~~~~~~~~-------~-~~~~~a~gv 204 (481)
T PLN02992 148 LDKDIKEEHTVQRKPLAMPGC-----EPVRF----EDTLDAY-----LVP-DEPVYRDFVRH-------G-LAYPKADGI 204 (481)
T ss_pred hccccccccccCCCCcccCCC-----CccCH----HHhhHhh-----cCC-CcHHHHHHHHH-------H-HhcccCCEE
Confidence 00100 0011111 00111 1100000 000 00001111111 0 113457899
Q ss_pred EEeccCccCCC-----cc-------CCCceEEeCcccccC-CCCCcHHHHHHhhcC-CCceEEEEeCcccccCCCCHHHH
Q psy14941 245 LVNTHHTINIA-----RP-------LPANVVEIGGIHVKP-AKKLNEEMERFLNES-HNGVIYFSMGSMLKTSSFPPDKF 310 (513)
Q Consensus 245 l~~s~~~l~~~-----~p-------~~p~~~~vG~l~~~~-~~~l~~~l~~~l~~~-~~~~v~vs~Gs~~~~~~~~~~~~ 310 (513)
++||..+||.. +. ..+++..|||+.... ...-++++.+||+++ .+++|||||||.. .++.+++
T Consensus 205 lvNTf~eLE~~~l~~l~~~~~~~~~~~~~v~~VGPl~~~~~~~~~~~~c~~wLd~~~~~sVvyvsfGS~~---~l~~~q~ 281 (481)
T PLN02992 205 LVNTWEEMEPKSLKSLQDPKLLGRVARVPVYPIGPLCRPIQSSKTDHPVLDWLNKQPNESVLYISFGSGG---SLSAKQL 281 (481)
T ss_pred EEechHHHhHHHHHHHhhccccccccCCceEEecCccCCcCCCcchHHHHHHHHcCCCCceEEEeecccc---cCCHHHH
Confidence 99999999874 11 125699999996532 222345699999987 6799999999996 7999999
Q ss_pred HHHHHHHhcCCCeEEEEEcCC------------------C-CCCCCCCC---------cEEEecCCCccccccCCCceEE
Q psy14941 311 KAFLKAFSKIPQRVLWKFEDN------------------D-TSIFKPYK---------NIRTSSWMPQRDIFAHPNMKLF 362 (513)
Q Consensus 311 ~~~~~~~~~~~~~~i~~~~~~------------------~-~~~~~~~~---------nv~~~~~~pq~~lL~h~~~~~~ 362 (513)
++++.+|+..+++|||+++.. + ..+.+ |+ ++.+.+|+||.++|+|+++++|
T Consensus 282 ~ela~gL~~s~~~flW~~r~~~~~~~~~~~~~~~~~~~~~~~~~~l-p~~f~eR~~~rg~vv~~W~PQ~~iL~h~~vg~F 360 (481)
T PLN02992 282 TELAWGLEMSQQRFVWVVRPPVDGSACSAYFSANGGETRDNTPEYL-PEGFVSRTHDRGFVVPSWAPQAEILAHQAVGGF 360 (481)
T ss_pred HHHHHHHHHcCCCEEEEEeCCcccccccccccCcccccccchhhhC-CHHHHHHhcCCCEEEeecCCHHHHhCCcccCee
Confidence 999999999999999999521 0 11113 44 5899999999999999999999
Q ss_pred eccCCcccHHHHHHcCcceEeeccccCcHHHHHHHH-HcCcEEEeccC--CCCHHHHHHHHHHhc-C---HHHHHHHHHH
Q psy14941 363 ISHGGLLGITEAVYEGIPVLGIPVFGDQWANIKKLE-SLKAGKLLPYL--EITEETVSDALKIVL-S---PEYKENAEDL 435 (513)
Q Consensus 363 IthgG~~s~~Eal~~GvP~i~~P~~~DQ~~na~~~~-~~G~G~~l~~~--~~~~~~l~~ai~~ll-~---~~y~~~a~~~ 435 (513)
|||||+||++||+++|||||++|+++||+.||++++ ++|+|+.++.. .++.++|.++|++++ | +.++++++++
T Consensus 361 itH~G~nS~~Eal~~GVP~l~~P~~~DQ~~na~~~~~~~g~gv~~~~~~~~~~~~~l~~av~~vm~~~~g~~~r~~a~~~ 440 (481)
T PLN02992 361 LTHCGWSSTLESVVGGVPMIAWPLFAEQNMNAALLSDELGIAVRSDDPKEVISRSKIEALVRKVMVEEEGEEMRRKVKKL 440 (481)
T ss_pred EecCchhHHHHHHHcCCCEEecCccchhHHHHHHHHHHhCeeEEecCCCCcccHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 999999999999999999999999999999999995 89999999763 489999999999999 6 4788888888
Q ss_pred HHHHhc
Q psy14941 436 GTRFRD 441 (513)
Q Consensus 436 ~~~~~~ 441 (513)
++..++
T Consensus 441 ~~~a~~ 446 (481)
T PLN02992 441 RDTAEM 446 (481)
T ss_pred HHHHHH
Confidence 877664
No 14
>PLN02210 UDP-glucosyl transferase
Probab=100.00 E-value=1.2e-44 Score=365.30 Aligned_cols=371 Identities=18% Similarity=0.229 Sum_probs=251.2
Q ss_pred cCceEeEEcCCCCCChHHHHHHHHHH--HHhCCCcEEEEEeecCCccc------cCCeEEEEecCcccchhhHHHHHhhc
Q psy14941 25 QCSKILAIFPTPAKSHQIIFDTILVE--LYQRGHDLTVITQYPETLVH------YERMKVLDIKGTHTYNSTIEDIYELS 96 (513)
Q Consensus 25 ~~~kIL~~~p~~~~gH~~~~~~la~~--L~~rGH~Vt~~~~~~~~~~~------~~~~~~i~~~~~~~~~~~~~~~~~~~ 96 (513)
...+|| ++|+|++||++|++.||+. |++||++||+++++...... ...+.+..++ ...+.+.. .
T Consensus 7 ~~~hvv-~~P~pa~GHi~P~l~La~~L~L~~~G~~VT~v~t~~~~~~~~~~~~~~~~~~~~~~~-~glp~~~~------~ 78 (456)
T PLN02210 7 QETHVL-MVTLAFQGHINPMLKLAKHLSLSSKNLHFTLATTEQARDLLSTVEKPRRPVDLVFFS-DGLPKDDP------R 78 (456)
T ss_pred CCCEEE-EeCCcccccHHHHHHHHHHHHhhcCCcEEEEEeccchhhhhccccCCCCceEEEECC-CCCCCCcc------c
Confidence 346898 9999999999999999999 56999999999997643220 1123333222 11111110 0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhCCHhHHHHhccCCCccEEEEccchhchHHhhhhccCCCEEEEeCCCCchhhhhh-c--
Q psy14941 97 ADSIKRIHINFIDQEIQVENIFLHENMKSIWNMENKYDLIITEMFLTDAFLVIPYLYKVPYISIASSTLHPQHSER-L-- 173 (513)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~Dlvi~d~~~~~~~~~~a~~l~iP~i~~~~~~~~~~~~~~-~-- 173 (513)
+ .. . +...... .. .+.+.+.++ +.++|+||+|.++.++. .+|+++|||.+.+++.....+.... .
T Consensus 79 ~-~~-~----~~~~~~~---~~-~~~l~~~l~-~~~~~~vI~D~~~~w~~-~vA~~lgIP~~~f~~~sa~~~~~~~~~~~ 146 (456)
T PLN02210 79 A-PE-T----LLKSLNK---VG-AKNLSKIIE-EKRYSCIISSPFTPWVP-AVAAAHNIPCAILWIQACGAYSVYYRYYM 146 (456)
T ss_pred C-HH-H----HHHHHHH---hh-hHHHHHHHh-cCCCcEEEECCcchhHH-HHHHHhCCCEEEEecccHHHHHHHHhhhh
Confidence 0 11 1 1111111 11 345667776 56799999999988888 6999999999988776654432211 1
Q ss_pred C-CCCCC-------CccCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhCCCCCCHHhhhcCccEEE
Q psy14941 174 G-LPDNP-------SYIPSYVSAYTDHMSFTERLSNTFVGLYYKWYYDYKSHGAANRIIHKYFPEIPRIQDLLNTCSLTL 245 (513)
Q Consensus 174 g-~p~~~-------s~~P~~~~~~~~~~~~~~r~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l 245 (513)
. .+.+. -.+|.. ..+...+ +...+ ..... .......++ +.+....++.++
T Consensus 147 ~~~~~~~~~~~~~~~~~Pgl-----~~~~~~d-l~~~~--------~~~~~-~~~~~~~~~-------~~~~~~~~~~vl 204 (456)
T PLN02210 147 KTNSFPDLEDLNQTVELPAL-----PLLEVRD-LPSFM--------LPSGG-AHFNNLMAE-------FADCLRYVKWVL 204 (456)
T ss_pred ccCCCCcccccCCeeeCCCC-----CCCChhh-CChhh--------hcCCc-hHHHHHHHH-------HHHhcccCCEEE
Confidence 0 01000 011111 0011111 00000 00000 001111111 111123468999
Q ss_pred EeccCccCCC-----ccCCCceEEeCccccc----C-CC-----------CCcHHHHHHhhcC-CCceEEEEeCcccccC
Q psy14941 246 VNTHHTINIA-----RPLPANVVEIGGIHVK----P-AK-----------KLNEEMERFLNES-HNGVIYFSMGSMLKTS 303 (513)
Q Consensus 246 ~~s~~~l~~~-----~p~~p~~~~vG~l~~~----~-~~-----------~l~~~l~~~l~~~-~~~~v~vs~Gs~~~~~ 303 (513)
+||..++|.. +. .+++.+|||+... . .. ..++++.+|+++. ++++|||||||..
T Consensus 205 vNTf~eLE~~~~~~l~~-~~~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~--- 280 (456)
T PLN02210 205 VNSFYELESEIIESMAD-LKPVIPIGPLVSPFLLGDDEEETLDGKNLDMCKSDDCCMEWLDKQARSSVVYISFGSML--- 280 (456)
T ss_pred EeCHHHHhHHHHHHHhh-cCCEEEEcccCchhhcCcccccccccccccccccchHHHHHHhCCCCCceEEEEecccc---
Confidence 9999999874 22 2579999999631 1 10 1245688999976 5789999999987
Q ss_pred CCCHHHHHHHHHHHhcCCCeEEEEEcCCC----CC---CCCCCCcEEEecCCCccccccCCCceEEeccCCcccHHHHHH
Q psy14941 304 SFPPDKFKAFLKAFSKIPQRVLWKFEDND----TS---IFKPYKNIRTSSWMPQRDIFAHPNMKLFISHGGLLGITEAVY 376 (513)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~---~~~~~~nv~~~~~~pq~~lL~h~~~~~~IthgG~~s~~Eal~ 376 (513)
..+.+++++++.+++..+.+|||+++... .. +...+++..+.+|+||.++|.|+++++||||||+||++||++
T Consensus 281 ~~~~~~~~e~a~~l~~~~~~flw~~~~~~~~~~~~~~~~~~~~~~g~v~~w~PQ~~iL~h~~vg~FitH~G~nS~~Eai~ 360 (456)
T PLN02210 281 ESLENQVETIAKALKNRGVPFLWVIRPKEKAQNVQVLQEMVKEGQGVVLEWSPQEKILSHMAISCFVTHCGWNSTIETVV 360 (456)
T ss_pred cCCHHHHHHHHHHHHhCCCCEEEEEeCCccccchhhHHhhccCCCeEEEecCCHHHHhcCcCcCeEEeeCCcccHHHHHH
Confidence 57899999999999999999999997532 11 101025667889999999999999999999999999999999
Q ss_pred cCcceEeeccccCcHHHHHHHHH-cCcEEEeccC----CCCHHHHHHHHHHhc-CH---HHHHHHHHHHHHHhc
Q psy14941 377 EGIPVLGIPVFGDQWANIKKLES-LKAGKLLPYL----EITEETVSDALKIVL-SP---EYKENAEDLGTRFRD 441 (513)
Q Consensus 377 ~GvP~i~~P~~~DQ~~na~~~~~-~G~G~~l~~~----~~~~~~l~~ai~~ll-~~---~y~~~a~~~~~~~~~ 441 (513)
+|||||++|+++||+.||+++++ .|+|+.+... .++.++|.++|+++| |+ ++|+||+++++..++
T Consensus 361 ~GVP~v~~P~~~DQ~~na~~~~~~~g~G~~l~~~~~~~~~~~~~l~~av~~~m~~~~g~~~r~~a~~l~~~a~~ 434 (456)
T PLN02210 361 AGVPVVAYPSWTDQPIDARLLVDVFGIGVRMRNDAVDGELKVEEVERCIEAVTEGPAAADIRRRAAELKHVARL 434 (456)
T ss_pred cCCCEEecccccccHHHHHHHHHHhCeEEEEeccccCCcCCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999997 8999998642 589999999999999 75 499999999987764
No 15
>PLN00414 glycosyltransferase family protein
Probab=100.00 E-value=4.6e-44 Score=359.15 Aligned_cols=395 Identities=16% Similarity=0.179 Sum_probs=260.6
Q ss_pred cCceEeEEcCCCCCChHHHHHHHHHHHHhCCCcEEEEEeecCCcc-c-----cCCeEEEEecCcccchhhHHHHHhhchh
Q psy14941 25 QCSKILAIFPTPAKSHQIIFDTILVELYQRGHDLTVITQYPETLV-H-----YERMKVLDIKGTHTYNSTIEDIYELSAD 98 (513)
Q Consensus 25 ~~~kIL~~~p~~~~gH~~~~~~la~~L~~rGH~Vt~~~~~~~~~~-~-----~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 98 (513)
+..+|+ ++|++++||++|++.||+.|+++|++||++++...... . ...+.+..++.+. .++.........+
T Consensus 3 ~~~HVv-lvPfpaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~i~~~~~~~~~i~~~~i~lP~-~dGLP~g~e~~~~- 79 (446)
T PLN00414 3 SKFHAF-MYPWFGFGHMIPYLHLANKLAEKGHRVTFFLPKKAHKQLQPLNLFPDSIVFEPLTLPP-VDGLPFGAETASD- 79 (446)
T ss_pred CCCEEE-EecCcccchHHHHHHHHHHHHhCCCEEEEEeCCchhhhhcccccCCCceEEEEecCCC-cCCCCCccccccc-
Confidence 345888 99999999999999999999999999999998654221 0 1135554443221 1111111000000
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCHhHHHHhccCCCccEEEEccchhchHHhhhhccCCCEEEEeCCCCchhhhhhcC---C
Q psy14941 99 SIKRIHINFIDQEIQVENIFLHENMKSIWNMENKYDLIITEMFLTDAFLVIPYLYKVPYISIASSTLHPQHSERLG---L 175 (513)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~Dlvi~d~~~~~~~~~~a~~l~iP~i~~~~~~~~~~~~~~~g---~ 175 (513)
........+... .. ...+.+.+.++ ..++|+||+|. +.|.. ++|+.+|||.+.+++.+.......... .
T Consensus 80 l~~~~~~~~~~a---~~--~l~~~l~~~L~-~~~p~cVV~D~-~~wa~-~vA~~lgIP~~~F~~~~a~~~~~~~~~~~~~ 151 (446)
T PLN00414 80 LPNSTKKPIFDA---MD--LLRDQIEAKVR-ALKPDLIFFDF-VHWVP-EMAKEFGIKSVNYQIISAACVAMVLAPRAEL 151 (446)
T ss_pred chhhHHHHHHHH---HH--HHHHHHHHHHh-cCCCeEEEECC-chhHH-HHHHHhCCCEEEEecHHHHHHHHHhCcHhhc
Confidence 000000001110 11 11245556665 56789999995 67777 799999999999998876443322110 0
Q ss_pred CCCCCccCcccCCCCCCCCHHH-HHHHHHHHHHHHHHHHhhchhHHHHHHHHhCCCCCCHHhhhcCccEEEEeccCccCC
Q psy14941 176 PDNPSYIPSYVSAYTDHMSFTE-RLSNTFVGLYYKWYYDYKSHGAANRIIHKYFPEIPRIQDLLNTCSLTLVNTHHTINI 254 (513)
Q Consensus 176 p~~~s~~P~~~~~~~~~~~~~~-r~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~s~~~l~~ 254 (513)
..++..+|..... ....+ .+...+ ... .....+.. +...+++.+++||+.+||.
T Consensus 152 ~~~~pg~p~~~~~----~~~~~~~~~~~~----~~~------~~~~~~~~-----------~~~~~~~~vlvNTf~eLE~ 206 (446)
T PLN00414 152 GFPPPDYPLSKVA----LRGHDANVCSLF----ANS------HELFGLIT-----------KGLKNCDVVSIRTCVELEG 206 (446)
T ss_pred CCCCCCCCCCcCc----Cchhhcccchhh----ccc------HHHHHHHH-----------HhhccCCEEEEechHHHHH
Confidence 0001111110000 00000 000000 000 00011111 1134578899999999987
Q ss_pred C-----cc-CCCceEEeCcccccCC----CCCcHHHHHHhhcC-CCceEEEEeCcccccCCCCHHHHHHHHHHHhcCCCe
Q psy14941 255 A-----RP-LPANVVEIGGIHVKPA----KKLNEEMERFLNES-HNGVIYFSMGSMLKTSSFPPDKFKAFLKAFSKIPQR 323 (513)
Q Consensus 255 ~-----~p-~~p~~~~vG~l~~~~~----~~l~~~l~~~l~~~-~~~~v~vs~Gs~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (513)
. +. ..+++..|||+..... ...++++.+|||+. ++++|||||||.. .++.+++.++..+++..+.+
T Consensus 207 ~~~~~~~~~~~~~v~~VGPl~~~~~~~~~~~~~~~~~~WLD~q~~~sVvyvsfGS~~---~~~~~q~~e~a~gL~~s~~~ 283 (446)
T PLN00414 207 NLCDFIERQCQRKVLLTGPMLPEPQNKSGKPLEDRWNHWLNGFEPGSVVFCAFGTQF---FFEKDQFQEFCLGMELTGLP 283 (446)
T ss_pred HHHHHHHHhcCCCeEEEcccCCCcccccCcccHHHHHHHHhcCCCCceEEEeecccc---cCCHHHHHHHHHHHHHcCCC
Confidence 5 22 2356899999964321 11235688999987 7899999999997 68899999999999999999
Q ss_pred EEEEEcCC----C----CCC-CCC---CCcEEEecCCCccccccCCCceEEeccCCcccHHHHHHcCcceEeeccccCcH
Q psy14941 324 VLWKFEDN----D----TSI-FKP---YKNIRTSSWMPQRDIFAHPNMKLFISHGGLLGITEAVYEGIPVLGIPVFGDQW 391 (513)
Q Consensus 324 ~i~~~~~~----~----~~~-~~~---~~nv~~~~~~pq~~lL~h~~~~~~IthgG~~s~~Eal~~GvP~i~~P~~~DQ~ 391 (513)
|+|++... + +++ +.+ ..+..+.+|+||.++|.|+++++||||||+||++||+++|||||++|+++||+
T Consensus 284 Flwvvr~~~~~~~~~~~lp~~f~~r~~~~g~vv~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~dQ~ 363 (446)
T PLN00414 284 FLIAVMPPKGSSTVQEALPEGFEERVKGRGIVWEGWVEQPLILSHPSVGCFVNHCGFGSMWESLVSDCQIVFIPQLADQV 363 (446)
T ss_pred eEEEEecCCCcccchhhCChhHHHHhcCCCeEEeccCCHHHHhcCCccceEEecCchhHHHHHHHcCCCEEecCcccchH
Confidence 99998652 1 221 100 34556679999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH-HcCcEEEeccC---CCCHHHHHHHHHHhc-CH-----HHHHHHHHHHHHHhcCCCCh-HHHHHHHHHHHHHh
Q psy14941 392 ANIKKLE-SLKAGKLLPYL---EITEETVSDALKIVL-SP-----EYKENAEDLGTRFRDRPQSP-LEVAIYWIEYVIKY 460 (513)
Q Consensus 392 ~na~~~~-~~G~G~~l~~~---~~~~~~l~~ai~~ll-~~-----~y~~~a~~~~~~~~~~~~~~-~~~a~~~ie~~~~~ 460 (513)
.||++++ +.|+|+.+..+ .++.++|.++++++| |+ ++|++++++++.+.+. ++ .....+.|+.+...
T Consensus 364 ~na~~~~~~~g~g~~~~~~~~~~~~~~~i~~~v~~~m~~~~e~g~~~r~~a~~~~~~~~~~--gg~ss~l~~~v~~~~~~ 441 (446)
T PLN00414 364 LITRLLTEELEVSVKVQREDSGWFSKESLRDTVKSVMDKDSEIGNLVKRNHKKLKETLVSP--GLLSGYADKFVEALENE 441 (446)
T ss_pred HHHHHHHHHhCeEEEeccccCCccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHh
Confidence 9999996 68999999643 389999999999999 74 3999999999998766 44 34455566665443
No 16
>PLN02764 glycosyltransferase family protein
Probab=100.00 E-value=1e-43 Score=354.04 Aligned_cols=397 Identities=16% Similarity=0.219 Sum_probs=263.7
Q ss_pred CceEeEEcCCCCCChHHHHHHHHHHHHhCCCcEEEEEeecCCcc-c-----cCC--eEEEEecCcc-cchhhHHHHHhhc
Q psy14941 26 CSKILAIFPTPAKSHQIIFDTILVELYQRGHDLTVITQYPETLV-H-----YER--MKVLDIKGTH-TYNSTIEDIYELS 96 (513)
Q Consensus 26 ~~kIL~~~p~~~~gH~~~~~~la~~L~~rGH~Vt~~~~~~~~~~-~-----~~~--~~~i~~~~~~-~~~~~~~~~~~~~ 96 (513)
+.+|+ ++|++++||++|++.||+.|+.+|+.||+++++..... . ..+ +.++.+|.++ .+.+. ++..+..
T Consensus 5 ~~Hvv-l~P~paqGHi~P~l~LAk~La~~g~~vT~~tt~~~~~~~~~~~~~~~~~~v~~~~~p~~~glp~g~-e~~~~~~ 82 (453)
T PLN02764 5 KFHVL-MYPWFATGHMTPFLFLANKLAEKGHTVTFLLPKKALKQLEHLNLFPHNIVFRSVTVPHVDGLPVGT-ETVSEIP 82 (453)
T ss_pred CcEEE-EECCcccccHHHHHHHHHHHHhCCCEEEEEeCcchhhhhcccccCCCCceEEEEECCCcCCCCCcc-cccccCC
Confidence 46788 99999999999999999999999999999998654211 0 112 3333343212 11110 1100111
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhCCHhHHHHhccCCCccEEEEccchhchHHhhhhccCCCEEEEeCCCCchhhhhhcCC-
Q psy14941 97 ADSIKRIHINFIDQEIQVENIFLHENMKSIWNMENKYDLIITEMFLTDAFLVIPYLYKVPYISIASSTLHPQHSERLGL- 175 (513)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~Dlvi~d~~~~~~~~~~a~~l~iP~i~~~~~~~~~~~~~~~g~- 175 (513)
...... +... .+ ...+.+.+.|+ ..++|+||+|. ..|.. ++|+.+|||.+.+++.+...........
T Consensus 83 ---~~~~~~-~~~a---~~--~~~~~~~~~l~-~~~~~~iV~D~-~~w~~-~vA~~~gIP~~~f~~~~a~~~~~~~~~~~ 150 (453)
T PLN02764 83 ---VTSADL-LMSA---MD--LTRDQVEVVVR-AVEPDLIFFDF-AHWIP-EVARDFGLKTVKYVVVSASTIASMLVPGG 150 (453)
T ss_pred ---hhHHHH-HHHH---HH--HhHHHHHHHHH-hCCCCEEEECC-chhHH-HHHHHhCCCEEEEEcHHHHHHHHHhcccc
Confidence 000000 1110 11 12456667776 45689999995 66666 7999999999999998775543332110
Q ss_pred --CCCCCccCccc--CCCCCCCCHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhCCCCCCHHhhhcCccEEEEeccCc
Q psy14941 176 --PDNPSYIPSYV--SAYTDHMSFTERLSNTFVGLYYKWYYDYKSHGAANRIIHKYFPEIPRIQDLLNTCSLTLVNTHHT 251 (513)
Q Consensus 176 --p~~~s~~P~~~--~~~~~~~~~~~r~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~s~~~ 251 (513)
+.+...+|... ....+..++.+ +. ...........+++.. .....++.+++||+.+
T Consensus 151 ~~~~~~pglp~~~v~l~~~~l~~~~~-~~------------~~~~~~~~~~~~~~~~-------~~~~~s~~vlvNTf~e 210 (453)
T PLN02764 151 ELGVPPPGYPSSKVLLRKQDAYTMKN-LE------------PTNTIDVGPNLLERVT-------TSLMNSDVIAIRTARE 210 (453)
T ss_pred cCCCCCCCCCCCcccCcHhhCcchhh-cC------------CCccchhHHHHHHHHH-------HhhccCCEEEEeccHH
Confidence 00000111000 00000011100 00 0000000011111110 1134578899999999
Q ss_pred cCCC-----ccC-CCceEEeCcccccC--CCCCcHHHHHHhhcC-CCceEEEEeCcccccCCCCHHHHHHHHHHHhcCCC
Q psy14941 252 INIA-----RPL-PANVVEIGGIHVKP--AKKLNEEMERFLNES-HNGVIYFSMGSMLKTSSFPPDKFKAFLKAFSKIPQ 322 (513)
Q Consensus 252 l~~~-----~p~-~p~~~~vG~l~~~~--~~~l~~~l~~~l~~~-~~~~v~vs~Gs~~~~~~~~~~~~~~~~~~~~~~~~ 322 (513)
||.. +.. .+++..|||+.... ....++++.+|||++ ++++|||||||.. .++.+++.++..+++..+.
T Consensus 211 LE~~~~~~~~~~~~~~v~~VGPL~~~~~~~~~~~~~cl~WLD~q~~~sVvyvsfGS~~---~~~~~q~~ela~gL~~s~~ 287 (453)
T PLN02764 211 IEGNFCDYIEKHCRKKVLLTGPVFPEPDKTRELEERWVKWLSGYEPDSVVFCALGSQV---ILEKDQFQELCLGMELTGS 287 (453)
T ss_pred hhHHHHHHHHhhcCCcEEEeccCccCccccccchhHHHHHHhCCCCCceEEEeecccc---cCCHHHHHHHHHHHHhCCC
Confidence 9975 222 35799999996432 122356899999987 7899999999997 6899999999999999999
Q ss_pred eEEEEEcCC--------CCCC-CCC---CCcEEEecCCCccccccCCCceEEeccCCcccHHHHHHcCcceEeeccccCc
Q psy14941 323 RVLWKFEDN--------DTSI-FKP---YKNIRTSSWMPQRDIFAHPNMKLFISHGGLLGITEAVYEGIPVLGIPVFGDQ 390 (513)
Q Consensus 323 ~~i~~~~~~--------~~~~-~~~---~~nv~~~~~~pq~~lL~h~~~~~~IthgG~~s~~Eal~~GvP~i~~P~~~DQ 390 (513)
+|+|+++.. .+++ +.+ ..++.+.+|+||.++|+|+++++||||||+||++||+++|||||++|+++||
T Consensus 288 pflwv~r~~~~~~~~~~~lp~~f~~r~~grG~v~~~W~PQ~~vL~h~~v~~FvtH~G~nS~~Eal~~GVP~l~~P~~~DQ 367 (453)
T PLN02764 288 PFLVAVKPPRGSSTIQEALPEGFEERVKGRGVVWGGWVQQPLILSHPSVGCFVSHCGFGSMWESLLSDCQIVLVPQLGDQ 367 (453)
T ss_pred CeEEEEeCCCCCcchhhhCCcchHhhhccCCcEEeCCCCHHHHhcCcccCeEEecCCchHHHHHHHcCCCEEeCCcccch
Confidence 999999841 1221 100 3456777999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH-HcCcEEEeccC---CCCHHHHHHHHHHhc-CH-----HHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHh
Q psy14941 391 WANIKKLE-SLKAGKLLPYL---EITEETVSDALKIVL-SP-----EYKENAEDLGTRFRDRPQSPLEVAIYWIEYVIKY 460 (513)
Q Consensus 391 ~~na~~~~-~~G~G~~l~~~---~~~~~~l~~ai~~ll-~~-----~y~~~a~~~~~~~~~~~~~~~~~a~~~ie~~~~~ 460 (513)
+.||++++ ..|+|+.+..+ .++.++|.++++++| ++ ++|++++++++.+++.. +........|+++.+.
T Consensus 368 ~~na~~l~~~~g~gv~~~~~~~~~~~~e~i~~av~~vm~~~~~~g~~~r~~a~~~~~~~~~~G-SS~~~l~~lv~~~~~~ 446 (453)
T PLN02764 368 VLNTRLLSDELKVSVEVAREETGWFSKESLRDAINSVMKRDSEIGNLVKKNHTKWRETLASPG-LLTGYVDNFIESLQDL 446 (453)
T ss_pred HHHHHHHHHHhceEEEeccccCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHh
Confidence 99999996 58999987543 589999999999999 74 39999999999998663 3444555666666554
No 17
>PLN02555 limonoid glucosyltransferase
Probab=100.00 E-value=2.5e-43 Score=355.49 Aligned_cols=393 Identities=17% Similarity=0.201 Sum_probs=258.7
Q ss_pred cCceEeEEcCCCCCChHHHHHHHHHHHHhCCCcEEEEEeecCCcccc------------CCeEEEEec-Ccc-cchhhHH
Q psy14941 25 QCSKILAIFPTPAKSHQIIFDTILVELYQRGHDLTVITQYPETLVHY------------ERMKVLDIK-GTH-TYNSTIE 90 (513)
Q Consensus 25 ~~~kIL~~~p~~~~gH~~~~~~la~~L~~rGH~Vt~~~~~~~~~~~~------------~~~~~i~~~-~~~-~~~~~~~ 90 (513)
...+|+ ++|+|++||++|++.+|+.|+.+|..||+++++....... .....+.++ .++ .+.+. +
T Consensus 6 ~~~HVv-~~PfpaqGHi~Pml~lA~~La~~G~~vT~v~T~~~~~~~~~a~~~~~~~~~~~~~~~i~~~~~pdglp~~~-~ 83 (480)
T PLN02555 6 SLVHVM-LVSFPGQGHVNPLLRLGKLLASKGLLVTFVTTESWGKKMRQANKIQDGVLKPVGDGFIRFEFFEDGWAEDD-P 83 (480)
T ss_pred CCCEEE-EECCcccccHHHHHHHHHHHHhCCCeEEEEeccchhhhhhccccccccccccCCCCeEEEeeCCCCCCCCc-c
Confidence 456888 8999999999999999999999999999999975321100 012223332 221 11111 0
Q ss_pred HHHhhchhHHHHHHHHHHHHHHHHHHHhCCHhHHHHhcc---CCC-ccEEEEccchhchHHhhhhccCCCEEEEeCCCCc
Q psy14941 91 DIYELSADSIKRIHINFIDQEIQVENIFLHENMKSIWNM---ENK-YDLIITEMFLTDAFLVIPYLYKVPYISIASSTLH 166 (513)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~---~~~-~Dlvi~d~~~~~~~~~~a~~l~iP~i~~~~~~~~ 166 (513)
... .+.. +...... ...+.+.+.|+. ..+ +++||+|.++.++. ++|+++|||.+.+.+++..
T Consensus 84 ---~~~--~~~~----~~~~~~~----~~~~~l~~~l~~~~~~~~pv~ciV~D~~~~wa~-~vA~~~gIP~~~F~t~~a~ 149 (480)
T PLN02555 84 ---RRQ--DLDL----YLPQLEL----VGKREIPNLVKRYAEQGRPVSCLINNPFIPWVC-DVAEELGIPSAVLWVQSCA 149 (480)
T ss_pred ---ccc--CHHH----HHHHHHH----hhhHHHHHHHHHHhccCCCceEEEECCcchHHH-HHHHHcCCCeEEeecccHH
Confidence 000 1111 1111111 112334444431 123 49999999998887 7999999999999888765
Q ss_pred hhhhh--h-cCC-CCC-------CCccCcccC-CCCCCCCHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhCCCCCCH
Q psy14941 167 PQHSE--R-LGL-PDN-------PSYIPSYVS-AYTDHMSFTERLSNTFVGLYYKWYYDYKSHGAANRIIHKYFPEIPRI 234 (513)
Q Consensus 167 ~~~~~--~-~g~-p~~-------~s~~P~~~~-~~~~~~~~~~r~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (513)
..... . .+. +.+ +-.+|.... ...+-.++..+ .... ....+.+.+. .
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~iPglp~l~~~dlp~~~~~-~~~~--------------~~~~~~~~~~------~ 208 (480)
T PLN02555 150 CFSAYYHYYHGLVPFPTETEPEIDVQLPCMPLLKYDEIPSFLHP-SSPY--------------PFLRRAILGQ------Y 208 (480)
T ss_pred HHHHHHHHhhcCCCcccccCCCceeecCCCCCcCHhhCcccccC-CCCc--------------hHHHHHHHHH------H
Confidence 43321 1 110 100 001121100 00000111100 0000 0000000000 0
Q ss_pred HhhhcCccEEEEeccCccCCC-----ccCCCceEEeCcccccC----C------CCCcHHHHHHhhcC-CCceEEEEeCc
Q psy14941 235 QDLLNTCSLTLVNTHHTINIA-----RPLPANVVEIGGIHVKP----A------KKLNEEMERFLNES-HNGVIYFSMGS 298 (513)
Q Consensus 235 ~~~~~~~~l~l~~s~~~l~~~-----~p~~p~~~~vG~l~~~~----~------~~l~~~l~~~l~~~-~~~~v~vs~Gs 298 (513)
+....++.+++||+.+||.. +...| +..|||+.... . ...++++.+|+++. ++++|||||||
T Consensus 209 -~~~~~a~~vlvNTf~eLE~~~~~~l~~~~~-v~~iGPl~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS 286 (480)
T PLN02555 209 -KNLDKPFCILIDTFQELEKEIIDYMSKLCP-IKPVGPLFKMAKTPNSDVKGDISKPADDCIEWLDSKPPSSVVYISFGT 286 (480)
T ss_pred -HhcccCCEEEEEchHHHhHHHHHHHhhCCC-EEEeCcccCccccccccccccccccchhHHHHHhCCCCCceeEEEecc
Confidence 11244788999999999975 12234 88999986421 1 12356799999987 46899999999
Q ss_pred ccccCCCCHHHHHHHHHHHhcCCCeEEEEEcCC---------CCCC----CCCCCcEEEecCCCccccccCCCceEEecc
Q psy14941 299 MLKTSSFPPDKFKAFLKAFSKIPQRVLWKFEDN---------DTSI----FKPYKNIRTSSWMPQRDIFAHPNMKLFISH 365 (513)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---------~~~~----~~~~~nv~~~~~~pq~~lL~h~~~~~~Ith 365 (513)
.. .++.+++.+++.+++..+++|||+++.. .+++ .. ++|+.+.+|+||.++|+||++++||||
T Consensus 287 ~~---~~~~~q~~ela~~l~~~~~~flW~~~~~~~~~~~~~~~lp~~~~~~~-~~~g~v~~W~PQ~~iL~H~~v~~FvtH 362 (480)
T PLN02555 287 VV---YLKQEQIDEIAYGVLNSGVSFLWVMRPPHKDSGVEPHVLPEEFLEKA-GDKGKIVQWCPQEKVLAHPSVACFVTH 362 (480)
T ss_pred cc---CCCHHHHHHHHHHHHhcCCeEEEEEecCcccccchhhcCChhhhhhc-CCceEEEecCCHHHHhCCCccCeEEec
Confidence 87 7899999999999999999999998631 1221 13 578999999999999999999999999
Q ss_pred CCcccHHHHHHcCcceEeeccccCcHHHHHHHHHc-CcEEEec-----cCCCCHHHHHHHHHHhc-C---HHHHHHHHHH
Q psy14941 366 GGLLGITEAVYEGIPVLGIPVFGDQWANIKKLESL-KAGKLLP-----YLEITEETVSDALKIVL-S---PEYKENAEDL 435 (513)
Q Consensus 366 gG~~s~~Eal~~GvP~i~~P~~~DQ~~na~~~~~~-G~G~~l~-----~~~~~~~~l~~ai~~ll-~---~~y~~~a~~~ 435 (513)
||+||++||+++|||||++|+++||+.||+++++. |+|+.+. ...++.++|.++|+++| + +++|+||+++
T Consensus 363 ~G~nS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvGv~l~~~~~~~~~v~~~~v~~~v~~vm~~~~g~~~r~ra~~l 442 (480)
T PLN02555 363 CGWNSTMEALSSGVPVVCFPQWGDQVTDAVYLVDVFKTGVRLCRGEAENKLITREEVAECLLEATVGEKAAELKQNALKW 442 (480)
T ss_pred CCcchHHHHHHcCCCEEeCCCccccHHHHHHHHHHhCceEEccCCccccCcCcHHHHHHHHHHHhcCchHHHHHHHHHHH
Confidence 99999999999999999999999999999999875 9999993 34689999999999999 6 4799999999
Q ss_pred HHHHhcCC---CChHHHHHHHHHHHHHh
Q psy14941 436 GTRFRDRP---QSPLEVAIYWIEYVIKY 460 (513)
Q Consensus 436 ~~~~~~~~---~~~~~~a~~~ie~~~~~ 460 (513)
+++.++.- -++.......|+++.+.
T Consensus 443 ~~~a~~A~~egGSS~~~l~~~v~~i~~~ 470 (480)
T PLN02555 443 KEEAEAAVAEGGSSDRNFQEFVDKLVRK 470 (480)
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHhc
Confidence 98866331 12344556666666544
No 18
>PLN02173 UDP-glucosyl transferase family protein
Probab=100.00 E-value=2.7e-43 Score=352.29 Aligned_cols=368 Identities=17% Similarity=0.238 Sum_probs=244.5
Q ss_pred ceEeEEcCCCCCChHHHHHHHHHHHHhCCCcEEEEEeecCCcc----ccCCeEEEEecCcccchhhHHHHHhhchhHHHH
Q psy14941 27 SKILAIFPTPAKSHQIIFDTILVELYQRGHDLTVITQYPETLV----HYERMKVLDIKGTHTYNSTIEDIYELSADSIKR 102 (513)
Q Consensus 27 ~kIL~~~p~~~~gH~~~~~~la~~L~~rGH~Vt~~~~~~~~~~----~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (513)
.+|+ ++|++++||++|++.+|+.|+.+|+.||+++++..... ...+++++.++. ..+.+..+. .++.. .
T Consensus 6 ~hvv-~~P~paqGHi~P~l~lAk~La~~G~~vT~v~t~~~~~~~~~~~~~~i~~~~ipd-glp~~~~~~----~~~~~-~ 78 (449)
T PLN02173 6 GHVL-AVPFPSQGHITPIRQFCKRLHSKGFKTTHTLTTFIFNTIHLDPSSPISIATISD-GYDQGGFSS----AGSVP-E 78 (449)
T ss_pred cEEE-EecCcccccHHHHHHHHHHHHcCCCEEEEEECCchhhhcccCCCCCEEEEEcCC-CCCCccccc----ccCHH-H
Confidence 4787 89999999999999999999999999999998643211 023467776651 111100000 00011 1
Q ss_pred HHHHHHHHHHHHHHHhCCHhHHHHhcc---CCCc-cEEEEccchhchHHhhhhccCCCEEEEeCCCCchhhhhhc---CC
Q psy14941 103 IHINFIDQEIQVENIFLHENMKSIWNM---ENKY-DLIITEMFLTDAFLVIPYLYKVPYISIASSTLHPQHSERL---GL 175 (513)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~l~~~l~~---~~~~-Dlvi~d~~~~~~~~~~a~~l~iP~i~~~~~~~~~~~~~~~---g~ 175 (513)
+...... ...+.+.+.|+. ..+| |+||+|.+..|.. ++|+.+|||.+.+++++......... ..
T Consensus 79 ----~~~~~~~----~~~~~~~~~l~~~~~~~~Pv~cvV~D~f~~Wa~-dVA~elgIP~v~F~~~~a~~~~~~~~~~~~~ 149 (449)
T PLN02173 79 ----YLQNFKT----FGSKTVADIIRKHQSTDNPITCIVYDSFMPWAL-DLAREFGLAAAPFFTQSCAVNYINYLSYINN 149 (449)
T ss_pred ----HHHHHHH----hhhHHHHHHHHHhhccCCCceEEEECCcchhHH-HHHHHhCCCEEEEechHHHHHHHHHhHHhcc
Confidence 1111111 112444555442 1245 9999999988888 79999999999988866433221111 00
Q ss_pred CCCCCccCcccC-CCCCCCCHHH-HHHHHHHHHHHHHHHHhhchhHHHHHHHHhCCCCCCHHhhhcCccEEEEeccCccC
Q psy14941 176 PDNPSYIPSYVS-AYTDHMSFTE-RLSNTFVGLYYKWYYDYKSHGAANRIIHKYFPEIPRIQDLLNTCSLTLVNTHHTIN 253 (513)
Q Consensus 176 p~~~s~~P~~~~-~~~~~~~~~~-r~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~s~~~l~ 253 (513)
...+..+|.... ...+-.++.. +-.+ . .......+. + +....++.+++||..++|
T Consensus 150 ~~~~~~~pg~p~l~~~dlp~~~~~~~~~-------~--------~~~~~~~~~-~-------~~~~~~~~vlvNTf~eLE 206 (449)
T PLN02173 150 GSLTLPIKDLPLLELQDLPTFVTPTGSH-------L--------AYFEMVLQQ-F-------TNFDKADFVLVNSFHDLD 206 (449)
T ss_pred CCccCCCCCCCCCChhhCChhhcCCCCc-------h--------HHHHHHHHH-H-------hhhccCCEEEEeCHHHhh
Confidence 000000111100 0000001000 0000 0 000001111 0 112457889999999999
Q ss_pred CC-----ccCCCceEEeCccccc--------CCC---------CCcHHHHHHhhcC-CCceEEEEeCcccccCCCCHHHH
Q psy14941 254 IA-----RPLPANVVEIGGIHVK--------PAK---------KLNEEMERFLNES-HNGVIYFSMGSMLKTSSFPPDKF 310 (513)
Q Consensus 254 ~~-----~p~~p~~~~vG~l~~~--------~~~---------~l~~~l~~~l~~~-~~~~v~vs~Gs~~~~~~~~~~~~ 310 (513)
.. +.. +++..|||+... ... ..++++.+|+++. ++++|||||||.. .++.+++
T Consensus 207 ~~~~~~~~~~-~~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~WLd~~~~~svvyvsfGS~~---~~~~~~~ 282 (449)
T PLN02173 207 LHENELLSKV-CPVLTIGPTVPSMYLDQQIKSDNDYDLNLFDLKEAALCTDWLDKRPQGSVVYIAFGSMA---KLSSEQM 282 (449)
T ss_pred HHHHHHHHhc-CCeeEEcccCchhhccccccccccccccccccccchHHHHHHhcCCCCceEEEEecccc---cCCHHHH
Confidence 65 222 468899999631 100 1134588999987 5679999999987 6899999
Q ss_pred HHHHHHHhcCCCeEEEEEcCC---CCCC-C----CCCCcEEEecCCCccccccCCCceEEeccCCcccHHHHHHcCcceE
Q psy14941 311 KAFLKAFSKIPQRVLWKFEDN---DTSI-F----KPYKNIRTSSWMPQRDIFAHPNMKLFISHGGLLGITEAVYEGIPVL 382 (513)
Q Consensus 311 ~~~~~~~~~~~~~~i~~~~~~---~~~~-~----~~~~nv~~~~~~pq~~lL~h~~~~~~IthgG~~s~~Eal~~GvP~i 382 (513)
.+++.++. +.+|+|++..+ .+++ + . ++|+.+.+|+||.++|+|+++++||||||+||++||+++|||||
T Consensus 283 ~ela~gLs--~~~flWvvr~~~~~~lp~~~~~~~~-~~~~~i~~W~PQ~~iL~H~~v~~FvtHcGwnS~~Eai~~GVP~l 359 (449)
T PLN02173 283 EEIASAIS--NFSYLWVVRASEESKLPPGFLETVD-KDKSLVLKWSPQLQVLSNKAIGCFMTHCGWNSTMEGLSLGVPMV 359 (449)
T ss_pred HHHHHHhc--CCCEEEEEeccchhcccchHHHhhc-CCceEEeCCCCHHHHhCCCccceEEecCccchHHHHHHcCCCEE
Confidence 99999994 45699999742 1322 1 2 47899999999999999999999999999999999999999999
Q ss_pred eeccccCcHHHHHHHHHc-CcEEEeccC----CCCHHHHHHHHHHhc-C---HHHHHHHHHHHHHHh
Q psy14941 383 GIPVFGDQWANIKKLESL-KAGKLLPYL----EITEETVSDALKIVL-S---PEYKENAEDLGTRFR 440 (513)
Q Consensus 383 ~~P~~~DQ~~na~~~~~~-G~G~~l~~~----~~~~~~l~~ai~~ll-~---~~y~~~a~~~~~~~~ 440 (513)
++|+++||+.||+++++. |+|+.+..+ .++.++|.++++++| | +++|++|++++++.+
T Consensus 360 ~~P~~~DQ~~Na~~v~~~~g~Gv~v~~~~~~~~~~~e~v~~av~~vm~~~~~~~~r~~a~~~~~~a~ 426 (449)
T PLN02173 360 AMPQWTDQPMNAKYIQDVWKVGVRVKAEKESGIAKREEIEFSIKEVMEGEKSKEMKENAGKWRDLAV 426 (449)
T ss_pred ecCchhcchHHHHHHHHHhCceEEEeecccCCcccHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Confidence 999999999999999974 999888532 258999999999999 6 457899998888777
No 19
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=100.00 E-value=2.3e-43 Score=353.46 Aligned_cols=373 Identities=20% Similarity=0.267 Sum_probs=246.0
Q ss_pred ceEeEEcCCCCCChHHHHHHHHHHHHh-CCCcEEEEEeecC-Ccc------ccCCeEEEEecCcccchhhHHHHHhhchh
Q psy14941 27 SKILAIFPTPAKSHQIIFDTILVELYQ-RGHDLTVITQYPE-TLV------HYERMKVLDIKGTHTYNSTIEDIYELSAD 98 (513)
Q Consensus 27 ~kIL~~~p~~~~gH~~~~~~la~~L~~-rGH~Vt~~~~~~~-~~~------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 98 (513)
.+|+ ++|++++||++|++.||+.|+. +|+.|||+++... ... ...+++++.++ .....+.. ...+.
T Consensus 4 ~hvv-~~P~p~qGHi~P~l~La~~La~~~G~~vT~v~t~~~~~~~~~~~~~~~~~i~~~~i~-dglp~g~~----~~~~~ 77 (455)
T PLN02152 4 PHFL-LVTFPAQGHVNPSLRFARRLIKTTGTRVTFATCLSVIHRSMIPNHNNVENLSFLTFS-DGFDDGVI----SNTDD 77 (455)
T ss_pred cEEE-EecCcccccHHHHHHHHHHHhhCCCcEEEEEeccchhhhhhhccCCCCCCEEEEEcC-CCCCCccc----ccccc
Confidence 4787 8999999999999999999996 6999999998742 110 01246666654 11111110 00000
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCHhHHHHhcc---C-CCccEEEEccchhchHHhhhhccCCCEEEEeCCCCchhhhh--h
Q psy14941 99 SIKRIHINFIDQEIQVENIFLHENMKSIWNM---E-NKYDLIITEMFLTDAFLVIPYLYKVPYISIASSTLHPQHSE--R 172 (513)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~---~-~~~Dlvi~d~~~~~~~~~~a~~l~iP~i~~~~~~~~~~~~~--~ 172 (513)
....+.. . .. ...+.+.+.+++ . .++++||+|.+..++. ++|+++|||.+.+.+.+....... .
T Consensus 78 ~~~~~~~-~----~~----~~~~~l~~~l~~l~~~~~pv~ciV~D~~~~wa~-dvA~~lgIP~~~f~t~~a~~~~~~~~~ 147 (455)
T PLN02152 78 VQNRLVN-F----ER----NGDKALSDFIEANLNGDSPVTCLIYTILPNWAP-KVARRFHLPSVLLWIQPAFVFDIYYNY 147 (455)
T ss_pred HHHHHHH-H----HH----hccHHHHHHHHHhhccCCCceEEEECCccHhHH-HHHHHhCCCEEEEECccHHHHHHHHHh
Confidence 1111111 1 11 112344444431 1 3359999999988888 799999999999998886543321 1
Q ss_pred -cCCCCCCCccCcccC-CCCCCCCHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhCCCCCCHHhhh-cCccEEEEecc
Q psy14941 173 -LGLPDNPSYIPSYVS-AYTDHMSFTERLSNTFVGLYYKWYYDYKSHGAANRIIHKYFPEIPRIQDLL-NTCSLTLVNTH 249 (513)
Q Consensus 173 -~g~p~~~s~~P~~~~-~~~~~~~~~~r~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~l~~s~ 249 (513)
.+.+ .+..+|.... ...+-.++... .+. . ....+.+.+. ..... ..++.+++||+
T Consensus 148 ~~~~~-~~~~iPglp~l~~~dlp~~~~~-~~~-----~---------~~~~~~~~~~------~~~~~~~~~~~vlvNTf 205 (455)
T PLN02152 148 STGNN-SVFEFPNLPSLEIRDLPSFLSP-SNT-----N---------KAAQAVYQEL------MEFLKEESNPKILVNTF 205 (455)
T ss_pred hccCC-CeeecCCCCCCchHHCchhhcC-CCC-----c---------hhHHHHHHHH------HHHhhhccCCEEEEeCh
Confidence 1111 1112332110 00011111100 000 0 0000000000 00011 12468999999
Q ss_pred CccCCC--ccCC-CceEEeCcccccC----C---C-----CCcHHHHHHhhcC-CCceEEEEeCcccccCCCCHHHHHHH
Q psy14941 250 HTINIA--RPLP-ANVVEIGGIHVKP----A---K-----KLNEEMERFLNES-HNGVIYFSMGSMLKTSSFPPDKFKAF 313 (513)
Q Consensus 250 ~~l~~~--~p~~-p~~~~vG~l~~~~----~---~-----~l~~~l~~~l~~~-~~~~v~vs~Gs~~~~~~~~~~~~~~~ 313 (513)
++||.. .-+. .++..|||+.... . . +-+.++.+|++++ .+++|||||||.. .++.++++++
T Consensus 206 ~eLE~~~~~~l~~~~v~~VGPL~~~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~---~l~~~q~~el 282 (455)
T PLN02152 206 DSLEPEFLTAIPNIEMVAVGPLLPAEIFTGSESGKDLSVRDQSSSYTLWLDSKTESSVIYVSFGTMV---ELSKKQIEEL 282 (455)
T ss_pred HHhhHHHHHhhhcCCEEEEcccCccccccccccCccccccccchHHHHHhhCCCCCceEEEEecccc---cCCHHHHHHH
Confidence 999975 1121 2589999996421 0 1 1234799999987 5799999999998 7999999999
Q ss_pred HHHHhcCCCeEEEEEcCC---------C------CCC-C---CCCCcEEEecCCCccccccCCCceEEeccCCcccHHHH
Q psy14941 314 LKAFSKIPQRVLWKFEDN---------D------TSI-F---KPYKNIRTSSWMPQRDIFAHPNMKLFISHGGLLGITEA 374 (513)
Q Consensus 314 ~~~~~~~~~~~i~~~~~~---------~------~~~-~---~~~~nv~~~~~~pq~~lL~h~~~~~~IthgG~~s~~Ea 374 (513)
+.+|+..+++|||++++. + +++ + . ++|..+.+|+||.++|+|+++++||||||+||++||
T Consensus 283 a~gL~~s~~~flWv~r~~~~~~~~~~~~~~~~~~~~~~f~e~~-~~~g~v~~W~PQ~~iL~h~~vg~fvtH~G~nS~~Ea 361 (455)
T PLN02152 283 ARALIEGKRPFLWVITDKLNREAKIEGEEETEIEKIAGFRHEL-EEVGMIVSWCSQIEVLRHRAVGCFVTHCGWSSSLES 361 (455)
T ss_pred HHHHHHcCCCeEEEEecCcccccccccccccccccchhHHHhc-cCCeEEEeeCCHHHHhCCcccceEEeeCCcccHHHH
Confidence 999999999999999741 0 011 1 3 578899999999999999999999999999999999
Q ss_pred HHcCcceEeeccccCcHHHHHHHHH-cCcEEEec--cC-CCCHHHHHHHHHHhc-CH--HHHHHHHHHHHHHhc
Q psy14941 375 VYEGIPVLGIPVFGDQWANIKKLES-LKAGKLLP--YL-EITEETVSDALKIVL-SP--EYKENAEDLGTRFRD 441 (513)
Q Consensus 375 l~~GvP~i~~P~~~DQ~~na~~~~~-~G~G~~l~--~~-~~~~~~l~~ai~~ll-~~--~y~~~a~~~~~~~~~ 441 (513)
+++|||||++|+++||+.||+++++ .|+|+.+. .. .++.++|.++|+++| |+ ++|+||++++++.++
T Consensus 362 ~~~GvP~l~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~~~e~l~~av~~vm~~~~~~~r~~a~~~~~~~~~ 435 (455)
T PLN02152 362 LVLGVPVVAFPMWSDQPANAKLLEEIWKTGVRVRENSEGLVERGEIRRCLEAVMEEKSVELRESAEKWKRLAIE 435 (455)
T ss_pred HHcCCCEEeccccccchHHHHHHHHHhCceEEeecCcCCcCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999997 45555553 33 359999999999999 65 489999888877664
No 20
>PLN02448 UDP-glycosyltransferase family protein
Probab=100.00 E-value=3e-43 Score=357.66 Aligned_cols=376 Identities=18% Similarity=0.245 Sum_probs=255.0
Q ss_pred hccCceEeEEcCCCCCChHHHHHHHHHHHHhC--CCcEEEEEeecCCcc-cc----CCeEEEEecCcccchhhHHHHHhh
Q psy14941 23 IQQCSKILAIFPTPAKSHQIIFDTILVELYQR--GHDLTVITQYPETLV-HY----ERMKVLDIKGTHTYNSTIEDIYEL 95 (513)
Q Consensus 23 ~~~~~kIL~~~p~~~~gH~~~~~~la~~L~~r--GH~Vt~~~~~~~~~~-~~----~~~~~i~~~~~~~~~~~~~~~~~~ 95 (513)
.....||+ ++|++++||++|++.||++|++| ||+||+++++..... .. .+++++.++.. .+.+... .
T Consensus 7 ~~~~~hVv-lvp~pa~GHi~P~l~LA~~L~~~~~G~~VT~~~t~~~~~~i~~~~~~~gi~fv~lp~~-~p~~~~~----~ 80 (459)
T PLN02448 7 PTTSCHVV-AMPYPGRGHINPMMNLCKLLASRKPDILITFVVTEEWLGLIGSDPKPDNIRFATIPNV-IPSELVR----A 80 (459)
T ss_pred CCCCcEEE-EECCcccccHHHHHHHHHHHHcCCCCcEEEEEeCCchHhHhhccCCCCCEEEEECCCC-CCCcccc----c
Confidence 34567998 89999999999999999999999 999999999764322 01 25777766520 1111100 0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhCCHhHHHHhcc-CCCccEEEEccchhchHHhhhhccCCCEEEEeCCCCchhhhh-hc
Q psy14941 96 SADSIKRIHINFIDQEIQVENIFLHENMKSIWNM-ENKYDLIITEMFLTDAFLVIPYLYKVPYISIASSTLHPQHSE-RL 173 (513)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~Dlvi~d~~~~~~~~~~a~~l~iP~i~~~~~~~~~~~~~-~~ 173 (513)
.+ ... +...... . ..+.+.+.++. ..++|+||+|.++.++. .+|+++|||.+.+++.+....... ..
T Consensus 81 ~~-~~~-----~~~~~~~--~--~~~~~~~~l~~~~~~~~~VI~D~~~~wa~-~vA~~lgIP~v~f~~~~a~~~~~~~~~ 149 (459)
T PLN02448 81 AD-FPG-----FLEAVMT--K--MEAPFEQLLDRLEPPVTAIVADTYLFWAV-GVGNRRNIPVASLWTMSATFFSVFYHF 149 (459)
T ss_pred cC-HHH-----HHHHHHH--H--hHHHHHHHHHhcCCCcEEEEECCccHHHH-HHHHHhCCCeEEEEhHHHHHHHHHHHh
Confidence 00 111 1111111 0 11234444441 13689999999988888 699999999999998876332211 11
Q ss_pred CC-------CCCC--------CccCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhCCCCCCHHhhh
Q psy14941 174 GL-------PDNP--------SYIPSYVSAYTDHMSFTERLSNTFVGLYYKWYYDYKSHGAANRIIHKYFPEIPRIQDLL 238 (513)
Q Consensus 174 g~-------p~~~--------s~~P~~~~~~~~~~~~~~r~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (513)
+. |... ..+|.. ..+...+ +...+ ... . ....+.+.+.+. ..
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~iPg~-----~~l~~~d-lp~~~--------~~~-~-~~~~~~~~~~~~-------~~ 206 (459)
T PLN02448 150 DLLPQNGHFPVELSESGEERVDYIPGL-----SSTRLSD-LPPIF--------HGN-S-RRVLKRILEAFS-------WV 206 (459)
T ss_pred hhhhhccCCCCccccccCCccccCCCC-----CCCChHH-Cchhh--------cCC-c-hHHHHHHHHHHh-------hc
Confidence 10 1110 011211 0011110 00000 000 0 000111111111 12
Q ss_pred cCccEEEEeccCccCCC-----cc-CCCceEEeCcccccC-----CC-----CCcHHHHHHhhcC-CCceEEEEeCcccc
Q psy14941 239 NTCSLTLVNTHHTINIA-----RP-LPANVVEIGGIHVKP-----AK-----KLNEEMERFLNES-HNGVIYFSMGSMLK 301 (513)
Q Consensus 239 ~~~~l~l~~s~~~l~~~-----~p-~~p~~~~vG~l~~~~-----~~-----~l~~~l~~~l~~~-~~~~v~vs~Gs~~~ 301 (513)
..++.+++||..+||.. +. ..+++..|||+.... .. ..+.++.+|++.. .+++|||||||..
T Consensus 207 ~~~~~vlvNTf~eLE~~~~~~l~~~~~~~~~~iGP~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~vvyvsfGs~~- 285 (459)
T PLN02448 207 PKAQYLLFTSFYELEAQAIDALKSKFPFPVYPIGPSIPYMELKDNSSSSNNEDNEPDYFQWLDSQPEGSVLYVSLGSFL- 285 (459)
T ss_pred ccCCEEEEccHHHhhHHHHHHHHhhcCCceEEecCcccccccCCCccccccccchhHHHHHHcCCCCCceEEEeecccc-
Confidence 34678999999998875 22 345789999986421 00 1124788999976 5789999999997
Q ss_pred cCCCCHHHHHHHHHHHhcCCCeEEEEEcCC--CCCCCCCCCcEEEecCCCccccccCCCceEEeccCCcccHHHHHHcCc
Q psy14941 302 TSSFPPDKFKAFLKAFSKIPQRVLWKFEDN--DTSIFKPYKNIRTSSWMPQRDIFAHPNMKLFISHGGLLGITEAVYEGI 379 (513)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~nv~~~~~~pq~~lL~h~~~~~~IthgG~~s~~Eal~~Gv 379 (513)
.++.+++++++.+|+..+.+|||++..+ .+.+.. ++|+.+.+|+||.++|.|+++++||||||+||++||+++||
T Consensus 286 --~~~~~~~~~~~~~l~~~~~~~lw~~~~~~~~~~~~~-~~~~~v~~w~pQ~~iL~h~~v~~fvtHgG~nS~~eal~~Gv 362 (459)
T PLN02448 286 --SVSSAQMDEIAAGLRDSGVRFLWVARGEASRLKEIC-GDMGLVVPWCDQLKVLCHSSVGGFWTHCGWNSTLEAVFAGV 362 (459)
T ss_pred --cCCHHHHHHHHHHHHhCCCCEEEEEcCchhhHhHhc-cCCEEEeccCCHHHHhccCccceEEecCchhHHHHHHHcCC
Confidence 5788999999999999999999987653 233312 46899999999999999999999999999999999999999
Q ss_pred ceEeeccccCcHHHHHHHHH-cCcEEEecc-----CCCCHHHHHHHHHHhc-CH-----HHHHHHHHHHHHHhcC
Q psy14941 380 PVLGIPVFGDQWANIKKLES-LKAGKLLPY-----LEITEETVSDALKIVL-SP-----EYKENAEDLGTRFRDR 442 (513)
Q Consensus 380 P~i~~P~~~DQ~~na~~~~~-~G~G~~l~~-----~~~~~~~l~~ai~~ll-~~-----~y~~~a~~~~~~~~~~ 442 (513)
|||++|+++||+.||+++++ +|+|+.+.. ..++.++|+++++++| ++ ++|+||++++++.++.
T Consensus 363 P~l~~P~~~DQ~~na~~v~~~~g~G~~~~~~~~~~~~~~~~~l~~av~~vl~~~~~~~~~~r~~a~~~~~~~~~a 437 (459)
T PLN02448 363 PMLTFPLFWDQPLNSKLIVEDWKIGWRVKREVGEETLVGREEIAELVKRFMDLESEEGKEMRRRAKELQEICRGA 437 (459)
T ss_pred CEEeccccccchhhHHHHHHHhCceEEEecccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999997 688888752 2469999999999999 74 7999999999987754
No 21
>PLN02167 UDP-glycosyltransferase family protein
Probab=100.00 E-value=2e-42 Score=352.41 Aligned_cols=376 Identities=15% Similarity=0.254 Sum_probs=244.5
Q ss_pred CceEeEEcCCCCCChHHHHHHHHHHHHhCCCc---EEEEEeecCCc--------c---ccCCeEEEEecCcccchhhHHH
Q psy14941 26 CSKILAIFPTPAKSHQIIFDTILVELYQRGHD---LTVITQYPETL--------V---HYERMKVLDIKGTHTYNSTIED 91 (513)
Q Consensus 26 ~~kIL~~~p~~~~gH~~~~~~la~~L~~rGH~---Vt~~~~~~~~~--------~---~~~~~~~i~~~~~~~~~~~~~~ 91 (513)
..+|+ ++|++++||++|++.||+.|+.+|.. ||++++..... . ...+++++.+|........ +
T Consensus 3 ~~hVv-~~PfpaqGHi~P~l~LAk~La~~G~~~t~vt~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~p~~~-~- 79 (475)
T PLN02167 3 EAELI-FVPFPSTGHILVTIEFAKRLINLDRRIHTITILYWSLPFAPQADAFLKSLIASEPRIRLVTLPEVQDPPPM-E- 79 (475)
T ss_pred ccEEE-EeCChhhhhHHHHHHHHHHHHhCCCCeEEEEEEECCCCcchhhhHHHhhcccCCCCeEEEECCCCCCCccc-c-
Confidence 35787 99999999999999999999999944 55555321100 0 0124677777632211100 0
Q ss_pred HHhhchhHHHHHHHHHHHHHHHHHHHhCCHhHHHHhcc--C--C-CccEEEEccchhchHHhhhhccCCCEEEEeCCCCc
Q psy14941 92 IYELSADSIKRIHINFIDQEIQVENIFLHENMKSIWNM--E--N-KYDLIITEMFLTDAFLVIPYLYKVPYISIASSTLH 166 (513)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~--~-~~Dlvi~d~~~~~~~~~~a~~l~iP~i~~~~~~~~ 166 (513)
.........+.. .... +...+ .+.+.+++.. . . ++++||+|.++.|.. ++|+++|||.+.+.+++..
T Consensus 80 --~~~~~~~~~~~~-~~~~---~~~~l-~~~l~~l~~~~~~~~~~pv~cvV~D~f~~Wa~-dVA~elgIP~v~F~t~~A~ 151 (475)
T PLN02167 80 --LFVKASEAYILE-FVKK---MVPLV-RDALSTLVSSRDESDSVRVAGLVLDFFCVPLI-DVGNEFNLPSYIFLTCNAG 151 (475)
T ss_pred --ccccchHHHHHH-HHHH---HHHHH-HHHHHHHHhhccccCCCCeEEEEECCccHHHH-HHHHHhCCCEEEEECccHH
Confidence 000000001111 1111 11111 1112222211 1 1 359999999998888 7999999999999998864
Q ss_pred hhhhhh-c----CC-CCC--------CCccCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhCCCCC
Q psy14941 167 PQHSER-L----GL-PDN--------PSYIPSYVSAYTDHMSFTERLSNTFVGLYYKWYYDYKSHGAANRIIHKYFPEIP 232 (513)
Q Consensus 167 ~~~~~~-~----g~-p~~--------~s~~P~~~~~~~~~~~~~~r~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (513)
...... . +. +.. +-.+|.. ..++...+.. ..+. .. .... .+.+.+
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iPgl----~~~l~~~dlp-~~~~---~~--------~~~~-~~~~~~---- 210 (475)
T PLN02167 152 FLGMMKYLPERHRKTASEFDLSSGEEELPIPGF----VNSVPTKVLP-PGLF---MK--------ESYE-AWVEIA---- 210 (475)
T ss_pred HHHHHHHHHHhccccccccccCCCCCeeECCCC----CCCCChhhCc-hhhh---Cc--------chHH-HHHHHH----
Confidence 432111 1 10 100 0011211 0011111100 0000 00 0000 000100
Q ss_pred CHHhhhcCccEEEEeccCccCCC-----cc---CCCceEEeCcccccCC---CCCc----HHHHHHhhcC-CCceEEEEe
Q psy14941 233 RIQDLLNTCSLTLVNTHHTINIA-----RP---LPANVVEIGGIHVKPA---KKLN----EEMERFLNES-HNGVIYFSM 296 (513)
Q Consensus 233 ~~~~~~~~~~l~l~~s~~~l~~~-----~p---~~p~~~~vG~l~~~~~---~~l~----~~l~~~l~~~-~~~~v~vs~ 296 (513)
+...+++.+++||+.+||.. +. ..|++..|||++.... ..++ +++.+|++.. .+++|||||
T Consensus 211 ---~~~~~a~~vlvNTf~eLE~~~~~~l~~~~~~~p~v~~vGpl~~~~~~~~~~~~~~~~~~~~~wld~~~~~svvyvsf 287 (475)
T PLN02167 211 ---ERFPEAKGILVNSFTELEPNAFDYFSRLPENYPPVYPVGPILSLKDRTSPNLDSSDRDRIMRWLDDQPESSVVFLCF 287 (475)
T ss_pred ---HhhcccCEeeeccHHHHHHHHHHHHHhhcccCCeeEEeccccccccccCCCCCcchhHHHHHHHhcCCCCceEEEee
Confidence 11245788999999999974 11 1378999999986321 2222 5799999986 578999999
Q ss_pred CcccccCCCCHHHHHHHHHHHhcCCCeEEEEEcCCC------CCCCCCCC--------cEEEecCCCccccccCCCceEE
Q psy14941 297 GSMLKTSSFPPDKFKAFLKAFSKIPQRVLWKFEDND------TSIFKPYK--------NIRTSSWMPQRDIFAHPNMKLF 362 (513)
Q Consensus 297 Gs~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~------~~~~~~~~--------nv~~~~~~pq~~lL~h~~~~~~ 362 (513)
||.. .++.+++++++.+++..+++|||+++... ... + |+ +.++.+|+||.++|+|+++++|
T Consensus 288 GS~~---~~~~~~~~ela~~l~~~~~~flw~~~~~~~~~~~~~~~-l-p~~~~er~~~rg~v~~w~PQ~~iL~h~~vg~f 362 (475)
T PLN02167 288 GSLG---SLPAPQIKEIAQALELVGCRFLWSIRTNPAEYASPYEP-L-PEGFMDRVMGRGLVCGWAPQVEILAHKAIGGF 362 (475)
T ss_pred cccc---cCCHHHHHHHHHHHHhCCCcEEEEEecCcccccchhhh-C-ChHHHHHhccCeeeeccCCHHHHhcCcccCeE
Confidence 9986 67899999999999999999999987421 111 3 33 2478899999999999999999
Q ss_pred eccCCcccHHHHHHcCcceEeeccccCcHHHHHH-HHHcCcEEEeccC-------CCCHHHHHHHHHHhc-CH-HHHHHH
Q psy14941 363 ISHGGLLGITEAVYEGIPVLGIPVFGDQWANIKK-LESLKAGKLLPYL-------EITEETVSDALKIVL-SP-EYKENA 432 (513)
Q Consensus 363 IthgG~~s~~Eal~~GvP~i~~P~~~DQ~~na~~-~~~~G~G~~l~~~-------~~~~~~l~~ai~~ll-~~-~y~~~a 432 (513)
|||||+||++||+++|||||++|+++||+.||++ ++.+|+|+.+... .++.++|.++|+++| ++ .||++|
T Consensus 363 vtH~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~~~~~~~~~~~l~~av~~~m~~~~~~r~~a 442 (475)
T PLN02167 363 VSHCGWNSVLESLWFGVPIATWPMYAEQQLNAFTMVKELGLAVELRLDYVSAYGEIVKADEIAGAVRSLMDGEDVPRKKV 442 (475)
T ss_pred EeeCCcccHHHHHHcCCCEEeccccccchhhHHHHHHHhCeeEEeecccccccCCcccHHHHHHHHHHHhcCCHHHHHHH
Confidence 9999999999999999999999999999999976 6789999998632 469999999999999 54 899999
Q ss_pred HHHHHHHhc
Q psy14941 433 EDLGTRFRD 441 (513)
Q Consensus 433 ~~~~~~~~~ 441 (513)
+++++..++
T Consensus 443 ~~~~~~~~~ 451 (475)
T PLN02167 443 KEIAEAARK 451 (475)
T ss_pred HHHHHHHHH
Confidence 999988764
No 22
>PLN00164 glucosyltransferase; Provisional
Probab=100.00 E-value=4.2e-42 Score=349.06 Aligned_cols=387 Identities=15% Similarity=0.196 Sum_probs=254.9
Q ss_pred CceEeEEcCCCCCChHHHHHHHHHHHHhCC----CcEEEEEeecCCc-----cc-------cC--CeEEEEecCcccchh
Q psy14941 26 CSKILAIFPTPAKSHQIIFDTILVELYQRG----HDLTVITQYPETL-----VH-------YE--RMKVLDIKGTHTYNS 87 (513)
Q Consensus 26 ~~kIL~~~p~~~~gH~~~~~~la~~L~~rG----H~Vt~~~~~~~~~-----~~-------~~--~~~~i~~~~~~~~~~ 87 (513)
..+|+ ++|++++||++|++.||+.|+.+| +.||++++..... .. .. .+.+..+|......+
T Consensus 3 ~~HVV-lvPfpaqGHi~P~l~LAk~La~~g~~~~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~p~~ 81 (480)
T PLN00164 3 APTVV-LLPVWGSGHLMSMLEAGKRLLASSGGGALSLTVLVMPPPTPESASEVAAHVRREAASGLDIRFHHLPAVEPPTD 81 (480)
T ss_pred CCEEE-EeCCcchhHHHHHHHHHHHHHhCCCCCcEEEEEEEcCCCccchhHHHHHHHhhcccCCCCEEEEECCCCCCCCc
Confidence 34777 999999999999999999999997 7899999754211 00 01 366666653221111
Q ss_pred hHHHHHhhchhHHHHHHHHHHHHHHHHHHHhCCHhHHHHhcc-CCCccEEEEccchhchHHhhhhccCCCEEEEeCCCCc
Q psy14941 88 TIEDIYELSADSIKRIHINFIDQEIQVENIFLHENMKSIWNM-ENKYDLIITEMFLTDAFLVIPYLYKVPYISIASSTLH 166 (513)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~Dlvi~d~~~~~~~~~~a~~l~iP~i~~~~~~~~ 166 (513)
. + .. . .+ +..+ .. ...+.+.+.+.. ..++++||+|.+..|.. ++|+++|||.+.+++++..
T Consensus 82 ~-e---~~----~-~~---~~~~-~~----~~~~~l~~~L~~l~~pv~cIV~D~f~~Wa~-dVA~elgIP~v~F~t~sA~ 143 (480)
T PLN00164 82 A-A---GV----E-EF---ISRY-IQ----LHAPHVRAAIAGLSCPVAALVVDFFCTPLL-DVARELAVPAYVYFTSTAA 143 (480)
T ss_pred c-c---cH----H-HH---HHHH-HH----hhhHHHHHHHHhcCCCceEEEECCcchhHH-HHHHHhCCCEEEEECccHH
Confidence 0 0 00 0 00 1000 11 112445555542 12469999999988887 7999999999999998865
Q ss_pred hhhhhh-c----CC-CCC-CC-----ccCcccC-CCCCCCCHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhCCCCCC
Q psy14941 167 PQHSER-L----GL-PDN-PS-----YIPSYVS-AYTDHMSFTERLSNTFVGLYYKWYYDYKSHGAANRIIHKYFPEIPR 233 (513)
Q Consensus 167 ~~~~~~-~----g~-p~~-~s-----~~P~~~~-~~~~~~~~~~r~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (513)
...... . +. +.+ +. .+|.... ...+-.++...-.+ +..... ...
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iPGlp~l~~~dlp~~~~~~~~----------------~~~~~~-~~~------ 200 (480)
T PLN00164 144 MLALMLRLPALDEEVAVEFEEMEGAVDVPGLPPVPASSLPAPVMDKKS----------------PNYAWF-VYH------ 200 (480)
T ss_pred HHHHHhhhhhhcccccCcccccCcceecCCCCCCChHHCCchhcCCCc----------------HHHHHH-HHH------
Confidence 433221 1 00 000 00 1221100 00000000000000 000000 000
Q ss_pred HHhhhcCccEEEEeccCccCCC-----ccC-------CCceEEeCcccccC--C--CCCcHHHHHHhhcC-CCceEEEEe
Q psy14941 234 IQDLLNTCSLTLVNTHHTINIA-----RPL-------PANVVEIGGIHVKP--A--KKLNEEMERFLNES-HNGVIYFSM 296 (513)
Q Consensus 234 ~~~~~~~~~l~l~~s~~~l~~~-----~p~-------~p~~~~vG~l~~~~--~--~~l~~~l~~~l~~~-~~~~v~vs~ 296 (513)
. +....++.+++||+.+||.. +.. .|++..|||+.... + ...++++.+|+++. .+++|||||
T Consensus 201 ~-~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~~~~~~~~~v~~vGPl~~~~~~~~~~~~~~~~~~wLd~~~~~svvyvsf 279 (480)
T PLN00164 201 G-RRFMEAAGIIVNTAAELEPGVLAAIADGRCTPGRPAPTVYPIGPVISLAFTPPAEQPPHECVRWLDAQPPASVVFLCF 279 (480)
T ss_pred H-HhhhhcCEEEEechHHhhHHHHHHHHhccccccCCCCceEEeCCCccccccCCCccchHHHHHHHHhCCCCceEEEEe
Confidence 0 11244788999999999874 111 26799999997421 1 22356799999987 678999999
Q ss_pred CcccccCCCCHHHHHHHHHHHhcCCCeEEEEEcCCC-----------CCCCCCCC---------cEEEecCCCccccccC
Q psy14941 297 GSMLKTSSFPPDKFKAFLKAFSKIPQRVLWKFEDND-----------TSIFKPYK---------NIRTSSWMPQRDIFAH 356 (513)
Q Consensus 297 Gs~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-----------~~~~~~~~---------nv~~~~~~pq~~lL~h 356 (513)
||.. .++.+++++++.+++..+.+|||+++... ..+.+ |+ ++.+.+|+||.++|+|
T Consensus 280 GS~~---~~~~~q~~ela~gL~~s~~~flWv~~~~~~~~~~~~~~~~~~~~l-p~~~~~~~~~~g~~v~~w~PQ~~iL~h 355 (480)
T PLN00164 280 GSMG---FFDAPQVREIAAGLERSGHRFLWVLRGPPAAGSRHPTDADLDELL-PEGFLERTKGRGLVWPTWAPQKEILAH 355 (480)
T ss_pred cccc---cCCHHHHHHHHHHHHHcCCCEEEEEcCCcccccccccccchhhhC-ChHHHHHhcCCCeEEeecCCHHHHhcC
Confidence 9986 68899999999999999999999997421 01112 33 3777899999999999
Q ss_pred CCceEEeccCCcccHHHHHHcCcceEeeccccCcHHHHHHHH-HcCcEEEeccC-----CCCHHHHHHHHHHhc-CHH--
Q psy14941 357 PNMKLFISHGGLLGITEAVYEGIPVLGIPVFGDQWANIKKLE-SLKAGKLLPYL-----EITEETVSDALKIVL-SPE-- 427 (513)
Q Consensus 357 ~~~~~~IthgG~~s~~Eal~~GvP~i~~P~~~DQ~~na~~~~-~~G~G~~l~~~-----~~~~~~l~~ai~~ll-~~~-- 427 (513)
+.+.+||||||+||++||+++|||||++|+++||+.||++++ .+|+|+.+..+ .++.++|.++|+++| |++
T Consensus 356 ~~vg~fvtH~GwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvG~~~~~~~~~~~~~~~e~l~~av~~vm~~~~~~ 435 (480)
T PLN00164 356 AAVGGFVTHCGWNSVLESLWHGVPMAPWPLYAEQHLNAFELVADMGVAVAMKVDRKRDNFVEAAELERAVRSLMGGGEEE 435 (480)
T ss_pred cccCeEEeecccchHHHHHHcCCCEEeCCccccchhHHHHHHHHhCeEEEeccccccCCcCcHHHHHHHHHHHhcCCchh
Confidence 999999999999999999999999999999999999998875 58999998532 368999999999999 743
Q ss_pred ---HHHHHHHHHHHHhcCCC---ChHHHHHHHHHHHHH
Q psy14941 428 ---YKENAEDLGTRFRDRPQ---SPLEVAIYWIEYVIK 459 (513)
Q Consensus 428 ---y~~~a~~~~~~~~~~~~---~~~~~a~~~ie~~~~ 459 (513)
+|++|++++++.++.-. ++.....+.|+.+.+
T Consensus 436 ~~~~r~~a~~~~~~~~~a~~~gGSS~~~l~~~v~~~~~ 473 (480)
T PLN00164 436 GRKAREKAAEMKAACRKAVEEGGSSYAALQRLAREIRH 473 (480)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHh
Confidence 68889888887765321 233344444454433
No 23
>PLN02534 UDP-glycosyltransferase
Probab=100.00 E-value=1.8e-42 Score=349.71 Aligned_cols=401 Identities=18% Similarity=0.250 Sum_probs=261.5
Q ss_pred CceEeEEcCCCCCChHHHHHHHHHHHHhCCCcEEEEEeecCCcc-c-------c--CCeEEEEecCcccchhhHHHHHhh
Q psy14941 26 CSKILAIFPTPAKSHQIIFDTILVELYQRGHDLTVITQYPETLV-H-------Y--ERMKVLDIKGTHTYNSTIEDIYEL 95 (513)
Q Consensus 26 ~~kIL~~~p~~~~gH~~~~~~la~~L~~rGH~Vt~~~~~~~~~~-~-------~--~~~~~i~~~~~~~~~~~~~~~~~~ 95 (513)
..+|+ ++|++++||++|++.||+.|+.+|+.||+++++..... . . ..++++.++.+....++.......
T Consensus 8 ~~Hvv-~vPfpaqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~~~~~~~~i~~~~lp~p~~~dglp~~~~~~ 86 (491)
T PLN02534 8 QLHFV-LIPLMAQGHMIPMIDMARLLAERGVIVSLVTTPQNASRFAKTIDRARESGLPIRLVQIPFPCKEVGLPIGCENL 86 (491)
T ss_pred CCEEE-EECCCCcchHHHHHHHHHHHHhCCCeEEEEECCCcHHHHhhhhhhccccCCCeEEEEcCCCCccCCCCCCcccc
Confidence 35887 99999999999999999999999999999998654211 0 0 126777776432111111110100
Q ss_pred chhHH-HHHHHHHHHHHHHHHHHhCCHhHHHHhcc-CCCccEEEEccchhchHHhhhhccCCCEEEEeCCCCchhhhh--
Q psy14941 96 SADSI-KRIHINFIDQEIQVENIFLHENMKSIWNM-ENKYDLIITEMFLTDAFLVIPYLYKVPYISIASSTLHPQHSE-- 171 (513)
Q Consensus 96 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~Dlvi~d~~~~~~~~~~a~~l~iP~i~~~~~~~~~~~~~-- 171 (513)
.+... ..... +... .. ...+.+.++|+. ..++|+||+|.++.|+. ++|+.+|||.+.+++.+.......
T Consensus 87 ~~~~~~~~~~~-~~~~---~~--~l~~~l~~lL~~~~~pp~cIV~D~f~~Wa~-dVA~~lgIP~v~F~t~~a~~~~~~~~ 159 (491)
T PLN02534 87 DTLPSRDLLRK-FYDA---VD--KLQQPLERFLEQAKPPPSCIISDKCLSWTS-KTAQRFNIPRIVFHGMCCFSLLSSHN 159 (491)
T ss_pred ccCCcHHHHHH-HHHH---HH--HhHHHHHHHHHhcCCCCcEEEECCccHHHH-HHHHHhCCCeEEEecchHHHHHHHHH
Confidence 00000 00101 1111 11 112455666652 24689999999988888 799999999999998776544321
Q ss_pred -hcCCC---CCC----CccCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhCCCCCCHHhhhcCccE
Q psy14941 172 -RLGLP---DNP----SYIPSYVSAYTDHMSFTERLSNTFVGLYYKWYYDYKSHGAANRIIHKYFPEIPRIQDLLNTCSL 243 (513)
Q Consensus 172 -~~g~p---~~~----s~~P~~~~~~~~~~~~~~r~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 243 (513)
....+ .+. ..+|..... ..+...+ +...+ .. .+..+...+. +.+....++.
T Consensus 160 ~~~~~~~~~~~~~~~~~~iPg~p~~--~~l~~~d-lp~~~--------~~---~~~~~~~~~~-------~~~~~~~a~~ 218 (491)
T PLN02534 160 IRLHNAHLSVSSDSEPFVVPGMPQS--IEITRAQ-LPGAF--------VS---LPDLDDVRNK-------MREAESTAFG 218 (491)
T ss_pred HHHhcccccCCCCCceeecCCCCcc--ccccHHH-CChhh--------cC---cccHHHHHHH-------HHhhcccCCE
Confidence 01000 000 011211000 0000000 00000 00 0001111111 1112234678
Q ss_pred EEEeccCccCCC-----cc-CCCceEEeCcccccCC--------C---C-CcHHHHHHhhcC-CCceEEEEeCcccccCC
Q psy14941 244 TLVNTHHTINIA-----RP-LPANVVEIGGIHVKPA--------K---K-LNEEMERFLNES-HNGVIYFSMGSMLKTSS 304 (513)
Q Consensus 244 ~l~~s~~~l~~~-----~p-~~p~~~~vG~l~~~~~--------~---~-l~~~l~~~l~~~-~~~~v~vs~Gs~~~~~~ 304 (513)
+++||+.+||.. +. ..+++..|||+..... . . -.+++.+||++. ++++|||||||.. .
T Consensus 219 vlvNTf~eLE~~~l~~l~~~~~~~v~~VGPL~~~~~~~~~~~~~~~~~~~~~~~cl~wLd~~~~~sVvyvsfGS~~---~ 295 (491)
T PLN02534 219 VVVNSFNELEHGCAEAYEKAIKKKVWCVGPVSLCNKRNLDKFERGNKASIDETQCLEWLDSMKPRSVIYACLGSLC---R 295 (491)
T ss_pred EEEecHHHhhHHHHHHHHhhcCCcEEEECcccccccccccccccCCccccchHHHHHHHhcCCCCceEEEEecccc---c
Confidence 999999999964 22 3367999999964210 0 1 124688999987 5799999999997 6
Q ss_pred CCHHHHHHHHHHHhcCCCeEEEEEcCC---------CCCC-C----CCCCcEEEecCCCccccccCCCceEEeccCCccc
Q psy14941 305 FPPDKFKAFLKAFSKIPQRVLWKFEDN---------DTSI-F----KPYKNIRTSSWMPQRDIFAHPNMKLFISHGGLLG 370 (513)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~i~~~~~~---------~~~~-~----~~~~nv~~~~~~pq~~lL~h~~~~~~IthgG~~s 370 (513)
++.+++.+++.+|+..+++|||+++.+ .+++ + . +.|+++.+|+||.++|.|+++++||||||+||
T Consensus 296 ~~~~q~~e~a~gl~~~~~~flW~~r~~~~~~~~~~~~~p~gf~~~~~-~~g~~v~~w~pq~~iL~h~~v~~fvtH~G~ns 374 (491)
T PLN02534 296 LVPSQLIELGLGLEASKKPFIWVIKTGEKHSELEEWLVKENFEERIK-GRGLLIKGWAPQVLILSHPAIGGFLTHCGWNS 374 (491)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEEecCccccchhhhcCchhhHHhhc-cCCeeccCCCCHHHHhcCCccceEEecCccHH
Confidence 899999999999999999999999842 1211 1 2 57888899999999999999999999999999
Q ss_pred HHHHHHcCcceEeeccccCcHHHHHHHH-HcCcEEEecc---------C----CCCHHHHHHHHHHhc-C-----HHHHH
Q psy14941 371 ITEAVYEGIPVLGIPVFGDQWANIKKLE-SLKAGKLLPY---------L----EITEETVSDALKIVL-S-----PEYKE 430 (513)
Q Consensus 371 ~~Eal~~GvP~i~~P~~~DQ~~na~~~~-~~G~G~~l~~---------~----~~~~~~l~~ai~~ll-~-----~~y~~ 430 (513)
++||+++|||||++|+++||+.||++++ .+|+|+.+.. + .++.+++.++|+++| + .++|+
T Consensus 375 ~~ea~~~GvP~v~~P~~~dq~~na~~~~e~~~vGv~~~~~~~~~~~~~~~~~~~v~~eev~~~v~~~m~~~~eeg~~~R~ 454 (491)
T PLN02534 375 TIEGICSGVPMITWPLFAEQFLNEKLIVEVLRIGVRVGVEVPVRWGDEERVGVLVKKDEVEKAVKTLMDDGGEEGERRRR 454 (491)
T ss_pred HHHHHHcCCCEEeccccccHHHHHHHHHHhhcceEEecccccccccccccccCccCHHHHHHHHHHHhccccccHHHHHH
Confidence 9999999999999999999999999987 5899987731 1 278999999999999 4 47999
Q ss_pred HHHHHHHHHhcCCC---ChHHHHHHHHHHHHH
Q psy14941 431 NAEDLGTRFRDRPQ---SPLEVAIYWIEYVIK 459 (513)
Q Consensus 431 ~a~~~~~~~~~~~~---~~~~~a~~~ie~~~~ 459 (513)
||++++++.++.-. ++..+....|+.+.+
T Consensus 455 rA~elk~~a~~Av~~GGSS~~nl~~fv~~i~~ 486 (491)
T PLN02534 455 RAQELGVMARKAMELGGSSHINLSILIQDVLK 486 (491)
T ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 99999988764321 233444445555543
No 24
>PLN03015 UDP-glucosyl transferase
Probab=100.00 E-value=3.3e-42 Score=344.32 Aligned_cols=370 Identities=17% Similarity=0.228 Sum_probs=250.1
Q ss_pred ceEeEEcCCCCCChHHHHHHHHHHHHhC-CCcEEEEEeecCCcc-------cc--C--CeEEEEecCcccchhh-HHHHH
Q psy14941 27 SKILAIFPTPAKSHQIIFDTILVELYQR-GHDLTVITQYPETLV-------HY--E--RMKVLDIKGTHTYNST-IEDIY 93 (513)
Q Consensus 27 ~kIL~~~p~~~~gH~~~~~~la~~L~~r-GH~Vt~~~~~~~~~~-------~~--~--~~~~i~~~~~~~~~~~-~~~~~ 93 (513)
.+|+ ++|+|++||++|++.||+.|+.+ |..||++++...... .. . +++++.+|.++. .+. ..+
T Consensus 4 pHvv-l~P~p~qGHi~P~l~LAk~La~~~g~~vT~v~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~-~~l~~~~-- 79 (470)
T PLN03015 4 PHAL-LVASPGLGHLIPILELGNRLSSVLNIHVTILAVTSGSSSPTETEAIHAAAARTTCQITEIPSVDV-DNLVEPD-- 79 (470)
T ss_pred cEEE-EECCcccccHHHHHHHHHHHHhCCCCeEEEEECCCchhhhccccccccccCCCceEEEECCCCcc-ccCCCCC--
Confidence 4787 89999999999999999999987 999999987542210 00 1 366666653321 111 000
Q ss_pred hhchhHHHHHHHHHHHHHHHHHHHhCCHhHHHHhcc-CCCccEEEEccchhchHHhhhhccCCC-EEEEeCCCCchhh-h
Q psy14941 94 ELSADSIKRIHINFIDQEIQVENIFLHENMKSIWNM-ENKYDLIITEMFLTDAFLVIPYLYKVP-YISIASSTLHPQH-S 170 (513)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~Dlvi~d~~~~~~~~~~a~~l~iP-~i~~~~~~~~~~~-~ 170 (513)
.+ ....+.. . .. ...+.+.+.|++ ..++++||+|.++.++. ++|+++||| .+.+.++...... .
T Consensus 80 --~~-~~~~~~~-~------~~--~~~~~~~~~l~~l~~~~~ciV~D~f~~w~~-~vA~~lgIP~~~~f~~~~a~~~~~~ 146 (470)
T PLN03015 80 --AT-IFTKMVV-K------MR--AMKPAVRDAVKSMKRKPTVMIVDFFGTALM-SIADDVGVTAKYVYIPSHAWFLAVM 146 (470)
T ss_pred --cc-HHHHHHH-H------HH--hchHHHHHHHHhcCCCCeEEEEcCCcHHHH-HHHHHcCCCEEEEEcCHHHHHHHHH
Confidence 01 1111111 1 11 123456666652 13679999999998888 799999999 4666665543331 1
Q ss_pred hhc---CCCCCC--------CccCcccC-CCCCCCCHH-HHHHHHHHHHHHHHHHHhhchhHHHHHHHHhCCCCCCHHhh
Q psy14941 171 ERL---GLPDNP--------SYIPSYVS-AYTDHMSFT-ERLSNTFVGLYYKWYYDYKSHGAANRIIHKYFPEIPRIQDL 237 (513)
Q Consensus 171 ~~~---g~p~~~--------s~~P~~~~-~~~~~~~~~-~r~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (513)
..+ ..+... -.+|.... ...+-.++. ++- + .......+. .. .
T Consensus 147 ~~l~~~~~~~~~~~~~~~~~~~vPg~p~l~~~dlp~~~~~~~-~----------------~~~~~~~~~-------~~-~ 201 (470)
T PLN03015 147 VYLPVLDTVVEGEYVDIKEPLKIPGCKPVGPKELMETMLDRS-D----------------QQYKECVRS-------GL-E 201 (470)
T ss_pred HhhhhhhcccccccCCCCCeeeCCCCCCCChHHCCHhhcCCC-c----------------HHHHHHHHH-------HH-h
Confidence 111 101000 11222110 000000000 000 0 000011110 11 1
Q ss_pred hcCccEEEEeccCccCCC-----ccC-------CCceEEeCcccccC-CCCCcHHHHHHhhcC-CCceEEEEeCcccccC
Q psy14941 238 LNTCSLTLVNTHHTINIA-----RPL-------PANVVEIGGIHVKP-AKKLNEEMERFLNES-HNGVIYFSMGSMLKTS 303 (513)
Q Consensus 238 ~~~~~l~l~~s~~~l~~~-----~p~-------~p~~~~vG~l~~~~-~~~l~~~l~~~l~~~-~~~~v~vs~Gs~~~~~ 303 (513)
...++.+++||+.+||.. +.. .+++..|||+.... ....++++.+||++. .+++|||||||..
T Consensus 202 ~~~a~gvlvNTf~eLE~~~~~~l~~~~~~~~~~~~~v~~VGPl~~~~~~~~~~~~~~~WLd~~~~~sVvyvsFGS~~--- 278 (470)
T PLN03015 202 VPMSDGVLVNTWEELQGNTLAALREDMELNRVMKVPVYPIGPIVRTNVHVEKRNSIFEWLDKQGERSVVYVCLGSGG--- 278 (470)
T ss_pred cccCCEEEEechHHHhHHHHHHHHhhcccccccCCceEEecCCCCCcccccchHHHHHHHHhCCCCCEEEEECCcCC---
Confidence 345899999999999964 221 25699999997432 112245799999987 6899999999996
Q ss_pred CCCHHHHHHHHHHHhcCCCeEEEEEcCC------------CCCCCCCCCc---------EEEecCCCccccccCCCceEE
Q psy14941 304 SFPPDKFKAFLKAFSKIPQRVLWKFEDN------------DTSIFKPYKN---------IRTSSWMPQRDIFAHPNMKLF 362 (513)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~------------~~~~~~~~~n---------v~~~~~~pq~~lL~h~~~~~~ 362 (513)
.++.+++++++.+|+..+++|||+++.. +..+.+ |+| +.+.+|+||.++|+|+++++|
T Consensus 279 ~~~~~q~~ela~gl~~s~~~FlWv~r~~~~~~~~~~~~~~~~~~~l-p~~f~er~~~rGl~v~~W~PQ~~vL~h~~vg~f 357 (470)
T PLN03015 279 TLTFEQTVELAWGLELSGQRFVWVLRRPASYLGASSSDDDQVSASL-PEGFLDRTRGVGLVVTQWAPQVEILSHRSIGGF 357 (470)
T ss_pred cCCHHHHHHHHHHHHhCCCcEEEEEecCccccccccccccchhhcC-ChHHHHhhccCceEEEecCCHHHHhccCccCeE
Confidence 7999999999999999999999999631 111114 555 678899999999999999999
Q ss_pred eccCCcccHHHHHHcCcceEeeccccCcHHHHHHH-HHcCcEEEec----cCCCCHHHHHHHHHHhc-C-----HHHHHH
Q psy14941 363 ISHGGLLGITEAVYEGIPVLGIPVFGDQWANIKKL-ESLKAGKLLP----YLEITEETVSDALKIVL-S-----PEYKEN 431 (513)
Q Consensus 363 IthgG~~s~~Eal~~GvP~i~~P~~~DQ~~na~~~-~~~G~G~~l~----~~~~~~~~l~~ai~~ll-~-----~~y~~~ 431 (513)
|||||+||++||+++|||||++|+++||+.||+++ +..|+|+.+. ...++.+++.++|+++| + .+.|+|
T Consensus 358 vtH~GwnS~~Eai~~GvP~v~~P~~~DQ~~na~~~~~~~gvg~~~~~~~~~~~v~~e~i~~~v~~lm~~~~eeg~~~R~r 437 (470)
T PLN03015 358 LSHCGWSSVLESLTKGVPIVAWPLYAEQWMNATLLTEEIGVAVRTSELPSEKVIGREEVASLVRKIVAEEDEEGQKIRAK 437 (470)
T ss_pred EecCCchhHHHHHHcCCCEEecccccchHHHHHHHHHHhCeeEEecccccCCccCHHHHHHHHHHHHccCcccHHHHHHH
Confidence 99999999999999999999999999999999998 5799999995 23589999999999999 4 368999
Q ss_pred HHHHHHHHhcC
Q psy14941 432 AEDLGTRFRDR 442 (513)
Q Consensus 432 a~~~~~~~~~~ 442 (513)
|++++++.++.
T Consensus 438 a~~lk~~a~~A 448 (470)
T PLN03015 438 AEEVRVSSERA 448 (470)
T ss_pred HHHHHHHHHHH
Confidence 99998877643
No 25
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=100.00 E-value=2.4e-41 Score=342.83 Aligned_cols=389 Identities=18% Similarity=0.189 Sum_probs=259.0
Q ss_pred ceEeEEcCCCCCChHHHHHHHHHHHHhCCCcEEEEEeecCCcc-ccCCeEEEEecCcccchhhHHHHHhhc---hhHHHH
Q psy14941 27 SKILAIFPTPAKSHQIIFDTILVELYQRGHDLTVITQYPETLV-HYERMKVLDIKGTHTYNSTIEDIYELS---ADSIKR 102 (513)
Q Consensus 27 ~kIL~~~p~~~~gH~~~~~~la~~L~~rGH~Vt~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~---~~~~~~ 102 (513)
.||| +++.++.||++|+++||++|++|||+|+++++...+.. ...+++++.++.. ............ ......
T Consensus 1 mrIl-~~~~p~~GHv~P~l~la~~L~~rGh~V~~~t~~~~~~~v~~~G~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 77 (401)
T cd03784 1 MRVL-ITTIGSRGDVQPLVALAWALRAAGHEVRVATPPEFADLVEAAGLEFVPVGGD--PDELLASPERNAGLLLLGPGL 77 (401)
T ss_pred CeEE-EEeCCCcchHHHHHHHHHHHHHCCCeEEEeeCHhHHHHHHHcCCceeeCCCC--HHHHHhhhhhcccccccchHH
Confidence 4888 77889999999999999999999999999999765433 1345666555321 111101000000 000011
Q ss_pred HHHHHHHHHHH-HHHHhCCHhHHHHhccCCCccEEEEccchhchHHhhhhccCCCEEEEeCCCCchhhhhhcCCCCCCCc
Q psy14941 103 IHINFIDQEIQ-VENIFLHENMKSIWNMENKYDLIITEMFLTDAFLVIPYLYKVPYISIASSTLHPQHSERLGLPDNPSY 181 (513)
Q Consensus 103 ~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~~Dlvi~d~~~~~~~~~~a~~l~iP~i~~~~~~~~~~~~~~~g~p~~~s~ 181 (513)
... ....... +...+ +.+.+.++ ..++|+||+|.+...+. .+|+++|||++.+++++.... +.
T Consensus 78 ~~~-~~~~~~~~~~~~~--~~~~~~~~-~~~pDlvi~d~~~~~~~-~~A~~~giP~v~~~~~~~~~~-----------~~ 141 (401)
T cd03784 78 LLG-ALRLLRREAEAML--DDLVAAAR-DWGPDLVVADPLAFAGA-VAAEALGIPAVRLLLGPDTPT-----------SA 141 (401)
T ss_pred HHH-HHHHHHHHHHHHH--HHHHHHhc-ccCCCEEEeCcHHHHHH-HHHHHhCCCeEEeecccCCcc-----------cc
Confidence 111 1222223 34333 34555555 68999999998766665 599999999999988654321 11
Q ss_pred cCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhCCC-CCCHHhhhcCccEEEEeccCccCCCcc-CC
Q psy14941 182 IPSYVSAYTDHMSFTERLSNTFVGLYYKWYYDYKSHGAANRIIHKYFPE-IPRIQDLLNTCSLTLVNTHHTINIARP-LP 259 (513)
Q Consensus 182 ~P~~~~~~~~~~~~~~r~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~l~~s~~~l~~~~p-~~ 259 (513)
.|... .+. ................. ....+..++.+|. .... .....+..+....+.+..+.+ .+
T Consensus 142 ~~~~~-------~~~---~~~~~~~~~~~~~~~~~-~~~~~~~~~~~gl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 208 (401)
T cd03784 142 FPPPL-------GRA---NLRLYALLEAELWQDLL-GAWLRARRRRLGLPPLSL--LDGSDVPELYGFSPAVLPPPPDWP 208 (401)
T ss_pred CCCcc-------chH---HHHHHHHHHHHHHHHHH-HHHHHHHHHhcCCCCCcc--cccCCCcEEEecCcccCCCCCCcc
Confidence 11111 111 11111111111111011 1223334455664 1111 111223344444444444433 45
Q ss_pred CceEEeCc-ccccC-CCCCcHHHHHHhhcCCCceEEEEeCcccccCCCCHHHHHHHHHHHhcCCCeEEEEEcCCCCC--C
Q psy14941 260 ANVVEIGG-IHVKP-AKKLNEEMERFLNESHNGVIYFSMGSMLKTSSFPPDKFKAFLKAFSKIPQRVLWKFEDNDTS--I 335 (513)
Q Consensus 260 p~~~~vG~-l~~~~-~~~l~~~l~~~l~~~~~~~v~vs~Gs~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~ 335 (513)
++..++|+ +...+ ....++++..|++. ++++|||++||... ..+.+..+.+++++...+.+++|..+..... .
T Consensus 209 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~v~v~~Gs~~~--~~~~~~~~~~~~a~~~~~~~~i~~~g~~~~~~~~ 285 (401)
T cd03784 209 RFDLVTGYGFRDVPYNGPPPPELWLFLAA-GRPPVYVGFGSMVV--RDPEALARLDVEAVATLGQRAILSLGWGGLGAED 285 (401)
T ss_pred ccCcEeCCCCCCCCCCCCCCHHHHHHHhC-CCCcEEEeCCCCcc--cCHHHHHHHHHHHHHHcCCeEEEEccCccccccC
Confidence 56667753 33222 33557788889875 68999999999873 3456788999999999888999998875432 3
Q ss_pred CCCCCcEEEecCCCccccccCCCceEEeccCCcccHHHHHHcCcceEeeccccCcHHHHHHHHHcCcEEEeccCCCCHHH
Q psy14941 336 FKPYKNIRTSSWMPQRDIFAHPNMKLFISHGGLLGITEAVYEGIPVLGIPVFGDQWANIKKLESLKAGKLLPYLEITEET 415 (513)
Q Consensus 336 ~~~~~nv~~~~~~pq~~lL~h~~~~~~IthgG~~s~~Eal~~GvP~i~~P~~~DQ~~na~~~~~~G~G~~l~~~~~~~~~ 415 (513)
. ++|+++.+|+||.++| ++|++||||||+||++||+++|||+|++|...||+.||+++++.|+|+.++..+++.++
T Consensus 286 -~-~~~v~~~~~~p~~~ll--~~~d~~I~hgG~~t~~eal~~GvP~v~~P~~~dQ~~~a~~~~~~G~g~~l~~~~~~~~~ 361 (401)
T cd03784 286 -L-PDNVRVVDFVPHDWLL--PRCAAVVHHGGAGTTAAALRAGVPQLVVPFFGDQPFWAARVAELGAGPALDPRELTAER 361 (401)
T ss_pred -C-CCceEEeCCCCHHHHh--hhhheeeecCCchhHHHHHHcCCCEEeeCCCCCcHHHHHHHHHCCCCCCCCcccCCHHH
Confidence 5 8899999999999999 77999999999999999999999999999999999999999999999999888889999
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q psy14941 416 VSDALKIVLSPEYKENAEDLGTRFRDRPQSPLEVAIYWIEY 456 (513)
Q Consensus 416 l~~ai~~ll~~~y~~~a~~~~~~~~~~~~~~~~~a~~~ie~ 456 (513)
|.+++++++++.+++++++.++.+++. ++.+.+++.||.
T Consensus 362 l~~al~~~l~~~~~~~~~~~~~~~~~~--~g~~~~~~~ie~ 400 (401)
T cd03784 362 LAAALRRLLDPPSRRRAAALLRRIREE--DGVPSAADVIER 400 (401)
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHhc--cCHHHHHHHHhh
Confidence 999999999445666777777777766 889999999885
No 26
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=100.00 E-value=3.8e-41 Score=339.72 Aligned_cols=380 Identities=19% Similarity=0.268 Sum_probs=261.8
Q ss_pred cCCCCCChHHHHHHHHHHHHhCCCcEEEEEeecCCcc-ccCCeEEEEecCcccchhhHHHHHhhchhHHHHHHHHHHHHH
Q psy14941 33 FPTPAKSHQIIFDTILVELYQRGHDLTVITQYPETLV-HYERMKVLDIKGTHTYNSTIEDIYELSADSIKRIHINFIDQE 111 (513)
Q Consensus 33 ~p~~~~gH~~~~~~la~~L~~rGH~Vt~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (513)
+.+++.||++|++.||++|++|||+|++++++..... ...++.++.++......+....... .. .. . .....
