RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14941
(513 letters)
>gnl|CDD|223071 PHA03392, egt, ecdysteroid UDP-glucosyltransferase; Provisional.
Length = 507
Score = 258 bits (662), Expect = 3e-80
Identities = 154/521 (29%), Positives = 256/521 (49%), Gaps = 56/521 (10%)
Query: 11 LISAAILLMCIRIQQCSKILAIFPTPAKSHQIIFDTILVELYQRGHDLTVITQYPETLVH 70
+I +LL+ + + ++ILA+FPTPA SH +F + L +RGH++TVI P V+
Sbjct: 5 IIILLLLLLLLSGVRAARILAVFPTPAYSHHSVFKVYVEALAERGHNVTVIK--PTLRVY 62
Query: 71 Y-----ERMKVLDIKGTHTY------NSTIEDIYELSADSIKRIHIN-------FIDQEI 112
Y + +D + Y +S + + ADS N DQ
Sbjct: 63 YASHLCGNITEIDASLSVEYFKKLVKSSAVFRKRGVVADSSTVTADNYMGLVRMISDQ-- 120
Query: 113 QVENIFLHENMKS-IWNMENKYDLIITEMFLTDAFLVIPYLY-KVPYISIASSTLHPQHS 170
F N+K+ I N NK+DL++TE FL D LV +L+ P I I+S ++
Sbjct: 121 -----FDLPNVKNLIANKNNKFDLLVTEAFL-DYPLVFSHLFGDAPVIQISSGYGLAENF 174
Query: 171 ERLGLPD-NPSYIP---------SYVSAYTDHMSFTERLSNTFVGLYYKWYYDYKSHGAA 220
E +G +P Y P V + + RL N F L
Sbjct: 175 ETMGAVSRHPVYYPNLWRSKFGNLNVWETINEIYTELRLYNEFSLL----------ADEQ 224
Query: 221 NRIIHKYF-PEIPRIQDLLNTCSLTLVNTHHTINIARPLPANVVEIGGIH--VKPAKKLN 277
N+++ + F P+ P I++L N L VN H + RP+P +V +GG+H KP + L+
Sbjct: 225 NKLLKQQFGPDTPTIRELRNRVQLLFVNVHPVFDNNRPVPPSVQYLGGLHLHKKPPQPLD 284
Query: 278 EEMERFLNESHNGVIYFSMGSMLKTSSFPPDKFKAFLKAFSKIPQRVLWKFEDNDTSIFK 337
+ +E FLN S NGV+Y S GS + T+ + + L+ F K+P VLWK++ +I
Sbjct: 285 DYLEEFLNNSTNGVVYVSFGSSIDTNDMDNEFLQMLLRTFKKLPYNVLWKYDGEVEAINL 344
Query: 338 PYKNIRTSSWMPQRDIFAHPNMKLFISHGGLLGITEAVYEGIPVLGIPVFGDQWANIKKL 397
P N+ T W PQR + H N+K F++ GG+ EA+ +P++G+P+ GDQ+ N K
Sbjct: 345 P-ANVLTQKWFPQRAVLKHKNVKAFVTQGGVQSTDEAIDALVPMVGLPMMGDQFYNTNKY 403
Query: 398 ESLKAGKLLPYLEITEETVSDA-LKIVLSPEYKENAEDLGTRFRDRPQSPLEVAIYWIEY 456
L G+ L + ++ + A + ++ +P+Y++N ++L R +P +PL AI++ E+
Sbjct: 404 VELGIGRALDTVTVSAAQLVLAIVDVIENPKYRKNLKELRHLIRHQPMTPLHKAIWYTEH 463
Query: 457 VIKYNG-AYHLQSAAVKLTWYQYYLLDIALVLIVGLVSVCF 496
VI+ L++ A +++ Y++ I + L+ V
Sbjct: 464 VIRNKHGNTSLKTKAANVSYSDYFMSYILVPLVTFTVMNHL 504
>gnl|CDD|201077 pfam00201, UDPGT, UDP-glucoronosyl and UDP-glucosyl transferase.