T Consensus 1 ~~~p~~Ghv~P~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~~G~~~~~~~~~~~~~~~~~~~~~-~~-~~----~-~~~~~ 73 (392)
T TIGR01426 1 FNIPAHGHVNPTLGVVEELVARGHRVTYATTEEFAERVEAAGAEFVLYGSALPPPDNPPENTE-EE-PI----D-IIEKL 73 (392)
T ss_pred CCCCccccccccHHHHHHHHhCCCeEEEEeCHHHHHHHHHcCCEEEecCCcCccccccccccC-cc-hH----H-HHHHH
Confidence 3578899999999999999999999999999776543 1345566555421100001000000 00 11 1 11122
Q ss_pred HH-HHHHhCCHhHHHHhccCCCccEEEEccchhchHHhhhhccCCCEEEEeCCCCchhhhhhcCCCCCCCccCcccCCCC
Q psy14941 112 IQ-VENIFLHENMKSIWNMENKYDLIITEMFLTDAFLVIPYLYKVPYISIASSTLHPQHSERLGLPDNPSYIPSYVSAYT 190 (513)
Q Consensus 112 ~~-~~~~~~~~~l~~~l~~~~~~Dlvi~d~~~~~~~~~~a~~l~iP~i~~~~~~~~~~~~~~~g~p~~~s~~P~~~~~~~ 190 (513)
.. +...+ +.+.+.++ ..+||+||+|.+..++. .+|+.+|||+|.+++...... . .| ...| ..+
T Consensus 74 ~~~~~~~~--~~l~~~~~-~~~pDlVi~d~~~~~~~-~~A~~~giP~v~~~~~~~~~~--~---~~---~~~~----~~~ 137 (392)
T TIGR01426 74 LDEAEDVL--PQLEEAYK-GDRPDLIVYDIASWTGR-LLARKWDVPVISSFPTFAANE--E---FE---EMVS----PAG 137 (392)
T ss_pred HHHHHHHH--HHHHHHhc-CCCCCEEEECCccHHHH-HHHHHhCCCEEEEehhhcccc--c---cc---cccc----ccc
Confidence 22 33333 34566666 67899999999876666 599999999998865432110 0 00 0001 000
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhCCC-CCCHHhhh-cCccEEEEeccCccCCCcc-CCCceEEeCc
Q psy14941 191 DHMSFTERLSNTFVGLYYKWYYDYKSHGAANRIIHKYFPE-IPRIQDLL-NTCSLTLVNTHHTINIARP-LPANVVEIGG 267 (513)
Q Consensus 191 ~~~~~~~r~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~l~l~~s~~~l~~~~p-~~p~~~~vG~ 267 (513)
..+....+..+. .... .....++. ++.+|. .+....+. ...+..+..+.+.++++++ ++++++++||
T Consensus 138 ~~~~~~~~~~~~-------~~~~--~~~~~~~~-r~~~gl~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~Gp 207 (392)
T TIGR01426 138 EGSAEEGAIAER-------GLAE--YVARLSAL-LEEHGITTPPVEFLAAPRRDLNLVYTPKAFQPAGETFDDSFTFVGP 207 (392)
T ss_pred hhhhhhhccccc-------hhHH--HHHHHHHH-HHHhCCCCCCHHHHhcCCcCcEEEeCChHhCCCccccCCCeEEECC
Confidence 000000000000 0000 01233433 444553 23333332 2345577788888887654 6789999999
Q ss_pred ccccCCCCCcHHHHHHhhcC-CCceEEEEeCcccccCCCCHHHHHHHHHHHhcCCCeEEEEEcCCC----CCCCCCCCcE
Q psy14941 268 IHVKPAKKLNEEMERFLNES-HNGVIYFSMGSMLKTSSFPPDKFKAFLKAFSKIPQRVLWKFEDND----TSIFKPYKNI 342 (513)
Q Consensus 268 l~~~~~~~l~~~l~~~l~~~-~~~~v~vs~Gs~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~~~~~~~nv 342 (513)
+...... ...|.... ++++||+|+||.. ....+.++.+++++.+.+.+++|..++.. +.+ . ++|+
T Consensus 208 ~~~~~~~-----~~~~~~~~~~~~~v~vs~Gs~~---~~~~~~~~~~~~al~~~~~~~i~~~g~~~~~~~~~~-~-~~~v 277 (392)
T TIGR01426 208 CIGDRKE-----DGSWERPGDGRPVVLISLGTVF---NNQPSFYRTCVEAFRDLDWHVVLSVGRGVDPADLGE-L-PPNV 277 (392)
T ss_pred CCCCccc-----cCCCCCCCCCCCEEEEecCccC---CCCHHHHHHHHHHHhcCCCeEEEEECCCCChhHhcc-C-CCCe
Confidence 7654321 11244433 7899999999985 23456889999999999999998886532 334 5 8899
Q ss_pred EEecCCCccccccCCCceEEeccCCcccHHHHHHcCcceEeeccccCcHHHHHHHHHcCcEEEeccCCCCHHHHHHHHHH
Q psy14941 343 RTSSWMPQRDIFAHPNMKLFISHGGLLGITEAVYEGIPVLGIPVFGDQWANIKKLESLKAGKLLPYLEITEETVSDALKI 422 (513)
Q Consensus 343 ~~~~~~pq~~lL~h~~~~~~IthgG~~s~~Eal~~GvP~i~~P~~~DQ~~na~~~~~~G~G~~l~~~~~~~~~l~~ai~~ 422 (513)
.+.+|+||.+++ ++++++|||||.||+.||+++|+|+|++|..+||+.||.++++.|+|+.+...+++.++|.++|++
T Consensus 278 ~~~~~~p~~~ll--~~~~~~I~hgG~~t~~Eal~~G~P~v~~p~~~dq~~~a~~l~~~g~g~~l~~~~~~~~~l~~ai~~ 355 (392)
T TIGR01426 278 EVRQWVPQLEIL--KKADAFITHGGMNSTMEALFNGVPMVAVPQGADQPMTARRIAELGLGRHLPPEEVTAEKLREAVLA 355 (392)
T ss_pred EEeCCCCHHHHH--hhCCEEEECCCchHHHHHHHhCCCEEecCCcccHHHHHHHHHHCCCEEEeccccCCHHHHHHHHHH
Confidence 999999999999 779999999999999999999999999999999999999999999999998888999999999999
Q ss_pred hc-CHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q psy14941 423 VL-SPEYKENAEDLGTRFRDRPQSPLEVAIYWIEYVIK 459 (513)
Q Consensus 423 ll-~~~y~~~a~~~~~~~~~~~~~~~~~a~~~ie~~~~ 459 (513)
++ |++|+++++++++.+++. ++.+.|+++||.+++
T Consensus 356 ~l~~~~~~~~~~~l~~~~~~~--~~~~~aa~~i~~~~~ 391 (392)
T TIGR01426 356 VLSDPRYAERLRKMRAEIREA--GGARRAADEIEGFLA 391 (392)
T ss_pred HhcCHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHhhc
Confidence 99 999999999999999977 789999999998765
No 27
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=100.00 E-value=2.7e-40 Score=329.29 Aligned_cols=388 Identities=22% Similarity=0.278 Sum_probs=261.6
Q ss_pred ceEeEEcCCCCCChHHHHHHHHHHHHhCCCcEEEEEeecCCccccCC--eEEEEecCcccchhhHHHHHhhchhHHHHHH
Q psy14941 27 SKILAIFPTPAKSHQIIFDTILVELYQRGHDLTVITQYPETLVHYER--MKVLDIKGTHTYNSTIEDIYELSADSIKRIH 104 (513)
Q Consensus 27 ~kIL~~~p~~~~gH~~~~~~la~~L~~rGH~Vt~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (513)
.||| ++..++.||++|+++|+++|.++||+|++++++...+. .+. +.+...+..+.............. .+..
T Consensus 2 mkil-~~~~~~~Ghv~p~~aL~~eL~~~gheV~~~~~~~~~~~-ve~ag~~f~~~~~~~~~~~~~~~~~~~~~-~~~~-- 76 (406)
T COG1819 2 MKIL-FVVCGAYGHVNPCLALGKELRRRGHEVVFASTGKFKEF-VEAAGLAFVAYPIRDSELATEDGKFAGVK-SFRR-- 76 (406)
T ss_pred ceEE-EEeccccccccchHHHHHHHHhcCCeEEEEeCHHHHHH-HHHhCcceeeccccCChhhhhhhhhhccc-hhHH--
Confidence 5898 55556699999999999999999999999999876554 333 335555533221111222222221 1110
Q ss_pred HHHHHHHHHHHHHhCCHhHHHHhccCCCccEEEEccchhchHHhhhhccCCCEEEEeCCCCchhhhhhcCCCCCCCc---
Q psy14941 105 INFIDQEIQVENIFLHENMKSIWNMENKYDLIITEMFLTDAFLVIPYLYKVPYISIASSTLHPQHSERLGLPDNPSY--- 181 (513)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~Dlvi~d~~~~~~~~~~a~~l~iP~i~~~~~~~~~~~~~~~g~p~~~s~--- 181 (513)
. .. .......++.+.+. +..+|+++.|.....+ + +++..++|++............. +.|.++..
T Consensus 77 ~-~~------~~~~~~~~~~~~~~-e~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 144 (406)
T COG1819 77 L-LQ------QFKKLIRELLELLR-ELEPDLVVDDARLSLG-L-AARLLGIPVVGINVAPYTPLPAA--GLPLPPVGIAG 144 (406)
T ss_pred H-hh------hhhhhhHHHHHHHH-hcchhhhhcchhhhhh-h-hhhhcccchhhhhhhhccCCccc--ccCcccccccc
Confidence 0 11 11122345556666 6789999998876554 3 88999999877665544322111 11111111
Q ss_pred -cCcccCCCCC-CCCHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhCC--C-CCCHHhhhcCccEEEEeccCccCCC-
Q psy14941 182 -IPSYVSAYTD-HMSFTERLSNTFVGLYYKWYYDYKSHGAANRIIHKYFP--E-IPRIQDLLNTCSLTLVNTHHTINIA- 255 (513)
Q Consensus 182 -~P~~~~~~~~-~~~~~~r~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~l~l~~s~~~l~~~- 255 (513)
.+........ .+.+.....+. ......+...+ . .+.+..+........+...+....|
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (406)
T COG1819 145 KLPIPLYPLPPRLVRPLIFARSW----------------LPKLVVRRNLGLELGLPNIRRLFASGPLLEIAYTDVLFPPG 208 (406)
T ss_pred cccccccccChhhccccccchhh----------------hhhhhhhhhccccccccchHHHhcCCCCccccccccccCCC
Confidence 0000000000 00000000000 00011111111 1 2223444444333333333333333
Q ss_pred ccCCCceEEeCcccccCCCCCcHHHHHHhhcCCCceEEEEeCcccccCCCCHHHHHHHHHHHhcCCCeEEEEEcCCC--C
Q psy14941 256 RPLPANVVEIGGIHVKPAKKLNEEMERFLNESHNGVIYFSMGSMLKTSSFPPDKFKAFLKAFSKIPQRVLWKFEDND--T 333 (513)
Q Consensus 256 ~p~~p~~~~vG~l~~~~~~~l~~~l~~~l~~~~~~~v~vs~Gs~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~ 333 (513)
++.+....++|++.......++.+ .. .++++||+|+||... . .++++.+++++..++.++|...++.. .
T Consensus 209 ~~~p~~~~~~~~~~~~~~~~~~~~----~~-~d~~~vyvslGt~~~---~-~~l~~~~~~a~~~l~~~vi~~~~~~~~~~ 279 (406)
T COG1819 209 DRLPFIGPYIGPLLGEAANELPYW----IP-ADRPIVYVSLGTVGN---A-VELLAIVLEALADLDVRVIVSLGGARDTL 279 (406)
T ss_pred CCCCCCcCccccccccccccCcch----hc-CCCCeEEEEcCCccc---H-HHHHHHHHHHHhcCCcEEEEecccccccc
Confidence 455666778888877654444332 23 379999999999973 2 89999999999999999999887722 3
Q ss_pred CCCCCCCcEEEecCCCccccccCCCceEEeccCCcccHHHHHHcCcceEeeccccCcHHHHHHHHHcCcEEEeccCCCCH
Q psy14941 334 SIFKPYKNIRTSSWMPQRDIFAHPNMKLFISHGGLLGITEAVYEGIPVLGIPVFGDQWANIKKLESLKAGKLLPYLEITE 413 (513)
Q Consensus 334 ~~~~~~~nv~~~~~~pq~~lL~h~~~~~~IthgG~~s~~Eal~~GvP~i~~P~~~DQ~~na~~~~~~G~G~~l~~~~~~~ 413 (513)
.+ . |.|+.+.+|+||..++ +++++||||||+||++||+++|||+|++|...||+.||.++++.|+|+.+..+.+++
T Consensus 280 ~~-~-p~n~~v~~~~p~~~~l--~~ad~vI~hGG~gtt~eaL~~gvP~vv~P~~~DQ~~nA~rve~~G~G~~l~~~~l~~ 355 (406)
T COG1819 280 VN-V-PDNVIVADYVPQLELL--PRADAVIHHGGAGTTSEALYAGVPLVVIPDGADQPLNAERVEELGAGIALPFEELTE 355 (406)
T ss_pred cc-C-CCceEEecCCCHHHHh--hhcCEEEecCCcchHHHHHHcCCCEEEecCCcchhHHHHHHHHcCCceecCcccCCH
Confidence 44 6 9999999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhc-CHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHhCC
Q psy14941 414 ETVSDALKIVL-SPEYKENAEDLGTRFRDRPQSPLEVAIYWIEYVIKYNG 462 (513)
Q Consensus 414 ~~l~~ai~~ll-~~~y~~~a~~~~~~~~~~~~~~~~~a~~~ie~~~~~~~ 462 (513)
+.+.++|+++| |+.|+++++++++.++.. .+.+.+++++|...+.+.
T Consensus 356 ~~l~~av~~vL~~~~~~~~~~~~~~~~~~~--~g~~~~a~~le~~~~~~~ 403 (406)
T COG1819 356 ERLRAAVNEVLADDSYRRAAERLAEEFKEE--DGPAKAADLLEEFAREKK 403 (406)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhhhc--ccHHHHHHHHHHHHhccc
Confidence 99999999999 999999999999999988 789999999999887754
No 28
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=99.93 E-value=1.8e-24 Score=212.23 Aligned_cols=312 Identities=22% Similarity=0.238 Sum_probs=194.5
Q ss_pred ceEeEEcCCCCCChHHHHHHHHHHHHhCCCcEEEEEeecCCccccCCeEEEEecCcccchhhHHHHHhhchhHHHHHHHH
Q psy14941 27 SKILAIFPTPAKSHQIIFDTILVELYQRGHDLTVITQYPETLVHYERMKVLDIKGTHTYNSTIEDIYELSADSIKRIHIN 106 (513)
Q Consensus 27 ~kIL~~~p~~~~gH~~~~~~la~~L~~rGH~Vt~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (513)
.||++.+..-|.||...+++||++| |||+|++++.........+.+....++........ ... +.+.....
T Consensus 1 MkIl~~v~~~G~GH~~R~~~la~~L--rg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~----~~~~~~~~- 71 (318)
T PF13528_consen 1 MKILFYVQGHGLGHASRCLALARAL--RGHEVTFITSGPAPEFLKPRFPVREIPGLGPIQEN--GRL----DRWKTVRN- 71 (318)
T ss_pred CEEEEEeCCCCcCHHHHHHHHHHHH--ccCceEEEEcCCcHHHhccccCEEEccCceEeccC--Ccc----chHHHHHH-
Confidence 4899888888999999999999999 69999999986543221222333333311111100 000 01111111
Q ss_pred HHHHHHHHHHHhCCHhHHHHhccCCCccEEEEccchhchHHhhhhccCCCEEEEeCCCCchhhhhhcCCCCCCCccCccc
Q psy14941 107 FIDQEIQVENIFLHENMKSIWNMENKYDLIITEMFLTDAFLVIPYLYKVPYISIASSTLHPQHSERLGLPDNPSYIPSYV 186 (513)
Q Consensus 107 ~~~~~~~~~~~~~~~~l~~~l~~~~~~Dlvi~d~~~~~~~~~~a~~l~iP~i~~~~~~~~~~~~~~~g~p~~~s~~P~~~ 186 (513)
.......... ....+.+.++ ..+||+||+|.... .. .+|+..|+|++.+++...... |.
T Consensus 72 ~~~~~~~~~~--~~~~~~~~l~-~~~pDlVIsD~~~~-~~-~aa~~~giP~i~i~~~~~~~~--------------~~-- 130 (318)
T PF13528_consen 72 NIRWLARLAR--RIRREIRWLR-EFRPDLVISDFYPL-AA-LAARRAGIPVIVISNQYWFLH--------------PN-- 130 (318)
T ss_pred HHHhhHHHHH--HHHHHHHHHH-hcCCCEEEEcChHH-HH-HHHHhcCCCEEEEEehHHccc--------------cc--
Confidence 1100000000 0123456666 68899999997644 34 388999999999887653210 00
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhCCCCCCHHhhhcCccEEEEeccCccCCCccCCCceEEeC
Q psy14941 187 SAYTDHMSFTERLSNTFVGLYYKWYYDYKSHGAANRIIHKYFPEIPRIQDLLNTCSLTLVNTHHTINIARPLPANVVEIG 266 (513)
Q Consensus 187 ~~~~~~~~~~~r~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~s~~~l~~~~p~~p~~~~vG 266 (513)
...... +..... .++.+.+.. ...++..+..+.. .+.+...++.++|
T Consensus 131 ~~~~~~----~~~~~~-----------------~~~~~~~~~---------~~~~~~~l~~~~~---~~~~~~~~~~~~~ 177 (318)
T PF13528_consen 131 FWLPWD----QDFGRL-----------------IERYIDRYH---------FPPADRRLALSFY---PPLPPFFRVPFVG 177 (318)
T ss_pred CCcchh----hhHHHH-----------------HHHhhhhcc---------CCcccceecCCcc---ccccccccccccC
Confidence 000000 111110 111111110 1223333332222 2222334466778
Q ss_pred cccccCCCCCcHHHHHHhhcCCCceEEEEeCcccccCCCCHHHHHHHHHHHhcCCC-eEEEEEcCCCCCCCCCCCcEEEe
Q psy14941 267 GIHVKPAKKLNEEMERFLNESHNGVIYFSMGSMLKTSSFPPDKFKAFLKAFSKIPQ-RVLWKFEDNDTSIFKPYKNIRTS 345 (513)
Q Consensus 267 ~l~~~~~~~l~~~l~~~l~~~~~~~v~vs~Gs~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~nv~~~ 345 (513)
++..+.....+ . .+++.|+|++|+... . .++++++.++. ++++. +...... . .+|+.+.
T Consensus 178 p~~~~~~~~~~-------~-~~~~~iLv~~gg~~~-----~----~~~~~l~~~~~~~~~v~-g~~~~~~-~-~~ni~~~ 237 (318)
T PF13528_consen 178 PIIRPEIRELP-------P-EDEPKILVYFGGGGP-----G----DLIEALKALPDYQFIVF-GPNAADP-R-PGNIHVR 237 (318)
T ss_pred chhcccccccC-------C-CCCCEEEEEeCCCcH-----H----HHHHHHHhCCCCeEEEE-cCCcccc-c-CCCEEEe
Confidence 77644321111 1 257889999999862 1 66788888874 66666 5443233 4 8999999
Q ss_pred cCC--CccccccCCCceEEeccCCcccHHHHHHcCcceEeecc--ccCcHHHHHHHHHcCcEEEeccCCCCHHHHHHHHH
Q psy14941 346 SWM--PQRDIFAHPNMKLFISHGGLLGITEAVYEGIPVLGIPV--FGDQWANIKKLESLKAGKLLPYLEITEETVSDALK 421 (513)
Q Consensus 346 ~~~--pq~~lL~h~~~~~~IthgG~~s~~Eal~~GvP~i~~P~--~~DQ~~na~~~~~~G~G~~l~~~~~~~~~l~~ai~ 421 (513)
++. +-.++| ..++++|||||.||++|+++.|+|+|++|. ..||..||+++++.|+|+.++.++++++.|.++|+
T Consensus 238 ~~~~~~~~~~m--~~ad~vIs~~G~~t~~Ea~~~g~P~l~ip~~~~~EQ~~~a~~l~~~G~~~~~~~~~~~~~~l~~~l~ 315 (318)
T PF13528_consen 238 PFSTPDFAELM--AAADLVISKGGYTTISEALALGKPALVIPRPGQDEQEYNARKLEELGLGIVLSQEDLTPERLAEFLE 315 (318)
T ss_pred ecChHHHHHHH--HhCCEEEECCCHHHHHHHHHcCCCEEEEeCCCCchHHHHHHHHHHCCCeEEcccccCCHHHHHHHHh
Confidence 987 344788 889999999999999999999999999999 78999999999999999999989999999999998
Q ss_pred Hh
Q psy14941 422 IV 423 (513)
Q Consensus 422 ~l 423 (513)
++
T Consensus 316 ~~ 317 (318)
T PF13528_consen 316 RL 317 (318)
T ss_pred cC
Confidence 75
No 29
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=99.93 E-value=3.8e-23 Score=203.70 Aligned_cols=329 Identities=18% Similarity=0.158 Sum_probs=200.7
Q ss_pred eEeEEcCCCCCChHHHHHHHHHHHHhCCCcEEEEEeecCCcc-c--cCCeEEEEecCcccchhhHHHHHhhchhHHHHHH
Q psy14941 28 KILAIFPTPAKSHQIIFDTILVELYQRGHDLTVITQYPETLV-H--YERMKVLDIKGTHTYNSTIEDIYELSADSIKRIH 104 (513)
Q Consensus 28 kIL~~~p~~~~gH~~~~~~la~~L~~rGH~Vt~~~~~~~~~~-~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (513)
||+ +...++.||++|.+++|++|.++||+|.+++....-+. . ..++.+..++....... ..+..+.
T Consensus 3 ~i~-~~~GGTGGHi~Pala~a~~l~~~g~~v~~vg~~~~~e~~l~~~~g~~~~~~~~~~l~~~----------~~~~~~~ 71 (352)
T PRK12446 3 KIV-FTGGGSAGHVTPNLAIIPYLKEDNWDISYIGSHQGIEKTIIEKENIPYYSISSGKLRRY----------FDLKNIK 71 (352)
T ss_pred eEE-EEcCCcHHHHHHHHHHHHHHHhCCCEEEEEECCCccccccCcccCCcEEEEeccCcCCC----------chHHHHH
Confidence 565 88888899999999999999999999999987443211 0 12344444431111000 0111111
Q ss_pred HHHHHHHHHHHHHhCCHhHHHHhccCCCccEEEEccchhc--hHHhhhhccCCCEEEEeCCCCchhhhhhcCCCCCCCcc
Q psy14941 105 INFIDQEIQVENIFLHENMKSIWNMENKYDLIITEMFLTD--AFLVIPYLYKVPYISIASSTLHPQHSERLGLPDNPSYI 182 (513)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~Dlvi~d~~~~~--~~~~~a~~l~iP~i~~~~~~~~~~~~~~~g~p~~~s~~ 182 (513)
. ..... . ..-+...+++ ..+||+|++...+.. .. .+|..+++|++.......
T Consensus 72 ~-~~~~~---~---~~~~~~~i~~-~~kPdvvi~~Ggy~s~p~~-~aa~~~~~p~~i~e~n~~----------------- 125 (352)
T PRK12446 72 D-PFLVM---K---GVMDAYVRIR-KLKPDVIFSKGGFVSVPVV-IGGWLNRVPVLLHESDMT----------------- 125 (352)
T ss_pred H-HHHHH---H---HHHHHHHHHH-hcCCCEEEecCchhhHHHH-HHHHHcCCCEEEECCCCC-----------------
Confidence 1 11110 1 0123345676 789999998764332 23 378889999877554321
Q ss_pred CcccCCCCCCCCHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhCCCCCCHHhhhcCccEEEEeccCccCCCccCC-Cc
Q psy14941 183 PSYVSAYTDHMSFTERLSNTFVGLYYKWYYDYKSHGAANRIIHKYFPEIPRIQDLLNTCSLTLVNTHHTINIARPLP-AN 261 (513)
Q Consensus 183 P~~~~~~~~~~~~~~r~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~s~~~l~~~~p~~-p~ 261 (513)
| +...| +..++ ++.+++. ++.-. ..++ .+
T Consensus 126 ~----------g~~nr------------------------~~~~~-------------a~~v~~~-f~~~~--~~~~~~k 155 (352)
T PRK12446 126 P----------GLANK------------------------IALRF-------------ASKIFVT-FEEAA--KHLPKEK 155 (352)
T ss_pred c----------cHHHH------------------------HHHHh-------------hCEEEEE-ccchh--hhCCCCC
Confidence 1 11112 11111 2223322 11100 0112 35
Q ss_pred eEEeCcccccCC-CCCcHHHHHHhhc-CCCceEEEEeCcccccCCCCHHHHHHHHHHHhcC--CCeEEEEEcCCCCCCCC
Q psy14941 262 VVEIGGIHVKPA-KKLNEEMERFLNE-SHNGVIYFSMGSMLKTSSFPPDKFKAFLKAFSKI--PQRVLWKFEDNDTSIFK 337 (513)
Q Consensus 262 ~~~vG~l~~~~~-~~l~~~l~~~l~~-~~~~~v~vs~Gs~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~ 337 (513)
++++|.-..+.- ....++..+.+.- .++++|+|.-||.. ....-+.+.+++..+ +.+++|.++.+++.+..
T Consensus 156 ~~~tG~Pvr~~~~~~~~~~~~~~~~l~~~~~~iLv~GGS~G-----a~~in~~~~~~l~~l~~~~~vv~~~G~~~~~~~~ 230 (352)
T PRK12446 156 VIYTGSPVREEVLKGNREKGLAFLGFSRKKPVITIMGGSLG-----AKKINETVREALPELLLKYQIVHLCGKGNLDDSL 230 (352)
T ss_pred eEEECCcCCcccccccchHHHHhcCCCCCCcEEEEECCccc-----hHHHHHHHHHHHHhhccCcEEEEEeCCchHHHHH
Confidence 677775432221 1112222222221 25789999999987 233333334444433 35899998876532200
Q ss_pred -CCCcEEEecCC-C-ccccccCCCceEEeccCCcccHHHHHHcCcceEeeccc-----cCcHHHHHHHHHcCcEEEeccC
Q psy14941 338 -PYKNIRTSSWM-P-QRDIFAHPNMKLFISHGGLLGITEAVYEGIPVLGIPVF-----GDQWANIKKLESLKAGKLLPYL 409 (513)
Q Consensus 338 -~~~nv~~~~~~-p-q~~lL~h~~~~~~IthgG~~s~~Eal~~GvP~i~~P~~-----~DQ~~na~~~~~~G~G~~l~~~ 409 (513)
..+++.+.+|+ + -.+++ ..+|++|||||.+|+.|++++|+|+|++|+. +||..||..+++.|+|..+..+
T Consensus 231 ~~~~~~~~~~f~~~~m~~~~--~~adlvIsr~G~~t~~E~~~~g~P~I~iP~~~~~~~~~Q~~Na~~l~~~g~~~~l~~~ 308 (352)
T PRK12446 231 QNKEGYRQFEYVHGELPDIL--AITDFVISRAGSNAIFEFLTLQKPMLLIPLSKFASRGDQILNAESFERQGYASVLYEE 308 (352)
T ss_pred hhcCCcEEecchhhhHHHHH--HhCCEEEECCChhHHHHHHHcCCCEEEEcCCCCCCCchHHHHHHHHHHCCCEEEcchh
Confidence 02455667787 4 34778 7899999999999999999999999999985 5899999999999999999888
Q ss_pred CCCHHHHHHHHHHhc-CH-HHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q psy14941 410 EITEETVSDALKIVL-SP-EYKENAEDLGTRFRDRPQSPLEVAIYWIEY 456 (513)
Q Consensus 410 ~~~~~~l~~ai~~ll-~~-~y~~~a~~~~~~~~~~~~~~~~~a~~~ie~ 456 (513)
+++++.|.+++.+++ |+ .|++++++ +... ++.+..+++++.
T Consensus 309 ~~~~~~l~~~l~~ll~~~~~~~~~~~~----~~~~--~aa~~i~~~i~~ 351 (352)
T PRK12446 309 DVTVNSLIKHVEELSHNNEKYKTALKK----YNGK--EAIQTIIDHISE 351 (352)
T ss_pred cCCHHHHHHHHHHHHcCHHHHHHHHHH----cCCC--CHHHHHHHHHHh
Confidence 999999999999999 86 55554443 3333 677777777653
No 30
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=99.90 E-value=4.7e-22 Score=194.67 Aligned_cols=309 Identities=19% Similarity=0.216 Sum_probs=175.8
Q ss_pred eEeEEcCCCCCChHHHHHHHHHHHHhCCCcEEEEEeecCCcc-ccCCeE-EEEecCcccchhhHHHHHhhchhHHHHHHH
Q psy14941 28 KILAIFPTPAKSHQIIFDTILVELYQRGHDLTVITQYPETLV-HYERMK-VLDIKGTHTYNSTIEDIYELSADSIKRIHI 105 (513)
Q Consensus 28 kIL~~~p~~~~gH~~~~~~la~~L~~rGH~Vt~~~~~~~~~~-~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (513)
|||+.....|.||+.+..++|++|.+ ||+|+++++...... ...++. +...+...... ... .. +.+..+..
T Consensus 1 ril~~~~g~G~GH~~r~~ala~~L~~-g~ev~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~--~~~--~~--~~~~~l~~ 73 (321)
T TIGR00661 1 KILYSVCGEGFGHTTRSVAIGEALKN-DYEVSYIASGRSKNYISKYGFKVFETFPGIKLKG--EDG--KV--NIVKTLRN 73 (321)
T ss_pred CEEEEEeccCccHHHHHHHHHHHHhC-CCeEEEEEcCCHHHhhhhhcCcceeccCCceEee--cCC--cC--cHHHHHHh
Confidence 68877787888999999999999999 999999986552221 011222 11111111100 000 00 01111110
Q ss_pred HHHHHHHHHHHHhCCHhHHHHhccCCCccEEEEccchhchHHhhhhccCCCEEEEeCCCCchhhhhhcCCCCCCCccCcc
Q psy14941 106 NFIDQEIQVENIFLHENMKSIWNMENKYDLIITEMFLTDAFLVIPYLYKVPYISIASSTLHPQHSERLGLPDNPSYIPSY 185 (513)
Q Consensus 106 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~Dlvi~d~~~~~~~~~~a~~l~iP~i~~~~~~~~~~~~~~~g~p~~~s~~P~~ 185 (513)
....... . -.+..++++ +.+||+||+|.- +.+.+ +|+.+|||++.+..+.... + |..
T Consensus 74 -~~~~~~~---~--~~~~~~~l~-~~~pDlVi~d~~-~~~~~-aA~~~~iP~i~i~~q~~~~-------------~-~~~ 130 (321)
T TIGR00661 74 -KEYSPKK---A--IRREINIIR-EYNPDLIISDFE-YSTVV-AAKLLKIPVICISNQNYTR-------------Y-PLK 130 (321)
T ss_pred -hccccHH---H--HHHHHHHHH-hcCCCEEEECCc-hHHHH-HHHhcCCCEEEEecchhhc-------------C-Ccc
Confidence 0000000 0 013345666 688999999955 44453 8999999999887632110 0 110
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhCCCCCCHHhhhcCccEEEEeccCccCCCccCCCceEEe
Q psy14941 186 VSAYTDHMSFTERLSNTFVGLYYKWYYDYKSHGAANRIIHKYFPEIPRIQDLLNTCSLTLVNTHHTINIARPLPANVVEI 265 (513)
Q Consensus 186 ~~~~~~~~~~~~r~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~s~~~l~~~~p~~p~~~~v 265 (513)
. .+..+. ..+.++.+. ...+..++...+.. .+..|.. +
T Consensus 131 ~-------~~~~~~--------------------~~~~~~~~~----------~~~~~~~~~~~~~~---~~~~p~~--~ 168 (321)
T TIGR00661 131 T-------DLIVYP--------------------TMAALRIFN----------ERCERFIVPDYPFP---YTICPKI--I 168 (321)
T ss_pred c-------chhHHH--------------------HHHHHHHhc----------cccceEeeecCCCC---CCCCccc--c
Confidence 0 011111 111111111 11122222211111 1111211 1
Q ss_pred CcccccCCCCCcHHHHHHhhcCCCceEEEEeCcccccCCCCHHHHHHHHHHHhcCCC-eEEEEEcCCC-CCCCCCCCcEE
Q psy14941 266 GGIHVKPAKKLNEEMERFLNESHNGVIYFSMGSMLKTSSFPPDKFKAFLKAFSKIPQ-RVLWKFEDND-TSIFKPYKNIR 343 (513)
Q Consensus 266 G~l~~~~~~~l~~~l~~~l~~~~~~~v~vs~Gs~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~-~~~~~~~~nv~ 343 (513)
+.+. . .....+..++.. ..++.|++.+|+.. .+.+++++.+.+. .+++. +.+. ... . ++|+.
T Consensus 169 ~~~~-~--~~~~~~~~~~~~-~~~~~iLv~~g~~~---------~~~l~~~l~~~~~~~~i~~-~~~~~~~~-~-~~~v~ 232 (321)
T TIGR00661 169 KNME-G--PLIRYDVDDVDN-YGEDYILVYIGFEY---------RYKILELLGKIANVKFVCY-SYEVAKNS-Y-NENVE 232 (321)
T ss_pred ccCC-C--cccchhhhcccc-CCCCcEEEECCcCC---------HHHHHHHHHhCCCeEEEEe-CCCCCccc-c-CCCEE
Confidence 1010 0 011122223322 24677888888754 2456777877775 55532 2222 223 5 78999
Q ss_pred EecCCCc--cccccCCCceEEeccCCcccHHHHHHcCcceEeecccc--CcHHHHHHHHHcCcEEEeccCCCCHHHHHHH
Q psy14941 344 TSSWMPQ--RDIFAHPNMKLFISHGGLLGITEAVYEGIPVLGIPVFG--DQWANIKKLESLKAGKLLPYLEITEETVSDA 419 (513)
Q Consensus 344 ~~~~~pq--~~lL~h~~~~~~IthgG~~s~~Eal~~GvP~i~~P~~~--DQ~~na~~~~~~G~G~~l~~~~~~~~~l~~a 419 (513)
+.+|.|+ .++| +.|+++|||||.+|++||+++|+|++++|..+ ||..||+.++++|+|+.++..++ ++.++
T Consensus 233 ~~~~~~~~~~~~l--~~ad~vI~~~G~~t~~Ea~~~g~P~l~ip~~~~~eQ~~na~~l~~~g~~~~l~~~~~---~~~~~ 307 (321)
T TIGR00661 233 IRRITTDNFKELI--KNAELVITHGGFSLISEALSLGKPLIVIPDLGQFEQGNNAVKLEDLGCGIALEYKEL---RLLEA 307 (321)
T ss_pred EEECChHHHHHHH--HhCCEEEECCChHHHHHHHHcCCCEEEEcCCCcccHHHHHHHHHHCCCEEEcChhhH---HHHHH
Confidence 9999982 3556 99999999999999999999999999999865 89999999999999999986665 66677
Q ss_pred HHHhc-CHHHH
Q psy14941 420 LKIVL-SPEYK 429 (513)
Q Consensus 420 i~~ll-~~~y~ 429 (513)
+.+++ |+.|+
T Consensus 308 ~~~~~~~~~~~ 318 (321)
T TIGR00661 308 ILDIRNMKRYK 318 (321)
T ss_pred HHhcccccccc
Confidence 77777 77764
No 31
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=99.89 E-value=3.1e-20 Score=180.69 Aligned_cols=336 Identities=18% Similarity=0.152 Sum_probs=208.5
Q ss_pred eEeEEcCCCCCChHHHHHHHHHHHHhCCCc-EEEEEeecCCcc-c--cCCeEEEEecCcccchhhHHHHHhhchhHHHHH
Q psy14941 28 KILAIFPTPAKSHQIIFDTILVELYQRGHD-LTVITQYPETLV-H--YERMKVLDIKGTHTYNSTIEDIYELSADSIKRI 103 (513)
Q Consensus 28 kIL~~~p~~~~gH~~~~~~la~~L~~rGH~-Vt~~~~~~~~~~-~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (513)
+|+ +...++.||+.|.++++++|.++|++ |.++.+....+. . ..++.+..++.......... .... .++..
T Consensus 2 ~iv-l~~gGTGGHv~pAlAl~~~l~~~g~~~v~~~~~~~~~e~~l~~~~~~~~~~I~~~~~~~~~~~--~~~~-~~~~~- 76 (357)
T COG0707 2 KIV-LTAGGTGGHVFPALALAEELAKRGWEQVIVLGTGDGLEAFLVKQYGIEFELIPSGGLRRKGSL--KLLK-APFKL- 76 (357)
T ss_pred eEE-EEeCCCccchhHHHHHHHHHHhhCccEEEEecccccceeeeccccCceEEEEecccccccCcH--HHHH-HHHHH-
Confidence 344 77788899999999999999999995 666655332211 0 22344444442221111000 0000 01111
Q ss_pred HHHHHHHHHHHHHHhCCHhHHHHhccCCCccEEEEccchh--chHHhhhhccCCCEEEEeCCCCchhhhhhcCCCCCCCc
Q psy14941 104 HINFIDQEIQVENIFLHENMKSIWNMENKYDLIITEMFLT--DAFLVIPYLYKVPYISIASSTLHPQHSERLGLPDNPSY 181 (513)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~Dlvi~d~~~~--~~~~~~a~~l~iP~i~~~~~~~~~~~~~~~g~p~~~s~ 181 (513)
+.. ..+..++++ +.+||+|+....+. ++. ..|..+|||++...+...
T Consensus 77 ----------~~~---~~~a~~il~-~~kPd~vig~Ggyvs~P~~-~Aa~~~~iPv~ihEqn~~---------------- 125 (357)
T COG0707 77 ----------LKG---VLQARKILK-KLKPDVVIGTGGYVSGPVG-IAAKLLGIPVIIHEQNAV---------------- 125 (357)
T ss_pred ----------HHH---HHHHHHHHH-HcCCCEEEecCCccccHHH-HHHHhCCCCEEEEecCCC----------------
Confidence 121 134567777 78899999955333 334 367888999887655322
Q ss_pred cCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhCCCCCCHHhhhcCccEEEEeccCccCCCccCCCc
Q psy14941 182 IPSYVSAYTDHMSFTERLSNTFVGLYYKWYYDYKSHGAANRIIHKYFPEIPRIQDLLNTCSLTLVNTHHTINIARPLPAN 261 (513)
Q Consensus 182 ~P~~~~~~~~~~~~~~r~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~s~~~l~~~~p~~p~ 261 (513)
|. ...|+.+ + .++.+.+ +++..+ ......+
T Consensus 126 -~G----------~ank~~~------------------------~-------------~a~~V~~-~f~~~~-~~~~~~~ 155 (357)
T COG0707 126 -PG----------LANKILS------------------------K-------------FAKKVAS-AFPKLE-AGVKPEN 155 (357)
T ss_pred -cc----------hhHHHhH------------------------H-------------hhceeee-cccccc-ccCCCCc
Confidence 11 1111111 0 0111221 111100 0111224
Q ss_pred eEEeCcccccCCCCCcHHHHHHhhcCCCceEEEEeCcccccCCCCHHHHHHHHHHHhcCC--CeEEEEEcCCCCCC---C
Q psy14941 262 VVEIGGIHVKPAKKLNEEMERFLNESHNGVIYFSMGSMLKTSSFPPDKFKAFLKAFSKIP--QRVLWKFEDNDTSI---F 336 (513)
Q Consensus 262 ~~~vG~l~~~~~~~l~~~l~~~l~~~~~~~v~vs~Gs~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~---~ 336 (513)
++.+|--..++-..++..-.++....++++|+|.-||+. ....-+.+.++...+. ..+++.++.+.+.+ .
T Consensus 156 ~~~tG~Pvr~~~~~~~~~~~~~~~~~~~~~ilV~GGS~G-----a~~ln~~v~~~~~~l~~~~~v~~~~G~~~~~~~~~~ 230 (357)
T COG0707 156 VVVTGIPVRPEFEELPAAEVRKDGRLDKKTILVTGGSQG-----AKALNDLVPEALAKLANRIQVIHQTGKNDLEELKSA 230 (357)
T ss_pred eEEecCcccHHhhccchhhhhhhccCCCcEEEEECCcch-----hHHHHHHHHHHHHHhhhCeEEEEEcCcchHHHHHHH
Confidence 666663222221112333333322226899999999987 4445555556665665 47888888764221 0
Q ss_pred CCCCc-EEEecCCCcc-ccccCCCceEEeccCCcccHHHHHHcCcceEeeccc----cCcHHHHHHHHHcCcEEEeccCC
Q psy14941 337 KPYKN-IRTSSWMPQR-DIFAHPNMKLFISHGGLLGITEAVYEGIPVLGIPVF----GDQWANIKKLESLKAGKLLPYLE 410 (513)
Q Consensus 337 ~~~~n-v~~~~~~pq~-~lL~h~~~~~~IthgG~~s~~Eal~~GvP~i~~P~~----~DQ~~na~~~~~~G~G~~l~~~~ 410 (513)
....+ +.+.+|+++. +++ ..+|++||++|.+|+.|+++.|+|+|.+|.. .||..||..++++|.|.+++..+
T Consensus 231 ~~~~~~~~v~~f~~dm~~~~--~~ADLvIsRaGa~Ti~E~~a~g~P~IliP~p~~~~~~Q~~NA~~l~~~gaa~~i~~~~ 308 (357)
T COG0707 231 YNELGVVRVLPFIDDMAALL--AAADLVISRAGALTIAELLALGVPAILVPYPPGADGHQEYNAKFLEKAGAALVIRQSE 308 (357)
T ss_pred HhhcCcEEEeeHHhhHHHHH--HhccEEEeCCcccHHHHHHHhCCCEEEeCCCCCccchHHHHHHHHHhCCCEEEecccc
Confidence 10223 8889998876 667 8899999999999999999999999999973 38999999999999999999999
Q ss_pred CCHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q psy14941 411 ITEETVSDALKIVL-SPEYKENAEDLGTRFRDRPQSPLEVAIYWIEYVI 458 (513)
Q Consensus 411 ~~~~~l~~ai~~ll-~~~y~~~a~~~~~~~~~~~~~~~~~a~~~ie~~~ 458 (513)
+|.+++.+.|.+++ +++-.+++.+.++.+... +..++.++.++...
T Consensus 309 lt~~~l~~~i~~l~~~~~~l~~m~~~a~~~~~p--~aa~~i~~~~~~~~ 355 (357)
T COG0707 309 LTPEKLAELILRLLSNPEKLKAMAENAKKLGKP--DAAERIADLLLALA 355 (357)
T ss_pred CCHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHh
Confidence 99999999999999 876666666666666655 67777777776654
No 32
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.85 E-value=3.4e-19 Score=177.76 Aligned_cols=162 Identities=20% Similarity=0.245 Sum_probs=123.7
Q ss_pred CCceEEEEeCcccccCCCCHHHHHHHHHHHhcCCC--eEEEEEcCCCCCCC-----CCCCcEEEecCCCc-cccccCCCc
Q psy14941 288 HNGVIYFSMGSMLKTSSFPPDKFKAFLKAFSKIPQ--RVLWKFEDNDTSIF-----KPYKNIRTSSWMPQ-RDIFAHPNM 359 (513)
Q Consensus 288 ~~~~v~vs~Gs~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~-----~~~~nv~~~~~~pq-~~lL~h~~~ 359 (513)
+.++|++..|+.. .......+.+++.++.. .++|.++....++. . .-++.+.+|+.+ .+++ +.+
T Consensus 182 ~~~~i~~~gg~~~-----~~~~~~~l~~a~~~~~~~~~~~~~~G~g~~~~~~~~~~~-~~~v~~~g~~~~~~~~~--~~~ 253 (357)
T PRK00726 182 GKPTLLVVGGSQG-----ARVLNEAVPEALALLPEALQVIHQTGKGDLEEVRAAYAA-GINAEVVPFIDDMAAAY--AAA 253 (357)
T ss_pred CCeEEEEECCcHh-----HHHHHHHHHHHHHHhhhCcEEEEEcCCCcHHHHHHHhhc-CCcEEEeehHhhHHHHH--HhC
Confidence 3456666545542 22233344477666543 45666665432110 2 224888999843 5888 899
Q ss_pred eEEeccCCcccHHHHHHcCcceEeecc----ccCcHHHHHHHHHcCcEEEeccCCCCHHHHHHHHHHhc-CHHHHHHHHH
Q psy14941 360 KLFISHGGLLGITEAVYEGIPVLGIPV----FGDQWANIKKLESLKAGKLLPYLEITEETVSDALKIVL-SPEYKENAED 434 (513)
Q Consensus 360 ~~~IthgG~~s~~Eal~~GvP~i~~P~----~~DQ~~na~~~~~~G~G~~l~~~~~~~~~l~~ai~~ll-~~~y~~~a~~ 434 (513)
|++|+|+|.++++||+++|+|+|++|. .+||..|+..+.+.|.|..++.++++++.+.++|.+++ |+++++++.+
T Consensus 254 d~~i~~~g~~~~~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~~i~~~~~g~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~ 333 (357)
T PRK00726 254 DLVICRAGASTVAELAAAGLPAILVPLPHAADDHQTANARALVDAGAALLIPQSDLTPEKLAEKLLELLSDPERLEAMAE 333 (357)
T ss_pred CEEEECCCHHHHHHHHHhCCCEEEecCCCCCcCcHHHHHHHHHHCCCEEEEEcccCCHHHHHHHHHHHHcCHHHHHHHHH
Confidence 999999999999999999999999997 46899999999999999999888888999999999999 9999999999
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHH
Q psy14941 435 LGTRFRDRPQSPLEVAIYWIEYVIK 459 (513)
Q Consensus 435 ~~~~~~~~~~~~~~~a~~~ie~~~~ 459 (513)
-+....+. .+.++++..++.++|
T Consensus 334 ~~~~~~~~--~~~~~~~~~~~~~~~ 356 (357)
T PRK00726 334 AARALGKP--DAAERLADLIEELAR 356 (357)
T ss_pred HHHhcCCc--CHHHHHHHHHHHHhh
Confidence 88888655 778888888877765
No 33
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.81 E-value=2.4e-17 Score=164.15 Aligned_cols=329 Identities=17% Similarity=0.143 Sum_probs=192.8
Q ss_pred eEeEEcCCCCCChHHHHHHHHHHHHhCCCcEEEEEeecCCccc---cCCeEEEEecCcccchhhHHHHHhhchhHHHHHH
Q psy14941 28 KILAIFPTPAKSHQIIFDTILVELYQRGHDLTVITQYPETLVH---YERMKVLDIKGTHTYNSTIEDIYELSADSIKRIH 104 (513)
Q Consensus 28 kIL~~~p~~~~gH~~~~~~la~~L~~rGH~Vt~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (513)
+|+ +......||......++++|.++||+|++++........ ..++....++........ .+..+.
T Consensus 1 ~~~-~~~~~~gG~~~~~~~la~~l~~~G~ev~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~ 69 (350)
T cd03785 1 RIL-IAGGGTGGHIFPALALAEELRERGAEVLFLGTKRGLEARLVPKAGIPLHTIPVGGLRRKG----------SLKKLK 69 (350)
T ss_pred CEE-EEecCchhhhhHHHHHHHHHHhCCCEEEEEECCCcchhhcccccCCceEEEEecCcCCCC----------hHHHHH
Confidence 577 666677799999999999999999999999874321110 123444444322111100 000000
Q ss_pred HHHHHHHHHHHHHhCCHhHHHHhccCCCccEEEEccchh-chHHhhhhccCCCEEEEeCCCCchhhhhhcCCCCCCCccC
Q psy14941 105 INFIDQEIQVENIFLHENMKSIWNMENKYDLIITEMFLT-DAFLVIPYLYKVPYISIASSTLHPQHSERLGLPDNPSYIP 183 (513)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~Dlvi~d~~~~-~~~~~~a~~l~iP~i~~~~~~~~~~~~~~~g~p~~~s~~P 183 (513)
. ... .......+.++++ +.+||+|++..... .....+|+..++|++...... .|
T Consensus 70 ~-~~~------~~~~~~~~~~~i~-~~~pDvI~~~~~~~~~~~~~~a~~~~~p~v~~~~~~-----------------~~ 124 (350)
T cd03785 70 A-PFK------LLKGVLQARKILK-KFKPDVVVGFGGYVSGPVGLAAKLLGIPLVIHEQNA-----------------VP 124 (350)
T ss_pred H-HHH------HHHHHHHHHHHHH-hcCCCEEEECCCCcchHHHHHHHHhCCCEEEEcCCC-----------------Cc
Confidence 0 000 0001124556676 67899999865322 122236778899987532110 00
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhCCCCCCHHhhhcCccEEEEeccCccCCCccCCCceE
Q psy14941 184 SYVSAYTDHMSFTERLSNTFVGLYYKWYYDYKSHGAANRIIHKYFPEIPRIQDLLNTCSLTLVNTHHTINIARPLPANVV 263 (513)
Q Consensus 184 ~~~~~~~~~~~~~~r~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~s~~~l~~~~p~~p~~~ 263 (513)
.+..| .. .+.++.+++.+....+. . ...++.
T Consensus 125 ----------~~~~~------------------------~~-------------~~~~~~vi~~s~~~~~~-~-~~~~~~ 155 (350)
T cd03785 125 ----------GLANR------------------------LL-------------ARFADRVALSFPETAKY-F-PKDKAV 155 (350)
T ss_pred ----------cHHHH------------------------HH-------------HHhhCEEEEcchhhhhc-C-CCCcEE
Confidence 11111 00 01134555555444333 1 123556
Q ss_pred EeCcccccCCCCCcHHHHHHhhcC-CCceEEEEeCcccccCCCCHHHHHHHHHHHhcCC---CeEEEEEcCCCCCC---C
Q psy14941 264 EIGGIHVKPAKKLNEEMERFLNES-HNGVIYFSMGSMLKTSSFPPDKFKAFLKAFSKIP---QRVLWKFEDNDTSI---F 336 (513)
Q Consensus 264 ~vG~l~~~~~~~l~~~l~~~l~~~-~~~~v~vs~Gs~~~~~~~~~~~~~~~~~~~~~~~---~~~i~~~~~~~~~~---~ 336 (513)
++|...........+. .+.+... ++++|++..|+.. .....+.+++++..++ ..+++.++.....+ .
T Consensus 156 ~i~n~v~~~~~~~~~~-~~~~~~~~~~~~i~~~~g~~~-----~~~~~~~l~~a~~~l~~~~~~~~~i~G~g~~~~l~~~ 229 (350)
T cd03785 156 VTGNPVREEILALDRE-RARLGLRPGKPTLLVFGGSQG-----ARAINEAVPEALAELLRKRLQVIHQTGKGDLEEVKKA 229 (350)
T ss_pred EECCCCchHHhhhhhh-HHhcCCCCCCeEEEEECCcHh-----HHHHHHHHHHHHHHhhccCeEEEEEcCCccHHHHHHH
Confidence 6664221110000111 1222222 3445555555543 2223333445555443 35566666542111 0
Q ss_pred ---CCCCcEEEecCC-CccccccCCCceEEeccCCcccHHHHHHcCcceEeecc----ccCcHHHHHHHHHcCcEEEecc
Q psy14941 337 ---KPYKNIRTSSWM-PQRDIFAHPNMKLFISHGGLLGITEAVYEGIPVLGIPV----FGDQWANIKKLESLKAGKLLPY 408 (513)
Q Consensus 337 ---~~~~nv~~~~~~-pq~~lL~h~~~~~~IthgG~~s~~Eal~~GvP~i~~P~----~~DQ~~na~~~~~~G~G~~l~~ 408 (513)
. .+|+++.+|+ +..++| ..+|++|+++|.+++.||+++|+|+|++|. ..+|..|+..+.+.|.|..++.
T Consensus 230 ~~~~-~~~v~~~g~~~~~~~~l--~~ad~~v~~sg~~t~~Eam~~G~Pvv~~~~~~~~~~~~~~~~~~l~~~g~g~~v~~ 306 (350)
T cd03785 230 YEEL-GVNYEVFPFIDDMAAAY--AAADLVISRAGASTVAELAALGLPAILIPLPYAADDHQTANARALVKAGAAVLIPQ 306 (350)
T ss_pred Hhcc-CCCeEEeehhhhHHHHH--HhcCEEEECCCHhHHHHHHHhCCCEEEeecCCCCCCcHHHhHHHHHhCCCEEEEec
Confidence 2 3689999998 345788 889999999999999999999999999986 4679999999999999999986
Q ss_pred CCCCHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCCCChHHHHHH
Q psy14941 409 LEITEETVSDALKIVL-SPEYKENAEDLGTRFRDRPQSPLEVAIY 452 (513)
Q Consensus 409 ~~~~~~~l~~ai~~ll-~~~y~~~a~~~~~~~~~~~~~~~~~a~~ 452 (513)
.+.+.+++.++|++++ |++.++++.+-+...... .+.++.++
T Consensus 307 ~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~--~~~~~i~~ 349 (350)
T cd03785 307 EELTPERLAAALLELLSDPERLKAMAEAARSLARP--DAAERIAD 349 (350)
T ss_pred CCCCHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC--CHHHHHHh
Confidence 6678999999999999 988888877777666544 55665543
No 34
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.76 E-value=4.7e-16 Score=156.47 Aligned_cols=156 Identities=15% Similarity=0.187 Sum_probs=117.6
Q ss_pred CCceEEEEeCcccccCCCCHHHHHHHHHHHhcCCC-eEEEEEcCCC-----C----CCCCCCCcEEEecCCCcc-ccccC
Q psy14941 288 HNGVIYFSMGSMLKTSSFPPDKFKAFLKAFSKIPQ-RVLWKFEDND-----T----SIFKPYKNIRTSSWMPQR-DIFAH 356 (513)
Q Consensus 288 ~~~~v~vs~Gs~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~-----~----~~~~~~~nv~~~~~~pq~-~lL~h 356 (513)
+++++++.-|+.. ..+.+..+++++.+.+. ++++..+++. + .+ . ++||++.+|+++. +++
T Consensus 201 ~~~~il~~~G~~~-----~~k~~~~li~~l~~~~~~~~viv~G~~~~~~~~l~~~~~~-~-~~~v~~~g~~~~~~~l~-- 271 (380)
T PRK13609 201 NKKILLIMAGAHG-----VLGNVKELCQSLMSVPDLQVVVVCGKNEALKQSLEDLQET-N-PDALKVFGYVENIDELF-- 271 (380)
T ss_pred CCcEEEEEcCCCC-----CCcCHHHHHHHHhhCCCcEEEEEeCCCHHHHHHHHHHHhc-C-CCcEEEEechhhHHHHH--
Confidence 3567777767764 22345667777766543 7777766421 1 12 3 4689999999874 788
Q ss_pred CCceEEeccCCcccHHHHHHcCcceEee-ccccCcHHHHHHHHHcCcEEEeccCCCCHHHHHHHHHHhc-CHHHHHHHHH
Q psy14941 357 PNMKLFISHGGLLGITEAVYEGIPVLGI-PVFGDQWANIKKLESLKAGKLLPYLEITEETVSDALKIVL-SPEYKENAED 434 (513)
Q Consensus 357 ~~~~~~IthgG~~s~~Eal~~GvP~i~~-P~~~DQ~~na~~~~~~G~G~~l~~~~~~~~~l~~ai~~ll-~~~y~~~a~~ 434 (513)
..+|++|+.+|..++.||+++|+|+|+. |..+.|..|+..+++.|+|+... +.+++.++|.+++ |++.++++.+
T Consensus 272 ~~aD~~v~~~gg~t~~EA~a~g~PvI~~~~~~g~~~~n~~~~~~~G~~~~~~----~~~~l~~~i~~ll~~~~~~~~m~~ 347 (380)
T PRK13609 272 RVTSCMITKPGGITLSEAAALGVPVILYKPVPGQEKENAMYFERKGAAVVIR----DDEEVFAKTEALLQDDMKLLQMKE 347 (380)
T ss_pred HhccEEEeCCCchHHHHHHHhCCCEEECCCCCCcchHHHHHHHhCCcEEEEC----CHHHHHHHHHHHHCCHHHHHHHHH
Confidence 7789999999988999999999999995 77788899999999999998764 6899999999999 9888888777
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHH
Q psy14941 435 LGTRFRDRPQSPLEVAIYWIEYVI 458 (513)
Q Consensus 435 ~~~~~~~~~~~~~~~a~~~ie~~~ 458 (513)
-+..+... .+.+..++.++..+
T Consensus 348 ~~~~~~~~--~s~~~i~~~i~~~~ 369 (380)
T PRK13609 348 AMKSLYLP--EPADHIVDDILAEN 369 (380)
T ss_pred HHHHhCCC--chHHHHHHHHHHhh
Confidence 66666544 46666666666554
No 35
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.75 E-value=6.9e-16 Score=155.26 Aligned_cols=158 Identities=16% Similarity=0.173 Sum_probs=117.3
Q ss_pred CCceEEEEeCcccccCCCCHHHHHHHHHHH-hcCC-CeEEEEEcCCC-----CCC--CCCCCcEEEecCCCcc-ccccCC
Q psy14941 288 HNGVIYFSMGSMLKTSSFPPDKFKAFLKAF-SKIP-QRVLWKFEDND-----TSI--FKPYKNIRTSSWMPQR-DIFAHP 357 (513)
Q Consensus 288 ~~~~v~vs~Gs~~~~~~~~~~~~~~~~~~~-~~~~-~~~i~~~~~~~-----~~~--~~~~~nv~~~~~~pq~-~lL~h~ 357 (513)
++++|++..|+.. ..+.+..+++++ +..+ .++++.++++. +.+ .. .+++.+.+|+++. +++ .
T Consensus 201 ~~~~ilv~~G~lg-----~~k~~~~li~~~~~~~~~~~~vvv~G~~~~l~~~l~~~~~~-~~~v~~~G~~~~~~~~~--~ 272 (391)
T PRK13608 201 DKQTILMSAGAFG-----VSKGFDTMITDILAKSANAQVVMICGKSKELKRSLTAKFKS-NENVLILGYTKHMNEWM--A 272 (391)
T ss_pred CCCEEEEECCCcc-----cchhHHHHHHHHHhcCCCceEEEEcCCCHHHHHHHHHHhcc-CCCeEEEeccchHHHHH--H
Confidence 4678888888875 224455556554 3333 37777766542 111 02 4689999999764 677 8
Q ss_pred CceEEeccCCcccHHHHHHcCcceEee-ccccCcHHHHHHHHHcCcEEEeccCCCCHHHHHHHHHHhc-CHHHHHHHHHH
Q psy14941 358 NMKLFISHGGLLGITEAVYEGIPVLGI-PVFGDQWANIKKLESLKAGKLLPYLEITEETVSDALKIVL-SPEYKENAEDL 435 (513)
Q Consensus 358 ~~~~~IthgG~~s~~Eal~~GvP~i~~-P~~~DQ~~na~~~~~~G~G~~l~~~~~~~~~l~~ai~~ll-~~~y~~~a~~~ 435 (513)
.+|++|+.+|..|+.||+++|+|+|++ |..++|..|+..+++.|+|+... +.+++.++|.+++ |++.++++++-
T Consensus 273 ~aDl~I~k~gg~tl~EA~a~G~PvI~~~~~pgqe~~N~~~~~~~G~g~~~~----~~~~l~~~i~~ll~~~~~~~~m~~~ 348 (391)
T PRK13608 273 SSQLMITKPGGITISEGLARCIPMIFLNPAPGQELENALYFEEKGFGKIAD----TPEEAIKIVASLTNGNEQLTNMIST 348 (391)
T ss_pred hhhEEEeCCchHHHHHHHHhCCCEEECCCCCCcchhHHHHHHhCCcEEEeC----CHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 899999998888999999999999998 77778889999999999998876 7899999999999 98877777777
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHH
Q psy14941 436 GTRFRDRPQSPLEVAIYWIEYVIK 459 (513)
Q Consensus 436 ~~~~~~~~~~~~~~a~~~ie~~~~ 459 (513)
+...... .+.+..++.++..+.
T Consensus 349 ~~~~~~~--~s~~~i~~~l~~l~~ 370 (391)
T PRK13608 349 MEQDKIK--YATQTICRDLLDLIG 370 (391)
T ss_pred HHHhcCC--CCHHHHHHHHHHHhh
Confidence 7766543 445555555555554
No 36
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.73 E-value=1e-15 Score=152.18 Aligned_cols=100 Identities=25% Similarity=0.326 Sum_probs=84.5
Q ss_pred CccccccCCCceEEeccCCcccHHHHHHcCcceEeeccc---cCcHHHHHHHHHcCcEEEeccCCCCHHHHHHHHHHhc-
Q psy14941 349 PQRDIFAHPNMKLFISHGGLLGITEAVYEGIPVLGIPVF---GDQWANIKKLESLKAGKLLPYLEITEETVSDALKIVL- 424 (513)
Q Consensus 349 pq~~lL~h~~~~~~IthgG~~s~~Eal~~GvP~i~~P~~---~DQ~~na~~~~~~G~G~~l~~~~~~~~~l~~ai~~ll- 424 (513)
+-.+++ +.+|++|+++|.+++.||+++|+|+|++|.. ++|..|+..+++.|.|..++..+.+.++|.++|.+++
T Consensus 243 ~~~~~l--~~ad~~v~~~g~~~l~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~i~~~~~G~~~~~~~~~~~~l~~~i~~ll~ 320 (348)
T TIGR01133 243 NMAAAY--AAADLVISRAGASTVAELAAAGVPAILIPYPYAADDQYYNAKFLEDLGAGLVIRQKELLPEKLLEALLKLLL 320 (348)
T ss_pred CHHHHH--HhCCEEEECCChhHHHHHHHcCCCEEEeeCCCCccchhhHHHHHHHCCCEEEEecccCCHHHHHHHHHHHHc
Confidence 345778 8899999999988999999999999999863 5788899999999999999877778999999999999
Q ss_pred CHHHHHHHHHHHHHHhcCCCChHHHHHH
Q psy14941 425 SPEYKENAEDLGTRFRDRPQSPLEVAIY 452 (513)
Q Consensus 425 ~~~y~~~a~~~~~~~~~~~~~~~~~a~~ 452 (513)
|+++++++.+-+.....+ ...+++++
T Consensus 321 ~~~~~~~~~~~~~~~~~~--~~~~~i~~ 346 (348)
T TIGR01133 321 DPANLEAMAEAARKLAKP--DAAKRIAE 346 (348)
T ss_pred CHHHHHHHHHHHHhcCCc--cHHHHHHh
Confidence 999888888777766554 55665554
No 37
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.70 E-value=7.8e-15 Score=147.42 Aligned_cols=128 Identities=10% Similarity=0.087 Sum_probs=97.7
Q ss_pred CeEEEEEcCCC-----CCC-CCCCCcEEEecCCCcc-ccccCCCceEEeccCCcccHHHHHHcCcceEeeccccCc-HHH
Q psy14941 322 QRVLWKFEDND-----TSI-FKPYKNIRTSSWMPQR-DIFAHPNMKLFISHGGLLGITEAVYEGIPVLGIPVFGDQ-WAN 393 (513)
Q Consensus 322 ~~~i~~~~~~~-----~~~-~~~~~nv~~~~~~pq~-~lL~h~~~~~~IthgG~~s~~Eal~~GvP~i~~P~~~DQ-~~n 393 (513)
.++++.++++. +.+ .. ..++++.+|+++. +++ ..+|++|+.+|.+|+.||+++|+|+|+.+....| ..|
T Consensus 242 ~~~~vi~G~~~~~~~~L~~~~~-~~~v~~~G~~~~~~~l~--~aaDv~V~~~g~~ti~EAma~g~PvI~~~~~pgqe~gn 318 (382)
T PLN02605 242 GQVVVICGRNKKLQSKLESRDW-KIPVKVRGFVTNMEEWM--GACDCIITKAGPGTIAEALIRGLPIILNGYIPGQEEGN 318 (382)
T ss_pred ceEEEEECCCHHHHHHHHhhcc-cCCeEEEeccccHHHHH--HhCCEEEECCCcchHHHHHHcCCCEEEecCCCccchhh
Confidence 35677776542 111 02 3578999999875 777 8899999999999999999999999999765555 489
Q ss_pred HHHHHHcCcEEEeccCCCCHHHHHHHHHHhc-C-HHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q psy14941 394 IKKLESLKAGKLLPYLEITEETVSDALKIVL-S-PEYKENAEDLGTRFRDRPQSPLEVAIYWIEYVI 458 (513)
Q Consensus 394 a~~~~~~G~G~~l~~~~~~~~~l~~ai~~ll-~-~~y~~~a~~~~~~~~~~~~~~~~~a~~~ie~~~ 458 (513)
+..+.+.|.|+... +.+++.++|.+++ | ++.++++.+.+...... ++.+..++.+....
T Consensus 319 ~~~i~~~g~g~~~~----~~~~la~~i~~ll~~~~~~~~~m~~~~~~~~~~--~a~~~i~~~l~~~~ 379 (382)
T PLN02605 319 VPYVVDNGFGAFSE----SPKEIARIVAEWFGDKSDELEAMSENALKLARP--EAVFDIVHDLHELV 379 (382)
T ss_pred HHHHHhCCceeecC----CHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC--chHHHHHHHHHHHh
Confidence 99999999998763 7899999999999 7 88777777777766544 55566666555443
No 38
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=99.67 E-value=1e-14 Score=135.10 Aligned_cols=317 Identities=18% Similarity=0.150 Sum_probs=197.3
Q ss_pred ccCceEeEEcCCC-CCChHHHHHHHHHHHHhC--CCcEEEEEeecCCcc--ccCCeEEEEecCcc-cchhhHHHHHhhch
Q psy14941 24 QQCSKILAIFPTP-AKSHQIIFDTILVELYQR--GHDLTVITQYPETLV--HYERMKVLDIKGTH-TYNSTIEDIYELSA 97 (513)
Q Consensus 24 ~~~~kIL~~~p~~-~~gH~~~~~~la~~L~~r--GH~Vt~~~~~~~~~~--~~~~~~~i~~~~~~-~~~~~~~~~~~~~~ 97 (513)
+.+.||++++-.. |-||...+..+|++|++. |.+|++++..+.... ..+++.++.+|.-. ..++.. ...+..
T Consensus 7 ~~~~Ri~~Yshd~~GlGHlrR~~~Ia~aLv~d~~~~~Il~IsG~~~~~~F~~~~gVd~V~LPsl~k~~~G~~-~~~d~~- 84 (400)
T COG4671 7 SKRPRILFYSHDLLGLGHLRRALRIAHALVEDYLGFDILIISGGPPAGGFPGPAGVDFVKLPSLIKGDNGEY-GLVDLD- 84 (400)
T ss_pred hccceEEEEehhhccchHHHHHHHHHHHHhhcccCceEEEEeCCCccCCCCCcccCceEecCceEecCCCce-eeeecC-
Confidence 3466998554433 679999999999999998 999999998553221 14677788776211 111110 001111
Q ss_pred hHHHHHHHHHHHHHHHHHHHhCCHhHHHHhccCCCccEEEEccchhchHHhhhhcc---------CCCEEEEeCCCCchh
Q psy14941 98 DSIKRIHINFIDQEIQVENIFLHENMKSIWNMENKYDLIITEMFLTDAFLVIPYLY---------KVPYISIASSTLHPQ 168 (513)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~Dlvi~d~~~~~~~~~~a~~l---------~iP~i~~~~~~~~~~ 168 (513)
....++.. . . ..-+....+ +.+||++|+|.+ +.++ .-+.. +-+.+...
T Consensus 85 ~~l~e~~~-~------R-----s~lil~t~~-~fkPDi~IVd~~-P~Gl--r~EL~ptL~yl~~~~t~~vL~l------- 141 (400)
T COG4671 85 GDLEETKK-L------R-----SQLILSTAE-TFKPDIFIVDKF-PFGL--RFELLPTLEYLKTTGTRLVLGL------- 141 (400)
T ss_pred CCHHHHHH-H------H-----HHHHHHHHH-hcCCCEEEEecc-ccch--hhhhhHHHHHHhhcCCcceeeh-------
Confidence 11111111 0 0 112334444 688999999976 4442 11111 10111110
Q ss_pred hhhhcCCCCCCCccCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhCCCCCCHHhhhcCccEEEEec
Q psy14941 169 HSERLGLPDNPSYIPSYVSAYTDHMSFTERLSNTFVGLYYKWYYDYKSHGAANRIIHKYFPEIPRIQDLLNTCSLTLVNT 248 (513)
Q Consensus 169 ~~~~~g~p~~~s~~P~~~~~~~~~~~~~~r~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~s 248 (513)
++..+. |... . .-|.|. ...+.++++| |.+++-.
T Consensus 142 -r~i~D~-------p~~~-----~-~~w~~~-------------------~~~~~I~r~y-------------D~V~v~G 175 (400)
T COG4671 142 -RSIRDI-------PQEL-----E-ADWRRA-------------------ETVRLINRFY-------------DLVLVYG 175 (400)
T ss_pred -Hhhhhc-------hhhh-----c-cchhhh-------------------HHHHHHHHhh-------------eEEEEec
Confidence 000110 0000 0 001111 1222334443 5666666
Q ss_pred cCccC-------CCccCCCceEEeCcccccC-CCCCcHHHHHHhhcCCCceEEEEeCcccccCCCCHHHHHHHHHHHhcC
Q psy14941 249 HHTIN-------IARPLPANVVEIGGIHVKP-AKKLNEEMERFLNESHNGVIYFSMGSMLKTSSFPPDKFKAFLKAFSKI 320 (513)
Q Consensus 249 ~~~l~-------~~~p~~p~~~~vG~l~~~~-~~~l~~~l~~~l~~~~~~~v~vs~Gs~~~~~~~~~~~~~~~~~~~~~~ 320 (513)
+|.+. ++..+..+++|+|-+.... ..++|.. ...++.-|+||-|... ...+++...++|...+
T Consensus 176 dP~f~d~~~~~~~~~~i~~k~~ytG~vq~~~~~~~~p~~-----~~pE~~~Ilvs~GGG~----dG~eLi~~~l~A~~~l 246 (400)
T COG4671 176 DPDFYDPLTEFPFAPAIRAKMRYTGFVQRSLPHLPLPPH-----EAPEGFDILVSVGGGA----DGAELIETALAAAQLL 246 (400)
T ss_pred CccccChhhcCCccHhhhhheeEeEEeeccCcCCCCCCc-----CCCccceEEEecCCCh----hhHHHHHHHHHHhhhC
Confidence 66433 3344567899999882211 1122322 1135678999999885 5789999999998776
Q ss_pred CC-e--EEEEEcCCCCCC--------C--CCCCcEEEecCCCcc-ccccCCCceEEeccCCcccHHHHHHcCcceEeecc
Q psy14941 321 PQ-R--VLWKFEDNDTSI--------F--KPYKNIRTSSWMPQR-DIFAHPNMKLFISHGGLLGITEAVYEGIPVLGIPV 386 (513)
Q Consensus 321 ~~-~--~i~~~~~~~~~~--------~--~~~~nv~~~~~~pq~-~lL~h~~~~~~IthgG~~s~~Eal~~GvP~i~~P~ 386 (513)
+. + .+...++. +|+ . . .+++.+..|-.+. +++ ..++.+|+-||+||++|-+.+|+|.+++|.
T Consensus 247 ~~l~~~~~ivtGP~-MP~~~r~~l~~~A~~-~p~i~I~~f~~~~~~ll--~gA~~vVSm~GYNTvCeILs~~k~aLivPr 322 (400)
T COG4671 247 AGLNHKWLIVTGPF-MPEAQRQKLLASAPK-RPHISIFEFRNDFESLL--AGARLVVSMGGYNTVCEILSFGKPALIVPR 322 (400)
T ss_pred CCCCcceEEEeCCC-CCHHHHHHHHHhccc-CCCeEEEEhhhhHHHHH--HhhheeeecccchhhhHHHhCCCceEEecc
Confidence 54 3 44444542 221 0 2 4899999998876 666 789999999999999999999999999998
Q ss_pred c---cCcHHHHHHHHHcCcEEEeccCCCCHHHHHHHHHHhc
Q psy14941 387 F---GDQWANIKKLESLKAGKLLPYLEITEETVSDALKIVL 424 (513)
Q Consensus 387 ~---~DQ~~na~~~~~~G~G~~l~~~~~~~~~l~~ai~~ll 424 (513)
. .||..-|+|+++.|+.-++..++++++.+.++|...+
T Consensus 323 ~~p~eEQliRA~Rl~~LGL~dvL~pe~lt~~~La~al~~~l 363 (400)
T COG4671 323 AAPREEQLIRAQRLEELGLVDVLLPENLTPQNLADALKAAL 363 (400)
T ss_pred CCCcHHHHHHHHHHHhcCcceeeCcccCChHHHHHHHHhcc
Confidence 5 4999999999999999999999999999999999888
No 39
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=99.60 E-value=4.7e-14 Score=134.63 Aligned_cols=99 Identities=18% Similarity=0.173 Sum_probs=77.8
Q ss_pred CceEEEEeCcccccCCCCHHHHHHHHHHHhcCC--CeEEEEEcCCCC-----CC--CCCCCcEEEecCCCcc-ccccCCC
Q psy14941 289 NGVIYFSMGSMLKTSSFPPDKFKAFLKAFSKIP--QRVLWKFEDNDT-----SI--FKPYKNIRTSSWMPQR-DIFAHPN 358 (513)
Q Consensus 289 ~~~v~vs~Gs~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~-----~~--~~~~~nv~~~~~~pq~-~lL~h~~ 358 (513)
.+.|++++|+.- +......+++++.+.+ .++.+.++.... .+ .. .+|+.+..++++. +++ ..
T Consensus 170 ~~~iLi~~GG~d-----~~~~~~~~l~~l~~~~~~~~i~vv~G~~~~~~~~l~~~~~~-~~~i~~~~~~~~m~~lm--~~ 241 (279)
T TIGR03590 170 LRRVLVSFGGAD-----PDNLTLKLLSALAESQINISITLVTGSSNPNLDELKKFAKE-YPNIILFIDVENMAELM--NE 241 (279)
T ss_pred cCeEEEEeCCcC-----CcCHHHHHHHHHhccccCceEEEEECCCCcCHHHHHHHHHh-CCCEEEEeCHHHHHHHH--HH
Confidence 368999999764 3335566777776653 377777776421 11 02 5689999999986 888 88
Q ss_pred ceEEeccCCcccHHHHHHcCcceEeeccccCcHHHHHH
Q psy14941 359 MKLFISHGGLLGITEAVYEGIPVLGIPVFGDQWANIKK 396 (513)
Q Consensus 359 ~~~~IthgG~~s~~Eal~~GvP~i~~P~~~DQ~~na~~ 396 (513)
+|++||+|| +|++|+++.|+|+|++|...+|..||+.
T Consensus 242 aDl~Is~~G-~T~~E~~a~g~P~i~i~~~~nQ~~~a~~ 278 (279)
T TIGR03590 242 ADLAIGAAG-STSWERCCLGLPSLAICLAENQQSNSQQ 278 (279)
T ss_pred CCEEEECCc-hHHHHHHHcCCCEEEEEecccHHHHhhh
Confidence 999999999 9999999999999999999999999975
No 40
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=99.60 E-value=3.5e-14 Score=142.09 Aligned_cols=157 Identities=17% Similarity=0.072 Sum_probs=104.3
Q ss_pred CCceEEEEeCcccccCCCCHHHHHHHHHHHhcC----CC-eEEEEEcCCC----CCC----C-CCCCcEEEecCCCcccc
Q psy14941 288 HNGVIYFSMGSMLKTSSFPPDKFKAFLKAFSKI----PQ-RVLWKFEDND----TSI----F-KPYKNIRTSSWMPQRDI 353 (513)
Q Consensus 288 ~~~~v~vs~Gs~~~~~~~~~~~~~~~~~~~~~~----~~-~~i~~~~~~~----~~~----~-~~~~nv~~~~~~pq~~l 353 (513)
++++|.+.-||... .-.+....+++++..+ |. ++++...+.. +.+ . . ...+....+ +..++
T Consensus 190 ~~~~Ilvl~GSR~a---ei~k~~~~ll~a~~~l~~~~p~~~~vi~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~-~~~~~ 264 (385)
T TIGR00215 190 NGETLALLPGSRGS---EVEKLFPLFLKAAQLLEQQEPDLRRVLPVVNFKRRLQFEQIKAEYGP-DLQLHLIDG-DARKA 264 (385)
T ss_pred CCCEEEEECCCCHH---HHHHhHHHHHHHHHHHHHhCCCeEEEEEeCCchhHHHHHHHHHHhCC-CCcEEEECc-hHHHH
Confidence 46777777787752 1133455566555443 33 5555433211 111 0 1 223433332 33467
Q ss_pred ccCCCceEEeccCCcccHHHHHHcCcceEee----cccc---------CcHHHHHHHHHcCcEEEeccCCCCHHHHHHHH
Q psy14941 354 FAHPNMKLFISHGGLLGITEAVYEGIPVLGI----PVFG---------DQWANIKKLESLKAGKLLPYLEITEETVSDAL 420 (513)
Q Consensus 354 L~h~~~~~~IthgG~~s~~Eal~~GvP~i~~----P~~~---------DQ~~na~~~~~~G~G~~l~~~~~~~~~l~~ai 420 (513)
+ ..+|++|+-.|..|+ |++++|+|+|++ |+.. +|..|+..+...|+...+..+++|++.|.+.+
T Consensus 265 l--~aADl~V~~SGt~tl-Ea~a~G~P~Vv~yk~~pl~~~~~~~~~~~~~~~~~nil~~~~~~pel~q~~~~~~~l~~~~ 341 (385)
T TIGR00215 265 M--FAADAALLASGTAAL-EAALIKTPMVVGYRMKPLTFLIARRLVKTDYISLPNILANRLLVPELLQEECTPHPLAIAL 341 (385)
T ss_pred H--HhCCEEeecCCHHHH-HHHHcCCCEEEEEcCCHHHHHHHHHHHcCCeeeccHHhcCCccchhhcCCCCCHHHHHHHH
Confidence 7 789999999998877 999999999999 8732 38889999999999988877889999999999
Q ss_pred HHhc-CH----HHHHHHHH----HHHHHhcCCCChHHHHHHHH
Q psy14941 421 KIVL-SP----EYKENAED----LGTRFRDRPQSPLEVAIYWI 454 (513)
Q Consensus 421 ~~ll-~~----~y~~~a~~----~~~~~~~~~~~~~~~a~~~i 454 (513)
.+++ |+ ++++++++ +.+.+.+. ++.++++..|
T Consensus 342 ~~ll~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~a~~i 382 (385)
T TIGR00215 342 LLLLENGLKAYKEMHRERQFFEELRQRIYCN--ADSERAAQAV 382 (385)
T ss_pred HHHhcCCcccHHHHHHHHHHHHHHHHHhcCC--CHHHHHHHHH
Confidence 9999 88 65555444 44444333 5667777654
No 41
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=99.54 E-value=4.8e-16 Score=137.16 Aligned_cols=135 Identities=24% Similarity=0.293 Sum_probs=98.2
Q ss_pred eEEEEeCcccccCCCCHHHHHHH---HHHHhcC--CCeEEEEEcCCCCCC------CCCCCcEEEecCCC-ccccccCCC
Q psy14941 291 VIYFSMGSMLKTSSFPPDKFKAF---LKAFSKI--PQRVLWKFEDNDTSI------FKPYKNIRTSSWMP-QRDIFAHPN 358 (513)
Q Consensus 291 ~v~vs~Gs~~~~~~~~~~~~~~~---~~~~~~~--~~~~i~~~~~~~~~~------~~~~~nv~~~~~~p-q~~lL~h~~ 358 (513)
+|+|+.||... ..+.+.+ ...+... +.++++.++.....+ .. ..|+.+.+|.+ ..+++ ..
T Consensus 1 tilv~gGs~g~-----~~l~~~v~~~~~~~~~~~~~~~viv~~G~~~~~~~~~~~~~~-~~~v~~~~~~~~m~~~m--~~ 72 (167)
T PF04101_consen 1 TILVTGGSQGA-----RDLNRLVLKILELLAEKHKNIQVIVQTGKNNYEELKIKVENF-NPNVKVFGFVDNMAELM--AA 72 (167)
T ss_dssp -EEEEETTTSH-----HHHHCCCCCHHHHHHHHHHHCCCCCCCTTCECHHHCCCHCCT-TCCCEEECSSSSHHHHH--HH
T ss_pred CEEEEECCCCH-----HHHHHHHHHHHHHHhhcCCCcEEEEEECCCcHHHHHHHHhcc-CCcEEEEechhhHHHHH--HH
Confidence 58999998762 2222222 2222221 357888888753211 02 37899999999 56888 88
Q ss_pred ceEEeccCCcccHHHHHHcCcceEeecccc----CcHHHHHHHHHcCcEEEeccCCCCHHHHHHHHHHhc-CHHHHHHHH
Q psy14941 359 MKLFISHGGLLGITEAVYEGIPVLGIPVFG----DQWANIKKLESLKAGKLLPYLEITEETVSDALKIVL-SPEYKENAE 433 (513)
Q Consensus 359 ~~~~IthgG~~s~~Eal~~GvP~i~~P~~~----DQ~~na~~~~~~G~G~~l~~~~~~~~~l~~ai~~ll-~~~y~~~a~ 433 (513)
+|++|||||.+|++|++++|+|+|++|... +|..||..+++.|.|+.+.....+.+.|.++|.+++ ++.+...+.
T Consensus 73 aDlvIs~aG~~Ti~E~l~~g~P~I~ip~~~~~~~~q~~na~~~~~~g~~~~~~~~~~~~~~L~~~i~~l~~~~~~~~~~~ 152 (167)
T PF04101_consen 73 ADLVISHAGAGTIAEALALGKPAIVIPLPGAADNHQEENAKELAKKGAAIMLDESELNPEELAEAIEELLSDPEKLKEMA 152 (167)
T ss_dssp HSEEEECS-CHHHHHHHHCT--EEEE--TTT-T-CHHHHHHHHHHCCCCCCSECCC-SCCCHHHHHHCHCCCHH-SHHHC
T ss_pred cCEEEeCCCccHHHHHHHcCCCeeccCCCCcchHHHHHHHHHHHHcCCccccCcccCCHHHHHHHHHHHHcCcHHHHHHH
Confidence 999999999999999999999999999988 999999999999999999988888999999999999 877644433
No 42
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.48 E-value=1.3e-11 Score=122.92 Aligned_cols=138 Identities=17% Similarity=0.264 Sum_probs=97.4
Q ss_pred CCceEEEEeCcccccCCCCHHHHHHHHHHHhcCC----CeEEEEEcCCC---CCCCCCCCcEEEecCCCccc---cccCC
Q psy14941 288 HNGVIYFSMGSMLKTSSFPPDKFKAFLKAFSKIP----QRVLWKFEDND---TSIFKPYKNIRTSSWMPQRD---IFAHP 357 (513)
Q Consensus 288 ~~~~v~vs~Gs~~~~~~~~~~~~~~~~~~~~~~~----~~~i~~~~~~~---~~~~~~~~nv~~~~~~pq~~---lL~h~ 357 (513)
.++.+++..|+.. ..+....+++++.++. ..+++.-++.. +.+ . .+||.+.+++|+.+ ++ .
T Consensus 195 ~~~~~i~~~G~~~-----~~k~~~~~i~~~~~l~~~~~~~l~i~G~~~~~~~~~~-~-~~~v~~~g~~~~~~~~~~~--~ 265 (364)
T cd03814 195 PDRPVLLYVGRLA-----PEKNLEALLDADLPLRRRPPVRLVIVGDGPARARLEA-R-YPNVHFLGFLDGEELAAAY--A 265 (364)
T ss_pred CCCeEEEEEeccc-----cccCHHHHHHHHHHhhhcCCceEEEEeCCchHHHHhc-c-CCcEEEEeccCHHHHHHHH--H
Confidence 3456777778764 2334455556555543 25555433322 223 4 68999999999774 67 7
Q ss_pred CceEEeccCC----cccHHHHHHcCcceEeeccccCcHHHHHHHHHcCcEEEeccCCCCHHHHHHHHHHhc-CHHHHHHH
Q psy14941 358 NMKLFISHGG----LLGITEAVYEGIPVLGIPVFGDQWANIKKLESLKAGKLLPYLEITEETVSDALKIVL-SPEYKENA 432 (513)
Q Consensus 358 ~~~~~IthgG----~~s~~Eal~~GvP~i~~P~~~DQ~~na~~~~~~G~G~~l~~~~~~~~~l~~ai~~ll-~~~y~~~a 432 (513)
.+++++..++ .+++.||+++|+|+|+.+..+ +...+++.+.|...+ .-+.+++.++|.+++ |++.++++
T Consensus 266 ~~d~~l~~s~~e~~~~~~lEa~a~g~PvI~~~~~~----~~~~i~~~~~g~~~~--~~~~~~l~~~i~~l~~~~~~~~~~ 339 (364)
T cd03814 266 SADVFVFPSRTETFGLVVLEAMASGLPVVAPDAGG----PADIVTDGENGLLVE--PGDAEAFAAALAALLADPELRRRM 339 (364)
T ss_pred hCCEEEECcccccCCcHHHHHHHcCCCEEEcCCCC----chhhhcCCcceEEcC--CCCHHHHHHHHHHHHcCHHHHHHH
Confidence 7899997654 378999999999999987554 555667778998887 446788999999999 98877777
Q ss_pred HHHHHHHh
Q psy14941 433 EDLGTRFR 440 (513)
Q Consensus 433 ~~~~~~~~ 440 (513)
.+-+....
T Consensus 340 ~~~~~~~~ 347 (364)
T cd03814 340 AARARAEA 347 (364)
T ss_pred HHHHHHHH
Confidence 76666655
No 43
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.43 E-value=5.1e-12 Score=127.26 Aligned_cols=165 Identities=16% Similarity=0.072 Sum_probs=94.8
Q ss_pred CceEEEEeCcccccCCCCHHHHHHHHHHHhcC----CC-eEEEEEcCCC----CCCCCC-C--CcEEEecCCCccccccC
Q psy14941 289 NGVIYFSMGSMLKTSSFPPDKFKAFLKAFSKI----PQ-RVLWKFEDND----TSIFKP-Y--KNIRTSSWMPQRDIFAH 356 (513)
Q Consensus 289 ~~~v~vs~Gs~~~~~~~~~~~~~~~~~~~~~~----~~-~~i~~~~~~~----~~~~~~-~--~nv~~~~~~pq~~lL~h 356 (513)
+++|++..||... ........+++++..+ +. +++|..++.. +.+... . -++.+... .-.+++
T Consensus 186 ~~~il~~~gsr~~---~~~~~~~~l~~a~~~l~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~-- 259 (380)
T PRK00025 186 ARVLALLPGSRGQ---EIKRLLPPFLKAAQLLQQRYPDLRFVLPLVNPKRREQIEEALAEYAGLEVTLLDG-QKREAM-- 259 (380)
T ss_pred CCEEEEECCCCHH---HHHHHHHHHHHHHHHHHHhCCCeEEEEecCChhhHHHHHHHHhhcCCCCeEEEcc-cHHHHH--
Confidence 4566666666541 1113345555655433 33 6777654221 111000 1 13333221 123666
Q ss_pred CCceEEeccCCcccHHHHHHcCcceEeeccccC--------cHHH-----HHHHHHcCcEEEeccCCCCHHHHHHHHHHh
Q psy14941 357 PNMKLFISHGGLLGITEAVYEGIPVLGIPVFGD--------QWAN-----IKKLESLKAGKLLPYLEITEETVSDALKIV 423 (513)
Q Consensus 357 ~~~~~~IthgG~~s~~Eal~~GvP~i~~P~~~D--------Q~~n-----a~~~~~~G~G~~l~~~~~~~~~l~~ai~~l 423 (513)
..+|++|+.+|.+++ ||+++|+|+|+.|-... |..| +..+.+.|++..+...+.+++++.+++.++
T Consensus 260 ~~aDl~v~~sG~~~l-Ea~a~G~PvI~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~i~~l 338 (380)
T PRK00025 260 AAADAALAASGTVTL-ELALLKVPMVVGYKVSPLTFWIAKRLVKVPYVSLPNLLAGRELVPELLQEEATPEKLARALLPL 338 (380)
T ss_pred HhCCEEEECccHHHH-HHHHhCCCEEEEEccCHHHHHHHHHHHcCCeeehHHHhcCCCcchhhcCCCCCHHHHHHHHHHH
Confidence 889999999998776 99999999999854321 1111 222333333433444567899999999999
Q ss_pred c-CHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHHh
Q psy14941 424 L-SPEYKENAEDLGTRFRDR-PQSPLEVAIYWIEYVIKY 460 (513)
Q Consensus 424 l-~~~y~~~a~~~~~~~~~~-~~~~~~~a~~~ie~~~~~ 460 (513)
+ |++.++++.+-.+.+... ..++.++.++.|...++.
T Consensus 339 l~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~ 377 (380)
T PRK00025 339 LADGARRQALLEGFTELHQQLRCGADERAAQAVLELLKQ 377 (380)
T ss_pred hcCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhh
Confidence 9 987776555543222211 126888888888876543
No 44
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=99.30 E-value=1.3e-09 Score=109.32 Aligned_cols=140 Identities=16% Similarity=0.214 Sum_probs=90.9
Q ss_pred CCceEEEEeCcccccCCCCHHHHHHHHHHHhcC----CCeEEEEEcCCCC-------CCCCCCCcEEEecCCCccc---c
Q psy14941 288 HNGVIYFSMGSMLKTSSFPPDKFKAFLKAFSKI----PQRVLWKFEDNDT-------SIFKPYKNIRTSSWMPQRD---I 353 (513)
Q Consensus 288 ~~~~v~vs~Gs~~~~~~~~~~~~~~~~~~~~~~----~~~~i~~~~~~~~-------~~~~~~~nv~~~~~~pq~~---l 353 (513)
.++.+++..|+... .+....+++++.++ +.++++.-.+... .... .+|+.+.+++|+.+ +
T Consensus 218 ~~~~~i~~~G~~~~-----~k~~~~l~~~~~~l~~~~~~~l~i~G~~~~~~~~~~~~~~~~-~~~v~~~g~~~~~~~~~~ 291 (394)
T cd03794 218 DDKFVVLYAGNIGR-----AQGLDTLLEAAALLKDRPDIRFLIVGDGPEKEELKELAKALG-LDNVTFLGRVPKEELPEL 291 (394)
T ss_pred CCcEEEEEecCccc-----ccCHHHHHHHHHHHhhcCCeEEEEeCCcccHHHHHHHHHHcC-CCcEEEeCCCChHHHHHH
Confidence 45677888888752 33344455554443 2355443322221 0113 67999999998764 5
Q ss_pred ccCCCceEEeccCC---------cccHHHHHHcCcceEeeccccCcHHHHHHHHHcCcEEEeccCCCCHHHHHHHHHHhc
Q psy14941 354 FAHPNMKLFISHGG---------LLGITEAVYEGIPVLGIPVFGDQWANIKKLESLKAGKLLPYLEITEETVSDALKIVL 424 (513)
Q Consensus 354 L~h~~~~~~IthgG---------~~s~~Eal~~GvP~i~~P~~~DQ~~na~~~~~~G~G~~l~~~~~~~~~l~~ai~~ll 424 (513)
+ ..++++|.... .+++.||+++|+|+|+.+..+.+. .+...+.|..++.. +.+++.++|.+++
T Consensus 292 ~--~~~di~i~~~~~~~~~~~~~p~~~~Ea~~~G~pvi~~~~~~~~~----~~~~~~~g~~~~~~--~~~~l~~~i~~~~ 363 (394)
T cd03794 292 L--AAADVGLVPLKPGPAFEGVSPSKLFEYMAAGKPVLASVDGESAE----LVEEAGAGLVVPPG--DPEALAAAILELL 363 (394)
T ss_pred H--HhhCeeEEeccCcccccccCchHHHHHHHCCCcEEEecCCCchh----hhccCCcceEeCCC--CHHHHHHHHHHHH
Confidence 6 67888885433 234799999999999998765433 33334788887743 7899999999999
Q ss_pred -CHHHHHHHHHHHHHHhc
Q psy14941 425 -SPEYKENAEDLGTRFRD 441 (513)
Q Consensus 425 -~~~y~~~a~~~~~~~~~ 441 (513)
|++.++++.+-+.....
T Consensus 364 ~~~~~~~~~~~~~~~~~~ 381 (394)
T cd03794 364 DDPEERAEMGENGRRYVE 381 (394)
T ss_pred hChHHHHHHHHHHHHHHH
Confidence 88777766665554443
No 45
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=99.30 E-value=3.6e-10 Score=112.16 Aligned_cols=137 Identities=18% Similarity=0.227 Sum_probs=92.3
Q ss_pred CCceEEEEeCcccccCCCCHHHHHHHHHHHhcCC---CeEEEEEcCCCCCC-----CCCCCcEEEecCCCcc---ccccC
Q psy14941 288 HNGVIYFSMGSMLKTSSFPPDKFKAFLKAFSKIP---QRVLWKFEDNDTSI-----FKPYKNIRTSSWMPQR---DIFAH 356 (513)
Q Consensus 288 ~~~~v~vs~Gs~~~~~~~~~~~~~~~~~~~~~~~---~~~i~~~~~~~~~~-----~~~~~nv~~~~~~pq~---~lL~h 356 (513)
.++.+++..|+.. +.+....+++++..+. .++++.-++..... .. .+++.+.+++|+. +++
T Consensus 189 ~~~~~i~~~G~~~-----~~k~~~~li~~~~~l~~~~~~l~i~G~~~~~~~~~~~~~~-~~~v~~~g~~~~~~~~~~~-- 260 (359)
T cd03823 189 GGRLRFGFIGQLT-----PHKGVDLLLEAFKRLPRGDIELVIVGNGLELEEESYELEG-DPRVEFLGAYPQEEIDDFY-- 260 (359)
T ss_pred CCceEEEEEecCc-----cccCHHHHHHHHHHHHhcCcEEEEEcCchhhhHHHHhhcC-CCeEEEeCCCCHHHHHHHH--
Confidence 4567777788865 3344556666666553 35555433322111 02 4899999999866 446
Q ss_pred CCceEEecc-----CCcccHHHHHHcCcceEeeccccCcHHHHHHHHHcCcEEEeccCCCCHHHHHHHHHHhc-CHHHHH
Q psy14941 357 PNMKLFISH-----GGLLGITEAVYEGIPVLGIPVFGDQWANIKKLESLKAGKLLPYLEITEETVSDALKIVL-SPEYKE 430 (513)
Q Consensus 357 ~~~~~~Ith-----gG~~s~~Eal~~GvP~i~~P~~~DQ~~na~~~~~~G~G~~l~~~~~~~~~l~~ai~~ll-~~~y~~ 430 (513)
.+++++|.. |...++.||+++|+|+|+.+.. .+...+.+.+.|..++.. +.+++.+++.+++ |+..++
T Consensus 261 ~~ad~~i~ps~~~e~~~~~~~Ea~a~G~Pvi~~~~~----~~~e~i~~~~~g~~~~~~--d~~~l~~~i~~l~~~~~~~~ 334 (359)
T cd03823 261 AEIDVLVVPSIWPENFPLVIREALAAGVPVIASDIG----GMAELVRDGVNGLLFPPG--DAEDLAAALERLIDDPDLLE 334 (359)
T ss_pred HhCCEEEEcCcccCCCChHHHHHHHCCCCEEECCCC----CHHHHhcCCCcEEEECCC--CHHHHHHHHHHHHhChHHHH
Confidence 677888842 3345799999999999997643 456666666789888743 5899999999999 887666
Q ss_pred HHHHHHHH
Q psy14941 431 NAEDLGTR 438 (513)
Q Consensus 431 ~a~~~~~~ 438 (513)
.+.+-+..
T Consensus 335 ~~~~~~~~ 342 (359)
T cd03823 335 RLRAGIEP 342 (359)
T ss_pred HHHHhHHH
Confidence 66554433
No 46
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=99.27 E-value=8.1e-09 Score=104.58 Aligned_cols=92 Identities=14% Similarity=0.187 Sum_probs=67.1
Q ss_pred CCcEEEecCCCccc---cccCCCceEEec---cCCc-ccHHHHHHcCcceEeeccccCcHHHHHHHHHcCcEEEeccCCC
Q psy14941 339 YKNIRTSSWMPQRD---IFAHPNMKLFIS---HGGL-LGITEAVYEGIPVLGIPVFGDQWANIKKLESLKAGKLLPYLEI 411 (513)
Q Consensus 339 ~~nv~~~~~~pq~~---lL~h~~~~~~It---hgG~-~s~~Eal~~GvP~i~~P~~~DQ~~na~~~~~~G~G~~l~~~~~ 411 (513)
.++|.+.+++|+.+ ++ ..+++++. +.|. .++.||+++|+|+|+... ......+.+...|..++. -
T Consensus 280 ~~~V~f~G~v~~~~~~~~l--~~adv~v~~s~~e~~~~~llEAmA~G~PVIas~~----~g~~e~i~~~~~G~lv~~--~ 351 (396)
T cd03818 280 LSRVHFLGRVPYDQYLALL--QVSDVHVYLTYPFVLSWSLLEAMACGCLVVGSDT----APVREVITDGENGLLVDF--F 351 (396)
T ss_pred cceEEEeCCCCHHHHHHHH--HhCcEEEEcCcccccchHHHHHHHCCCCEEEcCC----CCchhhcccCCceEEcCC--C
Confidence 46899999999875 45 56677764 2222 478999999999999743 345555666667888874 3
Q ss_pred CHHHHHHHHHHhc-CHHHHHHHHHHHHH
Q psy14941 412 TEETVSDALKIVL-SPEYKENAEDLGTR 438 (513)
Q Consensus 412 ~~~~l~~ai~~ll-~~~y~~~a~~~~~~ 438 (513)
+.+++.++|.+++ |++.++++.+-+..
T Consensus 352 d~~~la~~i~~ll~~~~~~~~l~~~ar~ 379 (396)
T cd03818 352 DPDALAAAVIELLDDPARRARLRRAARR 379 (396)
T ss_pred CHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 6899999999999 88766665554443
No 47
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=99.24 E-value=4.1e-09 Score=108.92 Aligned_cols=137 Identities=14% Similarity=0.187 Sum_probs=94.9
Q ss_pred CceEEEEeCcccccCCCCHHHHHHHHHHHhcCCC-eEEEEEcCCC---CCC-CCCCCcEEEecCCCcc---ccccCCCce
Q psy14941 289 NGVIYFSMGSMLKTSSFPPDKFKAFLKAFSKIPQ-RVLWKFEDND---TSI-FKPYKNIRTSSWMPQR---DIFAHPNMK 360 (513)
Q Consensus 289 ~~~v~vs~Gs~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~---~~~-~~~~~nv~~~~~~pq~---~lL~h~~~~ 360 (513)
+..+++..|+.. +.+....+++++++.+. ++++.-++.. +.+ .. ..||.+.+++|+. +++ ..+|
T Consensus 262 ~~~~i~~vGrl~-----~~K~~~~li~a~~~~~~~~l~ivG~G~~~~~l~~~~~-~~~V~f~G~v~~~ev~~~~--~~aD 333 (465)
T PLN02871 262 EKPLIVYVGRLG-----AEKNLDFLKRVMERLPGARLAFVGDGPYREELEKMFA-GTPTVFTGMLQGDELSQAY--ASGD 333 (465)
T ss_pred CCeEEEEeCCCc-----hhhhHHHHHHHHHhCCCcEEEEEeCChHHHHHHHHhc-cCCeEEeccCCHHHHHHHH--HHCC
Confidence 445667778875 55667888898888765 6555443321 111 12 4689999999865 456 7788
Q ss_pred EEeccCC----cccHHHHHHcCcceEeeccccCcHHHHHHHHH---cCcEEEeccCCCCHHHHHHHHHHhc-CHHHHHHH
Q psy14941 361 LFISHGG----LLGITEAVYEGIPVLGIPVFGDQWANIKKLES---LKAGKLLPYLEITEETVSDALKIVL-SPEYKENA 432 (513)
Q Consensus 361 ~~IthgG----~~s~~Eal~~GvP~i~~P~~~DQ~~na~~~~~---~G~G~~l~~~~~~~~~l~~ai~~ll-~~~y~~~a 432 (513)
+||.-.. .+++.||+++|+|+|+....+ ....+++ .+.|..++.. +.+++.++|.+++ |++.++++
T Consensus 334 v~V~pS~~E~~g~~vlEAmA~G~PVI~s~~gg----~~eiv~~~~~~~~G~lv~~~--d~~~la~~i~~ll~~~~~~~~~ 407 (465)
T PLN02871 334 VFVMPSESETLGFVVLEAMASGVPVVAARAGG----IPDIIPPDQEGKTGFLYTPG--DVDDCVEKLETLLADPELRERM 407 (465)
T ss_pred EEEECCcccccCcHHHHHHHcCCCEEEcCCCC----cHhhhhcCCCCCceEEeCCC--CHHHHHHHHHHHHhCHHHHHHH
Confidence 8885443 357899999999999876432 3344555 6789988743 6899999999999 88766655
Q ss_pred HHHHHHH
Q psy14941 433 EDLGTRF 439 (513)
Q Consensus 433 ~~~~~~~ 439 (513)
.+-+...
T Consensus 408 ~~~a~~~ 414 (465)
T PLN02871 408 GAAAREE 414 (465)
T ss_pred HHHHHHH
Confidence 5555443
No 48
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.24 E-value=4.8e-10 Score=101.39 Aligned_cols=144 Identities=19% Similarity=0.188 Sum_probs=110.7
Q ss_pred CCceEEEEeCcccccCCCCHHHHHHHHHHHhcCCCeEEEEEcCCC--CCC-----CCCCCcEEEecCCCc-cccccCCCc
Q psy14941 288 HNGVIYFSMGSMLKTSSFPPDKFKAFLKAFSKIPQRVLWKFEDND--TSI-----FKPYKNIRTSSWMPQ-RDIFAHPNM 359 (513)
Q Consensus 288 ~~~~v~vs~Gs~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~-----~~~~~nv~~~~~~pq-~~lL~h~~~ 359 (513)
+..-|+|++|.. .+....-.++..+.+.+..+-++.+..+ +++ .. .+|+.+...... ..|+ ..+
T Consensus 157 ~~r~ilI~lGGs-----Dpk~lt~kvl~~L~~~~~nl~iV~gs~~p~l~~l~k~~~~-~~~i~~~~~~~dma~LM--ke~ 228 (318)
T COG3980 157 PKRDILITLGGS-----DPKNLTLKVLAELEQKNVNLHIVVGSSNPTLKNLRKRAEK-YPNINLYIDTNDMAELM--KEA 228 (318)
T ss_pred chheEEEEccCC-----ChhhhHHHHHHHhhccCeeEEEEecCCCcchhHHHHHHhh-CCCeeeEecchhHHHHH--Hhc
Confidence 356699999986 3666777888888877766555555322 221 02 567776666553 4677 889
Q ss_pred eEEeccCCcccHHHHHHcCcceEeeccccCcHHHHHHHHHcCcEEEeccCCCCHHHHHHHHHHhc-CHHHHHHHHHHHHH
Q psy14941 360 KLFISHGGLLGITEAVYEGIPVLGIPVFGDQWANIKKLESLKAGKLLPYLEITEETVSDALKIVL-SPEYKENAEDLGTR 438 (513)
Q Consensus 360 ~~~IthgG~~s~~Eal~~GvP~i~~P~~~DQ~~na~~~~~~G~G~~l~~~~~~~~~l~~ai~~ll-~~~y~~~a~~~~~~ 438 (513)
++.|+.|| .|++|++..|+|.+++|+...|---|...+..|+-..+... ++.+.....+.++. |...+++.-.-++.
T Consensus 229 d~aI~AaG-stlyEa~~lgvP~l~l~~a~NQ~~~a~~f~~lg~~~~l~~~-l~~~~~~~~~~~i~~d~~~rk~l~~~~~~ 306 (318)
T COG3980 229 DLAISAAG-STLYEALLLGVPSLVLPLAENQIATAKEFEALGIIKQLGYH-LKDLAKDYEILQIQKDYARRKNLSFGSKL 306 (318)
T ss_pred chheeccc-hHHHHHHHhcCCceEEeeeccHHHHHHHHHhcCchhhccCC-CchHHHHHHHHHhhhCHHHhhhhhhccce
Confidence 99999998 78999999999999999999999999999999999888754 77777888888888 88888887766665
Q ss_pred Hhc
Q psy14941 439 FRD 441 (513)
Q Consensus 439 ~~~ 441 (513)
+-+
T Consensus 307 i~d 309 (318)
T COG3980 307 IGD 309 (318)
T ss_pred eec
Confidence 543
No 49
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=99.24 E-value=1.1e-09 Score=109.89 Aligned_cols=158 Identities=18% Similarity=0.099 Sum_probs=107.8
Q ss_pred CCceEEEEeCcccccCCCCHHHHHHHHHHHhcC----CCeEEEEEcC-CCCC---------CCCC-------------CC
Q psy14941 288 HNGVIYFSMGSMLKTSSFPPDKFKAFLKAFSKI----PQRVLWKFED-NDTS---------IFKP-------------YK 340 (513)
Q Consensus 288 ~~~~v~vs~Gs~~~~~~~~~~~~~~~~~~~~~~----~~~~i~~~~~-~~~~---------~~~~-------------~~ 340 (513)
+.+++.+--||... .....+..+++++..+ +..|++.+.+ .+.+ + .. .+
T Consensus 204 ~~~~lllLpGSR~a---e~~~~lp~~l~al~~L~~~~~~~~v~~~~~~~~~~~~~~~l~~~g-~~~~~~~~~~~~~~~~~ 279 (396)
T TIGR03492 204 GRFRIALLPGSRPP---EAYRNLKLLLRALEALPDSQPFVFLAAIVPSLSLEKLQAILEDLG-WQLEGSSEDQTSLFQKG 279 (396)
T ss_pred CCCEEEEECCCCHH---HHHccHHHHHHHHHHHhhCCCeEEEEEeCCCCCHHHHHHHHHhcC-ceecCCccccchhhccC
Confidence 45778888888742 1223344666666655 3478887733 2111 1 10 02
Q ss_pred cEEEecCCCc-cccccCCCceEEeccCCcccHHHHHHcCcceEeeccccCcHHHHHHHHHc----CcEEEeccCCCCHHH
Q psy14941 341 NIRTSSWMPQ-RDIFAHPNMKLFISHGGLLGITEAVYEGIPVLGIPVFGDQWANIKKLESL----KAGKLLPYLEITEET 415 (513)
Q Consensus 341 nv~~~~~~pq-~~lL~h~~~~~~IthgG~~s~~Eal~~GvP~i~~P~~~DQ~~na~~~~~~----G~G~~l~~~~~~~~~ 415 (513)
++.+..+..+ .+++ ..++++|+-.|..| .|++..|+|+|.+|.-..|. |+...++. |.++.+. +.+.+.
T Consensus 280 ~~~v~~~~~~~~~~l--~~ADlvI~rSGt~T-~E~a~lg~P~Ilip~~~~q~-na~~~~~~~~l~g~~~~l~--~~~~~~ 353 (396)
T TIGR03492 280 TLEVLLGRGAFAEIL--HWADLGIAMAGTAT-EQAVGLGKPVIQLPGKGPQF-TYGFAEAQSRLLGGSVFLA--SKNPEQ 353 (396)
T ss_pred ceEEEechHhHHHHH--HhCCEEEECcCHHH-HHHHHhCCCEEEEeCCCCHH-HHHHHHhhHhhcCCEEecC--CCCHHH
Confidence 3555555433 4677 78999999999655 99999999999999766776 99887774 7777776 345699
Q ss_pred HHHHHHHhc-CHHHHHHHH-HHHHHHhcCCCChHHHHHHHHHHH
Q psy14941 416 VSDALKIVL-SPEYKENAE-DLGTRFRDRPQSPLEVAIYWIEYV 457 (513)
Q Consensus 416 l~~ai~~ll-~~~y~~~a~-~~~~~~~~~~~~~~~~a~~~ie~~ 457 (513)
+.+++.+++ |++.++++. +..+.+.+. ++.+++++.|+..
T Consensus 354 l~~~l~~ll~d~~~~~~~~~~~~~~lg~~--~a~~~ia~~i~~~ 395 (396)
T TIGR03492 354 AAQVVRQLLADPELLERCRRNGQERMGPP--GASARIAESILKQ 395 (396)
T ss_pred HHHHHHHHHcCHHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHh
Confidence 999999999 988777666 455555443 7788888777643
No 50
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=99.23 E-value=1.9e-09 Score=106.62 Aligned_cols=138 Identities=16% Similarity=0.233 Sum_probs=89.5
Q ss_pred CCceEEEEeCcccccCCCCHHHHHHHHHHHhcC----CC-eEEEEEcCCCCC--------C-CCCCCcEEEecCCCcc-c
Q psy14941 288 HNGVIYFSMGSMLKTSSFPPDKFKAFLKAFSKI----PQ-RVLWKFEDNDTS--------I-FKPYKNIRTSSWMPQR-D 352 (513)
Q Consensus 288 ~~~~v~vs~Gs~~~~~~~~~~~~~~~~~~~~~~----~~-~~i~~~~~~~~~--------~-~~~~~nv~~~~~~pq~-~ 352 (513)
.++.+++..|+.. +.+-...+++++..+ +. ++++.-++.... . .. .++|.+.++..+. +
T Consensus 186 ~~~~~i~~~G~~~-----~~k~~~~li~~~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~-~~~v~~~g~~~~~~~ 259 (359)
T cd03808 186 EDDPVFLFVARLL-----KDKGIDELLEAARILKAKGPNVRLLLVGDGDEENPAAILEIEKLGL-EGRVEFLGFRDDVPE 259 (359)
T ss_pred CCCcEEEEEeccc-----cccCHHHHHHHHHHHHhcCCCeEEEEEcCCCcchhhHHHHHHhcCC-cceEEEeeccccHHH
Confidence 4567888888875 233344555555443 33 555543332110 1 02 4688888875443 6
Q ss_pred cccCCCceEEeccCC----cccHHHHHHcCcceEeeccccCcHHHHHHHHHcCcEEEeccCCCCHHHHHHHHHHhc-CHH
Q psy14941 353 IFAHPNMKLFISHGG----LLGITEAVYEGIPVLGIPVFGDQWANIKKLESLKAGKLLPYLEITEETVSDALKIVL-SPE 427 (513)
Q Consensus 353 lL~h~~~~~~IthgG----~~s~~Eal~~GvP~i~~P~~~DQ~~na~~~~~~G~G~~l~~~~~~~~~l~~ai~~ll-~~~ 427 (513)
++ .+++++|..+. .+++.||+++|+|+|+.+..+ +...+++.+.|..++. -+.+++.++|.+++ |++
T Consensus 260 ~~--~~adi~i~ps~~e~~~~~~~Ea~~~G~Pvi~s~~~~----~~~~i~~~~~g~~~~~--~~~~~~~~~i~~l~~~~~ 331 (359)
T cd03808 260 LL--AAADVFVLPSYREGLPRVLLEAMAMGRPVIATDVPG----CREAVIDGVNGFLVPP--GDAEALADAIERLIEDPE 331 (359)
T ss_pred HH--HhccEEEecCcccCcchHHHHHHHcCCCEEEecCCC----chhhhhcCcceEEECC--CCHHHHHHHHHHHHhCHH
Confidence 66 67888886543 578999999999999976543 3455666778888763 36899999999999 877
Q ss_pred HHHHHHHHHHHH
Q psy14941 428 YKENAEDLGTRF 439 (513)
Q Consensus 428 y~~~a~~~~~~~ 439 (513)
..+++.+-+...
T Consensus 332 ~~~~~~~~~~~~ 343 (359)
T cd03808 332 LRARMGQAARKR 343 (359)
T ss_pred HHHHHHHHHHHH
Confidence 666555544444
No 51
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=99.22 E-value=6.3e-09 Score=103.12 Aligned_cols=135 Identities=19% Similarity=0.296 Sum_probs=92.1
Q ss_pred CCceEEEEeCcccccCCCCHHHHHHHHHHHhcCC----C-eEEEEEcCCC---C------CCCCCCCcEEEecCCCcc--
Q psy14941 288 HNGVIYFSMGSMLKTSSFPPDKFKAFLKAFSKIP----Q-RVLWKFEDND---T------SIFKPYKNIRTSSWMPQR-- 351 (513)
Q Consensus 288 ~~~~v~vs~Gs~~~~~~~~~~~~~~~~~~~~~~~----~-~~i~~~~~~~---~------~~~~~~~nv~~~~~~pq~-- 351 (513)
.++.+++.+|+.. +.+....+++++..+. . ++++.-++.. + .+ . .++|.+.+++++.
T Consensus 197 ~~~~~i~~~g~~~-----~~k~~~~~i~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~-~-~~~v~~~g~~~~~~~ 269 (374)
T cd03801 197 EDEPVILFVGRLV-----PRKGVDLLLEALAKLRKEYPDVRLVIVGDGPLREELEALAAELG-L-GDRVTFLGFVPDEDL 269 (374)
T ss_pred CCCeEEEEecchh-----hhcCHHHHHHHHHHHhhhcCCeEEEEEeCcHHHHHHHHHHHHhC-C-CcceEEEeccChhhH
Confidence 4567778888875 3344555666655432 2 4444332211 0 12 4 7899999999865
Q ss_pred -ccccCCCceEEec----cCCcccHHHHHHcCcceEeeccccCcHHHHHHHHHcCcEEEeccCCCCHHHHHHHHHHhc-C
Q psy14941 352 -DIFAHPNMKLFIS----HGGLLGITEAVYEGIPVLGIPVFGDQWANIKKLESLKAGKLLPYLEITEETVSDALKIVL-S 425 (513)
Q Consensus 352 -~lL~h~~~~~~It----hgG~~s~~Eal~~GvP~i~~P~~~DQ~~na~~~~~~G~G~~l~~~~~~~~~l~~ai~~ll-~ 425 (513)
+++ .+++++|. -|+.+++.||+++|+|+|+.+. ..+...+++.+.|...+ ..+.+++.++|.+++ |
T Consensus 270 ~~~~--~~~di~i~~~~~~~~~~~~~Ea~~~g~pvI~~~~----~~~~~~~~~~~~g~~~~--~~~~~~l~~~i~~~~~~ 341 (374)
T cd03801 270 PALY--AAADVFVLPSLYEGFGLVLLEAMAAGLPVVASDV----GGIPEVVEDGETGLLVP--PGDPEALAEAILRLLDD 341 (374)
T ss_pred HHHH--HhcCEEEecchhccccchHHHHHHcCCcEEEeCC----CChhHHhcCCcceEEeC--CCCHHHHHHHHHHHHcC
Confidence 456 66788884 3556789999999999999865 34566666678888887 335899999999999 8
Q ss_pred HHHHHHHHHHHH
Q psy14941 426 PEYKENAEDLGT 437 (513)
Q Consensus 426 ~~y~~~a~~~~~ 437 (513)
++.++++.+-+.
T Consensus 342 ~~~~~~~~~~~~ 353 (374)
T cd03801 342 PELRRRLGEAAR 353 (374)
T ss_pred hHHHHHHHHHHH
Confidence 876666555554
No 52
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=99.22 E-value=8.2e-09 Score=101.61 Aligned_cols=139 Identities=14% Similarity=0.245 Sum_probs=89.0
Q ss_pred CCceEEEEeCcccccCCCCHHHHHHHHHHHhcC----CC-eEEEEEcCCCC-------CC-CCCCCcEEEecCCCc-ccc
Q psy14941 288 HNGVIYFSMGSMLKTSSFPPDKFKAFLKAFSKI----PQ-RVLWKFEDNDT-------SI-FKPYKNIRTSSWMPQ-RDI 353 (513)
Q Consensus 288 ~~~~v~vs~Gs~~~~~~~~~~~~~~~~~~~~~~----~~-~~i~~~~~~~~-------~~-~~~~~nv~~~~~~pq-~~l 353 (513)
.++.+++..|+.. +.+-...+++++.++ +. ++++.-.+... .. .. .+++.+.++..+ .++
T Consensus 176 ~~~~~i~~~g~~~-----~~K~~~~l~~~~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~-~~~v~~~g~~~~~~~~ 249 (348)
T cd03820 176 LKSKRILAVGRLV-----PQKGFDLLIEAWAKIAKKHPDWKLRIVGDGPEREALEALIKELGL-EDRVILLGFTKNIEEY 249 (348)
T ss_pred CCCcEEEEEEeec-----cccCHHHHHHHHHHHHhcCCCeEEEEEeCCCCHHHHHHHHHHcCC-CCeEEEcCCcchHHHH
Confidence 3456677778765 233344455555443 33 55554332221 01 13 578888887433 366
Q ss_pred ccCCCceEEeccCC----cccHHHHHHcCcceEeeccccCcHHHHHHHHHcC-cEEEeccCCCCHHHHHHHHHHhc-CHH
Q psy14941 354 FAHPNMKLFISHGG----LLGITEAVYEGIPVLGIPVFGDQWANIKKLESLK-AGKLLPYLEITEETVSDALKIVL-SPE 427 (513)
Q Consensus 354 L~h~~~~~~IthgG----~~s~~Eal~~GvP~i~~P~~~DQ~~na~~~~~~G-~G~~l~~~~~~~~~l~~ai~~ll-~~~ 427 (513)
+ .+++++|.... .+++.||+++|+|+|+.+..+.+ ..+...| .|..++ .-+.+++.++|.+++ |++
T Consensus 250 ~--~~ad~~i~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~----~~~~~~~~~g~~~~--~~~~~~~~~~i~~ll~~~~ 321 (348)
T cd03820 250 Y--AKASIFVLTSRFEGFPMVLLEAMAFGLPVISFDCPTGP----SEIIEDGVNGLLVP--NGDVEALAEALLRLMEDEE 321 (348)
T ss_pred H--HhCCEEEeCccccccCHHHHHHHHcCCCEEEecCCCch----HhhhccCcceEEeC--CCCHHHHHHHHHHHHcCHH
Confidence 6 67888886642 47899999999999998654433 2344445 888887 346799999999999 988
Q ss_pred HHHHHHHHHHHHh
Q psy14941 428 YKENAEDLGTRFR 440 (513)
Q Consensus 428 y~~~a~~~~~~~~ 440 (513)
.++++.+-+....
T Consensus 322 ~~~~~~~~~~~~~ 334 (348)
T cd03820 322 LRKRMGANARESA 334 (348)
T ss_pred HHHHHHHHHHHHH
Confidence 8777776665443
No 53
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.21 E-value=8.3e-09 Score=103.42 Aligned_cols=152 Identities=13% Similarity=0.121 Sum_probs=97.1
Q ss_pred CCceEEEEeCcccccCCCCHHHHHHHHHHHhc----CCCeEEEEEcCCCC---------CCCCCCCcEEEecCCCcc-cc
Q psy14941 288 HNGVIYFSMGSMLKTSSFPPDKFKAFLKAFSK----IPQRVLWKFEDNDT---------SIFKPYKNIRTSSWMPQR-DI 353 (513)
Q Consensus 288 ~~~~v~vs~Gs~~~~~~~~~~~~~~~~~~~~~----~~~~~i~~~~~~~~---------~~~~~~~nv~~~~~~pq~-~l 353 (513)
.++.+++.+|... +.+....+++++.. .+.++++.-.+.+. .+ . .++|.+.++.++. ++
T Consensus 195 ~~~~~il~~g~l~-----~~K~~~~li~a~~~l~~~~~~~l~i~G~g~~~~~~~~~~~~~~-~-~~~v~~~g~~~~~~~~ 267 (371)
T cd04962 195 EGEKVLIHISNFR-----PVKRIDDVIRIFAKVRKEVPARLLLVGDGPERSPAERLARELG-L-QDDVLFLGKQDHVEEL 267 (371)
T ss_pred CCCeEEEEecccc-----cccCHHHHHHHHHHHHhcCCceEEEEcCCcCHHHHHHHHHHcC-C-CceEEEecCcccHHHH
Confidence 4566777788775 34444555555543 34466665443221 12 3 5689999987653 66
Q ss_pred ccCCCceEEecc----CCcccHHHHHHcCcceEeeccccCcHHHHHHHHHcCcEEEeccCCCCHHHHHHHHHHhc-CHHH
Q psy14941 354 FAHPNMKLFISH----GGLLGITEAVYEGIPVLGIPVFGDQWANIKKLESLKAGKLLPYLEITEETVSDALKIVL-SPEY 428 (513)
Q Consensus 354 L~h~~~~~~Ith----gG~~s~~Eal~~GvP~i~~P~~~DQ~~na~~~~~~G~G~~l~~~~~~~~~l~~ai~~ll-~~~y 428 (513)
+ ..+++++.- |...++.||+++|+|+|+.+.. ..+..+++...|..++. -+.+++.+++.+++ |+..
T Consensus 268 ~--~~~d~~v~ps~~E~~~~~~~EAma~g~PvI~s~~~----~~~e~i~~~~~G~~~~~--~~~~~l~~~i~~l~~~~~~ 339 (371)
T cd04962 268 L--SIADLFLLPSEKESFGLAALEAMACGVPVVASNAG----GIPEVVKHGETGFLVDV--GDVEAMAEYALSLLEDDEL 339 (371)
T ss_pred H--HhcCEEEeCCCcCCCccHHHHHHHcCCCEEEeCCC----CchhhhcCCCceEEcCC--CCHHHHHHHHHHHHhCHHH
Confidence 6 677888833 4457999999999999997543 35556666667887764 37899999999999 8876
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHHH
Q psy14941 429 KENAEDLGTRFRDRPQSPLEVAIYWI 454 (513)
Q Consensus 429 ~~~a~~~~~~~~~~~~~~~~~a~~~i 454 (513)
++++.+-+.....+.++....+..+.
T Consensus 340 ~~~~~~~~~~~~~~~fs~~~~~~~~~ 365 (371)
T cd04962 340 WQEFSRAARNRAAERFDSERIVPQYE 365 (371)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 66665555544222235444443333
No 54
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=99.14 E-value=3.8e-08 Score=99.51 Aligned_cols=90 Identities=16% Similarity=0.214 Sum_probs=66.0
Q ss_pred CCcEEEecCCCcc---ccccCCCceEEeccCC----cccHHHHHHcCcceEeeccccCcHHHHHHHHHcCcEEEeccCCC
Q psy14941 339 YKNIRTSSWMPQR---DIFAHPNMKLFISHGG----LLGITEAVYEGIPVLGIPVFGDQWANIKKLESLKAGKLLPYLEI 411 (513)
Q Consensus 339 ~~nv~~~~~~pq~---~lL~h~~~~~~IthgG----~~s~~Eal~~GvP~i~~P~~~DQ~~na~~~~~~G~G~~l~~~~~ 411 (513)
.+||.+.+++|+. +++ ..+++++.... ..++.||+++|+|+|+.-..+ ....+.+.+.|...+ .
T Consensus 279 ~~~V~f~g~~~~~~~~~~l--~~ad~~l~~s~~E~~g~~~lEAma~G~PvI~s~~~~----~~e~i~~~~~g~~~~--~- 349 (392)
T cd03805 279 EDQVIFLPSISDSQKELLL--SSARALLYTPSNEHFGIVPLEAMYAGKPVIACNSGG----PLETVVDGETGFLCE--P- 349 (392)
T ss_pred CceEEEeCCCChHHHHHHH--hhCeEEEECCCcCCCCchHHHHHHcCCCEEEECCCC----cHHHhccCCceEEeC--C-
Confidence 5799999999986 456 67788874322 367899999999999985433 344556666788775 3
Q ss_pred CHHHHHHHHHHhc-CHHHHHHHHHHHH
Q psy14941 412 TEETVSDALKIVL-SPEYKENAEDLGT 437 (513)
Q Consensus 412 ~~~~l~~ai~~ll-~~~y~~~a~~~~~ 437 (513)
+.+++.++|.+++ |++.++++.+-+.
T Consensus 350 ~~~~~a~~i~~l~~~~~~~~~~~~~a~ 376 (392)
T cd03805 350 TPEEFAEAMLKLANDPDLADRMGAAGR 376 (392)
T ss_pred CHHHHHHHHHHHHhChHHHHHHHHHHH
Confidence 7899999999999 8766655544443
No 55
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=99.14 E-value=7e-09 Score=103.38 Aligned_cols=134 Identities=17% Similarity=0.314 Sum_probs=86.4
Q ss_pred CCceEEEEeCcccccCCCCHHHHHHHHHHHhcC----C-CeEEEEEcCCCC---------CCCCCCCcEEEecCCCccc-
Q psy14941 288 HNGVIYFSMGSMLKTSSFPPDKFKAFLKAFSKI----P-QRVLWKFEDNDT---------SIFKPYKNIRTSSWMPQRD- 352 (513)
Q Consensus 288 ~~~~v~vs~Gs~~~~~~~~~~~~~~~~~~~~~~----~-~~~i~~~~~~~~---------~~~~~~~nv~~~~~~pq~~- 352 (513)
+++.+++..|+... .+..+.+++++..+ + .++++.-++... .+ . .+|+.+.+++|+.+
T Consensus 200 ~~~~~i~~~G~~~~-----~k~~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~-~-~~~v~~~g~~~~~~~ 272 (374)
T cd03817 200 EDEPVLLYVGRLAK-----EKNIDFLIRAFARLLKEEPDVKLVIVGDGPEREELEELARELG-L-ADRVIFTGFVPREEL 272 (374)
T ss_pred CCCeEEEEEeeeec-----ccCHHHHHHHHHHHHHhCCCeEEEEEeCCchHHHHHHHHHHcC-C-CCcEEEeccCChHHH
Confidence 45667777787652 22234444444432 2 355555433211 12 4 68999999999864
Q ss_pred --cccCCCceEEeccC----CcccHHHHHHcCcceEeeccccCcHHHHHHHHHcCcEEEeccCCCCHHHHHHHHHHhc-C
Q psy14941 353 --IFAHPNMKLFISHG----GLLGITEAVYEGIPVLGIPVFGDQWANIKKLESLKAGKLLPYLEITEETVSDALKIVL-S 425 (513)
Q Consensus 353 --lL~h~~~~~~Ithg----G~~s~~Eal~~GvP~i~~P~~~DQ~~na~~~~~~G~G~~l~~~~~~~~~l~~ai~~ll-~ 425 (513)
++ .++++++..+ +.+++.||+++|+|+|+.+. ...+..+++.+.|..++..+ . ++.+++.+++ |
T Consensus 273 ~~~~--~~ad~~l~~s~~e~~~~~~~Ea~~~g~PvI~~~~----~~~~~~i~~~~~g~~~~~~~--~-~~~~~i~~l~~~ 343 (374)
T cd03817 273 PDYY--KAADLFVFASTTETQGLVLLEAMAAGLPVVAVDA----PGLPDLVADGENGFLFPPGD--E-ALAEALLRLLQD 343 (374)
T ss_pred HHHH--HHcCEEEecccccCcChHHHHHHHcCCcEEEeCC----CChhhheecCceeEEeCCCC--H-HHHHHHHHHHhC
Confidence 46 5678888443 34789999999999999754 33556666778888887432 2 8999999999 8
Q ss_pred HHHHHHHHHHHH
Q psy14941 426 PEYKENAEDLGT 437 (513)
Q Consensus 426 ~~y~~~a~~~~~ 437 (513)
++..+.+.+-+.
T Consensus 344 ~~~~~~~~~~~~ 355 (374)
T cd03817 344 PELRRRLSKNAE 355 (374)
T ss_pred hHHHHHHHHHHH
Confidence 765444443333
No 56
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=99.13 E-value=4.2e-08 Score=99.23 Aligned_cols=137 Identities=18% Similarity=0.259 Sum_probs=92.6
Q ss_pred CCceEEEEeCcccccCCCCHHHHHHHHHHHhcCC-----CeEEEEEcCCCC---------------CCCCCCCcEEEecC
Q psy14941 288 HNGVIYFSMGSMLKTSSFPPDKFKAFLKAFSKIP-----QRVLWKFEDNDT---------------SIFKPYKNIRTSSW 347 (513)
Q Consensus 288 ~~~~v~vs~Gs~~~~~~~~~~~~~~~~~~~~~~~-----~~~i~~~~~~~~---------------~~~~~~~nv~~~~~ 347 (513)
.+..+++..|+.. ..+....+++++..+. .++++..++... .+ . .+|+.+.++
T Consensus 218 ~~~~~i~~~gr~~-----~~k~~~~ll~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~-~-~~~v~~~g~ 290 (398)
T cd03800 218 PDKPRILAVGRLD-----PRKGIDTLIRAYAELPELRERANLVIVGGPRDDILAMDEEELRELARELG-V-IDRVDFPGR 290 (398)
T ss_pred CCCcEEEEEcccc-----cccCHHHHHHHHHHHHHhCCCeEEEEEECCCCcchhhhhHHHHHHHHhcC-C-CceEEEecc
Confidence 4456777888875 2333455555555442 356665443221 11 3 478999999
Q ss_pred CCccc---cccCCCceEEecc----CCcccHHHHHHcCcceEeeccccCcHHHHHHHHHcCcEEEeccCCCCHHHHHHHH
Q psy14941 348 MPQRD---IFAHPNMKLFISH----GGLLGITEAVYEGIPVLGIPVFGDQWANIKKLESLKAGKLLPYLEITEETVSDAL 420 (513)
Q Consensus 348 ~pq~~---lL~h~~~~~~Ith----gG~~s~~Eal~~GvP~i~~P~~~DQ~~na~~~~~~G~G~~l~~~~~~~~~l~~ai 420 (513)
+|+.+ ++ ..+++++.. |-..++.||+++|+|+|+.+..+ ....+++.+.|..++.. +.+++.++|
T Consensus 291 ~~~~~~~~~~--~~adi~l~ps~~e~~~~~l~Ea~a~G~Pvi~s~~~~----~~e~i~~~~~g~~~~~~--~~~~l~~~i 362 (398)
T cd03800 291 VSREDLPALY--RAADVFVNPALYEPFGLTALEAMACGLPVVATAVGG----PRDIVVDGVTGLLVDPR--DPEALAAAL 362 (398)
T ss_pred CCHHHHHHHH--HhCCEEEecccccccCcHHHHHHhcCCCEEECCCCC----HHHHccCCCCeEEeCCC--CHHHHHHHH
Confidence 99875 46 668888854 22468999999999999876443 55567777889988743 689999999
Q ss_pred HHhc-CHHHHHHHHHHHHHH
Q psy14941 421 KIVL-SPEYKENAEDLGTRF 439 (513)
Q Consensus 421 ~~ll-~~~y~~~a~~~~~~~ 439 (513)
.+++ |++.++++.+-+...
T Consensus 363 ~~l~~~~~~~~~~~~~a~~~ 382 (398)
T cd03800 363 RRLLTDPALRRRLSRAGLRR 382 (398)
T ss_pred HHHHhCHHHHHHHHHHHHHH
Confidence 9999 877666555544433
No 57
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.12 E-value=3.4e-08 Score=98.24 Aligned_cols=137 Identities=14% Similarity=0.196 Sum_probs=94.5
Q ss_pred CCceEEEEeCcccccCCCCHHHHHHHHHHHhcCC-CeEEEEEcCCCC---------CCCCCCCcEEEecCCCcc---ccc
Q psy14941 288 HNGVIYFSMGSMLKTSSFPPDKFKAFLKAFSKIP-QRVLWKFEDNDT---------SIFKPYKNIRTSSWMPQR---DIF 354 (513)
Q Consensus 288 ~~~~v~vs~Gs~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~---------~~~~~~~nv~~~~~~pq~---~lL 354 (513)
.++.+++..|+.. +.+....+++++.++. ..+++..++... .+ . .+||.+.+|+|+. .++
T Consensus 189 ~~~~~i~~~G~~~-----~~K~~~~li~a~~~l~~~~l~i~G~g~~~~~~~~~~~~~~-~-~~~V~~~g~v~~~~~~~~~ 261 (357)
T cd03795 189 AGRPFFLFVGRLV-----YYKGLDVLLEAAAALPDAPLVIVGEGPLEAELEALAAALG-L-LDRVRFLGRLDDEEKAALL 261 (357)
T ss_pred CCCcEEEEecccc-----cccCHHHHHHHHHhccCcEEEEEeCChhHHHHHHHHHhcC-C-cceEEEcCCCCHHHHHHHH
Confidence 4566777888875 4455677888888777 455555433211 12 4 6899999999976 455
Q ss_pred cCCCceEEec-----cCC-cccHHHHHHcCcceEeeccccCcHHHHHHHHH-cCcEEEeccCCCCHHHHHHHHHHhc-CH
Q psy14941 355 AHPNMKLFIS-----HGG-LLGITEAVYEGIPVLGIPVFGDQWANIKKLES-LKAGKLLPYLEITEETVSDALKIVL-SP 426 (513)
Q Consensus 355 ~h~~~~~~It-----hgG-~~s~~Eal~~GvP~i~~P~~~DQ~~na~~~~~-~G~G~~l~~~~~~~~~l~~ai~~ll-~~ 426 (513)
.++++++. +.| ..++.||+++|+|+|+....+.. ..+.. .+.|...+ .-+.+++.++|.+++ |+
T Consensus 262 --~~ad~~i~ps~~~~e~~g~~~~Ea~~~g~Pvi~~~~~~~~----~~i~~~~~~g~~~~--~~d~~~~~~~i~~l~~~~ 333 (357)
T cd03795 262 --AACDVFVFPSVERSEAFGIVLLEAMAFGKPVISTEIGTGG----SYVNLHGVTGLVVP--PGDPAALAEAIRRLLEDP 333 (357)
T ss_pred --HhCCEEEeCCcccccccchHHHHHHHcCCCEEecCCCCch----hHHhhCCCceEEeC--CCCHHHHHHHHHHHHHCH
Confidence 66788772 223 35799999999999998655443 33333 67888876 337999999999999 88
Q ss_pred HHHHHHHHHHHHH
Q psy14941 427 EYKENAEDLGTRF 439 (513)
Q Consensus 427 ~y~~~a~~~~~~~ 439 (513)
+.++++.+-+...
T Consensus 334 ~~~~~~~~~~~~~ 346 (357)
T cd03795 334 ELRERLGEAARER 346 (357)
T ss_pred HHHHHHHHHHHHH
Confidence 7666666555443
No 58
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=99.08 E-value=5.3e-08 Score=96.98 Aligned_cols=136 Identities=16% Similarity=0.230 Sum_probs=89.1
Q ss_pred CCceEEEEeCcccccCCCCHHHHHHHHHHHhcCC----C-eEEEEEcCCCC---------CC-CCCCCcEEEecCCCccc
Q psy14941 288 HNGVIYFSMGSMLKTSSFPPDKFKAFLKAFSKIP----Q-RVLWKFEDNDT---------SI-FKPYKNIRTSSWMPQRD 352 (513)
Q Consensus 288 ~~~~v~vs~Gs~~~~~~~~~~~~~~~~~~~~~~~----~-~~i~~~~~~~~---------~~-~~~~~nv~~~~~~pq~~ 352 (513)
.++.+++..|+.. +.+-...+++++.++. . ++++.-.++.. .. .. .+||.+.+|+++.+
T Consensus 201 ~~~~~i~~~G~~~-----~~K~~~~li~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~-~~~v~~~g~~~~~~ 274 (375)
T cd03821 201 PDKRIILFLGRLH-----PKKGLDLLIEAFAKLAERFPDWHLVIAGPDEGGYRAELKQIAAALGL-EDRVTFTGMLYGED 274 (375)
T ss_pred CCCcEEEEEeCcc-----hhcCHHHHHHHHHHhhhhcCCeEEEEECCCCcchHHHHHHHHHhcCc-cceEEEcCCCChHH
Confidence 4566777788875 3344455555555432 2 44443322110 11 13 68999999999654
Q ss_pred ---cccCCCceEEeccCC----cccHHHHHHcCcceEeeccccCcHHHHHHHHHcCcEEEeccCCCCHHHHHHHHHHhc-
Q psy14941 353 ---IFAHPNMKLFISHGG----LLGITEAVYEGIPVLGIPVFGDQWANIKKLESLKAGKLLPYLEITEETVSDALKIVL- 424 (513)
Q Consensus 353 ---lL~h~~~~~~IthgG----~~s~~Eal~~GvP~i~~P~~~DQ~~na~~~~~~G~G~~l~~~~~~~~~l~~ai~~ll- 424 (513)
++ .++++++.-.- .+++.||+++|+|+|+.+..+ ....+.. +.|...+. +.+++.++|.+++
T Consensus 275 ~~~~~--~~adv~v~ps~~e~~~~~~~Eama~G~PvI~~~~~~----~~~~~~~-~~~~~~~~---~~~~~~~~i~~l~~ 344 (375)
T cd03821 275 KAAAL--ADADLFVLPSHSENFGIVVAEALACGTPVVTTDKVP----WQELIEY-GCGWVVDD---DVDALAAALRRALE 344 (375)
T ss_pred HHHHH--hhCCEEEeccccCCCCcHHHHHHhcCCCEEEcCCCC----HHHHhhc-CceEEeCC---ChHHHHHHHHHHHh
Confidence 46 66788775432 478999999999999986433 4444555 88887763 3499999999999
Q ss_pred CHHHHHHHHHHHHHH
Q psy14941 425 SPEYKENAEDLGTRF 439 (513)
Q Consensus 425 ~~~y~~~a~~~~~~~ 439 (513)
|++.++++.+-+...
T Consensus 345 ~~~~~~~~~~~~~~~ 359 (375)
T cd03821 345 LPQRLKAMGENGRAL 359 (375)
T ss_pred CHHHHHHHHHHHHHH
Confidence 877666666655555
No 59
>PRK10307 putative glycosyl transferase; Provisional
Probab=99.05 E-value=7.1e-07 Score=90.91 Aligned_cols=144 Identities=11% Similarity=0.118 Sum_probs=88.9
Q ss_pred CCceEEEEeCcccccCCCCHHHHHHHHHHHhcC---C-CeEEEEEcCCCCC-------CCCCCCcEEEecCCCcc---cc
Q psy14941 288 HNGVIYFSMGSMLKTSSFPPDKFKAFLKAFSKI---P-QRVLWKFEDNDTS-------IFKPYKNIRTSSWMPQR---DI 353 (513)
Q Consensus 288 ~~~~v~vs~Gs~~~~~~~~~~~~~~~~~~~~~~---~-~~~i~~~~~~~~~-------~~~~~~nv~~~~~~pq~---~l 353 (513)
+++.+++..|+.. +.+-.+.+++++..+ + .++++.-++.... ... .+||.+.+++|+. ++
T Consensus 227 ~~~~~i~~~G~l~-----~~kg~~~li~a~~~l~~~~~~~l~ivG~g~~~~~l~~~~~~~~-l~~v~f~G~~~~~~~~~~ 300 (412)
T PRK10307 227 DGKKIVLYSGNIG-----EKQGLELVIDAARRLRDRPDLIFVICGQGGGKARLEKMAQCRG-LPNVHFLPLQPYDRLPAL 300 (412)
T ss_pred CCCEEEEEcCccc-----cccCHHHHHHHHHHhccCCCeEEEEECCChhHHHHHHHHHHcC-CCceEEeCCCCHHHHHHH
Confidence 3456777788876 445566677776654 2 2455432222111 101 3589999999876 45
Q ss_pred ccCCCceEEec--c-CC-----cccHHHHHHcCcceEeeccccCcHHHHHHHHHcCcEEEeccCCCCHHHHHHHHHHhc-
Q psy14941 354 FAHPNMKLFIS--H-GG-----LLGITEAVYEGIPVLGIPVFGDQWANIKKLESLKAGKLLPYLEITEETVSDALKIVL- 424 (513)
Q Consensus 354 L~h~~~~~~It--h-gG-----~~s~~Eal~~GvP~i~~P~~~DQ~~na~~~~~~G~G~~l~~~~~~~~~l~~ai~~ll- 424 (513)
+ ..+|+++. . ++ -+.+.|++++|+|+|+....+.. ....++ +.|+.++. -+.+++.++|.+++
T Consensus 301 ~--~~aDi~v~ps~~e~~~~~~p~kl~eama~G~PVi~s~~~g~~--~~~~i~--~~G~~~~~--~d~~~la~~i~~l~~ 372 (412)
T PRK10307 301 L--KMADCHLLPQKAGAADLVLPSKLTNMLASGRNVVATAEPGTE--LGQLVE--GIGVCVEP--ESVEALVAAIAALAR 372 (412)
T ss_pred H--HhcCEeEEeeccCcccccCcHHHHHHHHcCCCEEEEeCCCch--HHHHHh--CCcEEeCC--CCHHHHHHHHHHHHh
Confidence 6 55566543 2 22 12368999999999998754421 112333 78888874 36899999999999
Q ss_pred CHHHHHHHHHHHHHHhcCCCC
Q psy14941 425 SPEYKENAEDLGTRFRDRPQS 445 (513)
Q Consensus 425 ~~~y~~~a~~~~~~~~~~~~~ 445 (513)
|+..++++.+-+.....+.++
T Consensus 373 ~~~~~~~~~~~a~~~~~~~fs 393 (412)
T PRK10307 373 QALLRPKLGTVAREYAERTLD 393 (412)
T ss_pred CHHHHHHHHHHHHHHHHHHcC
Confidence 887666666655554333334
No 60
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=99.05 E-value=1.5e-07 Score=93.65 Aligned_cols=104 Identities=17% Similarity=0.200 Sum_probs=72.3
Q ss_pred CCcEEEecC-CCcc---ccccCCCceEEecc------CCcccHHHHHHcCcceEeeccccCcHHHHHHHHHcCcEEEecc
Q psy14941 339 YKNIRTSSW-MPQR---DIFAHPNMKLFISH------GGLLGITEAVYEGIPVLGIPVFGDQWANIKKLESLKAGKLLPY 408 (513)
Q Consensus 339 ~~nv~~~~~-~pq~---~lL~h~~~~~~Ith------gG~~s~~Eal~~GvP~i~~P~~~DQ~~na~~~~~~G~G~~l~~ 408 (513)
.+||.+.+. +|+. +++ ..+++++.- |..+++.||+++|+|+|+.+..+ ...+...+.|..++.
T Consensus 246 ~~~v~~~~~~~~~~~~~~~~--~~ad~~v~ps~~e~~~~~~~~~Ea~a~G~PvI~~~~~~-----~~~i~~~~~g~~~~~ 318 (366)
T cd03822 246 ADRVIFINRYLPDEELPELF--SAADVVVLPYRSADQTQSGVLAYAIGFGKPVISTPVGH-----AEEVLDGGTGLLVPP 318 (366)
T ss_pred CCcEEEecCcCCHHHHHHHH--hhcCEEEecccccccccchHHHHHHHcCCCEEecCCCC-----hheeeeCCCcEEEcC
Confidence 578888864 8865 566 678888842 33468999999999999987654 334556678888774
Q ss_pred CCCCHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCCCChHHHHHH
Q psy14941 409 LEITEETVSDALKIVL-SPEYKENAEDLGTRFRDRPQSPLEVAIY 452 (513)
Q Consensus 409 ~~~~~~~l~~ai~~ll-~~~y~~~a~~~~~~~~~~~~~~~~~a~~ 452 (513)
. +.+++.++|.+++ |++.++++.+-+.....+ .+....+-.
T Consensus 319 ~--d~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~-~s~~~~~~~ 360 (366)
T cd03822 319 G--DPAALAEAIRRLLADPELAQALRARAREYARA-MSWERVAER 360 (366)
T ss_pred C--CHHHHHHHHHHHHcChHHHHHHHHHHHHHHhh-CCHHHHHHH
Confidence 3 6899999999999 866666555555554444 454444333
No 61
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=99.03 E-value=1.9e-07 Score=95.04 Aligned_cols=137 Identities=15% Similarity=0.196 Sum_probs=86.2
Q ss_pred CCceEEEEeCcccccCCCCHHHHHHHHHHHhcC----------CC-eEEEEEcCCCC-------CCCCCCCcEEEe-cCC
Q psy14941 288 HNGVIYFSMGSMLKTSSFPPDKFKAFLKAFSKI----------PQ-RVLWKFEDNDT-------SIFKPYKNIRTS-SWM 348 (513)
Q Consensus 288 ~~~~v~vs~Gs~~~~~~~~~~~~~~~~~~~~~~----------~~-~~i~~~~~~~~-------~~~~~~~nv~~~-~~~ 348 (513)
++..++++.|... +.+....+++|+..+ +. ++++.-++... .+ .+-+|+.+. +|+
T Consensus 230 ~~~~vi~~~grl~-----~~K~~~~li~A~~~l~~~~~~~~~~~~i~l~ivG~G~~~~~l~~~~~~-~~l~~~~~~~g~~ 303 (415)
T cd03816 230 ERPALLVSSTSWT-----PDEDFGILLDALVAYEKSAATGPKLPKLLCIITGKGPLKEKYLERIKE-LKLKKVTIRTPWL 303 (415)
T ss_pred CCceEEEEecccc-----CCCCHHHHHHHHHHHHHhhcccccCCCEEEEEEecCccHHHHHHHHHH-cCCCcEEEEcCcC
Confidence 3456677778765 334455566665543 22 43333222211 11 102466654 688
Q ss_pred Ccc---ccccCCCceEEec-c----C--CcccHHHHHHcCcceEeeccccCcHHHHHHHHHcCcEEEeccCCCCHHHHHH
Q psy14941 349 PQR---DIFAHPNMKLFIS-H----G--GLLGITEAVYEGIPVLGIPVFGDQWANIKKLESLKAGKLLPYLEITEETVSD 418 (513)
Q Consensus 349 pq~---~lL~h~~~~~~It-h----g--G~~s~~Eal~~GvP~i~~P~~~DQ~~na~~~~~~G~G~~l~~~~~~~~~l~~ 418 (513)
|.. ++| ..+++++. + | -.+++.||+++|+|+|+... ......+++.+.|..++ +.+++.+
T Consensus 304 ~~~~~~~~l--~~aDv~v~~~~~~~~~~~p~~~~Eama~G~PVI~s~~----~~~~eiv~~~~~G~lv~----d~~~la~ 373 (415)
T cd03816 304 SAEDYPKLL--ASADLGVSLHTSSSGLDLPMKVVDMFGCGLPVCALDF----KCIDELVKHGENGLVFG----DSEELAE 373 (415)
T ss_pred CHHHHHHHH--HhCCEEEEccccccccCCcHHHHHHHHcCCCEEEeCC----CCHHHHhcCCCCEEEEC----CHHHHHH
Confidence 865 446 67888873 1 1 13469999999999999743 34566777778898884 7899999
Q ss_pred HHHHhc-C---HHHHHHHHHHHHHHh
Q psy14941 419 ALKIVL-S---PEYKENAEDLGTRFR 440 (513)
Q Consensus 419 ai~~ll-~---~~y~~~a~~~~~~~~ 440 (513)
+|.+++ | ++-++++.+-++...
T Consensus 374 ~i~~ll~~~~~~~~~~~m~~~~~~~~ 399 (415)
T cd03816 374 QLIDLLSNFPNRGKLNSLKKGAQEES 399 (415)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhh
Confidence 999999 8 666666655555444
No 62
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=99.02 E-value=5.5e-08 Score=96.65 Aligned_cols=134 Identities=20% Similarity=0.267 Sum_probs=86.1
Q ss_pred CCceEEEEeCcccccCCCCHHHHHHHHHHHhcCC-----CeEEEEEcCCCCC---------CCCCCCcEEEecCCCcc--
Q psy14941 288 HNGVIYFSMGSMLKTSSFPPDKFKAFLKAFSKIP-----QRVLWKFEDNDTS---------IFKPYKNIRTSSWMPQR-- 351 (513)
Q Consensus 288 ~~~~v~vs~Gs~~~~~~~~~~~~~~~~~~~~~~~-----~~~i~~~~~~~~~---------~~~~~~nv~~~~~~pq~-- 351 (513)
.++..++.+|+.. +.+-...+++++.++. .++++.-.++... + . ++||.+.+++|+.
T Consensus 177 ~~~~~i~~~g~~~-----~~k~~~~l~~~~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~-~-~~~v~~~g~~~~~~l 249 (355)
T cd03799 177 GEPLRILSVGRLV-----EKKGLDYLLEALALLKDRGIDFRLDIVGDGPLRDELEALIAELG-L-EDRVTLLGAKSQEEV 249 (355)
T ss_pred CCCeEEEEEeeec-----cccCHHHHHHHHHHHhhcCCCeEEEEEECCccHHHHHHHHHHcC-C-CCeEEECCcCChHHH
Confidence 3456677778764 2333445555554432 2455543332211 2 4 6899999999866
Q ss_pred -ccccCCCceEEec----------cCCcccHHHHHHcCcceEeeccccCcHHHHHHHHHcCcEEEeccCCCCHHHHHHHH
Q psy14941 352 -DIFAHPNMKLFIS----------HGGLLGITEAVYEGIPVLGIPVFGDQWANIKKLESLKAGKLLPYLEITEETVSDAL 420 (513)
Q Consensus 352 -~lL~h~~~~~~It----------hgG~~s~~Eal~~GvP~i~~P~~~DQ~~na~~~~~~G~G~~l~~~~~~~~~l~~ai 420 (513)
.++ .++++++. -|..+++.||+++|+|+|+.+..+ ....+++...|..++. -+.+++.++|
T Consensus 250 ~~~~--~~adi~l~~s~~~~~~~~e~~~~~~~Ea~a~G~Pvi~~~~~~----~~~~i~~~~~g~~~~~--~~~~~l~~~i 321 (355)
T cd03799 250 RELL--RAADLFVLPSVTAADGDREGLPVVLMEAMAMGLPVISTDVSG----IPELVEDGETGLLVPP--GDPEALADAI 321 (355)
T ss_pred HHHH--HhCCEEEecceecCCCCccCccHHHHHHHHcCCCEEecCCCC----cchhhhCCCceEEeCC--CCHHHHHHHH
Confidence 455 56788777 344578999999999999976533 2234444558888863 3789999999
Q ss_pred HHhc-CHHHHHHHHHHH
Q psy14941 421 KIVL-SPEYKENAEDLG 436 (513)
Q Consensus 421 ~~ll-~~~y~~~a~~~~ 436 (513)
.+++ |+...+++.+-+
T Consensus 322 ~~~~~~~~~~~~~~~~a 338 (355)
T cd03799 322 ERLLDDPELRREMGEAG 338 (355)
T ss_pred HHHHhCHHHHHHHHHHH
Confidence 9999 876554444443
No 63
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=99.02 E-value=3.5e-08 Score=97.24 Aligned_cols=132 Identities=20% Similarity=0.264 Sum_probs=86.2
Q ss_pred CCceEEEEeCcccccCCCCHHHHHHHHHHHhcCC-----CeEEEEEcCCC---------CCCCCCCCcEEEecCCCcc-c
Q psy14941 288 HNGVIYFSMGSMLKTSSFPPDKFKAFLKAFSKIP-----QRVLWKFEDND---------TSIFKPYKNIRTSSWMPQR-D 352 (513)
Q Consensus 288 ~~~~v~vs~Gs~~~~~~~~~~~~~~~~~~~~~~~-----~~~i~~~~~~~---------~~~~~~~~nv~~~~~~pq~-~ 352 (513)
.++.+++..|+.. +.+....+++++..+. .++++..++.. ..+ . .+++.+.++.++. +
T Consensus 187 ~~~~~i~~~g~~~-----~~k~~~~~i~~~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~-~-~~~v~~~g~~~~~~~ 259 (353)
T cd03811 187 PDGPVILAVGRLS-----PQKGFDTLIRAFALLRKEGPDARLVILGDGPLREELEALAKELG-L-ADRVHFLGFQSNPYP 259 (353)
T ss_pred CCceEEEEEecch-----hhcChHHHHHHHHHhhhcCCCceEEEEcCCccHHHHHHHHHhcC-C-CccEEEecccCCHHH
Confidence 4667788888875 3344555666666543 24444432221 012 3 6789999997764 6
Q ss_pred cccCCCceEEecc----CCcccHHHHHHcCcceEeeccccCcHHHHHHHHHcCcEEEeccCCCCHHHH---HHHHHHhc-
Q psy14941 353 IFAHPNMKLFISH----GGLLGITEAVYEGIPVLGIPVFGDQWANIKKLESLKAGKLLPYLEITEETV---SDALKIVL- 424 (513)
Q Consensus 353 lL~h~~~~~~Ith----gG~~s~~Eal~~GvP~i~~P~~~DQ~~na~~~~~~G~G~~l~~~~~~~~~l---~~ai~~ll- 424 (513)
++ ..++++|.- |..+++.||+++|+|+|+.... .....+++.+.|...+.. +.+.+ .+++.++.
T Consensus 260 ~~--~~~d~~i~ps~~e~~~~~~~Ea~~~G~PvI~~~~~----~~~e~i~~~~~g~~~~~~--~~~~~~~~~~~i~~~~~ 331 (353)
T cd03811 260 YL--KAADLFVLSSRYEGFPNVLLEAMALGTPVVATDCP----GPREILEDGENGLLVPVG--DEAALAAAALALLDLLL 331 (353)
T ss_pred HH--HhCCEEEeCcccCCCCcHHHHHHHhCCCEEEcCCC----ChHHHhcCCCceEEECCC--CHHHHHHHHHHHHhccC
Confidence 66 667888743 3357899999999999997543 556677778889988743 56666 56666666
Q ss_pred CHHHHHHHHH
Q psy14941 425 SPEYKENAED 434 (513)
Q Consensus 425 ~~~y~~~a~~ 434 (513)
++..++++.+
T Consensus 332 ~~~~~~~~~~ 341 (353)
T cd03811 332 DPELRERLAA 341 (353)
T ss_pred ChHHHHHHHH
Confidence 6665555544
No 64
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=99.02 E-value=4.7e-08 Score=97.33 Aligned_cols=133 Identities=15% Similarity=0.222 Sum_probs=85.4
Q ss_pred CCceEEEEeCcccccCCCCHHHHHHHHHHHhcC----C-CeEEEEEcCCCC---------CCCCCCCcEEEecCCCc-cc
Q psy14941 288 HNGVIYFSMGSMLKTSSFPPDKFKAFLKAFSKI----P-QRVLWKFEDNDT---------SIFKPYKNIRTSSWMPQ-RD 352 (513)
Q Consensus 288 ~~~~v~vs~Gs~~~~~~~~~~~~~~~~~~~~~~----~-~~~i~~~~~~~~---------~~~~~~~nv~~~~~~pq-~~ 352 (513)
+++.+++..|+.. +.+-...+++++.++ + .++++.-++... .+ . .+|+.+.++..+ .+
T Consensus 186 ~~~~~~l~~g~~~-----~~kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~~~~~~~~~~-~-~~~v~~~g~~~~~~~ 258 (360)
T cd04951 186 NDTFVILAVGRLV-----EAKDYPNLLKAFAKLLSDYLDIKLLIAGDGPLRATLERLIKALG-L-SNRVKLLGLRDDIAA 258 (360)
T ss_pred CCCEEEEEEeeCc-----hhcCcHHHHHHHHHHHhhCCCeEEEEEcCCCcHHHHHHHHHhcC-C-CCcEEEecccccHHH
Confidence 4567788888765 334444555555433 2 366665443221 12 3 578999988765 36
Q ss_pred cccCCCceEEeccCC----cccHHHHHHcCcceEeeccccCcHHHHHHHHHcCcEEEeccCCCCHHHHHHHHHHhc--CH
Q psy14941 353 IFAHPNMKLFISHGG----LLGITEAVYEGIPVLGIPVFGDQWANIKKLESLKAGKLLPYLEITEETVSDALKIVL--SP 426 (513)
Q Consensus 353 lL~h~~~~~~IthgG----~~s~~Eal~~GvP~i~~P~~~DQ~~na~~~~~~G~G~~l~~~~~~~~~l~~ai~~ll--~~ 426 (513)
++ ..+++++.-.. .+++.||+++|+|+|+.. ...+...+++. |..++. -+.+++.++|.+++ ++
T Consensus 259 ~~--~~ad~~v~~s~~e~~~~~~~Ea~a~G~PvI~~~----~~~~~e~i~~~--g~~~~~--~~~~~~~~~i~~ll~~~~ 328 (360)
T cd04951 259 YY--NAADLFVLSSAWEGFGLVVAEAMACELPVVATD----AGGVREVVGDS--GLIVPI--SDPEALANKIDEILKMSG 328 (360)
T ss_pred HH--HhhceEEecccccCCChHHHHHHHcCCCEEEec----CCChhhEecCC--ceEeCC--CCHHHHHHHHHHHHhCCH
Confidence 67 66788776543 578999999999999863 34455555553 444442 37899999999998 56
Q ss_pred HHHHHHHHHHH
Q psy14941 427 EYKENAEDLGT 437 (513)
Q Consensus 427 ~y~~~a~~~~~ 437 (513)
.+++.+.+..+
T Consensus 329 ~~~~~~~~~~~ 339 (360)
T cd04951 329 EERDIIGARRE 339 (360)
T ss_pred HHHHHHHHHHH
Confidence 66666655433
No 65
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=99.01 E-value=1.5e-07 Score=94.18 Aligned_cols=90 Identities=21% Similarity=0.314 Sum_probs=68.6
Q ss_pred CCcEEEecCCCcc---ccccCCCceEEecc----------CCcccHHHHHHcCcceEeeccccCcHHHHHHHHHcCcEEE
Q psy14941 339 YKNIRTSSWMPQR---DIFAHPNMKLFISH----------GGLLGITEAVYEGIPVLGIPVFGDQWANIKKLESLKAGKL 405 (513)
Q Consensus 339 ~~nv~~~~~~pq~---~lL~h~~~~~~Ith----------gG~~s~~Eal~~GvP~i~~P~~~DQ~~na~~~~~~G~G~~ 405 (513)
.+++.+.+++|+. +++ ..+++++.. |-.+++.||+++|+|+|+.+..+ ++..+.+.+.|..
T Consensus 244 ~~~v~~~g~~~~~~l~~~~--~~ad~~v~ps~~~~~~~~E~~~~~~~EA~a~G~PvI~s~~~~----~~e~i~~~~~g~~ 317 (367)
T cd05844 244 GGRVTFLGAQPHAEVRELM--RRARIFLQPSVTAPSGDAEGLPVVLLEAQASGVPVVATRHGG----IPEAVEDGETGLL 317 (367)
T ss_pred CCeEEECCCCCHHHHHHHH--HhCCEEEECcccCCCCCccCCchHHHHHHHcCCCEEEeCCCC----chhheecCCeeEE
Confidence 6789999999876 446 677887743 23578999999999999987643 5666777788988
Q ss_pred eccCCCCHHHHHHHHHHhc-CHHHHHHHHHHH
Q psy14941 406 LPYLEITEETVSDALKIVL-SPEYKENAEDLG 436 (513)
Q Consensus 406 l~~~~~~~~~l~~ai~~ll-~~~y~~~a~~~~ 436 (513)
++ .-+.+++.++|.+++ |++.++++.+-+
T Consensus 318 ~~--~~d~~~l~~~i~~l~~~~~~~~~~~~~a 347 (367)
T cd05844 318 VP--EGDVAALAAALGRLLADPDLRARMGAAG 347 (367)
T ss_pred EC--CCCHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 87 347899999999999 877555444433
No 66
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=99.01 E-value=2.5e-07 Score=91.92 Aligned_cols=126 Identities=17% Similarity=0.244 Sum_probs=84.9
Q ss_pred CCceEEEEeCcccccCCCCHHHHHHHHHHHhcCC----C-eEEEEEcCCCC---------CCCCCCCcEEEecCCCcc--
Q psy14941 288 HNGVIYFSMGSMLKTSSFPPDKFKAFLKAFSKIP----Q-RVLWKFEDNDT---------SIFKPYKNIRTSSWMPQR-- 351 (513)
Q Consensus 288 ~~~~v~vs~Gs~~~~~~~~~~~~~~~~~~~~~~~----~-~~i~~~~~~~~---------~~~~~~~nv~~~~~~pq~-- 351 (513)
.++.+++..|+.. +.+..+.+++++..+. . .+++...+... .+ . .+||.+.+++|+.
T Consensus 200 ~~~~~i~~~g~~~-----~~k~~~~li~~~~~~~~~~~~~~l~i~g~~~~~~~~~~~~~~~~-~-~~~v~~~g~~~~~~~ 272 (377)
T cd03798 200 EDKKVILFVGRLV-----PRKGIDYLIEALARLLKKRPDVHLVIVGDGPLREALEALAAELG-L-EDRVTFLGAVPHEEV 272 (377)
T ss_pred CCceEEEEeccCc-----cccCHHHHHHHHHHHHhcCCCeEEEEEcCCcchHHHHHHHHhcC-C-cceEEEeCCCCHHHH
Confidence 4667788888875 2333455555555432 2 44433222110 12 3 6799999999976
Q ss_pred -ccccCCCceEEec----cCCcccHHHHHHcCcceEeeccccCcHHHHHHHHHcCcEEEeccCCCCHHHHHHHHHHhc-C
Q psy14941 352 -DIFAHPNMKLFIS----HGGLLGITEAVYEGIPVLGIPVFGDQWANIKKLESLKAGKLLPYLEITEETVSDALKIVL-S 425 (513)
Q Consensus 352 -~lL~h~~~~~~It----hgG~~s~~Eal~~GvP~i~~P~~~DQ~~na~~~~~~G~G~~l~~~~~~~~~l~~ai~~ll-~ 425 (513)
+++ .+++++|. -|..+++.||+++|+|+|+.+..+ ....+++.+.|...+ .-+.+++.++|.+++ +
T Consensus 273 ~~~~--~~ad~~i~~~~~~~~~~~~~Ea~~~G~pvI~~~~~~----~~~~~~~~~~g~~~~--~~~~~~l~~~i~~~~~~ 344 (377)
T cd03798 273 PAYY--AAADVFVLPSLREGFGLVLLEAMACGLPVVATDVGG----IPEIITDGENGLLVP--PGDPEALAEAILRLLAD 344 (377)
T ss_pred HHHH--HhcCeeecchhhccCChHHHHHHhcCCCEEEecCCC----hHHHhcCCcceeEEC--CCCHHHHHHHHHHHhcC
Confidence 456 66788873 345678999999999999876543 455666777788876 447899999999999 7
Q ss_pred HHH
Q psy14941 426 PEY 428 (513)
Q Consensus 426 ~~y 428 (513)
+..
T Consensus 345 ~~~ 347 (377)
T cd03798 345 PWL 347 (377)
T ss_pred cHH
Confidence 764
No 67
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=99.01 E-value=2e-07 Score=90.22 Aligned_cols=327 Identities=15% Similarity=0.132 Sum_probs=168.1
Q ss_pred eEeEEcCCCCCChHHHHHHHHHHHHhCCCcEEEEEeecCCcc---ccCCeEEEEecCcccchhhHHHHHhhchhHHHHHH
Q psy14941 28 KILAIFPTPAKSHQIIFDTILVELYQRGHDLTVITQYPETLV---HYERMKVLDIKGTHTYNSTIEDIYELSADSIKRIH 104 (513)
Q Consensus 28 kIL~~~p~~~~gH~~~~~~la~~L~~rGH~Vt~~~~~~~~~~---~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (513)
||++=...| .|+..+..++++|.++||+|.+.+-+..... +.-++..+.+.... . +....+.
T Consensus 2 kIwiDi~~p--~hvhfFk~~I~eL~~~GheV~it~R~~~~~~~LL~~yg~~y~~iG~~g--~-----------~~~~Kl~ 66 (335)
T PF04007_consen 2 KIWIDITHP--AHVHFFKNIIRELEKRGHEVLITARDKDETEELLDLYGIDYIVIGKHG--D-----------SLYGKLL 66 (335)
T ss_pred eEEEECCCc--hHHHHHHHHHHHHHhCCCEEEEEEeccchHHHHHHHcCCCeEEEcCCC--C-----------CHHHHHH
Confidence 677556665 4999999999999999999987776432211 02233344332111 0 0111111
Q ss_pred HHHHHHHHHHHHHhCCHhHHHHhccCCCccEEEEccchhchHHhhhhccCCCEEEEeCCCCchhhhhhcCCCCCCCccCc
Q psy14941 105 INFIDQEIQVENIFLHENMKSIWNMENKYDLIITEMFLTDAFLVIPYLYKVPYISIASSTLHPQHSERLGLPDNPSYIPS 184 (513)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~Dlvi~d~~~~~~~~~~a~~l~iP~i~~~~~~~~~~~~~~~g~p~~~s~~P~ 184 (513)
. . .....++.+.++ +.+||++|+-.. ..+. .+|..+|+|+|.+.-......... .- .|
T Consensus 67 ~-~---------~~R~~~l~~~~~-~~~pDv~is~~s-~~a~-~va~~lgiP~I~f~D~e~a~~~~~-Lt-------~P- 124 (335)
T PF04007_consen 67 E-S---------IERQYKLLKLIK-KFKPDVAISFGS-PEAA-RVAFGLGIPSIVFNDTEHAIAQNR-LT-------LP- 124 (335)
T ss_pred H-H---------HHHHHHHHHHHH-hhCCCEEEecCc-HHHH-HHHHHhCCCeEEEecCchhhccce-ee-------hh-
Confidence 1 0 001234556666 688999998544 4445 489999999998876433221100 00 01
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHHHHHHHhhchhH-HHHHHHHhCCCCCCHHhhhcCccEEEEeccCccCCCccCCCceE
Q psy14941 185 YVSAYTDHMSFTERLSNTFVGLYYKWYYDYKSHGA-ANRIIHKYFPEIPRIQDLLNTCSLTLVNTHHTINIARPLPANVV 263 (513)
Q Consensus 185 ~~~~~~~~~~~~~r~~n~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~l~~s~~~l~~~~p~~p~~~ 263 (513)
+++. ...|. ......+.+|. + ....=.++..++-+-.|..|
T Consensus 125 ----la~~----------------------i~~P~~~~~~~~~~~G~--------~-~~i~~y~G~~E~ayl~~F~P--- 166 (335)
T PF04007_consen 125 ----LADV----------------------IITPEAIPKEFLKRFGA--------K-NQIRTYNGYKELAYLHPFKP--- 166 (335)
T ss_pred ----cCCe----------------------eECCcccCHHHHHhcCC--------c-CCEEEECCeeeEEeecCCCC---
Confidence 0000 00000 00011112221 0 00111222222222111111
Q ss_pred EeCcccccCCCCCcHHHHHHhhcCCCceEEEEeCcccccC-CCCHHHHHHHHHHHhcCCCeEEEEEcCCCCCCCCCCCcE
Q psy14941 264 EIGGIHVKPAKKLNEEMERFLNESHNGVIYFSMGSMLKTS-SFPPDKFKAFLKAFSKIPQRVLWKFEDNDTSIFKPYKNI 342 (513)
Q Consensus 264 ~vG~l~~~~~~~l~~~l~~~l~~~~~~~v~vs~Gs~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~nv 342 (513)
+++..+-+...+++.|++-+.+..... ....+.+..+++.+++.+..++..-...+..+..+.-++
T Consensus 167 -------------d~~vl~~lg~~~~~yIvvR~~~~~A~y~~~~~~i~~~ii~~L~~~~~~vV~ipr~~~~~~~~~~~~~ 233 (335)
T PF04007_consen 167 -------------DPEVLKELGLDDEPYIVVRPEAWKASYDNGKKSILPEIIEELEKYGRNVVIIPRYEDQRELFEKYGV 233 (335)
T ss_pred -------------ChhHHHHcCCCCCCEEEEEeccccCeeecCccchHHHHHHHHHhhCceEEEecCCcchhhHHhccCc
Confidence 233333333225678888776643221 223455678888888877664443332222220101123
Q ss_pred EEe-cCCCccccccCCCceEEeccCCcccHHHHHHcCcceEeeccccCcHHHHHHHHHcCcEEEeccCCCCHHHHHHHHH
Q psy14941 343 RTS-SWMPQRDIFAHPNMKLFISHGGLLGITEAVYEGIPVLGIPVFGDQWANIKKLESLKAGKLLPYLEITEETVSDALK 421 (513)
Q Consensus 343 ~~~-~~~pq~~lL~h~~~~~~IthgG~~s~~Eal~~GvP~i~~P~~~DQ~~na~~~~~~G~G~~l~~~~~~~~~l~~ai~ 421 (513)
.+. .-+.-.+|| ..++++|+-|| ....||...|+|.|-+ ..++-...-+.+.+.|.-.... +.+++.+.+.
T Consensus 234 ~i~~~~vd~~~Ll--~~a~l~Ig~gg-TMa~EAA~LGtPaIs~-~~g~~~~vd~~L~~~Gll~~~~----~~~ei~~~v~ 305 (335)
T PF04007_consen 234 IIPPEPVDGLDLL--YYADLVIGGGG-TMAREAALLGTPAISC-FPGKLLAVDKYLIEKGLLYHST----DPDEIVEYVR 305 (335)
T ss_pred cccCCCCCHHHHH--HhcCEEEeCCc-HHHHHHHHhCCCEEEe-cCCcchhHHHHHHHCCCeEecC----CHHHHHHHHH
Confidence 332 234444788 77899999888 8889999999999985 2233333445567777633333 6676666443
Q ss_pred HhcCHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q psy14941 422 IVLSPEYKENAEDLGTRFRDRPQSPLEVAIYWIEYVI 458 (513)
Q Consensus 422 ~ll~~~y~~~a~~~~~~~~~~~~~~~~~a~~~ie~~~ 458 (513)
+ +...+++.+... .+ ++.+..++.||.++
T Consensus 306 ~--~~~~~~~~~~~~----~~--d~~~~i~~~i~~~~ 334 (335)
T PF04007_consen 306 K--NLGKRKKIREKK----SE--DPTDLIIEEIEEYI 334 (335)
T ss_pred H--hhhcccchhhhh----cc--CHHHHHHHHHHHhh
Confidence 3 334444333321 13 78888888888764
No 68
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=98.99 E-value=2.5e-07 Score=93.99 Aligned_cols=94 Identities=18% Similarity=0.120 Sum_probs=69.9
Q ss_pred CCcEEEecCCCcc---ccccCCCceEEecc----CCcccHHHHHHcCcceEeeccccCcHHHHHHHHHcCcEEEeccCCC
Q psy14941 339 YKNIRTSSWMPQR---DIFAHPNMKLFISH----GGLLGITEAVYEGIPVLGIPVFGDQWANIKKLESLKAGKLLPYLEI 411 (513)
Q Consensus 339 ~~nv~~~~~~pq~---~lL~h~~~~~~Ith----gG~~s~~Eal~~GvP~i~~P~~~DQ~~na~~~~~~G~G~~l~~~~~ 411 (513)
.+||.+.+++|+. +++ ..+++++.- |...++.||+++|+|+|+....+ ....+++.+.|..++. -
T Consensus 282 ~~~v~~~g~~~~~~~~~~l--~~ad~~v~ps~~E~~g~~~lEAma~G~Pvi~~~~~~----~~e~i~~~~~g~~~~~--~ 353 (405)
T TIGR03449 282 ADRVRFLPPRPPEELVHVY--RAADVVAVPSYNESFGLVAMEAQACGTPVVAARVGG----LPVAVADGETGLLVDG--H 353 (405)
T ss_pred CceEEECCCCCHHHHHHHH--HhCCEEEECCCCCCcChHHHHHHHcCCCEEEecCCC----cHhhhccCCceEECCC--C
Confidence 5789999999865 567 677888742 33468999999999999976533 3445566677888763 3
Q ss_pred CHHHHHHHHHHhc-CHHHHHHHHHHHHHHh
Q psy14941 412 TEETVSDALKIVL-SPEYKENAEDLGTRFR 440 (513)
Q Consensus 412 ~~~~l~~ai~~ll-~~~y~~~a~~~~~~~~ 440 (513)
+.+++.++|.+++ |+..++++.+-+....
T Consensus 354 d~~~la~~i~~~l~~~~~~~~~~~~~~~~~ 383 (405)
T TIGR03449 354 DPADWADALARLLDDPRTRIRMGAAAVEHA 383 (405)
T ss_pred CHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 7899999999999 8877666665555443
No 69
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=98.96 E-value=7.1e-10 Score=94.51 Aligned_cols=128 Identities=16% Similarity=0.132 Sum_probs=73.0
Q ss_pred EeEEcCCCCCChHHHHHHHHHHHHhCCCcEEEEEeecCCcc-ccCCeEEEEecCc-ccchh--hHHHHHhhchhHHHHHH
Q psy14941 29 ILAIFPTPAKSHQIIFDTILVELYQRGHDLTVITQYPETLV-HYERMKVLDIKGT-HTYNS--TIEDIYELSADSIKRIH 104 (513)
Q Consensus 29 IL~~~p~~~~gH~~~~~~la~~L~~rGH~Vt~~~~~~~~~~-~~~~~~~i~~~~~-~~~~~--~~~~~~~~~~~~~~~~~ 104 (513)
|| +...++.||++|+++||++|++|||+|++.++...... +..++.+..++.. ..... ......... ....
T Consensus 1 Il-i~~~Gt~Ghv~P~lala~~L~~rGh~V~~~~~~~~~~~v~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 75 (139)
T PF03033_consen 1 IL-IATGGTRGHVYPFLALARALRRRGHEVRLATPPDFRERVEAAGLEFVPIPGDSRLPRSLEPLANLRRLA----RLIR 75 (139)
T ss_dssp EE-EEEESSHHHHHHHHHHHHHHHHTT-EEEEEETGGGHHHHHHTT-EEEESSSCGGGGHHHHHHHHHHCHH----HHHH
T ss_pred CE-EEEcCChhHHHHHHHHHHHHhccCCeEEEeecccceecccccCceEEEecCCcCcCcccchhhhhhhHH----HHhh
Confidence 55 77888999999999999999999999999998766543 2567788877644 22221 111111111 1111
Q ss_pred HHHHHHHHHHHHHhCCHhHHHHhccCCCccEEEEccchhchHHhhhhccCCCEEEEeCCCC
Q psy14941 105 INFIDQEIQVENIFLHENMKSIWNMENKYDLIITEMFLTDAFLVIPYLYKVPYISIASSTL 165 (513)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~Dlvi~d~~~~~~~~~~a~~l~iP~i~~~~~~~ 165 (513)
. +.+......... .+.+..... ....|+++.+.....+. .+|+++|||++.....+.
T Consensus 76 ~-~~~~~~~~~~~~-~~~~~~~~~-~~~~~~i~~~~~~~~~~-~vaE~~~iP~~~~~~~p~ 132 (139)
T PF03033_consen 76 G-LEEAMRILARFR-PDLVVAAGG-YVADDVIIAAPLAFAAA-LVAEQLGIPGVANRLFPW 132 (139)
T ss_dssp H-HHHHHHHHHHHH-HCCCCHCTT-TTECCEECHHHHHTHHH-HHHHHHTS-EEEEESSGG
T ss_pred h-hhHHHHHhhccC-cchhhhccC-cccchHHHhhhhcCccc-eeEhhhCchHHHHhhCCc
Confidence 1 111111111000 000111111 34678888887766666 499999999998877654
No 70
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=98.93 E-value=6.5e-07 Score=89.29 Aligned_cols=93 Identities=16% Similarity=0.181 Sum_probs=66.7
Q ss_pred CCcEEEecCCC-cc---ccccCCCceEEeccC----CcccHHHHHHcCcceEeeccccCcHHHHHHHHHcCcEEEeccCC
Q psy14941 339 YKNIRTSSWMP-QR---DIFAHPNMKLFISHG----GLLGITEAVYEGIPVLGIPVFGDQWANIKKLESLKAGKLLPYLE 410 (513)
Q Consensus 339 ~~nv~~~~~~p-q~---~lL~h~~~~~~Ithg----G~~s~~Eal~~GvP~i~~P~~~DQ~~na~~~~~~G~G~~l~~~~ 410 (513)
..++...+|++ +. .++ ..+++++... ..+++.||+++|+|+|+....+ ....+.+.+.|..++ .
T Consensus 243 ~~~v~~~g~~~~~~~~~~~~--~~ad~~l~ps~~e~~g~~~~Eam~~g~PvI~~~~~~----~~e~~~~~~~g~~~~--~ 314 (365)
T cd03825 243 PFPVHYLGSLNDDESLALIY--SAADVFVVPSLQENFPNTAIEALACGTPVVAFDVGG----IPDIVDHGVTGYLAK--P 314 (365)
T ss_pred CCceEecCCcCCHHHHHHHH--HhCCEEEeccccccccHHHHHHHhcCCCEEEecCCC----ChhheeCCCceEEeC--C
Confidence 67899999998 43 456 6788888853 3588999999999999875432 223344445787776 3
Q ss_pred CCHHHHHHHHHHhc-CHHHHHHHHHHHHHH
Q psy14941 411 ITEETVSDALKIVL-SPEYKENAEDLGTRF 439 (513)
Q Consensus 411 ~~~~~l~~ai~~ll-~~~y~~~a~~~~~~~ 439 (513)
.+.+++.+++.+++ |++..+++.+-+...
T Consensus 315 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 344 (365)
T cd03825 315 GDPEDLAEGIEWLLADPDEREELGEAAREL 344 (365)
T ss_pred CCHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 47899999999999 877555444444433
No 71
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=98.92 E-value=1.1e-06 Score=89.92 Aligned_cols=100 Identities=17% Similarity=0.199 Sum_probs=75.2
Q ss_pred ccccCCCceEEecc-----CCcccHHHHHHcCcceEeeccccCcHHHHHHHHHcCcEEEeccCCCCHHHHHHHHHHhc-C
Q psy14941 352 DIFAHPNMKLFISH-----GGLLGITEAVYEGIPVLGIPVFGDQWANIKKLESLKAGKLLPYLEITEETVSDALKIVL-S 425 (513)
Q Consensus 352 ~lL~h~~~~~~Ith-----gG~~s~~Eal~~GvP~i~~P~~~DQ~~na~~~~~~G~G~~l~~~~~~~~~l~~ai~~ll-~ 425 (513)
+++ ..+|+++.. ||..++.||+++|+|+|+.|..+++......+.+.|.++... +.+++.++|.+++ |
T Consensus 315 ~~y--~~aDi~~v~~S~~e~~g~~~lEAma~G~PVI~g~~~~~~~e~~~~~~~~g~~~~~~----d~~~La~~l~~ll~~ 388 (425)
T PRK05749 315 LLY--AIADIAFVGGSLVKRGGHNPLEPAAFGVPVISGPHTFNFKEIFERLLQAGAAIQVE----DAEDLAKAVTYLLTD 388 (425)
T ss_pred HHH--HhCCEEEECCCcCCCCCCCHHHHHHhCCCEEECCCccCHHHHHHHHHHCCCeEEEC----CHHHHHHHHHHHhcC
Confidence 555 677874432 445569999999999999999888888888887788877755 7899999999999 9
Q ss_pred HHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q psy14941 426 PEYKENAEDLGTRFRDRPQSPLEVAIYWIEYV 457 (513)
Q Consensus 426 ~~y~~~a~~~~~~~~~~~~~~~~~a~~~ie~~ 457 (513)
++.++++.+-+.....+..+..++..+.++..
T Consensus 389 ~~~~~~m~~~a~~~~~~~~~~~~~~~~~l~~~ 420 (425)
T PRK05749 389 PDARQAYGEAGVAFLKQNQGALQRTLQLLEPY 420 (425)
T ss_pred HHHHHHHHHHHHHHHHhCccHHHHHHHHHHHh
Confidence 88777777666555433335667766666543
No 72
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=98.91 E-value=4.8e-07 Score=89.66 Aligned_cols=133 Identities=17% Similarity=0.217 Sum_probs=82.5
Q ss_pred CCceEEEEeCcccccCCCCHHHHHHHHHHHhcC----C-CeEEEEEcCCCC-------C-C-CCCCCcEEEecCCCcc-c
Q psy14941 288 HNGVIYFSMGSMLKTSSFPPDKFKAFLKAFSKI----P-QRVLWKFEDNDT-------S-I-FKPYKNIRTSSWMPQR-D 352 (513)
Q Consensus 288 ~~~~v~vs~Gs~~~~~~~~~~~~~~~~~~~~~~----~-~~~i~~~~~~~~-------~-~-~~~~~nv~~~~~~pq~-~ 352 (513)
+++.+++..|+.. +.+....+++++..+ + .++++.-.+... . + .. .+++.+.+..++. +
T Consensus 191 ~~~~~i~~~G~~~-----~~K~~~~li~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~-~~~v~~~g~~~~~~~ 264 (365)
T cd03807 191 EDTFLIGIVARLH-----PQKDHATLLRAAALLLKKFPNARLLLVGDGPDRANLELLALKELGL-EDKVILLGERSDVPA 264 (365)
T ss_pred CCCeEEEEecccc-----hhcCHHHHHHHHHHHHHhCCCeEEEEecCCcchhHHHHHHHHhcCC-CceEEEccccccHHH
Confidence 4566777788875 233445555555432 2 355554332211 0 1 13 5678877755443 6
Q ss_pred cccCCCceEEeccCC----cccHHHHHHcCcceEeeccccCcHHHHHHHHHcCcEEEeccCCCCHHHHHHHHHHhc-CHH
Q psy14941 353 IFAHPNMKLFISHGG----LLGITEAVYEGIPVLGIPVFGDQWANIKKLESLKAGKLLPYLEITEETVSDALKIVL-SPE 427 (513)
Q Consensus 353 lL~h~~~~~~IthgG----~~s~~Eal~~GvP~i~~P~~~DQ~~na~~~~~~G~G~~l~~~~~~~~~l~~ai~~ll-~~~ 427 (513)
++ ..+++++..+. .+++.||+++|+|+|+.... .+...+.+ .|..++.. +.+++.++|.+++ |++
T Consensus 265 ~~--~~adi~v~ps~~e~~~~~~~Ea~a~g~PvI~~~~~----~~~e~~~~--~g~~~~~~--~~~~l~~~i~~l~~~~~ 334 (365)
T cd03807 265 LL--NALDVFVLSSLSEGFPNVLLEAMACGLPVVATDVG----DNAELVGD--TGFLVPPG--DPEALAEAIEALLADPA 334 (365)
T ss_pred HH--HhCCEEEeCCccccCCcHHHHHHhcCCCEEEcCCC----ChHHHhhc--CCEEeCCC--CHHHHHHHHHHHHhChH
Confidence 66 67888886544 47899999999999996543 34455554 56666533 6899999999999 865
Q ss_pred HHHHHHHHH
Q psy14941 428 YKENAEDLG 436 (513)
Q Consensus 428 y~~~a~~~~ 436 (513)
.++...+-+
T Consensus 335 ~~~~~~~~~ 343 (365)
T cd03807 335 LRQALGEAA 343 (365)
T ss_pred HHHHHHHHH
Confidence 444443333
No 73
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=98.89 E-value=9.5e-07 Score=87.03 Aligned_cols=119 Identities=16% Similarity=0.092 Sum_probs=78.3
Q ss_pred ceEEEEeCcccccCCCCHHHHHHHHHHHhcCCCeEEEEEcCCCC-------CC-C-CCCCcEEEecCCCccc---cccCC
Q psy14941 290 GVIYFSMGSMLKTSSFPPDKFKAFLKAFSKIPQRVLWKFEDNDT-------SI-F-KPYKNIRTSSWMPQRD---IFAHP 357 (513)
Q Consensus 290 ~~v~vs~Gs~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-------~~-~-~~~~nv~~~~~~pq~~---lL~h~ 357 (513)
...++..|... +.+....+++++++.+.++++.-.+... .. . + .+++.+.+++++.+ ++ .
T Consensus 171 ~~~i~~~Gr~~-----~~Kg~~~li~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~-~~~v~~~G~~~~~~~~~~~--~ 242 (335)
T cd03802 171 GDYLLFLGRIS-----PEKGPHLAIRAARRAGIPLKLAGPVSDPDYFYREIAPELLD-GPDIEYLGEVGGAEKAELL--G 242 (335)
T ss_pred CCEEEEEEeec-----cccCHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhccc-CCcEEEeCCCCHHHHHHHH--H
Confidence 34455567764 3344556777777766676665443221 11 0 2 47899999999864 46 5
Q ss_pred CceEEecc----CC-cccHHHHHHcCcceEeeccccCcHHHHHHHHHcCcEEEeccCCCCHHHHHHHHHHhc
Q psy14941 358 NMKLFISH----GG-LLGITEAVYEGIPVLGIPVFGDQWANIKKLESLKAGKLLPYLEITEETVSDALKIVL 424 (513)
Q Consensus 358 ~~~~~Ith----gG-~~s~~Eal~~GvP~i~~P~~~DQ~~na~~~~~~G~G~~l~~~~~~~~~l~~ai~~ll 424 (513)
.+++++.- -| ..++.||+++|+|+|+.... .+...+.+...|...+. .+++.++|.++.
T Consensus 243 ~~d~~v~ps~~~E~~~~~~lEAma~G~PvI~~~~~----~~~e~i~~~~~g~l~~~----~~~l~~~l~~l~ 306 (335)
T cd03802 243 NARALLFPILWEEPFGLVMIEAMACGTPVIAFRRG----AVPEVVEDGVTGFLVDS----VEELAAAVARAD 306 (335)
T ss_pred hCcEEEeCCcccCCcchHHHHHHhcCCCEEEeCCC----CchhheeCCCcEEEeCC----HHHHHHHHHHHh
Confidence 66777642 23 35899999999999998653 23344444447888872 899999999987
No 74
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=98.88 E-value=2.9e-07 Score=91.64 Aligned_cols=134 Identities=12% Similarity=0.142 Sum_probs=87.1
Q ss_pred CCceEEEEeCcccccCCCCHHHHHHHHHHHhcC----CC-eEEEEEcCCCC---------CCCCCCCcEEEecCCCc-cc
Q psy14941 288 HNGVIYFSMGSMLKTSSFPPDKFKAFLKAFSKI----PQ-RVLWKFEDNDT---------SIFKPYKNIRTSSWMPQ-RD 352 (513)
Q Consensus 288 ~~~~v~vs~Gs~~~~~~~~~~~~~~~~~~~~~~----~~-~~i~~~~~~~~---------~~~~~~~nv~~~~~~pq-~~ 352 (513)
+++.+++..|+.. +.+-...+++++..+ +. ++++.-++... .+ . .+++.+.++..+ .+
T Consensus 190 ~~~~~i~~vGr~~-----~~Kg~~~li~a~~~l~~~~~~~~l~ivG~g~~~~~~~~~~~~~~-~-~~~v~~~g~~~~~~~ 262 (358)
T cd03812 190 EDKFVIGHVGRFS-----EQKNHEFLIEIFAELLKKNPNAKLLLVGDGELEEEIKKKVKELG-L-EDKVIFLGVRNDVPE 262 (358)
T ss_pred CCCEEEEEEeccc-----cccChHHHHHHHHHHHHhCCCeEEEEEeCCchHHHHHHHHHhcC-C-CCcEEEecccCCHHH
Confidence 4667777888875 334444555555443 23 55554332211 12 4 678999998544 36
Q ss_pred cccCCCceEEecc----CCcccHHHHHHcCcceEeeccccCcHHHHHHHHHcCcEEEeccCCCCHHHHHHHHHHhc-CHH
Q psy14941 353 IFAHPNMKLFISH----GGLLGITEAVYEGIPVLGIPVFGDQWANIKKLESLKAGKLLPYLEITEETVSDALKIVL-SPE 427 (513)
Q Consensus 353 lL~h~~~~~~Ith----gG~~s~~Eal~~GvP~i~~P~~~DQ~~na~~~~~~G~G~~l~~~~~~~~~l~~ai~~ll-~~~ 427 (513)
++ ..+++++.- |-.+++.||+++|+|+|+....+ ....+++ +.|.... +-+.+++.++|.+++ |+.
T Consensus 263 ~~--~~adi~v~ps~~E~~~~~~lEAma~G~PvI~s~~~~----~~~~i~~-~~~~~~~--~~~~~~~a~~i~~l~~~~~ 333 (358)
T cd03812 263 LL--QAMDVFLFPSLYEGLPLVLIEAQASGLPCILSDTIT----KEVDLTD-LVKFLSL--DESPEIWAEEILKLKSEDR 333 (358)
T ss_pred HH--HhcCEEEecccccCCCHHHHHHHHhCCCEEEEcCCc----hhhhhcc-CccEEeC--CCCHHHHHHHHHHHHhCcc
Confidence 67 677888864 34578999999999999976544 3334444 5666554 225799999999999 888
Q ss_pred HHHHHHHHHH
Q psy14941 428 YKENAEDLGT 437 (513)
Q Consensus 428 y~~~a~~~~~ 437 (513)
.++++...+.
T Consensus 334 ~~~~~~~~~~ 343 (358)
T cd03812 334 RERSSESIKK 343 (358)
T ss_pred hhhhhhhhhh
Confidence 7776655444
No 75
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=98.87 E-value=7e-07 Score=88.78 Aligned_cols=93 Identities=16% Similarity=0.131 Sum_probs=65.3
Q ss_pred CCcEEEecCCCcc-ccccCCCceEEeccC----C-cccHHHHHHcCcceEeeccccCcHHHHHHHHHcCcEEEeccCCCC
Q psy14941 339 YKNIRTSSWMPQR-DIFAHPNMKLFISHG----G-LLGITEAVYEGIPVLGIPVFGDQWANIKKLESLKAGKLLPYLEIT 412 (513)
Q Consensus 339 ~~nv~~~~~~pq~-~lL~h~~~~~~Ithg----G-~~s~~Eal~~GvP~i~~P~~~DQ~~na~~~~~~G~G~~l~~~~~~ 412 (513)
.+||.+.++.++. +++ .+++++|.-. | .+++.||+++|+|+|+.... .....+.+.+.|..++. -+
T Consensus 245 ~~~v~~~g~~~~~~~~l--~~ad~~i~ps~~~e~~~~~l~EA~a~G~PvI~~~~~----~~~e~i~~~~~g~~~~~--~~ 316 (355)
T cd03819 245 QDRVTFVGHCSDMPAAY--ALADIVVSASTEPEAFGRTAVEAQAMGRPVIASDHG----GARETVRPGETGLLVPP--GD 316 (355)
T ss_pred cceEEEcCCcccHHHHH--HhCCEEEecCCCCCCCchHHHHHHhcCCCEEEcCCC----CcHHHHhCCCceEEeCC--CC
Confidence 5789999995433 666 6678777533 2 36899999999999987543 34555666668888863 48
Q ss_pred HHHHHHHHHHhc--CHHHHHHHHHHHHHH
Q psy14941 413 EETVSDALKIVL--SPEYKENAEDLGTRF 439 (513)
Q Consensus 413 ~~~l~~ai~~ll--~~~y~~~a~~~~~~~ 439 (513)
.+++.++|..++ |++.++++.+-+...
T Consensus 317 ~~~l~~~i~~~~~~~~~~~~~~~~~a~~~ 345 (355)
T cd03819 317 AEALAQALDQILSLLPEGRAKMFAKARMC 345 (355)
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHH
Confidence 899999997555 666665555554444
No 76
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=98.87 E-value=7.6e-07 Score=90.23 Aligned_cols=122 Identities=14% Similarity=0.174 Sum_probs=76.7
Q ss_pred CCceEEEEeCcccccCCCCHHHHHHHHHHHh----cCCC-eEEEEEcCCCC---------CCCCCCCcEEEecCCCcc--
Q psy14941 288 HNGVIYFSMGSMLKTSSFPPDKFKAFLKAFS----KIPQ-RVLWKFEDNDT---------SIFKPYKNIRTSSWMPQR-- 351 (513)
Q Consensus 288 ~~~~v~vs~Gs~~~~~~~~~~~~~~~~~~~~----~~~~-~~i~~~~~~~~---------~~~~~~~nv~~~~~~pq~-- 351 (513)
+++.+++..|... +.+-...+++++. +.+. ++++.-.+... .+ + .++|.+.+|+|+.
T Consensus 191 ~~~~~i~~~grl~-----~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~-l-~~~v~~~G~~~~~~~ 263 (398)
T cd03796 191 NDKITIVVISRLV-----YRKGIDLLVGIIPEICKKHPNVRFIIGGDGPKRILLEEMREKYN-L-QDRVELLGAVPHERV 263 (398)
T ss_pred CCceEEEEEeccc-----hhcCHHHHHHHHHHHHhhCCCEEEEEEeCCchHHHHHHHHHHhC-C-CCeEEEeCCCCHHHH
Confidence 3567777888775 3333444555553 3343 55554333211 12 3 5679999999865
Q ss_pred -ccccCCCceEEeccC---Cc-ccHHHHHHcCcceEeeccccCcHHHHHHHHHcCcEEEeccCCCCHHHHHHHHHHhc-C
Q psy14941 352 -DIFAHPNMKLFISHG---GL-LGITEAVYEGIPVLGIPVFGDQWANIKKLESLKAGKLLPYLEITEETVSDALKIVL-S 425 (513)
Q Consensus 352 -~lL~h~~~~~~Ithg---G~-~s~~Eal~~GvP~i~~P~~~DQ~~na~~~~~~G~G~~l~~~~~~~~~l~~ai~~ll-~ 425 (513)
.++ ..+++++.-. |. .++.||+++|+|+|+.+..+ ....+. .|.+.... . +.+++.+++.+++ +
T Consensus 264 ~~~l--~~ad~~v~pS~~E~~g~~~~EAma~G~PVI~s~~gg----~~e~i~-~~~~~~~~--~-~~~~l~~~l~~~l~~ 333 (398)
T cd03796 264 RDVL--VQGHIFLNTSLTEAFCIAIVEAASCGLLVVSTRVGG----IPEVLP-PDMILLAE--P-DVESIVRKLEEAISI 333 (398)
T ss_pred HHHH--HhCCEEEeCChhhccCHHHHHHHHcCCCEEECCCCC----chhhee-CCceeecC--C-CHHHHHHHHHHHHhC
Confidence 466 6778887532 33 48999999999999987653 223333 34343333 2 7899999999999 6
Q ss_pred H
Q psy14941 426 P 426 (513)
Q Consensus 426 ~ 426 (513)
.
T Consensus 334 ~ 334 (398)
T cd03796 334 L 334 (398)
T ss_pred h
Confidence 3
No 77
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=98.85 E-value=2.7e-06 Score=87.30 Aligned_cols=138 Identities=14% Similarity=0.175 Sum_probs=90.0
Q ss_pred CceEEEEeCcccccCCCCHHHHHHHHHHHhcCC-----CeEEEEEcCC-CCCC-------------------CCCCCcEE
Q psy14941 289 NGVIYFSMGSMLKTSSFPPDKFKAFLKAFSKIP-----QRVLWKFEDN-DTSI-------------------FKPYKNIR 343 (513)
Q Consensus 289 ~~~v~vs~Gs~~~~~~~~~~~~~~~~~~~~~~~-----~~~i~~~~~~-~~~~-------------------~~~~~nv~ 343 (513)
+..+++..|... +.+-...+++|+..++ .++++..++. +.+. .+ .++|.
T Consensus 247 ~~~~i~~vGrl~-----~~Kg~~~li~A~~~l~~~~~~~~l~li~G~g~~~~~l~~~~~~~~~~~~~~~~~~~l-~~~V~ 320 (439)
T TIGR02472 247 EKPPILAISRPD-----RRKNIPSLVEAYGRSPKLQEMANLVLVLGCRDDIRKMESQQREVLQKVLLLIDRYDL-YGKVA 320 (439)
T ss_pred CCcEEEEEcCCc-----ccCCHHHHHHHHHhChhhhhhccEEEEeCCccccccccHHHHHHHHHHHHHHHHcCC-CceEE
Confidence 455777778875 4555677777776421 2344344432 1100 03 56788
Q ss_pred EecCCCcccc---ccCC--CceEEeccC---C-cccHHHHHHcCcceEeeccccCcHHHHHHHHHcCcEEEeccCCCCHH
Q psy14941 344 TSSWMPQRDI---FAHP--NMKLFISHG---G-LLGITEAVYEGIPVLGIPVFGDQWANIKKLESLKAGKLLPYLEITEE 414 (513)
Q Consensus 344 ~~~~~pq~~l---L~h~--~~~~~Ithg---G-~~s~~Eal~~GvP~i~~P~~~DQ~~na~~~~~~G~G~~l~~~~~~~~ 414 (513)
+.+++++.++ +... .+++|+... | ..+++||+++|+|+|+.... .+...+.+...|..++.. +.+
T Consensus 321 f~g~~~~~~~~~~~~~a~~~~Dv~v~pS~~E~fg~~~lEAma~G~PvV~s~~g----g~~eiv~~~~~G~lv~~~--d~~ 394 (439)
T TIGR02472 321 YPKHHRPDDVPELYRLAARSRGIFVNPALTEPFGLTLLEAAACGLPIVATDDG----GPRDIIANCRNGLLVDVL--DLE 394 (439)
T ss_pred ecCCCCHHHHHHHHHHHhhcCCEEecccccCCcccHHHHHHHhCCCEEEeCCC----CcHHHhcCCCcEEEeCCC--CHH
Confidence 8888887655 4111 237888643 2 46899999999999998653 345555555678888743 789
Q ss_pred HHHHHHHHhc-CHHHHHHHHHHHHH
Q psy14941 415 TVSDALKIVL-SPEYKENAEDLGTR 438 (513)
Q Consensus 415 ~l~~ai~~ll-~~~y~~~a~~~~~~ 438 (513)
++.++|.+++ |+..++++.+-+..
T Consensus 395 ~la~~i~~ll~~~~~~~~~~~~a~~ 419 (439)
T TIGR02472 395 AIASALEDALSDSSQWQLWSRNGIE 419 (439)
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 9999999999 88766655555443
No 78
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=98.81 E-value=1.8e-07 Score=93.50 Aligned_cols=134 Identities=16% Similarity=0.142 Sum_probs=90.1
Q ss_pred CCceEEEEeCcccccCCCCHHHHHHHHHHHhcCCCe-EEEEEcCCC-----C----CCCC-CCCcEEEecCCCcc---cc
Q psy14941 288 HNGVIYFSMGSMLKTSSFPPDKFKAFLKAFSKIPQR-VLWKFEDND-----T----SIFK-PYKNIRTSSWMPQR---DI 353 (513)
Q Consensus 288 ~~~~v~vs~Gs~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~-----~----~~~~-~~~nv~~~~~~pq~---~l 353 (513)
+++.+++..|.... ..+.+.+..++++++++... +.+.+.++. + .+.. ..+|+.+.+..++. .+
T Consensus 197 ~~~~vlv~~~r~~~--~~~~k~~~~l~~al~~l~~~~~~vi~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~l 274 (363)
T cd03786 197 PKKYILVTLHRVEN--VDDGEQLEEILEALAELAEEDVPVVFPNHPRTRPRIREAGLEFLGHHPNVLLISPLGYLYFLLL 274 (363)
T ss_pred CCCEEEEEeCCccc--cCChHHHHHHHHHHHHHHhcCCEEEEECCCChHHHHHHHHHhhccCCCCEEEECCcCHHHHHHH
Confidence 46778888887652 11467788888888876432 444332211 1 1100 02688888776654 44
Q ss_pred ccCCCceEEeccCCcccHHHHHHcCcceEeeccccCcHHHHHHHHHcCcEEEeccCCCCHHHHHHHHHHhc-CHHHHHHH
Q psy14941 354 FAHPNMKLFISHGGLLGITEAVYEGIPVLGIPVFGDQWANIKKLESLKAGKLLPYLEITEETVSDALKIVL-SPEYKENA 432 (513)
Q Consensus 354 L~h~~~~~~IthgG~~s~~Eal~~GvP~i~~P~~~DQ~~na~~~~~~G~G~~l~~~~~~~~~l~~ai~~ll-~~~y~~~a 432 (513)
+ ..+++||+..| +.+.||++.|+|+|.++...+ +....+.|++..+. + +.+++.++|.+++ |+..++++
T Consensus 275 ~--~~ad~~v~~Sg-gi~~Ea~~~g~PvI~~~~~~~----~~~~~~~g~~~~~~--~-~~~~i~~~i~~ll~~~~~~~~~ 344 (363)
T cd03786 275 L--KNADLVLTDSG-GIQEEASFLGVPVLNLRDRTE----RPETVESGTNVLVG--T-DPEAILAAIEKLLSDEFAYSLM 344 (363)
T ss_pred H--HcCcEEEEcCc-cHHhhhhhcCCCEEeeCCCCc----cchhhheeeEEecC--C-CHHHHHHHHHHHhcCchhhhcC
Confidence 5 77999999999 778899999999999864322 34556678877664 1 5899999999999 87666655
Q ss_pred H
Q psy14941 433 E 433 (513)
Q Consensus 433 ~ 433 (513)
+
T Consensus 345 ~ 345 (363)
T cd03786 345 S 345 (363)
T ss_pred C
Confidence 4
No 79
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.79 E-value=2.9e-06 Score=84.56 Aligned_cols=129 Identities=17% Similarity=0.212 Sum_probs=80.0
Q ss_pred EEEEeCcccccCCCCHHHHHHHHHHHhcCC--CeEEEEEcCCCC----------CCCCCCCcEEEecCCCccc---cccC
Q psy14941 292 IYFSMGSMLKTSSFPPDKFKAFLKAFSKIP--QRVLWKFEDNDT----------SIFKPYKNIRTSSWMPQRD---IFAH 356 (513)
Q Consensus 292 v~vs~Gs~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~----------~~~~~~~nv~~~~~~pq~~---lL~h 356 (513)
.++..|+.. +.+-...+++++.+++ .++++.-++... .+ . .++|.+.+++|+.+ ++
T Consensus 195 ~i~~~G~~~-----~~Kg~~~li~a~~~l~~~~~l~ivG~~~~~~~~~~~~~~~~~-~-~~~V~~~g~~~~~~~~~~~-- 265 (363)
T cd04955 195 YYLLVGRIV-----PENNIDDLIEAFSKSNSGKKLVIVGNADHNTPYGKLLKEKAA-A-DPRIIFVGPIYDQELLELL-- 265 (363)
T ss_pred EEEEEeccc-----ccCCHHHHHHHHHhhccCceEEEEcCCCCcchHHHHHHHHhC-C-CCcEEEccccChHHHHHHH--
Confidence 345678875 4455667777777765 355544332111 12 3 68999999999874 44
Q ss_pred CCceEEeccCCc-----ccHHHHHHcCcceEeeccccCcHHHHHHHHHcCcEEEeccCCCCHHHHHHHHHHhc-CHHHHH
Q psy14941 357 PNMKLFISHGGL-----LGITEAVYEGIPVLGIPVFGDQWANIKKLESLKAGKLLPYLEITEETVSDALKIVL-SPEYKE 430 (513)
Q Consensus 357 ~~~~~~IthgG~-----~s~~Eal~~GvP~i~~P~~~DQ~~na~~~~~~G~G~~l~~~~~~~~~l~~ai~~ll-~~~y~~ 430 (513)
.++++++.+.-. +++.||+++|+|+|+....+. ...++. .|...+.. +.+.++|.+++ |++..+
T Consensus 266 ~~ad~~v~ps~~~e~~~~~~~EAma~G~PvI~s~~~~~----~e~~~~--~g~~~~~~----~~l~~~i~~l~~~~~~~~ 335 (363)
T cd04955 266 RYAALFYLHGHSVGGTNPSLLEAMAYGCPVLASDNPFN----REVLGD--KAIYFKVG----DDLASLLEELEADPEEVS 335 (363)
T ss_pred HhCCEEEeCCccCCCCChHHHHHHHcCCCEEEecCCcc----ceeecC--CeeEecCc----hHHHHHHHHHHhCHHHHH
Confidence 556777665433 578999999999999754421 112222 34444421 22999999999 876555
Q ss_pred HHHHHHHHH
Q psy14941 431 NAEDLGTRF 439 (513)
Q Consensus 431 ~a~~~~~~~ 439 (513)
++.+-+...
T Consensus 336 ~~~~~~~~~ 344 (363)
T cd04955 336 AMAKAARER 344 (363)
T ss_pred HHHHHHHHH
Confidence 555444433
No 80
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=98.77 E-value=4e-06 Score=84.15 Aligned_cols=151 Identities=15% Similarity=0.136 Sum_probs=92.7
Q ss_pred CCceEEEEeCcccccCCCCHHHHHHHHHHHhc----CCC-eEEEEEcCCC--------------CCCCCCCCcEEEecCC
Q psy14941 288 HNGVIYFSMGSMLKTSSFPPDKFKAFLKAFSK----IPQ-RVLWKFEDND--------------TSIFKPYKNIRTSSWM 348 (513)
Q Consensus 288 ~~~~v~vs~Gs~~~~~~~~~~~~~~~~~~~~~----~~~-~~i~~~~~~~--------------~~~~~~~~nv~~~~~~ 348 (513)
++..+++..|... +.+-...+++++.. .+. ++++.-++.. ..+ . .+++.+.++.
T Consensus 188 ~~~~~i~~vgrl~-----~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~~-~-~~~v~~~~~~ 260 (372)
T cd03792 188 PERPYITQVSRFD-----PWKDPFGVIDAYRKVKERVPDPQLVLVGSGATDDPEGWIVYEEVLEYAE-G-DPDIHVLTLP 260 (372)
T ss_pred CCCcEEEEEeccc-----cccCcHHHHHHHHHHHhhCCCCEEEEEeCCCCCCchhHHHHHHHHHHhC-C-CCCeEEEecC
Confidence 3556777788876 33333444444432 233 5555543321 012 3 5678888876
Q ss_pred --Ccc---ccccCCCceEEeccCC----cccHHHHHHcCcceEeeccccCcHHHHHHHHHcCcEEEeccCCCCHHHHHHH
Q psy14941 349 --PQR---DIFAHPNMKLFISHGG----LLGITEAVYEGIPVLGIPVFGDQWANIKKLESLKAGKLLPYLEITEETVSDA 419 (513)
Q Consensus 349 --pq~---~lL~h~~~~~~IthgG----~~s~~Eal~~GvP~i~~P~~~DQ~~na~~~~~~G~G~~l~~~~~~~~~l~~a 419 (513)
++. +++ ..+++|+.... ..++.||+++|+|+|+....+ ....+.+.+.|...+ +.+.+.++
T Consensus 261 ~~~~~~~~~~~--~~ad~~v~~s~~Eg~g~~~lEA~a~G~Pvv~s~~~~----~~~~i~~~~~g~~~~----~~~~~a~~ 330 (372)
T cd03792 261 PVSDLEVNALQ--RASTVVLQKSIREGFGLTVTEALWKGKPVIAGPVGG----IPLQIEDGETGFLVD----TVEEAAVR 330 (372)
T ss_pred CCCHHHHHHHH--HhCeEEEeCCCccCCCHHHHHHHHcCCCEEEcCCCC----chhhcccCCceEEeC----CcHHHHHH
Confidence 433 455 77899886432 358999999999999976433 334455667788765 46778889
Q ss_pred HHHhc-CHHHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q psy14941 420 LKIVL-SPEYKENAEDLGTRFRDRPQSPLEVAIYWIE 455 (513)
Q Consensus 420 i~~ll-~~~y~~~a~~~~~~~~~~~~~~~~~a~~~ie 455 (513)
|.+++ |++.++.+.+-+.....+..+-...+..|++
T Consensus 331 i~~ll~~~~~~~~~~~~a~~~~~~~~s~~~~~~~~~~ 367 (372)
T cd03792 331 ILYLLRDPELRRKMGANAREHVRENFLITRHLKDYLY 367 (372)
T ss_pred HHHHHcCHHHHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 99999 8887777666655543333354444444443
No 81
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.76 E-value=4.2e-06 Score=84.00 Aligned_cols=139 Identities=19% Similarity=0.227 Sum_probs=85.2
Q ss_pred CCceEEEEeCcccccCCCCHHHHHHHHHHHhcCC-----CeEEEEEcCCCC---------CCCCCCCcEEEecCCCcc-c
Q psy14941 288 HNGVIYFSMGSMLKTSSFPPDKFKAFLKAFSKIP-----QRVLWKFEDNDT---------SIFKPYKNIRTSSWMPQR-D 352 (513)
Q Consensus 288 ~~~~v~vs~Gs~~~~~~~~~~~~~~~~~~~~~~~-----~~~i~~~~~~~~---------~~~~~~~nv~~~~~~pq~-~ 352 (513)
+++.++++.|.... .+....+++.+.+...+.+ .++++.-.+... .+ . .+++.+.+...+. +
T Consensus 192 ~~~~~i~~vGrl~~-~Kg~~~li~a~~~l~~~~~~~~~~~~l~i~G~g~~~~~~~~~~~~~~-~-~~~v~~~g~~~~~~~ 268 (374)
T TIGR03088 192 DESVVVGTVGRLQA-VKDQPTLVRAFALLVRQLPEGAERLRLVIVGDGPARGACEQMVRAAG-L-AHLVWLPGERDDVPA 268 (374)
T ss_pred CCCeEEEEEecCCc-ccCHHHHHHHHHHHHHhCcccccceEEEEecCCchHHHHHHHHHHcC-C-cceEEEcCCcCCHHH
Confidence 45677888888752 1223333333333333332 245554333211 11 3 4567777654443 6
Q ss_pred cccCCCceEEecc----CCcccHHHHHHcCcceEeeccccCcHHHHHHHHHcCcEEEeccCCCCHHHHHHHHHHhc-CHH
Q psy14941 353 IFAHPNMKLFISH----GGLLGITEAVYEGIPVLGIPVFGDQWANIKKLESLKAGKLLPYLEITEETVSDALKIVL-SPE 427 (513)
Q Consensus 353 lL~h~~~~~~Ith----gG~~s~~Eal~~GvP~i~~P~~~DQ~~na~~~~~~G~G~~l~~~~~~~~~l~~ai~~ll-~~~ 427 (513)
++ ..+|++|.- |-.+++.||+++|+|+|+....+ +...+++...|..++. -+.+++.++|.+++ |+.
T Consensus 269 ~~--~~adi~v~pS~~Eg~~~~~lEAma~G~Pvv~s~~~g----~~e~i~~~~~g~~~~~--~d~~~la~~i~~l~~~~~ 340 (374)
T TIGR03088 269 LM--QALDLFVLPSLAEGISNTILEAMASGLPVIATAVGG----NPELVQHGVTGALVPP--GDAVALARALQPYVSDPA 340 (374)
T ss_pred HH--HhcCEEEeccccccCchHHHHHHHcCCCEEEcCCCC----cHHHhcCCCceEEeCC--CCHHHHHHHHHHHHhCHH
Confidence 67 667888742 34578999999999999976543 4555556667888863 37889999999999 876
Q ss_pred HHHHHHHHHH
Q psy14941 428 YKENAEDLGT 437 (513)
Q Consensus 428 y~~~a~~~~~ 437 (513)
.++.+.+-+.
T Consensus 341 ~~~~~~~~a~ 350 (374)
T TIGR03088 341 ARRAHGAAGR 350 (374)
T ss_pred HHHHHHHHHH
Confidence 5554444333
No 82
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=98.74 E-value=9e-07 Score=88.05 Aligned_cols=136 Identities=16% Similarity=0.255 Sum_probs=85.7
Q ss_pred CCceEEEEeCcccccCCCCHHHHHHHHHHHhcCC-----CeEEEEEcCCCC----------CCCCCCCcEEEecCCCcc-
Q psy14941 288 HNGVIYFSMGSMLKTSSFPPDKFKAFLKAFSKIP-----QRVLWKFEDNDT----------SIFKPYKNIRTSSWMPQR- 351 (513)
Q Consensus 288 ~~~~v~vs~Gs~~~~~~~~~~~~~~~~~~~~~~~-----~~~i~~~~~~~~----------~~~~~~~nv~~~~~~pq~- 351 (513)
.++.+++..|+.. +.+....+++++..++ .++++.-..... .+ . .+||.+.+++|+.
T Consensus 193 ~~~~~i~~~G~~~-----~~K~~~~~l~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~-~-~~~v~~~g~~~~~~ 265 (365)
T cd03809 193 LPRPYFLYVGTIE-----PRKNLERLLEAFARLPAKGPDPKLVIVGKRGWLNEELLARLRELG-L-GDRVRFLGYVSDEE 265 (365)
T ss_pred CCCCeEEEeCCCc-----cccCHHHHHHHHHHHHHhcCCCCEEEecCCccccHHHHHHHHHcC-C-CCeEEECCCCChhH
Confidence 4556677778875 3333455555555443 244444322211 12 4 7899999999886
Q ss_pred --ccccCCCceEEecc----CCcccHHHHHHcCcceEeeccccCcHHHHHHHHHcCcEEEeccCCCCHHHHHHHHHHhc-
Q psy14941 352 --DIFAHPNMKLFISH----GGLLGITEAVYEGIPVLGIPVFGDQWANIKKLESLKAGKLLPYLEITEETVSDALKIVL- 424 (513)
Q Consensus 352 --~lL~h~~~~~~Ith----gG~~s~~Eal~~GvP~i~~P~~~DQ~~na~~~~~~G~G~~l~~~~~~~~~l~~ai~~ll- 424 (513)
+++ ..+++++.- |..+++.||+++|+|+|+....+ ....+. ..|..++. -+.+++.++|.+++
T Consensus 266 ~~~~~--~~~d~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~~----~~e~~~--~~~~~~~~--~~~~~~~~~i~~l~~ 335 (365)
T cd03809 266 LAALY--RGARAFVFPSLYEGFGLPVLEAMACGTPVIASNISS----LPEVAG--DAALYFDP--LDPEALAAAIERLLE 335 (365)
T ss_pred HHHHH--hhhhhhcccchhccCCCCHHHHhcCCCcEEecCCCC----ccceec--CceeeeCC--CCHHHHHHHHHHHhc
Confidence 455 566776643 33568999999999999965422 111122 23555553 27899999999999
Q ss_pred CHHHHHHHHHHHHHHh
Q psy14941 425 SPEYKENAEDLGTRFR 440 (513)
Q Consensus 425 ~~~y~~~a~~~~~~~~ 440 (513)
|+..+.++.+.+....
T Consensus 336 ~~~~~~~~~~~~~~~~ 351 (365)
T cd03809 336 DPALREELRERGLARA 351 (365)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9888777776665443
No 83
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=98.72 E-value=3e-05 Score=78.20 Aligned_cols=139 Identities=19% Similarity=0.229 Sum_probs=89.4
Q ss_pred CCceEEEEeCcccccCCCCHHHHHHHHHHHhcCC--CeEEEEEcCCCCC-----------C--CCCCCcEEE-ecCCCcc
Q psy14941 288 HNGVIYFSMGSMLKTSSFPPDKFKAFLKAFSKIP--QRVLWKFEDNDTS-----------I--FKPYKNIRT-SSWMPQR 351 (513)
Q Consensus 288 ~~~~v~vs~Gs~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~-----------~--~~~~~nv~~-~~~~pq~ 351 (513)
++..+++..|... +.+-...+++++.+++ .++++..++...+ + .. ..++.. .+++|+.
T Consensus 199 ~~~~~i~~~Grl~-----~~Kg~~~li~a~~~l~~~~~l~i~g~g~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~ 272 (388)
T TIGR02149 199 RSRPYILFVGRIT-----RQKGVPHLLDAVHYIPKDVQVVLCAGAPDTPEVAEEVRQAVALLDRN-RTGIIWINKMLPKE 272 (388)
T ss_pred CCceEEEEEcccc-----cccCHHHHHHHHHHHhhcCcEEEEeCCCCcHHHHHHHHHHHHHhccc-cCceEEecCCCCHH
Confidence 3455677778775 4455677777877764 3555544432110 1 01 234554 4677765
Q ss_pred ---ccccCCCceEEecc----CCcccHHHHHHcCcceEeeccccCcHHHHHHHHHcCcEEEeccCCCCH----HHHHHHH
Q psy14941 352 ---DIFAHPNMKLFISH----GGLLGITEAVYEGIPVLGIPVFGDQWANIKKLESLKAGKLLPYLEITE----ETVSDAL 420 (513)
Q Consensus 352 ---~lL~h~~~~~~Ith----gG~~s~~Eal~~GvP~i~~P~~~DQ~~na~~~~~~G~G~~l~~~~~~~----~~l~~ai 420 (513)
+++ ..+|+++.- |...++.||+++|+|+|+.... .....++..+.|..++..+.+. +++.++|
T Consensus 273 ~~~~~~--~~aDv~v~ps~~e~~g~~~lEA~a~G~PvI~s~~~----~~~e~i~~~~~G~~~~~~~~~~~~~~~~l~~~i 346 (388)
T TIGR02149 273 ELVELL--SNAEVFVCPSIYEPLGIVNLEAMACGTPVVASATG----GIPEVVVDGETGFLVPPDNSDADGFQAELAKAI 346 (388)
T ss_pred HHHHHH--HhCCEEEeCCccCCCChHHHHHHHcCCCEEEeCCC----CHHHHhhCCCceEEcCCCCCcccchHHHHHHHH
Confidence 456 678888863 2346789999999999997643 3556666777899987544322 8899999
Q ss_pred HHhc-CHHHHHHHHHHHHH
Q psy14941 421 KIVL-SPEYKENAEDLGTR 438 (513)
Q Consensus 421 ~~ll-~~~y~~~a~~~~~~ 438 (513)
.+++ |++-++++.+-+..
T Consensus 347 ~~l~~~~~~~~~~~~~a~~ 365 (388)
T TIGR02149 347 NILLADPELAKKMGIAGRK 365 (388)
T ss_pred HHHHhCHHHHHHHHHHHHH
Confidence 9999 87766655554444
No 84
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=98.71 E-value=3e-05 Score=84.78 Aligned_cols=166 Identities=17% Similarity=0.230 Sum_probs=105.2
Q ss_pred HHHHHHhhcCCCceEEEEeCcccccCCCCHHHHHHHHHHHhcCC-----CeEEEEEcCCC----C---------------
Q psy14941 278 EEMERFLNESHNGVIYFSMGSMLKTSSFPPDKFKAFLKAFSKIP-----QRVLWKFEDND----T--------------- 333 (513)
Q Consensus 278 ~~l~~~l~~~~~~~v~vs~Gs~~~~~~~~~~~~~~~~~~~~~~~-----~~~i~~~~~~~----~--------------- 333 (513)
.++..|+.. ++..++++.|... +.+-...+++|+..+. ..+.+.+++.+ +
T Consensus 468 ~~l~r~~~~-pdkpvIL~VGRL~-----p~KGi~~LIeAf~~L~~l~~~~nL~LIiG~gdd~d~l~~~~~~~l~~L~~li 541 (1050)
T TIGR02468 468 SEIMRFFTN-PRKPMILALARPD-----PKKNITTLVKAFGECRPLRELANLTLIMGNRDDIDEMSSGSSSVLTSVLKLI 541 (1050)
T ss_pred HHHHhhccc-CCCcEEEEEcCCc-----cccCHHHHHHHHHHhHhhccCCCEEEEEecCchhhhhhccchHHHHHHHHHH
Confidence 356677764 4455667778876 5666777888887653 13433444311 1
Q ss_pred --CCCCCCCcEEEecCCCcccc---ccC--CCceEEeccC---C-cccHHHHHHcCcceEeeccccCcHHHHHHHHHcCc
Q psy14941 334 --SIFKPYKNIRTSSWMPQRDI---FAH--PNMKLFISHG---G-LLGITEAVYEGIPVLGIPVFGDQWANIKKLESLKA 402 (513)
Q Consensus 334 --~~~~~~~nv~~~~~~pq~~l---L~h--~~~~~~Ithg---G-~~s~~Eal~~GvP~i~~P~~~DQ~~na~~~~~~G~ 402 (513)
.+ + .++|.+.+++++.++ +.. ...++||.-. | ..++.||+++|+|+|+....+ ....++...-
T Consensus 542 ~~lg-L-~g~V~FlG~v~~edvp~lYr~Ad~s~DVFV~PS~~EgFGLvlLEAMAcGlPVVASdvGG----~~EII~~g~n 615 (1050)
T TIGR02468 542 DKYD-L-YGQVAYPKHHKQSDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPMVATKNGG----PVDIHRVLDN 615 (1050)
T ss_pred HHhC-C-CCeEEecCCCCHHHHHHHHHHhhhcCCeeeCCcccCCCCHHHHHHHHhCCCEEEeCCCC----cHHHhccCCc
Confidence 01 3 578999999988754 411 1235787742 2 368999999999999986543 3334444557
Q ss_pred EEEeccCCCCHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q psy14941 403 GKLLPYLEITEETVSDALKIVL-SPEYKENAEDLGTRFRDRPQSPLEVAIYWIEYVI 458 (513)
Q Consensus 403 G~~l~~~~~~~~~l~~ai~~ll-~~~y~~~a~~~~~~~~~~~~~~~~~a~~~ie~~~ 458 (513)
|+.++. -+.++|.++|.+++ |+..++++.+-+..... .++-...+..+++.+.