Length = 500
Score = 244 bits (624), Expect = 1e-74
Identities = 156/496 (31%), Positives = 252/496 (50%), Gaps = 42/496 (8%)
Query: 28 KILAIFPTPAKSHQIIFDTILVELYQRGHDLTVITQYPETLVHYERMKVLDIKGTHTYNS 87
K+L ++P SH + IL+EL QRGH++TV+ P + ++K TY
Sbjct: 2 KVL-VWPM-DGSHWMNMKGILLELVQRGHEVTVLR--PSASILIGPALPSNLKFE-TY-P 55
Query: 88 TIEDIYELSADSIKRIHINFIDQE-----------IQVENIFLHENMKS-IWNM------ 129
T EL KR+ F++ +Q + + K + N
Sbjct: 56 TSYTKEELENLFPKRVMNWFMEAAEAGTVWSYFSALQEYSDGARVSCKELVGNKFLMTKL 115
Query: 130 -ENKYDLIITEMFLTDAFLVIPYLYKVPYI----SIASSTLHPQHSERLGLPDNPSYIPS 184
E+ +D+++ + L+ L +P + + + GLP PSY+P
Sbjct: 116 QESSFDVVLADPVWPCGALLAELL-HIPTVYSLRFVPGYAAE-KADG--GLPAPPSYVPV 171
Query: 185 YVSAYTDHMSFTERLSNTFVGLYYK-WYYDYKSHGAANRIIHKYFPEIPRIQDLLNTCSL 243
+S +D M+F ER+ N + LY+ W+ + P + +L++ S
Sbjct: 172 RLSDLSDGMTFGERVKNMLIMLYFDFWFQRFPKKWDQFASELLGRPVT--LPELMSKASA 229
Query: 244 TLVNTHHTINIARPLPANVVEIGGIHVKPAKKLNEEMERFLNES-HNGVIYFSMGSMLKT 302
L+ + + RPL N+ IGG++ KPAK L +EME F+ S +GV+ FS+GSM+
Sbjct: 230 WLLRNYWDLEFPRPLLPNMEFIGGLNCKPAKPLPQEMEAFVQSSGEHGVVVFSLGSMV-- 287
Query: 303 SSFPPDKFKAFLKAFSKIPQRVLWKFEDNDTSIFKPYKNIRTSSWMPQRDIFAHPNMKLF 362
S+ P +K A ++IPQ+VLW+F+ S N R W+PQ D+ HP + F
Sbjct: 288 SNIPEEKANEIASALAQIPQKVLWRFDGTKPSTLGR--NTRLVKWLPQNDLLGHPKTRAF 345
Query: 363 ISHGGLLGITEAVYEGIPVLGIPVFGDQWANIKKLESLKAGKLLPYLEITEETVSDALKI 422
++H G G+ EA+ G+P++G+P+FGDQ N K +E+ A L L +T E + +ALK
Sbjct: 346 VTHAGSNGVYEAICHGVPMVGMPLFGDQMDNAKHMEAKGAAVTLNVLTMTSEDLLNALKT 405
Query: 423 VLS-PEYKENAEDLGTRFRDRPQSPLEVAIYWIEYVIKYNGAYHLQSAAVKLTWYQYYLL 481
V++ P YKEN L + D+P PL+ A++WIE+V+++ GA HL+ AA LTWYQY+ L
Sbjct: 406 VINDPSYKENIMRLSSIHHDQPVKPLDRAVFWIEFVMRHKGAKHLRPAAHDLTWYQYHSL 465
Query: 482 DIALVLIVGLVSVCFV 497
D+ L+ + +V F+
Sbjct: 466 DVIGFLLACVATVAFI 481
>gnl|CDD|224732 COG1819, COG1819, Glycosyl transferases, related to
UDP-glucuronosyltransferase [Carbohydrate transport and
metabolism / Signal transduction mechanisms].