T Consensus 616 GlLVdP--~D~eaLA~AL~~LL~Dpelr~~m~~~gr~~v~-~FSWe~ia~~yl~~i~ 669 (1050)
T TIGR02468 616 GLLVDP--HDQQAIADALLKLVADKQLWAECRQNGLKNIH-LFSWPEHCKTYLSRIA 669 (1050)
T ss_pred EEEECC--CCHHHHHHHHHHHhhCHHHHHHHHHHHHHHHH-HCCHHHHHHHHHHHHH
Confidence 888874 47899999999999 98776666665544332 2454555555554443
No 85
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=98.64 E-value=4.3e-06 Score=83.70 Aligned_cols=149 Identities=16% Similarity=0.154 Sum_probs=97.2
Q ss_pred CceEEEEeCcccccCCCCHHHHHHHHHHHhcC----C-CeEEEEEcCCC-----C---CCCCCCCcEEEecCCCcc---c
Q psy14941 289 NGVIYFSMGSMLKTSSFPPDKFKAFLKAFSKI----P-QRVLWKFEDND-----T---SIFKPYKNIRTSSWMPQR---D 352 (513)
Q Consensus 289 ~~~v~vs~Gs~~~~~~~~~~~~~~~~~~~~~~----~-~~~i~~~~~~~-----~---~~~~~~~nv~~~~~~pq~---~ 352 (513)
++.++++.+-.. ...+.+..+++++.++ + .++++...++. + .+ . .+|+++.+.+++. .
T Consensus 197 ~~~vl~~~hr~~----~~~k~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~~~~~~~-~-~~~v~~~~~~~~~~~~~ 270 (365)
T TIGR00236 197 KRYILLTLHRRE----NVGEPLENIFKAIREIVEEFEDVQIVYPVHLNPVVREPLHKHLG-D-SKRVHLIEPLEYLDFLN 270 (365)
T ss_pred CCEEEEecCchh----hhhhHHHHHHHHHHHHHHHCCCCEEEEECCCChHHHHHHHHHhC-C-CCCEEEECCCChHHHHH
Confidence 456666554321 1124467777777654 2 36666533321 1 12 3 5689998877764 4
Q ss_pred cccCCCceEEeccCCcccHHHHHHcCcceEeeccccCcHHHHHHHHHcCcEEEeccCCCCHHHHHHHHHHhc-CHHHHHH
Q psy14941 353 IFAHPNMKLFISHGGLLGITEAVYEGIPVLGIPVFGDQWANIKKLESLKAGKLLPYLEITEETVSDALKIVL-SPEYKEN 431 (513)
Q Consensus 353 lL~h~~~~~~IthgG~~s~~Eal~~GvP~i~~P~~~DQ~~na~~~~~~G~G~~l~~~~~~~~~l~~ai~~ll-~~~y~~~ 431 (513)
++ ..++++++..|. .+.||+++|+|+|.++-.++++. +...|.|..+. -+.++|.+++.+++ |+..+++
T Consensus 271 ~l--~~ad~vv~~Sg~-~~~EA~a~g~PvI~~~~~~~~~e----~~~~g~~~lv~---~d~~~i~~ai~~ll~~~~~~~~ 340 (365)
T TIGR00236 271 LA--ANSHLILTDSGG-VQEEAPSLGKPVLVLRDTTERPE----TVEAGTNKLVG---TDKENITKAAKRLLTDPDEYKK 340 (365)
T ss_pred HH--HhCCEEEECChh-HHHHHHHcCCCEEECCCCCCChH----HHhcCceEEeC---CCHHHHHHHHHHHHhChHHHHH
Confidence 45 678899997764 47999999999999976665552 33467777663 37899999999999 9888877
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHH
Q psy14941 432 AEDLGTRFRDRPQSPLEVAIYWIE 455 (513)
Q Consensus 432 a~~~~~~~~~~~~~~~~~a~~~ie 455 (513)
+.+-...+.+. ++.++.++.++
T Consensus 341 ~~~~~~~~g~~--~a~~ri~~~l~ 362 (365)
T TIGR00236 341 MSNASNPYGDG--EASERIVEELL 362 (365)
T ss_pred hhhcCCCCcCc--hHHHHHHHHHH
Confidence 76655444332 45566665554
No 86
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=98.60 E-value=2.2e-06 Score=85.31 Aligned_cols=133 Identities=17% Similarity=0.211 Sum_probs=92.3
Q ss_pred eEEEEeCcccccCCCCHHHHHHHHHHHhcCCCeEEEEEcCCC---CCCCCCCCcEEEecCCCcc---ccccCCCceEEec
Q psy14941 291 VIYFSMGSMLKTSSFPPDKFKAFLKAFSKIPQRVLWKFEDND---TSIFKPYKNIRTSSWMPQR---DIFAHPNMKLFIS 364 (513)
Q Consensus 291 ~v~vs~Gs~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~~~~~nv~~~~~~pq~---~lL~h~~~~~~It 364 (513)
..++..|+.. +.+....+++++.+++.++++.-++.. +.+.. .+||.+.+++|+. +++ .++++++.
T Consensus 196 ~~il~~G~~~-----~~K~~~~li~a~~~~~~~l~ivG~g~~~~~l~~~~-~~~V~~~g~~~~~~~~~~~--~~ad~~v~ 267 (351)
T cd03804 196 DYYLSVGRLV-----PYKRIDLAIEAFNKLGKRLVVIGDGPELDRLRAKA-GPNVTFLGRVSDEELRDLY--ARARAFLF 267 (351)
T ss_pred CEEEEEEcCc-----cccChHHHHHHHHHCCCcEEEEECChhHHHHHhhc-CCCEEEecCCCHHHHHHHH--HhCCEEEE
Confidence 3456677775 445677888888888877666544422 11124 7899999999985 456 66777774
Q ss_pred c--CC-cccHHHHHHcCcceEeeccccCcHHHHHHHHHcCcEEEeccCCCCHHHHHHHHHHhc-CH-HHHHHHHHHHH
Q psy14941 365 H--GG-LLGITEAVYEGIPVLGIPVFGDQWANIKKLESLKAGKLLPYLEITEETVSDALKIVL-SP-EYKENAEDLGT 437 (513)
Q Consensus 365 h--gG-~~s~~Eal~~GvP~i~~P~~~DQ~~na~~~~~~G~G~~l~~~~~~~~~l~~ai~~ll-~~-~y~~~a~~~~~ 437 (513)
- -| ..++.||+++|+|+|+....+ ....+++.+.|..++.. +.+++.++|.+++ |+ ..++++++.++
T Consensus 268 ps~e~~g~~~~Eama~G~Pvi~~~~~~----~~e~i~~~~~G~~~~~~--~~~~la~~i~~l~~~~~~~~~~~~~~~~ 339 (351)
T cd03804 268 PAEEDFGIVPVEAMASGTPVIAYGKGG----ALETVIDGVTGILFEEQ--TVESLAAAVERFEKNEDFDPQAIRAHAE 339 (351)
T ss_pred CCcCCCCchHHHHHHcCCCEEEeCCCC----CcceeeCCCCEEEeCCC--CHHHHHHHHHHHHhCcccCHHHHHHHHH
Confidence 2 23 356789999999999986543 33445556789888743 7888999999999 77 45555554443
No 87
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=98.60 E-value=3.8e-06 Score=83.88 Aligned_cols=125 Identities=15% Similarity=0.174 Sum_probs=79.8
Q ss_pred ceEEEEeCcccccCCCCHHHHHHHHHHHhcCCC--eEEEEEcCCC---C------CCCCCCCcEEEecCCCc--c---cc
Q psy14941 290 GVIYFSMGSMLKTSSFPPDKFKAFLKAFSKIPQ--RVLWKFEDND---T------SIFKPYKNIRTSSWMPQ--R---DI 353 (513)
Q Consensus 290 ~~v~vs~Gs~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~~~---~------~~~~~~~nv~~~~~~pq--~---~l 353 (513)
+.+++..|.... ...+....+++++.++.. ++++.-++.+ + .+ + +++|.+.+++++ . +.
T Consensus 180 ~~~i~~~Grl~~---~~~k~~~~l~~a~~~~~~~~~l~ivG~g~~~~~l~~~~~~~~-l-~~~v~f~G~~~~~~~~~~~~ 254 (359)
T PRK09922 180 PAVFLYVGRLKF---EGQKNVKELFDGLSQTTGEWQLHIIGDGSDFEKCKAYSRELG-I-EQRIIWHGWQSQPWEVVQQK 254 (359)
T ss_pred CcEEEEEEEEec---ccCcCHHHHHHHHHhhCCCeEEEEEeCCccHHHHHHHHHHcC-C-CCeEEEecccCCcHHHHHHH
Confidence 455667776541 123345566666665532 4444433321 1 12 4 679999999865 2 22
Q ss_pred ccCCCceEEecc----CCcccHHHHHHcCcceEeec-cccCcHHHHHHHHHcCcEEEeccCCCCHHHHHHHHHHhc-CHH
Q psy14941 354 FAHPNMKLFISH----GGLLGITEAVYEGIPVLGIP-VFGDQWANIKKLESLKAGKLLPYLEITEETVSDALKIVL-SPE 427 (513)
Q Consensus 354 L~h~~~~~~Ith----gG~~s~~Eal~~GvP~i~~P-~~~DQ~~na~~~~~~G~G~~l~~~~~~~~~l~~ai~~ll-~~~ 427 (513)
+ ..+++++.. |-.+++.||+++|+|+|+.- ..+ ....+++...|..++. -+.+++.++|.+++ |++
T Consensus 255 ~--~~~d~~v~~s~~Egf~~~~lEAma~G~Pvv~s~~~~g----~~eiv~~~~~G~lv~~--~d~~~la~~i~~l~~~~~ 326 (359)
T PRK09922 255 I--KNVSALLLTSKFEGFPMTLLEAMSYGIPCISSDCMSG----PRDIIKPGLNGELYTP--GNIDEFVGKLNKVISGEV 326 (359)
T ss_pred H--hcCcEEEECCcccCcChHHHHHHHcCCCEEEeCCCCC----hHHHccCCCceEEECC--CCHHHHHHHHHHHHhCcc
Confidence 3 456777754 33579999999999999985 332 2234555667888863 48999999999999 765
No 88
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=98.53 E-value=1.6e-05 Score=80.54 Aligned_cols=143 Identities=13% Similarity=0.145 Sum_probs=92.1
Q ss_pred CceEEEEeCcccccCCCCHHHHHHHHHHHhcCC----C-eEEEEEcCCC---C------CCCCCCCcEEEecCCCccc--
Q psy14941 289 NGVIYFSMGSMLKTSSFPPDKFKAFLKAFSKIP----Q-RVLWKFEDND---T------SIFKPYKNIRTSSWMPQRD-- 352 (513)
Q Consensus 289 ~~~v~vs~Gs~~~~~~~~~~~~~~~~~~~~~~~----~-~~i~~~~~~~---~------~~~~~~~nv~~~~~~pq~~-- 352 (513)
++..+++.|... +.+-...+++++..+. . ++.+.-++.. + .+ + .++|.+.+|+|+.+
T Consensus 221 ~~~~il~vGrl~-----~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~G~~~~~l~~~~~~~~-l-~~~V~~~G~~~~~el~ 293 (406)
T PRK15427 221 TPLEIISVARLT-----EKKGLHVAIEACRQLKEQGVAFRYRILGIGPWERRLRTLIEQYQ-L-EDVVEMPGFKPSHEVK 293 (406)
T ss_pred CCeEEEEEeCcc-----hhcCHHHHHHHHHHHHhhCCCEEEEEEECchhHHHHHHHHHHcC-C-CCeEEEeCCCCHHHHH
Confidence 456677778775 4444555666665432 2 4444333321 1 12 4 67899999999864
Q ss_pred -cccCCCceEEecc---------CCc-ccHHHHHHcCcceEeeccccCcHHHHHHHHHcCcEEEeccCCCCHHHHHHHHH
Q psy14941 353 -IFAHPNMKLFISH---------GGL-LGITEAVYEGIPVLGIPVFGDQWANIKKLESLKAGKLLPYLEITEETVSDALK 421 (513)
Q Consensus 353 -lL~h~~~~~~Ith---------gG~-~s~~Eal~~GvP~i~~P~~~DQ~~na~~~~~~G~G~~l~~~~~~~~~l~~ai~ 421 (513)
++ ..+++|+.- -|. ++++||+++|+|+|+....+ ....+++...|..++. -+.+++.++|.
T Consensus 294 ~~l--~~aDv~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~t~~~g----~~E~v~~~~~G~lv~~--~d~~~la~ai~ 365 (406)
T PRK15427 294 AML--DDADVFLLPSVTGADGDMEGIPVALMEAMAVGIPVVSTLHSG----IPELVEADKSGWLVPE--NDAQALAQRLA 365 (406)
T ss_pred HHH--HhCCEEEECCccCCCCCccCccHHHHHHHhCCCCEEEeCCCC----chhhhcCCCceEEeCC--CCHHHHHHHHH
Confidence 56 678888853 233 57899999999999985543 4445555668888874 37899999999
Q ss_pred Hhc--CHHHHHHHHHHHHHHhcCCCCh
Q psy14941 422 IVL--SPEYKENAEDLGTRFRDRPQSP 446 (513)
Q Consensus 422 ~ll--~~~y~~~a~~~~~~~~~~~~~~ 446 (513)
+++ |++.++++.+-+.....+.++.
T Consensus 366 ~l~~~d~~~~~~~~~~ar~~v~~~f~~ 392 (406)
T PRK15427 366 AFSQLDTDELAPVVKRAREKVETDFNQ 392 (406)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHhcCH
Confidence 998 6665555555444433333443
No 89
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=98.49 E-value=0.00027 Score=75.74 Aligned_cols=136 Identities=15% Similarity=0.173 Sum_probs=85.6
Q ss_pred CceEEEEeCcccccCCCCHHHHHHHHHHHhcCC-----CeEEEEEcCCC------C---------------CCCCCCCcE
Q psy14941 289 NGVIYFSMGSMLKTSSFPPDKFKAFLKAFSKIP-----QRVLWKFEDND------T---------------SIFKPYKNI 342 (513)
Q Consensus 289 ~~~v~vs~Gs~~~~~~~~~~~~~~~~~~~~~~~-----~~~i~~~~~~~------~---------------~~~~~~~nv 342 (513)
+..++++.|... +.+-...+++++.+.+ .++++.-++.. . .+ + .++|
T Consensus 549 ~kpiIl~VGRL~-----~~KGid~LIeA~~~l~~l~~~~~LVIVGGg~~~~~s~d~ee~~~i~~L~~la~~~g-L-~g~V 621 (784)
T TIGR02470 549 NKPIIFSMARLD-----RVKNLTGLVECYGRSPKLRELVNLVVVAGKLDAKESKDREEQAEIEKMHNLIDQYQ-L-HGQI 621 (784)
T ss_pred CCcEEEEEeCCC-----ccCCHHHHHHHHHHhHhhCCCeEEEEEeCCcccccccchhHHHHHHHHHHHHHHhC-C-CCeE
Confidence 445667778775 5556777788876542 24544433221 0 01 3 4688
Q ss_pred EEecCC-Ccc---ccccC--CCceEEecc----CCcccHHHHHHcCcceEeeccccCcHHHHHHHHHcCcEEEeccCCCC
Q psy14941 343 RTSSWM-PQR---DIFAH--PNMKLFISH----GGLLGITEAVYEGIPVLGIPVFGDQWANIKKLESLKAGKLLPYLEIT 412 (513)
Q Consensus 343 ~~~~~~-pq~---~lL~h--~~~~~~Ith----gG~~s~~Eal~~GvP~i~~P~~~DQ~~na~~~~~~G~G~~l~~~~~~ 412 (513)
.+.++. |.. +++.+ ..+++|+.- +-..++.||+++|+|+|+.... ..+..+++-.-|..++.. +
T Consensus 622 ~flG~~~~~~~~~elyr~iAd~adVfV~PS~~EpFGLvvLEAMAcGlPVVAT~~G----G~~EiV~dg~tGfLVdp~--D 695 (784)
T TIGR02470 622 RWIGAQLNRVRNGELYRYIADTKGIFVQPALYEAFGLTVLEAMTCGLPTFATRFG----GPLEIIQDGVSGFHIDPY--H 695 (784)
T ss_pred EEccCcCCcccHHHHHHHhhccCcEEEECCcccCCCHHHHHHHHcCCCEEEcCCC----CHHHHhcCCCcEEEeCCC--C
Confidence 888874 432 34421 134677753 2236899999999999997544 356666666779998844 6
Q ss_pred HHHHHHHHHHh----c-CHHHHHHHHHHHH
Q psy14941 413 EETVSDALKIV----L-SPEYKENAEDLGT 437 (513)
Q Consensus 413 ~~~l~~ai~~l----l-~~~y~~~a~~~~~ 437 (513)
.+++.++|.++ + |++.++++.+-+.
T Consensus 696 ~eaLA~aL~~ll~kll~dp~~~~~ms~~a~ 725 (784)
T TIGR02470 696 GEEAAEKIVDFFEKCDEDPSYWQKISQGGL 725 (784)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 78888888865 4 7777666655543
No 90
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.47 E-value=2.8e-05 Score=78.83 Aligned_cols=109 Identities=12% Similarity=0.133 Sum_probs=73.3
Q ss_pred CCcEEEecCCCcc-ccccCCCceEEec--c--CCc-ccHHHHHHcCcceEeeccccCcHHHHHHHHHcCcEEEeccCCCC
Q psy14941 339 YKNIRTSSWMPQR-DIFAHPNMKLFIS--H--GGL-LGITEAVYEGIPVLGIPVFGDQWANIKKLESLKAGKLLPYLEIT 412 (513)
Q Consensus 339 ~~nv~~~~~~pq~-~lL~h~~~~~~It--h--gG~-~s~~Eal~~GvP~i~~P~~~DQ~~na~~~~~~G~G~~l~~~~~~ 412 (513)
.++|.+.+++++. .++ .+++++|. + .|. +.+.||+++|+|+|+.+...+.. .+..|.|..+. -+
T Consensus 279 ~~~V~~~G~v~~~~~~~--~~adv~v~Ps~~~eG~~~~~lEAma~G~PVV~t~~~~~~i-----~~~~~~g~lv~---~~ 348 (397)
T TIGR03087 279 LPGVTVTGSVADVRPYL--AHAAVAVAPLRIARGIQNKVLEAMAMAKPVVASPEAAEGI-----DALPGAELLVA---AD 348 (397)
T ss_pred CCCeEEeeecCCHHHHH--HhCCEEEecccccCCcccHHHHHHHcCCCEEecCcccccc-----cccCCcceEeC---CC
Confidence 5789999999864 556 67788873 2 344 46999999999999998643221 12346787774 37
Q ss_pred HHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q psy14941 413 EETVSDALKIVL-SPEYKENAEDLGTRFRDRPQSPLEVAIYWIEYVI 458 (513)
Q Consensus 413 ~~~l~~ai~~ll-~~~y~~~a~~~~~~~~~~~~~~~~~a~~~ie~~~ 458 (513)
.+++.++|.+++ |+..++++.+-+.....+.++ -+..+.-++.++
T Consensus 349 ~~~la~ai~~ll~~~~~~~~~~~~ar~~v~~~fs-w~~~~~~~~~~l 394 (397)
T TIGR03087 349 PADFAAAILALLANPAEREELGQAARRRVLQHYH-WPRNLARLDALL 394 (397)
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHh
Confidence 899999999999 987666665555443322223 445455555554
No 91
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=98.47 E-value=5.8e-05 Score=73.47 Aligned_cols=316 Identities=14% Similarity=0.131 Sum_probs=177.3
Q ss_pred EcCCCCCChHHHHHHHHHHHHhC--CCcEEEEEeecCCcc-----ccCCeEEEEecCcccchhhHHHHHhhchhHHHHHH
Q psy14941 32 IFPTPAKSHQIIFDTILVELYQR--GHDLTVITQYPETLV-----HYERMKVLDIKGTHTYNSTIEDIYELSADSIKRIH 104 (513)
Q Consensus 32 ~~p~~~~gH~~~~~~la~~L~~r--GH~Vt~~~~~~~~~~-----~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (513)
-+-..|-|-++...+|.++|.++ +..+++-+..+.... ..+.+....+|..-
T Consensus 53 WiHaaSVGEv~a~~pLv~~l~~~~P~~~ilvTt~T~Tg~e~a~~~~~~~v~h~YlP~D~--------------------- 111 (419)
T COG1519 53 WIHAASVGEVLAALPLVRALRERFPDLRILVTTMTPTGAERAAALFGDSVIHQYLPLDL--------------------- 111 (419)
T ss_pred EEEecchhHHHHHHHHHHHHHHhCCCCCEEEEecCccHHHHHHHHcCCCeEEEecCcCc---------------------
Confidence 44555789999999999999999 777766553222111 01223333333110
Q ss_pred HHHHHHHHHHHHHhCCHhHHHHhccCCCccEEEEcc-chhchHHhhhhccCCCEEEEeCCCCchhhhhhcCCCCCCCccC
Q psy14941 105 INFIDQEIQVENIFLHENMKSIWNMENKYDLIITEM-FLTDAFLVIPYLYKVPYISIASSTLHPQHSERLGLPDNPSYIP 183 (513)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~Dlvi~d~-~~~~~~~~~a~~l~iP~i~~~~~~~~~~~~~~~g~p~~~s~~P 183 (513)
...+.+.++ ..+||++|.-. =.+++.+.-++..|+|.+.++.--.
T Consensus 112 ---------------~~~v~rFl~-~~~P~l~Ii~EtElWPnli~e~~~~~~p~~LvNaRLS------------------ 157 (419)
T COG1519 112 ---------------PIAVRRFLR-KWRPKLLIIMETELWPNLINELKRRGIPLVLVNARLS------------------ 157 (419)
T ss_pred ---------------hHHHHHHHH-hcCCCEEEEEeccccHHHHHHHHHcCCCEEEEeeeec------------------
Confidence 012344554 57799766544 3445555567788999888764211
Q ss_pred cccCCCCCCCCH--HHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhCCCCCCHHhhhcCccEEEEeccCccCCCccC-CC
Q psy14941 184 SYVSAYTDHMSF--TERLSNTFVGLYYKWYYDYKSHGAANRIIHKYFPEIPRIQDLLNTCSLTLVNTHHTINIARPL-PA 260 (513)
Q Consensus 184 ~~~~~~~~~~~~--~~r~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~s~~~l~~~~p~-~p 260 (513)
+. |+ |.+... .. ..+.++.++++..+...-+--+.+ .+
T Consensus 158 -------~r-S~~~y~k~~~---------------------~~----------~~~~~~i~li~aQse~D~~Rf~~LGa~ 198 (419)
T COG1519 158 -------DR-SFARYAKLKF---------------------LA----------RLLFKNIDLILAQSEEDAQRFRSLGAK 198 (419)
T ss_pred -------hh-hhHHHHHHHH---------------------HH----------HHHHHhcceeeecCHHHHHHHHhcCCc
Confidence 00 11 111111 11 112344566666655433322222 13
Q ss_pred ceEEeCcccccC--CCCCcHHHHHHhhcCCC-ceEEEEeCcccccCCCCHHHHHHHHHHHhc-CCC-eEEEEEcCCC---
Q psy14941 261 NVVEIGGIHVKP--AKKLNEEMERFLNESHN-GVIYFSMGSMLKTSSFPPDKFKAFLKAFSK-IPQ-RVLWKFEDND--- 332 (513)
Q Consensus 261 ~~~~vG~l~~~~--~~~l~~~l~~~l~~~~~-~~v~vs~Gs~~~~~~~~~~~~~~~~~~~~~-~~~-~~i~~~~~~~--- 332 (513)
++...|-+-.+. ...++.+...+-..-+. ..+.+..+|.- ..++..-....++.+ .|. ..||+-...+
T Consensus 199 ~v~v~GNlKfd~~~~~~~~~~~~~~r~~l~~~r~v~iaaSTH~----GEeei~l~~~~~l~~~~~~~llIlVPRHpERf~ 274 (419)
T COG1519 199 PVVVTGNLKFDIEPPPQLAAELAALRRQLGGHRPVWVAASTHE----GEEEIILDAHQALKKQFPNLLLILVPRHPERFK 274 (419)
T ss_pred ceEEecceeecCCCChhhHHHHHHHHHhcCCCCceEEEecCCC----chHHHHHHHHHHHHhhCCCceEEEecCChhhHH
Confidence 366667665443 22233333333222121 45566656642 234444444444433 333 5666643311
Q ss_pred --------------------CCCCCCCCcEEEecCCCcc-ccccCCCceE------EeccCCcccHHHHHHcCcceEeec
Q psy14941 333 --------------------TSIFKPYKNIRTSSWMPQR-DIFAHPNMKL------FISHGGLLGITEAVYEGIPVLGIP 385 (513)
Q Consensus 333 --------------------~~~~~~~~nv~~~~~~pq~-~lL~h~~~~~------~IthgG~~s~~Eal~~GvP~i~~P 385 (513)
.+. . ..+|.+.+-+-.. .++ .-+++ ++-+||+| .+|++++|+|+|.=|
T Consensus 275 ~v~~l~~~~gl~~~~rS~~~~~~-~-~tdV~l~DtmGEL~l~y--~~adiAFVGGSlv~~GGHN-~LEpa~~~~pvi~Gp 349 (419)
T COG1519 275 AVENLLKRKGLSVTRRSQGDPPF-S-DTDVLLGDTMGELGLLY--GIADIAFVGGSLVPIGGHN-PLEPAAFGTPVIFGP 349 (419)
T ss_pred HHHHHHHHcCCeEEeecCCCCCC-C-CCcEEEEecHhHHHHHH--hhccEEEECCcccCCCCCC-hhhHHHcCCCEEeCC
Confidence 111 1 3366666654432 222 22333 34588876 789999999999999
Q ss_pred cccCcHHHHHHHHHcCcEEEeccCCCCHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCCCChHHHHHHHH
Q psy14941 386 VFGDQWANIKKLESLKAGKLLPYLEITEETVSDALKIVL-SPEYKENAEDLGTRFRDRPQSPLEVAIYWI 454 (513)
Q Consensus 386 ~~~DQ~~na~~~~~~G~G~~l~~~~~~~~~l~~ai~~ll-~~~y~~~a~~~~~~~~~~~~~~~~~a~~~i 454 (513)
...-|..-++++++.|.|+.++ +++.+.+++..++ |+..++++.+-+..+-.+-.+..++....+
T Consensus 350 ~~~Nf~ei~~~l~~~ga~~~v~----~~~~l~~~v~~l~~~~~~r~~~~~~~~~~v~~~~gal~r~l~~l 415 (419)
T COG1519 350 YTFNFSDIAERLLQAGAGLQVE----DADLLAKAVELLLADEDKREAYGRAGLEFLAQNRGALARTLEAL 415 (419)
T ss_pred ccccHHHHHHHHHhcCCeEEEC----CHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 9999999999999999999998 5888999999888 887777776555555444224444444433
No 92
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=98.40 E-value=0.00035 Score=70.30 Aligned_cols=112 Identities=19% Similarity=0.150 Sum_probs=72.9
Q ss_pred CCcEEEecCCCcc---ccccCCCceEEeccC----Cc-ccHHHHHHcCcceEeeccccCcHHHHHHHHHcCcEEEeccCC
Q psy14941 339 YKNIRTSSWMPQR---DIFAHPNMKLFISHG----GL-LGITEAVYEGIPVLGIPVFGDQWANIKKLESLKAGKLLPYLE 410 (513)
Q Consensus 339 ~~nv~~~~~~pq~---~lL~h~~~~~~Ithg----G~-~s~~Eal~~GvP~i~~P~~~DQ~~na~~~~~~G~G~~l~~~~ 410 (513)
..++.+.+++|+. +++ ..+|+++... |. .++.||+++|+|+|+.... .+...+++...|..+. ..
T Consensus 256 ~~~v~~~G~~~~~~l~~~~--~~aDv~v~pS~~~E~f~~~~lEAma~G~PVI~s~~g----g~~Eiv~~~~~G~~l~-~~ 328 (380)
T PRK15484 256 GDRCIMLGGQPPEKMHNYY--PLADLVVVPSQVEEAFCMVAVEAMAAGKPVLASTKG----GITEFVLEGITGYHLA-EP 328 (380)
T ss_pred CCcEEEeCCCCHHHHHHHH--HhCCEEEeCCCCccccccHHHHHHHcCCCEEEeCCC----CcHhhcccCCceEEEe-CC
Confidence 5688999999865 446 7788888633 32 5789999999999998653 3455566666787542 13
Q ss_pred CCHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q psy14941 411 ITEETVSDALKIVL-SPEYKENAEDLGTRFRDRPQSPLEVAIYWIEYVIK 459 (513)
Q Consensus 411 ~~~~~l~~ai~~ll-~~~y~~~a~~~~~~~~~~~~~~~~~a~~~ie~~~~ 459 (513)
.+.+++.++|.+++ |++.++..++..+...++ ++ .+..+.-.+.++.
T Consensus 329 ~d~~~la~~I~~ll~d~~~~~~~~~ar~~~~~~-fs-w~~~a~~~~~~l~ 376 (380)
T PRK15484 329 MTSDSIISDINRTLADPELTQIAEQAKDFVFSK-YS-WEGVTQRFEEQIH 376 (380)
T ss_pred CCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHh-CC-HHHHHHHHHHHHH
Confidence 47899999999999 887543333332222222 23 3444444454443
No 93
>PLN02275 transferase, transferring glycosyl groups
Probab=98.36 E-value=3.6e-05 Score=77.15 Aligned_cols=75 Identities=17% Similarity=0.281 Sum_probs=56.3
Q ss_pred CcEEEec-CCCcccc---ccCCCceEEec----c--CC-cccHHHHHHcCcceEeeccccCcHHHHHHHHHcCcEEEecc
Q psy14941 340 KNIRTSS-WMPQRDI---FAHPNMKLFIS----H--GG-LLGITEAVYEGIPVLGIPVFGDQWANIKKLESLKAGKLLPY 408 (513)
Q Consensus 340 ~nv~~~~-~~pq~~l---L~h~~~~~~It----h--gG-~~s~~Eal~~GvP~i~~P~~~DQ~~na~~~~~~G~G~~l~~ 408 (513)
+|+.+.. |+|+.++ + ..+|+++. . -| .+++.||+++|+|+|+.... .+...+++.+.|..++
T Consensus 286 ~~v~~~~~~~~~~~~~~~l--~~aDv~v~~~~s~~~e~~p~~llEAmA~G~PVVa~~~g----g~~eiv~~g~~G~lv~- 358 (371)
T PLN02275 286 RHVAFRTMWLEAEDYPLLL--GSADLGVSLHTSSSGLDLPMKVVDMFGCGLPVCAVSYS----CIGELVKDGKNGLLFS- 358 (371)
T ss_pred CceEEEcCCCCHHHHHHHH--HhCCEEEEeccccccccccHHHHHHHHCCCCEEEecCC----ChHHHccCCCCeEEEC-
Confidence 5677655 7887655 6 78899884 1 12 35799999999999997533 3666777777899986
Q ss_pred CCCCHHHHHHHHHHhc
Q psy14941 409 LEITEETVSDALKIVL 424 (513)
Q Consensus 409 ~~~~~~~l~~ai~~ll 424 (513)
+.+++.++|.+++
T Consensus 359 ---~~~~la~~i~~l~ 371 (371)
T PLN02275 359 ---SSSELADQLLELL 371 (371)
T ss_pred ---CHHHHHHHHHHhC
Confidence 4889999998875
No 94
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=98.35 E-value=8.2e-05 Score=75.78 Aligned_cols=84 Identities=15% Similarity=0.130 Sum_probs=58.0
Q ss_pred CCcEEEecCCCcc---ccccCCCceEEecc----CCcccHHHHHHcCcceEeeccccCcHHHHHHHH---HcCcEEEecc
Q psy14941 339 YKNIRTSSWMPQR---DIFAHPNMKLFISH----GGLLGITEAVYEGIPVLGIPVFGDQWANIKKLE---SLKAGKLLPY 408 (513)
Q Consensus 339 ~~nv~~~~~~pq~---~lL~h~~~~~~Ith----gG~~s~~Eal~~GvP~i~~P~~~DQ~~na~~~~---~~G~G~~l~~ 408 (513)
.++|.+.+++|+. .+| .+++++++- |=..++.||+++|+|+|+.-..+.- ...++ ..+.|...+
T Consensus 304 ~~~V~f~g~v~~~~l~~~l--~~adv~v~~s~~E~Fgi~~lEAMa~G~pvIa~~~ggp~---~~iv~~~~~g~~G~l~~- 377 (419)
T cd03806 304 EDKVEFVVNAPFEELLEEL--STASIGLHTMWNEHFGIGVVEYMAAGLIPLAHASGGPL---LDIVVPWDGGPTGFLAS- 377 (419)
T ss_pred CCeEEEecCCCHHHHHHHH--HhCeEEEECCccCCcccHHHHHHHcCCcEEEEcCCCCc---hheeeccCCCCceEEeC-
Confidence 5799999999876 456 567777642 2235889999999999987543311 11122 345787753
Q ss_pred CCCCHHHHHHHHHHhc-CH-HHHHH
Q psy14941 409 LEITEETVSDALKIVL-SP-EYKEN 431 (513)
Q Consensus 409 ~~~~~~~l~~ai~~ll-~~-~y~~~ 431 (513)
+.+++.++|.+++ ++ ..++.
T Consensus 378 ---d~~~la~ai~~ll~~~~~~~~~ 399 (419)
T cd03806 378 ---TAEEYAEAIEKILSLSEEERLR 399 (419)
T ss_pred ---CHHHHHHHHHHHHhCCHHHHHH
Confidence 7999999999999 54 34433
No 95
>PRK00654 glgA glycogen synthase; Provisional
Probab=98.35 E-value=5.7e-05 Score=78.14 Aligned_cols=125 Identities=11% Similarity=0.117 Sum_probs=74.9
Q ss_pred CceEEEEeCcccccCCCCHHHHHHHHHHHhcC---CCeEEEEEcCCC-----CC---CCCCCCcEEE-ecCCCcc---cc
Q psy14941 289 NGVIYFSMGSMLKTSSFPPDKFKAFLKAFSKI---PQRVLWKFEDND-----TS---IFKPYKNIRT-SSWMPQR---DI 353 (513)
Q Consensus 289 ~~~v~vs~Gs~~~~~~~~~~~~~~~~~~~~~~---~~~~i~~~~~~~-----~~---~~~~~~nv~~-~~~~pq~---~l 353 (513)
+..+++..|... +.+-...+++++.++ +.++++.-+++. +. +.. +.++.+ .++ +.. .+
T Consensus 281 ~~~~i~~vGRl~-----~~KG~~~li~a~~~l~~~~~~lvivG~g~~~~~~~l~~l~~~~-~~~v~~~~g~-~~~~~~~~ 353 (466)
T PRK00654 281 DAPLFAMVSRLT-----EQKGLDLVLEALPELLEQGGQLVLLGTGDPELEEAFRALAARY-PGKVGVQIGY-DEALAHRI 353 (466)
T ss_pred CCcEEEEeeccc-----cccChHHHHHHHHHHHhcCCEEEEEecCcHHHHHHHHHHHHHC-CCcEEEEEeC-CHHHHHHH
Confidence 456777778876 445555666666543 446666543321 11 113 456654 455 332 45
Q ss_pred ccCCCceEEecc---CCc-ccHHHHHHcCcceEeecccc--CcHHHHHHHHHcCcEEEeccCCCCHHHHHHHHHHhc
Q psy14941 354 FAHPNMKLFISH---GGL-LGITEAVYEGIPVLGIPVFG--DQWANIKKLESLKAGKLLPYLEITEETVSDALKIVL 424 (513)
Q Consensus 354 L~h~~~~~~Ith---gG~-~s~~Eal~~GvP~i~~P~~~--DQ~~na~~~~~~G~G~~l~~~~~~~~~l~~ai~~ll 424 (513)
+ ..+|+++.- -|. .+.+||+++|+|.|+....+ |.-.+...-...+.|..++. -+.+++.++|.+++
T Consensus 354 ~--~~aDv~v~PS~~E~~gl~~lEAma~G~p~V~~~~gG~~e~v~~~~~~~~~~~G~lv~~--~d~~~la~~i~~~l 426 (466)
T PRK00654 354 Y--AGADMFLMPSRFEPCGLTQLYALRYGTLPIVRRTGGLADTVIDYNPEDGEATGFVFDD--FNAEDLLRALRRAL 426 (466)
T ss_pred H--hhCCEEEeCCCCCCchHHHHHHHHCCCCEEEeCCCCccceeecCCCCCCCCceEEeCC--CCHHHHHHHHHHHH
Confidence 5 788998864 233 58899999999999975432 21111000022378988874 47899999999886
No 96
>PRK10125 putative glycosyl transferase; Provisional
Probab=98.33 E-value=0.00073 Score=68.39 Aligned_cols=102 Identities=14% Similarity=0.166 Sum_probs=66.1
Q ss_pred HHHHHHHHHHhcCCCeE-EEEEcCCCCCCCCCCCcEEEecCCCc-c---ccccCCCceEEeccC----CcccHHHHHHcC
Q psy14941 308 DKFKAFLKAFSKIPQRV-LWKFEDNDTSIFKPYKNIRTSSWMPQ-R---DIFAHPNMKLFISHG----GLLGITEAVYEG 378 (513)
Q Consensus 308 ~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~~nv~~~~~~pq-~---~lL~h~~~~~~Ithg----G~~s~~Eal~~G 378 (513)
+....+++++.+++.++ ++.+|.... . . .+++...++... . +++ ..+|+||.-. -.+++.||+++|
T Consensus 256 Kg~~~li~A~~~l~~~~~L~ivG~g~~-~-~-~~~v~~~g~~~~~~~l~~~y--~~aDvfV~pS~~Egfp~vilEAmA~G 330 (405)
T PRK10125 256 KTDQQLVREMMALGDKIELHTFGKFSP-F-T-AGNVVNHGFETDKRKLMSAL--NQMDALVFSSRVDNYPLILCEALSIG 330 (405)
T ss_pred ccHHHHHHHHHhCCCCeEEEEEcCCCc-c-c-ccceEEecCcCCHHHHHHHH--HhCCEEEECCccccCcCHHHHHHHcC
Confidence 44577888888775532 444454322 2 3 567777777643 2 344 6678888643 347899999999
Q ss_pred cceEeeccccCcHHHHHHHHHcCcEEEeccCCCCHHHHHHHHH
Q psy14941 379 IPVLGIPVFGDQWANIKKLESLKAGKLLPYLEITEETVSDALK 421 (513)
Q Consensus 379 vP~i~~P~~~DQ~~na~~~~~~G~G~~l~~~~~~~~~l~~ai~ 421 (513)
+|+|+....+ .... ...+.|..++.. +.++|.++++
T Consensus 331 ~PVVat~~gG----~~Ei-v~~~~G~lv~~~--d~~~La~~~~ 366 (405)
T PRK10125 331 VPVIATHSDA----AREV-LQKSGGKTVSEE--EVLQLAQLSK 366 (405)
T ss_pred CCEEEeCCCC----hHHh-EeCCcEEEECCC--CHHHHHhccC
Confidence 9999997765 2222 334579998854 6777876543
No 97
>PLN02846 digalactosyldiacylglycerol synthase
Probab=98.31 E-value=3.1e-05 Score=78.40 Aligned_cols=117 Identities=15% Similarity=0.114 Sum_probs=72.0
Q ss_pred EEEEeCcccccCCCCHHHHHHHHHHHhcC----CC-eEEEEEcCC-CCC---C---CCCC-CcEEEecCCCccccccCCC
Q psy14941 292 IYFSMGSMLKTSSFPPDKFKAFLKAFSKI----PQ-RVLWKFEDN-DTS---I---FKPY-KNIRTSSWMPQRDIFAHPN 358 (513)
Q Consensus 292 v~vs~Gs~~~~~~~~~~~~~~~~~~~~~~----~~-~~i~~~~~~-~~~---~---~~~~-~nv~~~~~~pq~~lL~h~~ 358 (513)
+++..|-.. .++-+..+++++..+ +. ++++ +|+. +.. . .+ . +...+.++.+..+++ ..
T Consensus 230 ~~l~vGRL~-----~eK~~~~Li~a~~~l~~~~~~~~l~i-vGdGp~~~~L~~~a~~l-~l~~~vf~G~~~~~~~~--~~ 300 (462)
T PLN02846 230 GAYYIGKMV-----WSKGYKELLKLLHKHQKELSGLEVDL-YGSGEDSDEVKAAAEKL-ELDVRVYPGRDHADPLF--HD 300 (462)
T ss_pred EEEEEecCc-----ccCCHHHHHHHHHHHHhhCCCeEEEE-ECCCccHHHHHHHHHhc-CCcEEEECCCCCHHHHH--Hh
Confidence 445567665 456666777776643 33 3444 3432 211 1 01 1 122355555555677 67
Q ss_pred ceEEeccCC----cccHHHHHHcCcceEeeccccCcHHHHHHHHHcCcEEEeccCCCCHHHHHHHHHHhc-CH
Q psy14941 359 MKLFISHGG----LLGITEAVYEGIPVLGIPVFGDQWANIKKLESLKAGKLLPYLEITEETVSDALKIVL-SP 426 (513)
Q Consensus 359 ~~~~IthgG----~~s~~Eal~~GvP~i~~P~~~DQ~~na~~~~~~G~G~~l~~~~~~~~~l~~ai~~ll-~~ 426 (513)
+|+|+.-+- .+++.||+++|+|+|+.-..+ | ..+.+.+-|...+ +.+++.+++.+++ ++
T Consensus 301 ~DvFv~pS~~Et~g~v~lEAmA~G~PVVa~~~~~----~-~~v~~~~ng~~~~----~~~~~a~ai~~~l~~~ 364 (462)
T PLN02846 301 YKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS----N-EFFKQFPNCRTYD----DGKGFVRATLKALAEE 364 (462)
T ss_pred CCEEEECCCcccchHHHHHHHHcCCcEEEecCCC----c-ceeecCCceEecC----CHHHHHHHHHHHHccC
Confidence 799987743 478999999999999985433 2 3444455565554 6889999999999 53
No 98
>KOG3349|consensus
Probab=98.29 E-value=4.2e-06 Score=68.54 Aligned_cols=118 Identities=15% Similarity=0.115 Sum_probs=81.8
Q ss_pred CceEEEEeCcccccCCCCHHHHHHHHHHHhcCCC-eEEEEEcCCCC--CC----C-CCCCc--EEEecCCCc-cccccCC
Q psy14941 289 NGVIYFSMGSMLKTSSFPPDKFKAFLKAFSKIPQ-RVLWKFEDNDT--SI----F-KPYKN--IRTSSWMPQ-RDIFAHP 357 (513)
Q Consensus 289 ~~~v~vs~Gs~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~--~~----~-~~~~n--v~~~~~~pq-~~lL~h~ 357 (513)
...+||+.||....+-.+.-..+.+.+.+.+.+. +.|..+++... ++ . . ... +.-.+|-|- .+.. .
T Consensus 3 ~~~vFVTVGtT~Fd~LI~~Vl~~~~~~~L~k~G~~kLiiQ~Grg~~~~~d~~~~~~k-~~gl~id~y~f~psl~e~I--~ 79 (170)
T KOG3349|consen 3 LMTVFVTVGTTSFDDLISCVLSEEFLQELQKRGFTKLIIQIGRGQPFFGDPIDLIRK-NGGLTIDGYDFSPSLTEDI--R 79 (170)
T ss_pred ceEEEEEeccccHHHHHHHHcCHHHHHHHHHcCccEEEEEecCCccCCCCHHHhhcc-cCCeEEEEEecCccHHHHH--h
Confidence 4679999999862211111223456677777887 88888887531 11 0 0 122 334456675 3445 5
Q ss_pred CceEEeccCCcccHHHHHHcCcceEeecc----ccCcHHHHHHHHHcCcEEEeccC
Q psy14941 358 NMKLFISHGGLLGITEAVYEGIPVLGIPV----FGDQWANIKKLESLKAGKLLPYL 409 (513)
Q Consensus 358 ~~~~~IthgG~~s~~Eal~~GvP~i~~P~----~~DQ~~na~~~~~~G~G~~l~~~ 409 (513)
.++++|+|+|.||++|.+..|+|.|+++- -..|-.-|..+++.|.=..-...
T Consensus 80 ~AdlVIsHAGaGS~letL~l~KPlivVvNd~LMDNHQ~ELA~qL~~egyL~~C~ps 135 (170)
T KOG3349|consen 80 SADLVISHAGAGSCLETLRLGKPLIVVVNDSLMDNHQLELAKQLAEEGYLYYCTPS 135 (170)
T ss_pred hccEEEecCCcchHHHHHHcCCCEEEEeChHhhhhHHHHHHHHHHhcCcEEEeecc
Confidence 58999999999999999999999999984 35789999999998887666543
No 99
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=98.28 E-value=3.7e-06 Score=82.82 Aligned_cols=179 Identities=16% Similarity=0.261 Sum_probs=99.4
Q ss_pred CceEEeCcccccC----CCCCcHHH--HHHhhcCCCceEEEEeCcccccC-CCCHHHHHHHHHHHhcC-CCeEEEEEcCC
Q psy14941 260 ANVVEIGGIHVKP----AKKLNEEM--ERFLNESHNGVIYFSMGSMLKTS-SFPPDKFKAFLKAFSKI-PQRVLWKFEDN 331 (513)
Q Consensus 260 p~~~~vG~l~~~~----~~~l~~~l--~~~l~~~~~~~v~vs~Gs~~~~~-~~~~~~~~~~~~~~~~~-~~~~i~~~~~~ 331 (513)
.++..+|....+. .+...+++ ..++....++.+++++=...+.. ......+..+++++.+. +.++||.+.+.
T Consensus 145 ~rI~~vG~~~~D~l~~~~~~~~~~~~~~~i~~~~~~~~iLvt~H~~t~~~~~~~~~~i~~~l~~L~~~~~~~vi~~~hn~ 224 (346)
T PF02350_consen 145 ERIFVVGNPGIDALLQNKEEIEEKYKNSGILQDAPKPYILVTLHPVTNEDNPERLEQILEALKALAERQNVPVIFPLHNN 224 (346)
T ss_dssp GGEEE---HHHHHHHHHHHTTCC-HHHHHHHHCTTSEEEEEE-S-CCCCTHH--HHHHHHHHHHHHHHTTEEEEEE--S-
T ss_pred CeEEEEChHHHHHHHHhHHHHhhhhhhHHHHhccCCCEEEEEeCcchhcCChHHHHHHHHHHHHHHhcCCCcEEEEecCC
Confidence 4677778765543 11222222 23433347899999984443211 11234555566666665 45899998842
Q ss_pred C---------CCCCCCCCcEEEecCCCcc---ccccCCCceEEeccCCcccHH-HHHHcCcceEeeccccCcHHHHHHHH
Q psy14941 332 D---------TSIFKPYKNIRTSSWMPQR---DIFAHPNMKLFISHGGLLGIT-EAVYEGIPVLGIPVFGDQWANIKKLE 398 (513)
Q Consensus 332 ~---------~~~~~~~~nv~~~~~~pq~---~lL~h~~~~~~IthgG~~s~~-Eal~~GvP~i~~P~~~DQ~~na~~~~ 398 (513)
+ +.. -+|+++.+-+++. .+| .+++++||..| ++. ||.+.|+|+|.+=..++.+. ..
T Consensus 225 p~~~~~i~~~l~~---~~~v~~~~~l~~~~~l~ll--~~a~~vvgdSs--GI~eEa~~lg~P~v~iR~~geRqe----~r 293 (346)
T PF02350_consen 225 PRGSDIIIEKLKK---YDNVRLIEPLGYEEYLSLL--KNADLVVGDSS--GIQEEAPSLGKPVVNIRDSGERQE----GR 293 (346)
T ss_dssp HHHHHHHHHHHTT----TTEEEE----HHHHHHHH--HHESEEEESSH--HHHHHGGGGT--EEECSSS-S-HH----HH
T ss_pred chHHHHHHHHhcc---cCCEEEECCCCHHHHHHHH--hcceEEEEcCc--cHHHHHHHhCCeEEEecCCCCCHH----HH
Confidence 2 222 2599999888765 566 67899999999 666 99999999999944444333 34
Q ss_pred HcCcEEEeccCCCCHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCCCChHHHHHHHH
Q psy14941 399 SLKAGKLLPYLEITEETVSDALKIVL-SPEYKENAEDLGTRFRDRPQSPLEVAIYWI 454 (513)
Q Consensus 399 ~~G~G~~l~~~~~~~~~l~~ai~~ll-~~~y~~~a~~~~~~~~~~~~~~~~~a~~~i 454 (513)
..|.++.+. .+.++|.+++++++ +..+.++++....-+.+. +..++.++.+
T Consensus 294 ~~~~nvlv~---~~~~~I~~ai~~~l~~~~~~~~~~~~~npYgdG--~as~rI~~~L 345 (346)
T PF02350_consen 294 ERGSNVLVG---TDPEAIIQAIEKALSDKDFYRKLKNRPNPYGDG--NASERIVEIL 345 (346)
T ss_dssp HTTSEEEET---SSHHHHHHHHHHHHH-HHHHHHHHCS--TT-SS---HHHHHHHHH
T ss_pred hhcceEEeC---CCHHHHHHHHHHHHhChHHHHhhccCCCCCCCC--cHHHHHHHhh
Confidence 567777754 58999999999999 866666665544445444 5566655544
No 100
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=98.27 E-value=0.00018 Score=74.85 Aligned_cols=153 Identities=12% Similarity=0.016 Sum_probs=86.7
Q ss_pred CCceEEEEeCcccccCCCCHHHHHHHHHHHhcC---CCeEEEEEcCCC-----CC---CCCCCCcEEEecCCCcc---cc
Q psy14941 288 HNGVIYFSMGSMLKTSSFPPDKFKAFLKAFSKI---PQRVLWKFEDND-----TS---IFKPYKNIRTSSWMPQR---DI 353 (513)
Q Consensus 288 ~~~~v~vs~Gs~~~~~~~~~~~~~~~~~~~~~~---~~~~i~~~~~~~-----~~---~~~~~~nv~~~~~~pq~---~l 353 (513)
++..+++..|... +.+-...+++++.++ +.++++.-.++. +. ... ++|+.+....++. .+
T Consensus 294 ~~~~~i~~vGrl~-----~~Kg~~~li~a~~~l~~~~~~lvi~G~g~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~ 367 (476)
T cd03791 294 PDAPLFGFVGRLT-----EQKGIDLLLEALPELLELGGQLVILGSGDPEYEEALRELAARY-PGRVAVLIGYDEALAHLI 367 (476)
T ss_pred CCCCEEEEEeecc-----ccccHHHHHHHHHHHHHcCcEEEEEecCCHHHHHHHHHHHHhC-CCcEEEEEeCCHHHHHHH
Confidence 3556777778776 344455555655543 346655543321 10 112 4677765544543 34
Q ss_pred ccCCCceEEecc----CCcccHHHHHHcCcceEeecccc--CcHHHHHHHHHcCcEEEeccCCCCHHHHHHHHHHhc-CH
Q psy14941 354 FAHPNMKLFISH----GGLLGITEAVYEGIPVLGIPVFG--DQWANIKKLESLKAGKLLPYLEITEETVSDALKIVL-SP 426 (513)
Q Consensus 354 L~h~~~~~~Ith----gG~~s~~Eal~~GvP~i~~P~~~--DQ~~na~~~~~~G~G~~l~~~~~~~~~l~~ai~~ll-~~ 426 (513)
+ ..+++++.- |-..+.+||+++|+|+|+....+ |--.+.......|.|..++. -+.+++.++|.+++ +.
T Consensus 368 ~--~~aDv~l~pS~~E~~gl~~lEAma~G~pvI~~~~gg~~e~v~~~~~~~~~~~G~~~~~--~~~~~l~~~i~~~l~~~ 443 (476)
T cd03791 368 Y--AGADFFLMPSRFEPCGLTQMYAMRYGTVPIVRATGGLADTVIDYNEDTGEGTGFVFEG--YNADALLAALRRALALY 443 (476)
T ss_pred H--HhCCEEECCCCCCCCcHHHHHHhhCCCCCEECcCCCccceEeCCcCCCCCCCeEEeCC--CCHHHHHHHHHHHHHHH
Confidence 5 678888854 22257899999999999875533 21111111113458998874 46899999999987 32
Q ss_pred HHHHHHHHHHHHHhcCCCChHHHH
Q psy14941 427 EYKENAEDLGTRFRDRPQSPLEVA 450 (513)
Q Consensus 427 ~y~~~a~~~~~~~~~~~~~~~~~a 450 (513)
.-++..+++++......++-...+
T Consensus 444 ~~~~~~~~~~~~~~~~~fsw~~~a 467 (476)
T cd03791 444 RDPEAWRKLQRNAMAQDFSWDRSA 467 (476)
T ss_pred cCHHHHHHHHHHHhccCCChHHHH
Confidence 223444445544444434433333
No 101
>PLN02949 transferase, transferring glycosyl groups
Probab=98.26 E-value=0.00096 Score=68.51 Aligned_cols=88 Identities=16% Similarity=0.115 Sum_probs=57.7
Q ss_pred CCcEEEecCCCccc---cccCCCceEEec---cCCc-ccHHHHHHcCcceEeecccc---CcHHHHHHHHHcC-cEEEec
Q psy14941 339 YKNIRTSSWMPQRD---IFAHPNMKLFIS---HGGL-LGITEAVYEGIPVLGIPVFG---DQWANIKKLESLK-AGKLLP 407 (513)
Q Consensus 339 ~~nv~~~~~~pq~~---lL~h~~~~~~It---hgG~-~s~~Eal~~GvP~i~~P~~~---DQ~~na~~~~~~G-~G~~l~ 407 (513)
.++|.+.+++|+.+ +| .++++++. +-|. .++.||+++|+|+|+....+ |.-.+. ..| .|...+
T Consensus 334 ~~~V~f~g~v~~~el~~ll--~~a~~~v~~s~~E~FGivvlEAMA~G~PVIa~~~gGp~~eIV~~~----~~g~tG~l~~ 407 (463)
T PLN02949 334 DGDVEFHKNVSYRDLVRLL--GGAVAGLHSMIDEHFGISVVEYMAAGAVPIAHNSAGPKMDIVLDE----DGQQTGFLAT 407 (463)
T ss_pred CCcEEEeCCCCHHHHHHHH--HhCcEEEeCCccCCCChHHHHHHHcCCcEEEeCCCCCcceeeecC----CCCcccccCC
Confidence 67899999998764 56 56777773 2232 47999999999999986543 111100 012 354442
Q ss_pred cCCCCHHHHHHHHHHhc-C-HHHHHHHHHHH
Q psy14941 408 YLEITEETVSDALKIVL-S-PEYKENAEDLG 436 (513)
Q Consensus 408 ~~~~~~~~l~~ai~~ll-~-~~y~~~a~~~~ 436 (513)
+.+++.++|.+++ + ++.++.+.+-+
T Consensus 408 ----~~~~la~ai~~ll~~~~~~r~~m~~~a 434 (463)
T PLN02949 408 ----TVEEYADAILEVLRMRETERLEIAAAA 434 (463)
T ss_pred ----CHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 7899999999999 5 55444444433
No 102
>PLN00142 sucrose synthase
Probab=98.26 E-value=0.001 Score=71.51 Aligned_cols=138 Identities=13% Similarity=0.139 Sum_probs=82.8
Q ss_pred CceEEEEeCcccccCCCCHHHHHHHHHHHhcCC-----CeEEEEEcC-CC-----CC-------------C-CCCCCcEE
Q psy14941 289 NGVIYFSMGSMLKTSSFPPDKFKAFLKAFSKIP-----QRVLWKFED-ND-----TS-------------I-FKPYKNIR 343 (513)
Q Consensus 289 ~~~v~vs~Gs~~~~~~~~~~~~~~~~~~~~~~~-----~~~i~~~~~-~~-----~~-------------~-~~~~~nv~ 343 (513)
+..++++.|... +.+-...+++++.+.+ .++++.-++ +. .+ + .+ .++|.
T Consensus 572 ~kpvIl~VGRL~-----~~KGid~LIeA~a~l~~l~~~~~LVIVGgg~d~~~s~d~ee~~el~~L~~La~~lgL-~~~V~ 645 (815)
T PLN00142 572 KKPIIFSMARLD-----RVKNLTGLVEWYGKNKRLRELVNLVVVGGFIDPSKSKDREEIAEIKKMHSLIEKYNL-KGQFR 645 (815)
T ss_pred CCcEEEEEecCc-----ccCCHHHHHHHHHHHHHhCCCcEEEEEECCccccccccHHHHHHHHHHHHHHHHcCC-CCcEE
Confidence 445677888775 4555666777776442 255544333 10 00 0 13 46677
Q ss_pred EecCC----CccccccC--CCceEEecc---CCc-ccHHHHHHcCcceEeeccccCcHHHHHHHHHcCcEEEeccCCCCH
Q psy14941 344 TSSWM----PQRDIFAH--PNMKLFISH---GGL-LGITEAVYEGIPVLGIPVFGDQWANIKKLESLKAGKLLPYLEITE 413 (513)
Q Consensus 344 ~~~~~----pq~~lL~h--~~~~~~Ith---gG~-~s~~Eal~~GvP~i~~P~~~DQ~~na~~~~~~G~G~~l~~~~~~~ 413 (513)
+.+.. +..++... ..+++|+.- -|. .++.||+++|+|+|+....+ ....+++-..|..++.. +.
T Consensus 646 flG~~~~~~~~~eLyr~iadaaDVfVlPS~~EgFGLvvLEAMA~GlPVVATdvGG----~~EIV~dG~tG~LV~P~--D~ 719 (815)
T PLN00142 646 WIAAQTNRVRNGELYRYIADTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCQGG----PAEIIVDGVSGFHIDPY--HG 719 (815)
T ss_pred EcCCcCCcccHHHHHHHHHhhCCEEEeCCcccCCCHHHHHHHHcCCCEEEcCCCC----HHHHhcCCCcEEEeCCC--CH
Confidence 66543 22344410 134677753 333 58999999999999975543 55556666679998854 57
Q ss_pred HHHHHHHH----Hhc-CHHHHHHHHHHHHH
Q psy14941 414 ETVSDALK----IVL-SPEYKENAEDLGTR 438 (513)
Q Consensus 414 ~~l~~ai~----~ll-~~~y~~~a~~~~~~ 438 (513)
+++.++|. +++ |+..++++.+-+..
T Consensus 720 eaLA~aI~~lLekLl~Dp~lr~~mg~~Ar~ 749 (815)
T PLN00142 720 DEAANKIADFFEKCKEDPSYWNKISDAGLQ 749 (815)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 77777765 456 88877776665543
No 103
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=98.23 E-value=0.00018 Score=74.62 Aligned_cols=122 Identities=12% Similarity=0.051 Sum_probs=77.5
Q ss_pred CceEEEEeCcccccCCCCHHHHHHHHHHHhcC---CCeEEEEEcCC-CCC-------CCCCCCcEEEecCCCcc---ccc
Q psy14941 289 NGVIYFSMGSMLKTSSFPPDKFKAFLKAFSKI---PQRVLWKFEDN-DTS-------IFKPYKNIRTSSWMPQR---DIF 354 (513)
Q Consensus 289 ~~~v~vs~Gs~~~~~~~~~~~~~~~~~~~~~~---~~~~i~~~~~~-~~~-------~~~~~~nv~~~~~~pq~---~lL 354 (513)
+..+++..|... +.+-...+++++.++ +.++++.-+++ ... ... +.++.+....++. .++
T Consensus 290 ~~~~i~~vGrl~-----~~Kg~~~li~a~~~l~~~~~~lvi~G~g~~~~~~~l~~~~~~~-~~~v~~~~~~~~~~~~~~~ 363 (473)
T TIGR02095 290 DVPLFGVISRLT-----QQKGVDLLLAALPELLELGGQLVVLGTGDPELEEALRELAERY-PGNVRVIIGYDEALAHLIY 363 (473)
T ss_pred CCCEEEEEecCc-----cccChHHHHHHHHHHHHcCcEEEEECCCCHHHHHHHHHHHHHC-CCcEEEEEcCCHHHHHHHH
Confidence 456777778876 344455566666544 34666654332 111 113 5677776666654 355
Q ss_pred cCCCceEEeccC---Cc-ccHHHHHHcCcceEeeccccCcHHHHHHHHHc------CcEEEeccCCCCHHHHHHHHHHhc
Q psy14941 355 AHPNMKLFISHG---GL-LGITEAVYEGIPVLGIPVFGDQWANIKKLESL------KAGKLLPYLEITEETVSDALKIVL 424 (513)
Q Consensus 355 ~h~~~~~~Ithg---G~-~s~~Eal~~GvP~i~~P~~~DQ~~na~~~~~~------G~G~~l~~~~~~~~~l~~ai~~ll 424 (513)
..+|+++.-. |. .+.+||+++|+|+|+....+ ....+.+. +.|..++ .-+.+++.++|.+++
T Consensus 364 --~~aDv~l~pS~~E~~gl~~lEAma~G~pvI~s~~gg----~~e~v~~~~~~~~~~~G~l~~--~~d~~~la~~i~~~l 435 (473)
T TIGR02095 364 --AGADFILMPSRFEPCGLTQLYAMRYGTVPIVRRTGG----LADTVVDGDPEAESGTGFLFE--EYDPGALLAALSRAL 435 (473)
T ss_pred --HhCCEEEeCCCcCCcHHHHHHHHHCCCCeEEccCCC----ccceEecCCCCCCCCceEEeC--CCCHHHHHHHHHHHH
Confidence 7788888542 32 47899999999999875533 22233333 7888887 347889999999886
No 104
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.19 E-value=0.00079 Score=72.01 Aligned_cols=135 Identities=16% Similarity=0.106 Sum_probs=85.2
Q ss_pred CceEEEEeCcccccCCCCHHHHHHHHHHHh----cCCC-eEEEEEcCCC---C------CCCCCCCcEEEecCCCcc-cc
Q psy14941 289 NGVIYFSMGSMLKTSSFPPDKFKAFLKAFS----KIPQ-RVLWKFEDND---T------SIFKPYKNIRTSSWMPQR-DI 353 (513)
Q Consensus 289 ~~~v~vs~Gs~~~~~~~~~~~~~~~~~~~~----~~~~-~~i~~~~~~~---~------~~~~~~~nv~~~~~~pq~-~l 353 (513)
+..++...|... +.+-...+++++. +.+. ++++.-++.. + .+ + .++|++.+|.++. .+
T Consensus 516 ~~~vIg~VGRL~-----~~KG~~~LI~A~a~l~~~~p~~~LvIvG~G~~~~~L~~l~~~lg-L-~~~V~flG~~~dv~~l 588 (694)
T PRK15179 516 ARFTVGTVMRVD-----DNKRPFLWVEAAQRFAASHPKVRFIMVGGGPLLESVREFAQRLG-M-GERILFTGLSRRVGYW 588 (694)
T ss_pred CCeEEEEEEeCC-----ccCCHHHHHHHHHHHHHHCcCeEEEEEccCcchHHHHHHHHHcC-C-CCcEEEcCCcchHHHH
Confidence 345666677764 3333444455543 4454 5444433221 1 12 4 6889999998754 56
Q ss_pred ccCCCceEEec---cCC-cccHHHHHHcCcceEeeccccCcHHHHHHHHHcCcEEEeccCCCCHHHHHHHHHHhc-----
Q psy14941 354 FAHPNMKLFIS---HGG-LLGITEAVYEGIPVLGIPVFGDQWANIKKLESLKAGKLLPYLEITEETVSDALKIVL----- 424 (513)
Q Consensus 354 L~h~~~~~~It---hgG-~~s~~Eal~~GvP~i~~P~~~DQ~~na~~~~~~G~G~~l~~~~~~~~~l~~ai~~ll----- 424 (513)
+ ..+++|+. +.| .+++.||+++|+|+|+.... .+...+++...|+.++..+.+.+++.+++.+++
T Consensus 589 l--~aaDv~VlpS~~Egfp~vlLEAMA~G~PVVat~~g----G~~EiV~dg~~GlLv~~~d~~~~~La~aL~~ll~~l~~ 662 (694)
T PRK15179 589 L--TQFNAFLLLSRFEGLPNVLIEAQFSGVPVVTTLAG----GAGEAVQEGVTGLTLPADTVTAPDVAEALARIHDMCAA 662 (694)
T ss_pred H--HhcCEEEeccccccchHHHHHHHHcCCeEEEECCC----ChHHHccCCCCEEEeCCCCCChHHHHHHHHHHHhChhc
Confidence 6 67788875 445 37899999999999998653 355556666679999877766666666665554
Q ss_pred CHHHHHHHHHHH
Q psy14941 425 SPEYKENAEDLG 436 (513)
Q Consensus 425 ~~~y~~~a~~~~ 436 (513)
++..++++++..
T Consensus 663 ~~~l~~~ar~~a 674 (694)
T PRK15179 663 DPGIARKAADWA 674 (694)
T ss_pred cHHHHHHHHHHH
Confidence 566666665544
No 105
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=98.18 E-value=1.7e-05 Score=69.96 Aligned_cols=135 Identities=23% Similarity=0.332 Sum_probs=96.3
Q ss_pred CCceEEEEeCcccccCCCCHHHHHHHHHHHhcC-----CCeEEEEEcCCC----------CCCCCCCCcEEEecCCCcc-
Q psy14941 288 HNGVIYFSMGSMLKTSSFPPDKFKAFLKAFSKI-----PQRVLWKFEDND----------TSIFKPYKNIRTSSWMPQR- 351 (513)
Q Consensus 288 ~~~~v~vs~Gs~~~~~~~~~~~~~~~~~~~~~~-----~~~~i~~~~~~~----------~~~~~~~~nv~~~~~~pq~- 351 (513)
.++.+++..|... +.+....+++++..+ +.-.++.++... ..+ . .+++.+.++.++.
T Consensus 13 ~~~~~il~~g~~~-----~~K~~~~li~a~~~l~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~-~-~~~i~~~~~~~~~~ 85 (172)
T PF00534_consen 13 DKKKIILFIGRLD-----PEKGIDLLIEAFKKLKEKKNPNYKLVIVGDGEYKKELKNLIEKLN-L-KENIIFLGYVPDDE 85 (172)
T ss_dssp TTSEEEEEESESS-----GGGTHHHHHHHHHHHHHHHHTTEEEEEESHCCHHHHHHHHHHHTT-C-GTTEEEEESHSHHH
T ss_pred CCCeEEEEEecCc-----cccCHHHHHHHHHHHHhhcCCCeEEEEEccccccccccccccccc-c-cccccccccccccc
Confidence 6788888888876 445566666666643 333444445211 112 4 6899999999833
Q ss_pred --ccccCCCceEEecc----CCcccHHHHHHcCcceEeeccccCcHHHHHHHHHcCcEEEeccCCCCHHHHHHHHHHhc-
Q psy14941 352 --DIFAHPNMKLFISH----GGLLGITEAVYEGIPVLGIPVFGDQWANIKKLESLKAGKLLPYLEITEETVSDALKIVL- 424 (513)
Q Consensus 352 --~lL~h~~~~~~Ith----gG~~s~~Eal~~GvP~i~~P~~~DQ~~na~~~~~~G~G~~l~~~~~~~~~l~~ai~~ll- 424 (513)
+++ ..++++++. |+.+++.||+++|+|+|+. |...+...+.+.+.|..++.. +.+++.++|.+++
T Consensus 86 l~~~~--~~~di~v~~s~~e~~~~~~~Ea~~~g~pvI~~----~~~~~~e~~~~~~~g~~~~~~--~~~~l~~~i~~~l~ 157 (172)
T PF00534_consen 86 LDELY--KSSDIFVSPSRNEGFGLSLLEAMACGCPVIAS----DIGGNNEIINDGVNGFLFDPN--DIEELADAIEKLLN 157 (172)
T ss_dssp HHHHH--HHTSEEEE-BSSBSS-HHHHHHHHTT-EEEEE----SSTHHHHHSGTTTSEEEESTT--SHHHHHHHHHHHHH
T ss_pred ccccc--ccceeccccccccccccccccccccccceeec----cccCCceeeccccceEEeCCC--CHHHHHHHHHHHHC
Confidence 566 568888877 5567999999999999986 556677777777889999844 8999999999999
Q ss_pred CHHHHHHHHHHHH
Q psy14941 425 SPEYKENAEDLGT 437 (513)
Q Consensus 425 ~~~y~~~a~~~~~ 437 (513)
|+++++++.+-++
T Consensus 158 ~~~~~~~l~~~~~ 170 (172)
T PF00534_consen 158 DPELRQKLGKNAR 170 (172)
T ss_dssp HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhc
Confidence 8877777766554
No 106
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=98.17 E-value=0.00031 Score=69.95 Aligned_cols=131 Identities=16% Similarity=0.250 Sum_probs=84.0
Q ss_pred CceEEEEeCcccccCCCCHHHHHHHHHHHhcCCCeEEEEEcCCCC---------CCCCC-CCcEEEecCCCcc---cccc
Q psy14941 289 NGVIYFSMGSMLKTSSFPPDKFKAFLKAFSKIPQRVLWKFEDNDT---------SIFKP-YKNIRTSSWMPQR---DIFA 355 (513)
Q Consensus 289 ~~~v~vs~Gs~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---------~~~~~-~~nv~~~~~~pq~---~lL~ 355 (513)
++.+++.+=........+.+.+..+++++.+...++++.+..... .++.. .+|+.+.+-++.. .++
T Consensus 201 ~~~vlvt~Hp~~~~~~~~~~~l~~li~~L~~~~~~~~vi~P~~~p~~~~i~~~i~~~~~~~~~v~l~~~l~~~~~l~Ll- 279 (365)
T TIGR03568 201 KPYALVTFHPVTLEKESAEEQIKELLKALDELNKNYIFTYPNADAGSRIINEAIEEYVNEHPNFRLFKSLGQERYLSLL- 279 (365)
T ss_pred CCEEEEEeCCCcccccCchHHHHHHHHHHHHhccCCEEEEeCCCCCchHHHHHHHHHhcCCCCEEEECCCChHHHHHHH-
Confidence 478778775433112345678999999998876555555433211 11010 3689988877655 556
Q ss_pred CCCceEEeccCCcccHHHHHHcCcceEeeccccCcHHHHHHHHHcCcEEE-eccCCCCHHHHHHHHHHhcCHHHHHHH
Q psy14941 356 HPNMKLFISHGGLLGITEAVYEGIPVLGIPVFGDQWANIKKLESLKAGKL-LPYLEITEETVSDALKIVLSPEYKENA 432 (513)
Q Consensus 356 h~~~~~~IthgG~~s~~Eal~~GvP~i~~P~~~DQ~~na~~~~~~G~G~~-l~~~~~~~~~l~~ai~~ll~~~y~~~a 432 (513)
.+++++||.++.+- .||.+.|+|+|.+- +.+ ...+.|..+. + ..++++|.+++.++++++++++.
T Consensus 280 -~~a~~vitdSSggi-~EA~~lg~Pvv~l~---~R~----e~~~~g~nvl~v---g~~~~~I~~a~~~~~~~~~~~~~ 345 (365)
T TIGR03568 280 -KNADAVIGNSSSGI-IEAPSFGVPTINIG---TRQ----KGRLRADSVIDV---DPDKEEIVKAIEKLLDPAFKKSL 345 (365)
T ss_pred -HhCCEEEEcChhHH-HhhhhcCCCEEeec---CCc----hhhhhcCeEEEe---CCCHHHHHHHHHHHhChHHHHHH
Confidence 78899999885444 99999999999773 211 1223454443 4 34789999999995566554443
No 107
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=98.14 E-value=1.5e-05 Score=77.90 Aligned_cols=157 Identities=12% Similarity=0.058 Sum_probs=100.9
Q ss_pred CceEEEEeCcccccCCCCHHHHHHHHHHHhcCCC---eEEEEEcCCC--CCCCC-CCCcEEEecCCCccccccCCCceEE
Q psy14941 289 NGVIYFSMGSMLKTSSFPPDKFKAFLKAFSKIPQ---RVLWKFEDND--TSIFK-PYKNIRTSSWMPQRDIFAHPNMKLF 362 (513)
Q Consensus 289 ~~~v~vs~Gs~~~~~~~~~~~~~~~~~~~~~~~~---~~i~~~~~~~--~~~~~-~~~nv~~~~~~pq~~lL~h~~~~~~ 362 (513)
+++|.+--||... .-...+-.++++..++.. .+++....+. ..+.. +...+.+.+ .-.+++ ..+|+.
T Consensus 167 ~~~I~llPGSR~~---Ei~~llP~~~~aa~~L~~~~~~~~i~~a~~~~~i~~~~~~~~~~~~~~--~~~~~m--~~aDla 239 (347)
T PRK14089 167 EGTIAFMPGSRKS---EIKRLMPIFKELAKKLEGKEKILVVPSFFKGKDLKEIYGDISEFEISY--DTHKAL--LEAEFA 239 (347)
T ss_pred CCEEEEECCCCHH---HHHHHHHHHHHHHHHHhhcCcEEEEeCCCcHHHHHHHHhcCCCcEEec--cHHHHH--HhhhHH
Confidence 4788888888752 222444545566655543 3343322211 11100 012233332 234677 778999
Q ss_pred eccCCcccHHHHHHcCcceEee-ccccCcHHHHHHHH---HcCcEEEe-------------ccCCCCHHHHHHHHHHhcC
Q psy14941 363 ISHGGLLGITEAVYEGIPVLGI-PVFGDQWANIKKLE---SLKAGKLL-------------PYLEITEETVSDALKIVLS 425 (513)
Q Consensus 363 IthgG~~s~~Eal~~GvP~i~~-P~~~DQ~~na~~~~---~~G~G~~l-------------~~~~~~~~~l~~ai~~ll~ 425 (513)
|+-.|..|+ |++..|+|||+. ....-|..||+++. ..|++-.+ ..++.|++.|.+++.+.-.
T Consensus 240 l~~SGT~TL-E~al~g~P~Vv~Yk~~~lty~iak~lv~~~~igL~Nii~~~~~~~~vvPEllQ~~~t~~~la~~i~~~~~ 318 (347)
T PRK14089 240 FICSGTATL-EAALIGTPFVLAYKAKAIDYFIAKMFVKLKHIGLANIFFDFLGKEPLHPELLQEFVTVENLLKAYKEMDR 318 (347)
T ss_pred HhcCcHHHH-HHHHhCCCEEEEEeCCHHHHHHHHHHHcCCeeehHHHhcCCCcccccCchhhcccCCHHHHHHHHHHHHH
Confidence 999998888 999999999983 34567899999998 55655444 2357899999999988225
Q ss_pred HHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q psy14941 426 PEYKENAEDLGTRFRDRPQSPLEVAIYWIEY 456 (513)
Q Consensus 426 ~~y~~~a~~~~~~~~~~~~~~~~~a~~~ie~ 456 (513)
...++...++.+.+. . ++.++++++|..
T Consensus 319 ~~~~~~~~~l~~~l~-~--~a~~~~A~~i~~ 346 (347)
T PRK14089 319 EKFFKKSKELREYLK-H--GSAKNVAKILKE 346 (347)
T ss_pred HHHHHHHHHHHHHhc-C--CHHHHHHHHHhc
Confidence 677777788877773 2 678888777653
No 108
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=98.13 E-value=0.00077 Score=69.59 Aligned_cols=193 Identities=15% Similarity=0.074 Sum_probs=103.5
Q ss_pred cEEEEeccCccCCCccCCCceEEeCcccccC-C-CCCcHHHHHHhhcC-CCceEEEEeCcccccCCCCHHHHHHHHHHHh
Q psy14941 242 SLTLVNTHHTINIARPLPANVVEIGGIHVKP-A-KKLNEEMERFLNES-HNGVIYFSMGSMLKTSSFPPDKFKAFLKAFS 318 (513)
Q Consensus 242 ~l~l~~s~~~l~~~~p~~p~~~~vG~l~~~~-~-~~l~~~l~~~l~~~-~~~~v~vs~Gs~~~~~~~~~~~~~~~~~~~~ 318 (513)
|.+++--+++-++-+...-++.|||--..+. + .+..++..+-+.-. ++++|-+--||-. +.=...+-.++++.+
T Consensus 363 D~ll~IfPFE~~~y~~~gv~v~yVGHPL~d~i~~~~~~~~~r~~lgl~~~~~iIaLLPGSR~---~EI~rllPv~l~aa~ 439 (608)
T PRK01021 363 DLLLLILPFEQNLFKDSPLRTVYLGHPLVETISSFSPNLSWKEQLHLPSDKPIVAAFPGSRR---GDILRNLTIQVQAFL 439 (608)
T ss_pred hhheecCccCHHHHHhcCCCeEEECCcHHhhcccCCCHHHHHHHcCCCCCCCEEEEECCCCH---HHHHHHHHHHHHHHH
Confidence 3344433344444444566788888544333 1 22233444443322 5688989999975 222355566777766
Q ss_pred --cC--CCeEEEEEcCCCC----CCCCC--C-CcEEEecCCCccccccCCCceEEeccCCcccHHHHHHcCcceEee-cc
Q psy14941 319 --KI--PQRVLWKFEDNDT----SIFKP--Y-KNIRTSSWMPQRDIFAHPNMKLFISHGGLLGITEAVYEGIPVLGI-PV 386 (513)
Q Consensus 319 --~~--~~~~i~~~~~~~~----~~~~~--~-~nv~~~~~~pq~~lL~h~~~~~~IthgG~~s~~Eal~~GvP~i~~-P~ 386 (513)
.+ +.++++...+... .+..+ + .++.+..--...+++ ..||+.+.-.| ..++|++..|+||+++ -.
T Consensus 440 ~~~l~~~l~fvvp~a~~~~~~~i~~~~~~~~~~~~~ii~~~~~~~~m--~aaD~aLaaSG-TaTLEaAL~g~PmVV~YK~ 516 (608)
T PRK01021 440 ASSLASTHQLLVSSANPKYDHLILEVLQQEGCLHSHIVPSQFRYELM--RECDCALAKCG-TIVLETALNQTPTIVTCQL 516 (608)
T ss_pred HHHhccCeEEEEecCchhhHHHHHHHHhhcCCCCeEEecCcchHHHH--HhcCeeeecCC-HHHHHHHHhCCCEEEEEec
Confidence 44 2366664333211 11010 1 122322210124677 77888888888 6789999999999995 22
Q ss_pred ccCcHHHHHHHHH------------cCcEEEec----cCCCCHHHHHHHHHHhc-CHHHHHH----HHHHHHHHhc
Q psy14941 387 FGDQWANIKKLES------------LKAGKLLP----YLEITEETVSDALKIVL-SPEYKEN----AEDLGTRFRD 441 (513)
Q Consensus 387 ~~DQ~~na~~~~~------------~G~G~~l~----~~~~~~~~l~~ai~~ll-~~~y~~~----a~~~~~~~~~ 441 (513)
..=-..-++++.+ .|-.+.-+ .++.|+++|.+++ +++ |+.++++ .+++.+.+.+
T Consensus 517 s~Lty~Iak~Lvki~i~yIsLpNIIagr~VvPEllqgQ~~~tpe~La~~l-~lL~d~~~r~~~~~~l~~lr~~Lg~ 591 (608)
T PRK01021 517 RPFDTFLAKYIFKIILPAYSLPNIILGSTIFPEFIGGKKDFQPEEVAAAL-DILKTSQSKEKQKDACRDLYQAMNE 591 (608)
T ss_pred CHHHHHHHHHHHhccCCeeehhHHhcCCCcchhhcCCcccCCHHHHHHHH-HHhcCHHHHHHHHHHHHHHHHHhcC
Confidence 1112233445444 12222211 2478999999997 777 7654444 4445555543
No 109
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=98.09 E-value=0.00077 Score=66.48 Aligned_cols=189 Identities=16% Similarity=0.113 Sum_probs=105.7
Q ss_pred ccEEEEeccCccCCCccCCCceEEeCcccccC-C-CCCcHHHHHHh-hcCCCceEEEEeCcccccCCCCHHHHHHHHHHH
Q psy14941 241 CSLTLVNTHHTINIARPLPANVVEIGGIHVKP-A-KKLNEEMERFL-NESHNGVIYFSMGSMLKTSSFPPDKFKAFLKAF 317 (513)
Q Consensus 241 ~~l~l~~s~~~l~~~~p~~p~~~~vG~l~~~~-~-~~l~~~l~~~l-~~~~~~~v~vs~Gs~~~~~~~~~~~~~~~~~~~ 317 (513)
.|.+++--+++-++-....-++.|||--..+. . ...+.+..+.+ + .++++|-+--||--. .=...+-.++++.
T Consensus 134 ~D~ll~ifPFE~~~y~~~g~~~~~VGHPl~d~~~~~~~~~~~~~~~l~-~~~~iIaLLPGSR~~---EI~rllP~~l~aa 209 (373)
T PF02684_consen 134 VDHLLVIFPFEPEFYKKHGVPVTYVGHPLLDEVKPEPDRAEAREKLLD-PDKPIIALLPGSRKS---EIKRLLPIFLEAA 209 (373)
T ss_pred HhheeECCcccHHHHhccCCCeEEECCcchhhhccCCCHHHHHHhcCC-CCCcEEEEeCCCCHH---HHHHHHHHHHHHH
Confidence 34455444455455455556789999544443 1 12233444443 4 368899999999751 1223344455554
Q ss_pred hc----CCC-eEEEEEcCCCC--------CCCCCCCcEEEecC-CCccccccCCCceEEeccCCcccHHHHHHcCcceEe
Q psy14941 318 SK----IPQ-RVLWKFEDNDT--------SIFKPYKNIRTSSW-MPQRDIFAHPNMKLFISHGGLLGITEAVYEGIPVLG 383 (513)
Q Consensus 318 ~~----~~~-~~i~~~~~~~~--------~~~~~~~nv~~~~~-~pq~~lL~h~~~~~~IthgG~~s~~Eal~~GvP~i~ 383 (513)
+. .|. ++++...+... .. . ..++.+... -.-.+++ ..+++.+.-.| ..++|+...|+||++
T Consensus 210 ~~l~~~~p~l~fvvp~a~~~~~~~i~~~~~~-~-~~~~~~~~~~~~~~~~m--~~ad~al~~SG-TaTLE~Al~g~P~Vv 284 (373)
T PF02684_consen 210 KLLKKQRPDLQFVVPVAPEVHEELIEEILAE-Y-PPDVSIVIIEGESYDAM--AAADAALAASG-TATLEAALLGVPMVV 284 (373)
T ss_pred HHHHHhCCCeEEEEecCCHHHHHHHHHHHHh-h-CCCCeEEEcCCchHHHH--HhCcchhhcCC-HHHHHHHHhCCCEEE
Confidence 43 344 67766544221 11 1 222332222 2334667 66788888777 778999999999998
Q ss_pred e-ccccCcHHHHHHHHHcCc-EE---Eec--------cCCCCHHHHHHHHHHhc-CHHHHHHHHHHHHH
Q psy14941 384 I-PVFGDQWANIKKLESLKA-GK---LLP--------YLEITEETVSDALKIVL-SPEYKENAEDLGTR 438 (513)
Q Consensus 384 ~-P~~~DQ~~na~~~~~~G~-G~---~l~--------~~~~~~~~l~~ai~~ll-~~~y~~~a~~~~~~ 438 (513)
+ -...=-..-|+++.+... |+ .++ .++.|++.|.+++.+++ |+..++......+.
T Consensus 285 ~Yk~~~lt~~iak~lvk~~~isL~Niia~~~v~PEliQ~~~~~~~i~~~~~~ll~~~~~~~~~~~~~~~ 353 (373)
T PF02684_consen 285 AYKVSPLTYFIAKRLVKVKYISLPNIIAGREVVPELIQEDATPENIAAELLELLENPEKRKKQKELFRE 353 (373)
T ss_pred EEcCcHHHHHHHHHhhcCCEeechhhhcCCCcchhhhcccCCHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 6 222223445555544322 11 111 25789999999999999 87655444443333
No 110
>PLN02501 digalactosyldiacylglycerol synthase
Probab=98.07 E-value=0.00011 Score=76.56 Aligned_cols=111 Identities=14% Similarity=0.087 Sum_probs=68.5
Q ss_pred CHHHHHHHHHHHhcC----CC-eEEEEEcCCCC-CC------CCCCCcEEEecCCCcc-ccccCCCceEEeccCC----c
Q psy14941 306 PPDKFKAFLKAFSKI----PQ-RVLWKFEDNDT-SI------FKPYKNIRTSSWMPQR-DIFAHPNMKLFISHGG----L 368 (513)
Q Consensus 306 ~~~~~~~~~~~~~~~----~~-~~i~~~~~~~~-~~------~~~~~nv~~~~~~pq~-~lL~h~~~~~~IthgG----~ 368 (513)
+.+-+..+++++..+ +. ++++ +|+... .+ .. .-++.+.++.++. +++ ..+|+||.-+- .
T Consensus 557 ~EKGld~LLeAla~L~~~~pnvrLvI-VGDGP~reeLe~la~eL-gL~V~FLG~~dd~~~ly--asaDVFVlPS~sEgFG 632 (794)
T PLN02501 557 WAKGYRELIDLLAKHKNELDGFNLDV-FGNGEDAHEVQRAAKRL-DLNLNFLKGRDHADDSL--HGYKVFINPSISDVLC 632 (794)
T ss_pred ccCCHHHHHHHHHHHHhhCCCeEEEE-EcCCccHHHHHHHHHHc-CCEEEecCCCCCHHHHH--HhCCEEEECCCcccch
Confidence 556667777776543 23 3333 343221 11 02 2247777777655 477 77888886432 3
Q ss_pred ccHHHHHHcCcceEeeccccCcHHHHHHHHHcCcEEEeccCCCCHHHHHHHHHHhc-CHHHH
Q psy14941 369 LGITEAVYEGIPVLGIPVFGDQWANIKKLESLKAGKLLPYLEITEETVSDALKIVL-SPEYK 429 (513)
Q Consensus 369 ~s~~Eal~~GvP~i~~P~~~DQ~~na~~~~~~G~G~~l~~~~~~~~~l~~ai~~ll-~~~y~ 429 (513)
+++.||+++|+|+|+....+... +...+.|... -+.+++.++|.+++ |+.-+
T Consensus 633 lVlLEAMA~GlPVVATd~pG~e~-----V~~g~nGll~----~D~EafAeAI~~LLsd~~~r 685 (794)
T PLN02501 633 TATAEALAMGKFVVCADHPSNEF-----FRSFPNCLTY----KTSEDFVAKVKEALANEPQP 685 (794)
T ss_pred HHHHHHHHcCCCEEEecCCCCce-----EeecCCeEec----CCHHHHHHHHHHHHhCchhh
Confidence 68999999999999986654321 2222333332 26899999999999 76543
No 111
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=98.02 E-value=6.5e-05 Score=76.25 Aligned_cols=142 Identities=15% Similarity=0.276 Sum_probs=92.7
Q ss_pred CCceEEEEeCcccccCCCCHHHHHHHHHHHhcC----CC-eEEEEE-cCCCC----C----C-CCCCCcEEEecCCCccc
Q psy14941 288 HNGVIYFSMGSMLKTSSFPPDKFKAFLKAFSKI----PQ-RVLWKF-EDNDT----S----I-FKPYKNIRTSSWMPQRD 352 (513)
Q Consensus 288 ~~~~v~vs~Gs~~~~~~~~~~~~~~~~~~~~~~----~~-~~i~~~-~~~~~----~----~-~~~~~nv~~~~~~pq~~ 352 (513)
+++..+++.|... +.+....+++++.++ +. ++.|.+ ++... . + .. .++|.+.+|+++.+
T Consensus 228 ~~~~~il~~Grl~-----~~Kg~~~li~a~~~l~~~~p~~~l~~~iiG~g~~~~~l~~~~~~~~~-~~~V~f~G~v~~~e 301 (407)
T cd04946 228 DDTLRIVSCSYLV-----PVKRVDLIIKALAALAKARPSIKIKWTHIGGGPLEDTLKELAESKPE-NISVNFTGELSNSE 301 (407)
T ss_pred CCCEEEEEeeccc-----cccCHHHHHHHHHHHHHhCCCceEEEEEEeCchHHHHHHHHHHhcCC-CceEEEecCCChHH
Confidence 4566777788876 334445555555543 22 555543 32211 0 1 12 56899999999875
Q ss_pred ---cccCCCceEEeccCC----cccHHHHHHcCcceEeeccccCcHHHHHHHHHcCcEEEeccCCCCHHHHHHHHHHhc-
Q psy14941 353 ---IFAHPNMKLFISHGG----LLGITEAVYEGIPVLGIPVFGDQWANIKKLESLKAGKLLPYLEITEETVSDALKIVL- 424 (513)
Q Consensus 353 ---lL~h~~~~~~IthgG----~~s~~Eal~~GvP~i~~P~~~DQ~~na~~~~~~G~G~~l~~~~~~~~~l~~ai~~ll- 424 (513)
++....+++|+...- .++++||+++|+|+|+....+ ....+.+.+.|..++. .-+.+++.++|.+++
T Consensus 302 ~~~~~~~~~~~v~v~~S~~Eg~p~~llEAma~G~PVIas~vgg----~~e~i~~~~~G~l~~~-~~~~~~la~~I~~ll~ 376 (407)
T cd04946 302 VYKLYKENPVDVFVNLSESEGLPVSIMEAMSFGIPVIATNVGG----TPEIVDNGGNGLLLSK-DPTPNELVSSLSKFID 376 (407)
T ss_pred HHHHHhhcCCCEEEeCCccccccHHHHHHHHcCCCEEeCCCCC----cHHHhcCCCcEEEeCC-CCCHHHHHHHHHHHHh
Confidence 444445778875543 468999999999999975433 5556665558988763 347899999999999
Q ss_pred CHHHHHHHHHHHHHHh
Q psy14941 425 SPEYKENAEDLGTRFR 440 (513)
Q Consensus 425 ~~~y~~~a~~~~~~~~ 440 (513)
|++.++++.+-+...-
T Consensus 377 ~~~~~~~m~~~ar~~~ 392 (407)
T cd04946 377 NEEEYQTMREKAREKW 392 (407)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 8877766665554443
No 112
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=97.80 E-value=0.0015 Score=67.69 Aligned_cols=136 Identities=22% Similarity=0.390 Sum_probs=87.1
Q ss_pred CCceEEEEeCcccccCCCCHHHHHHHHHHHhc----CCCeEEEEEcCC-CC-------------CCCCCCCcEEEecCCC
Q psy14941 288 HNGVIYFSMGSMLKTSSFPPDKFKAFLKAFSK----IPQRVLWKFEDN-DT-------------SIFKPYKNIRTSSWMP 349 (513)
Q Consensus 288 ~~~~v~vs~Gs~~~~~~~~~~~~~~~~~~~~~----~~~~~i~~~~~~-~~-------------~~~~~~~nv~~~~~~p 349 (513)
+++.+++..|... +.+-.+.++++++. .+.--++.+++. +- .+ + .+||.+.+...
T Consensus 291 ~~~~~i~~vGrl~-----~~Kg~~~li~a~~~l~~~~p~~~l~IvG~g~~~~~~~~e~~~li~~l~-l-~~~V~f~G~~~ 363 (475)
T cd03813 291 KEPPVVGLIGRVV-----PIKDIKTFIRAAAIVRKKIPDAEGWVIGPTDEDPEYAEECRELVESLG-L-EDNVKFTGFQN 363 (475)
T ss_pred CCCcEEEEEeccc-----cccCHHHHHHHHHHHHHhCCCeEEEEECCCCcChHHHHHHHHHHHHhC-C-CCeEEEcCCcc
Confidence 3456777778876 33444555555543 344223344432 11 11 3 57899988544
Q ss_pred ccccccCCCceEEecc----CCcccHHHHHHcCcceEeeccccCcHHHHHHHHHc------CcEEEeccCCCCHHHHHHH
Q psy14941 350 QRDIFAHPNMKLFISH----GGLLGITEAVYEGIPVLGIPVFGDQWANIKKLESL------KAGKLLPYLEITEETVSDA 419 (513)
Q Consensus 350 q~~lL~h~~~~~~Ith----gG~~s~~Eal~~GvP~i~~P~~~DQ~~na~~~~~~------G~G~~l~~~~~~~~~l~~a 419 (513)
-.+++ ..+++++.. |-.+++.||+++|+|+|+... ......+++. ..|..++. -+.+++.++
T Consensus 364 v~~~l--~~aDv~vlpS~~Eg~p~~vlEAma~G~PVVatd~----g~~~elv~~~~~~~~g~~G~lv~~--~d~~~la~a 435 (475)
T cd03813 364 VKEYL--PKLDVLVLTSISEGQPLVILEAMAAGIPVVATDV----GSCRELIEGADDEALGPAGEVVPP--ADPEALARA 435 (475)
T ss_pred HHHHH--HhCCEEEeCchhhcCChHHHHHHHcCCCEEECCC----CChHHHhcCCcccccCCceEEECC--CCHHHHHHH
Confidence 45777 678888754 334789999999999999643 3344445542 37888873 478999999
Q ss_pred HHHhc-CHHHHHHHHHHHHH
Q psy14941 420 LKIVL-SPEYKENAEDLGTR 438 (513)
Q Consensus 420 i~~ll-~~~y~~~a~~~~~~ 438 (513)
|.+++ |++.++++.+-+..
T Consensus 436 i~~ll~~~~~~~~~~~~a~~ 455 (475)
T cd03813 436 ILRLLKDPELRRAMGEAGRK 455 (475)
T ss_pred HHHHhcCHHHHHHHHHHHHH
Confidence 99999 98776666555543
No 113
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=97.75 E-value=0.00034 Score=70.35 Aligned_cols=165 Identities=16% Similarity=0.229 Sum_probs=98.7
Q ss_pred CCceEEEEeCcccccCCCCHHHHHHHHHHHhcCCCeEEEEEcCCCC-----------CCCCCCCcEEEecCCCccccc-c
Q psy14941 288 HNGVIYFSMGSMLKTSSFPPDKFKAFLKAFSKIPQRVLWKFEDNDT-----------SIFKPYKNIRTSSWMPQRDIF-A 355 (513)
Q Consensus 288 ~~~~v~vs~Gs~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-----------~~~~~~~nv~~~~~~pq~~lL-~ 355 (513)
++.++|.+|.... +..++.++.-.+-+++.|...+|....... .+.. ++++.+.++.|+.+.| .
T Consensus 283 ~d~vvF~~fn~~~---KI~p~~l~~W~~IL~~vP~S~L~L~~~~~~~~~~l~~~~~~~Gv~-~~Ri~f~~~~~~~ehl~~ 358 (468)
T PF13844_consen 283 EDAVVFGSFNNLF---KISPETLDLWARILKAVPNSRLWLLRFPASGEARLRRRFAAHGVD-PDRIIFSPVAPREEHLRR 358 (468)
T ss_dssp SSSEEEEE-S-GG---G--HHHHHHHHHHHHHSTTEEEEEEETSTTHHHHHHHHHHHTTS--GGGEEEEE---HHHHHHH
T ss_pred CCceEEEecCccc---cCCHHHHHHHHHHHHhCCCcEEEEeeCCHHHHHHHHHHHHHcCCC-hhhEEEcCCCCHHHHHHH
Confidence 5678888888887 789999999999999999988887654321 1223 7889999998876555 2
Q ss_pred CCCceEEe---ccCCcccHHHHHHcCcceEeecc-ccCcHHHHHHHHHcCcEEEeccCCCCHHHHHHHHHHhc-CHHHHH
Q psy14941 356 HPNMKLFI---SHGGLLGITEAVYEGIPVLGIPV-FGDQWANIKKLESLKAGKLLPYLEITEETVSDALKIVL-SPEYKE 430 (513)
Q Consensus 356 h~~~~~~I---thgG~~s~~Eal~~GvP~i~~P~-~~DQ~~na~~~~~~G~G~~l~~~~~~~~~l~~ai~~ll-~~~y~~ 430 (513)
+..+|+++ ..+|.+|++||++.|||+|.+|- ..-...-+..+...|+...+-. |.++-.+.--++- |+++++
T Consensus 359 ~~~~DI~LDT~p~nG~TTt~dALwmGVPvVTl~G~~~~sR~~aSiL~~lGl~ElIA~---s~~eYv~~Av~La~D~~~l~ 435 (468)
T PF13844_consen 359 YQLADICLDTFPYNGGTTTLDALWMGVPVVTLPGETMASRVGASILRALGLPELIAD---SEEEYVEIAVRLATDPERLR 435 (468)
T ss_dssp GGG-SEEE--SSS--SHHHHHHHHHT--EEB---SSGGGSHHHHHHHHHT-GGGB-S---SHHHHHHHHHHHHH-HHHHH
T ss_pred hhhCCEEeeCCCCCCcHHHHHHHHcCCCEEeccCCCchhHHHHHHHHHcCCchhcCC---CHHHHHHHHHHHhCCHHHHH
Confidence 35677776 35688999999999999999985 2334555667777888765542 5666555555666 877666
Q ss_pred HHHH-HHHHHhcCCCChHHHHHHHHHHHHH
Q psy14941 431 NAED-LGTRFRDRPQSPLEVAIYWIEYVIK 459 (513)
Q Consensus 431 ~a~~-~~~~~~~~~~~~~~~a~~~ie~~~~ 459 (513)
+.++ +.+...+.|.--....+.-+|.+++
T Consensus 436 ~lR~~Lr~~~~~SpLfd~~~~ar~lE~a~~ 465 (468)
T PF13844_consen 436 ALRAKLRDRRSKSPLFDPKRFARNLEAAYR 465 (468)
T ss_dssp HHHHHHHHHHHHSGGG-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHHHHH
Confidence 5553 4444444443345555666666654
No 114
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=97.74 E-value=0.0036 Score=60.75 Aligned_cols=164 Identities=15% Similarity=0.137 Sum_probs=105.9
Q ss_pred hhcCCCceEEEEeCcccccCCCCHHHHHHHHHHHhcCCC-eEEEEEcCCC-CCC----CC-CCCcEEEec---CCCcccc
Q psy14941 284 LNESHNGVIYFSMGSMLKTSSFPPDKFKAFLKAFSKIPQ-RVLWKFEDND-TSI----FK-PYKNIRTSS---WMPQRDI 353 (513)
Q Consensus 284 l~~~~~~~v~vs~Gs~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~-~~~----~~-~~~nv~~~~---~~pq~~l 353 (513)
+...++..+++++=-.-+....-.+..+.+.+..++.+. .++....... ..+ .+ +.+|+++.+ +.+..-+
T Consensus 199 ~~~~~~~~iLvT~HRreN~~~~~~~i~~al~~i~~~~~~~~viyp~H~~~~v~e~~~~~L~~~~~v~li~pl~~~~f~~L 278 (383)
T COG0381 199 LDDKDKKYILVTAHRRENVGEPLEEICEALREIAEEYPDVIVIYPVHPRPRVRELVLKRLKNVERVKLIDPLGYLDFHNL 278 (383)
T ss_pred hccccCcEEEEEcchhhcccccHHHHHHHHHHHHHhCCCceEEEeCCCChhhhHHHHHHhCCCCcEEEeCCcchHHHHHH
Confidence 333356789988655443221112333333344444422 5555443321 100 01 045677766 3455567
Q ss_pred ccCCCceEEeccCCcccHHHHHHcCcceEeeccccCcHHHHHHHHHcCcEEEeccCCCCHHHHHHHHHHhc-CHHHHHHH
Q psy14941 354 FAHPNMKLFISHGGLLGITEAVYEGIPVLGIPVFGDQWANIKKLESLKAGKLLPYLEITEETVSDALKIVL-SPEYKENA 432 (513)
Q Consensus 354 L~h~~~~~~IthgG~~s~~Eal~~GvP~i~~P~~~DQ~~na~~~~~~G~G~~l~~~~~~~~~l~~ai~~ll-~~~y~~~a 432 (513)
+ .++.+++|-.| |-.-||-..|+|++++-..-+++. ..+.|.-+.+. .+++.+.+++.+++ ++++.+++
T Consensus 279 ~--~~a~~iltDSG-giqEEAp~lg~Pvl~lR~~TERPE----~v~agt~~lvg---~~~~~i~~~~~~ll~~~~~~~~m 348 (383)
T COG0381 279 M--KNAFLILTDSG-GIQEEAPSLGKPVLVLRDTTERPE----GVEAGTNILVG---TDEENILDAATELLEDEEFYERM 348 (383)
T ss_pred H--HhceEEEecCC-chhhhHHhcCCcEEeeccCCCCcc----ceecCceEEeC---ccHHHHHHHHHHHhhChHHHHHH
Confidence 7 67799999988 678999999999999988888887 34566666664 46799999999999 99999998
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHH
Q psy14941 433 EDLGTRFRDRPQSPLEVAIYWIEYVIK 459 (513)
Q Consensus 433 ~~~~~~~~~~~~~~~~~a~~~ie~~~~ 459 (513)
.....-..+. .+.++.++.+..-..
T Consensus 349 ~~~~npYgdg--~as~rIv~~l~~~~~ 373 (383)
T COG0381 349 SNAKNPYGDG--NASERIVEILLNYFD 373 (383)
T ss_pred hcccCCCcCc--chHHHHHHHHHHHhh
Confidence 8887777665 456666665554433
No 115
>COG5017 Uncharacterized conserved protein [Function unknown]
Probab=97.72 E-value=0.00081 Score=54.35 Aligned_cols=109 Identities=17% Similarity=0.233 Sum_probs=71.0
Q ss_pred EEEEeCcccccCCCCHHHHH-HHHHHHhcCCCeEEEEEcCCCCCCCCCCCcEEEecC--CCcc-ccccCCCceEEeccCC
Q psy14941 292 IYFSMGSMLKTSSFPPDKFK-AFLKAFSKIPQRVLWKFEDNDTSIFKPYKNIRTSSW--MPQR-DIFAHPNMKLFISHGG 367 (513)
Q Consensus 292 v~vs~Gs~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~nv~~~~~--~pq~-~lL~h~~~~~~IthgG 367 (513)
++|+.||.... +..-.++ ++.+-.+....++|+.+++.+... . ....+.+| -+-. .+. ..++++|+|+|
T Consensus 2 ifVTvGstf~~--f~rlv~k~e~~el~~~i~e~lIvQyGn~d~kp-v--agl~v~~F~~~~kiQsli--~darIVISHaG 74 (161)
T COG5017 2 IFVTVGSTFYP--FNRLVLKIEVLELTELIQEELIVQYGNGDIKP-V--AGLRVYGFDKEEKIQSLI--HDARIVISHAG 74 (161)
T ss_pred eEEEecCccch--HHHHHhhHHHHHHHHHhhhheeeeecCCCccc-c--cccEEEeechHHHHHHHh--hcceEEEeccC
Confidence 78999998631 1111111 122222222348999999865433 2 22344444 3332 444 45789999999
Q ss_pred cccHHHHHHcCcceEeecccc--------CcHHHHHHHHHcCcEEEec
Q psy14941 368 LLGITEAVYEGIPVLGIPVFG--------DQWANIKKLESLKAGKLLP 407 (513)
Q Consensus 368 ~~s~~Eal~~GvP~i~~P~~~--------DQ~~na~~~~~~G~G~~l~ 407 (513)
.||++.++..++|.|++|--. .|-.-|..+.+.+.=....
T Consensus 75 ~GSIL~~~rl~kplIv~pr~s~y~elvDdHQvela~klae~~~vv~~s 122 (161)
T COG5017 75 EGSILLLLRLDKPLIVVPRSSQYQELVDDHQVELALKLAEINYVVACS 122 (161)
T ss_pred cchHHHHhhcCCcEEEEECchhHHHhhhhHHHHHHHHHHhcCceEEEc
Confidence 999999999999999999643 4777788888888776665
No 116
>PLN02316 synthase/transferase
Probab=97.72 E-value=0.032 Score=61.87 Aligned_cols=140 Identities=11% Similarity=-0.025 Sum_probs=80.2
Q ss_pred ceEEEEeCcccccCCCCHHHHHHHHHHHhcC---CCeEEEEEcCCCC------C---C----CCCCCcEEEecCCCcc--
Q psy14941 290 GVIYFSMGSMLKTSSFPPDKFKAFLKAFSKI---PQRVLWKFEDNDT------S---I----FKPYKNIRTSSWMPQR-- 351 (513)
Q Consensus 290 ~~v~vs~Gs~~~~~~~~~~~~~~~~~~~~~~---~~~~i~~~~~~~~------~---~----~~~~~nv~~~~~~pq~-- 351 (513)
..++...|... +.+-...+++|+.++ +.++++.-++.+. . . .. +++|.+....+..
T Consensus 840 ~plVg~VGRL~-----~qKGvdlLi~Al~~ll~~~~qlVIvG~Gpd~~~e~~l~~La~~Lg~~~-~~rV~f~g~~de~la 913 (1036)
T PLN02316 840 LPLVGIITRLT-----HQKGIHLIKHAIWRTLERNGQVVLLGSAPDPRIQNDFVNLANQLHSSH-HDRARLCLTYDEPLS 913 (1036)
T ss_pred CeEEEEEeccc-----cccCHHHHHHHHHHHhhcCcEEEEEeCCCCHHHHHHHHHHHHHhCccC-CCeEEEEecCCHHHH
Confidence 45555667665 344455555555543 4466554332110 0 0 02 4567776555543
Q ss_pred -ccccCCCceEEeccC----CcccHHHHHHcCcceEeecccc--CcHHH-------HHHHHHcCcEEEeccCCCCHHHHH
Q psy14941 352 -DIFAHPNMKLFISHG----GLLGITEAVYEGIPVLGIPVFG--DQWAN-------IKKLESLKAGKLLPYLEITEETVS 417 (513)
Q Consensus 352 -~lL~h~~~~~~Ithg----G~~s~~Eal~~GvP~i~~P~~~--DQ~~n-------a~~~~~~G~G~~l~~~~~~~~~l~ 417 (513)
.++ ..+|+|+.-. =..+.+||+++|.|.|+....| |.-.. ++..-..+.|...+ ..+++.|.