Length = 406
Score = 103 bits (259), Expect = 6e-24
Identities = 81/420 (19%), Positives = 144/420 (34%), Gaps = 56/420 (13%)
Query: 28 KILAIFPTPAKSHQIIFDTILVELYQRGHDLTVITQYPETLVHYERMKVLDIKGTHTYNS 87
KIL A H + EL +RGH++ + + E +
Sbjct: 3 KIL-FVVCGAYGHVNPCLALGKELRRRGHEVVFAS-TGKFKEFVEAA---GLAFVAYPIR 57
Query: 88 TIEDIYELSADSIKRIHINFIDQEIQVENIFLHENMKSIWNMENKYDLIITEMFLTDAFL 147
E E + + + Q+ + L E ++ + DL++ + L+
Sbjct: 58 DSELATEDGKFAGVKSFRRLL-QQFKKLIRELLELLRELEP-----DLVVDDARLSLGLA 111
Query: 148 VIPYLYKVPYISI--ASSTLHPQHSERLGLPDNPSYIPSYVSAYTDHMSFTERLSNTFVG 205
L +P + I A T P L +P + + +
Sbjct: 112 AR--LLGIPVVGINVAPYTPLPAAGLPLPPVGIAGKLPIPLYPLPPRLVRPLIFA----- 164
Query: 206 LYYKWYYDYKSHGAANRIIHKYFPEIPRIQDLLNTCSLTLVNTHHTINIA---------R 256
R +P I L + + IA
Sbjct: 165 -------RSWLPKLVVRRNLGLELGLPNI--------RRLFASGPLLEIAYTDVLFPPGD 209
Query: 257 PLPANVVEIGGIHVKPAKKLNEEMERFLNESHNGVIYFSMGSMLKTSSFPPDKFKAFLKA 316
LP IG + + A NE + ++Y S+G++ L+A
Sbjct: 210 RLPFIGPYIGPLLGEAA---NELPYWIPADR--PIVYVSLGTVGNAVEL----LAIVLEA 260
Query: 317 FSKIPQRVLWKFEDNDTSIFKPYKNIRTSSWMPQRDIFAHPNMKLFISHGGLLGITEAVY 376
+ + RV+ ++ N+ + ++PQ ++ + I HGG +EA+Y
Sbjct: 261 LADLDVRVIVSLGGARDTLVNVPDNVIVADYVPQLELLPRAD--AVIHHGGAGTTSEALY 318
Query: 377 EGIPVLGIPVFGDQWANIKKLESLKAGKLLPYLEITEETVSDALKIVLS-PEYKENAEDL 435
G+P++ IP DQ N +++E L AG LP+ E+TEE + A+ VL+ Y+ AE L
Sbjct: 319 AGVPLVVIPDGADQPLNAERVEELGAGIALPFEELTEERLRAAVNEVLADDSYRRAAERL 378
>gnl|CDD|99960 cd03784, GT1_Gtf_like, This family includes the Gtfs, a group of
homologous glycosyltransferases involved in the final
stages of the biosynthesis of antibiotics vancomycin and
related chloroeremomycin. Gtfs transfer sugar moieties
from an activated NDP-sugar donor to the oxidatively
cross-linked heptapeptide core of vancomycin group
antibiotics. The core structure is important for the
bioactivity of the antibiotics.
Length = 401
Score = 91.7 bits (228), Expect = 5e-20
Identities = 59/312 (18%), Positives = 98/312 (31%), Gaps = 32/312 (10%)
Query: 132 KYDLIITEMFLTDAFLVIPYLYKVPYISIASSTLHPQHSERLGLPDNPSYIPSYVSAYTD 191
DL++ + + L +P + + P S P +
Sbjct: 104 GPDLVVADPLAFAGAVAAEAL-GIPAVRLLLGPDTP-----------TSAFPPPLGRAN- 150
Query: 192 HMSFTERLSNTFVGLYYKWYYD-YKSHGAANRIIHKYFPEIPRIQDLLNTCSLTLVNTHH 250
+ + + L W + G + +P +
Sbjct: 151 LRLYALLEAELWQDLLGAWLRARRRRLGLPPLSLLDGSD-VPEL--------YGFSPAVL 201
Query: 251 TINIARPLPANVVEIGGIHVKPAKKLNEEMERFLNESHNGVIYFSMGSMLKTSSFPPDKF 310
P V G V E+ FL + +Y GSM P
Sbjct: 202 PPPPDWPRFDLVTGYGFRDVPYNGPPPPELWLFL-AAGRPPVYVGFGSM--VVRDPEALA 258
Query: 311 KAFLKAFSKIPQRVLWKFEDNDTSIFKPYKNIRTSSWMPQRDIFAHPNMKLFISHGGLLG 370
+ ++A + + QR + N+R ++P + P + HGG
Sbjct: 259 RLDVEAVATLGQRAILSLGWGGLGAEDLPDNVRVVDFVPHDWLL--PRCAAVVHHGGAGT 316
Query: 371 ITEAVYEGIPVLGIPVFGDQ--WANIKKLESLKAGKLLPYLEITEETVSDALKIVLSPEY 428
A+ G+P L +P FGDQ WA + L AG L E+T E ++ AL+ +L P
Sbjct: 317 TAAALRAGVPQLVVPFFGDQPFWAAR--VAELGAGPALDPRELTAERLAAALRRLLDPPS 374
Query: 429 KENAEDLGTRFR 440
+ A L R R
Sbjct: 375 RRRAAALLRRIR 386
>gnl|CDD|233407 TIGR01426, MGT, glycosyltransferase, MGT family. This model
describes the MGT (macroside glycosyltransferase)
subfamily of the UDP-glucuronosyltransferase family.
Members include a number of glucosyl transferases for
macrolide antibiotic inactivation, but also include
transferases of glucose-related sugars for macrolide
antibiotic production [Cellular processes, Toxin
production and resistance].