T Consensus 914 h~iy--aaADiflmPS~~EP~GLvqLEAMa~GtppVvs~vGGL~DtV~d~d~~~~~~~~~g~~~tGflf~--~~d~~aLa 989 (1036)
T PLN02316 914 HLIY--AGADFILVPSIFEPCGLTQLTAMRYGSIPVVRKTGGLFDTVFDVDHDKERAQAQGLEPNGFSFD--GADAAGVD 989 (1036)
T ss_pred HHHH--HhCcEEEeCCcccCccHHHHHHHHcCCCeEEEcCCCcHhhccccccccccccccccCCceEEeC--CCCHHHHH
Confidence 456 8889998543 2378999999999999865433 21111 11000125788887 45788999
Q ss_pred HHHHHhc-C-HHHHHHHHHHHHHH
Q psy14941 418 DALKIVL-S-PEYKENAEDLGTRF 439 (513)
Q Consensus 418 ~ai~~ll-~-~~y~~~a~~~~~~~ 439 (513)
.+|.+++ + ...++...++++..
T Consensus 990 ~AL~raL~~~~~~~~~~~~~~r~~ 1013 (1036)
T PLN02316 990 YALNRAISAWYDGRDWFNSLCKRV 1013 (1036)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHH
Confidence 9999998 5 34444444444443
No 117
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=97.70 E-value=0.0016 Score=59.60 Aligned_cols=48 Identities=19% Similarity=0.202 Sum_probs=37.2
Q ss_pred CCcEEEecCCCcc----ccccCCCceEEeccCC----cccHHHHHHcCcceEeecccc
Q psy14941 339 YKNIRTSSWMPQR----DIFAHPNMKLFISHGG----LLGITEAVYEGIPVLGIPVFG 388 (513)
Q Consensus 339 ~~nv~~~~~~pq~----~lL~h~~~~~~IthgG----~~s~~Eal~~GvP~i~~P~~~ 388 (513)
.+|+.+.++++.. .++ ..++++++... .+++.||+++|+|+|+.+..+
T Consensus 160 ~~~v~~~~~~~~~~~~~~~~--~~~di~l~~~~~e~~~~~~~Eam~~g~pvi~s~~~~ 215 (229)
T cd01635 160 LDRVIFLGGLDPEELLALLL--AAADVFVLPSLREGFGLVVLEAMACGLPVIATDVGG 215 (229)
T ss_pred cccEEEeCCCCcHHHHHHHh--hcCCEEEecccccCcChHHHHHHhCCCCEEEcCCCC
Confidence 6788888887332 233 35899998886 689999999999999987654
No 118
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=97.59 E-value=0.00044 Score=69.27 Aligned_cols=135 Identities=17% Similarity=0.246 Sum_probs=84.9
Q ss_pred CceEEEEeCcccccCCCCHHHHHHHHHHHhc----CCC-eEEEEEcCCC---------CCCCCCCCcEEEecCCCcc-cc
Q psy14941 289 NGVIYFSMGSMLKTSSFPPDKFKAFLKAFSK----IPQ-RVLWKFEDND---------TSIFKPYKNIRTSSWMPQR-DI 353 (513)
Q Consensus 289 ~~~v~vs~Gs~~~~~~~~~~~~~~~~~~~~~----~~~-~~i~~~~~~~---------~~~~~~~~nv~~~~~~pq~-~l 353 (513)
++..++..|... +.+....+++++.+ .+. ++++.-.+.. ..+ + +++|.+.++.++. .+
T Consensus 203 ~~~~i~~vgrl~-----~~K~~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~~~~~~~~~~-~-~~~v~~~g~~~~~~~~ 275 (372)
T cd04949 203 KPHKIITVARLA-----PEKQLDQLIKAFAKVVKQVPDATLDIYGYGDEEEKLKELIEELG-L-EDYVFLKGYTRDLDEV 275 (372)
T ss_pred CCCeEEEEEccC-----cccCHHHHHHHHHHHHHhCCCcEEEEEEeCchHHHHHHHHHHcC-C-cceEEEcCCCCCHHHH
Confidence 344556677764 33444444444443 343 5555433321 112 4 6788888876654 56
Q ss_pred ccCCCceEEecc----CCcccHHHHHHcCcceEeeccccCcHHHHHHHHHcCcEEEeccCCCCHHHHHHHHHHhc-CHHH
Q psy14941 354 FAHPNMKLFISH----GGLLGITEAVYEGIPVLGIPVFGDQWANIKKLESLKAGKLLPYLEITEETVSDALKIVL-SPEY 428 (513)
Q Consensus 354 L~h~~~~~~Ith----gG~~s~~Eal~~GvP~i~~P~~~DQ~~na~~~~~~G~G~~l~~~~~~~~~l~~ai~~ll-~~~y 428 (513)
+ .+++++|.- |...++.||+++|+|+|+..... .+...++....|..++. -+.+++.++|.+++ |++.
T Consensus 276 ~--~~ad~~v~~S~~Eg~~~~~lEAma~G~PvI~~~~~~---g~~~~v~~~~~G~lv~~--~d~~~la~~i~~ll~~~~~ 348 (372)
T cd04949 276 Y--QKAQLSLLTSQSEGFGLSLMEALSHGLPVISYDVNY---GPSEIIEDGENGYLVPK--GDIEALAEAIIELLNDPKL 348 (372)
T ss_pred H--hhhhEEEecccccccChHHHHHHhCCCCEEEecCCC---CcHHHcccCCCceEeCC--CcHHHHHHHHHHHHcCHHH
Confidence 6 556666643 33468999999999999975431 23455666678888873 47899999999999 8765
Q ss_pred HHHHHHHHH
Q psy14941 429 KENAEDLGT 437 (513)
Q Consensus 429 ~~~a~~~~~ 437 (513)
.+.+.+-+.
T Consensus 349 ~~~~~~~a~ 357 (372)
T cd04949 349 LQKFSEAAY 357 (372)
T ss_pred HHHHHHHHH
Confidence 554444443
No 119
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=97.46 E-value=0.0058 Score=59.19 Aligned_cols=185 Identities=18% Similarity=0.162 Sum_probs=107.8
Q ss_pred ceEEeCcccccCC--CCCcHHHHHHhhcC-CCceEEEEeCcccccCCCCHHHHHHHHHHHhc----CCC-eEEEEEcCCC
Q psy14941 261 NVVEIGGIHVKPA--KKLNEEMERFLNES-HNGVIYFSMGSMLKTSSFPPDKFKAFLKAFSK----IPQ-RVLWKFEDND 332 (513)
Q Consensus 261 ~~~~vG~l~~~~~--~~l~~~l~~~l~~~-~~~~v~vs~Gs~~~~~~~~~~~~~~~~~~~~~----~~~-~~i~~~~~~~ 332 (513)
+..|||--..+.. .+..+++.+-+... +++++.+-.||-. +.=...+..+.++.++ .|. +|+....+..
T Consensus 157 ~~~yVGHpl~d~i~~~~~r~~ar~~l~~~~~~~~lalLPGSR~---sEI~rl~~~f~~a~~~l~~~~~~~~~vlp~~~~~ 233 (381)
T COG0763 157 PCTYVGHPLADEIPLLPDREAAREKLGIDADEKTLALLPGSRR---SEIRRLLPPFVQAAQELKARYPDLKFVLPLVNAK 233 (381)
T ss_pred CeEEeCChhhhhccccccHHHHHHHhCCCCCCCeEEEecCCcH---HHHHHHHHHHHHHHHHHHhhCCCceEEEecCcHH
Confidence 3888985433331 23344555555333 7889999999976 2223344445555544 344 7887665532
Q ss_pred CCC----CCC-C---CcEEEecCCCccccccCCCceEEeccCCcccHHHHHHcCcceEee----ccccCcHHHHHHHHHc
Q psy14941 333 TSI----FKP-Y---KNIRTSSWMPQRDIFAHPNMKLFISHGGLLGITEAVYEGIPVLGI----PVFGDQWANIKKLESL 400 (513)
Q Consensus 333 ~~~----~~~-~---~nv~~~~~~pq~~lL~h~~~~~~IthgG~~s~~Eal~~GvP~i~~----P~~~DQ~~na~~~~~~ 400 (513)
... ... . .++.+.+--- .+.+ ..+|+.+.-+| .-++|+.-+|+|||+. |+. ..-+.+....
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~a~--~~aD~al~aSG-T~tLE~aL~g~P~Vv~Yk~~~it---~~iak~lvk~ 306 (381)
T COG0763 234 YRRIIEEALKWEVAGLSLILIDGEK-RKAF--AAADAALAASG-TATLEAALAGTPMVVAYKVKPIT---YFIAKRLVKL 306 (381)
T ss_pred HHHHHHHHhhccccCceEEecCchH-HHHH--HHhhHHHHhcc-HHHHHHHHhCCCEEEEEeccHHH---HHHHHHhccC
Confidence 110 010 1 1222222111 1345 66788888877 5678999999999985 321 1223333322
Q ss_pred Cc--------E--EE--eccCCCCHHHHHHHHHHhc-CH----HHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q psy14941 401 KA--------G--KL--LPYLEITEETVSDALKIVL-SP----EYKENAEDLGTRFRDRPQSPLEVAIYWIEYV 457 (513)
Q Consensus 401 G~--------G--~~--l~~~~~~~~~l~~ai~~ll-~~----~y~~~a~~~~~~~~~~~~~~~~~a~~~ie~~ 457 (513)
.. | +. +-.++.+++.|.+++..++ |. .+++...++.+.++.. .+.+.|+..+-..
T Consensus 307 ~yisLpNIi~~~~ivPEliq~~~~pe~la~~l~~ll~~~~~~~~~~~~~~~l~~~l~~~--~~~e~aA~~vl~~ 378 (381)
T COG0763 307 PYVSLPNILAGREIVPELIQEDCTPENLARALEELLLNGDRREALKEKFRELHQYLRED--PASEIAAQAVLEL 378 (381)
T ss_pred CcccchHHhcCCccchHHHhhhcCHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHcCC--cHHHHHHHHHHHH
Confidence 21 1 11 1115689999999999999 76 6777788888888766 5778887766544
No 120
>PLN02939 transferase, transferring glycosyl groups
Probab=97.32 E-value=0.076 Score=58.11 Aligned_cols=135 Identities=16% Similarity=0.074 Sum_probs=80.4
Q ss_pred ceEEEEeCcccccCCCCHHHHHHHHHHHhcC---CCeEEEEEcCCC------CCC-----CCCCCcEEEecCCCcc---c
Q psy14941 290 GVIYFSMGSMLKTSSFPPDKFKAFLKAFSKI---PQRVLWKFEDND------TSI-----FKPYKNIRTSSWMPQR---D 352 (513)
Q Consensus 290 ~~v~vs~Gs~~~~~~~~~~~~~~~~~~~~~~---~~~~i~~~~~~~------~~~-----~~~~~nv~~~~~~pq~---~ 352 (513)
.+++...|... +.+-+..+++++..+ +.++++.-++.. +.+ .. .++|.+..+++.. .
T Consensus 779 ~pLIg~VGRL~-----~QKGiDlLleA~~~Ll~~dvqLVIvGdGp~~~~e~eL~~La~~l~l-~drV~FlG~~de~lah~ 852 (977)
T PLN02939 779 QPLVGCITRLV-----PQKGVHLIRHAIYKTAELGGQFVLLGSSPVPHIQREFEGIADQFQS-NNNIRLILKYDEALSHS 852 (977)
T ss_pred ceEEEEeecCC-----cccChHHHHHHHHHHhhcCCEEEEEeCCCcHHHHHHHHHHHHHcCC-CCeEEEEeccCHHHHHH
Confidence 45666677765 444455555555432 446665543321 110 02 5689998888865 4
Q ss_pred cccCCCceEEeccC----CcccHHHHHHcCcceEeecccc--CcHHH--HHHH-HHcCcEEEeccCCCCHHHHHHHHHHh
Q psy14941 353 IFAHPNMKLFISHG----GLLGITEAVYEGIPVLGIPVFG--DQWAN--IKKL-ESLKAGKLLPYLEITEETVSDALKIV 423 (513)
Q Consensus 353 lL~h~~~~~~Ithg----G~~s~~Eal~~GvP~i~~P~~~--DQ~~n--a~~~-~~~G~G~~l~~~~~~~~~l~~ai~~l 423 (513)
++ ..+|+|+.-. -..+.+||+++|+|.|+....| |--.+ ...+ +.-+-|...+. -+.+.+.++|.++
T Consensus 853 IY--AaADIFLmPSr~EPfGLvqLEAMAyGtPPVVs~vGGL~DtV~d~d~e~i~~eg~NGfLf~~--~D~eaLa~AL~rA 928 (977)
T PLN02939 853 IY--AASDMFIIPSMFEPCGLTQMIAMRYGSVPIVRKTGGLNDSVFDFDDETIPVELRNGFTFLT--PDEQGLNSALERA 928 (977)
T ss_pred HH--HhCCEEEECCCccCCcHHHHHHHHCCCCEEEecCCCCcceeecCCccccccCCCceEEecC--CCHHHHHHHHHHH
Confidence 66 7889999642 2368999999999999876644 21111 1111 12356877763 4788888888775
Q ss_pred c-----CHHHHHHHHH
Q psy14941 424 L-----SPEYKENAED 434 (513)
Q Consensus 424 l-----~~~y~~~a~~ 434 (513)
+ |+..++++.+
T Consensus 929 L~~~~~dpe~~~~L~~ 944 (977)
T PLN02939 929 FNYYKRKPEVWKQLVQ 944 (977)
T ss_pred HHHhccCHHHHHHHHH
Confidence 4 4555544443
No 121
>PHA01633 putative glycosyl transferase group 1
Probab=97.20 E-value=0.0022 Score=62.46 Aligned_cols=127 Identities=11% Similarity=0.202 Sum_probs=77.2
Q ss_pred CCceEEEEeCcccccCCCCHHHHHHHHHHHhcC----CC---eE-EEEEcCCCCCC-CCCCCcEEEec---CCCcc---c
Q psy14941 288 HNGVIYFSMGSMLKTSSFPPDKFKAFLKAFSKI----PQ---RV-LWKFEDNDTSI-FKPYKNIRTSS---WMPQR---D 352 (513)
Q Consensus 288 ~~~~v~vs~Gs~~~~~~~~~~~~~~~~~~~~~~----~~---~~-i~~~~~~~~~~-~~~~~nv~~~~---~~pq~---~ 352 (513)
++..+++..|... +.+-...++++++++ +. ++ ++..+.....+ .+ +++|.+.+ ++++. +
T Consensus 146 ~~~~~i~~vGRl~-----~~KG~~~LI~A~~~L~~~~p~~~~~i~l~ivG~~~~~~l~l-~~~V~f~g~~G~~~~~dl~~ 219 (335)
T PHA01633 146 PDTIKFGIVSGLT-----KRKNMDLMLQVFNELNTKYPDIAKKIHFFVISHKQFTQLEV-PANVHFVAEFGHNSREYIFA 219 (335)
T ss_pred CCCeEEEEEeCCc-----cccCHHHHHHHHHHHHHhCCCccccEEEEEEcHHHHHHcCC-CCcEEEEecCCCCCHHHHHH
Confidence 3455666667765 344455566666543 21 12 23334322211 15 78899884 45544 4
Q ss_pred cccCCCceEEeccC---C-cccHHHHHHcCcceEeecc------ccCc------HHHHHHHH--HcCcEEEeccCCCCHH
Q psy14941 353 IFAHPNMKLFISHG---G-LLGITEAVYEGIPVLGIPV------FGDQ------WANIKKLE--SLKAGKLLPYLEITEE 414 (513)
Q Consensus 353 lL~h~~~~~~Ithg---G-~~s~~Eal~~GvP~i~~P~------~~DQ------~~na~~~~--~~G~G~~l~~~~~~~~ 414 (513)
++ ..+++|+.-. | .+++.||+++|+|+|+.-. .+|+ .++..... ..|.|..++ ..+++
T Consensus 220 ~y--~~aDifV~PS~~EgfGlvlLEAMA~G~PVVas~~~~l~Ei~g~~~~~Li~~~~v~~~~~~~~g~g~~~~--~~d~~ 295 (335)
T PHA01633 220 FY--GAMDFTIVPSGTEGFGMPVLESMAMGTPVIHQLMPPLDEFTSWQWNLLIKSSKVEEYYDKEHGQKWKIH--KFQIE 295 (335)
T ss_pred HH--HhCCEEEECCccccCCHHHHHHHHcCCCEEEccCCCceeecCCccceeeCCCCHHHhcCcccCceeeec--CCCHH
Confidence 55 6778888642 3 4678999999999999632 2333 22332222 357777776 67899
Q ss_pred HHHHHHHHhc
Q psy14941 415 TVSDALKIVL 424 (513)
Q Consensus 415 ~l~~ai~~ll 424 (513)
++.++|.+++
T Consensus 296 ~la~ai~~~~ 305 (335)
T PHA01633 296 DMANAIILAF 305 (335)
T ss_pred HHHHHHHHHH
Confidence 9999999995
No 122
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=97.10 E-value=0.0071 Score=59.62 Aligned_cols=96 Identities=16% Similarity=0.241 Sum_probs=71.8
Q ss_pred CCcEEEecCCCccccccC-CC-ceEEecc-------CCc------ccHHHHHHcCcceEeeccccCcHHHHHHHHHcCcE
Q psy14941 339 YKNIRTSSWMPQRDIFAH-PN-MKLFISH-------GGL------LGITEAVYEGIPVLGIPVFGDQWANIKKLESLKAG 403 (513)
Q Consensus 339 ~~nv~~~~~~pq~~lL~h-~~-~~~~Ith-------gG~------~s~~Eal~~GvP~i~~P~~~DQ~~na~~~~~~G~G 403 (513)
.+||.+.+|+|+.++..+ .+ ..++... |.. +-+.|++++|+|+|+. ++...+..+++.++|
T Consensus 206 ~~~V~f~G~~~~eel~~~l~~~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~PVI~~----~~~~~~~~V~~~~~G 281 (333)
T PRK09814 206 SANISYKGWFDPEELPNELSKGFGLVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGLPVIVW----SKAAIADFIVENGLG 281 (333)
T ss_pred CCCeEEecCCCHHHHHHHHhcCcCeEEcCCCCCccchhhhhccchHHHHHHHHCCCCEEEC----CCccHHHHHHhCCce
Confidence 789999999999866421 21 1122111 111 1277889999999985 556788999999999
Q ss_pred EEeccCCCCHHHHHHHHHHhc-C--HHHHHHHHHHHHHHhcC
Q psy14941 404 KLLPYLEITEETVSDALKIVL-S--PEYKENAEDLGTRFRDR 442 (513)
Q Consensus 404 ~~l~~~~~~~~~l~~ai~~ll-~--~~y~~~a~~~~~~~~~~ 442 (513)
+.++ +.+++.+++.++. + ..+++|+++++++++..
T Consensus 282 ~~v~----~~~el~~~l~~~~~~~~~~m~~n~~~~~~~~~~g 319 (333)
T PRK09814 282 FVVD----SLEELPEIIDNITEEEYQEMVENVKKISKLLRNG 319 (333)
T ss_pred EEeC----CHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhcc
Confidence 9998 6778999999876 3 46889999999999876
No 123
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=97.03 E-value=0.018 Score=59.82 Aligned_cols=154 Identities=16% Similarity=0.216 Sum_probs=91.6
Q ss_pred CceEEEEeCcccccCCCCHHHHHHHHHHHhc----CCC-eEEEEEcCCC----CC----C-CCCCCcEEEecCCCccccc
Q psy14941 289 NGVIYFSMGSMLKTSSFPPDKFKAFLKAFSK----IPQ-RVLWKFEDND----TS----I-FKPYKNIRTSSWMPQRDIF 354 (513)
Q Consensus 289 ~~~v~vs~Gs~~~~~~~~~~~~~~~~~~~~~----~~~-~~i~~~~~~~----~~----~-~~~~~nv~~~~~~pq~~lL 354 (513)
++.++++.|... +.+....+++|+.+ .|. ++. .+|... +. + .+ .++|.+.++.+..+++
T Consensus 318 ~~~~il~vGrl~-----~~Kg~~~li~A~~~l~~~~p~~~l~-i~G~G~~~~~l~~~i~~~~l-~~~V~f~G~~~~~~~~ 390 (500)
T TIGR02918 318 KPFSIITASRLA-----KEKHIDWLVKAVVKAKKSVPELTFD-IYGEGGEKQKLQKIINENQA-QDYIHLKGHRNLSEVY 390 (500)
T ss_pred CCeEEEEEeccc-----cccCHHHHHHHHHHHHhhCCCeEEE-EEECchhHHHHHHHHHHcCC-CCeEEEcCCCCHHHHH
Confidence 455677778876 44455555555543 343 332 334321 11 1 13 5778999988777888
Q ss_pred cCCCceEEecc---CC-cccHHHHHHcCcceEeeccccCcHHHHHHHHHcCcEEEeccC--CCC----HHHHHHHHHHhc
Q psy14941 355 AHPNMKLFISH---GG-LLGITEAVYEGIPVLGIPVFGDQWANIKKLESLKAGKLLPYL--EIT----EETVSDALKIVL 424 (513)
Q Consensus 355 ~h~~~~~~Ith---gG-~~s~~Eal~~GvP~i~~P~~~DQ~~na~~~~~~G~G~~l~~~--~~~----~~~l~~ai~~ll 424 (513)
..+++++.- -| ..+++||+++|+|+|+....+ .+...+++..-|..++.. .-+ .++++++|.+++
T Consensus 391 --~~adv~v~pS~~Egfgl~~lEAma~G~PVI~~dv~~---G~~eiI~~g~nG~lv~~~~~~~d~~~~~~~la~~I~~ll 465 (500)
T TIGR02918 391 --KDYELYLSASTSEGFGLTLMEAVGSGLGMIGFDVNY---GNPTFIEDNKNGYLIPIDEEEDDEDQIITALAEKIVEYF 465 (500)
T ss_pred --HhCCEEEEcCccccccHHHHHHHHhCCCEEEecCCC---CCHHHccCCCCEEEEeCCccccchhHHHHHHHHHHHHHh
Confidence 667777753 23 468999999999999985431 244555556678887632 122 788999999999
Q ss_pred -CHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q psy14941 425 -SPEYKENAEDLGTRFRDRPQSPLEVAIYWIEY 456 (513)
Q Consensus 425 -~~~y~~~a~~~~~~~~~~~~~~~~~a~~~ie~ 456 (513)
++. ++++.+-+.... +..+....+..|.+.
T Consensus 466 ~~~~-~~~~~~~a~~~a-~~fs~~~v~~~w~~l 496 (500)
T TIGR02918 466 NSND-IDAFHEYSYQIA-EGFLTANIIEKWKKL 496 (500)
T ss_pred ChHH-HHHHHHHHHHHH-HhcCHHHHHHHHHHH
Confidence 543 333333333322 223545555555543
No 124
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=96.98 E-value=0.022 Score=57.18 Aligned_cols=120 Identities=14% Similarity=0.111 Sum_probs=70.2
Q ss_pred CceEEEEeCcccccCCCCHHHHHHHHHHHhcCCC-eEEEEEcCCC---CCC-CCCCCcEEEecCCCcccccc-CCCceEE
Q psy14941 289 NGVIYFSMGSMLKTSSFPPDKFKAFLKAFSKIPQ-RVLWKFEDND---TSI-FKPYKNIRTSSWMPQRDIFA-HPNMKLF 362 (513)
Q Consensus 289 ~~~v~vs~Gs~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~---~~~-~~~~~nv~~~~~~pq~~lL~-h~~~~~~ 362 (513)
++.+++-.|+... ....+.+. +.....+. ++++.-+++. ... .. .+||++.+++|+.++.. ...++++
T Consensus 204 ~~~~i~y~G~l~~--~~d~~ll~---~la~~~p~~~~vliG~~~~~~~~~~~~~-~~nV~~~G~~~~~~l~~~l~~~Dv~ 277 (373)
T cd04950 204 PRPVIGYYGAIAE--WLDLELLE---ALAKARPDWSFVLIGPVDVSIDPSALLR-LPNVHYLGPKPYKELPAYLAGFDVA 277 (373)
T ss_pred CCCEEEEEecccc--ccCHHHHH---HHHHHCCCCEEEEECCCcCccChhHhcc-CCCEEEeCCCCHHHHHHHHHhCCEE
Confidence 4556667788873 22333333 33334444 6655433211 111 01 48999999999765421 1456666
Q ss_pred ec--------cCCc-ccHHHHHHcCcceEeeccccCcHHHHHHHHHcCcEEEeccCCCCHHHHHHHHHHhc
Q psy14941 363 IS--------HGGL-LGITEAVYEGIPVLGIPVFGDQWANIKKLESLKAGKLLPYLEITEETVSDALKIVL 424 (513)
Q Consensus 363 It--------hgG~-~s~~Eal~~GvP~i~~P~~~DQ~~na~~~~~~G~G~~l~~~~~~~~~l~~ai~~ll 424 (513)
|. .++. +.+.|++++|+|+|+.+. ....+..+.+.... -+.+++.++|.+++
T Consensus 278 l~P~~~~~~~~~~~P~Kl~EylA~G~PVVat~~-------~~~~~~~~~~~~~~---~d~~~~~~ai~~~l 338 (373)
T cd04950 278 ILPFRLNELTRATSPLKLFEYLAAGKPVVATPL-------PEVRRYEDEVVLIA---DDPEEFVAAIEKAL 338 (373)
T ss_pred ecCCccchhhhcCCcchHHHHhccCCCEEecCc-------HHHHhhcCcEEEeC---CCHHHHHHHHHHHH
Confidence 54 2232 458999999999999863 12223334333333 27999999999976
No 125
>PHA01630 putative group 1 glycosyl transferase
Probab=96.73 E-value=0.016 Score=56.86 Aligned_cols=106 Identities=18% Similarity=0.225 Sum_probs=62.3
Q ss_pred CCCcc---ccccCCCceEEec---cCC-cccHHHHHHcCcceEeecccc--CcHH---HHHHHH-----------HcCcE
Q psy14941 347 WMPQR---DIFAHPNMKLFIS---HGG-LLGITEAVYEGIPVLGIPVFG--DQWA---NIKKLE-----------SLKAG 403 (513)
Q Consensus 347 ~~pq~---~lL~h~~~~~~It---hgG-~~s~~Eal~~GvP~i~~P~~~--DQ~~---na~~~~-----------~~G~G 403 (513)
++|+. +++ ..+|+|+. ..| ..++.||+++|+|+|+.-..+ |.-. |...+. -.++|
T Consensus 197 ~v~~~~l~~~y--~~aDv~v~pS~~E~fgl~~lEAMA~G~PVIas~~gg~~E~i~~~~ng~lv~~~~~~~~~~~~~~~~G 274 (331)
T PHA01630 197 PLPDDDIYSLF--AGCDILFYPVRGGAFEIPVIEALALGLDVVVTEKGAWSEWVLSNLDVYWIKSGRKPKLWYTNPIHVG 274 (331)
T ss_pred cCCHHHHHHHH--HhCCEEEECCccccCChHHHHHHHcCCCEEEeCCCCchhhccCCCceEEeeecccccccccCCcccc
Confidence 36655 346 77888874 232 468999999999999986543 2111 111110 02345
Q ss_pred EEeccCCCCHHHHHHHHHHhc-C---HHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q psy14941 404 KLLPYLEITEETVSDALKIVL-S---PEYKENAEDLGTRFRDRPQSPLEVAIYWIEYVIK 459 (513)
Q Consensus 404 ~~l~~~~~~~~~l~~ai~~ll-~---~~y~~~a~~~~~~~~~~~~~~~~~a~~~ie~~~~ 459 (513)
..++. +.+++.+++.+++ | +.+++++++-+....++ ++ .+..++-.+.+++
T Consensus 275 ~~v~~---~~~~~~~~ii~~l~~~~~~~~~~~~~~~~~~~~~~-fs-~~~ia~k~~~l~~ 329 (331)
T PHA01630 275 YFLDP---DIEDAYQKLLEALANWTPEKKKENLEGRAILYREN-YS-YNAIAKMWEKILE 329 (331)
T ss_pred cccCC---CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHh-CC-HHHHHHHHHHHHh
Confidence 55442 5777888888888 6 56776666655555433 34 4555555555543
No 126
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=96.72 E-value=0.34 Score=45.67 Aligned_cols=153 Identities=17% Similarity=0.149 Sum_probs=80.2
Q ss_pred CceEEEEeCccccc---CCCCHHHHHHHHHHHhcCCCeEEEEEcCCC-CCC-CCCCCcEEEe-cCCCccccccCCCceEE
Q psy14941 289 NGVIYFSMGSMLKT---SSFPPDKFKAFLKAFSKIPQRVLWKFEDND-TSI-FKPYKNIRTS-SWMPQRDIFAHPNMKLF 362 (513)
Q Consensus 289 ~~~v~vs~Gs~~~~---~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~-~~~~~nv~~~-~~~pq~~lL~h~~~~~~ 362 (513)
.+.|++-+=+.... .+-..+.+..+++.|.+.+ ++.++.++ ..+ +..-.|+.+. +-++..+|| -.++++
T Consensus 182 ~~yIVmRpe~~~A~y~~g~~~~~~~~~li~~l~k~g---iV~ipr~~~~~eife~~~n~i~pk~~vD~l~Ll--yya~lv 256 (346)
T COG1817 182 ETYIVMRPEPWGAHYDNGDRGISVLPDLIKELKKYG---IVLIPREKEQAEIFEGYRNIIIPKKAVDTLSLL--YYATLV 256 (346)
T ss_pred CceEEEeeccccceeeccccchhhHHHHHHHHHhCc---EEEecCchhHHHHHhhhccccCCcccccHHHHH--hhhhee
Confidence 46666655443221 1233445677777777666 33334322 111 0002333332 234445788 788999
Q ss_pred eccCCcccHHHHHHcCcceEee-ccccCcHHHHHHHHHcCcEEEeccCCCCHHHHHHHHHHhc-CHHHHHHHHHHHHHHh
Q psy14941 363 ISHGGLLGITEAVYEGIPVLGI-PVFGDQWANIKKLESLKAGKLLPYLEITEETVSDALKIVL-SPEYKENAEDLGTRFR 440 (513)
Q Consensus 363 IthgG~~s~~Eal~~GvP~i~~-P~~~DQ~~na~~~~~~G~G~~l~~~~~~~~~l~~ai~~ll-~~~y~~~a~~~~~~~~ 440 (513)
|+-|| ..-.||+.-|+|.|.. |- .-..--....+.| +... ..++.++.+...+.| ++..++.. ..+
T Consensus 257 ig~gg-TMarEaAlLGtpaIs~~pG--kll~vdk~lie~G--~~~~--s~~~~~~~~~a~~~l~~~~~kK~~-----~~k 324 (346)
T COG1817 257 IGAGG-TMAREAALLGTPAISCYPG--KLLAVDKYLIEKG--LLYH--STDEIAIVEYAVRNLKYRRLKKTG-----VLK 324 (346)
T ss_pred ecCCc-hHHHHHHHhCCceEEecCC--ccccccHHHHhcC--ceee--cCCHHHHHHHHHHHhhchhhcccc-----ccc
Confidence 98766 6678999999999986 32 1111222334444 4443 224444444444444 44332211 111
Q ss_pred cCCCChHHHHHHHHHHHHHh
Q psy14941 441 DRPQSPLEVAIYWIEYVIKY 460 (513)
Q Consensus 441 ~~~~~~~~~a~~~ie~~~~~ 460 (513)
..++.+...+.+|++++.
T Consensus 325 --~e~~~~~ii~~ve~~~e~ 342 (346)
T COG1817 325 --LEDPTRLIIDVVEEMLET 342 (346)
T ss_pred --cccHHHHHHHHHHHHhhh
Confidence 226778888888887654
No 127
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=96.55 E-value=0.025 Score=47.61 Aligned_cols=102 Identities=23% Similarity=0.275 Sum_probs=60.5
Q ss_pred eEeEEcCCCCCChHHHHHHHHHHHHhCCCcEEEEEeecCCcc--ccCCeEEEEecCcccchhhHHHHHhhchhHHHHHHH
Q psy14941 28 KILAIFPTPAKSHQIIFDTILVELYQRGHDLTVITQYPETLV--HYERMKVLDIKGTHTYNSTIEDIYELSADSIKRIHI 105 (513)
Q Consensus 28 kIL~~~p~~~~gH~~~~~~la~~L~~rGH~Vt~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (513)
|||.+...+ ..| ...++++|.++||+|++++....... ..+++....++..- . ..+.
T Consensus 1 KIl~i~~~~-~~~---~~~~~~~L~~~g~~V~ii~~~~~~~~~~~~~~i~~~~~~~~~------------k-~~~~---- 59 (139)
T PF13477_consen 1 KILLIGNTP-STF---IYNLAKELKKRGYDVHIITPRNDYEKYEIIEGIKVIRLPSPR------------K-SPLN---- 59 (139)
T ss_pred CEEEEecCc-HHH---HHHHHHHHHHCCCEEEEEEcCCCchhhhHhCCeEEEEecCCC------------C-ccHH----
Confidence 678554443 233 66889999999999999999554322 13556555553110 0 0000
Q ss_pred HHHHHHHHHHHHhCCHhHHHHhccCCCccEEEEccchhchHHh--hhhccC-CCEEEEeC
Q psy14941 106 NFIDQEIQVENIFLHENMKSIWNMENKYDLIITEMFLTDAFLV--IPYLYK-VPYISIAS 162 (513)
Q Consensus 106 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~Dlvi~d~~~~~~~~~--~a~~l~-iP~i~~~~ 162 (513)
. .. . -.+.+.++ +.+||+|.+....+.+.++ +++..+ +|+|....
T Consensus 60 -~------~~-~---~~l~k~ik-~~~~DvIh~h~~~~~~~~~~l~~~~~~~~~~i~~~h 107 (139)
T PF13477_consen 60 -Y------IK-Y---FRLRKIIK-KEKPDVIHCHTPSPYGLFAMLAKKLLKNKKVIYTVH 107 (139)
T ss_pred -H------HH-H---HHHHHHhc-cCCCCEEEEecCChHHHHHHHHHHHcCCCCEEEEec
Confidence 0 00 0 24567787 7889999887654433322 446677 89886554
No 128
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=96.47 E-value=0.071 Score=55.12 Aligned_cols=120 Identities=14% Similarity=0.065 Sum_probs=75.3
Q ss_pred ceEEEEeCcccccCCCCHHHHHHHHHHHhcCCC-eEEEEEcCCC---C------CCCCCCCcEEEecCCCcc-ccccCCC
Q psy14941 290 GVIYFSMGSMLKTSSFPPDKFKAFLKAFSKIPQ-RVLWKFEDND---T------SIFKPYKNIRTSSWMPQR-DIFAHPN 358 (513)
Q Consensus 290 ~~v~vs~Gs~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~---~------~~~~~~~nv~~~~~~pq~-~lL~h~~ 358 (513)
..++.+.|-... .+.....++.+...+.+.+. ++++.-++.. + .+ + .++|++.++..+. +++ ..
T Consensus 398 ~~vIg~VgRl~~-~Kg~~~LI~A~a~llk~~pdirLvIVGdG~~~eeLk~la~elg-L-~d~V~FlG~~~Dv~~~L--aa 472 (578)
T PRK15490 398 DTTIGGVFRFVG-DKNPFAWIDFAARYLQHHPATRFVLVGDGDLRAEAQKRAEQLG-I-LERILFVGASRDVGYWL--QK 472 (578)
T ss_pred CcEEEEEEEEeh-hcCHHHHHHHHHHHHhHCCCeEEEEEeCchhHHHHHHHHHHcC-C-CCcEEECCChhhHHHHH--Hh
Confidence 345555565542 23344555555555555554 5555433321 1 12 3 5889999986543 566 77
Q ss_pred ceEEecc---CC-cccHHHHHHcCcceEeeccccCcHHHHHHHHHcCcEEEeccCCCCHHHHHHHH
Q psy14941 359 MKLFISH---GG-LLGITEAVYEGIPVLGIPVFGDQWANIKKLESLKAGKLLPYLEITEETVSDAL 420 (513)
Q Consensus 359 ~~~~Ith---gG-~~s~~Eal~~GvP~i~~P~~~DQ~~na~~~~~~G~G~~l~~~~~~~~~l~~ai 420 (513)
+++|+.. -| .+++.||+++|+|+|+.... .+...+++...|..++.. +.+.+.+++
T Consensus 473 ADVfVlPS~~EGfp~vlLEAMA~GlPVVATdvG----G~~EiV~dG~nG~LVp~~--D~~aLa~ai 532 (578)
T PRK15490 473 MNVFILFSRYEGLPNVLIEAQMVGVPVISTPAG----GSAECFIEGVSGFILDDA--QTVNLDQAC 532 (578)
T ss_pred CCEEEEcccccCccHHHHHHHHhCCCEEEeCCC----CcHHHcccCCcEEEECCC--ChhhHHHHH
Confidence 8999863 34 47899999999999998653 456667777889998744 444555544
No 129
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=96.20 E-value=0.0062 Score=51.02 Aligned_cols=76 Identities=20% Similarity=0.259 Sum_probs=46.7
Q ss_pred CCcEEEecCCCcc-ccccCCCceEEecc----CC-cccHHHHHHcCcceEeeccccCcHHHHHHHHHcCcEEEeccCCCC
Q psy14941 339 YKNIRTSSWMPQR-DIFAHPNMKLFISH----GG-LLGITEAVYEGIPVLGIPVFGDQWANIKKLESLKAGKLLPYLEIT 412 (513)
Q Consensus 339 ~~nv~~~~~~pq~-~lL~h~~~~~~Ith----gG-~~s~~Eal~~GvP~i~~P~~~DQ~~na~~~~~~G~G~~l~~~~~~ 412 (513)
.+||++.+|+++. +++ .++++.+.- .| .+++.|++++|+|+|+.+. ......+..|.|..+. -+
T Consensus 52 ~~~v~~~g~~~e~~~~l--~~~dv~l~p~~~~~~~~~k~~e~~~~G~pvi~~~~-----~~~~~~~~~~~~~~~~---~~ 121 (135)
T PF13692_consen 52 RPNVRFHGFVEELPEIL--AAADVGLIPSRFNEGFPNKLLEAMAAGKPVIASDN-----GAEGIVEEDGCGVLVA---ND 121 (135)
T ss_dssp HCTEEEE-S-HHHHHHH--HC-SEEEE-BSS-SCC-HHHHHHHCTT--EEEEHH-----HCHCHS---SEEEE-T---T-
T ss_pred CCCEEEcCCHHHHHHHH--HhCCEEEEEeeCCCcCcHHHHHHHHhCCCEEECCc-----chhhheeecCCeEEEC---CC
Confidence 4699999999643 666 445655542 12 3789999999999999875 1223344478887772 28
Q ss_pred HHHHHHHHHHhc
Q psy14941 413 EETVSDALKIVL 424 (513)
Q Consensus 413 ~~~l~~ai~~ll 424 (513)
.+++.++|.+++
T Consensus 122 ~~~l~~~i~~l~ 133 (135)
T PF13692_consen 122 PEELAEAIERLL 133 (135)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999999987
No 130
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=95.76 E-value=0.045 Score=46.79 Aligned_cols=95 Identities=12% Similarity=0.192 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEeecCCcc---ccCCeEEEEecCcccchhhHHHHHhhchhHHHHHHHHHHHHHHHHHHH
Q psy14941 41 QIIFDTILVELYQRGHDLTVITQYPETLV---HYERMKVLDIKGTHTYNSTIEDIYELSADSIKRIHINFIDQEIQVENI 117 (513)
Q Consensus 41 ~~~~~~la~~L~~rGH~Vt~~~~~~~~~~---~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (513)
-..+..++++|+++||+|+++++...... ...++....++.+..... .. .+. . .
T Consensus 4 ~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~-~~~---~-~---------- 60 (160)
T PF13579_consen 4 ERYVRELARALAARGHEVTVVTPQPDPEDDEEEEDGVRVHRLPLPRRPWP--------LR-LLR---F-L---------- 60 (160)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEEE---GGG-SEEETTEEEEEE--S-SSSG--------GG-HCC---H-H----------
T ss_pred HHHHHHHHHHHHHCCCEEEEEecCCCCcccccccCCceEEeccCCccchh--------hh-hHH---H-H----------
Confidence 34678999999999999999998543322 134566655553322110 00 000 0 0
Q ss_pred hCCHhHHHHh--ccCCCccEEEEccchhchHHhhhh-ccCCCEEEEeC
Q psy14941 118 FLHENMKSIW--NMENKYDLIITEMFLTDAFLVIPY-LYKVPYISIAS 162 (513)
Q Consensus 118 ~~~~~l~~~l--~~~~~~Dlvi~d~~~~~~~~~~a~-~l~iP~i~~~~ 162 (513)
..+.+.+ + ..+||+|.+..........+++ ..++|+|....
T Consensus 61 ---~~~~~~l~~~-~~~~Dvv~~~~~~~~~~~~~~~~~~~~p~v~~~h 104 (160)
T PF13579_consen 61 ---RRLRRLLAAR-RERPDVVHAHSPTAGLVAALARRRRGIPLVVTVH 104 (160)
T ss_dssp ---HHHHHHCHHC-T---SEEEEEHHHHHHHHHHHHHHHT--EEEE-S
T ss_pred ---HHHHHHHhhh-ccCCeEEEecccchhHHHHHHHHccCCcEEEEEC
Confidence 1223333 4 6889999998753322223445 77999887654
No 131
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=95.72 E-value=0.074 Score=41.13 Aligned_cols=81 Identities=15% Similarity=0.028 Sum_probs=52.3
Q ss_pred cCCcccHHHHHHcCcceEeeccccCcHHHHHHHHHcC-cEEEeccCCCCHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcC
Q psy14941 365 HGGLLGITEAVYEGIPVLGIPVFGDQWANIKKLESLK-AGKLLPYLEITEETVSDALKIVL-SPEYKENAEDLGTRFRDR 442 (513)
Q Consensus 365 hgG~~s~~Eal~~GvP~i~~P~~~DQ~~na~~~~~~G-~G~~l~~~~~~~~~l~~ai~~ll-~~~y~~~a~~~~~~~~~~ 442 (513)
+|-..-+.|++++|+|+|.-+. ...... -..| -++..+ +.+++.++|..++ |+..+++..+-+...-..
T Consensus 9 ~~~~~r~~E~~a~G~~vi~~~~----~~~~~~-~~~~~~~~~~~----~~~el~~~i~~ll~~~~~~~~ia~~a~~~v~~ 79 (92)
T PF13524_consen 9 DGPNMRIFEAMACGTPVISDDS----PGLREI-FEDGEHIITYN----DPEELAEKIEYLLENPEERRRIAKNARERVLK 79 (92)
T ss_pred CCCchHHHHHHHCCCeEEECCh----HHHHHH-cCCCCeEEEEC----CHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Confidence 4445679999999999999754 333333 2334 445554 8999999999999 887666555555433332
Q ss_pred CCChHHHHHHHH
Q psy14941 443 PQSPLEVAIYWI 454 (513)
Q Consensus 443 ~~~~~~~a~~~i 454 (513)
-.+-..++..++
T Consensus 80 ~~t~~~~~~~il 91 (92)
T PF13524_consen 80 RHTWEHRAEQIL 91 (92)
T ss_pred hCCHHHHHHHHH
Confidence 335555555443
No 132
>PRK14098 glycogen synthase; Provisional
Probab=95.68 E-value=0.064 Score=55.75 Aligned_cols=124 Identities=9% Similarity=0.005 Sum_probs=77.0
Q ss_pred CceEEEEeCcccccCCCCHHHHHHHHHHHhcC---CCeEEEEEcCCC-----CCC---CCCCCcEEEecCCCcc---ccc
Q psy14941 289 NGVIYFSMGSMLKTSSFPPDKFKAFLKAFSKI---PQRVLWKFEDND-----TSI---FKPYKNIRTSSWMPQR---DIF 354 (513)
Q Consensus 289 ~~~v~vs~Gs~~~~~~~~~~~~~~~~~~~~~~---~~~~i~~~~~~~-----~~~---~~~~~nv~~~~~~pq~---~lL 354 (513)
+..++...|... +.+-...+++++.++ +.++++.-+++. +.+ .. +.+|.+...++.. .++
T Consensus 306 ~~~~i~~vgRl~-----~~KG~d~li~a~~~l~~~~~~lvivG~G~~~~~~~l~~l~~~~-~~~V~~~g~~~~~~~~~~~ 379 (489)
T PRK14098 306 ETPLVGVIINFD-----DFQGAELLAESLEKLVELDIQLVICGSGDKEYEKRFQDFAEEH-PEQVSVQTEFTDAFFHLAI 379 (489)
T ss_pred CCCEEEEecccc-----ccCcHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHHHHC-CCCEEEEEecCHHHHHHHH
Confidence 456777778775 334445555555543 345555433321 111 13 6789998888875 566
Q ss_pred cCCCceEEeccCC----cccHHHHHHcCcceEeecccc--CcHHHHHHHHHcCcEEEeccCCCCHHHHHHHHHHhc
Q psy14941 355 AHPNMKLFISHGG----LLGITEAVYEGIPVLGIPVFG--DQWANIKKLESLKAGKLLPYLEITEETVSDALKIVL 424 (513)
Q Consensus 355 ~h~~~~~~IthgG----~~s~~Eal~~GvP~i~~P~~~--DQ~~na~~~~~~G~G~~l~~~~~~~~~l~~ai~~ll 424 (513)
..+|+|+...= ..+.+||+++|+|.|+....+ |.-.+ ..++.+.|..++ .-+.+++.++|.+++
T Consensus 380 --a~aDi~l~PS~~E~~Gl~~lEAma~G~ppVv~~~GGl~d~v~~--~~~~~~~G~l~~--~~d~~~la~ai~~~l 449 (489)
T PRK14098 380 --AGLDMLLMPGKIESCGMLQMFAMSYGTIPVAYAGGGIVETIEE--VSEDKGSGFIFH--DYTPEALVAKLGEAL 449 (489)
T ss_pred --HhCCEEEeCCCCCCchHHHHHHHhCCCCeEEecCCCCceeeec--CCCCCCceeEeC--CCCHHHHHHHHHHHH
Confidence 77899886532 147899999999988876543 21110 111247788887 447899999999864
No 133
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=95.35 E-value=0.54 Score=48.08 Aligned_cols=126 Identities=21% Similarity=0.321 Sum_probs=89.7
Q ss_pred CCceEEEEeCcccccCCCCHHHHHHHHHHHhcCCCeEEEEEcCCC-------------CCCCCCCCcEEEecCCCccccc
Q psy14941 288 HNGVIYFSMGSMLKTSSFPPDKFKAFLKAFSKIPQRVLWKFEDND-------------TSIFKPYKNIRTSSWMPQRDIF 354 (513)
Q Consensus 288 ~~~~v~vs~Gs~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-------------~~~~~~~~nv~~~~~~pq~~lL 354 (513)
++.+||+|++... +..++.+..=.+-++..|..++|..++.. -.+ ++++++++.+-.|..+-+
T Consensus 428 ~~avVf~c~~n~~---K~~pev~~~wmqIL~~vP~Svl~L~~~~~~~~~~~~l~~la~~~G-v~~eRL~f~p~~~~~~h~ 503 (620)
T COG3914 428 EDAVVFCCFNNYF---KITPEVFALWMQILSAVPNSVLLLKAGGDDAEINARLRDLAEREG-VDSERLRFLPPAPNEDHR 503 (620)
T ss_pred CCeEEEEecCCcc---cCCHHHHHHHHHHHHhCCCcEEEEecCCCcHHHHHHHHHHHHHcC-CChhheeecCCCCCHHHH
Confidence 4678999999988 67888888888888899999999877621 112 227888888888876544
Q ss_pred c-CCCceEEec---cCCcccHHHHHHcCcceEeeccccCcHH--HHH-HHHHcCcEEEeccCCCCHHHHHHHHH
Q psy14941 355 A-HPNMKLFIS---HGGLLGITEAVYEGIPVLGIPVFGDQWA--NIK-KLESLKAGKLLPYLEITEETVSDALK 421 (513)
Q Consensus 355 ~-h~~~~~~It---hgG~~s~~Eal~~GvP~i~~P~~~DQ~~--na~-~~~~~G~G~~l~~~~~~~~~l~~ai~ 421 (513)
+ +.-+|+|.- -||..|..|++..||||+..+ |+|+. |+. .+...|+-..+-. -.++=+.+++.
T Consensus 504 a~~~iADlvLDTyPY~g~TTa~daLwm~vPVlT~~--G~~FasR~~~si~~~agi~e~vA~--s~~dYV~~av~ 573 (620)
T COG3914 504 ARYGIADLVLDTYPYGGHTTASDALWMGVPVLTRV--GEQFASRNGASIATNAGIPELVAD--SRADYVEKAVA 573 (620)
T ss_pred HhhchhheeeecccCCCccchHHHHHhcCceeeec--cHHHHHhhhHHHHHhcCCchhhcC--CHHHHHHHHHH
Confidence 3 466777764 699999999999999999986 66653 333 3445676655542 23444555553
No 134
>KOG4626|consensus
Probab=95.30 E-value=0.13 Score=52.71 Aligned_cols=139 Identities=14% Similarity=0.270 Sum_probs=92.9
Q ss_pred CCceEEEEeCcccccCCCCHHHHHHHHHHHhcCCCeEEEEEcCCC-----------CCCCCCCCcEEEecCCCcc-----
Q psy14941 288 HNGVIYFSMGSMLKTSSFPPDKFKAFLKAFSKIPQRVLWKFEDND-----------TSIFKPYKNIRTSSWMPQR----- 351 (513)
Q Consensus 288 ~~~~v~vs~Gs~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-----------~~~~~~~~nv~~~~~~pq~----- 351 (513)
++.+||.+|--.. +..++.++.-++-+.+.|..++|.....- -.+.. |+.|.+.+-.+-.
T Consensus 757 ~d~vvf~~FNqLy---KidP~~l~~W~~ILk~VPnS~LwllrfPa~ge~rf~ty~~~~Gl~-p~riifs~va~k~eHvrr 832 (966)
T KOG4626|consen 757 EDAVVFCNFNQLY---KIDPSTLQMWANILKRVPNSVLWLLRFPAVGEQRFRTYAEQLGLE-PDRIIFSPVAAKEEHVRR 832 (966)
T ss_pred CCeEEEeechhhh---cCCHHHHHHHHHHHHhCCcceeEEEeccccchHHHHHHHHHhCCC-ccceeeccccchHHHHHh
Confidence 4678998888776 78899999999999999999999876521 01212 7777777765532
Q ss_pred ccccCCCceEEeccCCcccHHHHHHcCcceEeecccc-CcHHHHHHHHHcCcEEEeccCCCCHHHHHHHHHHhc-CHHHH
Q psy14941 352 DIFAHPNMKLFISHGGLLGITEAVYEGIPVLGIPVFG-DQWANIKKLESLKAGKLLPYLEITEETVSDALKIVL-SPEYK 429 (513)
Q Consensus 352 ~lL~h~~~~~~IthgG~~s~~Eal~~GvP~i~~P~~~-DQ~~na~~~~~~G~G~~l~~~~~~~~~l~~ai~~ll-~~~y~ 429 (513)
--|++=..|-+.+. |..|.+|.++.|||||.+|.-. --..-+..+...|+|-.+-+ +.++-.+.--++- |..|-
T Consensus 833 ~~LaDv~LDTplcn-GhTTg~dvLw~GvPmVTmpge~lAsrVa~Sll~~~Gl~hliak---~~eEY~~iaV~Latd~~~L 908 (966)
T KOG4626|consen 833 GQLADVCLDTPLCN-GHTTGMDVLWAGVPMVTMPGETLASRVAASLLTALGLGHLIAK---NREEYVQIAVRLATDKEYL 908 (966)
T ss_pred hhhhhhcccCcCcC-CcccchhhhccCCceeecccHHHHHHHHHHHHHHcccHHHHhh---hHHHHHHHHHHhhcCHHHH
Confidence 22333344556665 5688999999999999999743 22233344567899986653 4454444333444 77766
Q ss_pred HHHHH
Q psy14941 430 ENAED 434 (513)
Q Consensus 430 ~~a~~ 434 (513)
++++.
T Consensus 909 ~~lr~ 913 (966)
T KOG4626|consen 909 KKLRA 913 (966)
T ss_pred HHHHH
Confidence 66553
No 135
>PF06722 DUF1205: Protein of unknown function (DUF1205); InterPro: IPR010610 This entry represents a conserved region of unknown function within bacterial glycosyl transferases. Many proteins containing this domain are members of the glycosyl transferase family 28 IPR004276 from INTERPRO.; PDB: 3OTH_A 3OTG_A 3OTI_A 3D0R_A 3D0Q_B 2P6P_A 3UYK_A 3UYL_B 3TSA_B 2YJN_A.
Probab=94.30 E-value=0.081 Score=41.29 Aligned_cols=60 Identities=15% Similarity=0.216 Sum_probs=44.8
Q ss_pred HHhhcC-CCceEEEEeCcccccCCCC--HHHHHHHHHHHhcCCCeEEEEEcCCCC---CCCCCCCcEE
Q psy14941 282 RFLNES-HNGVIYFSMGSMLKTSSFP--PDKFKAFLKAFSKIPQRVLWKFEDNDT---SIFKPYKNIR 343 (513)
Q Consensus 282 ~~l~~~-~~~~v~vs~Gs~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~~~~nv~ 343 (513)
.|+... +++.|.+|+||........ ...+..++++++.++..++...+..+. .. + |+||+
T Consensus 32 ~Wl~~~~~RpRVcvT~G~~~~~~~g~~~~~~l~~ll~ala~ldvEvV~a~~~~~~~~lg~-l-P~nVR 97 (97)
T PF06722_consen 32 DWLLEPPGRPRVCVTLGTSVRMFFGPGGVPLLRRLLEALAGLDVEVVVALPAAQRAELGE-L-PDNVR 97 (97)
T ss_dssp GGGSSSTSSEEEEEEETHHHCHHHSCHHHCHHHHHHHHHHTSSSEEEEEETTCCCGGCCS---TTTEE
T ss_pred cccccCCCCCEEEEEcCCCccccccccchHHHHHHHHHHhhCCcEEEEECCHHHHHhhCC-C-CCCCC
Confidence 365544 7899999999998421112 258999999999999999999988654 34 6 88875
No 136
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=94.29 E-value=0.18 Score=52.61 Aligned_cols=84 Identities=15% Similarity=0.211 Sum_probs=64.2
Q ss_pred CcEEEecCCCcc---ccccCCCceEEeccC---CcccHHHHHHcCcceEeeccccCcHHHHHHHHHcCcEEEeccCCCCH
Q psy14941 340 KNIRTSSWMPQR---DIFAHPNMKLFISHG---GLLGITEAVYEGIPVLGIPVFGDQWANIKKLESLKAGKLLPYLEITE 413 (513)
Q Consensus 340 ~nv~~~~~~pq~---~lL~h~~~~~~Ithg---G~~s~~Eal~~GvP~i~~P~~~DQ~~na~~~~~~G~G~~l~~~~~~~ 413 (513)
..|.+.++.+.. ..+ ..++++|.=+ |.++..||+.+|+|+| .......+++..=|..+. +.
T Consensus 409 ~~v~f~gy~~e~dl~~~~--~~arl~id~s~~eg~~~~ieAiS~GiPqI-------nyg~~~~V~d~~NG~li~----d~ 475 (519)
T TIGR03713 409 ERIAFTTLTNEEDLISAL--DKLRLIIDLSKEPDLYTQISGISAGIPQI-------NKVETDYVEHNKNGYIID----DI 475 (519)
T ss_pred cEEEEEecCCHHHHHHHH--hhheEEEECCCCCChHHHHHHHHcCCCee-------ecCCceeeEcCCCcEEeC----CH
Confidence 688888888732 555 7788988766 6679999999999999 444566677777788885 78
Q ss_pred HHHHHHHHHhc-CHHHHHHHHHHH
Q psy14941 414 ETVSDALKIVL-SPEYKENAEDLG 436 (513)
Q Consensus 414 ~~l~~ai~~ll-~~~y~~~a~~~~ 436 (513)
++|.++|..+| +.+-.+.+..-|
T Consensus 476 ~~l~~al~~~L~~~~~wn~~~~~s 499 (519)
T TIGR03713 476 SELLKALDYYLDNLKNWNYSLAYS 499 (519)
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHH
Confidence 99999999999 875444444433
No 137
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=94.28 E-value=0.72 Score=44.07 Aligned_cols=39 Identities=18% Similarity=0.146 Sum_probs=32.5
Q ss_pred eEeEEcCCCCCChHHHHHHHHHHHHhCC--CcEEEEEeecCC
Q psy14941 28 KILAIFPTPAKSHQIIFDTILVELYQRG--HDLTVITQYPET 67 (513)
Q Consensus 28 kIL~~~p~~~~gH~~~~~~la~~L~~rG--H~Vt~~~~~~~~ 67 (513)
||| ++-..+-|++.-+.++.++|+++. -+|++++.....
T Consensus 1 kIL-ii~~~~iGD~i~~~p~l~~Lk~~~P~~~I~~l~~~~~~ 41 (279)
T cd03789 1 RIL-VIRLSWIGDVVLATPLLRALKARYPDARITVLAPPWFA 41 (279)
T ss_pred CEE-EEecccHHHHHHHHHHHHHHHHHCCCCEEEEEEChhhH
Confidence 688 555568999999999999999975 789999986543
No 138
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=94.23 E-value=1.5 Score=42.43 Aligned_cols=162 Identities=15% Similarity=0.182 Sum_probs=95.2
Q ss_pred cCccEEEEeccCccCCCccCCCce-EEeCcccccCCCCCcHHHHHH---hhcCCCceEEEEeCcccccCCCCHHHHHHHH
Q psy14941 239 NTCSLTLVNTHHTINIARPLPANV-VEIGGIHVKPAKKLNEEMERF---LNESHNGVIYFSMGSMLKTSSFPPDKFKAFL 314 (513)
Q Consensus 239 ~~~~l~l~~s~~~l~~~~p~~p~~-~~vG~l~~~~~~~l~~~l~~~---l~~~~~~~v~vs~Gs~~~~~~~~~~~~~~~~ 314 (513)
...|+++++.|..+. ..||+ ...|+++.-.+..+.++-.+| +....++.+-|-.|...+......+....++
T Consensus 96 ~~FDlvi~p~HD~~~----~~~Nvl~t~ga~~~i~~~~l~~a~~~~~~~~~~l~~p~~avLIGG~s~~~~~~~~~~~~l~ 171 (311)
T PF06258_consen 96 RPFDLVIVPEHDRLP----RGPNVLPTLGAPNRITPERLAEAAAAWAPRLAALPRPRVAVLIGGDSKHYRWDEEDAERLL 171 (311)
T ss_pred cccCEEEECcccCcC----CCCceEecccCCCcCCHHHHHHHHHhhhhhhccCCCCeEEEEECcCCCCcccCHHHHHHHH
Confidence 345899998777431 34666 446777755444444443344 3333688888888987766677777555544
Q ss_pred HHHh----cCCCeEEEEEcCCCC-------CCCC-CCCcEEEecCC---CccccccCCCce-EEeccCCcccHHHHHHcC
Q psy14941 315 KAFS----KIPQRVLWKFEDNDT-------SIFK-PYKNIRTSSWM---PQRDIFAHPNMK-LFISHGGLLGITEAVYEG 378 (513)
Q Consensus 315 ~~~~----~~~~~~i~~~~~~~~-------~~~~-~~~nv~~~~~~---pq~~lL~h~~~~-~~IthgG~~s~~Eal~~G 378 (513)
+.+. ..+..+.+..+.... .+.. ..+.+.+-+-- |...+|+ .++ ++||---.+.+.||+..|
T Consensus 172 ~~l~~~~~~~~~~~~vttSRRTp~~~~~~L~~~~~~~~~~~~~~~~~~nPy~~~La--~ad~i~VT~DSvSMvsEA~~tG 249 (311)
T PF06258_consen 172 DQLAALAAAYGGSLLVTTSRRTPPEAEAALRELLKDNPGVYIWDGTGENPYLGFLA--AADAIVVTEDSVSMVSEAAATG 249 (311)
T ss_pred HHHHHHHHhCCCeEEEEcCCCCcHHHHHHHHHhhcCCCceEEecCCCCCcHHHHHH--hCCEEEEcCccHHHHHHHHHcC
Confidence 4443 334466666655321 1101 03444333322 4557784 445 455555568899999999
Q ss_pred cceEeeccccCcHH----HHHHHHHcCcEEEec
Q psy14941 379 IPVLGIPVFGDQWA----NIKKLESLKAGKLLP 407 (513)
Q Consensus 379 vP~i~~P~~~DQ~~----na~~~~~~G~G~~l~ 407 (513)
+|+.++|+-+ +.. ..+.+++.|.-...+
T Consensus 250 ~pV~v~~l~~-~~~r~~r~~~~L~~~g~~r~~~ 281 (311)
T PF06258_consen 250 KPVYVLPLPG-RSGRFRRFHQSLEERGAVRPFT 281 (311)
T ss_pred CCEEEecCCC-cchHHHHHHHHHHHCCCEEECC
Confidence 9999998876 322 233455567666654
No 139
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=93.88 E-value=1.7 Score=44.22 Aligned_cols=95 Identities=13% Similarity=0.199 Sum_probs=69.5
Q ss_pred ccccCCCceEEeccCCcccHHHHHHcCcceEeeccccCcHHHHHHHHHcCcEEE-eccCCCCHHHHHHHHHHhc-C-HHH
Q psy14941 352 DIFAHPNMKLFISHGGLLGITEAVYEGIPVLGIPVFGDQWANIKKLESLKAGKL-LPYLEITEETVSDALKIVL-S-PEY 428 (513)
Q Consensus 352 ~lL~h~~~~~~IthgG~~s~~Eal~~GvP~i~~P~~~DQ~~na~~~~~~G~G~~-l~~~~~~~~~l~~ai~~ll-~-~~y 428 (513)
.++ .+|+++|.. =+-+..-|+..|||.++++. | +.....+++.|.... .+.++++.++|.+.+.+++ | +.+
T Consensus 323 ~iI--s~~dl~ig~-RlHa~I~a~~~gvP~i~i~Y--~-~K~~~~~~~lg~~~~~~~~~~l~~~~Li~~v~~~~~~r~~~ 396 (426)
T PRK10017 323 KIL--GACELTVGT-RLHSAIISMNFGTPAIAINY--E-HKSAGIMQQLGLPEMAIDIRHLLDGSLQAMVADTLGQLPAL 396 (426)
T ss_pred HHH--hhCCEEEEe-cchHHHHHHHcCCCEEEeee--h-HHHHHHHHHcCCccEEechhhCCHHHHHHHHHHHHhCHHHH
Confidence 666 788988864 34456778889999999987 3 455555688888855 7778899999999999999 6 678
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHH
Q psy14941 429 KENAEDLGTRFRDRPQSPLEVAIYWIE 455 (513)
Q Consensus 429 ~~~a~~~~~~~~~~~~~~~~~a~~~ie 455 (513)
+++.++..+.++.+ +.+.+.+.++
T Consensus 397 ~~~l~~~v~~~r~~---~~~~~~~~~~ 420 (426)
T PRK10017 397 NARLAEAVSRERQT---GMQMVQSVLE 420 (426)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 88777777766543 3444444443
No 140
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=93.21 E-value=0.093 Score=46.00 Aligned_cols=42 Identities=17% Similarity=0.251 Sum_probs=29.2
Q ss_pred HhHHHHhccCCCccEEEEccchhchH-Hhhhhc---c-CCCEEEEeCC
Q psy14941 121 ENMKSIWNMENKYDLIITEMFLTDAF-LVIPYL---Y-KVPYISIASS 163 (513)
Q Consensus 121 ~~l~~~l~~~~~~Dlvi~d~~~~~~~-~~~a~~---l-~iP~i~~~~~ 163 (513)
+.+.+.|+ +.+||+||+.+.++... +...+. + ++|++.+.|-
T Consensus 79 ~~l~~~l~-~~~PD~IIsThp~~~~~~l~~lk~~~~~~~~p~~tvvTD 125 (169)
T PF06925_consen 79 RRLIRLLR-EFQPDLIISTHPFPAQVPLSRLKRRGRLPNIPVVTVVTD 125 (169)
T ss_pred HHHHHHHh-hcCCCEEEECCcchhhhHHHHHHHhhcccCCcEEEEEcC
Confidence 46788887 79999999999875544 332222 3 4788777663
No 141
>PRK14099 glycogen synthase; Provisional
Probab=92.78 E-value=0.98 Score=46.95 Aligned_cols=138 Identities=11% Similarity=0.074 Sum_probs=74.9
Q ss_pred ceEEEEeCcccccCCCCHHHHHHHHHHHhcC---CCeEEEEEcCCC-----CCC---CCCCCcE-EEecCCCcc-ccccC
Q psy14941 290 GVIYFSMGSMLKTSSFPPDKFKAFLKAFSKI---PQRVLWKFEDND-----TSI---FKPYKNI-RTSSWMPQR-DIFAH 356 (513)
Q Consensus 290 ~~v~vs~Gs~~~~~~~~~~~~~~~~~~~~~~---~~~~i~~~~~~~-----~~~---~~~~~nv-~~~~~~pq~-~lL~h 356 (513)
..++...|... +.+-+..+++++..+ +.++++.-+++. +.+ .. +.++ .+.++-.+. .++ .
T Consensus 295 ~~li~~VgRL~-----~~KG~d~Li~A~~~l~~~~~~lvivG~G~~~~~~~l~~l~~~~-~~~v~~~~G~~~~l~~~~-~ 367 (485)
T PRK14099 295 ALLLGVISRLS-----WQKGLDLLLEALPTLLGEGAQLALLGSGDAELEARFRAAAQAY-PGQIGVVIGYDEALAHLI-Q 367 (485)
T ss_pred CcEEEEEecCC-----ccccHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHHHHC-CCCEEEEeCCCHHHHHHH-H
Confidence 34555566665 444555666666543 345555544321 111 02 4455 466662221 111 2
Q ss_pred CCceEEecc---CC-cccHHHHHHcCcceEeecccc--CcHHHHHH-HH--HcCcEEEeccCCCCHHHHHHHHHH---hc
Q psy14941 357 PNMKLFISH---GG-LLGITEAVYEGIPVLGIPVFG--DQWANIKK-LE--SLKAGKLLPYLEITEETVSDALKI---VL 424 (513)
Q Consensus 357 ~~~~~~Ith---gG-~~s~~Eal~~GvP~i~~P~~~--DQ~~na~~-~~--~~G~G~~l~~~~~~~~~l~~ai~~---ll 424 (513)
..+|+|+.- =| ..+.+||+++|.|.|+....+ |--.+... .+ ..+.|..++. -+.+++.++|.+ ++
T Consensus 368 a~aDifv~PS~~E~fGl~~lEAma~G~ppVvs~~GGl~d~V~~~~~~~~~~~~~~G~l~~~--~d~~~La~ai~~a~~l~ 445 (485)
T PRK14099 368 AGADALLVPSRFEPCGLTQLCALRYGAVPVVARVGGLADTVVDANEMAIATGVATGVQFSP--VTADALAAALRKTAALF 445 (485)
T ss_pred hcCCEEEECCccCCCcHHHHHHHHCCCCcEEeCCCCccceeecccccccccCCCceEEeCC--CCHHHHHHHHHHHHHHh
Confidence 458888853 22 357899999997777664432 31111100 01 1157888874 478999999997 56
Q ss_pred -CHHHHHHHHHHH
Q psy14941 425 -SPEYKENAEDLG 436 (513)
Q Consensus 425 -~~~y~~~a~~~~ 436 (513)
|+..++++.+-+
T Consensus 446 ~d~~~~~~l~~~~ 458 (485)
T PRK14099 446 ADPVAWRRLQRNG 458 (485)
T ss_pred cCHHHHHHHHHHh
Confidence 776655555543
No 142
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=92.65 E-value=0.52 Score=40.87 Aligned_cols=33 Identities=18% Similarity=0.283 Sum_probs=25.5
Q ss_pred CCChHHHHHHHHHHHHhCCCcEEEEEeecCCcc
Q psy14941 37 AKSHQIIFDTILVELYQRGHDLTVITQYPETLV 69 (513)
Q Consensus 37 ~~gH~~~~~~la~~L~~rGH~Vt~~~~~~~~~~ 69 (513)
..|--..+..++++|+++||+|+++++......
T Consensus 11 ~GG~e~~~~~l~~~l~~~G~~v~v~~~~~~~~~ 43 (177)
T PF13439_consen 11 IGGAERVVLNLARALAKRGHEVTVVSPGVKDPI 43 (177)
T ss_dssp SSHHHHHHHHHHHHHHHTT-EEEEEESS-TTS-
T ss_pred CChHHHHHHHHHHHHHHCCCEEEEEEcCCCccc
Confidence 457888999999999999999999987654433
No 143
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=90.82 E-value=5.6 Score=38.21 Aligned_cols=88 Identities=26% Similarity=0.451 Sum_probs=56.0
Q ss_pred CCcEEEecCCCcc---ccccCCCceEEecc---CCc-ccHHHHHHcCcceEeeccccCcHHHHHHHHHcCcEEEeccCCC
Q psy14941 339 YKNIRTSSWMPQR---DIFAHPNMKLFISH---GGL-LGITEAVYEGIPVLGIPVFGDQWANIKKLESLKAGKLLPYLEI 411 (513)
Q Consensus 339 ~~nv~~~~~~pq~---~lL~h~~~~~~Ith---gG~-~s~~Eal~~GvP~i~~P~~~DQ~~na~~~~~~G~G~~l~~~~~ 411 (513)
.+++.+.+++|+. .++ ..+++++.. .|. .++.||+++|+|+|+.... .....+...+.|..... .
T Consensus 256 ~~~v~~~g~~~~~~~~~~~--~~~~~~v~ps~~e~~~~~~~Ea~a~g~pvi~~~~~----~~~e~~~~~~~g~~~~~-~- 327 (381)
T COG0438 256 EDNVKFLGYVPDEELAELL--ASADVFVLPSLSEGFGLVLLEAMAAGTPVIASDVG----GIPEVVEDGETGLLVPP-G- 327 (381)
T ss_pred CCcEEEecccCHHHHHHHH--HhCCEEEeccccccchHHHHHHHhcCCcEEECCCC----ChHHHhcCCCceEecCC-C-
Confidence 3678888888832 445 445666666 344 3469999999999887443 23333333334663332 2
Q ss_pred CHHHHHHHHHHhc-CHHHHHHHHH
Q psy14941 412 TEETVSDALKIVL-SPEYKENAED 434 (513)
Q Consensus 412 ~~~~l~~ai~~ll-~~~y~~~a~~ 434 (513)
+.+++.+++..++ +.+.++...+
T Consensus 328 ~~~~~~~~i~~~~~~~~~~~~~~~ 351 (381)
T COG0438 328 DVEELADALEQLLEDPELREELGE 351 (381)
T ss_pred CHHHHHHHHHHHhcCHHHHHHHHH
Confidence 6899999999999 7744444443
No 144
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=89.36 E-value=3.4 Score=42.20 Aligned_cols=122 Identities=16% Similarity=0.247 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHhcCCC-eEEEEEcCC------CCCCCCCCCcEEEec-CCCc--cccccCCCceEEeccCCc--ccHHHH
Q psy14941 307 PDKFKAFLKAFSKIPQ-RVLWKFEDN------DTSIFKPYKNIRTSS-WMPQ--RDIFAHPNMKLFISHGGL--LGITEA 374 (513)
Q Consensus 307 ~~~~~~~~~~~~~~~~-~~i~~~~~~------~~~~~~~~~nv~~~~-~~pq--~~lL~h~~~~~~IthgG~--~s~~Ea 374 (513)
.+.++.+....+++|. +|-...+.+ ++.+ -+|+.+.+ +.++ .+++....+-+-|+||+. +++.||
T Consensus 291 s~~I~~i~~Lv~~lPd~~f~Iga~te~s~kL~~L~~---y~nvvly~~~~~~~l~~ly~~~dlyLdin~~e~~~~al~eA 367 (438)
T TIGR02919 291 SDQIEHLEEIVQALPDYHFHIAALTEMSSKLMSLDK---YDNVKLYPNITTQKIQELYQTCDIYLDINHGNEILNAVRRA 367 (438)
T ss_pred HHHHHHHHHHHHhCCCcEEEEEecCcccHHHHHHHh---cCCcEEECCcChHHHHHHHHhccEEEEccccccHHHHHHHH
Confidence 5677777777788887 665544433 1322 45655544 5662 377866666666788764 789999
Q ss_pred HHcCcceEeeccccCcHHHHHHHHHcCcEEEeccCCCCHHHHHHHHHHhc-CH-HHHHHHHHHHHHH
Q psy14941 375 VYEGIPVLGIPVFGDQWANIKKLESLKAGKLLPYLEITEETVSDALKIVL-SP-EYKENAEDLGTRF 439 (513)
Q Consensus 375 l~~GvP~i~~P~~~DQ~~na~~~~~~G~G~~l~~~~~~~~~l~~ai~~ll-~~-~y~~~a~~~~~~~ 439 (513)
+.+|+|+++.=.... +...+.. |...+. -+.+++.++|.++| |+ .++++..+-++..
T Consensus 368 ~~~G~pI~afd~t~~---~~~~i~~---g~l~~~--~~~~~m~~~i~~lL~d~~~~~~~~~~q~~~a 426 (438)
T TIGR02919 368 FEYNLLILGFEETAH---NRDFIAS---ENIFEH--NEVDQLISKLKDLLNDPNQFRELLEQQREHA 426 (438)
T ss_pred HHcCCcEEEEecccC---CcccccC---CceecC--CCHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 999999999743211 1111222 555553 36899999999999 87 4555555444433
No 145
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=88.65 E-value=14 Score=38.08 Aligned_cols=89 Identities=20% Similarity=0.190 Sum_probs=54.1
Q ss_pred EEecCCCcccccc-CCCceEEec---cCCc-ccHHHHHHcCcc----eEeeccccCcHHHHHHHHHcCcEEEeccCCCCH
Q psy14941 343 RTSSWMPQRDIFA-HPNMKLFIS---HGGL-LGITEAVYEGIP----VLGIPVFGDQWANIKKLESLKAGKLLPYLEITE 413 (513)
Q Consensus 343 ~~~~~~pq~~lL~-h~~~~~~It---hgG~-~s~~Eal~~GvP----~i~~P~~~DQ~~na~~~~~~G~G~~l~~~~~~~ 413 (513)
.+.+++++.++.+ ...+|+|+. .-|+ .++.||+++|+| +|+.-..|--.. ..-|+.++. -+.
T Consensus 344 ~~~g~v~~~el~~~y~~aDv~v~pS~~Eg~~lv~lEAma~g~p~~g~vV~S~~~G~~~~-------~~~g~lv~p--~d~ 414 (460)
T cd03788 344 YLYRSLPREELAALYRAADVALVTPLRDGMNLVAKEYVACQDDDPGVLILSEFAGAAEE-------LSGALLVNP--YDI 414 (460)
T ss_pred EEeCCCCHHHHHHHHHhccEEEeCccccccCcccceeEEEecCCCceEEEeccccchhh-------cCCCEEECC--CCH
Confidence 3456777764421 277888885 3344 577999999999 555433221111 234677763 478
Q ss_pred HHHHHHHHHhc-CH--HHHHHHHHHHHHHh
Q psy14941 414 ETVSDALKIVL-SP--EYKENAEDLGTRFR 440 (513)
Q Consensus 414 ~~l~~ai~~ll-~~--~y~~~a~~~~~~~~ 440 (513)
+++.++|.+++ ++ ..++..++..+.+.
T Consensus 415 ~~la~ai~~~l~~~~~e~~~~~~~~~~~v~ 444 (460)
T cd03788 415 DEVADAIHRALTMPLEERRERHRKLREYVR 444 (460)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 99999999999 53 33333444444443
No 146
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=88.63 E-value=3.3 Score=40.21 Aligned_cols=42 Identities=14% Similarity=0.222 Sum_probs=35.6
Q ss_pred ceEeEEcCCCCCChHHHHHHHHHHHHhCCCcEEEEEeecCCc
Q psy14941 27 SKILAIFPTPAKSHQIIFDTILVELYQRGHDLTVITQYPETL 68 (513)
Q Consensus 27 ~kIL~~~p~~~~gH~~~~~~la~~L~~rGH~Vt~~~~~~~~~ 68 (513)
.||+++..-+|-|=..-..++|-.|++.|++|.++++++...
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvStDPAhs 43 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVSTDPAHS 43 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEEEeCCCCc
Confidence 578877777888998888999999999999988888877543
No 147
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=88.27 E-value=1.4 Score=42.59 Aligned_cols=40 Identities=15% Similarity=0.235 Sum_probs=34.6
Q ss_pred eEeEEcCCCCCChHHHHHHHHHHHHhCCCcEEEEEeecCC
Q psy14941 28 KILAIFPTPAKSHQIIFDTILVELYQRGHDLTVITQYPET 67 (513)
Q Consensus 28 kIL~~~p~~~~gH~~~~~~la~~L~~rGH~Vt~~~~~~~~ 67 (513)
|++++..-+|-|=.....++|-.++++|++|.++++++..
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~~G~rtLlvS~Dpa~ 41 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALARRGKRTLLVSTDPAH 41 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEESSTTT
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhhCCCCeeEeecCCCc
Confidence 6787888888999999999999999999999999998753
No 148
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=87.71 E-value=3.3 Score=41.29 Aligned_cols=136 Identities=16% Similarity=0.142 Sum_probs=76.9
Q ss_pred HHHHHHHHhcCCCeEEEEEcC---CCC---CCCCCCCcEEEecC-CCccccccCCCceEEeccCCcccHHHHHHcCcceE
Q psy14941 310 FKAFLKAFSKIPQRVLWKFED---NDT---SIFKPYKNIRTSSW-MPQRDIFAHPNMKLFISHGGLLGITEAVYEGIPVL 382 (513)
Q Consensus 310 ~~~~~~~~~~~~~~~i~~~~~---~~~---~~~~~~~nv~~~~~-~pq~~lL~h~~~~~~IthgG~~s~~Eal~~GvP~i 382 (513)
.+.+. .+.+.+..++++..+ ... .. . .+|+...+. .+-.++| ..+|++||--. ..+.|.+..++|+|
T Consensus 219 ~~~l~-~~~~~~~~li~k~Hp~~~~~~~~~~~-~-~~~i~~~~~~~~~~~ll--~~aDiLITDyS-Si~fD~~~l~KPii 292 (369)
T PF04464_consen 219 FEKLN-FLLKNNYVLIIKPHPNMKKKFKDFKE-D-NSNIIFVSDNEDIYDLL--AAADILITDYS-SIIFDFLLLNKPII 292 (369)
T ss_dssp HHHHH-HHHTTTEEEEE--SHHHHTT----TT---TTTEEE-TT-S-HHHHH--HT-SEEEESS--THHHHHGGGT--EE
T ss_pred HHHHH-HHhCCCcEEEEEeCchhhhchhhhhc-c-CCcEEECCCCCCHHHHH--HhcCEEEEech-hHHHHHHHhCCCEE
Confidence 34444 444545566766544 111 12 3 677776554 4566889 78999999874 57899999999999
Q ss_pred eeccccCcHHHHH----HHHHcCcEEEeccCCCCHHHHHHHHHHhc-C-HHHHHHHHHHHHHHhcC-CCChHHHHHHHHH
Q psy14941 383 GIPVFGDQWANIK----KLESLKAGKLLPYLEITEETVSDALKIVL-S-PEYKENAEDLGTRFRDR-PQSPLEVAIYWIE 455 (513)
Q Consensus 383 ~~P~~~DQ~~na~----~~~~~G~G~~l~~~~~~~~~l~~ai~~ll-~-~~y~~~a~~~~~~~~~~-~~~~~~~a~~~ie 455 (513)
....-.|+..+.+ -.+....|..+. +.++|.++|.+++ + ..++++.++..+.+-.. ..++.++.+++|.
T Consensus 293 fy~~D~~~Y~~~rg~~~~~~~~~pg~~~~----~~~eL~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Dg~s~eri~~~I~ 368 (369)
T PF04464_consen 293 FYQPDLEEYEKERGFYFDYEEDLPGPIVY----NFEELIEAIENIIENPDEYKEKREKFRDKFFKYNDGNSSERIVNYIF 368 (369)
T ss_dssp EE-TTTTTTTTTSSBSS-TTTSSSS-EES----SHHHHHHHHTTHHHHHHHTHHHHHHHHHHHSTT--S-HHHHHHHHHH
T ss_pred EEeccHHHHhhccCCCCchHhhCCCceeC----CHHHHHHHHHhhhhCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHh
Confidence 8765444442210 011223343333 7899999999998 5 45666677777776432 2356777766654
No 149
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=87.17 E-value=4.2 Score=35.46 Aligned_cols=94 Identities=12% Similarity=0.197 Sum_probs=46.9
Q ss_pred hCCCcEEEEEeecCCccccCCeEEEEecCcccchhhHHHHHhhchhHHHHHHHHHHHHHHHHHHHhCCHhHHHHhccCCC
Q psy14941 53 QRGHDLTVITQYPETLVHYERMKVLDIKGTHTYNSTIEDIYELSADSIKRIHINFIDQEIQVENIFLHENMKSIWNMENK 132 (513)
Q Consensus 53 ~rGH~Vt~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 132 (513)
++||+|++++....... .++++.+.+............ .. ..+..- . .+.+..+ ..++++.+....
T Consensus 1 q~gh~v~fl~~~~~~~~-~~GV~~~~y~~~~~~~~~~~~---~~-~~~e~~---~----~rg~av~--~a~~~L~~~Gf~ 66 (171)
T PF12000_consen 1 QRGHEVVFLTERKRPPI-PPGVRVVRYRPPRGPTPGTHP---YV-RDFEAA---V----LRGQAVA--RAARQLRAQGFV 66 (171)
T ss_pred CCCCEEEEEecCCCCCC-CCCcEEEEeCCCCCCCCCCCc---cc-ccHHHH---H----HHHHHHH--HHHHHHHHcCCC
Confidence 58999999996444443 347777766432111100000 00 001000 0 0011111 223344333567
Q ss_pred ccEEEEccchhchHHhhhhcc-CCCEEEEe
Q psy14941 133 YDLIITEMFLTDAFLVIPYLY-KVPYISIA 161 (513)
Q Consensus 133 ~Dlvi~d~~~~~~~~~~a~~l-~iP~i~~~ 161 (513)
||+|+...-.-..+ -+-+.+ ++|.+.+.
T Consensus 67 PDvI~~H~GWGe~L-flkdv~P~a~li~Y~ 95 (171)
T PF12000_consen 67 PDVIIAHPGWGETL-FLKDVFPDAPLIGYF 95 (171)
T ss_pred CCEEEEcCCcchhh-hHHHhCCCCcEEEEE
Confidence 89999976644444 477778 88977654
No 150
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=86.10 E-value=5.2 Score=37.60 Aligned_cols=39 Identities=13% Similarity=0.192 Sum_probs=34.5
Q ss_pred eEeEEcCCCCCChHHHHHHHHHHHHhCCCcEEEEEeecC
Q psy14941 28 KILAIFPTPAKSHQIIFDTILVELYQRGHDLTVITQYPE 66 (513)
Q Consensus 28 kIL~~~p~~~~gH~~~~~~la~~L~~rGH~Vt~~~~~~~ 66 (513)
|++++..-+|.|-......+|..++++|++|.++..++.
T Consensus 1 ~~~~~~gkgG~GKtt~a~~la~~~a~~g~~vLlvd~D~~ 39 (254)
T cd00550 1 RYIFFGGKGGVGKTTISAATAVRLAEQGKKVLLVSTDPA 39 (254)
T ss_pred CEEEEECCCCchHHHHHHHHHHHHHHCCCCceEEeCCCc
Confidence 567788888999999999999999999999999988664
No 151
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=85.84 E-value=7.2 Score=40.16 Aligned_cols=100 Identities=17% Similarity=0.216 Sum_probs=65.3
Q ss_pred EecCCCcccccc-CCCceEEecc---CCc-ccHHHHHHcCcc----eEeeccccCcHHHHHHHHHcCcEEEeccCCCCHH
Q psy14941 344 TSSWMPQRDIFA-HPNMKLFISH---GGL-LGITEAVYEGIP----VLGIPVFGDQWANIKKLESLKAGKLLPYLEITEE 414 (513)
Q Consensus 344 ~~~~~pq~~lL~-h~~~~~~Ith---gG~-~s~~Eal~~GvP----~i~~P~~~DQ~~na~~~~~~G~G~~l~~~~~~~~ 414 (513)
+...+|+.++.+ ...+|+|+.- -|+ ++..||+++|+| +|+.-..|-- ..+ +-|+.+++ -+.+
T Consensus 340 l~~~~~~~el~aly~aaDv~vv~S~~EG~~Lv~lEamA~g~P~~g~vVlS~~~G~~----~~l---~~gllVnP--~d~~ 410 (456)
T TIGR02400 340 LNRSYDREELMALYRAADVGLVTPLRDGMNLVAKEYVAAQDPKDGVLILSEFAGAA----QEL---NGALLVNP--YDID 410 (456)
T ss_pred EcCCCCHHHHHHHHHhCcEEEECccccccCccHHHHHHhcCCCCceEEEeCCCCCh----HHh---CCcEEECC--CCHH
Confidence 344566664422 2778888863 354 578999999999 7776554422 222 25777774 4789
Q ss_pred HHHHHHHHhc-C--HHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q psy14941 415 TVSDALKIVL-S--PEYKENAEDLGTRFRDRPQSPLEVAIYWIEYVI 458 (513)
Q Consensus 415 ~l~~ai~~ll-~--~~y~~~a~~~~~~~~~~~~~~~~~a~~~ie~~~ 458 (513)
++.++|.+++ + ++.+++++++.+.+... + ..+|.+..+
T Consensus 411 ~lA~aI~~aL~~~~~er~~r~~~~~~~v~~~--~----~~~W~~~~l 451 (456)
T TIGR02400 411 GMADAIARALTMPLEEREERHRAMMDKLRKN--D----VQRWREDFL 451 (456)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhC--C----HHHHHHHHH
Confidence 9999999998 3 45666677777766543 3 345666544
No 152
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=85.49 E-value=4.2 Score=35.52 Aligned_cols=35 Identities=23% Similarity=0.092 Sum_probs=24.4
Q ss_pred CCCccEEEEccchhchHH-hhhhcc------CCCEEEEeCCC
Q psy14941 130 ENKYDLIITEMFLTDAFL-VIPYLY------KVPYISIASST 164 (513)
Q Consensus 130 ~~~~Dlvi~d~~~~~~~~-~~a~~l------~iP~i~~~~~~ 164 (513)
..+||+||+.....+... .+|+.+ |.+.|++-+..
T Consensus 90 r~rPdvii~nGpg~~vp~~~~~~l~~~~~~~~~kiIyIES~a 131 (170)
T PF08660_consen 90 RERPDVIISNGPGTCVPVCLAAKLLRLLGLRGSKIIYIESFA 131 (170)
T ss_pred HhCCCEEEEcCCceeeHHHHHHHHHHHhhccCCcEEEEEeee
Confidence 467999999875433222 256777 89999987743
No 153
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=84.88 E-value=2.4 Score=40.28 Aligned_cols=74 Identities=11% Similarity=0.081 Sum_probs=50.5
Q ss_pred HHHHHHHHHHhcCC-CeEEEEEcCCC--------CCCC--CCCCcEEEecCCCccccccCCCceEEeccCCcccHHHHHH
Q psy14941 308 DKFKAFLKAFSKIP-QRVLWKFEDND--------TSIF--KPYKNIRTSSWMPQRDIFAHPNMKLFISHGGLLGITEAVY 376 (513)
Q Consensus 308 ~~~~~~~~~~~~~~-~~~i~~~~~~~--------~~~~--~~~~nv~~~~~~pq~~lL~h~~~~~~IthgG~~s~~Eal~ 376 (513)
...+.+.++.+..| .+++++..+.+ .... . ...+.+.+-.+-.+|+ .+++.+||-.+ ++-.||+.
T Consensus 141 ~~~~~l~~~~~~~p~~~lvvK~HP~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~Ll--~~s~~VvtinS-tvGlEAll 216 (269)
T PF05159_consen 141 DFLDMLESFAKENPDAKLVVKPHPDERGGNKYSYLEELPNL-PNVVIIDDDVNLYELL--EQSDAVVTINS-TVGLEALL 216 (269)
T ss_pred HHHHHHHHHHHHCCCCEEEEEECchhhCCCChhHhhhhhcC-CCeEEECCCCCHHHHH--HhCCEEEEECC-HHHHHHHH
Confidence 44555555555665 47888776522 1110 2 3345556677778999 78899999876 57799999
Q ss_pred cCcceEeec
Q psy14941 377 EGIPVLGIP 385 (513)
Q Consensus 377 ~GvP~i~~P 385 (513)
+|+|++++.
T Consensus 217 ~gkpVi~~G 225 (269)
T PF05159_consen 217 HGKPVIVFG 225 (269)
T ss_pred cCCceEEec
Confidence 999999973
No 154
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=84.33 E-value=11 Score=35.04 Aligned_cols=37 Identities=24% Similarity=0.352 Sum_probs=29.2
Q ss_pred cCCCccccccCCCceEEeccCC-cccHHHHHHcCcceEee
Q psy14941 346 SWMPQRDIFAHPNMKLFISHGG-LLGITEAVYEGIPVLGI 384 (513)
Q Consensus 346 ~~~pq~~lL~h~~~~~~IthgG-~~s~~Eal~~GvP~i~~ 384 (513)
++=|+.++| ..+|.+|.-.. .|...||.+.|+|+.+.
T Consensus 234 g~NPY~~~L--a~Adyii~TaDSinM~sEAasTgkPv~~~ 271 (329)
T COG3660 234 GYNPYIDML--AAADYIISTADSINMCSEAASTGKPVFIL 271 (329)
T ss_pred CCCchHHHH--hhcceEEEecchhhhhHHHhccCCCeEEE
Confidence 344888999 77788776655 57789999999999775
No 155
>COG4370 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.82 E-value=7.3 Score=36.83 Aligned_cols=93 Identities=26% Similarity=0.368 Sum_probs=57.8
Q ss_pred ecCCCccccccCCCceEEeccCC--------------ccc-HHHHHHcCcceEeeccccCcHH--HHHHHHH-cCcEEEe
Q psy14941 345 SSWMPQRDIFAHPNMKLFISHGG--------------LLG-ITEAVYEGIPVLGIPVFGDQWA--NIKKLES-LKAGKLL 406 (513)
Q Consensus 345 ~~~~pq~~lL~h~~~~~~IthgG--------------~~s-~~Eal~~GvP~i~~P~~~DQ~~--na~~~~~-~G~G~~l 406 (513)
.+|-|..|.++..+|.+..+.-- .|| +-.++-.|||+|.+|-.+-|+. .|.+-.+ .|+.+.+
T Consensus 282 ~gWq~~ad~~~kdnc~l~lsqqsfadiLH~adaalgmAGTAtEQavGLGkPvi~fPg~GPQy~pgFA~rQ~rLLG~sltl 361 (412)
T COG4370 282 QGWQPLADRFGKDNCSLWLSQQSFADILHAADAALGMAGTATEQAVGLGKPVIGFPGQGPQYNPGFAERQQRLLGASLTL 361 (412)
T ss_pred cCcchhhhhhccCceEEEEeHHHHHHHHHHHHHHHHhccchHHHhhccCCceeecCCCCCCcChHHHHHHHHHhcceeee
Confidence 45666666665555555554322 223 3345678999999999998864 4555444 6888887
Q ss_pred ccCCCCHHHHHHHHHHhc-CHHHHHHHHHHHHHH
Q psy14941 407 PYLEITEETVSDALKIVL-SPEYKENAEDLGTRF 439 (513)
Q Consensus 407 ~~~~~~~~~l~~ai~~ll-~~~y~~~a~~~~~~~ 439 (513)
-.+ ....-..+..+++ |+.+.+..+.-...=
T Consensus 362 v~~--~aq~a~~~~q~ll~dp~r~~air~nGqrR 393 (412)
T COG4370 362 VRP--EAQAAAQAVQELLGDPQRLTAIRHNGQRR 393 (412)
T ss_pred cCC--chhhHHHHHHHHhcChHHHHHHHhcchhh
Confidence 532 2333333444588 999999888655443
No 156
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=82.93 E-value=7 Score=38.04 Aligned_cols=128 Identities=9% Similarity=0.106 Sum_probs=78.5
Q ss_pred CCceEEEEeCcccccCCCCHHHHHHHHHHHhcCCCeEEEEEcCC-C------CCCCCCCCcEEEec--CCCcc-ccccCC
Q psy14941 288 HNGVIYFSMGSMLKTSSFPPDKFKAFLKAFSKIPQRVLWKFEDN-D------TSIFKPYKNIRTSS--WMPQR-DIFAHP 357 (513)
Q Consensus 288 ~~~~v~vs~Gs~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~------~~~~~~~~nv~~~~--~~pq~-~lL~h~ 357 (513)
+++.|.+..|+.......|.+...++++.+.+.+.++++..++. + ..+ . -++..+.+ -++|. .++ .
T Consensus 178 ~~~~i~i~~gas~~~K~wp~e~~~~l~~~l~~~~~~~vl~~g~~~e~~~~~~i~~-~-~~~~~l~g~~sL~el~ali--~ 253 (319)
T TIGR02193 178 PAPYAVLLHATSRDDKTWPEERWRELARLLLARGLQIVLPWGNDAEKQRAERIAE-A-LPGAVVLPKMSLAEVAALL--A 253 (319)
T ss_pred CCCEEEEEeCCCcccCCCCHHHHHHHHHHHHHCCCeEEEeCCCHHHHHHHHHHHh-h-CCCCeecCCCCHHHHHHHH--H
Confidence 46778788887666677888899999998876566766654432 1 111 1 12223333 23333 667 7
Q ss_pred CceEEeccCCcccHHHHHHcCcceEeeccccCcHHHHHHHHHcCcE--EEe--ccCCCCHHHHHHHHHHhc
Q psy14941 358 NMKLFISHGGLLGITEAVYEGIPVLGIPVFGDQWANIKKLESLKAG--KLL--PYLEITEETVSDALKIVL 424 (513)
Q Consensus 358 ~~~~~IthgG~~s~~Eal~~GvP~i~~P~~~DQ~~na~~~~~~G~G--~~l--~~~~~~~~~l~~ai~~ll 424 (513)
+|+++|+.=. |.+.=|.+.|+|.|++ ++ +.+..+.-=.|-. +.. ...+++.+++.++++++|
T Consensus 254 ~a~l~I~~DS-gp~HlAaa~g~P~i~l--fg--~t~p~~~~P~~~~~~~~~~~~~~~I~~~~V~~ai~~~~ 319 (319)
T TIGR02193 254 GADAVVGVDT-GLTHLAAALDKPTVTL--YG--ATDPGRTGGYGKPNVALLGESGANPTPDEVLAALEELL 319 (319)
T ss_pred cCCEEEeCCC-hHHHHHHHcCCCEEEE--EC--CCCHhhcccCCCCceEEccCccCCCCHHHHHHHHHhhC
Confidence 8999999754 7788888999999997 11 0111111001111 111 245789999999998875
No 157
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=82.05 E-value=2.7 Score=26.72 Aligned_cols=27 Identities=15% Similarity=-0.068 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHhhccccccccCC
Q psy14941 487 LIVGLVSVCFVLKYLCGSLVRRKHKTE 513 (513)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~k~~ 513 (513)
+.+...+.+.++..+....+++|.|.|
T Consensus 15 l~If~~iGl~IyQkikqIrgKkk~KKe 41 (49)
T PF11044_consen 15 LGIFAWIGLSIYQKIKQIRGKKKEKKE 41 (49)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 333344445555566777777776653
No 158
>KOG0853|consensus
Probab=82.00 E-value=1.1 Score=45.67 Aligned_cols=64 Identities=20% Similarity=0.174 Sum_probs=48.6
Q ss_pred ccHHHHHHcCcceEeeccccCcHHHHHHHHHcCcEEEeccCCCCHHHHHHHHHHhc-CHHHHHHHHHHH
Q psy14941 369 LGITEAVYEGIPVLGIPVFGDQWANIKKLESLKAGKLLPYLEITEETVSDALKIVL-SPEYKENAEDLG 436 (513)
Q Consensus 369 ~s~~Eal~~GvP~i~~P~~~DQ~~na~~~~~~G~G~~l~~~~~~~~~l~~ai~~ll-~~~y~~~a~~~~ 436 (513)
-++.||+++|+|+++. ++-+=+..++..--|...++..-....+.+++.++. |++++.++.+-+
T Consensus 380 iv~IEAMa~glPvvAt----~~GGP~EiV~~~~tG~l~dp~~e~~~~~a~~~~kl~~~p~l~~~~~~~G 444 (495)
T KOG0853|consen 380 IVPIEAMACGLPVVAT----NNGGPAEIVVHGVTGLLIDPGQEAVAELADALLKLRRDPELWARMGKNG 444 (495)
T ss_pred ceeHHHHhcCCCEEEe----cCCCceEEEEcCCcceeeCCchHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 5789999999999998 444455556666678888863223337999999999 999988877644
No 159
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=79.47 E-value=32 Score=33.51 Aligned_cols=80 Identities=19% Similarity=0.136 Sum_probs=61.0
Q ss_pred CCcEEE-ecCCCc---cccccCCCceEEecc----CCcccHHHHHHcCcceEeeccccCcHHHHHHHHHcCcEEEeccCC
Q psy14941 339 YKNIRT-SSWMPQ---RDIFAHPNMKLFISH----GGLLGITEAVYEGIPVLGIPVFGDQWANIKKLESLKAGKLLPYLE 410 (513)
Q Consensus 339 ~~nv~~-~~~~pq---~~lL~h~~~~~~Ith----gG~~s~~Eal~~GvP~i~~P~~~DQ~~na~~~~~~G~G~~l~~~~ 410 (513)
.+|+.+ .+++|- ..+| .+|++.|.. =|.|++.-.++.|+|++.- .+..--+.+.+.|+-+....++
T Consensus 244 ~~~~~iL~e~mpf~eYl~lL--~~cDl~if~~~RQQgiGnI~lLl~~G~~v~L~----~~np~~~~l~~~~ipVlf~~d~ 317 (360)
T PF07429_consen 244 AENFQILTEFMPFDEYLALL--SRCDLGIFNHNRQQGIGNICLLLQLGKKVFLS----RDNPFWQDLKEQGIPVLFYGDE 317 (360)
T ss_pred ccceeEhhhhCCHHHHHHHH--HhCCEEEEeechhhhHhHHHHHHHcCCeEEEe----cCChHHHHHHhCCCeEEecccc
Confidence 357754 567774 4777 677776654 4789999999999999886 3344456677788888877789
Q ss_pred CCHHHHHHHHHHhc
Q psy14941 411 ITEETVSDALKIVL 424 (513)
Q Consensus 411 ~~~~~l~~ai~~ll 424 (513)
++...+.++=+++.
T Consensus 318 L~~~~v~ea~rql~ 331 (360)
T PF07429_consen 318 LDEALVREAQRQLA 331 (360)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999888876
No 160
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=78.90 E-value=26 Score=38.60 Aligned_cols=96 Identities=18% Similarity=0.166 Sum_probs=58.2
Q ss_pred EEEecCCCcccccc-CCCceEEeccC---Cc-ccHHHHHHcCcceEeeccccCcHHHHHHHHHcCcEEEeccCCCCHHHH
Q psy14941 342 IRTSSWMPQRDIFA-HPNMKLFISHG---GL-LGITEAVYEGIPVLGIPVFGDQWANIKKLESLKAGKLLPYLEITEETV 416 (513)
Q Consensus 342 v~~~~~~pq~~lL~-h~~~~~~Ithg---G~-~s~~Eal~~GvP~i~~P~~~DQ~~na~~~~~~G~G~~l~~~~~~~~~l 416 (513)
+.+.+.+++.++.+ ...+|+|+.-. |+ .+..||+++|+|-.+.|+..+--.-+..+ .-|+.+++ -+.+++
T Consensus 344 ~~~~~~~~~~~l~~ly~~aDv~v~~S~~EG~~lv~~Eama~~~~~~g~~vls~~~G~~~~l---~~~llv~P--~d~~~l 418 (726)
T PRK14501 344 HYFYRSLPFEELVALYRAADVALVTPLRDGMNLVAKEYVASRTDGDGVLILSEMAGAAAEL---AEALLVNP--NDIEGI 418 (726)
T ss_pred EEEeCCCCHHHHHHHHHhccEEEecccccccCcccceEEEEcCCCCceEEEecccchhHHh---CcCeEECC--CCHHHH
Confidence 34566788775432 27788888653 43 57899999977532222222211111111 23777774 478999
Q ss_pred HHHHHHhc-C--HHHHHHHHHHHHHHhcC
Q psy14941 417 SDALKIVL-S--PEYKENAEDLGTRFRDR 442 (513)
Q Consensus 417 ~~ai~~ll-~--~~y~~~a~~~~~~~~~~ 442 (513)
.++|.+++ + ++.+++.+++.+.+...
T Consensus 419 a~ai~~~l~~~~~e~~~r~~~~~~~v~~~ 447 (726)
T PRK14501 419 AAAIKRALEMPEEEQRERMQAMQERLRRY 447 (726)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhC
Confidence 99999998 4 35666666666665433
No 161
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=78.09 E-value=5.4 Score=37.45 Aligned_cols=81 Identities=11% Similarity=0.158 Sum_probs=48.5
Q ss_pred HHHHHHHHHhCCCcEEEEEeecCCccccCCe--EEEEecCcccchhhHHHHHhhchhHHHHHHHHHHHHHHHHHHHhCCH
Q psy14941 44 FDTILVELYQRGHDLTVITQYPETLVHYERM--KVLDIKGTHTYNSTIEDIYELSADSIKRIHINFIDQEIQVENIFLHE 121 (513)
Q Consensus 44 ~~~la~~L~~rGH~Vt~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (513)
-..++++|.++||+|+..+............ ..+... .+...
T Consensus 12 gr~la~~L~~~g~~v~~s~~t~~~~~~~~~~g~~~v~~g------------------------------------~l~~~ 55 (256)
T TIGR00715 12 SRAIAKGLIAQGIEILVTVTTSEGKHLYPIHQALTVHTG------------------------------------ALDPQ 55 (256)
T ss_pred HHHHHHHHHhCCCeEEEEEccCCccccccccCCceEEEC------------------------------------CCCHH
Confidence 7889999999999998877655432201111 011110 01123
Q ss_pred hHHHHhccCCCccEEEEccchhc------hHHhhhhccCCCEEEEeC
Q psy14941 122 NMKSIWNMENKYDLIITEMFLTD------AFLVIPYLYKVPYISIAS 162 (513)
Q Consensus 122 ~l~~~l~~~~~~Dlvi~d~~~~~------~~~~~a~~l~iP~i~~~~ 162 (513)
.+.+.++ +.++|+||--.+ +. ....+|+.+|||++-+..
T Consensus 56 ~l~~~l~-~~~i~~VIDAtH-PfA~~is~~a~~a~~~~~ipylR~eR 100 (256)
T TIGR00715 56 ELREFLK-RHSIDILVDATH-PFAAQITTNATAVCKELGIPYVRFER 100 (256)
T ss_pred HHHHHHH-hcCCCEEEEcCC-HHHHHHHHHHHHHHHHhCCcEEEEEC
Confidence 3556666 678997775443 22 233578899999998864
No 162
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=77.37 E-value=17 Score=38.14 Aligned_cols=71 Identities=10% Similarity=0.022 Sum_probs=44.4
Q ss_pred ccccccCCCceEEecc---CC-cccHHHHHHcCcceEeecccc-CcHHHHHHHHHc--CcEEEeccCC-----CCHHHHH
Q psy14941 350 QRDIFAHPNMKLFISH---GG-LLGITEAVYEGIPVLGIPVFG-DQWANIKKLESL--KAGKLLPYLE-----ITEETVS 417 (513)
Q Consensus 350 q~~lL~h~~~~~~Ith---gG-~~s~~Eal~~GvP~i~~P~~~-DQ~~na~~~~~~--G~G~~l~~~~-----~~~~~l~ 417 (513)
..+++ ..|++|+.- =| ..+..||+++|+|+|+....+ ....+ .+... ..|+.+...+ -+.++|.
T Consensus 468 y~E~~--~g~dl~v~PS~yE~fG~~~lEAma~G~PvI~t~~~gf~~~v~--E~v~~~~~~gi~V~~r~~~~~~e~v~~La 543 (590)
T cd03793 468 YEEFV--RGCHLGVFPSYYEPWGYTPAECTVMGIPSITTNLSGFGCFME--EHIEDPESYGIYIVDRRFKSPDESVQQLT 543 (590)
T ss_pred hHHHh--hhceEEEeccccCCCCcHHHHHHHcCCCEEEccCcchhhhhH--HHhccCCCceEEEecCCccchHHHHHHHH
Confidence 34556 788999882 33 468999999999999986633 11111 12222 2576664221 2456777
Q ss_pred HHHHHhc
Q psy14941 418 DALKIVL 424 (513)
Q Consensus 418 ~ai~~ll 424 (513)
++|.+++
T Consensus 544 ~~m~~~~ 550 (590)
T cd03793 544 QYMYEFC 550 (590)
T ss_pred HHHHHHh
Confidence 7777777
No 163
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=76.94 E-value=2.3 Score=40.11 Aligned_cols=51 Identities=18% Similarity=0.159 Sum_probs=37.7
Q ss_pred CceEEeccCCcccHHHHHH------cCcceEeeccccCcHHHHHHHHHcCcEEEeccCCCCHHHHHHHHHHhc
Q psy14941 358 NMKLFISHGGLLGITEAVY------EGIPVLGIPVFGDQWANIKKLESLKAGKLLPYLEITEETVSDALKIVL 424 (513)
Q Consensus 358 ~~~~~IthgG~~s~~Eal~------~GvP~i~~P~~~DQ~~na~~~~~~G~G~~l~~~~~~~~~l~~ai~~ll 424 (513)
+++++|+-||-||++.|+. .++|++++-.. .+|-.- +.+.+++.+++++++
T Consensus 35 ~~Dlvi~iGGDGT~L~a~~~~~~~~~~iPilGIN~G-------------~lGFL~---~~~~~~~~~~l~~i~ 91 (265)
T PRK04885 35 NPDIVISVGGDGTLLSAFHRYENQLDKVRFVGVHTG-------------HLGFYT---DWRPFEVDKLVIALA 91 (265)
T ss_pred CCCEEEEECCcHHHHHHHHHhcccCCCCeEEEEeCC-------------Cceecc---cCCHHHHHHHHHHHH
Confidence 4699999999999999986 48899998431 123222 456777888888887
No 164
>KOG1111|consensus
Probab=73.47 E-value=97 Score=30.46 Aligned_cols=76 Identities=17% Similarity=0.220 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHhcCCC-eEEEEEcCCC---CCC-----CCCCCcEEEecCCCcc---ccccCCCceEEeccCC----ccc
Q psy14941 307 PDKFKAFLKAFSKIPQ-RVLWKFEDND---TSI-----FKPYKNIRTSSWMPQR---DIFAHPNMKLFISHGG----LLG 370 (513)
Q Consensus 307 ~~~~~~~~~~~~~~~~-~~i~~~~~~~---~~~-----~~~~~nv~~~~~~pq~---~lL~h~~~~~~IthgG----~~s 370 (513)
....+.+-..+.+.|. +|+..-++.. +++ ++ .+.|.+.+-+|++ ++| .+-++|++-.= .-.
T Consensus 211 Dll~~iIp~vc~~~p~vrfii~GDGPk~i~lee~lEk~~l-~~rV~~lG~v~h~~Vr~vl--~~G~IFlntSlTEafc~~ 287 (426)
T KOG1111|consen 211 DLLLEIIPSVCDKHPEVRFIIIGDGPKRIDLEEMLEKLFL-QDRVVMLGTVPHDRVRDVL--VRGDIFLNTSLTEAFCMV 287 (426)
T ss_pred HHHHHHHHHHHhcCCCeeEEEecCCcccchHHHHHHHhhc-cCceEEecccchHHHHHHH--hcCcEEeccHHHHHHHHH
Confidence 3344445555666776 8887655432 111 35 7899999999876 566 45566665321 135
Q ss_pred HHHHHHcCcceEeec
Q psy14941 371 ITEAVYEGIPVLGIP 385 (513)
Q Consensus 371 ~~Eal~~GvP~i~~P 385 (513)
+.||+.+|.|++..-
T Consensus 288 ivEAaScGL~VVsTr 302 (426)
T KOG1111|consen 288 IVEAASCGLPVVSTR 302 (426)
T ss_pred HHHHHhCCCEEEEee
Confidence 789999999999863
No 165
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=71.07 E-value=4 Score=39.15 Aligned_cols=94 Identities=15% Similarity=0.214 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHhcCCCeEEEEEcCCCCCCCCCCCcEEEecCCCccccccCCCceEEeccCCcccHHHHHHc----CcceE
Q psy14941 307 PDKFKAFLKAFSKIPQRVLWKFEDNDTSIFKPYKNIRTSSWMPQRDIFAHPNMKLFISHGGLLGITEAVYE----GIPVL 382 (513)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~nv~~~~~~pq~~lL~h~~~~~~IthgG~~s~~Eal~~----GvP~i 382 (513)
.+.++.+.+.+++.+..+.+........+ ..+.. -.+..++- ..++++|+-||-||+++|+.. ++|++
T Consensus 20 ~e~~~~i~~~L~~~g~~v~v~~~~~~~~~---~~~~~---~~~~~~~~--~~~d~vi~~GGDGt~l~~~~~~~~~~~pil 91 (291)
T PRK02155 20 AEPLESLAAFLAKRGFEVVFEADTARNIG---LTGYP---ALTPEEIG--ARADLAVVLGGDGTMLGIGRQLAPYGVPLI 91 (291)
T ss_pred HHHHHHHHHHHHHCCCEEEEecchhhhcC---ccccc---ccChhHhc--cCCCEEEEECCcHHHHHHHHHhcCCCCCEE
Confidence 45567777777776766665322111000 00000 01212322 357999999999999999773 77988
Q ss_pred eeccccCcHHHHHHHHHcCcEEEeccCCCCHHHHHHHHHHhc
Q psy14941 383 GIPVFGDQWANIKKLESLKAGKLLPYLEITEETVSDALKIVL 424 (513)
Q Consensus 383 ~~P~~~DQ~~na~~~~~~G~G~~l~~~~~~~~~l~~ai~~ll 424 (513)
++-.. .+|... +.+.+++.++|.+++
T Consensus 92 GIn~G-------------~lGFL~---~~~~~~~~~~l~~~~ 117 (291)
T PRK02155 92 GINHG-------------RLGFIT---DIPLDDMQETLPPML 117 (291)
T ss_pred EEcCC-------------Cccccc---cCCHHHHHHHHHHHH
Confidence 88421 123222 467788889998888
No 166
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=70.98 E-value=15 Score=35.10 Aligned_cols=41 Identities=10% Similarity=0.180 Sum_probs=33.5
Q ss_pred CceEeEEcCCCCCChHHHHHHHHHHHHhC-C-CcEEEEEeecC
Q psy14941 26 CSKILAIFPTPAKSHQIIFDTILVELYQR-G-HDLTVITQYPE 66 (513)
Q Consensus 26 ~~kIL~~~p~~~~gH~~~~~~la~~L~~r-G-H~Vt~~~~~~~ 66 (513)
..++++++...|.|=..-...||..++.+ | ++|.+++.++.
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~ 235 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTY 235 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCcc
Confidence 45566677777889999999999999987 6 99999997654
No 167
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=70.13 E-value=3.8 Score=39.53 Aligned_cols=52 Identities=33% Similarity=0.380 Sum_probs=39.6
Q ss_pred CCceEEeccCCcccHHHHHHc----CcceEeeccccCcHHHHHHHHHcCcEEEeccCCCCHHHHHHHHHHhc
Q psy14941 357 PNMKLFISHGGLLGITEAVYE----GIPVLGIPVFGDQWANIKKLESLKAGKLLPYLEITEETVSDALKIVL 424 (513)
Q Consensus 357 ~~~~~~IthgG~~s~~Eal~~----GvP~i~~P~~~DQ~~na~~~~~~G~G~~l~~~~~~~~~l~~ai~~ll 424 (513)
..++++|+=||-||++.|... ++|++++-.. .+|-. .+++.+++.+++++++
T Consensus 67 ~~~Dlvi~iGGDGTlL~aar~~~~~~iPilGIN~G-------------~lGFL---t~~~~~~~~~~l~~l~ 122 (305)
T PRK02649 67 SSMKFAIVLGGDGTVLSAARQLAPCGIPLLTINTG-------------HLGFL---TEAYLNQLDEAIDQVL 122 (305)
T ss_pred cCcCEEEEEeCcHHHHHHHHHhcCCCCcEEEEeCC-------------CCccc---ccCCHHHHHHHHHHHH
Confidence 468999999999999999774 7899998421 13322 2456788999999998
No 168
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=69.44 E-value=7.8 Score=33.95 Aligned_cols=38 Identities=32% Similarity=0.385 Sum_probs=25.6
Q ss_pred ceEeEEcCCCCCChHHHHHHHHHHHHhCCCcEEEEEeecCCcc
Q psy14941 27 SKILAIFPTPAKSHQIIFDTILVELYQRGHDLTVITQYPETLV 69 (513)
Q Consensus 27 ~kIL~~~p~~~~gH~~~~~~la~~L~~rGH~Vt~~~~~~~~~~ 69 (513)
+||-++-.+ |+. -..++++..+|||+||-++-.+.+..
T Consensus 1 mKIaiIgAs---G~~--Gs~i~~EA~~RGHeVTAivRn~~K~~ 38 (211)
T COG2910 1 MKIAIIGAS---GKA--GSRILKEALKRGHEVTAIVRNASKLA 38 (211)
T ss_pred CeEEEEecC---chh--HHHHHHHHHhCCCeeEEEEeChHhcc
Confidence 366645443 332 34688999999999998887665443
No 169
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=68.15 E-value=18 Score=34.81 Aligned_cols=52 Identities=31% Similarity=0.331 Sum_probs=39.6
Q ss_pred CCceEEeccCCcccHHHHHH----cCcceEeeccccCcHHHHHHHHHcCcEEEeccCCCCHHHHHHHHHHhc
Q psy14941 357 PNMKLFISHGGLLGITEAVY----EGIPVLGIPVFGDQWANIKKLESLKAGKLLPYLEITEETVSDALKIVL 424 (513)
Q Consensus 357 ~~~~~~IthgG~~s~~Eal~----~GvP~i~~P~~~DQ~~na~~~~~~G~G~~l~~~~~~~~~l~~ai~~ll 424 (513)
..++++|+=||-||+++++. .++|++++... .+|.. .+.+.+++.++|.+++
T Consensus 61 ~~~d~vi~~GGDGt~l~~~~~~~~~~~Pvlgin~G-------------~lGFl---~~~~~~~~~~~l~~~~ 116 (295)
T PRK01231 61 EVCDLVIVVGGDGSLLGAARALARHNVPVLGINRG-------------RLGFL---TDIRPDELEFKLAEVL 116 (295)
T ss_pred cCCCEEEEEeCcHHHHHHHHHhcCCCCCEEEEeCC-------------ccccc---ccCCHHHHHHHHHHHH
Confidence 35799999999999999975 37799988542 13322 2567889999999998
No 170
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=68.06 E-value=11 Score=33.38 Aligned_cols=36 Identities=19% Similarity=0.208 Sum_probs=22.6
Q ss_pred HHHHHHHHHHhCCCcEEEEEeecCCccccCCeEEEEe
Q psy14941 43 IFDTILVELYQRGHDLTVITQYPETLVHYERMKVLDI 79 (513)
Q Consensus 43 ~~~~la~~L~~rGH~Vt~~~~~~~~~~~~~~~~~i~~ 79 (513)
.-..||+++..|||+|+++..+..-.. +.++..+.+
T Consensus 31 ~G~~lA~~~~~~Ga~V~li~g~~~~~~-p~~~~~i~v 66 (185)
T PF04127_consen 31 MGAALAEEAARRGAEVTLIHGPSSLPP-PPGVKVIRV 66 (185)
T ss_dssp HHHHHHHHHHHTT-EEEEEE-TTS-----TTEEEEE-
T ss_pred HHHHHHHHHHHCCCEEEEEecCccccc-cccceEEEe
Confidence 456899999999999999998642222 445666554
No 171
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=68.01 E-value=5.9 Score=32.10 Aligned_cols=35 Identities=17% Similarity=0.235 Sum_probs=30.6
Q ss_pred eEeEEcCCCCCChHHHHHHHHHHHHhCCCcEEEEEe
Q psy14941 28 KILAIFPTPAKSHQIIFDTILVELYQRGHDLTVITQ 63 (513)
Q Consensus 28 kIL~~~p~~~~gH~~~~~~la~~L~~rGH~Vt~~~~ 63 (513)
||| +.+.++..|.....-++..|.++|++|.++..
T Consensus 1 ~vl-~~~~~~e~H~lG~~~~~~~l~~~G~~V~~lg~ 35 (119)
T cd02067 1 KVV-IATVGGDGHDIGKNIVARALRDAGFEVIDLGV 35 (119)
T ss_pred CEE-EEeeCCchhhHHHHHHHHHHHHCCCEEEECCC
Confidence 566 67778999999999999999999999987764
No 172
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=67.90 E-value=74 Score=27.05 Aligned_cols=137 Identities=11% Similarity=0.141 Sum_probs=69.1
Q ss_pred ceEEEEeCcccccCCCCHHHHHHHHHHHhcCCCeEEEEEcCCCCCCCCCCCcEEEecCCCccccccCCCceEEeccCCcc
Q psy14941 290 GVIYFSMGSMLKTSSFPPDKFKAFLKAFSKIPQRVLWKFEDNDTSIFKPYKNIRTSSWMPQRDIFAHPNMKLFISHGGLL 369 (513)
Q Consensus 290 ~~v~vs~Gs~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~nv~~~~~~pq~~lL~h~~~~~~IthgG~~ 369 (513)
|.|.+-+||.. .....+++...+++++..+-..+-.... . |+.+ ..++ +-+.+..+++||+=.|..
T Consensus 1 p~V~Ii~gs~S-----D~~~~~~a~~~L~~~gi~~~~~V~saHR---~-p~~l--~~~~---~~~~~~~~~viIa~AG~~ 66 (150)
T PF00731_consen 1 PKVAIIMGSTS-----DLPIAEEAAKTLEEFGIPYEVRVASAHR---T-PERL--LEFV---KEYEARGADVIIAVAGMS 66 (150)
T ss_dssp -EEEEEESSGG-----GHHHHHHHHHHHHHTT-EEEEEE--TTT---S-HHHH--HHHH---HHTTTTTESEEEEEEESS
T ss_pred CeEEEEeCCHH-----HHHHHHHHHHHHHHcCCCEEEEEEeccC---C-HHHH--HHHH---HHhccCCCEEEEEECCCc
Confidence 45667778876 6678889999999887644333332110 1 1000 0111 112234678999988864
Q ss_pred cHHHH---HHcCcceEeeccccCcHH----HHHHHHH-cCcEEEeccCCCCHHHHHHHHHHhc---CHHHHHHHHHHHHH
Q psy14941 370 GITEA---VYEGIPVLGIPVFGDQWA----NIKKLES-LKAGKLLPYLEITEETVSDALKIVL---SPEYKENAEDLGTR 438 (513)
Q Consensus 370 s~~Ea---l~~GvP~i~~P~~~DQ~~----na~~~~~-~G~G~~l~~~~~~~~~l~~ai~~ll---~~~y~~~a~~~~~~ 438 (513)
.-+-+ -..-.|+|++|...++.. ....++. .|+++..-.-+ +.+.-.-..-++| |++.+++.+...+.
T Consensus 67 a~Lpgvva~~t~~PVIgvP~~~~~~~g~d~l~S~vqMp~g~pvatv~i~-~~~nAA~~A~~ILa~~d~~l~~kl~~~~~~ 145 (150)
T PF00731_consen 67 AALPGVVASLTTLPVIGVPVSSGYLGGLDSLLSIVQMPSGVPVATVGIN-NGFNAALLAARILALKDPELREKLRAYREK 145 (150)
T ss_dssp --HHHHHHHHSSS-EEEEEE-STTTTTHHHHHHHHT--TTS--EE-SST-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred ccchhhheeccCCCEEEeecCcccccCcccHHHHHhccCCCCceEEEcc-CchHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 33322 234799999998765432 2223332 47765432111 2222222233444 78888888888877
Q ss_pred Hhc
Q psy14941 439 FRD 441 (513)
Q Consensus 439 ~~~ 441 (513)
.++
T Consensus 146 ~~~ 148 (150)
T PF00731_consen 146 MKE 148 (150)
T ss_dssp HHH
T ss_pred HHc
Confidence 653
No 173
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=67.80 E-value=4.9 Score=38.53 Aligned_cols=52 Identities=25% Similarity=0.376 Sum_probs=39.6
Q ss_pred CCceEEeccCCcccHHHHHH----cCcceEeeccccCcHHHHHHHHHcCcEEEeccCCCCHHHHHHHHHHhc
Q psy14941 357 PNMKLFISHGGLLGITEAVY----EGIPVLGIPVFGDQWANIKKLESLKAGKLLPYLEITEETVSDALKIVL 424 (513)
Q Consensus 357 ~~~~~~IthgG~~s~~Eal~----~GvP~i~~P~~~DQ~~na~~~~~~G~G~~l~~~~~~~~~l~~ai~~ll 424 (513)
..++++|+=||-||++.|+. .++|++++-... +|.. .+++.+++.+++++++
T Consensus 63 ~~~dlvi~lGGDGT~L~aa~~~~~~~~PilGIN~G~-------------lGFL---t~~~~~~~~~~l~~i~ 118 (292)
T PRK01911 63 GSADMVISIGGDGTFLRTATYVGNSNIPILGINTGR-------------LGFL---ATVSKEEIEETIDELL 118 (292)
T ss_pred cCCCEEEEECCcHHHHHHHHHhcCCCCCEEEEecCC-------------CCcc---cccCHHHHHHHHHHHH
Confidence 35899999999999999887 378999884311 3322 2457888999999998
No 174
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=67.05 E-value=9.4 Score=35.45 Aligned_cols=93 Identities=13% Similarity=0.160 Sum_probs=58.3
Q ss_pred CCceEEEEeCcccccCCCCHHHHHHHHHHHhcCCCeEEEEEcCCC--------CCCCCCC-CcEEEecCCC--c-ccccc
Q psy14941 288 HNGVIYFSMGSMLKTSSFPPDKFKAFLKAFSKIPQRVLWKFEDND--------TSIFKPY-KNIRTSSWMP--Q-RDIFA 355 (513)
Q Consensus 288 ~~~~v~vs~Gs~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--------~~~~~~~-~nv~~~~~~p--q-~~lL~ 355 (513)
+++.|.+..|+.......+.+...++++.+.+.+.+++...++++ ..+.. + +.+.+.+-.+ | ..++
T Consensus 104 ~~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~~~vvl~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~e~~ali- 181 (247)
T PF01075_consen 104 DKPYIGINPGASWPSKRWPAEKWAELIERLKERGYRVVLLGGPEEQEKEIADQIAAGL-QNPVINLAGKTSLRELAALI- 181 (247)
T ss_dssp TSSEEEEE---SSGGGS--HHHHHHHHHHHCCCT-EEEE--SSHHHHHHHHHHHHTTH-TTTTEEETTTS-HHHHHHHH-
T ss_pred cCCeEEEeecCCCccccCCHHHHHHHHHHHHhhCceEEEEccchHHHHHHHHHHHHhc-ccceEeecCCCCHHHHHHHH-
Confidence 578899999988877788999999999999887777766655533 11101 2 2344444332 3 2666
Q ss_pred CCCceEEeccCCcccHHHHHHcCcceEee
Q psy14941 356 HPNMKLFISHGGLLGITEAVYEGIPVLGI 384 (513)
Q Consensus 356 h~~~~~~IthgG~~s~~Eal~~GvP~i~~ 384 (513)
.+++++|+.-+ |.+.=|.+.|+|+|++
T Consensus 182 -~~a~~~I~~Dt-g~~HlA~a~~~p~v~l 208 (247)
T PF01075_consen 182 -SRADLVIGNDT-GPMHLAAALGTPTVAL 208 (247)
T ss_dssp -HTSSEEEEESS-HHHHHHHHTT--EEEE
T ss_pred -hcCCEEEecCC-hHHHHHHHHhCCEEEE
Confidence 78899999865 7788899999999998
No 175
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=65.96 E-value=45 Score=32.95 Aligned_cols=94 Identities=13% Similarity=0.124 Sum_probs=64.0
Q ss_pred CCceEEEEeCcccccCCCCHHHHHHHHHHHhcCCCeEEEEEcCCC--CC---CC---CC-CCcEEEecC--CCcc-cccc
Q psy14941 288 HNGVIYFSMGSMLKTSSFPPDKFKAFLKAFSKIPQRVLWKFEDND--TS---IF---KP-YKNIRTSSW--MPQR-DIFA 355 (513)
Q Consensus 288 ~~~~v~vs~Gs~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~---~~---~~-~~nv~~~~~--~pq~-~lL~ 355 (513)
+++.|.+..|+.......+.+.+.++++.+.+.+.++++..++++ .. ++ .. ++.+.+.+- +.+. .++
T Consensus 182 ~~~~i~i~pga~~~~K~Wp~e~fa~l~~~L~~~~~~vvl~ggp~e~e~~~~~~i~~~~~~~~~~~l~g~~sL~el~ali- 260 (352)
T PRK10422 182 TQNYVVIQPTARQIFKCWDNDKFSAVIDALQARGYEVVLTSGPDKDDLACVNEIAQGCQTPPVTALAGKTTFPELGALI- 260 (352)
T ss_pred CCCeEEEecCCCccccCCCHHHHHHHHHHHHHCCCeEEEEcCCChHHHHHHHHHHHhcCCCccccccCCCCHHHHHHHH-
Confidence 457888898987766778889999999998776778777655422 11 10 00 122233333 2332 666
Q ss_pred CCCceEEeccCCcccHHHHHHcCcceEee
Q psy14941 356 HPNMKLFISHGGLLGITEAVYEGIPVLGI 384 (513)
Q Consensus 356 h~~~~~~IthgG~~s~~Eal~~GvP~i~~ 384 (513)
.++++||+.=. |-+.=|.+.|+|.|++
T Consensus 261 -~~a~l~v~nDS-Gp~HlAaA~g~P~v~l 287 (352)
T PRK10422 261 -DHAQLFIGVDS-APAHIAAAVNTPLICL 287 (352)
T ss_pred -HhCCEEEecCC-HHHHHHHHcCCCEEEE
Confidence 77999999754 7788888999999987
No 176
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=65.21 E-value=24 Score=33.14 Aligned_cols=81 Identities=21% Similarity=0.127 Sum_probs=53.2
Q ss_pred CHHHHHHHHHHHhcCCCeEEEEEcCCCCCCCCCCCcEEEecCCCccccccCCCceEEeccCCcccHHHHHH-cCcceEee
Q psy14941 306 PPDKFKAFLKAFSKIPQRVLWKFEDNDTSIFKPYKNIRTSSWMPQRDIFAHPNMKLFISHGGLLGITEAVY-EGIPVLGI 384 (513)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~nv~~~~~~pq~~lL~h~~~~~~IthgG~~s~~Eal~-~GvP~i~~ 384 (513)
..+..+.+.+-+.+.+..+.|..... . . - ..++++|+=||-||++.|+. .++|++++
T Consensus 11 ~~~~~~~~~~~l~~~~~~~~~~~~~~---~--------------~---~--~~~d~vi~iGGDGT~L~a~~~~~~Pilgi 68 (256)
T PRK14075 11 KEKEAKFLKEKISKEHEVVEFCEASA---S--------------G---K--VTADLIIVVGGDGTVLKAAKKVGTPLVGF 68 (256)
T ss_pred HHHHHHHHHHHHHHcCCeeEeecccc---c--------------c---c--CCCCEEEEECCcHHHHHHHHHcCCCEEEE
Confidence 45566677777766665556542211 0 0 1 46799999999999999876 58888887
Q ss_pred ccccCcHHHHHHHHHcCcEEEeccCCCCHHHHHHHHHHhc
Q psy14941 385 PVFGDQWANIKKLESLKAGKLLPYLEITEETVSDALKIVL 424 (513)
Q Consensus 385 P~~~DQ~~na~~~~~~G~G~~l~~~~~~~~~l~~ai~~ll 424 (513)
-... +|... +.+.+++.+++.+++
T Consensus 69 n~G~-------------lGfl~---~~~~~~~~~~l~~~~ 92 (256)
T PRK14075 69 KAGR-------------LGFLS---SYTLEEIDRFLEDLK 92 (256)
T ss_pred eCCC-------------Ccccc---ccCHHHHHHHHHHHH
Confidence 4211 33332 456788888888887
No 177
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=64.57 E-value=24 Score=33.65 Aligned_cols=45 Identities=20% Similarity=0.398 Sum_probs=38.9
Q ss_pred hccCceEeEEcCCCCCChHHHHHHHHHHHHhCCCcEEEEEeecCC
Q psy14941 23 IQQCSKILAIFPTPAKSHQIIFDTILVELYQRGHDLTVITQYPET 67 (513)
Q Consensus 23 ~~~~~kIL~~~p~~~~gH~~~~~~la~~L~~rGH~Vt~~~~~~~~ 67 (513)
.+-.+.++.+...||.|--.-.-.|.++|.++||.|-++..++..
T Consensus 47 ~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSS 91 (323)
T COG1703 47 RTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSS 91 (323)
T ss_pred cCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCC
Confidence 445566777999999999999999999999999999999987653
No 178
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=63.36 E-value=9.2 Score=36.56 Aligned_cols=52 Identities=23% Similarity=0.175 Sum_probs=38.4
Q ss_pred CCceEEeccCCcccHHHHHH----cCcceEeeccccCcHHHHHHHHHcCcEEEeccCCCCHHHHHHHHHHhc
Q psy14941 357 PNMKLFISHGGLLGITEAVY----EGIPVLGIPVFGDQWANIKKLESLKAGKLLPYLEITEETVSDALKIVL 424 (513)
Q Consensus 357 ~~~~~~IthgG~~s~~Eal~----~GvP~i~~P~~~DQ~~na~~~~~~G~G~~l~~~~~~~~~l~~ai~~ll 424 (513)
..++++|+-||-||++.|+. .++|++++-... +|-. .+++.+++.+++++++
T Consensus 63 ~~~Dlvi~iGGDGT~L~aa~~~~~~~~PilGIN~G~-------------lGFL---t~~~~~~~~~~l~~i~ 118 (287)
T PRK14077 63 KISDFLISLGGDGTLISLCRKAAEYDKFVLGIHAGH-------------LGFL---TDITVDEAEKFFQAFF 118 (287)
T ss_pred cCCCEEEEECCCHHHHHHHHHhcCCCCcEEEEeCCC-------------cccC---CcCCHHHHHHHHHHHH
Confidence 46899999999999998765 478998884211 2322 2457788888888888
No 179
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=63.08 E-value=99 Score=26.60 Aligned_cols=99 Identities=16% Similarity=0.085 Sum_probs=54.1
Q ss_pred cHHHHHHhhcCCCceEEEEeCcccccCCCCHHHHHHHHHHHhcCCCeEEEEEcCCC-CCCCCCCCcEEEecC-CCccccc
Q psy14941 277 NEEMERFLNESHNGVIYFSMGSMLKTSSFPPDKFKAFLKAFSKIPQRVLWKFEDND-TSIFKPYKNIRTSSW-MPQRDIF 354 (513)
Q Consensus 277 ~~~l~~~l~~~~~~~v~vs~Gs~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~nv~~~~~-~pq~~lL 354 (513)
-.++-+++.+ ++..+++ |... .......++..+.+-+++=.++... ..+-. .+.....++ .+.+.++
T Consensus 20 A~~lg~~La~--~g~~lv~-Gg~~-------GlM~a~a~ga~~~gg~viGVlp~~l~~~~~~-~~~~i~~~~~~~Rk~~m 88 (159)
T TIGR00725 20 AYRLGKELAK--KGHILIN-GGRT-------GVMEAVSKGAREAGGLVVGILPDEDFAGNPY-LTIKVKTGMNFARNFIL 88 (159)
T ss_pred HHHHHHHHHH--CCCEEEc-CCch-------hHHHHHHHHHHHCCCeEEEECChhhccCCCC-ceEEEECCCcchHHHHH
Confidence 3455566664 4567777 5432 3556666665555555544444322 11101 222233444 4555666
Q ss_pred cCCCceEEeccCCcccH---HHHHHcCcceEeecc
Q psy14941 355 AHPNMKLFISHGGLLGI---TEAVYEGIPVLGIPV 386 (513)
Q Consensus 355 ~h~~~~~~IthgG~~s~---~Eal~~GvP~i~~P~ 386 (513)
....-..++--||.||+ .|++.+++|+++++.
T Consensus 89 ~~~sda~IvlpGG~GTL~E~~~a~~~~kpv~~l~~ 123 (159)
T TIGR00725 89 VRSADVVVSVGGGYGTAIEILGAYALGGPVVVLRG 123 (159)
T ss_pred HHHCCEEEEcCCchhHHHHHHHHHHcCCCEEEEEC
Confidence 53333445556777775 556889999999875
No 180
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=62.46 E-value=7.7 Score=37.44 Aligned_cols=52 Identities=29% Similarity=0.371 Sum_probs=40.2
Q ss_pred CCceEEeccCCcccHHHHHHc----CcceEeeccccCcHHHHHHHHHcCcEEEeccCCCCHHHHHHHHHHhc
Q psy14941 357 PNMKLFISHGGLLGITEAVYE----GIPVLGIPVFGDQWANIKKLESLKAGKLLPYLEITEETVSDALKIVL 424 (513)
Q Consensus 357 ~~~~~~IthgG~~s~~Eal~~----GvP~i~~P~~~DQ~~na~~~~~~G~G~~l~~~~~~~~~l~~ai~~ll 424 (513)
..++++|+=||-||++.|... ++|++++... .+|... +.+.+++.+++.+++
T Consensus 71 ~~~D~vi~lGGDGT~L~aar~~~~~~~PilGIN~G-------------~lGFL~---~~~~~~~~~~l~~i~ 126 (306)
T PRK03372 71 DGCELVLVLGGDGTILRAAELARAADVPVLGVNLG-------------HVGFLA---EAEAEDLDEAVERVV 126 (306)
T ss_pred cCCCEEEEEcCCHHHHHHHHHhccCCCcEEEEecC-------------CCceec---cCCHHHHHHHHHHHH
Confidence 468999999999999998764 8899998542 134433 456788999999998
No 181
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=61.53 E-value=2.1e+02 Score=29.81 Aligned_cols=154 Identities=12% Similarity=0.054 Sum_probs=95.9
Q ss_pred CCceEEEEeCcccccCCCCHHHHHHHHHHHhcCCC-----eEEEEEcCC--CCC-----------------------CCC
Q psy14941 288 HNGVIYFSMGSMLKTSSFPPDKFKAFLKAFSKIPQ-----RVLWKFEDN--DTS-----------------------IFK 337 (513)
Q Consensus 288 ~~~~v~vs~Gs~~~~~~~~~~~~~~~~~~~~~~~~-----~~i~~~~~~--~~~-----------------------~~~ 337 (513)
+...|+++.|-.-.. +.-...+.++-..+++.|. .++.+..+. +.+ + .
T Consensus 283 ~~~kiIl~VDRLDy~-KGI~~kl~Afe~~L~~~Pe~~gkv~Lvqi~~psr~~v~~y~~l~~~v~~~v~~IN~~fg~~~-~ 360 (487)
T TIGR02398 283 AGVKLILSAERVDYT-KGILEKLNAYERLLERRPELLGKVTLVTACVPAASGMTIYDELQGQIEQAVGRINGRFARIG-W 360 (487)
T ss_pred CCceEEEEecccccc-cCHHHHHHHHHHHHHhCccccCceEEEEEeCCCcccchHHHHHHHHHHHHHHHHhhccCCCC-C
Confidence 345677888877643 3334566666666777774 233333221 100 1 1
Q ss_pred CCCcEEEecCCCcccccc-CCCceEEecc---CCcccH-HHHHHcCc----ceEeeccccCcHHHHHHHHHcCcEEEecc
Q psy14941 338 PYKNIRTSSWMPQRDIFA-HPNMKLFISH---GGLLGI-TEAVYEGI----PVLGIPVFGDQWANIKKLESLKAGKLLPY 408 (513)
Q Consensus 338 ~~~nv~~~~~~pq~~lL~-h~~~~~~Ith---gG~~s~-~Eal~~Gv----P~i~~P~~~DQ~~na~~~~~~G~G~~l~~ 408 (513)
.+-+.+...+|+.++.+ ...+|+++.- -|+|-+ .|.++++. |+|.--+.| | .+...-++.++
T Consensus 361 -~pv~~~~~~v~~~el~alYr~ADV~lvT~lrDGmNLVa~Eyva~~~~~~GvLILSefaG-----a--a~~l~~AllVN- 431 (487)
T TIGR02398 361 -TPLQFFTRSLPYEEVSAWFAMADVMWITPLRDGLNLVAKEYVAAQGLLDGVLVLSEFAG-----A--AVELKGALLTN- 431 (487)
T ss_pred -ccEEEEcCCCCHHHHHHHHHhCCEEEECccccccCcchhhHHhhhcCCCCCEEEecccc-----c--hhhcCCCEEEC-
Confidence 23456777888876553 3667777654 488754 69999988 665554332 2 24445578887
Q ss_pred CCCCHHHHHHHHHHhc-C--HHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q psy14941 409 LEITEETVSDALKIVL-S--PEYKENAEDLGTRFRDRPQSPLEVAIYWIEYVIK 459 (513)
Q Consensus 409 ~~~~~~~l~~ai~~ll-~--~~y~~~a~~~~~~~~~~~~~~~~~a~~~ie~~~~ 459 (513)
..+.+++.++|.+.| . .+-+++++++.+.++.. .+.+|.+..+.
T Consensus 432 -P~d~~~~A~ai~~AL~m~~~Er~~R~~~l~~~v~~~------d~~~W~~~fl~ 478 (487)
T TIGR02398 432 -PYDPVRMDETIYVALAMPKAEQQARMREMFDAVNYY------DVQRWADEFLA 478 (487)
T ss_pred -CCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhC------CHHHHHHHHHH
Confidence 458999999999999 3 45677777777776554 34677777664
No 182
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=61.19 E-value=1.2e+02 Score=29.15 Aligned_cols=80 Identities=15% Similarity=0.092 Sum_probs=54.8
Q ss_pred CCcEEE-ecCCC---ccccccCCCceEEecc----CCcccHHHHHHcCcceEeeccccCcHHHHHHHHHcCcEEEeccCC
Q psy14941 339 YKNIRT-SSWMP---QRDIFAHPNMKLFISH----GGLLGITEAVYEGIPVLGIPVFGDQWANIKKLESLKAGKLLPYLE 410 (513)
Q Consensus 339 ~~nv~~-~~~~p---q~~lL~h~~~~~~Ith----gG~~s~~Eal~~GvP~i~~P~~~DQ~~na~~~~~~G~G~~l~~~~ 410 (513)
++|+.+ .+++| +.++| .+||+.|.. =|.|++.-.++.|+|+++-.. ..--+-+.+.|+-+..+.++
T Consensus 205 ~~~~~~L~e~l~f~eYl~lL--~~~Dl~~f~~~RQQgiGnl~lLi~~G~~v~l~r~----n~fwqdl~e~gv~Vlf~~d~ 278 (322)
T PRK02797 205 AENFQILTEKLPFDDYLALL--RQCDLGYFIFARQQGIGTLCLLIQLGKPVVLSRD----NPFWQDLTEQGLPVLFTGDD 278 (322)
T ss_pred cccEEehhhhCCHHHHHHHH--HhCCEEEEeechhhHHhHHHHHHHCCCcEEEecC----CchHHHHHhCCCeEEecCCc
Confidence 356664 44666 45788 667766554 378999999999999998621 11122356678888777788
Q ss_pred CCHHHHHHHHHHhc
Q psy14941 411 ITEETVSDALKIVL 424 (513)
Q Consensus 411 ~~~~~l~~ai~~ll 424 (513)
++...+.++=+++.
T Consensus 279 L~~~~v~e~~rql~ 292 (322)
T PRK02797 279 LDEDIVREAQRQLA 292 (322)
T ss_pred ccHHHHHHHHHHHH
Confidence 98888887755543
No 183
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=61.08 E-value=13 Score=34.63 Aligned_cols=28 Identities=21% Similarity=0.255 Sum_probs=22.9
Q ss_pred CChHHHHHHHHHHHHhCCCcEEEEEeec
Q psy14941 38 KSHQIIFDTILVELYQRGHDLTVITQYP 65 (513)
Q Consensus 38 ~gH~~~~~~la~~L~~rGH~Vt~~~~~~ 65 (513)
.|=-..+..|+++|+++||+|++++|..
T Consensus 16 GGLgdv~~~L~kaL~~~G~~V~Vi~P~y 43 (245)
T PF08323_consen 16 GGLGDVVGSLPKALAKQGHDVRVIMPKY 43 (245)
T ss_dssp SHHHHHHHHHHHHHHHTT-EEEEEEE-T
T ss_pred CcHhHHHHHHHHHHHhcCCeEEEEEccc
Confidence 3667788999999999999999999943
No 184
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=61.01 E-value=8.9 Score=34.24 Aligned_cols=40 Identities=15% Similarity=0.117 Sum_probs=30.4
Q ss_pred cCceEeEEcCCCCCChHHH-HHHHHHHHHhCCCcEEEEEeecC
Q psy14941 25 QCSKILAIFPTPAKSHQII-FDTILVELYQRGHDLTVITQYPE 66 (513)
Q Consensus 25 ~~~kIL~~~p~~~~gH~~~-~~~la~~L~~rGH~Vt~~~~~~~ 66 (513)
.+.||++.++ |.+...- ...++++|.++||+|.++.+...
T Consensus 4 ~~k~IllgVT--Gsiaa~k~a~~lir~L~k~G~~V~vv~T~aA 44 (196)
T PRK08305 4 KGKRIGFGLT--GSHCTYDEVMPEIEKLVDEGAEVTPIVSYTV 44 (196)
T ss_pred CCCEEEEEEc--CHHHHHHHHHHHHHHHHhCcCEEEEEECHhH
Confidence 4567873333 4567777 69999999999999999887543
No 185
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=60.53 E-value=43 Score=30.43 Aligned_cols=38 Identities=13% Similarity=0.198 Sum_probs=31.7
Q ss_pred eEEcCCCCCChHHHHHHHHHHHHhCCCcEEEEEeecCC
Q psy14941 30 LAIFPTPAKSHQIIFDTILVELYQRGHDLTVITQYPET 67 (513)
Q Consensus 30 L~~~p~~~~gH~~~~~~la~~L~~rGH~Vt~~~~~~~~ 67 (513)
+++...++.|=......+|..++++|++|.++..++..
T Consensus 2 ~~~~g~~g~Gkt~~~~~la~~~a~~g~~~~l~~~d~~~ 39 (217)
T cd02035 2 IFFTGKGGVGKTTIAAATAVRLAEEGKKVLLVSTDPAH 39 (217)
T ss_pred EEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEECCCCc
Confidence 44667777888888999999999999999999876544
No 186
>PLN02929 NADH kinase
Probab=59.76 E-value=45 Score=32.07 Aligned_cols=96 Identities=20% Similarity=0.221 Sum_probs=60.1
Q ss_pred CCHHHHHHHHHHHhcCCCeEEEEEcCCCCCCCCCCCcEEEecCCCccccccCCCceEEeccCCcccHHHHHH---cCcce
Q psy14941 305 FPPDKFKAFLKAFSKIPQRVLWKFEDNDTSIFKPYKNIRTSSWMPQRDIFAHPNMKLFISHGGLLGITEAVY---EGIPV 381 (513)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~nv~~~~~~pq~~lL~h~~~~~~IthgG~~s~~Eal~---~GvP~ 381 (513)
..++..+.+.+.+++.+..+... ...++. +.. ..++++|+-||-||++.|.. .++|+
T Consensus 31 ~h~~~~~~~~~~L~~~gi~~~~v-~r~~~~-----------------~~~--~~~Dlvi~lGGDGT~L~aa~~~~~~iPv 90 (301)
T PLN02929 31 VHKDTVNFCKDILQQKSVDWECV-LRNELS-----------------QPI--RDVDLVVAVGGDGTLLQASHFLDDSIPV 90 (301)
T ss_pred hhHHHHHHHHHHHHHcCCEEEEe-eccccc-----------------ccc--CCCCEEEEECCcHHHHHHHHHcCCCCcE
Confidence 45667777888887766655222 111111 112 56799999999999999855 47899
Q ss_pred Eeecccc------CcHHHHHHHHHcCcEEEeccCCCCHHHHHHHHHHhc
Q psy14941 382 LGIPVFG------DQWANIKKLESLKAGKLLPYLEITEETVSDALKIVL 424 (513)
Q Consensus 382 i~~P~~~------DQ~~na~~~~~~G~G~~l~~~~~~~~~l~~ai~~ll 424 (513)
+++=... .+..|... +.+-.|.... .+.+++.+++.+++
T Consensus 91 lGIN~Gp~~~~~~~~~~~~~~-~~r~lGfL~~---~~~~~~~~~L~~il 135 (301)
T PLN02929 91 LGVNSDPTQKDEVEEYSDEFD-ARRSTGHLCA---ATAEDFEQVLDDVL 135 (301)
T ss_pred EEEECCCcccccccccccccc-cccCcccccc---CCHHHHHHHHHHHH
Confidence 9985431 12333311 2233555543 46888999999999
No 187
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=58.83 E-value=12 Score=35.89 Aligned_cols=52 Identities=27% Similarity=0.311 Sum_probs=40.1
Q ss_pred CCceEEeccCCcccHHHHHH----cCcceEeeccccCcHHHHHHHHHcCcEEEeccCCCCHHHHHHHHHHhc
Q psy14941 357 PNMKLFISHGGLLGITEAVY----EGIPVLGIPVFGDQWANIKKLESLKAGKLLPYLEITEETVSDALKIVL 424 (513)
Q Consensus 357 ~~~~~~IthgG~~s~~Eal~----~GvP~i~~P~~~DQ~~na~~~~~~G~G~~l~~~~~~~~~l~~ai~~ll 424 (513)
..++++|+=||-||++.|.. .++|++++-.. .+|... +++.+++.+++.+++
T Consensus 67 ~~~D~vi~lGGDGT~L~aa~~~~~~~~PilGIN~G-------------~lGFL~---~~~~~~~~~~l~~i~ 122 (296)
T PRK04539 67 QYCDLVAVLGGDGTFLSVAREIAPRAVPIIGINQG-------------HLGFLT---QIPREYMTDKLLPVL 122 (296)
T ss_pred cCCCEEEEECCcHHHHHHHHHhcccCCCEEEEecC-------------CCeEee---ccCHHHHHHHHHHHH
Confidence 35899999999999999975 37899998421 144443 457888999999998
No 188
>PF12038 DUF3524: Domain of unknown function (DUF3524); InterPro: IPR022701 This domain is functionally uncharacterised and is found in bacteria and eukaryotes. It is about 170 amino acids in length and is found associated with PF00534 from PFAM. Two conserved sequence motifs are found within this entry: HENQ and FNS. There is also a single completely conserved residue S that may be functionally important.
Probab=58.23 E-value=21 Score=30.82 Aligned_cols=36 Identities=25% Similarity=0.267 Sum_probs=31.9
Q ss_pred ceEeEEcCCCCCChHHHHHHHHHHHHhCCCcEEEEEeec
Q psy14941 27 SKILAIFPTPAKSHQIIFDTILVELYQRGHDLTVITQYP 65 (513)
Q Consensus 27 ~kIL~~~p~~~~gH~~~~~~la~~L~~rGH~Vt~~~~~~ 65 (513)
.|||++-|+-+.||-.....+++.+ -|+++++|-++
T Consensus 1 M~ILlle~y~ggSHk~~~~~L~~~~---~~~~~lltLP~ 36 (168)
T PF12038_consen 1 MRILLLEPYYGGSHKQWADGLAAHS---EHEWTLLTLPA 36 (168)
T ss_pred CeEEEEccccccCHHHHHHHHHHhc---cCCEEEEEcCC
Confidence 4899999999999999999999998 58999998754
No 189
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=58.12 E-value=11 Score=38.79 Aligned_cols=52 Identities=23% Similarity=0.233 Sum_probs=39.4
Q ss_pred CCceEEeccCCcccHHHHHHc----CcceEeeccccCcHHHHHHHHHcCcEEEeccCCCCHHHHHHHHHHhc
Q psy14941 357 PNMKLFISHGGLLGITEAVYE----GIPVLGIPVFGDQWANIKKLESLKAGKLLPYLEITEETVSDALKIVL 424 (513)
Q Consensus 357 ~~~~~~IthgG~~s~~Eal~~----GvP~i~~P~~~DQ~~na~~~~~~G~G~~l~~~~~~~~~l~~ai~~ll 424 (513)
..++++|+=||-||++.|... ++|++++-.. .+|-. .+++.+++.++|.+++
T Consensus 261 ~~~DlVIsiGGDGTlL~Aar~~~~~~iPILGIN~G-------------~LGFL---t~i~~~e~~~~Le~il 316 (508)
T PLN02935 261 TKVDLVITLGGDGTVLWAASMFKGPVPPVVPFSMG-------------SLGFM---TPFHSEQYRDCLDAIL 316 (508)
T ss_pred cCCCEEEEECCcHHHHHHHHHhccCCCcEEEEeCC-------------Cccee---cccCHHHHHHHHHHHH
Confidence 468999999999999999774 5788877211 13443 2567889999999998
No 190
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=57.55 E-value=41 Score=32.68 Aligned_cols=127 Identities=13% Similarity=0.155 Sum_probs=71.3
Q ss_pred CceEEEEeCcccccCCCCHHHHHHHHHHHhcCCCeEEEEEcCC-C------CCCCCCCCcEEEecC--CCcc-ccccCCC
Q psy14941 289 NGVIYFSMGSMLKTSSFPPDKFKAFLKAFSKIPQRVLWKFEDN-D------TSIFKPYKNIRTSSW--MPQR-DIFAHPN 358 (513)
Q Consensus 289 ~~~v~vs~Gs~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~------~~~~~~~~nv~~~~~--~pq~-~lL~h~~ 358 (513)
++.|.+..|+.......|.+.+.++++.+.+.+.++++..++. + +.+ . .+++.+.+- +.|. .++ .+
T Consensus 178 ~~~i~~~~~~s~~~k~Wp~e~~a~li~~l~~~~~~ivl~~G~~~e~~~~~~i~~-~-~~~~~l~g~~sL~elaali--~~ 253 (322)
T PRK10964 178 GPYLVFLHATTRDDKHWPEAHWRELIGLLAPSGLRIKLPWGAEHEEQRAKRLAE-G-FPYVEVLPKLSLEQVARVL--AG 253 (322)
T ss_pred CCeEEEEeCCCcccccCCHHHHHHHHHHHHHCCCeEEEeCCCHHHHHHHHHHHc-c-CCcceecCCCCHHHHHHHH--Hh
Confidence 4555444454433356777788888887765555655543331 1 111 1 223333332 3333 566 78
Q ss_pred ceEEeccCCcccHHHHHHcCcceEee--cccc----CcHHHHHHHHHcCcEEEeccCCCCHHHHHHHHHHhc
Q psy14941 359 MKLFISHGGLLGITEAVYEGIPVLGI--PVFG----DQWANIKKLESLKAGKLLPYLEITEETVSDALKIVL 424 (513)
Q Consensus 359 ~~~~IthgG~~s~~Eal~~GvP~i~~--P~~~----DQ~~na~~~~~~G~G~~l~~~~~~~~~l~~ai~~ll 424 (513)
++++|+.-. |.+.=|.+.|+|.+++ |... -...|...+.. .+.+ ..+++.|++.+++++++
T Consensus 254 a~l~I~nDS-Gp~HlA~A~g~p~valfGpt~p~~~~p~~~~~~~~~~--~~~c--m~~I~~e~V~~~~~~~l 320 (322)
T PRK10964 254 AKAVVSVDT-GLSHLTAALDRPNITLYGPTDPGLIGGYGKNQHACRS--PGKS--MADLSAETVFQKLETLI 320 (322)
T ss_pred CCEEEecCC-cHHHHHHHhCCCEEEEECCCCcccccCCCCCceeecC--CCcc--cccCCHHHHHHHHHHHh
Confidence 999999865 7888899999999997 3211 11111111110 0112 34778888888888765
No 191
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=57.34 E-value=73 Score=31.25 Aligned_cols=94 Identities=16% Similarity=0.198 Sum_probs=63.4
Q ss_pred CCceEEEEeCcccccCCCCHHHHHHHHHHHhcCCCeEEEEEcCC--CC------CCCCCCCcE-EEecC--CCcc-cccc
Q psy14941 288 HNGVIYFSMGSMLKTSSFPPDKFKAFLKAFSKIPQRVLWKFEDN--DT------SIFKPYKNI-RTSSW--MPQR-DIFA 355 (513)
Q Consensus 288 ~~~~v~vs~Gs~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~------~~~~~~~nv-~~~~~--~pq~-~lL~ 355 (513)
+++.|.+..|+.......+.+...++++.+.+.+.++++..+++ +. .+..+.+++ .+.+- ++|. .++
T Consensus 180 ~~~~i~i~p~a~~~~K~Wp~e~~~~l~~~l~~~~~~ivl~g~p~~~e~~~~~~i~~~~~~~~~~~l~g~~sL~el~ali- 258 (344)
T TIGR02201 180 GQNYIVIQPTSRWFFKCWDNDRFSALIDALHARGYEVVLTSGPDKDELAMVNEIAQGCQTPRVTSLAGKLTLPQLAALI- 258 (344)
T ss_pred CCCEEEEeCCCCccccCCCHHHHHHHHHHHHhCCCeEEEecCCCHHHHHHHHHHHhhCCCCcccccCCCCCHHHHHHHH-
Confidence 45788888888766667888999999988876667777765432 11 110101122 23332 2333 666
Q ss_pred CCCceEEeccCCcccHHHHHHcCcceEee
Q psy14941 356 HPNMKLFISHGGLLGITEAVYEGIPVLGI 384 (513)
Q Consensus 356 h~~~~~~IthgG~~s~~Eal~~GvP~i~~ 384 (513)
.+++++|+. .-|.+.=|.+.|+|.|++
T Consensus 259 -~~a~l~Vs~-DSGp~HlAaA~g~p~v~L 285 (344)
T TIGR02201 259 -DHARLFIGV-DSVPMHMAAALGTPLVAL 285 (344)
T ss_pred -HhCCEEEec-CCHHHHHHHHcCCCEEEE
Confidence 789999998 458888899999999997
No 192
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=56.90 E-value=14 Score=35.49 Aligned_cols=52 Identities=27% Similarity=0.249 Sum_probs=38.8
Q ss_pred CCceEEeccCCcccHHHHHH----cCcceEeeccccCcHHHHHHHHHcCcEEEeccCCCCHHHHHHHHHHhc
Q psy14941 357 PNMKLFISHGGLLGITEAVY----EGIPVLGIPVFGDQWANIKKLESLKAGKLLPYLEITEETVSDALKIVL 424 (513)
Q Consensus 357 ~~~~~~IthgG~~s~~Eal~----~GvP~i~~P~~~DQ~~na~~~~~~G~G~~l~~~~~~~~~l~~ai~~ll 424 (513)
..++++|+=||-||++.|+. .++|++++-... +|..- +++.+++.+++++++
T Consensus 62 ~~~d~vi~lGGDGT~L~aa~~~~~~~~Pilgin~G~-------------lGFl~---~~~~~~~~~~l~~i~ 117 (292)
T PRK03378 62 QQADLAIVVGGDGNMLGAARVLARYDIKVIGINRGN-------------LGFLT---DLDPDNALQQLSDVL 117 (292)
T ss_pred CCCCEEEEECCcHHHHHHHHHhcCCCCeEEEEECCC-------------CCccc---ccCHHHHHHHHHHHH
Confidence 36899999999999999975 378888874311 23322 456788999999998
No 193
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=56.78 E-value=60 Score=33.39 Aligned_cols=35 Identities=11% Similarity=0.089 Sum_probs=27.0
Q ss_pred EeEEcCCCCCChHHHHHHHHHHHHhCCCcEEEEEe
Q psy14941 29 ILAIFPTPAKSHQIIFDTILVELYQRGHDLTVITQ 63 (513)
Q Consensus 29 IL~~~p~~~~gH~~~~~~la~~L~~rGH~Vt~~~~ 63 (513)
|++.-+..+-|=...+..|++.|+++|++|..+=+
T Consensus 2 ~~I~gT~t~vGKT~vt~~L~~~L~~~G~~V~~fK~ 36 (449)
T TIGR00379 2 VVIAGTSSGVGKTTISTGIMKALSRRKLRVQPFKV 36 (449)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCceeEEcc
Confidence 44233444567889999999999999999998865
No 194
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=56.70 E-value=14 Score=34.84 Aligned_cols=52 Identities=17% Similarity=0.234 Sum_probs=38.6
Q ss_pred CceEEeccCCcccHHHHHHc-----CcceEeeccccCcHHHHHHHHHcCcEEEeccCCCCHHHHHHHHHHhc
Q psy14941 358 NMKLFISHGGLLGITEAVYE-----GIPVLGIPVFGDQWANIKKLESLKAGKLLPYLEITEETVSDALKIVL 424 (513)
Q Consensus 358 ~~~~~IthgG~~s~~Eal~~-----GvP~i~~P~~~DQ~~na~~~~~~G~G~~l~~~~~~~~~l~~ai~~ll 424 (513)
.++++|+=||-||++.|+.. .+|++++-..| .+|.. .+.+.+++.+++.+++
T Consensus 39 ~~D~vi~lGGDGT~L~a~~~~~~~~~~pilgIn~~G------------~lGFL---~~~~~~~~~~~l~~i~ 95 (264)
T PRK03501 39 NANIIVSIGGDGTFLQAVRKTGFREDCLYAGISTKD------------QLGFY---CDFHIDDLDKMIQAIT 95 (264)
T ss_pred CccEEEEECCcHHHHHHHHHhcccCCCeEEeEecCC------------CCeEc---ccCCHHHHHHHHHHHH
Confidence 46899999999999999874 67877774411 23433 2457788899998888
No 195
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=56.45 E-value=19 Score=32.28 Aligned_cols=38 Identities=21% Similarity=0.259 Sum_probs=26.4
Q ss_pred eEeEEcCCCCCChHHHHHHHHHHHHhCCCcEEEEEeecCC
Q psy14941 28 KILAIFPTPAKSHQIIFDTILVELYQRGHDLTVITQYPET 67 (513)
Q Consensus 28 kIL~~~p~~~~gH~~~~~~la~~L~~rGH~Vt~~~~~~~~ 67 (513)
||| +.---|. +---+..|+++|.+.||+|+++.|...+
T Consensus 2 ~IL-lTNDDGi-~a~Gi~aL~~~L~~~g~~V~VvAP~~~~ 39 (196)
T PF01975_consen 2 RIL-LTNDDGI-DAPGIRALAKALSALGHDVVVVAPDSEQ 39 (196)
T ss_dssp EEE-EE-SS-T-TSHHHHHHHHHHTTTSSEEEEEEESSST
T ss_pred eEE-EEcCCCC-CCHHHHHHHHHHHhcCCeEEEEeCCCCC
Confidence 566 4443332 4456788999998888999999997654
No 196
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=55.88 E-value=46 Score=37.03 Aligned_cols=80 Identities=19% Similarity=0.120 Sum_probs=53.8
Q ss_pred ccccCCCceEEeccC---Ccc-cHHHHHHcCcc---eEeec-cccCcHHHHHHHHHcC-cEEEeccCCCCHHHHHHHHHH
Q psy14941 352 DIFAHPNMKLFISHG---GLL-GITEAVYEGIP---VLGIP-VFGDQWANIKKLESLK-AGKLLPYLEITEETVSDALKI 422 (513)
Q Consensus 352 ~lL~h~~~~~~Ithg---G~~-s~~Eal~~GvP---~i~~P-~~~DQ~~na~~~~~~G-~G~~l~~~~~~~~~l~~ai~~ 422 (513)
.++ ..+++|+.-. |+| +..|++++|.| +++++ +.| .+.. .| -|+.+++ .+.+++.++|.+
T Consensus 371 aly--~~ADvfvvtSlrEGmnLv~lEamA~g~p~~gvlVlSe~~G----~~~~---l~~~allVnP--~D~~~lA~AI~~ 439 (797)
T PLN03063 371 ALY--AITDVMLVTSLRDGMNLVSYEFVACQKAKKGVLVLSEFAG----AGQS---LGAGALLVNP--WNITEVSSAIKE 439 (797)
T ss_pred HHH--HhCCEEEeCccccccCcchhhHheeecCCCCCEEeeCCcC----chhh---hcCCeEEECC--CCHHHHHHHHHH
Confidence 445 7788888654 665 67899999999 44443 332 1111 24 5788874 478999999999
Q ss_pred hc--CH-HHHHHHHHHHHHHhcC
Q psy14941 423 VL--SP-EYKENAEDLGTRFRDR 442 (513)
Q Consensus 423 ll--~~-~y~~~a~~~~~~~~~~ 442 (513)
++ ++ +.+++.+++.+.....
T Consensus 440 aL~m~~~er~~r~~~~~~~v~~~ 462 (797)
T PLN03063 440 ALNMSDEERETRHRHNFQYVKTH 462 (797)
T ss_pred HHhCCHHHHHHHHHHHHHhhhhC
Confidence 98 43 4556666677766655
No 197
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=54.89 E-value=11 Score=35.68 Aligned_cols=57 Identities=25% Similarity=0.288 Sum_probs=39.5
Q ss_pred CCceEEeccCCcccHHHHHH----cCcceEeeccccCcHHHHHHHHHcCcEEEeccCCCCHHHHHHHHHHhc-CHHHH
Q psy14941 357 PNMKLFISHGGLLGITEAVY----EGIPVLGIPVFGDQWANIKKLESLKAGKLLPYLEITEETVSDALKIVL-SPEYK 429 (513)
Q Consensus 357 ~~~~~~IthgG~~s~~Eal~----~GvP~i~~P~~~DQ~~na~~~~~~G~G~~l~~~~~~~~~l~~ai~~ll-~~~y~ 429 (513)
..++++|+=||-||++.|+. .++|++++-.. .+|... +.+.+++.+++.+++ +.+|+
T Consensus 41 ~~~d~vi~iGGDGT~L~aa~~~~~~~~PilgIn~G-------------~lGFL~---~~~~~~~~~~l~~~~~~g~~~ 102 (272)
T PRK02231 41 QRAQLAIVIGGDGNMLGRARVLAKYDIPLIGINRG-------------NLGFLT---DIDPKNAYEQLEACLERGEFF 102 (272)
T ss_pred cCCCEEEEECCcHHHHHHHHHhccCCCcEEEEeCC-------------CCcccc---cCCHHHHHHHHHHHHhcCCce
Confidence 35799999999999998755 37899888431 134333 346677777777777 45543
No 198
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=54.65 E-value=44 Score=32.63 Aligned_cols=93 Identities=13% Similarity=0.175 Sum_probs=61.9
Q ss_pred CCceEEEEeCcc-cccCCCCHHHHHHHHHHHhcCCCeEEEEEcCCCCC------CCCCCCcEE-Eec--CCCcc-ccccC
Q psy14941 288 HNGVIYFSMGSM-LKTSSFPPDKFKAFLKAFSKIPQRVLWKFEDNDTS------IFKPYKNIR-TSS--WMPQR-DIFAH 356 (513)
Q Consensus 288 ~~~~v~vs~Gs~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~------~~~~~~nv~-~~~--~~pq~-~lL~h 356 (513)
+++.|.+..|+. ......+.+...++++.+.+.+.+++...++++.+ +.. ++++. +.+ -+.+. .++
T Consensus 173 ~~~~i~i~pga~~~~~K~Wp~e~~~~li~~l~~~~~~ivl~G~~~e~~~~~~i~~~~-~~~~~~l~g~~sL~el~ali-- 249 (334)
T TIGR02195 173 ERPIIAFCPGAEFGPAKRWPHEHYAELAKRLIDQGYQVVLFGSAKDHPAGNEIEALL-PGELRNLAGETSLDEAVDLI-- 249 (334)
T ss_pred CCCEEEEcCCCCCCccCCCCHHHHHHHHHHHHHCCCEEEEEEChhhHHHHHHHHHhC-CcccccCCCCCCHHHHHHHH--
Confidence 467888888885 35567888999999998876566766654443311 101 22322 222 22232 666
Q ss_pred CCceEEeccCCcccHHHHHHcCcceEee
Q psy14941 357 PNMKLFISHGGLLGITEAVYEGIPVLGI 384 (513)
Q Consensus 357 ~~~~~~IthgG~~s~~Eal~~GvP~i~~ 384 (513)
.+++++|+.=. |-+.=|.+.|+|+|++
T Consensus 250 ~~a~l~I~~DS-Gp~HlAaA~~~P~i~l 276 (334)
T TIGR02195 250 ALAKAVVTNDS-GLMHVAAALNRPLVAL 276 (334)
T ss_pred HhCCEEEeeCC-HHHHHHHHcCCCEEEE
Confidence 78999999754 7788889999999986
No 199
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=54.42 E-value=16 Score=29.80 Aligned_cols=18 Identities=0% Similarity=-0.132 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHhhcccc
Q psy14941 490 GLVSVCFVLKYLCGSLVR 507 (513)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~ 507 (513)
++.++++++++++|..+|
T Consensus 77 vIg~Illi~y~irR~~Kk 94 (122)
T PF01102_consen 77 VIGIILLISYCIRRLRKK 94 (122)
T ss_dssp HHHHHHHHHHHHHHHS--
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 333444555666554433
No 200
>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e.g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].
Probab=54.03 E-value=17 Score=30.85 Aligned_cols=33 Identities=18% Similarity=0.259 Sum_probs=30.1
Q ss_pred eEeEEcCCCCCChHHHHHHHHHHHHhC-CCcEEE
Q psy14941 28 KILAIFPTPAKSHQIIFDTILVELYQR-GHDLTV 60 (513)
Q Consensus 28 kIL~~~p~~~~gH~~~~~~la~~L~~r-GH~Vt~ 60 (513)
||++..+.-+..|.....++|+.|.+. |.+|.+
T Consensus 2 kVfI~Ys~d~~~h~~~V~~la~~L~~~~g~~V~l 35 (150)
T PF08357_consen 2 KVFISYSHDSEEHKEWVLALAEFLRQNCGIDVIL 35 (150)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHHHHhccCCceee
Confidence 788889999999999999999999999 999773
No 201
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=53.48 E-value=36 Score=34.67 Aligned_cols=40 Identities=8% Similarity=0.081 Sum_probs=31.8
Q ss_pred ceEeEEcCCCCCChHHHHHHHHHHHH--hCCCcEEEEEeecC
Q psy14941 27 SKILAIFPTPAKSHQIIFDTILVELY--QRGHDLTVITQYPE 66 (513)
Q Consensus 27 ~kIL~~~p~~~~gH~~~~~~la~~L~--~rGH~Vt~~~~~~~ 66 (513)
.++++++...|-|=.--...||..++ ..|++|.+++.++.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~ 262 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTY 262 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCcc
Confidence 45555777778888889999999997 56899999987654
No 202
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=53.47 E-value=47 Score=31.16 Aligned_cols=35 Identities=14% Similarity=-0.069 Sum_probs=22.8
Q ss_pred eEeEEcCCCCCChHHHHH-HHHHHHHhCCCcEEEEE
Q psy14941 28 KILAIFPTPAKSHQIIFD-TILVELYQRGHDLTVIT 62 (513)
Q Consensus 28 kIL~~~p~~~~gH~~~~~-~la~~L~~rGH~Vt~~~ 62 (513)
||.+++|.....++..+. .+.+++.++|++|++..
T Consensus 1 ~igv~~~~~~~~~~~~~~~~i~~~~~~~g~~v~~~~ 36 (282)
T cd06318 1 KIGFSQYTLNSPFFAALTEAAKAHAKALGYELISTD 36 (282)
T ss_pred CeeEEeccccCHHHHHHHHHHHHHHHHcCCEEEEEc
Confidence 466667765444444433 77788889999987643
No 203
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=53.31 E-value=18 Score=34.22 Aligned_cols=51 Identities=31% Similarity=0.385 Sum_probs=38.4
Q ss_pred CceEEeccCCcccHHHHHH-cCcceEeeccccCcHHHHHHHHHcCcEEEeccCCCCHHHHHHHHHHhc
Q psy14941 358 NMKLFISHGGLLGITEAVY-EGIPVLGIPVFGDQWANIKKLESLKAGKLLPYLEITEETVSDALKIVL 424 (513)
Q Consensus 358 ~~~~~IthgG~~s~~Eal~-~GvP~i~~P~~~DQ~~na~~~~~~G~G~~l~~~~~~~~~l~~ai~~ll 424 (513)
.++++|+=||-||++.|.. ...|++++-.. .+|.. .+.+.+++.+++++++
T Consensus 52 ~~D~vi~lGGDGT~L~a~~~~~~PilGIN~G-------------~lGFL---~~~~~~~~~~~l~~i~ 103 (271)
T PRK01185 52 NADVIITIGGDGTILRTLQRAKGPILGINMG-------------GLGFL---TEIEIDEVGSAIKKLI 103 (271)
T ss_pred CCCEEEEEcCcHHHHHHHHHcCCCEEEEECC-------------CCccC---cccCHHHHHHHHHHHH
Confidence 5799999999999999987 45688877321 12332 2467889999999998
No 204
>PF15102 TMEM154: TMEM154 protein family
Probab=53.21 E-value=8.2 Score=32.26 Aligned_cols=14 Identities=21% Similarity=0.161 Sum_probs=7.2
Q ss_pred HHHhhccccccccC
Q psy14941 499 KYLCGSLVRRKHKT 512 (513)
Q Consensus 499 ~~~~~~~~~~~~k~ 512 (513)
.++-...+|+|.|+
T Consensus 76 V~lv~~~kRkr~K~ 89 (146)
T PF15102_consen 76 VCLVIYYKRKRTKQ 89 (146)
T ss_pred HHheeEEeecccCC
Confidence 33444445666665
No 205
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=52.81 E-value=23 Score=30.21 Aligned_cols=52 Identities=17% Similarity=0.169 Sum_probs=35.2
Q ss_pred eEeEEcCCCCCChHHHHHHHHHHHHhCCCcEEEEEeecCCccccCCeEEEEe
Q psy14941 28 KILAIFPTPAKSHQIIFDTILVELYQRGHDLTVITQYPETLVHYERMKVLDI 79 (513)
Q Consensus 28 kIL~~~p~~~~gH~~~~~~la~~L~~rGH~Vt~~~~~~~~~~~~~~~~~i~~ 79 (513)
|+|+++++-...----...+|..|.++||+|.+.-.....+...+++..+.+
T Consensus 2 k~LIlYstr~GqT~kIA~~iA~~L~e~g~qvdi~dl~~~~~~~l~~ydavVI 53 (175)
T COG4635 2 KTLILYSTRDGQTRKIAEYIASHLRESGIQVDIQDLHAVEEPALEDYDAVVI 53 (175)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHhhhcCCeeeeeehhhhhccChhhCceEEE
Confidence 7887777765555567788999999999999987654333211445555544
No 206
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=52.14 E-value=18 Score=29.11 Aligned_cols=35 Identities=14% Similarity=0.367 Sum_probs=29.7
Q ss_pred eEeEEcCCCCCChHHHHHHHHHHHHhCCCcEEEEEe
Q psy14941 28 KILAIFPTPAKSHQIIFDTILVELYQRGHDLTVITQ 63 (513)
Q Consensus 28 kIL~~~p~~~~gH~~~~~~la~~L~~rGH~Vt~~~~ 63 (513)
|++ +...+..-|-.-+..++..|.++||+|.++..
T Consensus 2 ~v~-~~~~~~~~~~lGl~~la~~l~~~G~~v~~~d~ 36 (121)
T PF02310_consen 2 RVV-LACVPGEVHPLGLLYLAAYLRKAGHEVDILDA 36 (121)
T ss_dssp EEE-EEEBTTSSTSHHHHHHHHHHHHTTBEEEEEES
T ss_pred EEE-EEeeCCcchhHHHHHHHHHHHHCCCeEEEECC
Confidence 566 66667889999999999999999999998854
No 207
>PRK05920 aromatic acid decarboxylase; Validated
Probab=51.46 E-value=16 Score=32.91 Aligned_cols=40 Identities=13% Similarity=0.118 Sum_probs=31.4
Q ss_pred cCceEeEEcCCCCCChHHHHHHHHHHHHhCCCcEEEEEeecC
Q psy14941 25 QCSKILAIFPTPAKSHQIIFDTILVELYQRGHDLTVITQYPE 66 (513)
Q Consensus 25 ~~~kIL~~~p~~~~gH~~~~~~la~~L~~rGH~Vt~~~~~~~ 66 (513)
...||++.++ |.+...-...+.++|.+.||+|.++.+...
T Consensus 2 ~~krIllgIT--Gsiaa~ka~~lvr~L~~~g~~V~vi~T~~A 41 (204)
T PRK05920 2 KMKRIVLAIT--GASGAIYGVRLLECLLAADYEVHLVISKAA 41 (204)
T ss_pred CCCEEEEEEe--CHHHHHHHHHHHHHHHHCCCEEEEEEChhH
Confidence 4578874444 457778999999999999999999988553
No 208
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=51.13 E-value=32 Score=25.58 Aligned_cols=35 Identities=9% Similarity=0.093 Sum_probs=27.6
Q ss_pred ceEeEEcCCCCCChHHHHHHHHHHHHhCCCcEEEEE
Q psy14941 27 SKILAIFPTPAKSHQIIFDTILVELYQRGHDLTVIT 62 (513)
Q Consensus 27 ~kIL~~~p~~~~gH~~~~~~la~~L~~rGH~Vt~~~ 62 (513)
..++ ++.++...|......+|+.|+++|..|...-
T Consensus 16 k~~v-~i~HG~~eh~~ry~~~a~~L~~~G~~V~~~D 50 (79)
T PF12146_consen 16 KAVV-VIVHGFGEHSGRYAHLAEFLAEQGYAVFAYD 50 (79)
T ss_pred CEEE-EEeCCcHHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 3444 5566667999999999999999999977543
No 209
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=50.80 E-value=1.5e+02 Score=26.70 Aligned_cols=153 Identities=12% Similarity=0.104 Sum_probs=77.9
Q ss_pred CCceEEEEeCcccccCCCCHHHHHHHHHHHhcCCCeEEEEEcCCC--CCCCCCCCcEEEecCCCccccccCCCceEEecc
Q psy14941 288 HNGVIYFSMGSMLKTSSFPPDKFKAFLKAFSKIPQRVLWKFEDND--TSIFKPYKNIRTSSWMPQRDIFAHPNMKLFISH 365 (513)
Q Consensus 288 ~~~~v~vs~Gs~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~nv~~~~~~pq~~lL~h~~~~~~Ith 365 (513)
++++++|.-|..+ ..-+..|.+.+..+.+..+... +.+..+..++.+..--.+...+ ..++++|..
T Consensus 9 gk~vlVvGgG~va----------~rk~~~Ll~~ga~VtVvsp~~~~~l~~l~~~~~i~~~~~~~~~~dl--~~~~lVi~a 76 (205)
T TIGR01470 9 GRAVLVVGGGDVA----------LRKARLLLKAGAQLRVIAEELESELTLLAEQGGITWLARCFDADIL--EGAFLVIAA 76 (205)
T ss_pred CCeEEEECcCHHH----------HHHHHHHHHCCCEEEEEcCCCCHHHHHHHHcCCEEEEeCCCCHHHh--CCcEEEEEC
Confidence 5666666666554 2233444445666554433211 1110002355543322334445 567888888
Q ss_pred CCcccH-----HHHHHcCcceEee--ccccCcHHHHHHHHHcCcEEEeccC---CCCHHHHHHHHHHhc-C--HHHHHHH
Q psy14941 366 GGLLGI-----TEAVYEGIPVLGI--PVFGDQWANIKKLESLKAGKLLPYL---EITEETVSDALKIVL-S--PEYKENA 432 (513)
Q Consensus 366 gG~~s~-----~Eal~~GvP~i~~--P~~~DQ~~na~~~~~~G~G~~l~~~---~~~~~~l~~ai~~ll-~--~~y~~~a 432 (513)
-|...+ .+|-..|+|+-+. |-.+| +.+-..+.+-++-+.+..+ ..-+..|++.|.+++ . ..+.+.+
T Consensus 77 t~d~~ln~~i~~~a~~~~ilvn~~d~~e~~~-f~~pa~~~~g~l~iaisT~G~sP~la~~lr~~ie~~l~~~~~~~~~~~ 155 (205)
T TIGR01470 77 TDDEELNRRVAHAARARGVPVNVVDDPELCS-FIFPSIVDRSPVVVAISSGGAAPVLARLLRERIETLLPPSLGDLATLA 155 (205)
T ss_pred CCCHHHHHHHHHHHHHcCCEEEECCCcccCe-EEEeeEEEcCCEEEEEECCCCCcHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 886533 4445678888443 32222 1112222333344444433 234467888888888 3 4567777
Q ss_pred HHHHHHHhcCCCChHHHHHHH
Q psy14941 433 EDLGTRFRDRPQSPLEVAIYW 453 (513)
Q Consensus 433 ~~~~~~~~~~~~~~~~~a~~~ 453 (513)
.++...++..--++.++=..|
T Consensus 156 ~~~R~~~k~~~~~~~~r~~~~ 176 (205)
T TIGR01470 156 ATWRDAVKKRLPNGAARRRFW 176 (205)
T ss_pred HHHHHHHHhhCCCHHHHHHHH
Confidence 777777775533444443443
No 210
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=50.56 E-value=13 Score=39.57 Aligned_cols=51 Identities=27% Similarity=0.367 Sum_probs=39.1
Q ss_pred CceEEeccCCcccHHHHHH----cCcceEeeccccCcHHHHHHHHHcCcEEEeccCCCCHHHHHHHHHHhc
Q psy14941 358 NMKLFISHGGLLGITEAVY----EGIPVLGIPVFGDQWANIKKLESLKAGKLLPYLEITEETVSDALKIVL 424 (513)
Q Consensus 358 ~~~~~IthgG~~s~~Eal~----~GvP~i~~P~~~DQ~~na~~~~~~G~G~~l~~~~~~~~~l~~ai~~ll 424 (513)
.++++|+-||-||++.|.. .++|++++-... +|-. -+.+.+++.+++.+++
T Consensus 348 ~~dlvi~lGGDGT~L~aa~~~~~~~~PilGin~G~-------------lGFL---~~~~~~~~~~~l~~~~ 402 (569)
T PRK14076 348 EISHIISIGGDGTVLRASKLVNGEEIPIICINMGT-------------VGFL---TEFSKEEIFKAIDSII 402 (569)
T ss_pred CCCEEEEECCcHHHHHHHHHhcCCCCCEEEEcCCC-------------CCcC---cccCHHHHHHHHHHHH
Confidence 5799999999999999976 378999884321 2222 2567888999999998
No 211
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=50.24 E-value=18 Score=33.18 Aligned_cols=26 Identities=15% Similarity=0.083 Sum_probs=20.1
Q ss_pred hHHHHHHHHHHHHhCCCcEEEEEeec
Q psy14941 40 HQIIFDTILVELYQRGHDLTVITQYP 65 (513)
Q Consensus 40 H~~~~~~la~~L~~rGH~Vt~~~~~~ 65 (513)
|...|...|++|.++||+|.++....
T Consensus 47 ~~saMRhfa~~L~~~G~~V~Y~~~~~ 72 (224)
T PF04244_consen 47 FFSAMRHFADELRAKGFRVHYIELDD 72 (224)
T ss_dssp HHHHHHHHHHHHHHTT--EEEE-TT-
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCC
Confidence 67799999999999999999998754
No 212
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=49.47 E-value=26 Score=32.90 Aligned_cols=40 Identities=18% Similarity=0.208 Sum_probs=34.0
Q ss_pred cCceEeEEcCCCCCChHHHHHHHHHHHHhCCCcEEEEEeec
Q psy14941 25 QCSKILAIFPTPAKSHQIIFDTILVELYQRGHDLTVITQYP 65 (513)
Q Consensus 25 ~~~kIL~~~p~~~~gH~~~~~~la~~L~~rGH~Vt~~~~~~ 65 (513)
++.+++ ++..+|.|=..-+.++|.+|.++|+.|+|++...
T Consensus 104 ~~~nl~-l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~e 143 (254)
T COG1484 104 RGENLV-LLGPPGVGKTHLAIAIGNELLKAGISVLFITAPD 143 (254)
T ss_pred cCCcEE-EECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHH
Confidence 677887 8888888888888999999999999999998743
No 213
>smart00096 UTG Uteroglobin.
Probab=49.41 E-value=83 Score=22.76 Aligned_cols=49 Identities=20% Similarity=0.202 Sum_probs=41.4
Q ss_pred CHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHh
Q psy14941 412 TEETVSDALKIVL-SPEYKENAEDLGTRFRDRPQSPLEVAIYWIEYVIKY 460 (513)
Q Consensus 412 ~~~~l~~ai~~ll-~~~y~~~a~~~~~~~~~~~~~~~~~a~~~ie~~~~~ 460 (513)
|.++....+..-- |++..+++.++++-...-+..-.+.+...+|.+...
T Consensus 17 t~~~Y~~~l~~y~~~~~~~ea~~~lK~cvD~L~~~~k~~i~~ll~kI~~s 66 (69)
T smart00096 17 TPSSYEASLKQFKPDPDMLEAGRQLKKLVDTLPQETRENILKLTEKIYTS 66 (69)
T ss_pred CHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHcC
Confidence 7788889999999 999999999999887776666778888888888765
No 214
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=49.32 E-value=20 Score=34.19 Aligned_cols=93 Identities=19% Similarity=0.098 Sum_probs=53.9
Q ss_pred CHHHHHHHHHHHhcCCCeEEEEEcC-CCCCCCCCCCcEEEecCCCccccccCCCceEEeccCCcccHHHHHH---cCcce
Q psy14941 306 PPDKFKAFLKAFSKIPQRVLWKFED-NDTSIFKPYKNIRTSSWMPQRDIFAHPNMKLFISHGGLLGITEAVY---EGIPV 381 (513)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~nv~~~~~~pq~~lL~h~~~~~~IthgG~~s~~Eal~---~GvP~ 381 (513)
..+..+.+.+.+++.+..+.+.-.. ..... . . . .+...+. ...++++|+-||-||+++++. .++|+
T Consensus 14 ~~~~~~~I~~~L~~~g~~v~v~~~~~~~~~~-~-~-~------~~~~~~~-~~~~d~vi~iGGDGTlL~a~~~~~~~~pi 83 (277)
T PRK03708 14 ALKLAYRVYDFLKVSGYEVVVDSETYEHLPE-F-S-E------EDVLPLE-EMDVDFIIAIGGDGTILRIEHKTKKDIPI 83 (277)
T ss_pred HHHHHHHHHHHHHHCCCEEEEecchhhhcCc-c-c-c------ccccccc-ccCCCEEEEEeCcHHHHHHHHhcCCCCeE
Confidence 3456777777777767666653111 11111 0 0 0 0000111 125799999999999999874 45799
Q ss_pred EeeccccCcHHHHHHHHHcCcEEEeccCCCCHHHHHHHHHHhc
Q psy14941 382 LGIPVFGDQWANIKKLESLKAGKLLPYLEITEETVSDALKIVL 424 (513)
Q Consensus 382 i~~P~~~DQ~~na~~~~~~G~G~~l~~~~~~~~~l~~ai~~ll 424 (513)
+++|... .|-. .+++.+++.+++.+++
T Consensus 84 ~gIn~G~-------------lGFl---~~~~~~~~~~~l~~i~ 110 (277)
T PRK03708 84 LGINMGT-------------LGFL---TEVEPEETFFALSRLL 110 (277)
T ss_pred EEEeCCC-------------CCcc---ccCCHHHHHHHHHHHH
Confidence 9887532 1111 1345677888888887
No 215
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=48.77 E-value=17 Score=29.62 Aligned_cols=26 Identities=15% Similarity=0.138 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEeecC
Q psy14941 41 QIIFDTILVELYQRGHDLTVITQYPE 66 (513)
Q Consensus 41 ~~~~~~la~~L~~rGH~Vt~~~~~~~ 66 (513)
..-+.+++.+-.+|||+|.++++...
T Consensus 17 kDTT~alm~eAq~RGhev~~~~~~dL 42 (119)
T PF02951_consen 17 KDTTFALMLEAQRRGHEVFYYEPGDL 42 (119)
T ss_dssp T-HHHHHHHHHHHTT-EEEEE-GGGE
T ss_pred CChHHHHHHHHHHCCCEEEEEEcCcE
Confidence 34678899999999999999988653
No 216
>PF06363 Picorna_P3A: Picornaviridae P3A protein; InterPro: IPR009419 The viral polyprotein of parechoviruses contains: coat protein VP0 (P1AB); coat protein VP3 (P1C); coat protein VP1 (P1D); picornain 2A (3.4.22.29 from EC, core protein P2A); core protein P2B; core protein P2C; core protein P3A; genome-linked protein VPg (P3B); picornain 3C (3.4.22.28 from EC, MEROPS peptidase subfamily 3CF: parechovirus picornain 3C (P3C))[]. This entry consists of the parechovirus P3A protein. P3A has been identified as a genome-linked protein (VPg), which is involved in replication [].; GO: 0019012 virion
Probab=48.74 E-value=1.1e+02 Score=23.18 Aligned_cols=15 Identities=7% Similarity=0.257 Sum_probs=12.3
Q ss_pred CCCHHHHHHHHHHhc
Q psy14941 410 EITEETVSDALKIVL 424 (513)
Q Consensus 410 ~~~~~~l~~ai~~ll 424 (513)
+.+.++|.+.|..++
T Consensus 11 ~~e~s~LIEqiE~~i 25 (100)
T PF06363_consen 11 NIEMSELIEQIEAFI 25 (100)
T ss_pred hhhHHHHHHHHHHHH
Confidence 457788999999988
No 217
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=48.53 E-value=85 Score=30.75 Aligned_cols=92 Identities=11% Similarity=0.108 Sum_probs=62.7
Q ss_pred CceEEEEeC-cccccCCCCHHHHHHHHHHHhcCCCeEEEEEcCCCC------CCCCCCCcEEEecC--CCcc-ccccCCC
Q psy14941 289 NGVIYFSMG-SMLKTSSFPPDKFKAFLKAFSKIPQRVLWKFEDNDT------SIFKPYKNIRTSSW--MPQR-DIFAHPN 358 (513)
Q Consensus 289 ~~~v~vs~G-s~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~nv~~~~~--~pq~-~lL~h~~ 358 (513)
++.|.+..| +.......+.+.+.++++.+.+.+.++++..++++. .+.. +..+.+.+- +.|. .++ .+
T Consensus 175 ~~~i~i~pg~s~~~~K~wp~e~~~~l~~~l~~~~~~Vvl~g~~~e~e~~~~i~~~~-~~~~~l~~k~sL~e~~~li--~~ 251 (334)
T COG0859 175 RPYIVINPGASRGSAKRWPLEHYAELAELLIAKGYQVVLFGGPDEEERAEEIAKGL-PNAVILAGKTSLEELAALI--AG 251 (334)
T ss_pred CCeEEEeccccccccCCCCHHHHHHHHHHHHHCCCEEEEecChHHHHHHHHHHHhc-CCccccCCCCCHHHHHHHH--hc
Confidence 689999999 554556789999999999999888777666555331 1101 112213333 3333 555 67
Q ss_pred ceEEeccCCcccHHHHHHcCcceEee
Q psy14941 359 MKLFISHGGLLGITEAVYEGIPVLGI 384 (513)
Q Consensus 359 ~~~~IthgG~~s~~Eal~~GvP~i~~ 384 (513)
++++|+.=. |-+.=|.+.|+|.|++
T Consensus 252 a~l~I~~DS-g~~HlAaA~~~P~I~i 276 (334)
T COG0859 252 ADLVIGNDS-GPMHLAAALGTPTIAL 276 (334)
T ss_pred CCEEEccCC-hHHHHHHHcCCCEEEE
Confidence 899988643 6777888999999997
No 218
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=48.35 E-value=19 Score=29.70 Aligned_cols=38 Identities=16% Similarity=0.147 Sum_probs=28.1
Q ss_pred ceEeEEcCCCCCChHHHHHHHHHHHHhCCCcEEEEEeecC
Q psy14941 27 SKILAIFPTPAKSHQIIFDTILVELYQRGHDLTVITQYPE 66 (513)
Q Consensus 27 ~kIL~~~p~~~~gH~~~~~~la~~L~~rGH~Vt~~~~~~~ 66 (513)
.||++.++. .++..-...+.++|.++|++|.++.++..
T Consensus 1 k~i~l~vtG--s~~~~~~~~~l~~L~~~g~~v~vv~S~~A 38 (129)
T PF02441_consen 1 KRILLGVTG--SIAAYKAPDLLRRLKRAGWEVRVVLSPSA 38 (129)
T ss_dssp -EEEEEE-S--SGGGGGHHHHHHHHHTTTSEEEEEESHHH
T ss_pred CEEEEEEEC--HHHHHHHHHHHHHHhhCCCEEEEEECCcH
Confidence 377755443 35666699999999999999998887553
No 219
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=48.35 E-value=27 Score=29.19 Aligned_cols=40 Identities=10% Similarity=0.085 Sum_probs=34.2
Q ss_pred cCceEeEEcCCCCCChHHHHHHHHHHHHhCCCcEEEEEeec
Q psy14941 25 QCSKILAIFPTPAKSHQIIFDTILVELYQRGHDLTVITQYP 65 (513)
Q Consensus 25 ~~~kIL~~~p~~~~gH~~~~~~la~~L~~rGH~Vt~~~~~~ 65 (513)
...+|| +...++-+|-.-..-++..|.++|.+|+++....
T Consensus 2 ~~~~vl-~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~v 41 (137)
T PRK02261 2 KKKTVV-LGVIGADCHAVGNKILDRALTEAGFEVINLGVMT 41 (137)
T ss_pred CCCEEE-EEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCC
Confidence 356787 6677889999999999999999999999998743
No 220
>PF02038 ATP1G1_PLM_MAT8: ATP1G1/PLM/MAT8 family; InterPro: IPR000272 The FXYD protein family contains at least seven members in mammals []. Two other family members that are not obvious orthologs of any identified mammalian FXYD protein exist in zebrafish. All these proteins share a signature sequence of six conserved amino acids comprising the FXYD motif in the NH2-terminus, and two glycines and one serine residue in the transmembrane domain. FXYD proteins are widely distributed in mammalian tissues with prominent expression in tissues that perform fluid and solute transport or that are electrically excitable. Initial functional characterisation suggested that FXYD proteins act as channels or as modulators of ion channels however studies have revealed that most FXYD proteins have another specific function and act as tissue-specific regulatory subunits of the Na,K-ATPase. Each of these auxiliary subunits produces a distinct functional effect on the transport characteristics of the Na,K-ATPase that is adjusted to the specific functional demands of the tissue in which the FXYD protein is expressed. FXYD proteins appear to preferentially associate with Na,K-ATPase alpha1-beta isozymes, and affect their function in a way that render them operationally complementary or supplementary to coexisting isozymes.; GO: 0005216 ion channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2JO1_A 2JP3_A 2ZXE_G 3A3Y_G 3N23_E 3B8E_H 3KDP_G 3N2F_E.
Probab=47.86 E-value=24 Score=23.49 Aligned_cols=37 Identities=22% Similarity=0.342 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-hhcccccccc
Q psy14941 475 WYQYYLLDIALVLIVGLVSVCFVLKYL-CGSLVRRKHK 511 (513)
Q Consensus 475 ~~~~~~lDv~~~~~~~~~~~~~~~~~~-~~~~~~~~~k 511 (513)
+|.|..|-+-.++++.++.++-+...+ .|+.|+.++|
T Consensus 8 ~YDy~tLrigGLi~A~vlfi~Gi~iils~kckCk~~qk 45 (50)
T PF02038_consen 8 YYDYETLRIGGLIFAGVLFILGILIILSGKCKCKFNQK 45 (50)
T ss_dssp GGCHHHHHHHHHHHHHHHHHHHHHHHCTTHHHHHHSTT
T ss_pred ccchhHhhccchHHHHHHHHHHHHHHHcCccccCCCCC
Confidence 567888888776666554444333333 3334444444
No 221
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=46.59 E-value=49 Score=33.30 Aligned_cols=40 Identities=8% Similarity=0.116 Sum_probs=33.7
Q ss_pred eEeEEcCCCCCChHHHHHHHHHHHHhCCCcEEEEEeecCC
Q psy14941 28 KILAIFPTPAKSHQIIFDTILVELYQRGHDLTVITQYPET 67 (513)
Q Consensus 28 kIL~~~p~~~~gH~~~~~~la~~L~~rGH~Vt~~~~~~~~ 67 (513)
++++++...|.|=..-...||..|..+|..|.+++.+..+
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~R 281 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR 281 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcc
Confidence 3444777788999999999999999999999999987653
No 222
>PRK00207 sulfur transfer complex subunit TusD; Validated
Probab=46.05 E-value=44 Score=27.56 Aligned_cols=36 Identities=19% Similarity=0.198 Sum_probs=25.3
Q ss_pred eEeEEcCCCCCCh--HHHHHHHHHHHHhCCCcE-EEEEe
Q psy14941 28 KILAIFPTPAKSH--QIIFDTILVELYQRGHDL-TVITQ 63 (513)
Q Consensus 28 kIL~~~p~~~~gH--~~~~~~la~~L~~rGH~V-t~~~~ 63 (513)
|+++++..+.+|+ ..-.+.+|+++.++||+| .++-.
T Consensus 2 ~~~iv~~~~Py~~~~~~~al~~A~aa~~~gh~v~~vFf~ 40 (128)
T PRK00207 2 RYAIAVTGPAYGTQQASSAYQFAQALLAEGHELVSVFFY 40 (128)
T ss_pred EEEEEEcCCCCCCHHHHHHHHHHHHHHhCCCCeeEEEEe
Confidence 6666666655544 456778899999999994 55544
No 223
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=45.64 E-value=1.6e+02 Score=28.79 Aligned_cols=34 Identities=21% Similarity=0.195 Sum_probs=22.8
Q ss_pred CCCccEEEEccchhc---hHHhhhhccCCCEEEEeCC
Q psy14941 130 ENKYDLIITEMFLTD---AFLVIPYLYKVPYISIASS 163 (513)
Q Consensus 130 ~~~~Dlvi~d~~~~~---~~~~~a~~l~iP~i~~~~~ 163 (513)
..++|.|+....... ..+.-|...|||+|.+.+.
T Consensus 78 ~~~vdgIiv~~~d~~al~~~l~~a~~~gIpVV~~d~~ 114 (336)
T PRK15408 78 NQGYNAIIVSAVSPDGLCPALKRAMQRGVKVLTWDSD 114 (336)
T ss_pred HcCCCEEEEecCCHHHHHHHHHHHHHCCCeEEEeCCC
Confidence 367999888654322 2334567779999998763
No 224
>KOG2825|consensus
Probab=45.35 E-value=1.2e+02 Score=28.26 Aligned_cols=46 Identities=13% Similarity=0.052 Sum_probs=35.8
Q ss_pred hccCceEeEEcCCCCCChHHHHHHHHHHHHhCCCcEEEEEeecCCc
Q psy14941 23 IQQCSKILAIFPTPAKSHQIIFDTILVELYQRGHDLTVITQYPETL 68 (513)
Q Consensus 23 ~~~~~kIL~~~p~~~~gH~~~~~~la~~L~~rGH~Vt~~~~~~~~~ 68 (513)
...+.|-.++=.-+|-|-..-.-.||-.|++-+|.|.++++++..+
T Consensus 15 ~q~slKwifVGGKGGVGKTTcs~sLAvqla~~r~~vLiISTDPAHN 60 (323)
T KOG2825|consen 15 EQTSLKWIFVGGKGGVGKTTCSCSLAVQLAKVRESVLIISTDPAHN 60 (323)
T ss_pred hcceeeEEEEcCcCCcCccchhhHHHHHHhccCCceEEeecCcccc
Confidence 3455676644444567888899999999999999999999987544
No 225
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=45.05 E-value=76 Score=31.25 Aligned_cols=93 Identities=11% Similarity=0.077 Sum_probs=60.9
Q ss_pred CCceEEEEeCccc-ccCCCCHHHHHHHHHHHhcCCCeEEEEEcCCCCC------CCCCC----Cc-EEEecCC--Ccc-c
Q psy14941 288 HNGVIYFSMGSML-KTSSFPPDKFKAFLKAFSKIPQRVLWKFEDNDTS------IFKPY----KN-IRTSSWM--PQR-D 352 (513)
Q Consensus 288 ~~~~v~vs~Gs~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~------~~~~~----~n-v~~~~~~--pq~-~ 352 (513)
+++.|.+..|+.. .....+.+.+.++++.+.+.+.++++..++++.. +.. + ++ +.+.+-. .+. .
T Consensus 179 ~~~~i~i~pga~~~~~K~Wp~e~~a~l~~~l~~~~~~vvl~Gg~~e~~~~~~i~~~~-~~~~~~~~~~l~g~~sL~el~a 257 (348)
T PRK10916 179 ERPIIGFCPGAEFGPAKRWPHYHYAELAQQLIDEGYQVVLFGSAKDHEAGNEILAAL-NTEQQAWCRNLAGETQLEQAVI 257 (348)
T ss_pred CCCEEEEeCCCCCccccCCCHHHHHHHHHHHHHCCCeEEEEeCHHhHHHHHHHHHhc-ccccccceeeccCCCCHHHHHH
Confidence 4678888888853 4467888999999988875566766654433211 001 1 11 2233322 232 5
Q ss_pred cccCCCceEEeccCCcccHHHHHHcCcceEee
Q psy14941 353 IFAHPNMKLFISHGGLLGITEAVYEGIPVLGI 384 (513)
Q Consensus 353 lL~h~~~~~~IthgG~~s~~Eal~~GvP~i~~ 384 (513)
++ .++++||+.=. |-+.=|.+.|+|++++
T Consensus 258 li--~~a~l~I~nDT-Gp~HlAaA~g~P~val 286 (348)
T PRK10916 258 LI--AACKAIVTNDS-GLMHVAAALNRPLVAL 286 (348)
T ss_pred HH--HhCCEEEecCC-hHHHHHHHhCCCEEEE
Confidence 66 77999999744 7788899999999986
No 226
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=44.30 E-value=66 Score=31.66 Aligned_cols=40 Identities=18% Similarity=0.103 Sum_probs=32.9
Q ss_pred ceEeEEcCCCCCChHHHHHHHHHHHHhC--CCcEEEEEeecCC
Q psy14941 27 SKILAIFPTPAKSHQIIFDTILVELYQR--GHDLTVITQYPET 67 (513)
Q Consensus 27 ~kIL~~~p~~~~gH~~~~~~la~~L~~r--GH~Vt~~~~~~~~ 67 (513)
.|||++ -..+-|++.-+.++.++|+++ +.++++++.+...
T Consensus 1 mrILii-~~~~iGD~il~tP~l~~Lk~~~P~a~I~~l~~~~~~ 42 (348)
T PRK10916 1 MKILVI-GPSWVGDMMMSQSLYRTLKARYPQAIIDVMAPAWCR 42 (348)
T ss_pred CcEEEE-ccCcccHHHhHHHHHHHHHHHCCCCeEEEEechhhH
Confidence 379944 555789999999999999986 8899999976543
No 227
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=44.28 E-value=34 Score=35.24 Aligned_cols=54 Identities=17% Similarity=0.127 Sum_probs=37.7
Q ss_pred ccCceEeEEcCCCCCChHH------------HHHHHHHHHHhCCCcEEEEEeecCCccccCCeEEEEe
Q psy14941 24 QQCSKILAIFPTPAKSHQI------------IFDTILVELYQRGHDLTVITQYPETLVHYERMKVLDI 79 (513)
Q Consensus 24 ~~~~kIL~~~p~~~~gH~~------------~~~~la~~L~~rGH~Vt~~~~~~~~~~~~~~~~~i~~ 79 (513)
..+.||| +...|..=.+. .-..||+++..||++||+++.+..-.. ..+++.+.+
T Consensus 254 l~gkkvL-ITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA~VtlI~Gp~~~~~-p~~v~~i~V 319 (475)
T PRK13982 254 LAGRRVL-ITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAEVTLISGPVDLAD-PQGVKVIHV 319 (475)
T ss_pred cCCCEEE-EecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCCcEEEEeCCcCCCC-CCCceEEEe
Confidence 4778998 77777654433 457899999999999999986543223 445555554
No 228
>COG2120 Uncharacterized proteins, LmbE homologs [Function unknown]
Probab=43.85 E-value=34 Score=31.73 Aligned_cols=41 Identities=24% Similarity=0.402 Sum_probs=31.4
Q ss_pred hccCceEeEEcCCCCCChHHHHHHHHHHHHhCCCcEEEEEee
Q psy14941 23 IQQCSKILAIFPTPAKSHQIIFDTILVELYQRGHDLTVITQY 64 (513)
Q Consensus 23 ~~~~~kIL~~~p~~~~gH~~~~~~la~~L~~rGH~Vt~~~~~ 64 (513)
....++||+++|+|- ==..-+-.....|+++||+|++++-.
T Consensus 7 ~~~~~~vL~v~aHPD-De~~g~ggtla~~~~~G~~V~v~~lT 47 (237)
T COG2120 7 MLDPLRVLVVFAHPD-DEEIGCGGTLAKLAARGVEVTVVCLT 47 (237)
T ss_pred cccCCcEEEEecCCc-chhhccHHHHHHHHHCCCeEEEEEcc
Confidence 346789999999984 22355667777889999999998863
No 229
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=43.74 E-value=66 Score=33.12 Aligned_cols=36 Identities=11% Similarity=0.203 Sum_probs=27.9
Q ss_pred eEeEEcCCCCCChHHHHHHHHHHHHhCCCcEEEEEe
Q psy14941 28 KILAIFPTPAKSHQIIFDTILVELYQRGHDLTVITQ 63 (513)
Q Consensus 28 kIL~~~p~~~~gH~~~~~~la~~L~~rGH~Vt~~~~ 63 (513)
+|++.-+..+-|=......|++.|+++|++|..+-+
T Consensus 5 ~i~I~gt~s~~GKT~it~~L~~~L~~~G~~V~~fK~ 40 (451)
T PRK01077 5 ALVIAAPASGSGKTTVTLGLMRALRRRGLRVQPFKV 40 (451)
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHhCCCCcceeec
Confidence 355333444568888999999999999999998866
No 230
>COG0801 FolK 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Coenzyme metabolism]
Probab=43.01 E-value=46 Score=28.57 Aligned_cols=37 Identities=19% Similarity=0.271 Sum_probs=27.1
Q ss_pred ceEEEEeCcccccCCCCHHHHHHHHHHHhcCCCeEEEEEc
Q psy14941 290 GVIYFSMGSMLKTSSFPPDKFKAFLKAFSKIPQRVLWKFE 329 (513)
Q Consensus 290 ~~v~vs~Gs~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 329 (513)
..+|+|+||.. ..+.+.++..+.++.+.+..-++..+
T Consensus 2 ~~vyl~LGSNl---gd~~~~l~~A~~~L~~~~~~~v~~~S 38 (160)
T COG0801 2 TRVYLGLGSNL---GDRLKQLRAALAALDALADIRVVAVS 38 (160)
T ss_pred cEEEEEecCCC---CCHHHHHHHHHHHHHhCCCceEEEec
Confidence 36899999998 45667788888888888763344433
No 231
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=42.92 E-value=3.2e+02 Score=26.40 Aligned_cols=31 Identities=26% Similarity=0.495 Sum_probs=21.2
Q ss_pred eEeEEcCCCCC--ChHHHHHHHHHHHHhCCCcEEEEEeec
Q psy14941 28 KILAIFPTPAK--SHQIIFDTILVELYQRGHDLTVITQYP 65 (513)
Q Consensus 28 kIL~~~p~~~~--gH~~~~~~la~~L~~rGH~Vt~~~~~~ 65 (513)
+|| +....|+ || .+.+|.++||+|+++-.-.
T Consensus 2 ~iL-VtGGAGYIGSH------tv~~Ll~~G~~vvV~DNL~ 34 (329)
T COG1087 2 KVL-VTGGAGYIGSH------TVRQLLKTGHEVVVLDNLS 34 (329)
T ss_pred eEE-EecCcchhHHH------HHHHHHHCCCeEEEEecCC
Confidence 566 5444432 45 4778999999999986643
No 232
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=41.84 E-value=1.4e+02 Score=30.64 Aligned_cols=36 Identities=17% Similarity=0.301 Sum_probs=26.6
Q ss_pred hHHHHhccCCCccEEEEccchhchHHhhhhccCCCEEEEeC
Q psy14941 122 NMKSIWNMENKYDLIITEMFLTDAFLVIPYLYKVPYISIAS 162 (513)
Q Consensus 122 ~l~~~l~~~~~~Dlvi~d~~~~~~~~~~a~~l~iP~i~~~~ 162 (513)
++.+.++ ..+||++|.... +. .+|+++|+|++.+..
T Consensus 368 e~~~~i~-~~~pDliiG~s~---~~-~~a~~~gip~v~~~~ 403 (435)
T cd01974 368 HLRSLLF-TEPVDLLIGNTY---GK-YIARDTDIPLVRFGF 403 (435)
T ss_pred HHHHHHh-hcCCCEEEECcc---HH-HHHHHhCCCEEEeeC
Confidence 3455565 678999999765 34 489999999987653
No 233
>PRK09620 hypothetical protein; Provisional
Probab=41.45 E-value=47 Score=30.61 Aligned_cols=22 Identities=27% Similarity=0.368 Sum_probs=18.7
Q ss_pred HHHHHHHHHHhCCCcEEEEEee
Q psy14941 43 IFDTILVELYQRGHDLTVITQY 64 (513)
Q Consensus 43 ~~~~la~~L~~rGH~Vt~~~~~ 64 (513)
--..+|++|.++||+|+++...
T Consensus 31 iGs~LA~~L~~~Ga~V~li~g~ 52 (229)
T PRK09620 31 IGRIIAEELISKGAHVIYLHGY 52 (229)
T ss_pred HHHHHHHHHHHCCCeEEEEeCC
Confidence 3478999999999999999754
No 234
>TIGR03475 tap_IncFII_lead RepA leader peptide Tap. This protein is a translated leader peptide that actis in the regulation of the expression of the plasmid replication protein RepA in incF2 group plasmids.
Probab=40.98 E-value=22 Score=19.59 Aligned_cols=17 Identities=35% Similarity=0.536 Sum_probs=12.7
Q ss_pred ccchhHHHHHHHHHHHh
Q psy14941 6 GRNQYLISAAILLMCIR 22 (513)
Q Consensus 6 ~~~~~~~~~~~~~~~~~ 22 (513)
|.-||+++..+||.|.+
T Consensus 3 rKvQ~~FLc~~LL~cni 19 (26)
T TIGR03475 3 RKVQYLFLCHLLLPCNI 19 (26)
T ss_pred hhHHHHHHHHHHhhhcc
Confidence 45688888887777776
No 235
>PF11395 DUF2873: Protein of unknown function (DUF2873); InterPro: IPR021532 This entry is represented by the human SARS coronavirus, Orf7b; it is a family of uncharacterised viral proteins.
Probab=40.87 E-value=85 Score=19.22 Aligned_cols=13 Identities=31% Similarity=0.697 Sum_probs=6.2
Q ss_pred CCCHHHHHHHHHH
Q psy14941 472 KLTWYQYYLLDIA 484 (513)
Q Consensus 472 ~~~~~~~~~lDv~ 484 (513)
+++.+.+|.--..
T Consensus 3 ~ltl~dfylc~l~ 15 (43)
T PF11395_consen 3 HLTLFDFYLCFLS 15 (43)
T ss_pred ceehhHHHHHHHH
Confidence 3455555544333
No 236
>PRK12342 hypothetical protein; Provisional
Probab=40.48 E-value=29 Score=32.54 Aligned_cols=38 Identities=21% Similarity=0.222 Sum_probs=26.6
Q ss_pred HHHhccCCCccEEEEccchhch-----HHhhhhccCCCEEEEeC
Q psy14941 124 KSIWNMENKYDLIITEMFLTDA-----FLVIPYLYKVPYISIAS 162 (513)
Q Consensus 124 ~~~l~~~~~~Dlvi~d~~~~~~-----~~~~a~~l~iP~i~~~~ 162 (513)
-+.++ ..+||+|++......+ ...+|+.+|+|++....
T Consensus 102 a~~i~-~~~~DLVl~G~~s~D~~tgqvg~~lA~~Lg~P~vt~v~ 144 (254)
T PRK12342 102 AAAIE-KIGFDLLLFGEGSGDLYAQQVGLLLGELLQLPVINAVS 144 (254)
T ss_pred HHHHH-HhCCCEEEEcCCcccCCCCCHHHHHHHHhCCCcEeeEE
Confidence 34444 3469999998765443 33599999999887554
No 237
>PRK14099 glycogen synthase; Provisional
Probab=40.00 E-value=46 Score=34.64 Aligned_cols=40 Identities=8% Similarity=0.076 Sum_probs=30.0
Q ss_pred cCceEeEEcC----CC-CCChHHHHHHHHHHHHhCCCcEEEEEee
Q psy14941 25 QCSKILAIFP----TP-AKSHQIIFDTILVELYQRGHDLTVITQY 64 (513)
Q Consensus 25 ~~~kIL~~~p----~~-~~gH~~~~~~la~~L~~rGH~Vt~~~~~ 64 (513)
++.|||.+.+ +. ..|=-..+.+|.++|+++||+|.++.|.
T Consensus 2 ~~~~il~v~~E~~p~~k~ggl~dv~~~lp~~l~~~g~~v~v~~P~ 46 (485)
T PRK14099 2 TPLRVLSVASEIFPLIKTGGLADVAGALPAALKAHGVEVRTLVPG 46 (485)
T ss_pred CCcEEEEEEeccccccCCCcHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence 3467773322 11 2477788999999999999999999984
No 238
>PRK08939 primosomal protein DnaI; Reviewed
Probab=39.96 E-value=52 Score=31.88 Aligned_cols=37 Identities=14% Similarity=0.209 Sum_probs=30.5
Q ss_pred ceEeEEcCCCCCChHHHHHHHHHHHHhCCCcEEEEEee
Q psy14941 27 SKILAIFPTPAKSHQIIFDTILVELYQRGHDLTVITQY 64 (513)
Q Consensus 27 ~kIL~~~p~~~~gH~~~~~~la~~L~~rGH~Vt~~~~~ 64 (513)
..++ +...+|.|=..-+.++|.+|.++|..|.+++.+
T Consensus 157 ~gl~-L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~ 193 (306)
T PRK08939 157 KGLY-LYGDFGVGKSYLLAAIANELAKKGVSSTLLHFP 193 (306)
T ss_pred CeEE-EECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHH
Confidence 3454 777788888888899999999999999988763
No 239
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=39.61 E-value=57 Score=31.88 Aligned_cols=38 Identities=16% Similarity=0.134 Sum_probs=32.0
Q ss_pred eEeEEcCCCCCChHHHHHHHHHHHHhC--CCcEEEEEeecC
Q psy14941 28 KILAIFPTPAKSHQIIFDTILVELYQR--GHDLTVITQYPE 66 (513)
Q Consensus 28 kIL~~~p~~~~gH~~~~~~la~~L~~r--GH~Vt~~~~~~~ 66 (513)
||| ++-..+-|++.-+.++.++|++. +.++++++....
T Consensus 1 rIL-ii~~~~iGD~i~~~p~l~~Lk~~~P~a~I~~l~~~~~ 40 (334)
T TIGR02195 1 KIL-VIGPSWVGDMVMAQSLYRLLKKRYPQAVIDVLAPAWC 40 (334)
T ss_pred CEE-EEccchhHHHHHHHHHHHHHHHHCCCCEEEEEechhh
Confidence 688 45556789999999999999987 899999997554
No 240
>PF08048 RepA1_leader: Tap RepA1 leader peptide; InterPro: IPR012605 This entry represents of the RepA1 leader peptide known as Tap found in IncFII plasmids. The frequency of replication of IncFII plasmid NR1 during the cell division cycle is regulated by the control of the synthesis of the plasmid-specific replication initiation protein (RepA1). When RepA1 is synthesised, it binds to the plasmid replication origin (ori) and effects the assembly of a replication complex composed of host proteins that mediate the replication of the plasmid [, ]. The tap gene encodes a 24-amino acid peptide whose translation is required for the translation of repA.
Probab=39.01 E-value=28 Score=19.01 Aligned_cols=17 Identities=35% Similarity=0.536 Sum_probs=12.4
Q ss_pred ccchhHHHHHHHHHHHh
Q psy14941 6 GRNQYLISAAILLMCIR 22 (513)
Q Consensus 6 ~~~~~~~~~~~~~~~~~ 22 (513)
|.-||.++..+||.|.+
T Consensus 3 rK~Q~~FLc~lLL~Cni 19 (25)
T PF08048_consen 3 RKVQYLFLCHLLLPCNI 19 (25)
T ss_pred hhHHHHHHHHHHhhhhc
Confidence 45688888877776776
No 241
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=38.91 E-value=39 Score=30.38 Aligned_cols=39 Identities=15% Similarity=0.156 Sum_probs=33.7
Q ss_pred cCceEeEEcCCCCCChHHHHHHHHHHHHhCCCcEEEEEee
Q psy14941 25 QCSKILAIFPTPAKSHQIIFDTILVELYQRGHDLTVITQY 64 (513)
Q Consensus 25 ~~~kIL~~~p~~~~gH~~~~~~la~~L~~rGH~Vt~~~~~ 64 (513)
...||| +.+.++-.|-.-..-++..|..+|++|+++...
T Consensus 81 ~~~~vl-~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~ 119 (201)
T cd02070 81 KKGKVV-IGTVEGDIHDIGKNLVATMLEANGFEVIDLGRD 119 (201)
T ss_pred CCCeEE-EEecCCccchHHHHHHHHHHHHCCCEEEECCCC
Confidence 367888 777789999999999999999999999888753
No 242
>TIGR00345 arsA arsenite-activated ATPase (arsA). The N-terminal 50 amino acids hits Pfam families NB-ARC and fer4_NifH. residues 4-11 of the seed alignment contain a potential ATP binding site. The function of the gene product is to catalyze the extrusion of the oxyanions arsenite, antimonite and arsenate for detoxification. Some members of this family contain a duplication so the model finds hits twice.
Probab=38.88 E-value=79 Score=30.19 Aligned_cols=23 Identities=13% Similarity=0.338 Sum_probs=18.2
Q ss_pred HHHHHHHHhCCCcEEEEEeecCC
Q psy14941 45 DTILVELYQRGHDLTVITQYPET 67 (513)
Q Consensus 45 ~~la~~L~~rGH~Vt~~~~~~~~ 67 (513)
..+|..++++|++|.+++.++..
T Consensus 3 ~a~a~~~a~~g~~vllv~~Dp~~ 25 (284)
T TIGR00345 3 CATAIRLAEQGKKVLLVSTDPAH 25 (284)
T ss_pred HHHHHHHHHCCCeEEEEECCCCC
Confidence 46788889999998888887643
No 243
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=38.83 E-value=56 Score=30.78 Aligned_cols=40 Identities=13% Similarity=0.196 Sum_probs=33.5
Q ss_pred ceEeEEcCCCCCChHHHHHHHHHHHHhCCCcEEEEEeecC
Q psy14941 27 SKILAIFPTPAKSHQIIFDTILVELYQRGHDLTVITQYPE 66 (513)
Q Consensus 27 ~kIL~~~p~~~~gH~~~~~~la~~L~~rGH~Vt~~~~~~~ 66 (513)
+||+.+..-+|-|-..-...||.+|+++|++|.++-.++.