Length = 392
Score = 77.0 bits (190), Expect = 3e-15
Identities = 40/153 (26%), Positives = 72/153 (47%), Gaps = 8/153 (5%)
Query: 291 VIYFSMGSMLKTSSFPPDKFKAFLKAFSKIPQRVLWKFEDN-DTSIFKPY-KNIRTSSWM 348
V+ S+G++ P ++ ++AF + V+ D + N+ W+
Sbjct: 227 VVLISLGTVFNNQ---PSFYRTCVEAFRDLDWHVVLSVGRGVDPADLGELPPNVEVRQWV 283
Query: 349 PQRDIFAHPNMKLFISHGGLLGITEAVYEGIPVLGIPVFGDQWANIKKLESLKAGKLLPY 408
PQ +I + FI+HGG+ EA++ G+P++ +P DQ +++ L G+ LP
Sbjct: 284 PQLEILKKAD--AFITHGGMNSTMEALFNGVPMVAVPQGADQPMTARRIAELGLGRHLPP 341
Query: 409 LEITEETVSDALKIVLS-PEYKENAEDLGTRFR 440
E+T E + +A+ VLS P Y E + R
Sbjct: 342 EEVTAEKLREAVLAVLSDPRYAERLRKMRAEIR 374
>gnl|CDD|215112 PLN02167, PLN02167, UDP-glycosyltransferase family protein.
Length = 475
Score = 52.1 bits (125), Expect = 4e-07
Identities = 32/129 (24%), Positives = 58/129 (44%), Gaps = 16/129 (12%)
Query: 278 EEMERFLNES-HNGVIYFSMGSMLKTSSFPPDKFKAFLKAFSKIPQRVLWKFEDNDTSIF 336
+ + R+L++ + V++ GS+ S P + K +A + R LW N
Sbjct: 268 DRIMRWLDDQPESSVVFLCFGSL---GSLPAPQIKEIAQALELVGCRFLWSIRTNPAEYA 324
Query: 337 KPYKNI------RTS------SWMPQRDIFAHPNMKLFISHGGLLGITEAVYEGIPVLGI 384
PY+ + R W PQ +I AH + F+SH G + E+++ G+P+
Sbjct: 325 SPYEPLPEGFMDRVMGRGLVCGWAPQVEILAHKAIGGFVSHCGWNSVLESLWFGVPIATW 384
Query: 385 PVFGDQWAN 393
P++ +Q N
Sbjct: 385 PMYAEQQLN 393
>gnl|CDD|215084 PLN00164, PLN00164, glucosyltransferase; Provisional.
Length = 480
Score = 50.4 bits (121), Expect = 1e-06
Identities = 15/48 (31%), Positives = 30/48 (62%)
Query: 346 SWMPQRDIFAHPNMKLFISHGGLLGITEAVYEGIPVLGIPVFGDQWAN 393
+W PQ++I AH + F++H G + E+++ G+P+ P++ +Q N
Sbjct: 345 TWAPQKEILAHAAVGGFVTHCGWNSVLESLWHGVPMAPWPLYAEQHLN 392
>gnl|CDD|178589 PLN03015, PLN03015, UDP-glucosyl transferase.
Length = 470
Score = 49.7 bits (118), Expect = 2e-06
Identities = 23/94 (24%), Positives = 51/94 (54%), Gaps = 5/94 (5%)
Query: 345 SSWMPQRDIFAHPNMKLFISHGGLLGITEAVYEGIPVLGIPVFGDQWANIKKLE-----S 399
+ W PQ +I +H ++ F+SH G + E++ +G+P++ P++ +QW N L +
Sbjct: 340 TQWAPQVEILSHRSIGGFLSHCGWSSVLESLTKGVPIVAWPLYAEQWMNATLLTEEIGVA 399
Query: 400 LKAGKLLPYLEITEETVSDALKIVLSPEYKENAE 433
++ +L I E V+ ++ +++ E +E +
Sbjct: 400 VRTSELPSEKVIGREEVASLVRKIVAEEDEEGQK 433
>gnl|CDD|178170 PLN02555, PLN02555, limonoid glucosyltransferase.
Length = 480
Score = 47.9 bits (114), Expect = 9e-06
Identities = 30/97 (30%), Positives = 47/97 (48%), Gaps = 12/97 (12%)
Query: 347 WMPQRDIFAHPNMKLFISHGGLLGITEAVYEGIPVLGIPVFGDQWANIKKL-ESLKAG-- 403
W PQ + AHP++ F++H G EA+ G+PV+ P +GDQ + L + K G
Sbjct: 344 WCPQEKVLAHPSVACFVTHCGWNSTMEALSSGVPVVCFPQWGDQVTDAVYLVDVFKTGVR 403
Query: 404 --------KLLPYLEITEETVSDALKIVLSPEYKENA 432
KL+ E+ E + +A + E K+NA
Sbjct: 404 LCRGEAENKLITREEV-AECLLEATVGEKAAELKQNA 439
>gnl|CDD|215127 PLN02210, PLN02210, UDP-glucosyl transferase.