T Consensus 2 ~~iIav~~KGGVGKTT~~~nLA~~la~~G~kVLliD~Dpq 41 (270)
T PRK13185 2 ALVLAVYGKGGIGKSTTSSNLSAAFAKLGKKVLQIGCDPK 41 (270)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeccCC
Confidence 3666666778889999999999999999999988876653
No 244
>TIGR03012 sulf_tusD_dsrE sulfur relay protein TusD/DsrE. The three proteins TusB, TusC, and TusD form a heterohexamer responsible for a sulfur relay reaction. In large numbers of proteobacterial species, this complex acts on a Cys-derived persulfide moiety, delivered by the cysteine desulfurase IscS to TusA, then to TusBCD. The activated sulfur group is then transferred to TusE (DsrC), then by MnmA (TrmU) for modification of an anticodon nucleotide in tRNAs for Glu, Lys, and Gln. The sulfur relay complex TusBCD is also found, under the designation DsrEFH, in phototrophic and chemotrophic sulfur bacteria, such as Chromatium vinosum. In these organisms, it seems the primary purpose is related to sulfur flux, such as oxidation from sulfide to molecular sulfur to sulfate.
Probab=38.00 E-value=63 Score=26.57 Aligned_cols=35 Identities=17% Similarity=0.209 Sum_probs=23.3
Q ss_pred EeEEcCCCCCChH--HHHHHHHHHHHhCCCcE-EEEEe
Q psy14941 29 ILAIFPTPAKSHQ--IIFDTILVELYQRGHDL-TVITQ 63 (513)
Q Consensus 29 IL~~~p~~~~gH~--~~~~~la~~L~~rGH~V-t~~~~ 63 (513)
+++++..+.+|+. .-.+.+|+++.+.||+| .++-.
T Consensus 2 ~~iv~~~~P~~~~~~~~al~~A~aa~~~gh~v~~vFf~ 39 (127)
T TIGR03012 2 YTLLVTGPPYGTQAASSAYQFAQALLAKGHEIVRVFFY 39 (127)
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHHCCCcEEEEEEe
Confidence 4445555545554 45778899999999995 55443
No 245
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=37.82 E-value=37 Score=30.60 Aligned_cols=35 Identities=11% Similarity=0.103 Sum_probs=30.7
Q ss_pred eEEcCCCCCChHHHHHHHHHHHHhCCCcEEEEEee
Q psy14941 30 LAIFPTPAKSHQIIFDTILVELYQRGHDLTVITQY 64 (513)
Q Consensus 30 L~~~p~~~~gH~~~~~~la~~L~~rGH~Vt~~~~~ 64 (513)
+++...|+.|-.-....||++|.++||+|..++.+
T Consensus 4 iIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kd 38 (261)
T COG4088 4 IILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKD 38 (261)
T ss_pred EEEecCCCCCchHHHHHHHHHHHHhhhhccccchh
Confidence 44788899999999999999999999998877663
No 246
>PRK02122 glucosamine-6-phosphate deaminase-like protein; Validated
Probab=37.74 E-value=47 Score=35.90 Aligned_cols=37 Identities=24% Similarity=0.443 Sum_probs=31.6
Q ss_pred ceEeEEcCCCCCChHHHHHHHHHHHHhCCCcEEEEEee
Q psy14941 27 SKILAIFPTPAKSHQIIFDTILVELYQRGHDLTVITQY 64 (513)
Q Consensus 27 ~kIL~~~p~~~~gH~~~~~~la~~L~~rGH~Vt~~~~~ 64 (513)
.|||++.|+|. =-.+-|-.....|+++||+|+++...
T Consensus 370 ~rvLv~spHPD-Devi~~GGTlarl~~~G~~V~vv~~T 406 (652)
T PRK02122 370 KRVIIFSPHPD-DDVISMGGTFRRLVEQGHDVHVAYQT 406 (652)
T ss_pred ceEEEEEeCCC-chHhhhHHHHHHHHHCCCcEEEEEec
Confidence 78999999986 46788888889999999999987653
No 247
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=37.70 E-value=1.7e+02 Score=26.00 Aligned_cols=37 Identities=11% Similarity=0.073 Sum_probs=24.9
Q ss_pred eEeEEcCCCCCChHHHHHHHHHHHHhCCCcEEEEEee
Q psy14941 28 KILAIFPTPAKSHQIIFDTILVELYQRGHDLTVITQY 64 (513)
Q Consensus 28 kIL~~~p~~~~gH~~~~~~la~~L~~rGH~Vt~~~~~ 64 (513)
+||.+..+-|.+.-.-...+.+.+.+.|.++.+.++.
T Consensus 1 ~ilYlHGF~Ssp~S~Ka~~l~~~~~~~~~~~~~~~p~ 37 (187)
T PF05728_consen 1 MILYLHGFNSSPQSFKAQALKQYFAEHGPDIQYPCPD 37 (187)
T ss_pred CeEEecCCCCCCCCHHHHHHHHHHHHhCCCceEECCC
Confidence 3555555555555556677888888888888777663
No 248
>PHA02754 hypothetical protein; Provisional
Probab=37.22 E-value=51 Score=22.52 Aligned_cols=24 Identities=13% Similarity=0.331 Sum_probs=19.4
Q ss_pred HHHHhc-CHHHHHHHHHHHHHHhcC
Q psy14941 419 ALKIVL-SPEYKENAEDLGTRFRDR 442 (513)
Q Consensus 419 ai~~ll-~~~y~~~a~~~~~~~~~~ 442 (513)
.|.+.+ +++|++.++++++.+.++
T Consensus 6 Ei~k~i~eK~Fke~MRelkD~LSe~ 30 (67)
T PHA02754 6 EIPKAIMEKDFKEAMRELKDILSEA 30 (67)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhhC
Confidence 455566 899999999999988765
No 249
>COG0391 Uncharacterized conserved protein [Function unknown]
Probab=37.17 E-value=3.9e+02 Score=26.02 Aligned_cols=138 Identities=12% Similarity=0.061 Sum_probs=77.0
Q ss_pred CCceEEeCcccccCCCCCcHHHHHHhhcCCCceEEEEeCcccccCCCCHHHHHHHHHHHhcCCCeEEEEEcCCCCCCCCC
Q psy14941 259 PANVVEIGGIHVKPAKKLNEEMERFLNESHNGVIYFSMGSMLKTSSFPPDKFKAFLKAFSKIPQRVLWKFEDNDTSIFKP 338 (513)
Q Consensus 259 ~p~~~~vG~l~~~~~~~l~~~l~~~l~~~~~~~v~vs~Gs~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 338 (513)
..++.+.|+ ..+++.++.++...+ ...|.++-||... +-+|.-.+..+.+++++....++....-...+.+.
T Consensus 166 v~~V~~~~~---~~~~a~~eaveAI~~---AD~IviGPgSl~T-SIlP~Lllp~I~eaLr~~~ap~i~v~n~~~~~g~~- 237 (323)
T COG0391 166 VHRVRLEGP---EKPSAAPEAVEAIKE---ADLIVIGPGSLFT-SILPILLLPGIAEALRETVAPIVYVCNLMTQAGKE- 237 (323)
T ss_pred ceEEEEecC---CCCCCCHHHHHHHHh---CCEEEEcCCccHh-hhchhhchhHHHHHHHhCCCCEEEeccCCCCCCcc-
Confidence 455666663 335566777777765 3689999999885 36777888999999998766766654432222201
Q ss_pred CCcEEEecCCCc-cccccCCCceEEeccCCcccHHHHHHcCcceEeeccccCcHHHHHHHHHcCcEEEeccCCCCHHHHH
Q psy14941 339 YKNIRTSSWMPQ-RDIFAHPNMKLFISHGGLLGITEAVYEGIPVLGIPVFGDQWANIKKLESLKAGKLLPYLEITEETVS 417 (513)
Q Consensus 339 ~~nv~~~~~~pq-~~lL~h~~~~~~IthgG~~s~~Eal~~GvP~i~~P~~~DQ~~na~~~~~~G~G~~l~~~~~~~~~l~ 417 (513)
.+++...+.+-- .+..+...+|.+|.+.- ...||..+ ++++..+.-+..+...++.+.+.
T Consensus 238 t~~~~~~d~i~~i~~~~g~~~iD~vivd~~------------------~~~~~~~~-~~~~~~~~~V~~~~~~~~~~~~~ 298 (323)
T COG0391 238 TDGLSVEDHIAALAQHYGAFVIDAVIVDND------------------DVEDEDLI-RYVEEKGLEVEIDPTLLDREGLR 298 (323)
T ss_pred cccccHHHHHHHHHHHhCcccCcEEEECCC------------------CccHHHHH-HHhhhcCceeEechhhhhchhhH
Confidence 122221111100 01111111233333321 23466666 77787888777776666666664
Q ss_pred HHHHHh
Q psy14941 418 DALKIV 423 (513)
Q Consensus 418 ~ai~~l 423 (513)
..+.+-
T Consensus 299 ~~~~~~ 304 (323)
T COG0391 299 RALARN 304 (323)
T ss_pred HHHHHH
Confidence 444443
No 250
>PRK10653 D-ribose transporter subunit RbsB; Provisional
Probab=36.84 E-value=2.2e+02 Score=26.88 Aligned_cols=37 Identities=19% Similarity=0.134 Sum_probs=23.4
Q ss_pred CceEeEEcCCCCCChHHH-HHHHHHHHHhCCCcEEEEE
Q psy14941 26 CSKILAIFPTPAKSHQII-FDTILVELYQRGHDLTVIT 62 (513)
Q Consensus 26 ~~kIL~~~p~~~~gH~~~-~~~la~~L~~rGH~Vt~~~ 62 (513)
...|.+++|......+.. ...+.+++.++|+++.+..
T Consensus 26 ~~~I~vi~~~~~~~f~~~~~~~i~~~~~~~G~~~~~~~ 63 (295)
T PRK10653 26 KDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLD 63 (295)
T ss_pred CCeEEEEecCCCChHHHHHHHHHHHHHHHcCCeEEEec
Confidence 456666666544333433 3467788888999987754
No 251
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=36.73 E-value=28 Score=26.11 Aligned_cols=24 Identities=17% Similarity=0.395 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHhh
Q psy14941 480 LLDIALVLIVGL-VSVCFVLKYLCG 503 (513)
Q Consensus 480 ~lDv~~~~~~~~-~~~~~~~~~~~~ 503 (513)
+||++.+....+ ++++++|..||+
T Consensus 32 ~Lgm~~lvI~~iFil~VilwfvCC~ 56 (94)
T PF05393_consen 32 NLGMWFLVICGIFILLVILWFVCCK 56 (94)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHH
Confidence 677764443333 333444444443
No 252
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=36.43 E-value=37 Score=29.88 Aligned_cols=37 Identities=22% Similarity=0.209 Sum_probs=28.5
Q ss_pred eEeEEcCCCCCChHHHHHHHHHHHHhCCCcEEEEEeecC
Q psy14941 28 KILAIFPTPAKSHQIIFDTILVELYQRGHDLTVITQYPE 66 (513)
Q Consensus 28 kIL~~~p~~~~gH~~~~~~la~~L~~rGH~Vt~~~~~~~ 66 (513)
||++.++ |.+...-...+.++|.++|++|.++.+...
T Consensus 2 ~I~lgvt--Gs~~a~~~~~ll~~L~~~g~~V~vi~T~~A 38 (177)
T TIGR02113 2 KILLAVT--GSIAAYKAADLTSQLTKLGYDVTVLMTQAA 38 (177)
T ss_pred EEEEEEc--CHHHHHHHHHHHHHHHHCCCEEEEEEChHH
Confidence 6763433 457777888999999999999998887553
No 253
>KOG2754|consensus
Probab=36.28 E-value=78 Score=30.99 Aligned_cols=53 Identities=23% Similarity=0.280 Sum_probs=33.3
Q ss_pred hHHHHHHHHH-HHh-hccCceEeEEcCCCC--CChHHHHHHHHHHHHhCCCcEEEEEeecC
Q psy14941 10 YLISAAILLM-CIR-IQQCSKILAIFPTPA--KSHQIIFDTILVELYQRGHDLTVITQYPE 66 (513)
Q Consensus 10 ~~~~~~~~~~-~~~-~~~~~kIL~~~p~~~--~gH~~~~~~la~~L~~rGH~Vt~~~~~~~ 66 (513)
+|...+++|. +-+ .+.++|.|++.-..+ .+|-. .-+.|.+|||++++-..++.
T Consensus 5 ~~~~~~llla~~~~v~~~~~RtLVL~d~~~~~ethSv----Fl~sLkdRgf~L~~~~a~ds 61 (443)
T KOG2754|consen 5 AWLIFCLLLALIGFVLSQAARTLVLLDNLAVKETHSV----FLKSLKDRGFKLTYKLADDS 61 (443)
T ss_pred HHHHHHHHHHHHHHHhcccCcEEEEeeccccccchhh----hhhhHHhcCceeEEEecCCc
Confidence 3443343433 334 788899986644322 24433 45788999999999887553
No 254
>PLN02727 NAD kinase
Probab=35.73 E-value=50 Score=36.69 Aligned_cols=52 Identities=21% Similarity=0.126 Sum_probs=39.8
Q ss_pred CCceEEeccCCcccHHHHHHc----CcceEeeccccCcHHHHHHHHHcCcEEEeccCCCCHHHHHHHHHHhc
Q psy14941 357 PNMKLFISHGGLLGITEAVYE----GIPVLGIPVFGDQWANIKKLESLKAGKLLPYLEITEETVSDALKIVL 424 (513)
Q Consensus 357 ~~~~~~IthgG~~s~~Eal~~----GvP~i~~P~~~DQ~~na~~~~~~G~G~~l~~~~~~~~~l~~ai~~ll 424 (513)
..++++|+=||-||++.|... ++|++++-.. -+|-. -+++.+++.++|.+++
T Consensus 742 ~~~DLVIvLGGDGTlLrAar~~~~~~iPILGINlG-------------rLGFL---Tdi~~ee~~~~L~~Il 797 (986)
T PLN02727 742 ERVDFVACLGGDGVILHASNLFRGAVPPVVSFNLG-------------SLGFL---TSHYFEDFRQDLRQVI 797 (986)
T ss_pred cCCCEEEEECCcHHHHHHHHHhcCCCCCEEEEeCC-------------Ccccc---ccCCHHHHHHHHHHHH
Confidence 468999999999999999764 6898888432 12322 2467888999999998
No 255
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=35.58 E-value=85 Score=25.31 Aligned_cols=37 Identities=22% Similarity=0.207 Sum_probs=31.7
Q ss_pred eEeEEcCCCCCChHHHHHHHHHHHHhCCCcEEEEEeec
Q psy14941 28 KILAIFPTPAKSHQIIFDTILVELYQRGHDLTVITQYP 65 (513)
Q Consensus 28 kIL~~~p~~~~gH~~~~~~la~~L~~rGH~Vt~~~~~~ 65 (513)
||+ +...++.|=......+++.|+++|.+|.++..++
T Consensus 1 ~i~-~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~ 37 (116)
T cd02034 1 KIA-ITGKGGVGKTTIAALLARYLAEKGKPVLAIDADP 37 (116)
T ss_pred CEE-EECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCc
Confidence 355 7777888999999999999999999999888765
No 256
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=35.56 E-value=38 Score=30.02 Aligned_cols=37 Identities=16% Similarity=0.073 Sum_probs=25.4
Q ss_pred eEeEEcCCCCCChHHHH-HHHHHHHHhCCCcEEEEEeecC
Q psy14941 28 KILAIFPTPAKSHQIIF-DTILVELYQRGHDLTVITQYPE 66 (513)
Q Consensus 28 kIL~~~p~~~~gH~~~~-~~la~~L~~rGH~Vt~~~~~~~ 66 (513)
||++-++ |.+-..-. ..+.++|.++|++|+++.+...
T Consensus 2 ~I~lgIT--Gs~~a~~a~~~ll~~L~~~g~~V~vI~S~~A 39 (187)
T TIGR02852 2 RIGFGLT--GSHCTLEAVMPQLEKLVDEGAEVTPIVSETV 39 (187)
T ss_pred EEEEEEe--cHHHHHHHHHHHHHHHHhCcCEEEEEEchhH
Confidence 5653322 33444444 5999999999999998887543
No 257
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=35.50 E-value=48 Score=29.71 Aligned_cols=39 Identities=15% Similarity=0.147 Sum_probs=34.3
Q ss_pred CceEeEEcCCCCCChHHHHHHHHHHHHhCCCcEEEEEeec
Q psy14941 26 CSKILAIFPTPAKSHQIIFDTILVELYQRGHDLTVITQYP 65 (513)
Q Consensus 26 ~~kIL~~~p~~~~gH~~~~~~la~~L~~rGH~Vt~~~~~~ 65 (513)
..+|+ +.+.++--|-.-..-++..|..+|++|+++....
T Consensus 84 ~~~vv-~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~v 122 (197)
T TIGR02370 84 LGKVV-CGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDV 122 (197)
T ss_pred CCeEE-EEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCC
Confidence 46887 7777899999999999999999999999998743
No 258
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=35.43 E-value=1.3e+02 Score=26.64 Aligned_cols=40 Identities=13% Similarity=0.153 Sum_probs=34.0
Q ss_pred CceEeEEcCCCCCChHHHHHHHHHHHHhCCCcEEEEEeec
Q psy14941 26 CSKILAIFPTPAKSHQIIFDTILVELYQRGHDLTVITQYP 65 (513)
Q Consensus 26 ~~kIL~~~p~~~~gH~~~~~~la~~L~~rGH~Vt~~~~~~ 65 (513)
..+|++++..++.-|-.-...+++.|++.|-.|.+++-..
T Consensus 107 ~~rivi~v~S~~~~d~~~i~~~~~~lkk~~I~v~vI~~G~ 146 (187)
T cd01452 107 KQRIVAFVGSPIEEDEKDLVKLAKRLKKNNVSVDIINFGE 146 (187)
T ss_pred cceEEEEEecCCcCCHHHHHHHHHHHHHcCCeEEEEEeCC
Confidence 3588889999888888788899999999999999988643
No 259
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=35.38 E-value=73 Score=33.42 Aligned_cols=36 Identities=11% Similarity=0.063 Sum_probs=26.7
Q ss_pred hHHHHhccCCCccEEEEccchhchHHhhhhccCCCEEEEeC
Q psy14941 122 NMKSIWNMENKYDLIITEMFLTDAFLVIPYLYKVPYISIAS 162 (513)
Q Consensus 122 ~l~~~l~~~~~~Dlvi~d~~~~~~~~~~a~~l~iP~i~~~~ 162 (513)
++.+.++ +.+||++|.+.. .- .+|+++|||++.++.
T Consensus 365 ei~~~I~-~~~pdliiGs~~---er-~ia~~lgiP~~~is~ 400 (513)
T CHL00076 365 EVGDMIA-RVEPSAIFGTQM---ER-HIGKRLDIPCGVISA 400 (513)
T ss_pred HHHHHHH-hcCCCEEEECch---hh-HHHHHhCCCEEEeec
Confidence 3455666 678999999864 33 378999999987763
No 260
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=34.99 E-value=1.2e+02 Score=28.41 Aligned_cols=43 Identities=21% Similarity=0.451 Sum_probs=33.4
Q ss_pred ccCceEeEEcCCCCCChHHHHHHHHHHHHhCCCcEEEEEeecC
Q psy14941 24 QQCSKILAIFPTPAKSHQIIFDTILVELYQRGHDLTVITQYPE 66 (513)
Q Consensus 24 ~~~~kIL~~~p~~~~gH~~~~~~la~~L~~rGH~Vt~~~~~~~ 66 (513)
...+.++.+...|+-|--.....|+++|.++||+|-++..+|.
T Consensus 26 ~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPS 68 (266)
T PF03308_consen 26 TGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPS 68 (266)
T ss_dssp TT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GG
T ss_pred cCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCC
Confidence 3446677799999999999999999999999999999998764
No 261
>cd06277 PBP1_LacI_like_1 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=34.94 E-value=1.9e+02 Score=26.67 Aligned_cols=33 Identities=15% Similarity=0.197 Sum_probs=21.8
Q ss_pred CCCccEEEEccchhchHHhhhhccCCCEEEEeC
Q psy14941 130 ENKYDLIITEMFLTDAFLVIPYLYKVPYISIAS 162 (513)
Q Consensus 130 ~~~~Dlvi~d~~~~~~~~~~a~~l~iP~i~~~~ 162 (513)
..++|.+|.........+..+...|+|+|.+..
T Consensus 56 ~~~vdgiii~~~~~~~~~~~l~~~~ipvV~~~~ 88 (268)
T cd06277 56 DGKVDGIILLGGISTEYIKEIKELGIPFVLVDH 88 (268)
T ss_pred HCCCCEEEEeCCCChHHHHHHhhcCCCEEEEcc
Confidence 457999887654333333455667899998764
No 262
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=34.92 E-value=3e+02 Score=24.81 Aligned_cols=87 Identities=15% Similarity=0.143 Sum_probs=53.3
Q ss_pred CcHHHHHHhhcC---CCceEEEEeCcccccCCCCHHHHHHHHHHHhcC-CCeEEEEEcCCCCCCCCCCCcEEEecCCCc-
Q psy14941 276 LNEEMERFLNES---HNGVIYFSMGSMLKTSSFPPDKFKAFLKAFSKI-PQRVLWKFEDNDTSIFKPYKNIRTSSWMPQ- 350 (513)
Q Consensus 276 l~~~l~~~l~~~---~~~~v~vs~Gs~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~nv~~~~~~pq- 350 (513)
.++.+.+++... ...++|+...|. .+++..+.+.+++.++ +..+......+ -++
T Consensus 16 ~~~~l~~~l~~~~~~~~~i~~IptAs~-----~~~~~~~~~~~a~~~l~G~~~~~~~~~~----------------~~~~ 74 (212)
T cd03146 16 ALPAIDDLLLSLTKARPKVLFVPTASG-----DRDEYTARFYAAFESLRGVEVSHLHLFD----------------TEDP 74 (212)
T ss_pred chHHHHHHHHHhccCCCeEEEECCCCC-----CHHHHHHHHHHHHhhccCcEEEEEeccC----------------cccH
Confidence 355677776654 456788876665 3678889999999998 76544321100 111
Q ss_pred cccccCCCceEEeccCCc--------------ccHHHHHHcCcceEeec
Q psy14941 351 RDIFAHPNMKLFISHGGL--------------LGITEAVYEGIPVLGIP 385 (513)
Q Consensus 351 ~~lL~h~~~~~~IthgG~--------------~s~~Eal~~GvP~i~~P 385 (513)
.+.+ .++++++--||. ..+.++...|+|++++-
T Consensus 75 ~~~l--~~ad~I~l~GG~~~~~~~~l~~~~l~~~l~~~~~~g~~i~G~S 121 (212)
T cd03146 75 LDAL--LEADVIYVGGGNTFNLLAQWREHGLDAILKAALERGVVYIGWS 121 (212)
T ss_pred HHHH--hcCCEEEECCchHHHHHHHHHHcCHHHHHHHHHHCCCEEEEEC
Confidence 2334 456777777762 12344555799998874
No 263
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=34.66 E-value=66 Score=27.61 Aligned_cols=36 Identities=17% Similarity=0.081 Sum_probs=27.4
Q ss_pred hccCceEeEEcCCCCCChHHHHHHHHHHHHhCCCcEEEEEee
Q psy14941 23 IQQCSKILAIFPTPAKSHQIIFDTILVELYQRGHDLTVITQY 64 (513)
Q Consensus 23 ~~~~~kIL~~~p~~~~gH~~~~~~la~~L~~rGH~Vt~~~~~ 64 (513)
-.++.||| ++.. |. .....++.|.+.||+|+++.+.
T Consensus 10 ~l~~~~vl-VvGG---G~--va~rka~~Ll~~ga~V~VIsp~ 45 (157)
T PRK06719 10 NLHNKVVV-IIGG---GK--IAYRKASGLKDTGAFVTVVSPE 45 (157)
T ss_pred EcCCCEEE-EECC---CH--HHHHHHHHHHhCCCEEEEEcCc
Confidence 56788998 5443 43 4578899999999999999653
No 264
>PF15086 UPF0542: Uncharacterised protein family UPF0542
Probab=34.16 E-value=82 Score=22.79 Aligned_cols=43 Identities=23% Similarity=0.228 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHhCCCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14941 448 EVAIYWIEYVIKYNGAYHLQSAAVKLTWYQYYLLDIALVLIVGLVSVCFVLKYL 501 (513)
Q Consensus 448 ~~a~~~ie~~~~~~~~~~l~~~~~~~~~~~~~~lDv~~~~~~~~~~~~~~~~~~ 501 (513)
+-+.+.+||++.++. .|+.|..+=..=++++..++.+.+-+-+
T Consensus 6 ~w~~~~v~~vAkdP~-----------~Fl~~vll~LtPlfiisa~lSwkLaK~i 48 (74)
T PF15086_consen 6 AWASYIVEWVAKDPY-----------EFLTTVLLILTPLFIISAVLSWKLAKAI 48 (74)
T ss_pred HHHHHHHHHHHcChH-----------HHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 345566777777644 3554443332222223334445555555
No 265
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=34.10 E-value=94 Score=27.80 Aligned_cols=40 Identities=13% Similarity=0.244 Sum_probs=33.3
Q ss_pred eEeEEcCCCCCChHHHHHHHHHHHHhCCCcEEEEEeecCC
Q psy14941 28 KILAIFPTPAKSHQIIFDTILVELYQRGHDLTVITQYPET 67 (513)
Q Consensus 28 kIL~~~p~~~~gH~~~~~~la~~L~~rGH~Vt~~~~~~~~ 67 (513)
||++++...|-|=..-..+||..+..+|.+|.+++.+..+
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R 41 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYR 41 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSS
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCC
Confidence 5666888889999999999999999999999999997654
No 266
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=33.98 E-value=33 Score=31.92 Aligned_cols=29 Identities=21% Similarity=0.353 Sum_probs=24.0
Q ss_pred CceEEeccCCcccHHHHHHc----CcceEeecc
Q psy14941 358 NMKLFISHGGLLGITEAVYE----GIPVLGIPV 386 (513)
Q Consensus 358 ~~~~~IthgG~~s~~Eal~~----GvP~i~~P~ 386 (513)
.++++|+-||-||++.|+.. ++|++++-.
T Consensus 25 ~~Dlvi~iGGDGTlL~a~~~~~~~~~PvlGIN~ 57 (246)
T PRK04761 25 EADVIVALGGDGFMLQTLHRYMNSGKPVYGMNR 57 (246)
T ss_pred cCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeC
Confidence 46999999999999988664 689988843
No 267
>PRK10355 xylF D-xylose transporter subunit XylF; Provisional
Probab=33.95 E-value=2.2e+02 Score=27.70 Aligned_cols=41 Identities=12% Similarity=-0.074 Sum_probs=26.4
Q ss_pred hccCceEeEEcCCCCCChHHHH-HHHHHHHHhCCCcEEEEEe
Q psy14941 23 IQQCSKILAIFPTPAKSHQIIF-DTILVELYQRGHDLTVITQ 63 (513)
Q Consensus 23 ~~~~~kIL~~~p~~~~gH~~~~-~~la~~L~~rGH~Vt~~~~ 63 (513)
+.++.+|-+++|......+.-+ ..+-+++.++|++|.+..+
T Consensus 22 ~~~~~~Ig~i~~~~~~~f~~~~~~gi~~~a~~~g~~l~i~~~ 63 (330)
T PRK10355 22 HAKEVKIGMAIDDLRLERWQKDRDIFVKKAESLGAKVFVQSA 63 (330)
T ss_pred cCCCceEEEEecCCCchHHHHHHHHHHHHHHHcCCEEEEECC
Confidence 4566888867765543333333 3555677788999887654
No 268
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=33.94 E-value=2.2e+02 Score=29.10 Aligned_cols=36 Identities=25% Similarity=0.310 Sum_probs=27.3
Q ss_pred HhHHHHhccCCCccEEEEccchhchHHhhhhccCCCEEEEe
Q psy14941 121 ENMKSIWNMENKYDLIITEMFLTDAFLVIPYLYKVPYISIA 161 (513)
Q Consensus 121 ~~l~~~l~~~~~~Dlvi~d~~~~~~~~~~a~~l~iP~i~~~ 161 (513)
.++.+.++ +.++|++|.+.. .. .+|+++|||++.+.
T Consensus 362 ~e~~~~l~-~~~~dliiG~s~---~~-~~a~~~~ip~~~~~ 397 (429)
T cd03466 362 FDIESYAK-ELKIDVLIGNSY---GR-RIAEKLGIPLIRIG 397 (429)
T ss_pred HHHHHHHH-hcCCCEEEECch---hH-HHHHHcCCCEEEec
Confidence 34566676 678999999866 33 48999999998664
No 269
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=33.94 E-value=1.4e+02 Score=28.91 Aligned_cols=68 Identities=18% Similarity=0.109 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHhcCCCeEEEEEcCCCCCCCCCCCcEEEecCCCccccccCCCceEEeccCCcccHHHHHHc----CcceE
Q psy14941 307 PDKFKAFLKAFSKIPQRVLWKFEDNDTSIFKPYKNIRTSSWMPQRDIFAHPNMKLFISHGGLLGITEAVYE----GIPVL 382 (513)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~nv~~~~~~pq~~lL~h~~~~~~IthgG~~s~~Eal~~----GvP~i 382 (513)
.+.+..+.+.+++.+..+.+.....+ . . +.. .+ . ...- ..++++|+-||-||+.+++.. ++|++
T Consensus 18 ~~~~~~i~~~L~~~g~~v~v~~~~~~--~-~-~~~----~~-~-~~~~--~~~d~vi~~GGDGT~l~~~~~~~~~~~pv~ 85 (305)
T PRK02645 18 KEAAERCAKQLEARGCKVLMGPSGPK--D-N-PYP----VF-L-ASAS--ELIDLAIVLGGDGTVLAAARHLAPHDIPIL 85 (305)
T ss_pred HHHHHHHHHHHHHCCCEEEEecCchh--h-c-ccc----ch-h-hccc--cCcCEEEEECCcHHHHHHHHHhccCCCCEE
Confidence 35567777777777766555322111 1 1 100 01 1 1111 457999999999999999864 78999
Q ss_pred eecc
Q psy14941 383 GIPV 386 (513)
Q Consensus 383 ~~P~ 386 (513)
++..
T Consensus 86 gin~ 89 (305)
T PRK02645 86 SVNV 89 (305)
T ss_pred EEec
Confidence 8864
No 270
>PRK09004 FMN-binding protein MioC; Provisional
Probab=33.64 E-value=66 Score=27.16 Aligned_cols=36 Identities=14% Similarity=0.160 Sum_probs=26.2
Q ss_pred eEeEEcCCCCCChHHHHHHHHHHHHhCCCcEEEEEe
Q psy14941 28 KILAIFPTPAKSHQIIFDTILVELYQRGHDLTVITQ 63 (513)
Q Consensus 28 kIL~~~p~~~~gH~~~~~~la~~L~~rGH~Vt~~~~ 63 (513)
||++++.+-+..=-.....|++.|.++|++|+++..
T Consensus 3 ~i~I~ygS~tGnae~~A~~l~~~~~~~g~~~~~~~~ 38 (146)
T PRK09004 3 DITLISGSTLGGAEYVADHLAEKLEEAGFSTETLHG 38 (146)
T ss_pred eEEEEEEcCchHHHHHHHHHHHHHHHcCCceEEecc
Confidence 677666665544455667888888899999997643
No 271
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=33.60 E-value=94 Score=32.61 Aligned_cols=36 Identities=8% Similarity=0.069 Sum_probs=27.1
Q ss_pred hHHHHhccCCCccEEEEccchhchHHhhhhccCCCEEEEeC
Q psy14941 122 NMKSIWNMENKYDLIITEMFLTDAFLVIPYLYKVPYISIAS 162 (513)
Q Consensus 122 ~l~~~l~~~~~~Dlvi~d~~~~~~~~~~a~~l~iP~i~~~~ 162 (513)
++.+.++ +.+||++|.+.+ .. .+|+++|+|++.++.
T Consensus 355 ei~~~i~-~~~pdliiG~~~---er-~~a~~lgip~~~i~~ 390 (511)
T TIGR01278 355 EVADAIA-ALEPELVLGTQM---ER-HSAKRLDIPCGVISA 390 (511)
T ss_pred HHHHHHH-hcCCCEEEEChH---HH-HHHHHcCCCEEEecC
Confidence 4555565 678999999865 34 389999999987765
No 272
>PRK09701 D-allose transporter subunit; Provisional
Probab=33.15 E-value=3.8e+02 Score=25.62 Aligned_cols=40 Identities=10% Similarity=0.096 Sum_probs=27.9
Q ss_pred hccCceEeEEcCCCCCChHH-HHHHHHHHHHhCCCcEEEEE
Q psy14941 23 IQQCSKILAIFPTPAKSHQI-IFDTILVELYQRGHDLTVIT 62 (513)
Q Consensus 23 ~~~~~kIL~~~p~~~~gH~~-~~~~la~~L~~rGH~Vt~~~ 62 (513)
.+.++.|.+++|....+.+. ....+.+++.+.|++|.++.
T Consensus 21 ~~~~~~Igvi~~~~~~~f~~~~~~gi~~~a~~~g~~v~~~~ 61 (311)
T PRK09701 21 AFAAAEYAVVLKTLSNPFWVDMKKGIEDEAKTLGVSVDIFA 61 (311)
T ss_pred hccCCeEEEEeCCCCCHHHHHHHHHHHHHHHHcCCeEEEec
Confidence 56677998888776544444 34566677888899988763
No 273
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=33.08 E-value=53 Score=28.81 Aligned_cols=41 Identities=20% Similarity=0.087 Sum_probs=26.8
Q ss_pred CHhHHHHhccCCCccEEEEccchhch-HHhhhhccCCCEEEEeC
Q psy14941 120 HENMKSIWNMENKYDLIITEMFLTDA-FLVIPYLYKVPYISIAS 162 (513)
Q Consensus 120 ~~~l~~~l~~~~~~Dlvi~d~~~~~~-~~~~a~~l~iP~i~~~~ 162 (513)
.+.+.+++ ..+||+||+....... .....+..|||++.+..
T Consensus 59 ~~n~E~ll--~l~PDlii~~~~~~~~~~~~~l~~~gIpvv~i~~ 100 (186)
T cd01141 59 SLNVELIV--ALKPDLVILYGGFQAQTILDKLEQLGIPVLYVNE 100 (186)
T ss_pred CCCHHHHh--ccCCCEEEEecCCCchhHHHHHHHcCCCEEEeCC
Confidence 34555555 4789999986543332 43455678999888753
No 274
>PRK00005 fmt methionyl-tRNA formyltransferase; Reviewed
Probab=32.97 E-value=96 Score=30.04 Aligned_cols=23 Identities=22% Similarity=0.408 Sum_probs=17.7
Q ss_pred HHHHHHHHHHhCCCcEEEEEeec
Q psy14941 43 IFDTILVELYQRGHDLTVITQYP 65 (513)
Q Consensus 43 ~~~~la~~L~~rGH~Vt~~~~~~ 65 (513)
......++|.++||++..+.+.+
T Consensus 11 ~a~~~L~~L~~~~~~i~~Vvt~~ 33 (309)
T PRK00005 11 FAVPSLKALLESGHEVVAVVTQP 33 (309)
T ss_pred HHHHHHHHHHHCCCcEEEEECCC
Confidence 56788889988899988666543
No 275
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=32.90 E-value=1.5e+02 Score=24.89 Aligned_cols=28 Identities=25% Similarity=0.449 Sum_probs=21.9
Q ss_pred CceEEeccCCc------ccHHHHHHcCcceEeec
Q psy14941 358 NMKLFISHGGL------LGITEAVYEGIPVLGIP 385 (513)
Q Consensus 358 ~~~~~IthgG~------~s~~Eal~~GvP~i~~P 385 (513)
+..++++|+|- +.+.+|...++|+|++.
T Consensus 59 ~~~v~~~~~gpG~~n~~~~l~~A~~~~~Pll~i~ 92 (155)
T cd07035 59 KPGVVLVTSGPGLTNAVTGLANAYLDSIPLLVIT 92 (155)
T ss_pred CCEEEEEcCCCcHHHHHHHHHHHHhhCCCEEEEe
Confidence 45677777554 56899999999999985
No 276
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=32.81 E-value=55 Score=26.60 Aligned_cols=36 Identities=17% Similarity=0.139 Sum_probs=31.4
Q ss_pred eEeEEcCCCCCChHHHHHHHHHHHHhCCCcEEEEEee
Q psy14941 28 KILAIFPTPAKSHQIIFDTILVELYQRGHDLTVITQY 64 (513)
Q Consensus 28 kIL~~~p~~~~gH~~~~~~la~~L~~rGH~Vt~~~~~ 64 (513)
||+ +...++-.|-.-..-++.-|...|++|.++.+.
T Consensus 1 ~vv-~~~~~gd~H~lG~~~~~~~l~~~G~~vi~lG~~ 36 (122)
T cd02071 1 RIL-VAKPGLDGHDRGAKVIARALRDAGFEVIYTGLR 36 (122)
T ss_pred CEE-EEecCCChhHHHHHHHHHHHHHCCCEEEECCCC
Confidence 566 667788999999999999999999999998874
No 277
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=32.52 E-value=2e+02 Score=27.59 Aligned_cols=93 Identities=16% Similarity=0.117 Sum_probs=51.3
Q ss_pred HHHHHHhhcCCCceEEEEeCcccccCCCCHHHHHHHHHHHhcCCCeEEEEEcCCCCCCCCCCCcEEEecCCCccccccCC
Q psy14941 278 EEMERFLNESHNGVIYFSMGSMLKTSSFPPDKFKAFLKAFSKIPQRVLWKFEDNDTSIFKPYKNIRTSSWMPQRDIFAHP 357 (513)
Q Consensus 278 ~~l~~~l~~~~~~~v~vs~Gs~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~nv~~~~~~pq~~lL~h~ 357 (513)
+++++...+ .+++=+-+.............+..+.+++++++..+.+-++........ ... +..++.=+.-.-.+|
T Consensus 116 ~E~er~v~~--~gf~g~~l~p~~~~~~~~~~~~~pi~~~a~~~gvpv~ihtG~~~~~~~~-~~~-~~~p~~~~~va~~fP 191 (293)
T COG2159 116 EELERRVRE--LGFVGVKLHPVAQGFYPDDPRLYPIYEAAEELGVPVVIHTGAGPGGAGL-EKG-HSDPLYLDDVARKFP 191 (293)
T ss_pred HHHHHHHHh--cCceEEEecccccCCCCCChHHHHHHHHHHHcCCCEEEEeCCCCCCccc-ccC-CCCchHHHHHHHHCC
Confidence 456666553 3444444433332223445557889999999999888866653321101 110 111111123334579
Q ss_pred CceEEeccCC--cccHHHH
Q psy14941 358 NMKLFISHGG--LLGITEA 374 (513)
Q Consensus 358 ~~~~~IthgG--~~s~~Ea 374 (513)
+.++++.|+| ..=..|+
T Consensus 192 ~l~IVl~H~G~~~p~~~~a 210 (293)
T COG2159 192 ELKIVLGHMGEDYPWELEA 210 (293)
T ss_pred CCcEEEEecCCCCchhHHH
Confidence 9999999999 4444444
No 278
>cd06306 PBP1_TorT-like TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. The Tor respiratory system is consists of three proteins (TorC, TorA, and TorD) and is induced in the presence of TMAO. The TMAO control is tightly regulated by three proteins: TorS, TorT, and TorR. Thus, the disruption of any of these proteins can abolish the Tor respiratory induction. TorT shares homology with the sugar-binding domain of the type I periplasmic binding proteins. The members of TorT-like family bind TMAO or related compounds and are predicted to be involved in signal transduction and/or substrate transport.
Probab=32.39 E-value=2e+02 Score=26.67 Aligned_cols=36 Identities=14% Similarity=0.247 Sum_probs=22.6
Q ss_pred eEeEEcCCCCCChHHHH-HHHHHHHHhCCCcEEEEEe
Q psy14941 28 KILAIFPTPAKSHQIIF-DTILVELYQRGHDLTVITQ 63 (513)
Q Consensus 28 kIL~~~p~~~~gH~~~~-~~la~~L~~rGH~Vt~~~~ 63 (513)
||.+++|.....++..+ ..+.+++.++|.++.+...
T Consensus 1 ~Igvi~~~~~~~f~~~~~~gi~~~a~~~g~~~~~~~~ 37 (268)
T cd06306 1 KLCVLYPHLKDAYWLSVNYGMVEEAKRLGVSLKLLEA 37 (268)
T ss_pred CeEEEcCCCCCHHHHHHHHHHHHHHHHcCCEEEEecC
Confidence 45566776544455444 3555778888988877643
No 279
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=32.12 E-value=45 Score=31.27 Aligned_cols=39 Identities=21% Similarity=0.227 Sum_probs=26.1
Q ss_pred HHHhccCCCccEEEEccchhc-----hHHhhhhccCCCEEEEeCC
Q psy14941 124 KSIWNMENKYDLIITEMFLTD-----AFLVIPYLYKVPYISIASS 163 (513)
Q Consensus 124 ~~~l~~~~~~Dlvi~d~~~~~-----~~~~~a~~l~iP~i~~~~~ 163 (513)
.+.++ ...||+|++...... -...+|+.+|+|++...+.
T Consensus 105 a~ai~-~~~~DLVl~G~~s~D~~tgqvg~~lAe~Lg~P~vt~v~~ 148 (256)
T PRK03359 105 AAAAQ-KAGFDLILCGDGSSDLYAQQVGLLVGEILNIPAINGVSK 148 (256)
T ss_pred HHHHH-HhCCCEEEEcCccccCCCCcHHHHHHHHhCCCceeeEEE
Confidence 34454 346999999765432 2224999999998876543
No 280
>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D.
Probab=32.01 E-value=95 Score=26.11 Aligned_cols=36 Identities=11% Similarity=0.087 Sum_probs=27.1
Q ss_pred eEEcCCCCCChHHHHHHHHHHHHhCCCcEEEEEeec
Q psy14941 30 LAIFPTPAKSHQIIFDTILVELYQRGHDLTVITQYP 65 (513)
Q Consensus 30 L~~~p~~~~gH~~~~~~la~~L~~rGH~Vt~~~~~~ 65 (513)
.++.|.++.|=......+|..|+++|++|.++-...
T Consensus 4 ~v~s~~~g~G~t~~a~~lA~~la~~~~~Vllid~~~ 39 (157)
T PF13614_consen 4 AVWSPKGGVGKTTLALNLAAALARKGKKVLLIDFDF 39 (157)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHHHTTT-EEEEE--S
T ss_pred EEECCCCCCCHHHHHHHHHHHHHhcCCCeEEEECCC
Confidence 334557788999999999999999999977776543
No 281
>COG3563 KpsC Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=32.00 E-value=4.6e+02 Score=27.05 Aligned_cols=155 Identities=13% Similarity=0.142 Sum_probs=83.4
Q ss_pred CHHHHHHHHHHHhcCCCeEEEEE-cCCCC--------CC-CCCCCcEEE-ecCCCccccccC-CCceEEeccCCcccHHH
Q psy14941 306 PPDKFKAFLKAFSKIPQRVLWKF-EDNDT--------SI-FKPYKNIRT-SSWMPQRDIFAH-PNMKLFISHGGLLGITE 373 (513)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~i~~~-~~~~~--------~~-~~~~~nv~~-~~~~pq~~lL~h-~~~~~~IthgG~~s~~E 373 (513)
...++.++-.|+.+.|..-||.- .++-+ .. .. ++.|++ ..-+.-..+|.| .++-++-+|-| .|
T Consensus 165 ~~~~l~m~~~ai~enp~a~i~~kthpdvl~gkkqg~lt~~~~-~~r~~ll~edfnpisll~~~dkvy~~ts~mg----fe 239 (671)
T COG3563 165 ASTFLLMFQTAINENPQADIWVKTHPDVLCGKKQGYLTQLSQ-QHRVHLLAEDFNPISLLQNVDKVYCVTSQMG----FE 239 (671)
T ss_pred hhHHHHHHHHHHhcCCcccEEEEeCCchhcCcccchhhhhcc-CceEEEecccCChHHHHHhcceeEEeecccc----HH
Confidence 45677888889999998767753 22211 11 12 555554 344555566633 23333334433 69
Q ss_pred HHHcCcceEee--ccccCcHHHHHHHHHcCcEEEeccCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCCCChHHHHH
Q psy14941 374 AVYEGIPVLGI--PVFGDQWANIKKLESLKAGKLLPYLEITEETVSDALKIVLSPEYKENAEDLGTRFRDRPQSPLEVAI 451 (513)
Q Consensus 374 al~~GvP~i~~--P~~~DQ~~na~~~~~~G~G~~l~~~~~~~~~l~~ai~~ll~~~y~~~a~~~~~~~~~~~~~~~~~a~ 451 (513)
|+..|+|+++. |++ .|+|+.=++-.-+...-.+.+.++ |.++--+.++-+.-. .+-....-
T Consensus 240 all~~~~~~~fg~p~y------------agwgltddrl~~~~r~akrsl~ql----fyaay~~y~ry~np~-~~~~~~lf 302 (671)
T COG3563 240 ALLCGKPLTTFGLPWY------------AGWGLTDDRLEQTQRRAKRSLLQL----FYAAYLQYSRYLNPN-TGEAGSLF 302 (671)
T ss_pred HHhcCCceeeecchhh------------cccCcchhHHHHHHhhhhhhHHHH----HHHHHHHHHHhcCCC-ccccchHH
Confidence 99999999986 544 377776553222222222333333 333333444444322 13345667
Q ss_pred HHHHHHHHhCCCCCc-cccc--cCCCHHHHHHHH
Q psy14941 452 YWIEYVIKYNGAYHL-QSAA--VKLTWYQYYLLD 482 (513)
Q Consensus 452 ~~ie~~~~~~~~~~l-~~~~--~~~~~~~~~~lD 482 (513)
+.||+++..+..+.. +.+- ..|++|...-.+
T Consensus 303 d~id~lat~k~~~~~~~~~lf~vG~~~WKR~v~~ 336 (671)
T COG3563 303 DVIDYLATVKRKNDKLRGELFCVGMSLWKRAVAK 336 (671)
T ss_pred HHHHHHHHHhccccCCCCceEEEehHHhhhhhhc
Confidence 889999887655432 2221 345566555444
No 282
>COG4126 Hydantoin racemase [Amino acid transport and metabolism]
Probab=31.92 E-value=2.3e+02 Score=25.79 Aligned_cols=37 Identities=19% Similarity=0.205 Sum_probs=32.0
Q ss_pred eEeEEcCCCCCChHHHHHHHHHHHHhCCCcEEEEEee
Q psy14941 28 KILAIFPTPAKSHQIIFDTILVELYQRGHDLTVITQY 64 (513)
Q Consensus 28 kIL~~~p~~~~gH~~~~~~la~~L~~rGH~Vt~~~~~ 64 (513)
+||++.|..+.+-.--+...++..+..+-++..++..
T Consensus 2 ~IlvINPNsT~smTe~~~~~a~~v~~~~~~l~~~t~~ 38 (230)
T COG4126 2 RILVINPNSTASMTESMGETARKVASADTELISVTSP 38 (230)
T ss_pred eEEEECCCchHHHHHHHHHHHHhhcCCCceEEEEccC
Confidence 6888999988888888888899888888888888874
No 283
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=31.77 E-value=1.2e+02 Score=30.72 Aligned_cols=41 Identities=7% Similarity=0.130 Sum_probs=33.0
Q ss_pred ceEeEEcCCCCCChHHHHHHHHHHH-HhCCCcEEEEEeecCC
Q psy14941 27 SKILAIFPTPAKSHQIIFDTILVEL-YQRGHDLTVITQYPET 67 (513)
Q Consensus 27 ~kIL~~~p~~~~gH~~~~~~la~~L-~~rGH~Vt~~~~~~~~ 67 (513)
.+|++++..+|.|=..-+..||.++ ..+|+.|.+++.+..+
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R 264 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYR 264 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchh
Confidence 4556577777889999999999876 6789999999986643
No 284
>TIGR02015 BchY chlorophyllide reductase subunit Y. This model represents the Y subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=31.59 E-value=1.7e+02 Score=29.81 Aligned_cols=32 Identities=16% Similarity=0.005 Sum_probs=24.2
Q ss_pred HHhccCCCccEEEEccchhchHHhhhhccCCCEEEEe
Q psy14941 125 SIWNMENKYDLIITEMFLTDAFLVIPYLYKVPYISIA 161 (513)
Q Consensus 125 ~~l~~~~~~Dlvi~d~~~~~~~~~~a~~l~iP~i~~~ 161 (513)
+.++ +.+||++|.... +. .+|+++|||++.+.
T Consensus 349 ~~l~-~~~pDllig~s~---~~-~~A~k~gIP~vr~g 380 (422)
T TIGR02015 349 EAVL-EFEPDLAIGTTP---LV-QFAKEHGIPALYFT 380 (422)
T ss_pred HHHh-hCCCCEEEcCCc---ch-HHHHHcCCCEEEec
Confidence 3444 578999998743 44 38999999998865
No 285
>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3. Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D.
Probab=31.38 E-value=57 Score=34.49 Aligned_cols=69 Identities=16% Similarity=0.122 Sum_probs=37.7
Q ss_pred cHHHHHHcCcceEeecccc-CcHHHHH--HHHHcCcEEEeccCCCCHHHHHHHHHHhc-C---------HHHHHHHHHHH
Q psy14941 370 GITEAVYEGIPVLGIPVFG-DQWANIK--KLESLKAGKLLPYLEITEETVSDALKIVL-S---------PEYKENAEDLG 436 (513)
Q Consensus 370 s~~Eal~~GvP~i~~P~~~-DQ~~na~--~~~~~G~G~~l~~~~~~~~~l~~ai~~ll-~---------~~y~~~a~~~~ 436 (513)
|-+||++.|||.|..=+.| -++.+-. .-...|+-++ +....+.++..+.|.+.| + ...|++++++|
T Consensus 485 TPlE~~a~gVPsITTnLsGFG~~~~~~~~~~~~~GV~Vv-dR~~~n~~e~v~~la~~l~~f~~~~~rqri~~Rn~ae~LS 563 (633)
T PF05693_consen 485 TPLECTAFGVPSITTNLSGFGCWMQEHIEDPEEYGVYVV-DRRDKNYDESVNQLADFLYKFCQLSRRQRIIQRNRAERLS 563 (633)
T ss_dssp HHHHHHHTT--EEEETTBHHHHHHHTTS-HHGGGTEEEE--SSSS-HHHHHHHHHHHHHHHHT--HHHHHHHHHHHHHHG
T ss_pred ChHHHhhcCCceeeccchhHHHHHHHhhccCcCCcEEEE-eCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 5799999999999986532 1121111 1123455444 444556666666666665 3 23677777777
Q ss_pred HHH
Q psy14941 437 TRF 439 (513)
Q Consensus 437 ~~~ 439 (513)
+++
T Consensus 564 ~~~ 566 (633)
T PF05693_consen 564 DLA 566 (633)
T ss_dssp GGG
T ss_pred HhC
Confidence 654
No 286
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=31.31 E-value=96 Score=30.61 Aligned_cols=41 Identities=10% Similarity=0.172 Sum_probs=33.7
Q ss_pred CceEeEEcCCCCCChHHHHHHHHHHHHhC--CCcEEEEEeecCC
Q psy14941 26 CSKILAIFPTPAKSHQIIFDTILVELYQR--GHDLTVITQYPET 67 (513)
Q Consensus 26 ~~kIL~~~p~~~~gH~~~~~~la~~L~~r--GH~Vt~~~~~~~~ 67 (513)
..|||+ +-..+-|++.-+.++.++|+++ +.++++++.....
T Consensus 5 ~~~ILi-i~~~~iGD~vl~~P~l~~Lk~~~P~a~I~~l~~~~~~ 47 (352)
T PRK10422 5 FRRILI-IKMRFHGDMLLTTPVISSLKKNYPDAKIDVLLYQDTI 47 (352)
T ss_pred CceEEE-EEecccCceeeHHHHHHHHHHHCCCCeEEEEeccChH
Confidence 468994 4556789999999999999987 7899999876543
No 287
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=31.29 E-value=84 Score=26.04 Aligned_cols=11 Identities=9% Similarity=0.362 Sum_probs=5.6
Q ss_pred CHHHHHHHHHH
Q psy14941 474 TWYQYYLLDIA 484 (513)
Q Consensus 474 ~~~~~~~lDv~ 484 (513)
+|+--|+.-++
T Consensus 25 sffsthm~tIL 35 (189)
T PF05568_consen 25 SFFSTHMYTIL 35 (189)
T ss_pred cHHHHHHHHHH
Confidence 46555554443
No 288
>TIGR00460 fmt methionyl-tRNA formyltransferase. The top-scoring characterized proteins other than methionyl-tRNA formyltransferase (fmt) itself are formyltetrahydrofolate dehydrogenases. The mitochondrial methionyl-tRNA formyltransferases are so divergent that, in a multiple alignment of bacterial fmt, mitochondrial fmt, and formyltetrahydrofolate dehydrogenases, the mitochondrial fmt appears the most different. However, because both bacterial and mitochondrial fmt are included in the seed alignment, all credible fmt sequences score higher than any non-fmt sequence. This enzyme modifies Met on initiator tRNA to f-Met.
Probab=31.16 E-value=96 Score=30.14 Aligned_cols=32 Identities=25% Similarity=0.434 Sum_probs=22.0
Q ss_pred eEeEEcCCCCCChHHHHHHHHHHHHhCCCcEEEEEeec
Q psy14941 28 KILAIFPTPAKSHQIIFDTILVELYQRGHDLTVITQYP 65 (513)
Q Consensus 28 kIL~~~p~~~~gH~~~~~~la~~L~~rGH~Vt~~~~~~ 65 (513)
||+ ++..+ .......++|.++||+|..+.+.+
T Consensus 2 kIv-f~Gs~-----~~a~~~L~~L~~~~~~i~~Vvt~p 33 (313)
T TIGR00460 2 RIV-FFGTP-----TFSLPVLEELREDNFEVVGVVTQP 33 (313)
T ss_pred EEE-EECCC-----HHHHHHHHHHHhCCCcEEEEEcCC
Confidence 676 54433 245777889999999988666544
No 289
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=31.15 E-value=2e+02 Score=28.20 Aligned_cols=39 Identities=10% Similarity=0.228 Sum_probs=32.1
Q ss_pred eEeEEcCCCCCChHHHHHHHHHHHHhC--CCcEEEEEeecCC
Q psy14941 28 KILAIFPTPAKSHQIIFDTILVELYQR--GHDLTVITQYPET 67 (513)
Q Consensus 28 kIL~~~p~~~~gH~~~~~~la~~L~~r--GH~Vt~~~~~~~~ 67 (513)
||| ++-..+-|++.-+.++.++|+++ +.++++++.....
T Consensus 1 rIL-ii~~~~iGD~vl~tp~l~~Lk~~~P~a~I~~l~~~~~~ 41 (344)
T TIGR02201 1 RIL-LIKLRHHGDMLLTTPVISSLKKNYPDAKIDVLLYQETI 41 (344)
T ss_pred CEE-EEEeccccceeeHHHHHHHHHHHCCCCEEEEEECcChH
Confidence 688 44556889999999999999986 7889999886543
No 290
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=30.94 E-value=87 Score=27.04 Aligned_cols=38 Identities=18% Similarity=0.317 Sum_probs=32.9
Q ss_pred ceEeEEcCCCCCChHHHHHHHHHHHHhCCCcEEEEEee
Q psy14941 27 SKILAIFPTPAKSHQIIFDTILVELYQRGHDLTVITQY 64 (513)
Q Consensus 27 ~kIL~~~p~~~~gH~~~~~~la~~L~~rGH~Vt~~~~~ 64 (513)
.+|+.++.+-..|=.--+.++++.|.+||+.|..+=..
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L~~~G~rVa~iKH~ 39 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKLKARGYRVATVKHA 39 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHHHHhCCcEEEEEEec
Confidence 46887888878899999999999999999999988653
No 291
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=30.84 E-value=98 Score=31.11 Aligned_cols=41 Identities=5% Similarity=0.071 Sum_probs=32.8
Q ss_pred ceEeEEcCCCCCChHHHHHHHHHHHHh----CCCcEEEEEeecCC
Q psy14941 27 SKILAIFPTPAKSHQIIFDTILVELYQ----RGHDLTVITQYPET 67 (513)
Q Consensus 27 ~kIL~~~p~~~~gH~~~~~~la~~L~~----rGH~Vt~~~~~~~~ 67 (513)
.++++++...|-|=.--...+|..+.. +|+.|.+++.+..+
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R 218 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYR 218 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCcc
Confidence 355557777788999999999999873 58999999987653
No 292
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=30.64 E-value=1.2e+02 Score=29.61 Aligned_cols=42 Identities=17% Similarity=0.297 Sum_probs=36.1
Q ss_pred cCceEeEEcCCCCCChHHHHHHHHHHHHhCCCcEEEEEeecC
Q psy14941 25 QCSKILAIFPTPAKSHQIIFDTILVELYQRGHDLTVITQYPE 66 (513)
Q Consensus 25 ~~~kIL~~~p~~~~gH~~~~~~la~~L~~rGH~Vt~~~~~~~ 66 (513)
+..||+++..-++.|=......||..|+++|++|.++..+..
T Consensus 29 ~~~~ii~v~gkgG~GKSt~a~nLa~~la~~g~rVllid~D~~ 70 (329)
T cd02033 29 KKTQIIAIYGKGGIGKSFTLANLSYMMAQQGKRVLLIGCDPK 70 (329)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEeeec
Confidence 557787788888889999999999999999999999977543
No 293
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=30.59 E-value=66 Score=32.86 Aligned_cols=36 Identities=17% Similarity=0.251 Sum_probs=26.4
Q ss_pred hHHHHhccCCCccEEEEccchhchHHhhhhccCCCEEEEeC
Q psy14941 122 NMKSIWNMENKYDLIITEMFLTDAFLVIPYLYKVPYISIAS 162 (513)
Q Consensus 122 ~l~~~l~~~~~~Dlvi~d~~~~~~~~~~a~~l~iP~i~~~~ 162 (513)
++.+.++ +.+||++|.+... . .+|+++|+|++.++.
T Consensus 362 el~~~i~-~~~pdliig~~~~---~-~~a~~~~ip~i~~~~ 397 (428)
T cd01965 362 DLESLAK-EEPVDLLIGNSHG---R-YLARDLGIPLVRVGF 397 (428)
T ss_pred HHHHHhh-ccCCCEEEECchh---H-HHHHhcCCCEEEecC
Confidence 3445555 6789999998763 3 489999999986653
No 294
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=30.58 E-value=2.7e+02 Score=27.48 Aligned_cols=31 Identities=19% Similarity=0.352 Sum_probs=26.4
Q ss_pred ccCCCceEEeccCCccc---HHHHHHcCcceEee
Q psy14941 354 FAHPNMKLFISHGGLLG---ITEAVYEGIPVLGI 384 (513)
Q Consensus 354 L~h~~~~~~IthgG~~s---~~Eal~~GvP~i~~ 384 (513)
+..-+-|++|++||.-| ...|...|+|+++.
T Consensus 87 ~~~~kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i~ 120 (352)
T PRK12446 87 IRKLKPDVIFSKGGFVSVPVVIGGWLNRVPVLLH 120 (352)
T ss_pred HHhcCCCEEEecCchhhHHHHHHHHHcCCCEEEE
Confidence 44566789999999986 89999999999885
No 295
>COG2210 Peroxiredoxin family protein [General function prediction only]
Probab=30.55 E-value=1e+02 Score=25.62 Aligned_cols=38 Identities=16% Similarity=0.067 Sum_probs=30.3
Q ss_pred eEeEEcCCCCCChHHHHHHHHHHHHhCCCcEEEEEeec
Q psy14941 28 KILAIFPTPAKSHQIIFDTILVELYQRGHDLTVITQYP 65 (513)
Q Consensus 28 kIL~~~p~~~~gH~~~~~~la~~L~~rGH~Vt~~~~~~ 65 (513)
|.-+++.++...-+.+..-++...+.+|++|+++.++.
T Consensus 4 k~~IIl~SG~~dk~~~a~iias~A~A~G~EV~VF~Tfw 41 (137)
T COG2210 4 KLGIILASGTLDKAYAALIIASGAAAMGYEVTVFFTFW 41 (137)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHHcCCeEEEEEeHH
Confidence 33344555667788899999999999999999998854
No 296
>COG2861 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.54 E-value=1.1e+02 Score=28.13 Aligned_cols=36 Identities=14% Similarity=-0.010 Sum_probs=23.4
Q ss_pred hHHHHhccCCCccEEEEccchhch--HHhhhhccCCCEEEE
Q psy14941 122 NMKSIWNMENKYDLIITEMFLTDA--FLVIPYLYKVPYISI 160 (513)
Q Consensus 122 ~l~~~l~~~~~~Dlvi~d~~~~~~--~~~~a~~l~iP~i~~ 160 (513)
.+++.|+ +-++.+.|.-.... ...+|+..|||++.=
T Consensus 142 ~~m~~Lk---~r~l~flDs~T~a~S~a~~iAk~~gVp~~~r 179 (250)
T COG2861 142 KLMEALK---ERGLYFLDSGTIANSLAGKIAKEIGVPVIKR 179 (250)
T ss_pred HHHHHHH---HCCeEEEcccccccchhhhhHhhcCCceeee
Confidence 3444454 47888999865432 224788999997753
No 297
>PRK14098 glycogen synthase; Provisional
Probab=30.43 E-value=67 Score=33.47 Aligned_cols=27 Identities=7% Similarity=0.128 Sum_probs=24.2
Q ss_pred CChHHHHHHHHHHHHhCCCcEEEEEee
Q psy14941 38 KSHQIIFDTILVELYQRGHDLTVITQY 64 (513)
Q Consensus 38 ~gH~~~~~~la~~L~~rGH~Vt~~~~~ 64 (513)
.|=-..+.+|.++|+++||+|.++.|.
T Consensus 22 Ggl~dv~~~Lp~al~~~g~~v~v~~P~ 48 (489)
T PRK14098 22 SALADFMASFPQALEEEGFEARIMMPK 48 (489)
T ss_pred chHHHHHHHHHHHHHHCCCeEEEEcCC
Confidence 477788999999999999999999984
No 298
>PRK03094 hypothetical protein; Provisional
Probab=30.30 E-value=43 Score=24.95 Aligned_cols=20 Identities=15% Similarity=0.326 Sum_probs=16.3
Q ss_pred HHHHHHHHHhCCCcEEEEEe
Q psy14941 44 FDTILVELYQRGHDLTVITQ 63 (513)
Q Consensus 44 ~~~la~~L~~rGH~Vt~~~~ 63 (513)
+..+.++|.++||+|.=+..
T Consensus 10 Ls~i~~~L~~~GYeVv~l~~ 29 (80)
T PRK03094 10 LTDVQQALKQKGYEVVQLRS 29 (80)
T ss_pred cHHHHHHHHHCCCEEEecCc
Confidence 45689999999999986654
No 299
>KOG0780|consensus
Probab=30.28 E-value=1e+02 Score=30.67 Aligned_cols=42 Identities=2% Similarity=0.056 Sum_probs=36.1
Q ss_pred ceEeEEcCCCCCChHHHHHHHHHHHHhCCCcEEEEEeecCCc
Q psy14941 27 SKILAIFPTPAKSHQIIFDTILVELYQRGHDLTVITQYPETL 68 (513)
Q Consensus 27 ~kIL~~~p~~~~gH~~~~~~la~~L~~rGH~Vt~~~~~~~~~ 68 (513)
.+|+.++..-+.|-.-.+..+|-.+.++|..|-+++.+.++.
T Consensus 101 psVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRa 142 (483)
T KOG0780|consen 101 PSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRA 142 (483)
T ss_pred CcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeeccccc
Confidence 456657787789999999999999999999999999877643
No 300
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=29.83 E-value=4e+02 Score=23.87 Aligned_cols=155 Identities=12% Similarity=0.012 Sum_probs=81.7
Q ss_pred CCceEEEEeCcccccCCCCHHHHHHHHHHHhcCCCeEEEEEcCCC---CCCCCCCCcEEEecCCCccccccCCCceEEec
Q psy14941 288 HNGVIYFSMGSMLKTSSFPPDKFKAFLKAFSKIPQRVLWKFEDND---TSIFKPYKNIRTSSWMPQRDIFAHPNMKLFIS 364 (513)
Q Consensus 288 ~~~~v~vs~Gs~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~~~~~nv~~~~~~pq~~lL~h~~~~~~It 364 (513)
++++++|.-|.++ ...+..|.+.+..+.+. .++. +.+..+..++.......+...+ ..++++|.
T Consensus 10 ~k~vLVIGgG~va----------~~ka~~Ll~~ga~V~VI-s~~~~~~l~~l~~~~~i~~~~~~~~~~~l--~~adlVia 76 (202)
T PRK06718 10 NKRVVIVGGGKVA----------GRRAITLLKYGAHIVVI-SPELTENLVKLVEEGKIRWKQKEFEPSDI--VDAFLVIA 76 (202)
T ss_pred CCEEEEECCCHHH----------HHHHHHHHHCCCeEEEE-cCCCCHHHHHHHhCCCEEEEecCCChhhc--CCceEEEE
Confidence 5677777766654 33344444455555444 3221 1110101235544444444445 56788888
Q ss_pred cCCcccHHHHH----HcCcceEeeccccCcHHHHH-----HHHHcCcEEEeccCC---CCHHHHHHHHHHhc-C--HHHH
Q psy14941 365 HGGLLGITEAV----YEGIPVLGIPVFGDQWANIK-----KLESLKAGKLLPYLE---ITEETVSDALKIVL-S--PEYK 429 (513)
Q Consensus 365 hgG~~s~~Eal----~~GvP~i~~P~~~DQ~~na~-----~~~~~G~G~~l~~~~---~~~~~l~~ai~~ll-~--~~y~ 429 (513)
--+...+.+.+ ..|+++-+. |.+..+. .+.+-++-+.+..+. .-+..|++.|.+++ . ..|-
T Consensus 77 aT~d~elN~~i~~~a~~~~lvn~~----d~~~~~~f~~Pa~~~~g~l~iaIsT~G~sP~la~~lr~~ie~~~~~~~~~~~ 152 (202)
T PRK06718 77 ATNDPRVNEQVKEDLPENALFNVI----TDAESGNVVFPSALHRGKLTISVSTDGASPKLAKKIRDELEALYDESYESYI 152 (202)
T ss_pred cCCCHHHHHHHHHHHHhCCcEEEC----CCCccCeEEEeeEEEcCCeEEEEECCCCChHHHHHHHHHHHHHcchhHHHHH
Confidence 77765544443 356655443 4333332 233334444444332 34467888888877 2 5677
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHHh
Q psy14941 430 ENAEDLGTRFRDRPQSPLEVAIYWIEYVIKY 460 (513)
Q Consensus 430 ~~a~~~~~~~~~~~~~~~~~a~~~ie~~~~~ 460 (513)
+.+.++.+.++..-.++.++-.. .+.++..
T Consensus 153 ~~~~~~R~~~k~~~~~~~~R~~~-~~~~~~~ 182 (202)
T PRK06718 153 DFLYECRQKIKELQIEKREKQIL-LQEVLSS 182 (202)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHH-HHHHhhh
Confidence 88888888887764344444322 3555543
No 301
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=29.77 E-value=1.2e+02 Score=28.76 Aligned_cols=41 Identities=5% Similarity=0.074 Sum_probs=35.8
Q ss_pred CceEeEEcCCCCCChHHHHHHHHHHHHhCCCcEEEEEeecC
Q psy14941 26 CSKILAIFPTPAKSHQIIFDTILVELYQRGHDLTVITQYPE 66 (513)
Q Consensus 26 ~~kIL~~~p~~~~gH~~~~~~la~~L~~rGH~Vt~~~~~~~ 66 (513)
..++++++..+|-|=..-...||..|+++|++|.++..+..
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~ 111 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTF 111 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCC
Confidence 35777788888999999999999999999999999998754
No 302
>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=29.54 E-value=75 Score=29.86 Aligned_cols=30 Identities=20% Similarity=0.210 Sum_probs=24.7
Q ss_pred CCceEEeccCCcccHHHHHH----cCcceEeecc
Q psy14941 357 PNMKLFISHGGLLGITEAVY----EGIPVLGIPV 386 (513)
Q Consensus 357 ~~~~~~IthgG~~s~~Eal~----~GvP~i~~P~ 386 (513)
..++++|+=||-||++.|+. .++|++++-.
T Consensus 32 ~~~D~vi~iGGDGT~L~a~~~~~~~~iPilGIN~ 65 (259)
T PRK00561 32 DGADYLFVLGGDGFFVSTAANYNCAGCKVVGINT 65 (259)
T ss_pred CCCCEEEEECCcHHHHHHHHHhcCCCCcEEEEec
Confidence 34789999999999998875 5789998853
No 303
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=29.36 E-value=61 Score=31.63 Aligned_cols=40 Identities=10% Similarity=0.137 Sum_probs=27.8
Q ss_pred HhHHHHhccCCCccEEEEccchhchHHh---------hhhccCCCEEEEe
Q psy14941 121 ENMKSIWNMENKYDLIITEMFLTDAFLV---------IPYLYKVPYISIA 161 (513)
Q Consensus 121 ~~l~~~l~~~~~~Dlvi~d~~~~~~~~~---------~a~~l~iP~i~~~ 161 (513)
..+.+.++ ..+||++|+...|..+-++ +.+.++||.+.-.
T Consensus 70 ~~i~~mv~-~~~pD~viaGPaFnagrYG~acg~v~~aV~e~~~IP~vtaM 118 (349)
T PF07355_consen 70 KKILEMVK-KLKPDVVIAGPAFNAGRYGVACGEVAKAVQEKLGIPVVTAM 118 (349)
T ss_pred HHHHHHHH-hcCCCEEEEcCCcCCchHHHHHHHHHHHHHHhhCCCEEEEe
Confidence 34556676 7889999999876643322 4567999977543
No 304
>COG1553 DsrE Uncharacterized conserved protein involved in intracellular sulfur reduction [Inorganic ion transport and metabolism]
Probab=29.29 E-value=1.3e+02 Score=24.58 Aligned_cols=36 Identities=11% Similarity=0.117 Sum_probs=25.3
Q ss_pred eEeEEcCCCCCChH--HHHHHHHHHHHhCC-CcEEEEEe
Q psy14941 28 KILAIFPTPAKSHQ--IIFDTILVELYQRG-HDLTVITQ 63 (513)
Q Consensus 28 kIL~~~p~~~~gH~--~~~~~la~~L~~rG-H~Vt~~~~ 63 (513)
|+.+++..|.+|+- .-..++|++|.+.| |+|.++--
T Consensus 2 ~~~Ivvt~ppYg~q~a~~A~~fA~all~~gh~~v~iFly 40 (126)
T COG1553 2 KYTIVVTGPPYGTESAFSALRFAEALLEQGHELVRLFLY 40 (126)
T ss_pred eEEEEEecCCCccHHHHHHHHHHHHHHHcCCeEEEEEEe
Confidence 45556677777754 56778999999997 55665543
No 305
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=29.21 E-value=1.7e+02 Score=25.97 Aligned_cols=44 Identities=16% Similarity=0.265 Sum_probs=29.2
Q ss_pred ChHHHHHHHHHHHHhCCCcEEEEEeecCCcc---ccCCeEEEEecCc
Q psy14941 39 SHQIIFDTILVELYQRGHDLTVITQYPETLV---HYERMKVLDIKGT 82 (513)
Q Consensus 39 gH~~~~~~la~~L~~rGH~Vt~~~~~~~~~~---~~~~~~~i~~~~~ 82 (513)
|==.....|+..|+++||+|++.+....... .-.+.+.+.++.+
T Consensus 18 GfET~ve~L~~~l~~~g~~v~Vyc~~~~~~~~~~~y~gv~l~~i~~~ 64 (185)
T PF09314_consen 18 GFETFVEELAPRLVSKGIDVTVYCRSDYYPYKEFEYNGVRLVYIPAP 64 (185)
T ss_pred cHHHHHHHHHHHHhcCCceEEEEEccCCCCCCCcccCCeEEEEeCCC
Confidence 4445677888999999999999987543321 1344555665533
No 306
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=29.21 E-value=1.4e+02 Score=31.40 Aligned_cols=42 Identities=7% Similarity=0.188 Sum_probs=31.9
Q ss_pred cCceEeEEcCCCCCChHHHHHHHHHHHHhC--CCcEEEEEeecC
Q psy14941 25 QCSKILAIFPTPAKSHQIIFDTILVELYQR--GHDLTVITQYPE 66 (513)
Q Consensus 25 ~~~kIL~~~p~~~~gH~~~~~~la~~L~~r--GH~Vt~~~~~~~ 66 (513)
...++++++...|.|=..-+..||..+..+ |++|.+++.+..
T Consensus 348 ~~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDty 391 (559)
T PRK12727 348 ERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQ 391 (559)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccc
Confidence 345566577767888888889999988876 578998887553
No 307
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=29.14 E-value=2.1e+02 Score=24.69 Aligned_cols=29 Identities=24% Similarity=0.420 Sum_probs=23.0
Q ss_pred CCceEEeccCCc------ccHHHHHHcCcceEeec
Q psy14941 357 PNMKLFISHGGL------LGITEAVYEGIPVLGIP 385 (513)
Q Consensus 357 ~~~~~~IthgG~------~s~~Eal~~GvP~i~~P 385 (513)
.+..++++|+|- +.+.||...++|||++.
T Consensus 62 g~~~v~~~t~GpG~~n~~~~l~~A~~~~~Pvl~I~ 96 (164)
T cd07039 62 GKLGVCLGSSGPGAIHLLNGLYDAKRDRAPVLAIA 96 (164)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 345677777775 46899999999999996
No 308
>PF11628 TCR_zetazeta: T-cell surface glycoprotein CD3 zeta chain; InterPro: IPR021663 The TCR complex of T-lymphocytes consists of either a TCR alpha/beta or TCR gamma/delta heterodimer co-expressed at the cell surface with the invariant subunits of CD3 labelled gamma, delta, epsilon, zeta, and eta []. The zeta subunit forms either homodimers or heterodimers with eta [], but eta homodimers have not been observed. The structure of the zetazeta transmembrane dimer consists of a left-handed coiled coil with polar contacts. Two aspartic acids are critical for zetazeta dimerisation and assembly with TCR []. The high affinity immunoglobulin epsilon receptor (IgE Fc receptor) subunit gamma associates with a variety of FcR alpha chains to form a functional signaling complex. The gamma subunit has a critical role in allowing the IgE Fc receptor to reach the cell surface and regulates several aspects of the immune response []. This family includes both CD3 zeta subunits and IgE Fc receptor gamma subunits. The gamma chain of the high affinity Fc receptor for IgE has significant structural homology to CD3 zeta and the related CD3 eta subunit and can facilitate T cell receptor expression and signaling in the absence of CD3 zeta and CD3 eta [].; PDB: 2HAC_B.
Probab=29.05 E-value=1.1e+02 Score=18.35 Aligned_cols=18 Identities=22% Similarity=0.436 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy14941 479 YLLDIALVLIVGLVSVCF 496 (513)
Q Consensus 479 ~~lDv~~~~~~~~~~~~~ 496 (513)
|-||.++++..+++-.+|
T Consensus 6 YiLDgiL~iYgiiiT~L~ 23 (33)
T PF11628_consen 6 YILDGILFIYGIIITALY 23 (33)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred eeHHHHHHHHHHHHHHHH
Confidence 778988777665544443
No 309
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=29.05 E-value=1.1e+02 Score=26.39 Aligned_cols=38 Identities=8% Similarity=0.035 Sum_probs=32.0
Q ss_pred EeEEcCCCCCChHHHHHHHHHHHHhCCCcEEEEEeecC
Q psy14941 29 ILAIFPTPAKSHQIIFDTILVELYQRGHDLTVITQYPE 66 (513)
Q Consensus 29 IL~~~p~~~~gH~~~~~~la~~L~~rGH~Vt~~~~~~~ 66 (513)
|.+..+-+|-|=......||..|+++|++|.++-.+..
T Consensus 2 i~v~s~kgG~GKTt~a~~LA~~la~~g~~vllvD~D~q 39 (169)
T cd02037 2 IAVMSGKGGVGKSTVAVNLALALAKLGYKVGLLDADIY 39 (169)
T ss_pred EEEecCCCcCChhHHHHHHHHHHHHcCCcEEEEeCCCC
Confidence 45567778889999999999999999999999876543
No 310
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=28.86 E-value=1.4e+02 Score=26.06 Aligned_cols=38 Identities=16% Similarity=0.199 Sum_probs=31.7
Q ss_pred EeEEcCCCCCChHHHHHHHHHHHHhCCCcEEEEEeecC
Q psy14941 29 ILAIFPTPAKSHQIIFDTILVELYQRGHDLTVITQYPE 66 (513)
Q Consensus 29 IL~~~p~~~~gH~~~~~~la~~L~~rGH~Vt~~~~~~~ 66 (513)
|.+...-+|-|=..-+..||..|+++|++|.++-.++.
T Consensus 1 I~v~~~kGG~GKTt~a~~la~~la~~g~~VlliD~D~~ 38 (195)
T PF01656_consen 1 IAVTSGKGGVGKTTIAANLAQALARKGKKVLLIDLDPQ 38 (195)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEESTT
T ss_pred CEEEcCCCCccHHHHHHHHHhccccccccccccccCcc
Confidence 45567778889999999999999999999999988654
No 311
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=28.80 E-value=5.5e+02 Score=24.94 Aligned_cols=37 Identities=16% Similarity=0.140 Sum_probs=23.9
Q ss_pred HHhccCCCccEEEEccchhchHHhhhhccCCCEEEEeCC
Q psy14941 125 SIWNMENKYDLIITEMFLTDAFLVIPYLYKVPYISIASS 163 (513)
Q Consensus 125 ~~l~~~~~~Dlvi~d~~~~~~~~~~a~~l~iP~i~~~~~ 163 (513)
+.+. ..++|+++.-.. +.+.-.+++..+||.|+..-.
T Consensus 82 rql~-~~~~dviv~i~t-p~Aq~~~s~~~~iPVV~aavt 118 (322)
T COG2984 82 RQLV-GDKPDVIVAIAT-PAAQALVSATKTIPVVFAAVT 118 (322)
T ss_pred HHhh-cCCCcEEEecCC-HHHHHHHHhcCCCCEEEEccC
Confidence 3344 578999998654 333323667778998876544
No 312
>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans
Probab=28.54 E-value=3e+02 Score=25.18 Aligned_cols=34 Identities=15% Similarity=0.053 Sum_probs=21.8
Q ss_pred CCCccEEEEccchhc-hHHhhhhccCCCEEEEeCC
Q psy14941 130 ENKYDLIITEMFLTD-AFLVIPYLYKVPYISIASS 163 (513)
Q Consensus 130 ~~~~Dlvi~d~~~~~-~~~~~a~~l~iP~i~~~~~ 163 (513)
..++|.+|....... ..+.-+...|+|+|.+...
T Consensus 53 ~~~vdgiIi~~~~~~~~~~~~l~~~~ipvV~~~~~ 87 (265)
T cd06299 53 SQRVDGIIVVPHEQSAEQLEDLLKRGIPVVFVDRE 87 (265)
T ss_pred hcCCCEEEEcCCCCChHHHHHHHhCCCCEEEEecc
Confidence 467998887653222 2234556679999988764
No 313
>COG2327 WcaK Polysaccharide pyruvyl transferase family protein [Cell wall/membrane/envelope biogenesis]
Probab=28.52 E-value=3.2e+02 Score=27.39 Aligned_cols=86 Identities=19% Similarity=0.115 Sum_probs=59.5
Q ss_pred CCcEEEecCCCc----cccccCCCceEEeccCCcccHHHHHHcCcceEeeccccCcHHHHHHHHHcCcE-EEeccCCCCH
Q psy14941 339 YKNIRTSSWMPQ----RDIFAHPNMKLFISHGGLLGITEAVYEGIPVLGIPVFGDQWANIKKLESLKAG-KLLPYLEITE 413 (513)
Q Consensus 339 ~~nv~~~~~~pq----~~lL~h~~~~~~IthgG~~s~~Eal~~GvP~i~~P~~~DQ~~na~~~~~~G~G-~~l~~~~~~~ 413 (513)
+++++..+ .++ ..++ .+|+++|. .=+-++.=|++.|+|.+++ +=|+.+...+++.|.- ..++..+++.
T Consensus 265 ~~~i~~~~-d~~~~~~~~~l--~~~dl~Vg-~R~HsaI~al~~g~p~i~i---~Y~~K~~~l~~~~gl~~~~~~i~~~~~ 337 (385)
T COG2327 265 SAEILVSS-DEYAEELGGIL--AACDLIVG-MRLHSAIMALAFGVPAIAI---AYDPKVRGLMQDLGLPGFAIDIDPLDA 337 (385)
T ss_pred ccceEeec-chHHHHHHHHh--ccCceEEe-ehhHHHHHHHhcCCCeEEE---eecHHHHHHHHHcCCCcccccCCCCch
Confidence 35555544 233 2344 56676664 2345778899999999998 3456666788888874 5567778999
Q ss_pred HHHHHHHHHhc--CHHHHHH
Q psy14941 414 ETVSDALKIVL--SPEYKEN 431 (513)
Q Consensus 414 ~~l~~ai~~ll--~~~y~~~ 431 (513)
+.+.+...+.+ +++.+++
T Consensus 338 ~~l~~~~~e~~~~~~~~~~~ 357 (385)
T COG2327 338 EILSAVVLERLTKLDELRER 357 (385)
T ss_pred HHHHHHHHHHHhccHHHHhh
Confidence 99999998888 5665555
No 314
>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi
Probab=28.44 E-value=3.1e+02 Score=25.27 Aligned_cols=34 Identities=21% Similarity=0.141 Sum_probs=22.0
Q ss_pred CCCccEEEEccchh-chHHhhhhccCCCEEEEeCC
Q psy14941 130 ENKYDLIITEMFLT-DAFLVIPYLYKVPYISIASS 163 (513)
Q Consensus 130 ~~~~Dlvi~d~~~~-~~~~~~a~~l~iP~i~~~~~ 163 (513)
+.++|.+|...... ...+..+...|+|+|.+...
T Consensus 53 ~~~vdgii~~~~~~~~~~~~~~~~~~ipvV~~~~~ 87 (268)
T cd06270 53 ERRCDALILHSKALSDDELIELAAQVPPLVLINRH 87 (268)
T ss_pred HcCCCEEEEecCCCCHHHHHHHhhCCCCEEEEecc
Confidence 46799888754322 22134566789999988653
No 315
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=28.41 E-value=1.3e+02 Score=28.25 Aligned_cols=42 Identities=14% Similarity=0.161 Sum_probs=36.1
Q ss_pred cCceEeEEcCCCCCChHHHHHHHHHHHHhCCCcEEEEEeecC
Q psy14941 25 QCSKILAIFPTPAKSHQIIFDTILVELYQRGHDLTVITQYPE 66 (513)
Q Consensus 25 ~~~kIL~~~p~~~~gH~~~~~~la~~L~~rGH~Vt~~~~~~~ 66 (513)
...+++++...|+.|......+.+.+.+++|..|.+++....
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~ 62 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEES 62 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecCC
Confidence 344555589999999999999999999999999999998653
No 316
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=28.37 E-value=58 Score=28.78 Aligned_cols=38 Identities=18% Similarity=0.210 Sum_probs=28.9
Q ss_pred ceEeEEcCCCCCChHHHHHHHHHHHHhCCCcEEEEEeecC
Q psy14941 27 SKILAIFPTPAKSHQIIFDTILVELYQRGHDLTVITQYPE 66 (513)
Q Consensus 27 ~kIL~~~p~~~~gH~~~~~~la~~L~~rGH~Vt~~~~~~~ 66 (513)
.||++.++ |.+-..-...+.++|.++|++|.++.+...
T Consensus 2 k~Ill~vt--Gsiaa~~~~~li~~L~~~g~~V~vv~T~~A 39 (182)
T PRK07313 2 KNILLAVS--GSIAAYKAADLTSQLTKRGYQVTVLMTKAA 39 (182)
T ss_pred CEEEEEEe--ChHHHHHHHHHHHHHHHCCCEEEEEEChhH
Confidence 46774443 346666789999999999999998887553
No 317
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=28.19 E-value=16 Score=32.02 Aligned_cols=33 Identities=30% Similarity=0.529 Sum_probs=23.6
Q ss_pred cCCCceEEeccCCcccHHHHHHcCcceEeecccc
Q psy14941 355 AHPNMKLFISHGGLLGITEAVYEGIPVLGIPVFG 388 (513)
Q Consensus 355 ~h~~~~~~IthgG~~s~~Eal~~GvP~i~~P~~~ 388 (513)
.+..++++|+.||...+..... ++|++-+|..+
T Consensus 31 ~~~g~dViIsRG~ta~~lr~~~-~iPVV~I~~s~ 63 (176)
T PF06506_consen 31 ESEGADVIISRGGTAELLRKHV-SIPVVEIPISG 63 (176)
T ss_dssp TTTT-SEEEEEHHHHHHHHCC--SS-EEEE---H
T ss_pred HhcCCeEEEECCHHHHHHHHhC-CCCEEEECCCH
Confidence 4688999999999888888877 99999999765
No 318
>COG0223 Fmt Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis]
Probab=28.04 E-value=92 Score=30.06 Aligned_cols=35 Identities=26% Similarity=0.517 Sum_probs=24.2
Q ss_pred ceEeEEcCCCCCChHHHHHHHHHHHHhCCCcEEEEEeecCC
Q psy14941 27 SKILAIFPTPAKSHQIIFDTILVELYQRGHDLTVITQYPET 67 (513)
Q Consensus 27 ~kIL~~~p~~~~gH~~~~~~la~~L~~rGH~Vt~~~~~~~~ 67 (513)
.||+ |+.++. +.....++|.+.||+|.-+.+.+.+
T Consensus 2 mkiv-F~GTp~-----fa~~~L~~L~~~~~eivaV~Tqpdk 36 (307)
T COG0223 2 MRIV-FFGTPE-----FAVPSLEALIEAGHEIVAVVTQPDK 36 (307)
T ss_pred cEEE-EEcCch-----hhHHHHHHHHhCCCceEEEEeCCCC
Confidence 4776 656553 4566778888899998876665544
No 319
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=27.94 E-value=66 Score=22.96 Aligned_cols=22 Identities=18% Similarity=0.008 Sum_probs=17.7
Q ss_pred HHHHHHHHHhCCCcEEEEEeec
Q psy14941 44 FDTILVELYQRGHDLTVITQYP 65 (513)
Q Consensus 44 ~~~la~~L~~rGH~Vt~~~~~~ 65 (513)
-+..|..|+++|++|+++-..+
T Consensus 8 Gl~aA~~L~~~g~~v~v~E~~~ 29 (68)
T PF13450_consen 8 GLAAAYYLAKAGYRVTVFEKND 29 (68)
T ss_dssp HHHHHHHHHHTTSEEEEEESSS
T ss_pred HHHHHHHHHHCCCcEEEEecCc
Confidence 3567889999999999987643
No 320
>cd06316 PBP1_ABC_sugar_binding_like_7 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=27.88 E-value=2.5e+02 Score=26.41 Aligned_cols=35 Identities=14% Similarity=0.075 Sum_probs=23.5
Q ss_pred eEeEEcCCCCCChHHHH-HHHHHHHHhCCCcEEEEE
Q psy14941 28 KILAIFPTPAKSHQIIF-DTILVELYQRGHDLTVIT 62 (513)
Q Consensus 28 kIL~~~p~~~~gH~~~~-~~la~~L~~rGH~Vt~~~ 62 (513)
||.+++|.....++..+ ..+.+++.++|.+++++.
T Consensus 1 ~i~~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~ 36 (294)
T cd06316 1 KAAIVMHTSGSDWSNAQVRGAKDEFAKLGIEVVATT 36 (294)
T ss_pred CeEEEecCCCChHHHHHHHHHHHHHHHcCCEEEEec
Confidence 57767776554555444 357788889999987543
No 321
>PRK09739 hypothetical protein; Provisional
Probab=27.73 E-value=1.2e+02 Score=27.15 Aligned_cols=39 Identities=18% Similarity=0.406 Sum_probs=27.4
Q ss_pred CceEeEEcCCCCCCh--HHHHHHHHHHHHhCCCcEEEEEee
Q psy14941 26 CSKILAIFPTPAKSH--QIIFDTILVELYQRGHDLTVITQY 64 (513)
Q Consensus 26 ~~kIL~~~p~~~~gH--~~~~~~la~~L~~rGH~Vt~~~~~ 64 (513)
..|||++..+|..+- ......+++++.++||+|+++--.
T Consensus 3 mmkiliI~~sp~~~s~s~~l~~~~~~~~~~~g~~v~~~dL~ 43 (199)
T PRK09739 3 SMRIYLVWAHPRHDSLTAKVAEAIHQRAQERGHQVEELDLY 43 (199)
T ss_pred CceEEEEEcCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEhh
Confidence 468998888885432 224566777788899999977643
No 322
>TIGR03446 mycothiol_Mca mycothiol conjugate amidase Mca. Mycobacterium tuberculosis, Corynebacterium glutamicum, and related species use the thiol mycothiol in place of glutathione. This enzyme, homologous to the (dispensible) MshB enzyme of mycothiol biosynthesis, is described as an amidase that acts on conjugates to mycothiol. It is a detoxification enzyme.
Probab=27.51 E-value=1e+02 Score=29.39 Aligned_cols=37 Identities=19% Similarity=0.318 Sum_probs=27.3
Q ss_pred ceEeEEcCCCCCChHHHHHHHHHHHHhCCCcEEEEEee
Q psy14941 27 SKILAIFPTPAKSHQIIFDTILVELYQRGHDLTVITQY 64 (513)
Q Consensus 27 ~kIL~~~p~~~~gH~~~~~~la~~L~~rGH~Vt~~~~~ 64 (513)
.|||++.++|-- =...+-.....++++||+|++++-.
T Consensus 1 ~rvL~V~AHPDD-E~l~~GGtiA~~a~~G~~V~vV~~T 37 (283)
T TIGR03446 1 LRLMAVHAHPDD-ESSKGAATMARYAAEGHDVMVVTCT 37 (283)
T ss_pred CeEEEEEeCCCc-HHHhHHHHHHHHHHCCCeEEEEEec
Confidence 378889998852 2345666667788899999988764
No 323
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=27.51 E-value=2.7e+02 Score=25.70 Aligned_cols=35 Identities=17% Similarity=0.098 Sum_probs=22.9
Q ss_pred eEeEEcCCCCCChHH-HHHHHHHHHHhCCCcEEEEE
Q psy14941 28 KILAIFPTPAKSHQI-IFDTILVELYQRGHDLTVIT 62 (513)
Q Consensus 28 kIL~~~p~~~~gH~~-~~~~la~~L~~rGH~Vt~~~ 62 (513)
+|.+++|......+. ....+.+++.++|+++.+..
T Consensus 1 ~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~ 36 (273)
T cd06305 1 RIAVVRYGGSGDFDQAYLAGTKAEAEALGGDLRVYD 36 (273)
T ss_pred CeEEEeecCCCcHHHHHHHHHHHHHHHcCCEEEEEC
Confidence 455566654433333 45678888999999988753
No 324
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=27.44 E-value=80 Score=28.71 Aligned_cols=39 Identities=18% Similarity=0.162 Sum_probs=34.5
Q ss_pred cCceEeEEcCCCCCChHHHHHHHHHHHHhCCCcEEEEEee
Q psy14941 25 QCSKILAIFPTPAKSHQIIFDTILVELYQRGHDLTVITQY 64 (513)
Q Consensus 25 ~~~kIL~~~p~~~~gH~~~~~~la~~L~~rGH~Vt~~~~~ 64 (513)
+..||+ +...++-.|-.-..-++..|..+|++|+++...
T Consensus 87 ~~~~vv-l~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~ 125 (213)
T cd02069 87 SKGKIV-LATVKGDVHDIGKNLVGVILSNNGYEVIDLGVM 125 (213)
T ss_pred CCCeEE-EEeCCCchhHHHHHHHHHHHHhCCCEEEECCCC
Confidence 467888 777788999999999999999999999999864
No 325
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=27.40 E-value=2.2e+02 Score=24.75 Aligned_cols=55 Identities=20% Similarity=0.207 Sum_probs=39.4
Q ss_pred cCceEeEEcCCCCCChHHHHHHHHHHHHhCCCcEE-EEEeecCCccccCCeEEEEec
Q psy14941 25 QCSKILAIFPTPAKSHQIIFDTILVELYQRGHDLT-VITQYPETLVHYERMKVLDIK 80 (513)
Q Consensus 25 ~~~kIL~~~p~~~~gH~~~~~~la~~L~~rGH~Vt-~~~~~~~~~~~~~~~~~i~~~ 80 (513)
.+.||. +...||-|-.-..+.+++.|.++|++|- |+|+.-......-+++.+.+.
T Consensus 4 ~~mki~-ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~gGkR~GF~Ivdl~ 59 (179)
T COG1618 4 MAMKIF-ITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREGGKRIGFKIVDLA 59 (179)
T ss_pred cceEEE-EeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeecCCeEeeeEEEEcc
Confidence 357887 8899999999999999999999999988 444432221113345555553
No 326
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=27.36 E-value=1.2e+02 Score=27.02 Aligned_cols=41 Identities=22% Similarity=0.172 Sum_probs=31.2
Q ss_pred cCceEeEEc-CCCCCChHHHHHHHHHHHHhCCCcEEEEEeec
Q psy14941 25 QCSKILAIF-PTPAKSHQIIFDTILVELYQRGHDLTVITQYP 65 (513)
Q Consensus 25 ~~~kIL~~~-p~~~~gH~~~~~~la~~L~~rGH~Vt~~~~~~ 65 (513)
...|++.+. +-++-|=......||.+|+++|++|.++-.+.
T Consensus 15 ~~~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rVllID~D~ 56 (204)
T TIGR01007 15 AEIKVLLITSVKPGEGKSTTSANIAVAFAQAGYKTLLIDGDM 56 (204)
T ss_pred CCCcEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 335655444 55577888899999999999999988876543
No 327
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=27.24 E-value=51 Score=24.63 Aligned_cols=22 Identities=9% Similarity=0.232 Sum_probs=18.0
Q ss_pred HHHHHHHHHhCCCcEEEEEeec
Q psy14941 44 FDTILVELYQRGHDLTVITQYP 65 (513)
Q Consensus 44 ~~~la~~L~~rGH~Vt~~~~~~ 65 (513)
+..+.++|.++||+|+-+....
T Consensus 10 Ls~v~~~L~~~GyeVv~l~~~~ 31 (80)
T PF03698_consen 10 LSNVKEALREKGYEVVDLENEQ 31 (80)
T ss_pred chHHHHHHHHCCCEEEecCCcc
Confidence 4578999999999998777544
No 328
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=27.19 E-value=90 Score=25.87 Aligned_cols=12 Identities=17% Similarity=0.484 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHH
Q psy14941 478 YYLLDIALVLIV 489 (513)
Q Consensus 478 ~~~lDv~~~~~~ 489 (513)
+++--.+.+++.
T Consensus 26 ffsthm~tILia 37 (189)
T PF05568_consen 26 FFSTHMYTILIA 37 (189)
T ss_pred HHHHHHHHHHHH
Confidence 333334444433
No 329
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=27.08 E-value=2.8e+02 Score=20.91 Aligned_cols=19 Identities=32% Similarity=0.796 Sum_probs=10.7
Q ss_pred CHHHHHHHHHHHHHHHHHH
Q psy14941 474 TWYQYYLLDIALVLIVGLV 492 (513)
Q Consensus 474 ~~~~~~~lDv~~~~~~~~~ 492 (513)
.|++.|-+=++++++++++
T Consensus 61 ~~~~~~k~~~i~~~iv~~~ 79 (89)
T PF00957_consen 61 MWWRNYKLYIIIIIIVIII 79 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHhhhhhh
Confidence 4777776665554444433
No 330
>KOG3488|consensus
Probab=27.02 E-value=94 Score=22.22 Aligned_cols=11 Identities=18% Similarity=0.374 Sum_probs=6.9
Q ss_pred CCCHHHHHHHH
Q psy14941 472 KLTWYQYYLLD 482 (513)
Q Consensus 472 ~~~~~~~~~lD 482 (513)
.+++++-|-||
T Consensus 35 s~hiihKyFLp 45 (81)
T KOG3488|consen 35 SMHIIHKYFLP 45 (81)
T ss_pred hhHHHHHHhcC
Confidence 35567766665
No 331
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a number of antibiotic resistance proteins score above the trusted cutoff of this model.
Probab=26.94 E-value=1.1e+02 Score=29.54 Aligned_cols=38 Identities=16% Similarity=0.239 Sum_probs=29.6
Q ss_pred eEeEEcCCCCCCh---HHHHHHHHHHHHhCCCcEEEEEeec
Q psy14941 28 KILAIFPTPAKSH---QIIFDTILVELYQRGHDLTVITQYP 65 (513)
Q Consensus 28 kIL~~~p~~~~gH---~~~~~~la~~L~~rGH~Vt~~~~~~ 65 (513)
||.+++...+.=| ..-...+.++|.++||+|.++....
T Consensus 1 ~~~~~~gg~s~e~~~s~~s~~~i~~al~~~g~~v~~i~~~~ 41 (315)
T TIGR01205 1 RVAVLFGGKSAEHEISLVSAAAVLKALRDLGYDVYPVDIDK 41 (315)
T ss_pred CEEEEeCCCCCCeeeeHHHHHHHHHHHhhcCCEEEEEeecC
Confidence 5666777776655 4578889999999999999887643
No 332
>PLN00016 RNA-binding protein; Provisional
Probab=26.90 E-value=61 Score=32.39 Aligned_cols=40 Identities=30% Similarity=0.358 Sum_probs=27.8
Q ss_pred cCceEeEEcCCCCCChHHHHHHHHHHHHhCCCcEEEEEeec
Q psy14941 25 QCSKILAIFPTPAKSHQIIFDTILVELYQRGHDLTVITQYP 65 (513)
Q Consensus 25 ~~~kIL~~~p~~~~gH~~~~~~la~~L~~rGH~Vt~~~~~~ 65 (513)
...||| ++..-+.|+=.--..++++|.++||+|+.++-..
T Consensus 51 ~~~~VL-Vt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~~ 90 (378)
T PLN00016 51 EKKKVL-IVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRGK 90 (378)
T ss_pred ccceEE-EEeccCCCceeEhHHHHHHHHHCCCEEEEEecCC
Confidence 446788 5422233555566788999999999999888643
No 333
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=26.88 E-value=1.1e+02 Score=28.73 Aligned_cols=39 Identities=13% Similarity=0.256 Sum_probs=32.3
Q ss_pred eEeEEcCCCCCChHHHHHHHHHHHHhCCCcEEEEEeecC
Q psy14941 28 KILAIFPTPAKSHQIIFDTILVELYQRGHDLTVITQYPE 66 (513)
Q Consensus 28 kIL~~~p~~~~gH~~~~~~la~~L~~rGH~Vt~~~~~~~ 66 (513)
|+++++.-+|-|=..-+..||.+|+++|++|.++-.++.
T Consensus 2 ~~iav~~KGGvGKTT~~~nLA~~La~~G~kVlliD~Dpq 40 (270)
T cd02040 2 RQIAIYGKGGIGKSTTTQNLSAALAEMGKKVMIVGCDPK 40 (270)
T ss_pred cEEEEEeCCcCCHHHHHHHHHHHHHhCCCeEEEEEcCCC
Confidence 444466777889999999999999999999998877654
No 334
>PRK13236 nitrogenase reductase; Reviewed
Probab=26.86 E-value=1.1e+02 Score=29.29 Aligned_cols=40 Identities=10% Similarity=0.218 Sum_probs=34.4
Q ss_pred ceEeEEcCCCCCChHHHHHHHHHHHHhCCCcEEEEEeecC
Q psy14941 27 SKILAIFPTPAKSHQIIFDTILVELYQRGHDLTVITQYPE 66 (513)
Q Consensus 27 ~kIL~~~p~~~~gH~~~~~~la~~L~~rGH~Vt~~~~~~~ 66 (513)
.|++.+..-+|-|=......||-+|+++|++|.++-.++.
T Consensus 6 ~~~~~~~GKGGVGKTt~a~NLA~~La~~G~rVLliD~D~q 45 (296)
T PRK13236 6 IRQIAFYGKGGIGKSTTSQNTLAAMAEMGQRILIVGCDPK 45 (296)
T ss_pred ceEEEEECCCcCCHHHHHHHHHHHHHHCCCcEEEEEccCC
Confidence 4677777778889999999999999999999999877554
No 335
>PF12575 DUF3753: Protein of unknown function (DUF3753); InterPro: IPR009175 This group represents an uncharacterised conserved protein belonging to poxvirus family I2.
Probab=26.59 E-value=2.6e+02 Score=20.40 Aligned_cols=31 Identities=10% Similarity=0.172 Sum_probs=15.6
Q ss_pred hHHHHHHHHHHHHHhCCCCCccccccCCCHH
Q psy14941 446 PLEVAIYWIEYVIKYNGAYHLQSAAVKLTWY 476 (513)
Q Consensus 446 ~~~~a~~~ie~~~~~~~~~~l~~~~~~~~~~ 476 (513)
-.+...+.|..++..+...+-+......+|+
T Consensus 19 Df~~Fi~vVksVltdk~~~~~~~~~~~~~~~ 49 (72)
T PF12575_consen 19 DFNNFINVVKSVLTDKKKLKNNKNNKNFNWI 49 (72)
T ss_pred HHHHHHHHHHHHHcCCccccccCCCCcchHH
Confidence 3456666666666665443333333344443
No 336
>PRK08105 flavodoxin; Provisional
Probab=26.44 E-value=1e+02 Score=26.15 Aligned_cols=38 Identities=16% Similarity=0.173 Sum_probs=28.8
Q ss_pred eEeEEcCCCCCChHHHHHHHHHHHHhCCCcEEEEEeec
Q psy14941 28 KILAIFPTPAKSHQIIFDTILVELYQRGHDLTVITQYP 65 (513)
Q Consensus 28 kIL~~~p~~~~gH~~~~~~la~~L~~rGH~Vt~~~~~~ 65 (513)
||++++.+-+..=-.....|++.|.++|++|.++....
T Consensus 3 ~i~I~YgS~tGnte~~A~~l~~~l~~~g~~~~~~~~~~ 40 (149)
T PRK08105 3 KVGIFVGTVYGNALLVAEEAEAILTAQGHEVTLFEDPE 40 (149)
T ss_pred eEEEEEEcCchHHHHHHHHHHHHHHhCCCceEEechhh
Confidence 67767776665556677888999999999998776543
No 337
>PRK14745 RepA leader peptide Tap; Provisional
Probab=26.33 E-value=43 Score=18.32 Aligned_cols=17 Identities=41% Similarity=0.579 Sum_probs=11.8
Q ss_pred ccchhHHHHHHHHHHHh
Q psy14941 6 GRNQYLISAAILLMCIR 22 (513)
Q Consensus 6 ~~~~~~~~~~~~~~~~~ 22 (513)
|.-||.++..+++.|.+
T Consensus 3 rk~qylfl~hlllpcni 19 (26)
T PRK14745 3 RKFQYLFLWHLLLPCIV 19 (26)
T ss_pred HHHHHHHHHHHHhhccc
Confidence 34688887777766765
No 338
>PF08390 TRAM1: TRAM1-like protein; InterPro: IPR013599 This family comprises sequences that are similar to human TRAM1 (Q15629 from SWISSPROT). This is a transmembrane protein of the endoplasmic reticulum, thought to be involved in the membrane transfer of secretory proteins []. The region featured in this family is found N-terminal to the longevity-assurance protein region (IPR005547 from INTERPRO).
Probab=26.23 E-value=1.2e+02 Score=21.60 Aligned_cols=37 Identities=27% Similarity=0.204 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHhhcccccccc
Q psy14941 475 WYQYYLLDIALVLIVGLVSV-------CFVLKYLCGSLVRRKHK 511 (513)
Q Consensus 475 ~~~~~~lDv~~~~~~~~~~~-------~~~~~~~~~~~~~~~~k 511 (513)
.|..=.-|++++++-+++.. -+++.-+.|.+.-+|.|
T Consensus 21 ~Y~~G~~D~~fV~fy~i~~t~lRa~~m~yvl~Plar~~gi~k~k 64 (65)
T PF08390_consen 21 LYGKGWDDLYFVFFYIIVFTFLRAFLMEYVLDPLARKLGISKKK 64 (65)
T ss_pred ccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 33334456666665443322 24455556666666555
No 339
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=26.17 E-value=1.6e+02 Score=27.18 Aligned_cols=40 Identities=18% Similarity=0.153 Sum_probs=33.8
Q ss_pred EeEEcCCCCCChHHHHHHHHHHHHhCCCcEEEEEeecCCc
Q psy14941 29 ILAIFPTPAKSHQIIFDTILVELYQRGHDLTVITQYPETL 68 (513)
Q Consensus 29 IL~~~p~~~~gH~~~~~~la~~L~~rGH~Vt~~~~~~~~~ 68 (513)
|.+..+-+|.|=.-....||.+|+++|-.|+++-.++.+.
T Consensus 4 Itf~s~KGGaGKTT~~~~LAs~la~~G~~V~lIDaDpn~p 43 (231)
T PF07015_consen 4 ITFASSKGGAGKTTAAMALASELAARGARVALIDADPNQP 43 (231)
T ss_pred EEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCc
Confidence 4455666788999999999999999999999999877643
No 340
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=26.17 E-value=4.7e+02 Score=25.77 Aligned_cols=60 Identities=18% Similarity=0.281 Sum_probs=40.2
Q ss_pred CCceEEeCcccccC-CCCCcHHHHHHhhcC--CCceEEEEeCcccccCCCCHHHHHHHHHHH-hcCCCeEEE
Q psy14941 259 PANVVEIGGIHVKP-AKKLNEEMERFLNES--HNGVIYFSMGSMLKTSSFPPDKFKAFLKAF-SKIPQRVLW 326 (513)
Q Consensus 259 ~p~~~~vG~l~~~~-~~~l~~~l~~~l~~~--~~~~v~vs~Gs~~~~~~~~~~~~~~~~~~~-~~~~~~~i~ 326 (513)
.|+++++|...-.- ...+|..+.+|++.. ....+++-+- .-+..+.+.+++ .++|..-|-
T Consensus 272 vPkf~w~~~~~k~l~r~kl~~kl~~~lekq~~~~~P~liF~p--------~I~~~eq~a~~lk~~~~~~~i~ 335 (441)
T COG4098 272 VPKFVWIGNWNKKLQRNKLPLKLKRWLEKQRKTGRPVLIFFP--------EIETMEQVAAALKKKLPKETIA 335 (441)
T ss_pred CCceEEeccHHHHhhhccCCHHHHHHHHHHHhcCCcEEEEec--------chHHHHHHHHHHHhhCCcccee
Confidence 38889999876443 457899999999876 2234444433 346677788888 567774333
No 341
>KOG1467|consensus
Probab=26.12 E-value=1.1e+02 Score=31.17 Aligned_cols=14 Identities=14% Similarity=0.468 Sum_probs=11.7
Q ss_pred hhhhccCCCEEEEe
Q psy14941 148 VIPYLYKVPYISIA 161 (513)
Q Consensus 148 ~~a~~l~iP~i~~~ 161 (513)
.+|..++||++...
T Consensus 455 lvAna~nVPVlVCC 468 (556)
T KOG1467|consen 455 LVANAFNVPVLVCC 468 (556)
T ss_pred HHhcccCCCEEEEe
Confidence 48999999988765
No 342
>PRK09271 flavodoxin; Provisional
Probab=26.08 E-value=1.2e+02 Score=26.06 Aligned_cols=35 Identities=14% Similarity=0.260 Sum_probs=24.9
Q ss_pred eEeEEcCCCCCChHH-HHHHHHHHHHhCCCcEEEEEe
Q psy14941 28 KILAIFPTPAKSHQI-IFDTILVELYQRGHDLTVITQ 63 (513)
Q Consensus 28 kIL~~~p~~~~gH~~-~~~~la~~L~~rGH~Vt~~~~ 63 (513)
||++++.+. .|+.- ....+++.|.++|++|.+.-.
T Consensus 2 kv~IvY~S~-tGnTe~~A~~ia~~l~~~g~~v~~~~~ 37 (160)
T PRK09271 2 RILLAYASL-SGNTREVAREIEERCEEAGHEVDWVET 37 (160)
T ss_pred eEEEEEEcC-CchHHHHHHHHHHHHHhCCCeeEEEec
Confidence 677677664 46644 566778889899999876543
No 343
>COG4394 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.04 E-value=5.9e+02 Score=24.37 Aligned_cols=89 Identities=13% Similarity=0.128 Sum_probs=53.1
Q ss_pred CcHHHHHHhhcCCCceEEEEeCcccccCCCCHHHHHHHHHHHhcCCCeEEEEEcCCCCCCCCCCCcEEEecCCCcc---c
Q psy14941 276 LNEEMERFLNESHNGVIYFSMGSMLKTSSFPPDKFKAFLKAFSKIPQRVLWKFEDNDTSIFKPYKNIRTSSWMPQR---D 352 (513)
Q Consensus 276 l~~~l~~~l~~~~~~~v~vs~Gs~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~nv~~~~~~pq~---~ 352 (513)
+|.-+++|-+ +++|+++...|... ...+++-+..... .. ++-... . +-.+...+++||+ .
T Consensus 191 ~~s~ieq~r~-a~~p~llL~~e~~~---------~~~~~~~~~~~~~-a~----Gdv~~~-~-~lrvvklPFvpqddyd~ 253 (370)
T COG4394 191 LPSWIEQLRK-ADKPILLLIPEGKT---------QANFAKYFDNNNN-AD----GDVFQT-A-KLRVVKLPFVPQDDYDE 253 (370)
T ss_pred hHHHHHHHHh-cCCCEEEEcccchH---------HHHHHHHcCCCcc-cc----cchhcc-c-ceEEEEecCCcHhHHHH
Confidence 4555555655 46788877654432 3445554432211 11 111111 2 5577888999997 5
Q ss_pred cccCCCceEEeccCCcccHHHHHHcCcceEee
Q psy14941 353 IFAHPNMKLFISHGGLLGITEAVYEGIPVLGI 384 (513)
Q Consensus 353 lL~h~~~~~~IthgG~~s~~Eal~~GvP~i~~ 384 (513)
|| --||+=+-. |--|..-|..+|+|.+=-
T Consensus 254 LL--~lcD~n~VR-GEDSFVRAq~agkPflWH 282 (370)
T COG4394 254 LL--WLCDFNLVR-GEDSFVRAQLAGKPFLWH 282 (370)
T ss_pred HH--Hhcccceee-cchHHHHHHHcCCCcEEE
Confidence 66 456655555 458999999999999753
No 344
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=25.69 E-value=1.5e+02 Score=28.04 Aligned_cols=35 Identities=11% Similarity=0.250 Sum_probs=24.9
Q ss_pred hHHHHhccCCCccEEEEccchhchHHhhhhccCCCEEEEeC
Q psy14941 122 NMKSIWNMENKYDLIITEMFLTDAFLVIPYLYKVPYISIAS 162 (513)
Q Consensus 122 ~l~~~l~~~~~~Dlvi~d~~~~~~~~~~a~~l~iP~i~~~~ 162 (513)
++..+++ +.|++|+-.. +...+|..+|+|++.+..
T Consensus 191 e~~~li~---~~~l~I~~Ds---g~~HlA~a~~~p~i~l~g 225 (279)
T cd03789 191 ELAALLA---RADLVVTNDS---GPMHLAAALGTPTVALFG 225 (279)
T ss_pred HHHHHHH---hCCEEEeeCC---HHHHHHHHcCCCEEEEEC
Confidence 4455554 4899998643 344688899999888765
No 345
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=25.57 E-value=1.3e+02 Score=26.41 Aligned_cols=40 Identities=15% Similarity=0.293 Sum_probs=29.1
Q ss_pred ccCceEeEEcCCCCCChHHHHHHHHHHHHhCCCcEEEEEee
Q psy14941 24 QQCSKILAIFPTPAKSHQIIFDTILVELYQRGHDLTVITQY 64 (513)
Q Consensus 24 ~~~~kIL~~~p~~~~gH~~~~~~la~~L~~rGH~Vt~~~~~ 64 (513)
-++.+++ ++..+|.|=..-..++++++.++|+.|.+++..
T Consensus 45 ~~~~~l~-l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~ 84 (178)
T PF01695_consen 45 ENGENLI-LYGPPGTGKTHLAVAIANEAIRKGYSVLFITAS 84 (178)
T ss_dssp SC--EEE-EEESTTSSHHHHHHHHHHHHHHTT--EEEEEHH
T ss_pred ccCeEEE-EEhhHhHHHHHHHHHHHHHhccCCcceeEeecC
Confidence 3455665 777788888888999999999999999888763
No 346
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=25.52 E-value=2.8e+02 Score=25.62 Aligned_cols=36 Identities=14% Similarity=0.055 Sum_probs=23.0
Q ss_pred eEeEEcCCC-CCChHHHHH-HHHHHHHhCCCcEEEEEe
Q psy14941 28 KILAIFPTP-AKSHQIIFD-TILVELYQRGHDLTVITQ 63 (513)
Q Consensus 28 kIL~~~p~~-~~gH~~~~~-~la~~L~~rGH~Vt~~~~ 63 (513)
||.+++|.. ....+..+. .+-+++.+.|++|.+..+
T Consensus 1 ~i~~i~~~~~~~~~~~~~~~g~~~~~~~~g~~v~~~~~ 38 (271)
T cd06312 1 KIAFVTHGPAGDPFWTVVKNGAEDAAKDLGVDVEYRGP 38 (271)
T ss_pred CEEEecCCCCCCcHHHHHHHHHHHHHHHhCCEEEEECC
Confidence 566566665 455555444 566677778888876654
No 347
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=25.48 E-value=8.5e+02 Score=26.04 Aligned_cols=139 Identities=13% Similarity=0.133 Sum_probs=70.8
Q ss_pred CceEEEEeCcccccCCCCHHHHHHHHHHHhcCCCeEEEEEcCC-CCCCCCCCCcEEEecCCCccccccCCCceEEeccCC
Q psy14941 289 NGVIYFSMGSMLKTSSFPPDKFKAFLKAFSKIPQRVLWKFEDN-DTSIFKPYKNIRTSSWMPQRDIFAHPNMKLFISHGG 367 (513)
Q Consensus 289 ~~~v~vs~Gs~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~nv~~~~~~pq~~lL~h~~~~~~IthgG 367 (513)
.+.|-|-+||.. .....+.....+++++..+-..+.+. ..++ .+ ..++-+. ....+++||.-.|
T Consensus 410 ~~~v~i~~gs~s-----d~~~~~~~~~~l~~~g~~~~~~v~sahr~~~-----~~--~~~~~~~---~~~~~~v~i~~ag 474 (577)
T PLN02948 410 TPLVGIIMGSDS-----DLPTMKDAAEILDSFGVPYEVTIVSAHRTPE-----RM--FSYARSA---HSRGLQVIIAGAG 474 (577)
T ss_pred CCeEEEEECchh-----hHHHHHHHHHHHHHcCCCeEEEEECCccCHH-----HH--HHHHHHH---HHCCCCEEEEEcC
Confidence 455667777765 45667777777777665433332221 1111 00 0111110 1145688998888
Q ss_pred cccHHHH---HHcCcceEeecccc---CcHHHHHHHHHc--CcEEE-ecc-CCCCHHHHHHHHHHhcCHHHHHHHHHHHH
Q psy14941 368 LLGITEA---VYEGIPVLGIPVFG---DQWANIKKLESL--KAGKL-LPY-LEITEETVSDALKIVLSPEYKENAEDLGT 437 (513)
Q Consensus 368 ~~s~~Ea---l~~GvP~i~~P~~~---DQ~~na~~~~~~--G~G~~-l~~-~~~~~~~l~~ai~~ll~~~y~~~a~~~~~ 437 (513)
.-.-+-. -..-+|+|++|.-. +-.+-..-+.+. |+.+. +.. ...+..-+...|-.+-|+..+++.+..++
T Consensus 475 ~~~~l~~~~a~~t~~pvi~vp~~~~~~~g~~~l~s~~~~p~g~pv~~v~i~~~~~aa~~a~~i~~~~~~~~~~~~~~~~~ 554 (577)
T PLN02948 475 GAAHLPGMVASMTPLPVIGVPVKTSHLDGLDSLLSIVQMPRGVPVATVAIGNATNAGLLAVRMLGASDPDLLDKMEAYQE 554 (577)
T ss_pred ccccchHHHhhccCCCEEEcCCCCCCCCcHHHHHHHhcCCCCCeEEEEecCChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 6433332 23468999999843 222222234445 65322 111 22334434433322227888888887777
Q ss_pred HHhcC
Q psy14941 438 RFRDR 442 (513)
Q Consensus 438 ~~~~~ 442 (513)
.+++.
T Consensus 555 ~~~~~ 559 (577)
T PLN02948 555 DMRDM 559 (577)
T ss_pred HHHHH
Confidence 77654
No 348
>PRK06851 hypothetical protein; Provisional
Probab=25.38 E-value=1.9e+02 Score=28.81 Aligned_cols=43 Identities=14% Similarity=0.309 Sum_probs=36.4
Q ss_pred ccCceEeEEcCCCCCChHHHHHHHHHHHHhCCCcEEEEEeecC
Q psy14941 24 QQCSKILAIFPTPAKSHQIIFDTILVELYQRGHDLTVITQYPE 66 (513)
Q Consensus 24 ~~~~kIL~~~p~~~~gH~~~~~~la~~L~~rGH~Vt~~~~~~~ 66 (513)
..+.++.++...||.|....+..+++++.++|.+|.++.....
T Consensus 27 ~~~~~~~il~G~pGtGKStl~~~i~~~~~~~g~~Ve~~~~~~d 69 (367)
T PRK06851 27 DGANRIFILKGGPGTGKSTLMKKIGEEFLEKGYDVEFLHCSSD 69 (367)
T ss_pred cccceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEcCCC
Confidence 3456788788889999999999999999999999998765443
No 349
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=25.29 E-value=48 Score=28.37 Aligned_cols=23 Identities=17% Similarity=0.179 Sum_probs=19.5
Q ss_pred HHHHHHHHHHhCCCcEEEEEeec
Q psy14941 43 IFDTILVELYQRGHDLTVITQYP 65 (513)
Q Consensus 43 ~~~~la~~L~~rGH~Vt~~~~~~ 65 (513)
.-.++|..|+++||+|++++.+.
T Consensus 10 ~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 10 WGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp HHHHHHHHHHHCTEEEEEETSCH
T ss_pred HHHHHHHHHHHcCCEEEEEeccH
Confidence 44589999999999999998753
No 350
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=25.28 E-value=1.4e+02 Score=27.54 Aligned_cols=36 Identities=14% Similarity=0.318 Sum_probs=30.9
Q ss_pred eEeEEcCCCCCChHHHHHHHHHHHHhCCCcEEEEEe
Q psy14941 28 KILAIFPTPAKSHQIIFDTILVELYQRGHDLTVITQ 63 (513)
Q Consensus 28 kIL~~~p~~~~gH~~~~~~la~~L~~rGH~Vt~~~~ 63 (513)
+++.++...+.|=..-+..|+++|.++|++|-++-+
T Consensus 2 ~vi~ivG~~gsGKTtl~~~l~~~L~~~G~~V~viK~ 37 (229)
T PRK14494 2 RAIGVIGFKDSGKTTLIEKILKNLKERGYRVATAKH 37 (229)
T ss_pred eEEEEECCCCChHHHHHHHHHHHHHhCCCeEEEEEe
Confidence 566677767889999999999999999999999864
No 351
>TIGR03010 sulf_tusC_dsrF sulfur relay protein TusC/DsrF. The three proteins TusB, TusC, and TusD form a heterohexamer responsible for a sulfur relay reaction. In large numbers of proteobacterial species, this complex acts on a Cys-derived persulfide moiety, delivered by the cysteine desulfurase IscS to TusA, then to TusBCD. The activated sulfur group is then transferred to TusE (DsrC), then by MnmA (TrmU) for modification of an anticodon nucleotide in tRNAs for Glu, Lys, and Gln. The sulfur relay complex TusBCD is also found, under the designation DsrEFH, in phototrophic and chemotrophic sulfur bacteria, such as Chromatium vinosum. In these organisms, it seems the primary purpose is related to sulfur flux, such as oxidation from sulfide to molecular sulfur to sulfate.
Probab=25.27 E-value=1.2e+02 Score=24.31 Aligned_cols=38 Identities=13% Similarity=0.096 Sum_probs=27.8
Q ss_pred eEeEEcCCCCCChHHHHHHH--HHHHHhCCCcEEEEEeec
Q psy14941 28 KILAIFPTPAKSHQIIFDTI--LVELYQRGHDLTVITQYP 65 (513)
Q Consensus 28 kIL~~~p~~~~gH~~~~~~l--a~~L~~rGH~Vt~~~~~~ 65 (513)
||++++..+-+|+.....++ |-+++.-+++|+++-..+
T Consensus 1 kil~i~~~~Pyg~~~~~e~l~~al~~aa~~~eV~vff~~D 40 (116)
T TIGR03010 1 KLAFVFRQAPHGTASGREGLDALLAASAFDEDIGVFFIDD 40 (116)
T ss_pred CEEEEEcCCCCCcchHHHHHHHHHHHHhccCCeEEEEech
Confidence 57777777777776665555 777788889998877643
No 352
>COG1938 Archaeal enzymes of ATP-grasp superfamily [General function prediction only]
Probab=25.24 E-value=5.6e+02 Score=23.83 Aligned_cols=30 Identities=30% Similarity=0.355 Sum_probs=20.3
Q ss_pred EeccCCcccHHHHHHcCcceEee--ccccCcH
Q psy14941 362 FISHGGLLGITEAVYEGIPVLGI--PVFGDQW 391 (513)
Q Consensus 362 ~IthgG~~s~~Eal~~GvP~i~~--P~~~DQ~ 391 (513)
.|.--+..-+.||...|+|-+++ +.++|-+
T Consensus 153 ~I~G~~g~ll~e~~~r~i~a~~ll~et~~~~P 184 (244)
T COG1938 153 TIVGPSGALLNECLKRGIPALVLLAETFGDRP 184 (244)
T ss_pred eeecccHHHHHHHHHcCCCeEEEeccccCCCC
Confidence 34433456689999999999885 3445544
No 353
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=25.19 E-value=1.3e+02 Score=26.84 Aligned_cols=41 Identities=5% Similarity=0.122 Sum_probs=32.5
Q ss_pred ccCceEeEEcCCCCCChHHHHHHHHHHHHhCCCcEEEEEee
Q psy14941 24 QQCSKILAIFPTPAKSHQIIFDTILVELYQRGHDLTVITQY 64 (513)
Q Consensus 24 ~~~~kIL~~~p~~~~gH~~~~~~la~~L~~rGH~Vt~~~~~ 64 (513)
.+..++.++...+|.|-...+..+++.+.++|.+|.++++.
T Consensus 15 ~~~~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT 55 (196)
T PF13604_consen 15 TSGDRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPT 55 (196)
T ss_dssp HCTCSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESS
T ss_pred hcCCeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCc
Confidence 34557776778889999999999999999999999888763
No 354
>PRK06756 flavodoxin; Provisional
Probab=25.17 E-value=1.2e+02 Score=25.41 Aligned_cols=36 Identities=22% Similarity=0.290 Sum_probs=25.9
Q ss_pred ceEeEEcCCCCCChHHH-HHHHHHHHHhCCCcEEEEEe
Q psy14941 27 SKILAIFPTPAKSHQII-FDTILVELYQRGHDLTVITQ 63 (513)
Q Consensus 27 ~kIL~~~p~~~~gH~~~-~~~la~~L~~rGH~Vt~~~~ 63 (513)
.||++++.+ ..||.-- ...+++.|.++|++|.+...
T Consensus 2 mkv~IiY~S-~tGnTe~vA~~ia~~l~~~g~~v~~~~~ 38 (148)
T PRK06756 2 SKLVMIFAS-MSGNTEEMADHIAGVIRETENEIEVIDI 38 (148)
T ss_pred ceEEEEEEC-CCchHHHHHHHHHHHHhhcCCeEEEeeh
Confidence 377766665 4577664 56778889899999877654
No 355
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=25.13 E-value=1.4e+02 Score=30.40 Aligned_cols=34 Identities=12% Similarity=0.026 Sum_probs=24.0
Q ss_pred CceEeEEcCCCCCChHHHHHHHHHHHHhCCCcEEEEEeec
Q psy14941 26 CSKILAIFPTPAKSHQIIFDTILVELYQRGHDLTVITQYP 65 (513)
Q Consensus 26 ~~kIL~~~p~~~~gH~~~~~~la~~L~~rGH~Vt~~~~~~ 65 (513)
..||| ++..++.-| +|+..|++.|+-+.+++.+.
T Consensus 4 ~~kvL-viG~g~reh-----al~~~~~~~~~~~~~~~~pg 37 (426)
T PRK13789 4 KLKVL-LIGSGGRES-----AIAFALRKSNLLSELKVFPG 37 (426)
T ss_pred CcEEE-EECCCHHHH-----HHHHHHHhCCCCCEEEEECC
Confidence 46999 666666555 68999999886656666544
No 356
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=25.02 E-value=75 Score=29.36 Aligned_cols=31 Identities=10% Similarity=0.098 Sum_probs=25.5
Q ss_pred CCCChH-HHHHHHHHHHHhC--CCcEEEEEeecC
Q psy14941 36 PAKSHQ-IIFDTILVELYQR--GHDLTVITQYPE 66 (513)
Q Consensus 36 ~~~gH~-~~~~~la~~L~~r--GH~Vt~~~~~~~ 66 (513)
.|.|+. .-...+++.|.++ ||+|.++.+...
T Consensus 7 tGs~~~~~~~~~l~~~L~~~~~g~~V~vv~T~~a 40 (234)
T TIGR02700 7 TGAGHLLVESFQVMKELKREIEELRVSTFVSRAG 40 (234)
T ss_pred eCccHhHHHHHHHHHHHHhhcCCCeEEEEEChhH
Confidence 344666 6899999999999 999999988654
No 357
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=24.92 E-value=1.3e+02 Score=25.65 Aligned_cols=35 Identities=17% Similarity=0.293 Sum_probs=29.2
Q ss_pred eEEcCCCCCChHHHHHHHHHHHHhCCCcEEEEEee
Q psy14941 30 LAIFPTPAKSHQIIFDTILVELYQRGHDLTVITQY 64 (513)
Q Consensus 30 L~~~p~~~~gH~~~~~~la~~L~~rGH~Vt~~~~~ 64 (513)
+.++...+.|=...+..++++|.++|++|.++-..
T Consensus 2 i~i~G~~gsGKTtl~~~l~~~l~~~G~~V~viK~~ 36 (155)
T TIGR00176 2 LQIVGPKNSGKTTLIERLVKALKARGYRVATIKHD 36 (155)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecc
Confidence 44666677888889999999999999999988753
No 358
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=24.91 E-value=67 Score=29.56 Aligned_cols=22 Identities=23% Similarity=0.374 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHhCCCcEEEEEe
Q psy14941 42 IIFDTILVELYQRGHDLTVITQ 63 (513)
Q Consensus 42 ~~~~~la~~L~~rGH~Vt~~~~ 63 (513)
.--..+|++|.++||+|+++..
T Consensus 27 ~iG~aLA~~L~~~G~~V~li~r 48 (229)
T PRK06732 27 QLGKIIAETFLAAGHEVTLVTT 48 (229)
T ss_pred HHHHHHHHHHHhCCCEEEEEEC
Confidence 3457889999999999999874
No 359
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=24.80 E-value=4.8e+02 Score=28.62 Aligned_cols=36 Identities=8% Similarity=0.039 Sum_probs=28.6
Q ss_pred eEeEEcCCCCCChHHHHHHHHHHHHhCCCcEEEEEe
Q psy14941 28 KILAIFPTPAKSHQIIFDTILVELYQRGHDLTVITQ 63 (513)
Q Consensus 28 kIL~~~p~~~~gH~~~~~~la~~L~~rGH~Vt~~~~ 63 (513)
.|++.-+.++.|=....+.|++.|.++|.+|-++-|
T Consensus 4 ~l~I~~T~t~~GKT~vslgL~~~L~~~G~~Vg~fKP 39 (684)
T PRK05632 4 SIYLAPTGTGVGLTSVSLGLMRALERKGVKVGFFKP 39 (684)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEeCC
Confidence 455333444578889999999999999999998875
No 360
>PF05225 HTH_psq: helix-turn-helix, Psq domain; InterPro: IPR007889 This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster []. In pipsqueak this domain binds to GAGA sequence []. The pipsqueak family, which includes proteins from fungi, sea urchins, nematodes, insects, and vertebrates appear to be proteins essential for sequence-specific targeting of a polycomb group protein complex [].; GO: 0003677 DNA binding; PDB: 2COB_A.
Probab=24.65 E-value=83 Score=20.42 Aligned_cols=24 Identities=25% Similarity=0.339 Sum_probs=17.1
Q ss_pred CHHHHHHHHHHhc-C-HHHHHHHHHH
Q psy14941 412 TEETVSDALKIVL-S-PEYKENAEDL 435 (513)
Q Consensus 412 ~~~~l~~ai~~ll-~-~~y~~~a~~~ 435 (513)
|+++|.+||..+. + -++++.|+..
T Consensus 1 tee~l~~Ai~~v~~g~~S~r~AA~~y 26 (45)
T PF05225_consen 1 TEEDLQKAIEAVKNGKMSIRKAAKKY 26 (45)
T ss_dssp -HHHHHHHHHHHHTTSS-HHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 5788999999998 5 5677766654
No 361
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=24.52 E-value=1.5e+02 Score=21.87 Aligned_cols=31 Identities=13% Similarity=0.223 Sum_probs=26.1
Q ss_pred EcCCCCCChHHHHHHHHHHHHhCCCcEEEEE
Q psy14941 32 IFPTPAKSHQIIFDTILVELYQRGHDLTVIT 62 (513)
Q Consensus 32 ~~p~~~~gH~~~~~~la~~L~~rGH~Vt~~~ 62 (513)
+....+.|=......++..|+++|++|.++.
T Consensus 4 ~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 4 VTGKGGVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred EECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 5555577888899999999999999998766
No 362
>COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism]
Probab=24.43 E-value=8.2e+02 Score=25.50 Aligned_cols=128 Identities=10% Similarity=0.046 Sum_probs=77.0
Q ss_pred CceEEEEeCcccccCCCCHHHHHHHHHHHhcCCCeEEEEEcCCC-CC-------CCCCCCcEEEecCCCcc-ccccCCCc
Q psy14941 289 NGVIYFSMGSMLKTSSFPPDKFKAFLKAFSKIPQRVLWKFEDND-TS-------IFKPYKNIRTSSWMPQR-DIFAHPNM 359 (513)
Q Consensus 289 ~~~v~vs~Gs~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~-------~~~~~~nv~~~~~~pq~-~lL~h~~~ 359 (513)
++.++..-|.... +-..+.+...+..+-+...+++..-.++. ++ +.. +.++.+.-|.+.. ..+-+..+
T Consensus 293 ~~pl~~~vsRl~~--QKG~dl~~~~i~~~l~~~~~~vilG~gd~~le~~~~~la~~~-~~~~~~~i~~~~~la~~i~aga 369 (487)
T COG0297 293 PGPLFGFVSRLTA--QKGLDLLLEAIDELLEQGWQLVLLGTGDPELEEALRALASRH-PGRVLVVIGYDEPLAHLIYAGA 369 (487)
T ss_pred CCcEEEEeecccc--ccchhHHHHHHHHHHHhCceEEEEecCcHHHHHHHHHHHHhc-CceEEEEeeecHHHHHHHHhcC
Confidence 3444444444442 33444555555544444555555433321 11 113 5567777777654 33335778
Q ss_pred eEEecc-----CCcccHHHHHHcCcceEeecccc------CcHHHHHHHHHcCcEEEeccCCCCHHHHHHHHHHhc
Q psy14941 360 KLFISH-----GGLLGITEAVYEGIPVLGIPVFG------DQWANIKKLESLKAGKLLPYLEITEETVSDALKIVL 424 (513)
Q Consensus 360 ~~~Ith-----gG~~s~~Eal~~GvP~i~~P~~~------DQ~~na~~~~~~G~G~~l~~~~~~~~~l~~ai~~ll 424 (513)
|+++-- || .|-++|+.+|.+-|+.|..| |-..++ ....|.|.... +.+++.+..++++.+
T Consensus 370 D~~lmPSrfEPcG-L~ql~amryGtvpIv~~tGGLadTV~~~~~~~--~~~~gtGf~f~--~~~~~~l~~al~rA~ 440 (487)
T COG0297 370 DVILMPSRFEPCG-LTQLYAMRYGTLPIVRETGGLADTVVDRNEWL--IQGVGTGFLFL--QTNPDHLANALRRAL 440 (487)
T ss_pred CEEEeCCcCcCCc-HHHHHHHHcCCcceEcccCCccceecCccchh--ccCceeEEEEe--cCCHHHHHHHHHHHH
Confidence 887753 55 46789999999888888754 222222 46678888887 349999999998776
No 363
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=24.31 E-value=76 Score=25.90 Aligned_cols=6 Identities=0% Similarity=0.340 Sum_probs=2.2
Q ss_pred HHHHHH
Q psy14941 480 LLDIAL 485 (513)
Q Consensus 480 ~lDv~~ 485 (513)
.+=|.+
T Consensus 70 i~gv~a 75 (122)
T PF01102_consen 70 IFGVMA 75 (122)
T ss_dssp HHHHHH
T ss_pred hHHHHH
Confidence 333333
No 364
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=24.22 E-value=4.5e+02 Score=22.44 Aligned_cols=137 Identities=15% Similarity=0.149 Sum_probs=77.1
Q ss_pred eEEEEeCcccccCCCCHHHHHHHHHHHhcCCCeE-EEEEcCCCCCCCCCCCcEEEecCCCccccccCCCceEEeccCCcc
Q psy14941 291 VIYFSMGSMLKTSSFPPDKFKAFLKAFSKIPQRV-LWKFEDNDTSIFKPYKNIRTSSWMPQRDIFAHPNMKLFISHGGLL 369 (513)
Q Consensus 291 ~v~vs~Gs~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~~nv~~~~~~pq~~lL~h~~~~~~IthgG~~ 369 (513)
.|-+-+||.. .-+..+...+.|.+++..+ .++.+....|+.. ..|.- -......+++|.-.|.-
T Consensus 4 ~V~IIMGS~S-----D~~~mk~Aa~~L~~fgi~ye~~VvSAHRTPe~m-------~~ya~---~a~~~g~~viIAgAGgA 68 (162)
T COG0041 4 KVGIIMGSKS-----DWDTMKKAAEILEEFGVPYEVRVVSAHRTPEKM-------FEYAE---EAEERGVKVIIAGAGGA 68 (162)
T ss_pred eEEEEecCcc-----hHHHHHHHHHHHHHcCCCeEEEEEeccCCHHHH-------HHHHH---HHHHCCCeEEEecCcch
Confidence 5677789876 4577788888888887643 3333332222200 11110 11235678888877641
Q ss_pred ---cHHHHHHcCcceEeecccc---CcHHHHHHHHHcCcEEEec---c-CCCCHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q psy14941 370 ---GITEAVYEGIPVLGIPVFG---DQWANIKKLESLKAGKLLP---Y-LEITEETVSDALKIVLSPEYKENAEDLGTRF 439 (513)
Q Consensus 370 ---s~~Eal~~GvP~i~~P~~~---DQ~~na~~~~~~G~G~~l~---~-~~~~~~~l~~ai~~ll~~~y~~~a~~~~~~~ 439 (513)
.=+-|...-+|+|++|.-. +--+--.-+.+.--|+-+- . +..+..-+...|-.+-|+.++++.+++.+..
T Consensus 69 AHLPGmvAa~T~lPViGVPv~s~~L~GlDSL~SiVQMP~GvPVaTvaIg~a~NAallAa~ILa~~d~~l~~kl~~~r~~~ 148 (162)
T COG0041 69 AHLPGMVAAKTPLPVIGVPVQSKALSGLDSLLSIVQMPAGVPVATVAIGNAANAALLAAQILAIKDPELAEKLAEFREAQ 148 (162)
T ss_pred hhcchhhhhcCCCCeEeccCccccccchHHHHHHhcCCCCCeeEEEeecchhhHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 1122344579999999863 3334445566654444221 1 2234444444443333899999999888876
Q ss_pred hcC
Q psy14941 440 RDR 442 (513)
Q Consensus 440 ~~~ 442 (513)
++.
T Consensus 149 ~~~ 151 (162)
T COG0041 149 TEE 151 (162)
T ss_pred HHH
Confidence 543
No 365
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=24.11 E-value=3.7e+02 Score=25.08 Aligned_cols=40 Identities=18% Similarity=0.247 Sum_probs=25.6
Q ss_pred HhHHHHhccCCCccEEEEccchhc------hHHhhhhccCCCEEEEeC
Q psy14941 121 ENMKSIWNMENKYDLIITEMFLTD------AFLVIPYLYKVPYISIAS 162 (513)
Q Consensus 121 ~~l~~~l~~~~~~Dlvi~d~~~~~------~~~~~a~~l~iP~i~~~~ 162 (513)
+.+.++++ +.++|+||= ..-+. .+..+|+.+|||++-+..
T Consensus 55 ~~l~~~l~-~~~i~~VID-ATHPfA~~is~~a~~ac~~~~ipyiR~eR 100 (248)
T PRK08057 55 EGLAAYLR-EEGIDLVID-ATHPYAAQISANAAAACRALGIPYLRLER 100 (248)
T ss_pred HHHHHHHH-HCCCCEEEE-CCCccHHHHHHHHHHHHHHhCCcEEEEeC
Confidence 34556666 677887663 32222 233578899999998864
No 366
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=24.06 E-value=2.9e+02 Score=27.97 Aligned_cols=66 Identities=20% Similarity=0.152 Sum_probs=0.0
Q ss_pred HHHHHHHHHHh-hccCceEeEEcCCCCC------------ChHHHHHHHHHHHHhCCCcEEEEEeecCCccccCCeEEEE
Q psy14941 12 ISAAILLMCIR-IQQCSKILAIFPTPAK------------SHQIIFDTILVELYQRGHDLTVITQYPETLVHYERMKVLD 78 (513)
Q Consensus 12 ~~~~~~~~~~~-~~~~~kIL~~~p~~~~------------gH~~~~~~la~~L~~rGH~Vt~~~~~~~~~~~~~~~~~i~ 78 (513)
|...+.-.+.- ...+.+|| +...+.. |-=.--..+|++|+++|++|+++........ ..++..+.
T Consensus 173 I~~~~~~~~~~~~l~gk~vl-ITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~~~Ga~V~~v~~~~~~~~-~~~~~~~d 250 (399)
T PRK05579 173 IVAAAERALSPKDLAGKRVL-ITAGPTREPIDPVRYITNRSSGKMGYALARAAARRGADVTLVSGPVNLPT-PAGVKRID 250 (399)
T ss_pred HHHHHHHHhhhcccCCCEEE-EeCCCccccccceeeeccCCcchHHHHHHHHHHHCCCEEEEeCCCccccC-CCCcEEEc
Q ss_pred e
Q psy14941 79 I 79 (513)
Q Consensus 79 ~ 79 (513)
+
T Consensus 251 v 251 (399)
T PRK05579 251 V 251 (399)
T ss_pred c
No 367
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=23.91 E-value=86 Score=22.97 Aligned_cols=24 Identities=21% Similarity=0.220 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHhCCCcEEEEEeec
Q psy14941 42 IIFDTILVELYQRGHDLTVITQYP 65 (513)
Q Consensus 42 ~~~~~la~~L~~rGH~Vt~~~~~~ 65 (513)
.....+|..|+++|.+||++...+
T Consensus 9 ~ig~E~A~~l~~~g~~vtli~~~~ 32 (80)
T PF00070_consen 9 FIGIELAEALAELGKEVTLIERSD 32 (80)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSS
T ss_pred HHHHHHHHHHHHhCcEEEEEeccc
Confidence 456789999999999999988744
No 368
>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.
Probab=23.89 E-value=2.4e+02 Score=25.82 Aligned_cols=35 Identities=23% Similarity=0.182 Sum_probs=21.8
Q ss_pred EeEEcCCCCCChHHHH-HHHHHHHHhCCCcEEEEEe
Q psy14941 29 ILAIFPTPAKSHQIIF-DTILVELYQRGHDLTVITQ 63 (513)
Q Consensus 29 IL~~~p~~~~gH~~~~-~~la~~L~~rGH~Vt~~~~ 63 (513)
|.+++|......+..+ ..+.+++.++|.+|++..+
T Consensus 2 I~vv~~~~~~~~~~~~~~~i~~~~~~~g~~v~~~~~ 37 (268)
T cd06323 2 IGLSVSTLNNPFFVTLKDGAQKEAKELGYELTVLDA 37 (268)
T ss_pred eeEecccccCHHHHHHHHHHHHHHHHcCceEEecCC
Confidence 4446665544444444 4777788888888876443
No 369
>COG0118 HisH Glutamine amidotransferase [Amino acid transport and metabolism]
Probab=23.88 E-value=99 Score=27.66 Aligned_cols=97 Identities=22% Similarity=0.244 Sum_probs=52.8
Q ss_pred eEEEEeCcccccCCCCHHHHHHHHHHHhcCCCeEEEEEcCCCCCCCCCCCcEEEecCCCccccccCCCceEEeccCCccc
Q psy14941 291 VIYFSMGSMLKTSSFPPDKFKAFLKAFSKIPQRVLWKFEDNDTSIFKPYKNIRTSSWMPQRDIFAHPNMKLFISHGGLLG 370 (513)
Q Consensus 291 ~v~vs~Gs~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~nv~~~~~~pq~~lL~h~~~~~~IthgG~~s 370 (513)
++.+--|+. -+..+..|+++.+..+.++-+.++... .+.+.+-+-=--.+-+ .+.+ --|....
T Consensus 4 i~IIDyg~G---------NL~Sv~~Aler~G~~~~vs~d~~~i~~---AD~liLPGVGaf~~am--~~L~---~~gl~~~ 66 (204)
T COG0118 4 VAIIDYGSG---------NLRSVKKALERLGAEVVVSRDPEEILK---ADKLILPGVGAFGAAM--ANLR---ERGLIEA 66 (204)
T ss_pred EEEEEcCcc---------hHHHHHHHHHHcCCeeEEecCHHHHhh---CCEEEecCCCCHHHHH--HHHH---hcchHHH
Confidence 455555554 367888999999998888765544332 3333322111111111 1111 1144567
Q ss_pred HHHHHHcCcceEeeccccCcHHHHHHHHH---cCcEEE
Q psy14941 371 ITEAVYEGIPVLGIPVFGDQWANIKKLES---LKAGKL 405 (513)
Q Consensus 371 ~~Eal~~GvP~i~~P~~~DQ~~na~~~~~---~G~G~~ 405 (513)
+.|++..|+|++++-+ +=|-.-..-.|. .|+|+.
T Consensus 67 i~~~~~~~kP~LGICl-GMQlLfe~SeE~~~~~GLg~i 103 (204)
T COG0118 67 IKEAVESGKPFLGICL-GMQLLFERSEEGGGVKGLGLI 103 (204)
T ss_pred HHHHHhcCCCEEEEeH-hHHhhhhcccccCCCCCccee
Confidence 8888889999999854 234333333333 455544
No 370
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=23.84 E-value=1.5e+02 Score=25.40 Aligned_cols=37 Identities=14% Similarity=0.038 Sum_probs=30.8
Q ss_pred EeEEcCCCCCChHHHHHHHHHHHHhCCCcEEEEEeec
Q psy14941 29 ILAIFPTPAKSHQIIFDTILVELYQRGHDLTVITQYP 65 (513)
Q Consensus 29 IL~~~p~~~~gH~~~~~~la~~L~~rGH~Vt~~~~~~ 65 (513)
|.+...-+|-|=..-...||..|+++|++|.++-.++
T Consensus 2 i~v~~~kgG~GKtt~a~~la~~l~~~g~~vllvD~D~ 38 (179)
T cd02036 2 IVVTSGKGGVGKTTTTANLGTALAQLGYKVVLIDADL 38 (179)
T ss_pred EEEeeCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 4556677788999999999999999999999886544
No 371
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=23.76 E-value=3.9e+02 Score=24.39 Aligned_cols=33 Identities=9% Similarity=0.008 Sum_probs=21.2
Q ss_pred CCCccEEEEccchhc-hHHhhhhccCCCEEEEeC
Q psy14941 130 ENKYDLIITEMFLTD-AFLVIPYLYKVPYISIAS 162 (513)
Q Consensus 130 ~~~~Dlvi~d~~~~~-~~~~~a~~l~iP~i~~~~ 162 (513)
..++|.+|....... .....+...|+|+|.+..
T Consensus 53 ~~~vdgiii~~~~~~~~~~~~~~~~~ipvv~~~~ 86 (268)
T cd01575 53 SRRPAGLILTGLEHTERTRQLLRAAGIPVVEIMD 86 (268)
T ss_pred HcCCCEEEEeCCCCCHHHHHHHHhcCCCEEEEec
Confidence 367998887654322 233455677999998754
No 372
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=23.76 E-value=95 Score=26.89 Aligned_cols=41 Identities=17% Similarity=0.304 Sum_probs=27.0
Q ss_pred CCChHHHHHHHHHHHHhCCCcEEEEEeecCCccccCCeEEEEe
Q psy14941 37 AKSHQIIFDTILVELYQRGHDLTVITQYPETLVHYERMKVLDI 79 (513)
Q Consensus 37 ~~gH~~~~~~la~~L~~rGH~Vt~~~~~~~~~~~~~~~~~i~~ 79 (513)
+.|++ -..++++|.++||+|+.++-.+.+.....+++.+..
T Consensus 6 atG~v--G~~l~~~L~~~~~~V~~~~R~~~~~~~~~~~~~~~~ 46 (183)
T PF13460_consen 6 ATGFV--GRALAKQLLRRGHEVTALVRSPSKAEDSPGVEIIQG 46 (183)
T ss_dssp TTSHH--HHHHHHHHHHTTSEEEEEESSGGGHHHCTTEEEEES
T ss_pred CCChH--HHHHHHHHHHCCCEEEEEecCchhccccccccccee
Confidence 34544 456999999999999999875443221345555543
No 373
>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional
Probab=23.76 E-value=4.2e+02 Score=27.12 Aligned_cols=35 Identities=6% Similarity=-0.041 Sum_probs=27.4
Q ss_pred EeEEcCCCCCChHHHHHHHHHHHHhCCCcEEEEEe
Q psy14941 29 ILAIFPTPAKSHQIIFDTILVELYQRGHDLTVITQ 63 (513)
Q Consensus 29 IL~~~p~~~~gH~~~~~~la~~L~~rGH~Vt~~~~ 63 (513)
|++--+..+.|=...+..|++.|.++|.+|..+-+
T Consensus 4 ~~i~~~~s~~GKT~vt~gl~~~l~~~g~~v~~~K~ 38 (433)
T PRK13896 4 FVLGGTSSGVGKTVATLATIRALEDAGYAVQPAKA 38 (433)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHHCCCeeEEEee
Confidence 44344455678999999999999999999966654
No 374
>cd06290 PBP1_LacI_like_9 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=23.68 E-value=3.9e+02 Score=24.49 Aligned_cols=35 Identities=17% Similarity=0.025 Sum_probs=22.3
Q ss_pred EeEEcCCCCCChHH-HHHHHHHHHHhCCCcEEEEEe
Q psy14941 29 ILAIFPTPAKSHQI-IFDTILVELYQRGHDLTVITQ 63 (513)
Q Consensus 29 IL~~~p~~~~gH~~-~~~~la~~L~~rGH~Vt~~~~ 63 (513)
|.+++|......+. ....+.+++.++|+++.+..+
T Consensus 2 i~vi~~~~~~~~~~~~~~gi~~~~~~~gy~~~~~~~ 37 (265)
T cd06290 2 IGVLTQDFASPFYGRILKGMERGLNGSGYSPIIATG 37 (265)
T ss_pred EEEEECCCCCchHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 44456654433333 344677888899999887654
No 375
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=23.68 E-value=1.4e+02 Score=28.07 Aligned_cols=37 Identities=16% Similarity=0.259 Sum_probs=31.4
Q ss_pred EeEEcCCCCCChHHHHHHHHHHHHhCCCcEEEEEeecC
Q psy14941 29 ILAIFPTPAKSHQIIFDTILVELYQRGHDLTVITQYPE 66 (513)
Q Consensus 29 IL~~~p~~~~gH~~~~~~la~~L~~rGH~Vt~~~~~~~ 66 (513)
|. ++.-+|-|-..-...||.+|+++|++|.++-.++.
T Consensus 3 i~-v~gKGGvGKTT~a~nLA~~la~~G~rvlliD~Dpq 39 (267)
T cd02032 3 LA-VYGKGGIGKSTTSSNLSVALAKRGKKVLQIGCDPK 39 (267)
T ss_pred EE-EecCCCCCHHHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 44 55778889999999999999999999998877653
No 376
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=23.67 E-value=67 Score=29.30 Aligned_cols=31 Identities=23% Similarity=0.461 Sum_probs=23.2
Q ss_pred hccCceEeEEcCCCCCChHHHHHHHHHHHHhCCCcEEEE
Q psy14941 23 IQQCSKILAIFPTPAKSHQIIFDTILVELYQRGHDLTVI 61 (513)
Q Consensus 23 ~~~~~kIL~~~p~~~~gH~~~~~~la~~L~~rGH~Vt~~ 61 (513)
...+.+|| +|.-|.||- +..|+++||+|+=+
T Consensus 35 ~~~~~rvL--vPgCG~g~D------~~~La~~G~~VvGv 65 (218)
T PF05724_consen 35 LKPGGRVL--VPGCGKGYD------MLWLAEQGHDVVGV 65 (218)
T ss_dssp TSTSEEEE--ETTTTTSCH------HHHHHHTTEEEEEE
T ss_pred CCCCCeEE--EeCCCChHH------HHHHHHCCCeEEEE
Confidence 34456776 688899987 56788999997644
No 377
>PRK13181 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=23.60 E-value=2.9e+02 Score=24.55 Aligned_cols=28 Identities=7% Similarity=0.196 Sum_probs=18.3
Q ss_pred eEEEEeCcccccCCCCHHHHHHHHHHHhcCCCeEEEE
Q psy14941 291 VIYFSMGSMLKTSSFPPDKFKAFLKAFSKIPQRVLWK 327 (513)
Q Consensus 291 ~v~vs~Gs~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 327 (513)
++++-+|+.. ...+..+++..+..+.+.
T Consensus 2 i~vid~g~gn---------~~~~~~~l~~~g~~v~~~ 29 (199)
T PRK13181 2 IAIIDYGAGN---------LRSVANALKRLGVEAVVS 29 (199)
T ss_pred EEEEeCCCCh---------HHHHHHHHHHCCCcEEEE
Confidence 4567777764 356666777777765554
No 378
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=23.44 E-value=1.7e+02 Score=28.12 Aligned_cols=41 Identities=12% Similarity=0.213 Sum_probs=33.9
Q ss_pred CceEeEEcCCCCCChHHHHHHHHHHHHhCCCcEEEEEeecC
Q psy14941 26 CSKILAIFPTPAKSHQIIFDTILVELYQRGHDLTVITQYPE 66 (513)
Q Consensus 26 ~~kIL~~~p~~~~gH~~~~~~la~~L~~rGH~Vt~~~~~~~ 66 (513)
.+|++.++.-+|-|=..-...||.+|+++|++|.++-.++.
T Consensus 3 ~~~~iai~~KGGvGKTt~~~nLa~~la~~g~kVLliD~D~q 43 (295)
T PRK13234 3 KLRQIAFYGKGGIGKSTTSQNTLAALVEMGQKILIVGCDPK 43 (295)
T ss_pred cceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEecccc
Confidence 34666666777889999999999999999999999876554
No 379
>PRK06988 putative formyltransferase; Provisional
Probab=23.44 E-value=3e+02 Score=26.68 Aligned_cols=33 Identities=18% Similarity=0.307 Sum_probs=22.6
Q ss_pred ceEeEEcCCCCCChHHHHHHHHHHHHhCCCcEEEEEeec
Q psy14941 27 SKILAIFPTPAKSHQIIFDTILVELYQRGHDLTVITQYP 65 (513)
Q Consensus 27 ~kIL~~~p~~~~gH~~~~~~la~~L~~rGH~Vt~~~~~~ 65 (513)
.||+ ++.. ++ ......++|.++||+|..+.+.+
T Consensus 3 mkIv-f~Gs---~~--~a~~~L~~L~~~~~~i~~Vvt~~ 35 (312)
T PRK06988 3 PRAV-VFAY---HN--VGVRCLQVLLARGVDVALVVTHE 35 (312)
T ss_pred cEEE-EEeC---cH--HHHHHHHHHHhCCCCEEEEEcCC
Confidence 4776 4433 33 55677788888999988776644
No 380
>cd01540 PBP1_arabinose_binding Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. ABP is only involved in transport contrary to other related sugar-binding proteins such as the glucose/galactose-binding protein (GGBP) and the ribose-binding protein (RBP), both of which are involved in chemotaxis as well as transport. The periplasmic ABP consists of two alpha/beta globular domains connected by a three-stranded hinge, a Venus flytrap-like domain, which undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, ABP is homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR) and DNA-binding transcriptional repressors such a
Probab=23.37 E-value=2.8e+02 Score=25.91 Aligned_cols=35 Identities=14% Similarity=0.041 Sum_probs=21.9
Q ss_pred EeEEcCCCCCChHHHH-HHHHHHHHhCCCcEEEEEe
Q psy14941 29 ILAIFPTPAKSHQIIF-DTILVELYQRGHDLTVITQ 63 (513)
Q Consensus 29 IL~~~p~~~~gH~~~~-~~la~~L~~rGH~Vt~~~~ 63 (513)
|-+++|.....++..+ ..+-+++.+.|+++.++.+
T Consensus 2 Ig~v~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~ 37 (289)
T cd01540 2 IGFIVKQPEEPWFQTEWKFAKKAAKEKGFTVVKIDV 37 (289)
T ss_pred eeeecCCCCCcHHHHHHHHHHHHHHHcCCEEEEccC
Confidence 4445665444444444 4567888889999876544
No 381
>KOG1986|consensus
Probab=23.37 E-value=1.9e+02 Score=31.00 Aligned_cols=54 Identities=20% Similarity=0.265 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHh-hccCceEeEEcCCC----------------CCChH--------------HHHHHHHHHHHhCCCcEE
Q psy14941 11 LISAAILLMCIR-IQQCSKILAIFPTP----------------AKSHQ--------------IIFDTILVELYQRGHDLT 59 (513)
Q Consensus 11 ~~~~~~~~~~~~-~~~~~kIL~~~p~~----------------~~gH~--------------~~~~~la~~L~~rGH~Vt 59 (513)
++++.+.|+-.| +..++||+.+...| ..+|. ..+..||+++++.||-|.
T Consensus 254 Al~iA~~Ll~~c~p~~g~rIv~f~gGPcT~GpG~vv~~el~~piRshhdi~~d~a~y~kKa~KfY~~La~r~~~~ghvlD 333 (745)
T KOG1986|consen 254 ALSIASGLLEGCFPNTGARIVLFAGGPCTRGPGTVVSRELKEPIRSHHDIEKDNAPYYKKAIKFYEKLAERLANQGHVLD 333 (745)
T ss_pred HHHHHHHHhcccCCCCcceEEEeccCCCCcCCceecchhhcCCCcCcccccCcchHHHHHHHHHHHHHHHHHHhCCceEe
Confidence 455555656555 77889999776653 23444 478899999999999999
Q ss_pred EEEee
Q psy14941 60 VITQY 64 (513)
Q Consensus 60 ~~~~~ 64 (513)
++...
T Consensus 334 ifa~~ 338 (745)
T KOG1986|consen 334 IFAAA 338 (745)
T ss_pred eeeee
Confidence 88763
No 382
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=22.85 E-value=3.2e+02 Score=25.26 Aligned_cols=85 Identities=18% Similarity=0.219 Sum_probs=52.9
Q ss_pred HHHHHHhhcCCCceEEEEeCcccccCCCCHHHHHHHHHHHhcCCCeEEEEEcCCCCCCCCCCCcEEEecCCCccccccCC
Q psy14941 278 EEMERFLNESHNGVIYFSMGSMLKTSSFPPDKFKAFLKAFSKIPQRVLWKFEDNDTSIFKPYKNIRTSSWMPQRDIFAHP 357 (513)
Q Consensus 278 ~~l~~~l~~~~~~~v~vs~Gs~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~nv~~~~~~pq~~lL~h~ 357 (513)
+.+.+|+.+ .+.++|+-.-|.. ....+..+.+.+++++++..+..... .++ + .+.+ .
T Consensus 22 ~~~~~~~~~-~~~v~fIPtAs~~---~~~~~y~~~~~~af~~lG~~v~~l~~---------~~d-------~-~~~l--~ 78 (233)
T PRK05282 22 PLIAELLAG-RRKAVFIPYAGVT---QSWDDYTAKVAEALAPLGIEVTGIHR---------VAD-------P-VAAI--E 78 (233)
T ss_pred HHHHHHHcC-CCeEEEECCCCCC---CCHHHHHHHHHHHHHHCCCEEEEecc---------chh-------h-HHHH--h
Confidence 445666663 5678888765543 23566788899999998887544311 110 1 1334 5
Q ss_pred CceEEeccCCcc--------------cHHHHHHcCcceEeec
Q psy14941 358 NMKLFISHGGLL--------------GITEAVYEGIPVLGIP 385 (513)
Q Consensus 358 ~~~~~IthgG~~--------------s~~Eal~~GvP~i~~P 385 (513)
.+++++--||-. .+.|++..|+|+++.-
T Consensus 79 ~ad~I~v~GGnt~~l~~~l~~~gl~~~l~~~~~~G~~~~G~S 120 (233)
T PRK05282 79 NAEAIFVGGGNTFQLLKQLYERGLLAPIREAVKNGTPYIGWS 120 (233)
T ss_pred cCCEEEECCccHHHHHHHHHHCCcHHHHHHHHHCCCEEEEEC
Confidence 677777777732 2457778899988863
No 383
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=22.82 E-value=2.3e+02 Score=26.80 Aligned_cols=39 Identities=8% Similarity=0.095 Sum_probs=31.2
Q ss_pred ceEeEEcCCCCCChHHHHHHHHHHHHhCCCcEEEEEeecC
Q psy14941 27 SKILAIFPTPAKSHQIIFDTILVELYQRGHDLTVITQYPE 66 (513)
Q Consensus 27 ~kIL~~~p~~~~gH~~~~~~la~~L~~rGH~Vt~~~~~~~ 66 (513)
-+|+ ++...+.|=..-+..++..+..+|+.|.+++.+..
T Consensus 76 ~~i~-~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ 114 (270)
T PRK06731 76 QTIA-LIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHS 114 (270)
T ss_pred CEEE-EECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCC
Confidence 4555 66667778888888899999999999999987654
No 384
>PRK15395 methyl-galactoside ABC transporter galactose-binding periplasmic protein MglB; Provisional
Probab=22.82 E-value=4.9e+02 Score=25.21 Aligned_cols=33 Identities=6% Similarity=0.031 Sum_probs=20.6
Q ss_pred CCCccEEEEcc---chhchHHhhhhccCCCEEEEeC
Q psy14941 130 ENKYDLIITEM---FLTDAFLVIPYLYKVPYISIAS 162 (513)
Q Consensus 130 ~~~~Dlvi~d~---~~~~~~~~~a~~l~iP~i~~~~ 162 (513)
..++|.+|... ......+..+...|+|+|.+..
T Consensus 79 ~~~vdgiIi~~~~~~~~~~~l~~l~~~giPvV~vd~ 114 (330)
T PRK15395 79 AKGVKALAINLVDPAAAPTVIEKARGQDVPVVFFNK 114 (330)
T ss_pred HcCCCEEEEeccCHHHHHHHHHHHHHCCCcEEEEcC
Confidence 46799877742 1122223456677999998865
No 385
>PF10740 DUF2529: Protein of unknown function (DUF2529); InterPro: IPR019676 This entry represents a protein family conserved in the Bacillales. Their function is not known. ; PDB: 3JX9_A.
Probab=22.75 E-value=1.3e+02 Score=26.10 Aligned_cols=35 Identities=14% Similarity=0.209 Sum_probs=23.7
Q ss_pred cCceEeEEcCCCCCChHHHHHHHHHHHHhCCCcEEEEE
Q psy14941 25 QCSKILAIFPTPAKSHQIIFDTILVELYQRGHDLTVIT 62 (513)
Q Consensus 25 ~~~kIL~~~p~~~~gH~~~~~~la~~L~~rGH~Vt~~~ 62 (513)
.+=|||++.|+ +.-.-..++|+.|.+.|..++.++
T Consensus 81 ~~DRVllfs~~---~~~~e~~~~a~~L~~~gi~~v~Vs 115 (172)
T PF10740_consen 81 ETDRVLLFSPF---STDEEAVALAKQLIEQGIPFVGVS 115 (172)
T ss_dssp TT-EEEEEES----S--HHHHHHHHHHHHHT--EEEEE
T ss_pred ccceEEEEeCC---CCCHHHHHHHHHHHHCCCCEEEEE
Confidence 44588867665 344567899999999999999999
No 386
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=22.62 E-value=1.4e+02 Score=29.56 Aligned_cols=32 Identities=28% Similarity=0.417 Sum_probs=21.6
Q ss_pred cCCCceEEeccCCcccHHHHHH----------------------cCcceEeeccc
Q psy14941 355 AHPNMKLFISHGGLLGITEAVY----------------------EGIPVLGIPVF 387 (513)
Q Consensus 355 ~h~~~~~~IthgG~~s~~Eal~----------------------~GvP~i~~P~~ 387 (513)
...+++++|.=|| ||++.+.- .++|+|.+|..
T Consensus 80 ~~~~~D~IIavGG-GSviD~aK~ia~~~~~~~~~~~~~~~~~~~~~~P~i~VPTt 133 (357)
T cd08181 80 KKFNADFVIGIGG-GSPLDAAKAIAVLIKNPDLKVELYFRSKYLKALPVVAIPTT 133 (357)
T ss_pred HhcCCCEEEEeCC-chHHHHHHHHHHHHhCCCcHHHHhcccccCCCCCEEEEeCC
Confidence 3356788888888 44444332 27899999975
No 387
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=22.48 E-value=1.6e+02 Score=28.83 Aligned_cols=36 Identities=14% Similarity=0.186 Sum_probs=25.7
Q ss_pred hHHHHhccCCCccEEEEccchhchHHhhhhccCCCEEEEeCC
Q psy14941 122 NMKSIWNMENKYDLIITEMFLTDAFLVIPYLYKVPYISIASS 163 (513)
Q Consensus 122 ~l~~~l~~~~~~Dlvi~d~~~~~~~~~~a~~l~iP~i~~~~~ 163 (513)
++..+++ ..|++|+-.. +...+|..+|.|+|.+...
T Consensus 244 e~~~li~---~a~l~I~~DS---g~~HlAaA~~~P~I~iyg~ 279 (334)
T COG0859 244 ELAALIA---GADLVIGNDS---GPMHLAAALGTPTIALYGP 279 (334)
T ss_pred HHHHHHh---cCCEEEccCC---hHHHHHHHcCCCEEEEECC
Confidence 4445554 5888888643 5557999999999987753
No 388
>KOG1387|consensus
Probab=22.25 E-value=7.7e+02 Score=24.39 Aligned_cols=98 Identities=15% Similarity=0.148 Sum_probs=51.0
Q ss_pred CCcEEEecCCCccccccCCCceEEeccCCc-----ccHHHHHHcCcceEeeccccCcHHHHHHHHHcCcEEEeccCCCCH
Q psy14941 339 YKNIRTSSWMPQRDIFAHPNMKLFISHGGL-----LGITEAVYEGIPVLGIPVFGDQWANIKKLESLKAGKLLPYLEITE 413 (513)
Q Consensus 339 ~~nv~~~~~~pq~~lL~h~~~~~~IthgG~-----~s~~Eal~~GvP~i~~P~~~DQ~~na~~~~~~G~G~~l~~~~~~~ 413 (513)
+++|.+...+|..++...=+...+=-|+=+ -++.|++++|.=+|+---.|--.+--.--.-...|... .|.
T Consensus 336 ~~~v~F~~N~Py~~lv~lL~~a~iGvh~MwNEHFGIsVVEyMAAGlIpi~h~SgGP~lDIV~~~~G~~tGFla----~t~ 411 (465)
T KOG1387|consen 336 PKHVQFEKNVPYEKLVELLGKATIGVHTMWNEHFGISVVEYMAAGLIPIVHNSGGPLLDIVTPWDGETTGFLA----PTD 411 (465)
T ss_pred ccceEEEecCCHHHHHHHhccceeehhhhhhhhcchhHHHHHhcCceEEEeCCCCCceeeeeccCCccceeec----CCh
Confidence 789999999998865432222222223322 37899999997665531111000000000001122222 377
Q ss_pred HHHHHHHHHhc--CHH----HHHHHHHHHHHHh
Q psy14941 414 ETVSDALKIVL--SPE----YKENAEDLGTRFR 440 (513)
Q Consensus 414 ~~l~~ai~~ll--~~~----y~~~a~~~~~~~~ 440 (513)
++-.++|.+++ |.+ .+++|++-..++.
T Consensus 412 ~EYaE~iLkIv~~~~~~r~~~r~~AR~s~~RFs 444 (465)
T KOG1387|consen 412 EEYAEAILKIVKLNYDERNMMRRNARKSLARFG 444 (465)
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhh
Confidence 88899999988 544 4444444444443
No 389
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=22.22 E-value=5.4e+02 Score=22.57 Aligned_cols=97 Identities=12% Similarity=0.080 Sum_probs=51.3
Q ss_pred HHHHHHhhcCCCceEEEEeCcccccCCCCHHHHHHHHHHHhcCCCeEEEEEcC----CCCCCCCCCCcEEEecCCC-ccc
Q psy14941 278 EEMERFLNESHNGVIYFSMGSMLKTSSFPPDKFKAFLKAFSKIPQRVLWKFED----NDTSIFKPYKNIRTSSWMP-QRD 352 (513)
Q Consensus 278 ~~l~~~l~~~~~~~v~vs~Gs~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~----~~~~~~~~~~nv~~~~~~p-q~~ 352 (513)
.++-+++.+ ++..+|+-|+. ......+.++..+.+-.++=.+.. .+..+-- .+..++++.+. ...
T Consensus 22 ~~lG~~la~--~g~~lV~GGg~-------~GlM~a~a~ga~~~gG~viGi~p~~l~~~~~~~~~-~~~~i~~~~~~~Rk~ 91 (178)
T TIGR00730 22 AELGAYLAG--QGWGLVYGGGR-------VGLMGAIADAAMENGGTAVGVNPSGLFSGEVVHQN-LTELIEVNGMHERKA 91 (178)
T ss_pred HHHHHHHHH--CCCEEEECCCh-------HhHHHHHHHHHHhcCCeEEEecchhhhhhhccCCC-CCceEEECCHHHHHH
Confidence 345566664 45666665542 245667777776655554433321 1111101 22333444443 345
Q ss_pred cccCCCceEEeccCCcccHHHHHH---------cCcceEee
Q psy14941 353 IFAHPNMKLFISHGGLLGITEAVY---------EGIPVLGI 384 (513)
Q Consensus 353 lL~h~~~~~~IthgG~~s~~Eal~---------~GvP~i~~ 384 (513)
++....-..++--||.||+-|.+. +.+|++.+
T Consensus 92 ~m~~~sda~I~lPGG~GTL~El~e~~~~~qlg~~~kPiil~ 132 (178)
T TIGR00730 92 MMAELADAFIAMPGGFGTLEELFEVLTWAQLGIHQKPIILF 132 (178)
T ss_pred HHHHhCCEEEEcCCCcchHHHHHHHHHHHHcCCCCCCEEEE
Confidence 554444444555677899877633 58999887
No 390
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=22.21 E-value=1.4e+02 Score=24.66 Aligned_cols=39 Identities=18% Similarity=0.311 Sum_probs=30.2
Q ss_pred ccCceEeEEcCCCCCChHHHHHHHHHHHHhCCC-cEEEEEe
Q psy14941 24 QQCSKILAIFPTPAKSHQIIFDTILVELYQRGH-DLTVITQ 63 (513)
Q Consensus 24 ~~~~kIL~~~p~~~~gH~~~~~~la~~L~~rGH-~Vt~~~~ 63 (513)
-+.+.++++ +....+|.--+..++++|.++|. ++.++..
T Consensus 51 e~~adii~i-Ssl~~~~~~~~~~~~~~L~~~g~~~i~vivG 90 (132)
T TIGR00640 51 EADVHVVGV-SSLAGGHLTLVPALRKELDKLGRPDILVVVG 90 (132)
T ss_pred HcCCCEEEE-cCchhhhHHHHHHHHHHHHhcCCCCCEEEEe
Confidence 356888855 55567999999999999999997 5666654
No 391
>TIGR01284 alt_nitrog_alph nitrogenase alpha chain. This model represents the alpha chains of various forms of the nitrogen-fixing enzyme nitrogenase: vanadium-iron, iron-iron, and molybdenum-iron. Most examples of NifD, the molybdenum-iron type nitrogenase alpha chain, are excluded from this model and described instead by equivalog model TIGR01282. It appears by phylogenetic and UPGMA trees that this model represents a distinct clade of NifD homologs, in which arose several molybdenum-independent forms.
Probab=22.18 E-value=63 Score=33.34 Aligned_cols=34 Identities=29% Similarity=0.394 Sum_probs=24.6
Q ss_pred HHHHhccCCCccEEEEccchhchHHhhhhccCCCEEEEe
Q psy14941 123 MKSIWNMENKYDLIITEMFLTDAFLVIPYLYKVPYISIA 161 (513)
Q Consensus 123 l~~~l~~~~~~Dlvi~d~~~~~~~~~~a~~l~iP~i~~~ 161 (513)
+.+.++ ..+||++|.... .. .+|+++|||++.+.
T Consensus 387 ~~~~i~-~~~pDllig~~~---~~-~~a~k~gip~~~~~ 420 (457)
T TIGR01284 387 LEEIIE-KYKPDIILTGIR---EG-ELAKKLGVPYINIH 420 (457)
T ss_pred HHHHHH-hcCCCEEEecCC---cc-hhhhhcCCCEEEcc
Confidence 344455 578999998755 34 38999999988763
No 392
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=22.15 E-value=2.2e+02 Score=24.47 Aligned_cols=28 Identities=29% Similarity=0.398 Sum_probs=20.7
Q ss_pred ceEEeccCCc------ccHHHHHHcCcceEeecc
Q psy14941 359 MKLFISHGGL------LGITEAVYEGIPVLGIPV 386 (513)
Q Consensus 359 ~~~~IthgG~------~s~~Eal~~GvP~i~~P~ 386 (513)
..++++++|- +.+.||...++|||++.-
T Consensus 60 ~gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~g 93 (162)
T cd07038 60 LGALVTTYGVGELSALNGIAGAYAEHVPVVHIVG 93 (162)
T ss_pred CEEEEEcCCccHHHHHHHHHHHHHcCCCEEEEec
Confidence 3455565553 467999999999999953
No 393
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=21.88 E-value=2.9e+02 Score=27.66 Aligned_cols=42 Identities=7% Similarity=0.093 Sum_probs=31.7
Q ss_pred cCceEeEEcCCCCCChHHHHHHHHHHHHh-CCC-cEEEEEeecC
Q psy14941 25 QCSKILAIFPTPAKSHQIIFDTILVELYQ-RGH-DLTVITQYPE 66 (513)
Q Consensus 25 ~~~kIL~~~p~~~~gH~~~~~~la~~L~~-rGH-~Vt~~~~~~~ 66 (513)
...+|++++...|-|=..-...||..+.. +|+ .|.+++.+..
T Consensus 135 ~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~ 178 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSY 178 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccc
Confidence 33556668888889999999999998864 474 7888876554
No 394
>PRK06835 DNA replication protein DnaC; Validated
Probab=21.75 E-value=1.6e+02 Score=28.88 Aligned_cols=39 Identities=18% Similarity=0.303 Sum_probs=30.8
Q ss_pred cCceEeEEcCCCCCChHHHHHHHHHHHHhCCCcEEEEEee
Q psy14941 25 QCSKILAIFPTPAKSHQIIFDTILVELYQRGHDLTVITQY 64 (513)
Q Consensus 25 ~~~kIL~~~p~~~~gH~~~~~~la~~L~~rGH~Vt~~~~~ 64 (513)
...+++ ++..+|.|=..-+.++|++|.++|+.|.+++..
T Consensus 182 ~~~~Ll-l~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~ 220 (329)
T PRK06835 182 NNENLL-FYGNTGTGKTFLSNCIAKELLDRGKSVIYRTAD 220 (329)
T ss_pred cCCcEE-EECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHH
Confidence 345555 777777777778889999999999999888763
No 395
>COG3046 Uncharacterized protein related to deoxyribodipyrimidine photolyase [General function prediction only]
Probab=21.74 E-value=1e+02 Score=30.71 Aligned_cols=26 Identities=12% Similarity=-0.038 Sum_probs=23.0
Q ss_pred hHHHHHHHHHHHHhCCCcEEEEEeec
Q psy14941 40 HQIIFDTILVELYQRGHDLTVITQYP 65 (513)
Q Consensus 40 H~~~~~~la~~L~~rGH~Vt~~~~~~ 65 (513)
|+..|...|++|..+|++|++...++
T Consensus 51 v~aAMR~Fad~LraeG~~V~Y~~~~~ 76 (505)
T COG3046 51 VFAAMRHFADELRAEGLKVRYERADD 76 (505)
T ss_pred HHHHHHHHHHHHhhCCceeEEEEcCC
Confidence 56789999999999999999988755
No 396
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=21.60 E-value=1.9e+02 Score=27.80 Aligned_cols=39 Identities=13% Similarity=0.206 Sum_probs=32.4
Q ss_pred EeEEcCCCCCChHHHHHHHHHHHHhCCCcEEEEEeecCC
Q psy14941 29 ILAIFPTPAKSHQIIFDTILVELYQRGHDLTVITQYPET 67 (513)
Q Consensus 29 IL~~~p~~~~gH~~~~~~la~~L~~rGH~Vt~~~~~~~~ 67 (513)
+++++.-+|-|=..-...||.+|+++|++|.++-.++..
T Consensus 2 vIav~gKGGvGKTT~a~nLA~~La~~g~rVLlID~Dpq~ 40 (296)
T TIGR02016 2 IIAIYGKGGSGKSFTTTNLSHMMAEMGKRVLQLGCDPKH 40 (296)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEecCCC
Confidence 444557778899999999999999999999998876643
No 397
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=21.45 E-value=1.7e+02 Score=26.28 Aligned_cols=37 Identities=14% Similarity=0.210 Sum_probs=30.4
Q ss_pred eEEcCCCCCChHHHHHHHHHHHHhCCCcEEEEEeecC
Q psy14941 30 LAIFPTPAKSHQIIFDTILVELYQRGHDLTVITQYPE 66 (513)
Q Consensus 30 L~~~p~~~~gH~~~~~~la~~L~~rGH~Vt~~~~~~~ 66 (513)
+.+..-+|-|=......||.+|+++|++|.++-.++.
T Consensus 3 iav~gKGGvGKTt~~~nLA~~la~~G~rvLliD~D~q 39 (212)
T cd02117 3 IAIYGKGGIGKSTTSQNLSAALAEMGKKVLQVGCDPK 39 (212)
T ss_pred EEEECCCcCcHHHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 3455677889999999999999999999988866543
No 398
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=21.45 E-value=87 Score=27.04 Aligned_cols=28 Identities=25% Similarity=0.484 Sum_probs=22.3
Q ss_pred CceEEeccCCc------ccHHHHHHcCcceEeec
Q psy14941 358 NMKLFISHGGL------LGITEAVYEGIPVLGIP 385 (513)
Q Consensus 358 ~~~~~IthgG~------~s~~Eal~~GvP~i~~P 385 (513)
+..++++|+|- +.+.||...++|||++.
T Consensus 60 ~~gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~ 93 (162)
T cd07037 60 RPVAVVCTSGTAVANLLPAVVEAYYSGVPLLVLT 93 (162)
T ss_pred CCEEEEECCchHHHHHhHHHHHHHhcCCCEEEEE
Confidence 44667777774 46789999999999995
No 399
>KOG0129|consensus
Probab=21.41 E-value=1.5e+02 Score=30.32 Aligned_cols=95 Identities=18% Similarity=0.303 Sum_probs=60.6
Q ss_pred cEEEEeccCccCCCccCCC-ceEEeCcccccCCCCCcHHHHHHhhcCCCceEEEEeCccccc------CCCCHHHHHHHH
Q psy14941 242 SLTLVNTHHTINIARPLPA-NVVEIGGIHVKPAKKLNEEMERFLNESHNGVIYFSMGSMLKT------SSFPPDKFKAFL 314 (513)
Q Consensus 242 ~l~l~~s~~~l~~~~p~~p-~~~~vG~l~~~~~~~l~~~l~~~l~~~~~~~v~vs~Gs~~~~------~~~~~~~~~~~~ 314 (513)
...+.++++..+..+|+-| +++|||+++..- --++|..++++--.+|+|+..=|-..- .-....-.+..+
T Consensus 351 PW~laDs~fv~d~sq~lDprrTVFVGgvprpl---~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi 427 (520)
T KOG0129|consen 351 PWVLADSDFVLDHNQPIDPRRTVFVGGLPRPL---TAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYI 427 (520)
T ss_pred eeEeccchhhhccCcccCccceEEecCCCCcc---hHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHH
Confidence 4567888888998899755 689999987432 247888999966679999987665210 011122344555
Q ss_pred HHHhcCCCeEEEEEcCCCCCCCCCCCcEEEecCC
Q psy14941 315 KAFSKIPQRVLWKFEDNDTSIFKPYKNIRTSSWM 348 (513)
Q Consensus 315 ~~~~~~~~~~i~~~~~~~~~~~~~~~nv~~~~~~ 348 (513)
.|++. +||-.-.. + . .+.|.|.+|+
T Consensus 428 ~AIsa---rFvql~h~----d-~-~KRVEIkPYv 452 (520)
T KOG0129|consen 428 KAISA---RFVQLDHT----D-I-DKRVEIKPYV 452 (520)
T ss_pred HHHhh---heEEEecc----c-c-ceeeeeccee
Confidence 55543 44443222 2 3 5678888887
No 400
>cd06315 PBP1_ABC_sugar_binding_like_6 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=21.40 E-value=3.5e+02 Score=25.29 Aligned_cols=36 Identities=8% Similarity=0.130 Sum_probs=21.9
Q ss_pred eEeEEcCCCCCChHH-HHHHHHHHHHhCCCcEEEEEe
Q psy14941 28 KILAIFPTPAKSHQI-IFDTILVELYQRGHDLTVITQ 63 (513)
Q Consensus 28 kIL~~~p~~~~gH~~-~~~~la~~L~~rGH~Vt~~~~ 63 (513)
+|.+++|......+. ....+.+++.+.|+++++..+
T Consensus 2 ~ig~i~~~~~~~~~~~~~~gi~~~a~~~gy~~~~~~~ 38 (280)
T cd06315 2 NIIFVASDLKNGGILGVGEGVREAAKAIGWNLRILDG 38 (280)
T ss_pred eEEEEecccCCcHHHHHHHHHHHHHHHcCcEEEEECC
Confidence 455566654333332 344666888889999877643
No 401
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=21.36 E-value=1.5e+02 Score=29.93 Aligned_cols=42 Identities=19% Similarity=0.237 Sum_probs=35.8
Q ss_pred hccCceEeEEcCCCCCChHHHHHHHHHHHHhCCCcEEEEEeecC
Q psy14941 23 IQQCSKILAIFPTPAKSHQIIFDTILVELYQRGHDLTVITQYPE 66 (513)
Q Consensus 23 ~~~~~kIL~~~p~~~~gH~~~~~~la~~L~~rGH~Vt~~~~~~~ 66 (513)
.+.+.=|| +-.-|+-|----+++++..|+++| .|.+++.+..
T Consensus 90 ~V~Gs~iL-IgGdPGIGKSTLLLQva~~lA~~~-~vLYVsGEES 131 (456)
T COG1066 90 LVPGSVIL-IGGDPGIGKSTLLLQVAARLAKRG-KVLYVSGEES 131 (456)
T ss_pred cccccEEE-EccCCCCCHHHHHHHHHHHHHhcC-cEEEEeCCcC
Confidence 45666777 778889999999999999999999 9999998653
No 402
>cd06280 PBP1_LacI_like_4 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=21.35 E-value=4.2e+02 Score=24.25 Aligned_cols=35 Identities=9% Similarity=0.079 Sum_probs=21.6
Q ss_pred EeEEcCCCCC-ChHHHHHHHHHHHHhCCCcEEEEEe
Q psy14941 29 ILAIFPTPAK-SHQIIFDTILVELYQRGHDLTVITQ 63 (513)
Q Consensus 29 IL~~~p~~~~-gH~~~~~~la~~L~~rGH~Vt~~~~ 63 (513)
|.+++|.... -.......+.+++.+.|+++.+...
T Consensus 2 Ig~i~p~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~ 37 (263)
T cd06280 2 VGLIVADIRNPFFTAVSRAVEDAAYRAGLRVILCNT 37 (263)
T ss_pred EEEEecccccccHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 3345555432 2333456777888899999876644
No 403
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=21.35 E-value=1e+02 Score=32.29 Aligned_cols=34 Identities=24% Similarity=0.299 Sum_probs=25.2
Q ss_pred HHHHhccCCCccEEEEccchhchHHhhhhccCCCEEEEe
Q psy14941 123 MKSIWNMENKYDLIITEMFLTDAFLVIPYLYKVPYISIA 161 (513)
Q Consensus 123 l~~~l~~~~~~Dlvi~d~~~~~~~~~~a~~l~iP~i~~~ 161 (513)
+.++++ ..++|++|.... +- .+|+.+|+|++.+.
T Consensus 429 l~~~l~-~~~~DlliG~s~---~k-~~a~~~giPlir~g 462 (515)
T TIGR01286 429 LRSLVF-TEPVDFLIGNSY---GK-YIQRDTLVPLIRIG 462 (515)
T ss_pred HHHHHh-hcCCCEEEECch---HH-HHHHHcCCCEEEec
Confidence 344454 578999999865 34 38999999988765
No 404
>PRK06270 homoserine dehydrogenase; Provisional
Probab=21.29 E-value=1.3e+02 Score=29.54 Aligned_cols=58 Identities=10% Similarity=0.001 Sum_probs=38.8
Q ss_pred ccccccCCCceEEec------cCC---cccHHHHHHcCcceEe---eccccCcHHHHHHHHHcCcEEEec
Q psy14941 350 QRDIFAHPNMKLFIS------HGG---LLGITEAVYEGIPVLG---IPVFGDQWANIKKLESLKAGKLLP 407 (513)
Q Consensus 350 q~~lL~h~~~~~~It------hgG---~~s~~Eal~~GvP~i~---~P~~~DQ~~na~~~~~~G~G~~l~ 407 (513)
-.+++.++.++++|- |+| ..-+.+|+.+|+++++ -|+...-..-.+.+++.|..+...
T Consensus 81 ~~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~~g~~~~~e 150 (341)
T PRK06270 81 GLEVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKELKELAKKNGVRFRYE 150 (341)
T ss_pred HHHHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHHHHcCCEEEEe
Confidence 346676777787776 443 3345899999999999 477543344445566778877653
No 405
>PF14979 TMEM52: Transmembrane 52
Probab=21.28 E-value=1.1e+02 Score=25.57 Aligned_cols=28 Identities=25% Similarity=0.383 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHH-HHHHHHHhhccccccc
Q psy14941 483 IALVLIVGLVSV-CFVLKYLCGSLVRRKH 510 (513)
Q Consensus 483 v~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 510 (513)
||++++++++++ +-+...|.|+||.+|.
T Consensus 22 IwLill~~~llLLCG~ta~C~rfCClrk~ 50 (154)
T PF14979_consen 22 IWLILLIGFLLLLCGLTASCVRFCCLRKQ 50 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 455554443333 3344455565666654
No 406
>PF02525 Flavodoxin_2: Flavodoxin-like fold; InterPro: IPR003680 This family consists of a domain with a flavodoxin-like fold. The family includes bacterial and eukaryotic NAD(P)H dehydrogenase (quinone) 1.6.99.2 from EC. These enzymes catalyse the NAD(P)H-dependent two-electron reductions of quinones and protect cells against damage by free radicals and reactive oxygen species []. This enzyme uses a FAD cofactor. The equation for this reaction is NAD(P)H + acceptor = NAD(P)(+) + reduced acceptor. This enzyme is also involved in the bioactivation of prodrugs used in chemotherapy []. The family also includes acyl carrier protein phosphodiesterase 3.1.4.14 from EC. This enzyme converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine residue from ACP []. This family is related to FMN_red IPR005025 from INTERPRO and Flavodoxin_1 IPR008254 from INTERPRO.; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050662 coenzyme binding; PDB: 1T5B_B 1DXQ_B 2B3D_A 2Z9D_B 2Z9C_A 2Z98_A 2D5I_A 2Z9B_A 1TIK_A 1V4B_A ....
Probab=21.28 E-value=1.4e+02 Score=26.49 Aligned_cols=38 Identities=32% Similarity=0.503 Sum_probs=25.8
Q ss_pred ceEeEEcCCCCC--Ch-HHHHHHHHHHHHhCC-CcEEEEEee
Q psy14941 27 SKILAIFPTPAK--SH-QIIFDTILVELYQRG-HDLTVITQY 64 (513)
Q Consensus 27 ~kIL~~~p~~~~--gH-~~~~~~la~~L~~rG-H~Vt~~~~~ 64 (513)
.|||++..+|-. |. ..-...++++|.++| |+|+++--.
T Consensus 1 mkiLvI~asp~~~~S~s~~l~~~~~~~~~~~~~~~v~~~dL~ 42 (199)
T PF02525_consen 1 MKILVINASPRPEGSFSRALADAFLEGLQEAGPHEVEIRDLY 42 (199)
T ss_dssp EEEEEEE--SSTTTSHHHHHHHHHHHHHHHHTTSEEEEEETT
T ss_pred CEEEEEEcCCCCccCHHHHHHHHHHHHHHHcCCCEEEEEECc
Confidence 389988888854 33 224567888899999 998877653
No 407
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=21.22 E-value=87 Score=31.51 Aligned_cols=39 Identities=21% Similarity=0.183 Sum_probs=30.7
Q ss_pred cCceEeEEcCCCCCChHHHHHHHHHHHHhCCCcEEEEEeec
Q psy14941 25 QCSKILAIFPTPAKSHQIIFDTILVELYQRGHDLTVITQYP 65 (513)
Q Consensus 25 ~~~kIL~~~p~~~~gH~~~~~~la~~L~~rGH~Vt~~~~~~ 65 (513)
.+.||++.++ |.+...-...++++|.+.|++|.++.+..
T Consensus 2 ~~k~IllgiT--GSiaa~~~~~ll~~L~~~g~~V~vv~T~~ 40 (390)
T TIGR00521 2 ENKKILLGVT--GGIAAYKTVELVRELVRQGAEVKVIMTEA 40 (390)
T ss_pred CCCEEEEEEe--CHHHHHHHHHHHHHHHhCCCEEEEEECHh
Confidence 4678884444 45777889999999999999999888754
No 408
>cd03109 DTBS Dethiobiotin synthetase (DTBS) is the penultimate enzyme in the biotin biosynthesis pathway in Escherichia coli and other microorganisms. The enzyme catalyzes formation of the ureido ring of dethiobiotin from (7R,8S)-7,8-diaminononanoic acid (DAPA) and carbon dioxide. The enzyme utilizes carbon dioxide instead of hydrogen carbonate as substrate and is dependent on ATP and divalent metal ions as cofactors.
Probab=21.18 E-value=1.9e+02 Score=23.79 Aligned_cols=36 Identities=6% Similarity=0.076 Sum_probs=29.8
Q ss_pred eEEcCCCCCChHHHHHHHHHHHHhCCCcEEEEEeec
Q psy14941 30 LAIFPTPAKSHQIIFDTILVELYQRGHDLTVITQYP 65 (513)
Q Consensus 30 L~~~p~~~~gH~~~~~~la~~L~~rGH~Vt~~~~~~ 65 (513)
.++....+.|=...+..+++.|.++|.+|.++-+..
T Consensus 2 ~~~~~~~~~Gkt~~~~~l~~~l~~~~~~v~~~kp~~ 37 (134)
T cd03109 2 MGFGTGTDIGKTVATAILARALKEKGYRVAPLKPVQ 37 (134)
T ss_pred EEEeCCCCcCHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 345566678899999999999999999999997744
No 409
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=21.18 E-value=4.7e+02 Score=23.83 Aligned_cols=33 Identities=18% Similarity=0.185 Sum_probs=21.3
Q ss_pred CCCccEEEEccchh--chHHhhhhccCCCEEEEeC
Q psy14941 130 ENKYDLIITEMFLT--DAFLVIPYLYKVPYISIAS 162 (513)
Q Consensus 130 ~~~~Dlvi~d~~~~--~~~~~~a~~l~iP~i~~~~ 162 (513)
..++|.+|...... ...+..++..|+|+|.+.+
T Consensus 53 ~~~vdgiii~~~~~~~~~~~~~~~~~~ipvV~~~~ 87 (266)
T cd06282 53 RQRVDGLILTVADAATSPALDLLDAERVPYVLAYN 87 (266)
T ss_pred hcCCCEEEEecCCCCchHHHHHHhhCCCCEEEEec
Confidence 35799988754322 1223456778999888765
No 410
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=21.08 E-value=1.1e+02 Score=25.67 Aligned_cols=39 Identities=13% Similarity=0.167 Sum_probs=32.6
Q ss_pred cCceEeEEcCCCCCChHHHHHHHHHHHHhCCCcEEEEEee
Q psy14941 25 QCSKILAIFPTPAKSHQIIFDTILVELYQRGHDLTVITQY 64 (513)
Q Consensus 25 ~~~kIL~~~p~~~~gH~~~~~~la~~L~~rGH~Vt~~~~~ 64 (513)
...||| +.+.+.-||-.-..-+++.|++.|.+|......
T Consensus 11 ~rprvl-vak~GlDgHd~gakvia~~l~d~GfeVi~~g~~ 49 (143)
T COG2185 11 ARPRVL-VAKLGLDGHDRGAKVIARALADAGFEVINLGLF 49 (143)
T ss_pred CCceEE-EeccCccccccchHHHHHHHHhCCceEEecCCc
Confidence 457888 666668899999999999999999999876653
No 411
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=21.01 E-value=1e+02 Score=30.95 Aligned_cols=40 Identities=10% Similarity=0.149 Sum_probs=28.0
Q ss_pred HhHHHHhccCCCccEEEEccchhchHHh---------hhhccCCCEEEEe
Q psy14941 121 ENMKSIWNMENKYDLIITEMFLTDAFLV---------IPYLYKVPYISIA 161 (513)
Q Consensus 121 ~~l~~~l~~~~~~Dlvi~d~~~~~~~~~---------~a~~l~iP~i~~~ 161 (513)
..+.+.++ ..+||++|+...|..+-++ +.++++||.+.-.
T Consensus 66 ~~i~~mv~-k~~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vt~M 114 (431)
T TIGR01918 66 ARVLEMLK-DKEPDIFIAGPAFNAGRYGVACGEICKVVQDKLNVPAVTSM 114 (431)
T ss_pred HHHHHHHH-hcCCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEEe
Confidence 34566676 7889999999876644332 4456899977644
No 412
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=20.99 E-value=79 Score=28.00 Aligned_cols=38 Identities=11% Similarity=0.071 Sum_probs=28.9
Q ss_pred ceEeEEcCCCCCChHHHHHHHHHHHHh-CCCcEEEEEeecC
Q psy14941 27 SKILAIFPTPAKSHQIIFDTILVELYQ-RGHDLTVITQYPE 66 (513)
Q Consensus 27 ~kIL~~~p~~~~gH~~~~~~la~~L~~-rGH~Vt~~~~~~~ 66 (513)
.||++.++ |.+...-...++++|.+ .||+|.++.+...
T Consensus 2 k~IllgVT--Gsiaa~ka~~l~~~L~k~~g~~V~vv~T~~A 40 (185)
T PRK06029 2 KRLIVGIS--GASGAIYGVRLLQVLRDVGEIETHLVISQAA 40 (185)
T ss_pred CEEEEEEE--CHHHHHHHHHHHHHHHhhcCCeEEEEECHHH
Confidence 46774443 34568889999999999 5999999988654
No 413
>PF10577 UPF0560: Uncharacterised protein family UPF0560; InterPro: IPR018890 This family of proteins has no known function.
Probab=20.98 E-value=1.5e+02 Score=32.44 Aligned_cols=14 Identities=36% Similarity=0.361 Sum_probs=8.1
Q ss_pred hhhccCCCEEEEeC
Q psy14941 149 IPYLYKVPYISIAS 162 (513)
Q Consensus 149 ~a~~l~iP~i~~~~ 162 (513)
+..++|.+++.+.+
T Consensus 45 ~~yrlg~~l~v~a~ 58 (807)
T PF10577_consen 45 FPYRLGTWLIVTAS 58 (807)
T ss_pred EeccCCCeEEEEEe
Confidence 44556666666554
No 414
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=20.98 E-value=1e+02 Score=30.95 Aligned_cols=40 Identities=5% Similarity=0.002 Sum_probs=28.0
Q ss_pred HhHHHHhccCCCccEEEEccchhchHHh---------hhhccCCCEEEEe
Q psy14941 121 ENMKSIWNMENKYDLIITEMFLTDAFLV---------IPYLYKVPYISIA 161 (513)
Q Consensus 121 ~~l~~~l~~~~~~Dlvi~d~~~~~~~~~---------~a~~l~iP~i~~~ 161 (513)
.++.+.++ ..+||++|+...|..+-++ +.++++||.+.-.
T Consensus 66 ~~i~~mv~-k~~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vtaM 114 (431)
T TIGR01917 66 AKVLEMIK-GANPDIFIAGPAFNAGRYGMAAGAITKAVQDELGIKAFTAM 114 (431)
T ss_pred HHHHHHHH-hcCCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEEe
Confidence 35566676 7899999999876644332 4456899977644
No 415
>TIGR02699 archaeo_AfpA archaeoflavoprotein AfpA. The prototypical member of this archaeal protein family is AF1518 from Archaeoglobus fulgidus. This homodimer with two non-covalently bound FMN cofactors can receive electrons from ferredoxin, but not from a number of other electron donors such as NADH or rubredoxin. It can then donate electrons to various reductases.
Probab=20.98 E-value=91 Score=27.31 Aligned_cols=30 Identities=10% Similarity=0.224 Sum_probs=23.7
Q ss_pred CCChHHH-HHHHHHHHH-hCCCcEEEEEeecC
Q psy14941 37 AKSHQII-FDTILVELY-QRGHDLTVITQYPE 66 (513)
Q Consensus 37 ~~gH~~~-~~~la~~L~-~rGH~Vt~~~~~~~ 66 (513)
|.||... ...+.++|+ ++||+|.++.+...
T Consensus 8 Gsg~~l~e~v~~l~~L~~~~g~eV~vv~S~~A 39 (174)
T TIGR02699 8 GSGDKLPETYSIMKDVKNRYGDEIDVFLSKAG 39 (174)
T ss_pred ccHHHHHHHHHHHHHHHHhcCCEEEEEECHhH
Confidence 3478866 889999998 46999999988554
No 416
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=20.95 E-value=2.2e+02 Score=28.68 Aligned_cols=43 Identities=9% Similarity=0.118 Sum_probs=35.8
Q ss_pred cCceEeEEcCCCCCChHHHHHHHHHHHHhCCCcEEEEEeecCC
Q psy14941 25 QCSKILAIFPTPAKSHQIIFDTILVELYQRGHDLTVITQYPET 67 (513)
Q Consensus 25 ~~~kIL~~~p~~~~gH~~~~~~la~~L~~rGH~Vt~~~~~~~~ 67 (513)
...+|++++...|.|=..-+..||..+..+|++|.+++.++.+
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR 246 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFR 246 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccC
Confidence 4467776777778899999999999999999999999987654
No 417
>PRK14092 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
Probab=20.93 E-value=1.8e+02 Score=25.22 Aligned_cols=32 Identities=16% Similarity=0.381 Sum_probs=23.2
Q ss_pred CCceEEEEeCcccccCCCCHHHHHHHHHHHhcCCC
Q psy14941 288 HNGVIYFSMGSMLKTSSFPPDKFKAFLKAFSKIPQ 322 (513)
Q Consensus 288 ~~~~v~vs~Gs~~~~~~~~~~~~~~~~~~~~~~~~ 322 (513)
.+..+|+++||.. ..+.+.++..++.+++.+.
T Consensus 6 ~~~~v~i~LGSNl---g~~~~~l~~A~~~L~~~~~ 37 (163)
T PRK14092 6 ASALAYVGLGANL---GDAAATLRSVLAELAAAPG 37 (163)
T ss_pred cCCEEEEEecCch---HhHHHHHHHHHHHHHhCCC
Confidence 4567899999987 2356667777777776555
No 418
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=20.88 E-value=89 Score=27.55 Aligned_cols=37 Identities=16% Similarity=0.133 Sum_probs=26.6
Q ss_pred eEeEEcCCCCCChHHHHHHHHHHHHhCCCcEEEEEeecC
Q psy14941 28 KILAIFPTPAKSHQIIFDTILVELYQRGHDLTVITQYPE 66 (513)
Q Consensus 28 kIL~~~p~~~~gH~~~~~~la~~L~~rGH~Vt~~~~~~~ 66 (513)
||++.++ |.+=..-...++++|.++|++|.++.++..
T Consensus 1 ~illgvt--Gsiaa~ka~~lir~L~~~g~~V~vv~T~~A 37 (181)
T TIGR00421 1 RIVVAMT--GASGVIYGIRLLEVLKEAGVEVHLVISDWA 37 (181)
T ss_pred CEEEEEE--CHHHHHHHHHHHHHHHHCCCEEEEEECccH
Confidence 4553333 334556668999999999999999988653
No 419
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=20.88 E-value=1.4e+02 Score=28.67 Aligned_cols=38 Identities=16% Similarity=0.204 Sum_probs=29.7
Q ss_pred ceEeEEcCCCCCChHH---HHHHHHHHHHhCCCcEEEEEee
Q psy14941 27 SKILAIFPTPAKSHQI---IFDTILVELYQRGHDLTVITQY 64 (513)
Q Consensus 27 ~kIL~~~p~~~~gH~~---~~~~la~~L~~rGH~Vt~~~~~ 64 (513)
.||.+++...+.=|-. -...+.++|.++||+|.++...
T Consensus 5 ~~v~~~~g~~~~~~~~~~~s~~~i~~al~~~g~~v~~i~~~ 45 (304)
T PRK01372 5 GKVAVLMGGTSAEREVSLNSGAAVLAALREAGYDAHPIDPG 45 (304)
T ss_pred cEEEEEeCCCCCCceEeHHhHHHHHHHHHHCCCEEEEEecC
Confidence 4777677666665666 7789999999999999988653
No 420
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=20.88 E-value=1.8e+02 Score=24.31 Aligned_cols=37 Identities=16% Similarity=0.337 Sum_probs=27.2
Q ss_pred EeEEcCCCCCChHHHHHHHHHHHHhCCCcEEEEEeec
Q psy14941 29 ILAIFPTPAKSHQIIFDTILVELYQRGHDLTVITQYP 65 (513)
Q Consensus 29 IL~~~p~~~~gH~~~~~~la~~L~~rGH~Vt~~~~~~ 65 (513)
++.++..-..|=...+..|+++|.++|++|.++-...
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~ik~~~ 38 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINELKRRGYRVAVIKHTD 38 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEE-S
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhHcCCceEEEEEcc
Confidence 4446666677999999999999999999999665533
No 421
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=20.70 E-value=1.6e+02 Score=24.20 Aligned_cols=38 Identities=18% Similarity=0.430 Sum_probs=25.9
Q ss_pred CceEEEEeCcccccCCCCHHHHHHHHHHHh-cCCC-eEEEEEc
Q psy14941 289 NGVIYFSMGSMLKTSSFPPDKFKAFLKAFS-KIPQ-RVLWKFE 329 (513)
Q Consensus 289 ~~~v~vs~Gs~~~~~~~~~~~~~~~~~~~~-~~~~-~~i~~~~ 329 (513)
++++++++||..+ ...+.+..+.+.++ +.|+ .|-|.+-
T Consensus 1 ~aillv~fGS~~~---~~~~~~~~i~~~l~~~~p~~~V~~aft 40 (127)
T cd03412 1 KAILLVSFGTSYP---TAEKTIDAIEDKVRAAFPDYEVRWAFT 40 (127)
T ss_pred CeEEEEeCCCCCH---HHHHHHHHHHHHHHHHCCCCeEEEEec
Confidence 3689999999862 34456777777774 3565 6777654
No 422
>PF10933 DUF2827: Protein of unknown function (DUF2827); InterPro: IPR021234 This is a family of uncharacterised proteins found in Burkholderia.
Probab=20.68 E-value=4.1e+02 Score=26.28 Aligned_cols=96 Identities=21% Similarity=0.277 Sum_probs=62.9
Q ss_pred cEEEecCCCccccccCCCceEEeccCCcc----cHHHHHHcCcceEeeccccCcHHHHHHHHHcCcEEEeccCCCCHHH-
Q psy14941 341 NIRTSSWMPQRDIFAHPNMKLFISHGGLL----GITEAVYEGIPVLGIPVFGDQWANIKKLESLKAGKLLPYLEITEET- 415 (513)
Q Consensus 341 nv~~~~~~pq~~lL~h~~~~~~IthgG~~----s~~Eal~~GvP~i~~P~~~DQ~~na~~~~~~G~G~~l~~~~~~~~~- 415 (513)
...+.+..+-.+.|+ ..+|++|+|==-| ...|+++-|=|+|- |+..+.+ +|..-+ +++..+
T Consensus 254 kasfegR~~~p~fla-~~tD~VvSHqWeN~lNYlY~daLyggYPLVH---------NS~~l~d--~GYYY~--~fD~~~G 319 (364)
T PF10933_consen 254 KASFEGRFDFPDFLA-QHTDAVVSHQWENPLNYLYYDALYGGYPLVH---------NSPLLKD--VGYYYP--DFDAFEG 319 (364)
T ss_pred eeEEeeecChHHHHH-hCCCEEEeccccchhhHHHHHHHhcCCCccc---------Ccchhcc--cCcCCC--CccHHHH
Confidence 344555566666665 4589999995433 35899999999974 5555553 777766 444443
Q ss_pred ---HHHHHHHhc-C-HHHHHHHHHHHHHHhcCCCChHHHHHH
Q psy14941 416 ---VSDALKIVL-S-PEYKENAEDLGTRFRDRPQSPLEVAIY 452 (513)
Q Consensus 416 ---l~~ai~~ll-~-~~y~~~a~~~~~~~~~~~~~~~~~a~~ 452 (513)
|.+|+++=- | ++|+++++++-..+.-. ++....++
T Consensus 320 ~r~L~~A~~~HD~~~~~Y~~ra~~~l~~~~p~--n~~nv~~y 359 (364)
T PF10933_consen 320 ARQLLRAIREHDADLDAYRARARRLLDRLSPE--NPANVRAY 359 (364)
T ss_pred HHHHHHHHHHccccHHHHHHHHHHHHHhhCCC--CHHHHHHH
Confidence 444444444 3 78999999998888543 65554443
No 423
>KOG3339|consensus
Probab=20.59 E-value=3.1e+02 Score=24.24 Aligned_cols=28 Identities=14% Similarity=0.110 Sum_probs=21.8
Q ss_pred cCceEeEEcCCCCCChHHHHHHHHHHHHhC
Q psy14941 25 QCSKILAIFPTPAKSHQIIFDTILVELYQR 54 (513)
Q Consensus 25 ~~~kIL~~~p~~~~gH~~~~~~la~~L~~r 54 (513)
++++++++. ++.||..=|++|.+.|.++
T Consensus 37 ~s~~~lVvl--GSGGHT~EMlrLl~~l~~~ 64 (211)
T KOG3339|consen 37 KSLSTLVVL--GSGGHTGEMLRLLEALQDL 64 (211)
T ss_pred CcceEEEEE--cCCCcHHHHHHHHHHHHhh
Confidence 345788554 4569999999999999765
No 424
>cd06284 PBP1_LacI_like_6 Ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group includes the ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors and are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=20.56 E-value=4.5e+02 Score=23.99 Aligned_cols=34 Identities=24% Similarity=0.225 Sum_probs=19.8
Q ss_pred EeEEcCCCCCChHH-HHHHHHHHHHhCCCcEEEEE
Q psy14941 29 ILAIFPTPAKSHQI-IFDTILVELYQRGHDLTVIT 62 (513)
Q Consensus 29 IL~~~p~~~~gH~~-~~~~la~~L~~rGH~Vt~~~ 62 (513)
|.+++|......+. ....+.+++++.|.+|.+..
T Consensus 2 i~~v~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~ 36 (267)
T cd06284 2 ILVLVPDIANPFFSEILKGIEDEAREAGYGVLLGD 36 (267)
T ss_pred EEEEECCCCCccHHHHHHHHHHHHHHcCCeEEEec
Confidence 44456654332222 34566777888888876554
No 425
>COG0716 FldA Flavodoxins [Energy production and conversion]
Probab=20.49 E-value=1.7e+02 Score=24.72 Aligned_cols=40 Identities=18% Similarity=0.223 Sum_probs=28.8
Q ss_pred ceEeEEcCCCCCChHHHHHHHHHHHHhCCCcEEEEEeecC
Q psy14941 27 SKILAIFPTPAKSHQIIFDTILVELYQRGHDLTVITQYPE 66 (513)
Q Consensus 27 ~kIL~~~p~~~~gH~~~~~~la~~L~~rGH~Vt~~~~~~~ 66 (513)
+||++++.+.+..=-.....+++.|-+.||+|++...+..
T Consensus 2 ~ki~Ivy~S~tGnTe~vA~~i~~~l~~~~~~~~~~~~~~~ 41 (151)
T COG0716 2 MKILIVYGSRTGNTEKVAEIIAEELGADGFEVDIDIRPGI 41 (151)
T ss_pred CeEEEEEEcCCCcHHHHHHHHHHHhccCCceEEEeecCCc
Confidence 5788777776655556777888888899999966555433
No 426
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=20.48 E-value=4e+02 Score=24.59 Aligned_cols=32 Identities=6% Similarity=0.066 Sum_probs=20.1
Q ss_pred CCccEEEEccchh---chHHhhhhccCCCEEEEeC
Q psy14941 131 NKYDLIITEMFLT---DAFLVIPYLYKVPYISIAS 162 (513)
Q Consensus 131 ~~~Dlvi~d~~~~---~~~~~~a~~l~iP~i~~~~ 162 (513)
.++|.+|...... ...+..+...|+|+|.+..
T Consensus 56 ~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~ 90 (275)
T cd06320 56 KGYKGLLFSPISDVNLVPAVERAKKKGIPVVNVND 90 (275)
T ss_pred hCCCEEEECCCChHHhHHHHHHHHHCCCeEEEECC
Confidence 5799887764321 1222355667999997754
No 427
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=20.44 E-value=5.4e+02 Score=24.50 Aligned_cols=35 Identities=17% Similarity=0.169 Sum_probs=21.3
Q ss_pred HHHHhccCCCccEEEEccchhchHHhhhhccCCCEEEEeC
Q psy14941 123 MKSIWNMENKYDLIITEMFLTDAFLVIPYLYKVPYISIAS 162 (513)
Q Consensus 123 l~~~l~~~~~~Dlvi~d~~~~~~~~~~a~~l~iP~i~~~~ 162 (513)
+.+.+. ..|++|+-.-... . .=|-.+|+|.+.+-.
T Consensus 244 ~~~~m~---~ad~vIs~~G~~t-~-~Ea~~~g~P~l~ip~ 278 (318)
T PF13528_consen 244 FAELMA---AADLVISKGGYTT-I-SEALALGKPALVIPR 278 (318)
T ss_pred HHHHHH---hCCEEEECCCHHH-H-HHHHHcCCCEEEEeC
Confidence 445554 3799998643221 2 245567999887654
No 428
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=20.34 E-value=1.7e+02 Score=27.57 Aligned_cols=38 Identities=16% Similarity=0.258 Sum_probs=31.1
Q ss_pred EeEEcCCCCCChHHHHHHHHHHHHhCCCcEEEEEeecC
Q psy14941 29 ILAIFPTPAKSHQIIFDTILVELYQRGHDLTVITQYPE 66 (513)
Q Consensus 29 IL~~~p~~~~gH~~~~~~la~~L~~rGH~Vt~~~~~~~ 66 (513)
+.+++.-+|-|=..-+..||.+|+++|++|.++=.++.
T Consensus 2 ~ia~~gKGGVGKTT~a~nLA~~La~~G~~VlliD~D~q 39 (275)
T TIGR01287 2 QIAIYGKGGIGKSTTTQNIAAALAEMGKKVMIVGCDPK 39 (275)
T ss_pred eeEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 33466777889999999999999999999988866543
No 429
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=20.24 E-value=2.2e+02 Score=26.54 Aligned_cols=37 Identities=16% Similarity=0.216 Sum_probs=30.8
Q ss_pred EeEEcCCCCCChHHHHHHHHHHHHhCCCcEEEEEeec
Q psy14941 29 ILAIFPTPAKSHQIIFDTILVELYQRGHDLTVITQYP 65 (513)
Q Consensus 29 IL~~~p~~~~gH~~~~~~la~~L~~rGH~Vt~~~~~~ 65 (513)
|.+..+-+|-|=..-+..||..|+++|++|..+--++
T Consensus 4 iai~s~kGGvG~TTltAnLA~aL~~~G~~VlaID~dp 40 (243)
T PF06564_consen 4 IAIVSPKGGVGKTTLTANLAWALARLGESVLAIDLDP 40 (243)
T ss_pred EEEecCCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCc
Confidence 4455667788999999999999999999998886543
No 430
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=20.19 E-value=1.1e+02 Score=23.99 Aligned_cols=22 Identities=23% Similarity=0.291 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHhCCCcEEEEEe
Q psy14941 42 IIFDTILVELYQRGHDLTVITQ 63 (513)
Q Consensus 42 ~~~~~la~~L~~rGH~Vt~~~~ 63 (513)
.|...++++|.++|.+|.+.=|
T Consensus 17 Sp~~~l~~~L~~~g~~V~~~DP 38 (106)
T PF03720_consen 17 SPALELIEELKERGAEVSVYDP 38 (106)
T ss_dssp -HHHHHHHHHHHTT-EEEEE-T
T ss_pred CHHHHHHHHHHHCCCEEEEECC
Confidence 6999999999999999877655
No 431
>TIGR01755 flav_wrbA NAD(P)H:quinone oxidoreductase, type IV. This model represents a protein, WrbA, related to and slightly larger than flavodoxin. It was just shown, in E. coli and Archaeoglobus fulgidus (and previously for some eukaryotic homologs) to act as fourth type of NAD(P)H:quinone oxidoreductase. In E. coli, this protein was earlier reported to be produced during stationary phase, bind to the trp repressor, and make trp operon repression more efficient. WrbA does not interact with the trp operator by itself. Members are found in species in which homologs of the E. coli trp operon repressor TrpR are not detected.
Probab=20.12 E-value=1.9e+02 Score=25.84 Aligned_cols=35 Identities=14% Similarity=0.203 Sum_probs=25.1
Q ss_pred eEeEEcCCCCCChHHHHH-HHHHHHHhC-CCcEEEEEe
Q psy14941 28 KILAIFPTPAKSHQIIFD-TILVELYQR-GHDLTVITQ 63 (513)
Q Consensus 28 kIL~~~p~~~~gH~~~~~-~la~~L~~r-GH~Vt~~~~ 63 (513)
|||+++-+. +||..-+. .+++.+.+. |++|+++..
T Consensus 2 kilIiY~S~-~G~T~~lA~~ia~g~~~~~g~ev~~~~v 38 (197)
T TIGR01755 2 KVLVLYYSM-YGHIETMARAVAEGAREVDGAEVVVKRV 38 (197)
T ss_pred eEEEEEeCC-CCHHHHHHHHHHHHHHhcCCCEEEEEec
Confidence 788777665 78888754 455567665 999987764
No 432
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=20.06 E-value=2.9e+02 Score=20.39 Aligned_cols=29 Identities=10% Similarity=0.085 Sum_probs=22.1
Q ss_pred ChHHHHHHHHHHHHhCCCcEEEEEeecCC
Q psy14941 39 SHQIIFDTILVELYQRGHDLTVITQYPET 67 (513)
Q Consensus 39 gH~~~~~~la~~L~~rGH~Vt~~~~~~~~ 67 (513)
-+.-.+.+++..+.+||+++.=++..+.+
T Consensus 11 n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te 39 (76)
T PRK06737 11 NDPSVLLRISGIFARRGYYISSLNLNERD 39 (76)
T ss_pred cCCCHHHHHHHHHhccCcceEEEEecccC
Confidence 34446788999999999999987765543
No 433
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=20.05 E-value=2.4e+02 Score=24.19 Aligned_cols=37 Identities=5% Similarity=0.114 Sum_probs=32.0
Q ss_pred eEEcCCCCCChHHHHHHHHHHHHhCCCcEEEEEeecC
Q psy14941 30 LAIFPTPAKSHQIIFDTILVELYQRGHDLTVITQYPE 66 (513)
Q Consensus 30 L~~~p~~~~gH~~~~~~la~~L~~rGH~Vt~~~~~~~ 66 (513)
.++...+|.|=......++..|+++|.+|.++..+..
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~ 39 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTY 39 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCC
Confidence 3477888899999999999999999999999987654
No 434
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=20.03 E-value=1.8e+02 Score=27.38 Aligned_cols=40 Identities=15% Similarity=0.245 Sum_probs=32.6
Q ss_pred eEeEEcCCCCCChHHHHHHHHHHHHhCCCcEEEEEeecCC
Q psy14941 28 KILAIFPTPAKSHQIIFDTILVELYQRGHDLTVITQYPET 67 (513)
Q Consensus 28 kIL~~~p~~~~gH~~~~~~la~~L~~rGH~Vt~~~~~~~~ 67 (513)
|++.++.-+|-|=..-...||-+|+++|++|.++-.++..
T Consensus 2 ~~iav~~KGGVGKTT~~~nLA~~La~~G~rVLlID~Dpq~ 41 (274)
T PRK13235 2 RKVAIYGKGGIGKSTTTQNTVAGLAEMGKKVMVVGCDPKA 41 (274)
T ss_pred CEEEEeCCCCccHHHHHHHHHHHHHHCCCcEEEEecCCcc
Confidence 4444667778899999999999999999999988766543
Done!