Length = 456
Score = 47.7 bits (113), Expect = 1e-05
Identities = 31/119 (26%), Positives = 52/119 (43%), Gaps = 12/119 (10%)
Query: 280 MERFLNESHNGVIYFSMGSMLKTSSFPPDKFKAFLKAFSKIPQRVLW------KFEDNDT 333
ME ++ + V+Y S GSML++ ++ + KA LW K ++
Sbjct: 260 MEWLDKQARSSVVYISFGSMLESLE---NQVETIAKALKNRGVPFLWVIRPKEKAQNVQV 316
Query: 334 --SIFKPYKNIRTSSWMPQRDIFAHPNMKLFISHGGLLGITEAVYEGIPVLGIPVFGDQ 390
+ K + + W PQ I +H + F++H G E V G+PV+ P + DQ
Sbjct: 317 LQEMVKEGQGVVLE-WSPQEKILSHMAISCFVTHCGWNSTIETVVAGVPVVAYPSWTDQ 374
>gnl|CDD|215247 PLN02448, PLN02448, UDP-glycosyltransferase family protein.
Length = 459
Score = 46.5 bits (111), Expect = 2e-05
Identities = 35/110 (31%), Positives = 49/110 (44%), Gaps = 6/110 (5%)
Query: 289 NGVIYFSMGSMLKTSSFPPDKFKAFLKAFSKIPQRVLWKFEDNDTSIFKPY--KNIRTSS 346
V+Y S+GS L SS D+ A L+ S + R LW + S K
Sbjct: 274 GSVLYVSLGSFLSVSSAQMDEIAAGLRD-SGV--RFLWVARG-EASRLKEICGDMGLVVP 329
Query: 347 WMPQRDIFAHPNMKLFISHGGLLGITEAVYEGIPVLGIPVFGDQWANIKK 396
W Q + H ++ F +H G EAV+ G+P+L P+F DQ N K
Sbjct: 330 WCDQLKVLCHSSVGGFWTHCGWNSTLEAVFAGVPMLTFPLFWDQPLNSKL 379
>gnl|CDD|178032 PLN02410, PLN02410, UDP-glucoronosyl/UDP-glucosyl transferase
family protein.
Length = 451
Score = 46.2 bits (109), Expect = 3e-05
Identities = 44/183 (24%), Positives = 74/183 (40%), Gaps = 27/183 (14%)
Query: 240 TCSLTLVNTHHTIN------IARPLPANVVEIGGIHV---KPAKKLNEE---MERFLNES 287
T S ++NT + + + L V IG +H+ P L E +E +
Sbjct: 203 TASSVIINTASCLESSSLSRLQQQLQIPVYPIGPLHLVASAPTSLLEENKSCIEWLNKQK 262
Query: 288 HNGVIYFSMGSMLKTSSFPPDKFKAFLKAFSKIPQRVLWKFEDNDT-------SIFKPYK 340
N VI+ S+GS+ + ++ Q+ LW S+ K +
Sbjct: 263 KNSVIFVSLGSL---ALMEINEVMETASGLDSSNQQFLWVIRPGSVRGSEWIESLPKEFS 319
Query: 341 NIRTS-----SWMPQRDIFAHPNMKLFISHGGLLGITEAVYEGIPVLGIPVFGDQWANIK 395
I + W PQ+++ +HP + F SH G E++ EG+P++ P DQ N +
Sbjct: 320 KIISGRGYIVKWAPQKEVLSHPAVGGFWSHCGWNSTLESIGEGVPMICKPFSSDQKVNAR 379
Query: 396 KLE 398
LE
Sbjct: 380 YLE 382
>gnl|CDD|223779 COG0707, MurG, UDP-N-acetylglucosamine:LPS N-acetylglucosamine
transferase [Cell envelope biogenesis, outer membrane].
Length = 357
Score = 45.0 bits (107), Expect = 6e-05
Identities = 27/87 (31%), Positives = 40/87 (45%), Gaps = 9/87 (10%)
Query: 361 LFISHGGLLGITEAVYEGIPVLGIP----VFGDQWANIKKLESLKAGKLLPYLEITEETV 416
L IS G L I E + G+P + +P G Q N K LE A ++ E+T E +
Sbjct: 255 LVISRAGALTIAELLALGVPAILVPYPPGADGHQEYNAKFLEKAGAALVIRQSELTPEKL 314
Query: 417 SDALKIVLSP-----EYKENAEDLGTR 438
++ + +LS ENA+ LG
Sbjct: 315 AELILRLLSNPEKLKAMAENAKKLGKP 341
>gnl|CDD|178572 PLN02992, PLN02992, coniferyl-alcohol glucosyltransferase.
Length = 481
Score = 44.6 bits (105), Expect = 9e-05
Identities = 18/49 (36%), Positives = 28/49 (57%)
Query: 345 SSWMPQRDIFAHPNMKLFISHGGLLGITEAVYEGIPVLGIPVFGDQWAN 393
SW PQ +I AH + F++H G E+V G+P++ P+F +Q N
Sbjct: 343 PSWAPQAEILAHQAVGGFLTHCGWSSTLESVVGGVPMIAWPLFAEQNMN 391
>gnl|CDD|177813 PLN02152, PLN02152, indole-3-acetate beta-glucosyltransferase.
Length = 455
Score = 43.9 bits (103), Expect = 1e-04
Identities = 34/138 (24%), Positives = 60/138 (43%), Gaps = 22/138 (15%)
Query: 285 NESHNGVIYFSMGSMLKTSSFPPDKFKAFLKAFSKIPQRVLW----------KFEDNDTS 334
+++ + VIY S G+M++ S + + +A + + LW K E + +
Sbjct: 257 SKTESSVIYVSFGTMVELSK---KQIEELARALIEGKRPFLWVITDKLNREAKIEGEEET 313
Query: 335 IFKPYKNIRTS--------SWMPQRDIFAHPNMKLFISHGGLLGITEAVYEGIPVLGIPV 386
+ R SW Q ++ H + F++H G E++ G+PV+ P+
Sbjct: 314 EIEKIAGFRHELEEVGMIVSWCSQIEVLRHRAVGCFVTHCGWSSSLESLVLGVPVVAFPM 373
Query: 387 FGDQWANIKKLE-SLKAG 403
+ DQ AN K LE K G
Sbjct: 374 WSDQPANAKLLEEIWKTG 391
>gnl|CDD|178581 PLN03004, PLN03004, UDP-glycosyltransferase.
Length = 451
Score = 43.1 bits (101), Expect = 2e-04
Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 9/88 (10%)
Query: 306 PPDKFKAFLKAFSKIPQRVLWKFEDNDTSIFKPYKNIRTSSWMPQRDIFAHPNMKLFISH 365
PP+ K L S +P+ L + ED K + SW PQ + H + F++H
Sbjct: 309 PPELEKTELDLKSLLPEGFLSRTED---------KGMVVKSWAPQVPVLNHKAVGGFVTH 359
Query: 366 GGLLGITEAVYEGIPVLGIPVFGDQWAN 393
G I EAV G+P++ P++ +Q N
Sbjct: 360 CGWNSILEAVCAGVPMVAWPLYAEQRFN 387
>gnl|CDD|177857 PLN02207, PLN02207, UDP-glycosyltransferase.
Length = 468
Score = 42.7 bits (100), Expect = 4e-04
Identities = 19/56 (33%), Positives = 34/56 (60%), Gaps = 4/56 (7%)
Query: 347 WMPQRDIFAHPNMKLFISHGGLLGITEAVYEGIPVLGIPVFGDQWAN----IKKLE 398
W PQ +I AH + F+SH G I E+++ G+P++ P++ +Q N +K+L+
Sbjct: 339 WSPQVEILAHKAVGGFVSHCGWNSIVESLWFGVPIVTWPMYAEQQLNAFLMVKELK 394
>gnl|CDD|215304 PLN02554, PLN02554, UDP-glycosyltransferase family protein.
Length = 481
Score = 42.5 bits (100), Expect = 4e-04
Identities = 33/136 (24%), Positives = 57/136 (41%), Gaps = 24/136 (17%)
Query: 279 EMERFLNES-HNGVIYFSMGSMLKTSSFPPDKFKAFLKAFSKIPQRVLWKFEDNDTSIFK 337
E+ R+L+E V++ GSM F ++ + A + R LW +I K
Sbjct: 263 EILRWLDEQPPKSVVFLCFGSM---GGFSEEQAREIAIALERSGHRFLWSLRRASPNIMK 319
Query: 338 P----YKNI----------RTS------SWMPQRDIFAHPNMKLFISHGGLLGITEAVYE 377
+ N+ RT W PQ + A P + F++H G I E+++
Sbjct: 320 EPPGEFTNLEEILPEGFLDRTKDIGKVIGWAPQVAVLAKPAIGGFVTHCGWNSILESLWF 379
Query: 378 GIPVLGIPVFGDQWAN 393
G+P+ P++ +Q N
Sbjct: 380 GVPMAAWPLYAEQKFN 395
>gnl|CDD|215465 PLN02863, PLN02863, UDP-glucoronosyl/UDP-glucosyl transferase
family protein.
Length = 477
Score = 42.2 bits (99), Expect = 6e-04
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 347 WMPQRDIFAHPNMKLFISHGGLLGITEAVYEGIPVLGIPVFGDQWANIKKL-ESLKAGK 404
W PQ I +H + F++H G + E + G+P+L P+ DQ+ N L + LK
Sbjct: 350 WAPQVAILSHRAVGAFLTHCGWNSVLEGLVAGVPMLAWPMAADQFVNASLLVDELKVAV 408
>gnl|CDD|215293 PLN02534, PLN02534, UDP-glycosyltransferase.
Length = 491
Score = 41.8 bits (98), Expect = 7e-04
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 347 WMPQRDIFAHPNMKLFISHGGLLGITEAVYEGIPVLGIPVFGDQWANIKKL-ESLKAG 403
W PQ I +HP + F++H G E + G+P++ P+F +Q+ N K + E L+ G
Sbjct: 351 WAPQVLILSHPAIGGFLTHCGWNSTIEGICSGVPMITWPLFAEQFLNEKLIVEVLRIG 408
>gnl|CDD|217893 pfam04101, Glyco_tran_28_C, Glycosyltransferase family 28
C-terminal domain. The glycosyltransferase family 28
includes monogalactosyldiacylglycerol synthase (EC
2.4.1.46) and UDP-N-acetylglucosamine transferase (EC
2.4.1.-). Structural analysis suggests the C-terminal
domain contains the UDP-GlcNAc binding site.
Length = 167
Score = 39.6 bits (93), Expect = 0.001
Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 7/88 (7%)
Query: 361 LFISHGGLLGITEAVYEGIPVLGIP----VFGDQWANIKKLESLKAGKLLPYLEITEETV 416
L IS G I E + G P + +P Q N +L A +L E+T E +
Sbjct: 75 LVISRAGAGTIAELLALGKPAILVPRPKAAGEHQDNNALELVKAGAALVLLQKELTPEKL 134
Query: 417 SDAL-KIVLSPE--YKENAEDLGTRFRD 441
+AL K++L P Y+ N G+R +D
Sbjct: 135 VEALLKLLLKPLRLYEMNKAAKGSRLKD 162
>gnl|CDD|215305 PLN02562, PLN02562, UDP-glycosyltransferase.
Length = 448
Score = 41.0 bits (96), Expect = 0.001
Identities = 28/113 (24%), Positives = 42/113 (37%), Gaps = 8/113 (7%)
Query: 289 NGVIYFSMGSMLKTSSFPPDKFKAFLKAFSKIPQRVLWKFEDNDTSIFKP------YKNI 342
N VIY S GS + S + A + +W P K
Sbjct: 273 NSVIYISFGSWV--SPIGESNVRTLALALEASGRPFIWVLNPVWREGLPPGYVERVSKQG 330
Query: 343 RTSSWMPQRDIFAHPNMKLFISHGGLLGITEAVYEGIPVLGIPVFGDQWANIK 395
+ SW PQ ++ H + +++H G EA+ +L PV GDQ+ N
Sbjct: 331 KVVSWAPQLEVLKHQAVGCYLTHCGWNSTMEAIQCQKRLLCYPVAGDQFVNCA 383
>gnl|CDD|177830 PLN02173, PLN02173, UDP-glucosyl transferase family protein.
Length = 449
Score = 40.8 bits (95), Expect = 0.001
Identities = 30/125 (24%), Positives = 56/125 (44%), Gaps = 21/125 (16%)
Query: 291 VIYFSMGSMLKTSSFPPDKFKAFLKAFS-----------KIPQRVLWKFEDNDTSIFKPY 339
V+Y + GSM K SS ++ + + FS K+P L + + + + K
Sbjct: 266 VVYIAFGSMAKLSSEQMEEIASAISNFSYLWVVRASEESKLPPGFLETVDKDKSLVLK-- 323
Query: 340 KNIRTSSWMPQRDIFAHPNMKLFISHGGLLGITEAVYEGIPVLGIPVFGDQWANIKKLES 399
W PQ + ++ + F++H G E + G+P++ +P + DQ N K ++
Sbjct: 324 -------WSPQLQVLSNKAIGCFMTHCGWNSTMEGLSLGVPMVAMPQWTDQPMNAKYIQD 376
Query: 400 L-KAG 403
+ K G
Sbjct: 377 VWKVG 381
>gnl|CDD|233077 TIGR00661, MJ1255, conserved hypothetical protein. This model
represents nearly the full length of MJ1255 from
Methanococcus jannaschii and of an unpublished protein
from Vibrio cholerae, as well as the C-terminal half of
a protein from Methanobacterium thermoautotrophicum. A
small region (~50 amino acids) within the domain appears
related to a family of sugar transferases [Hypothetical
proteins, Conserved].
Length = 321
Score = 40.2 bits (94), Expect = 0.001
Identities = 24/55 (43%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 358 NMKLFISHGGLLGITEAVYEGIPVLGIPVFG--DQWANIKKLESLKAGKLLPYLE 410
N +L I+HGG I+EA+ G P++ IP G +Q N KLE L G L Y E
Sbjct: 247 NAELVITHGGFSLISEALSLGKPLIVIPDLGQFEQGNNAVKLEDLGCGIALEYKE 301
>gnl|CDD|233284 TIGR01133, murG, undecaprenyldiphospho-muramoylpentapeptide
beta-N-acetylglucosaminyltransferase. RM 8449890 RT The
final step of peptidoglycan subunit assembly in
Escherichia coli occurs in the cytoplasm. RA Bupp K, van
Heijenoort J. RL J Bacteriol 1993 Mar;175(6):1841-3
[Cell envelope, Biosynthesis and degradation of murein
sacculus and peptidoglycan].
Length = 348
Score = 38.0 bits (89), Expect = 0.010
Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 8/84 (9%)
Query: 361 LFISHGGLLGITEAVYEGIPVLGIP---VFGDQWANIKKLESLKAGKLLPYLEIT-EETV 416
L IS G + E G+P + IP DQ+ N K LE L AG ++ E+ E+ +
Sbjct: 253 LVISRAGASTVAELAAAGVPAILIPYPYAADDQYYNAKFLEDLGAGLVIRQKELLPEKLL 312
Query: 417 SDALKIVLSPE----YKENAEDLG 436
LK++L P E A L
Sbjct: 313 EALLKLLLDPANLEAMAEAARKLA 336
>gnl|CDD|178584 PLN03007, PLN03007, UDP-glucosyltransferase family protein.
Length = 482
Score = 37.1 bits (86), Expect = 0.018
Identities = 41/163 (25%), Positives = 64/163 (39%), Gaps = 24/163 (14%)
Query: 289 NGVIYFSMGSMLKTSSFPPDKFKAFLKAFSKIPQRVLWKFEDNDTSIFKPY--------- 339
+ VIY S GS+ +SF ++ Q +W N+ K
Sbjct: 285 DSVIYLSFGSV---ASFKNEQLFEIAAGLEGSGQNFIWVVRKNENQGEKEEWLPEGFEER 341
Query: 340 ---KNIRTSSWMPQRDIFAHPNMKLFISHGGLLGITEAVYEGIPVLGIPVFGDQWANIKK 396
K + W PQ I H F++H G + E V G+P++ PV +Q+ N K
Sbjct: 342 TKGKGLIIRGWAPQVLILDHQATGGFVTHCGWNSLLEGVAAGLPMVTWPVGAEQFYNEKL 401
Query: 397 LE-------SLKAGKLLPYLE--ITEETVSDALKIVLSPEYKE 430
+ S+ A KL+ I+ E V A++ V+ E E
Sbjct: 402 VTQVLRTGVSVGAKKLVKVKGDFISREKVEKAVREVIVGEEAE 444
>gnl|CDD|178275 PLN02670, PLN02670, transferase, transferring glycosyl groups.
Length = 472
Score = 36.8 bits (85), Expect = 0.026
Identities = 24/99 (24%), Positives = 48/99 (48%), Gaps = 4/99 (4%)
Query: 347 WMPQRDIFAHPNMKLFISHGGLLGITEAVYEGIPVLGIPVFGDQWANIKKLESLKAGKLL 406
W+PQ I +H ++ F++H G + E + G ++ PV +Q N + L K G +
Sbjct: 346 WVPQVKILSHESVGGFLTHCGWNSVVEGLGFGRVLILFPVLNEQGLNTRLLHGKKLGLEV 405
Query: 407 PYLE----ITEETVSDALKIVLSPEYKENAEDLGTRFRD 441
P E T ++V++++++ + + E D R+
Sbjct: 406 PRDERDGSFTSDSVAESVRLAMVDDAGEEIRDKAKEMRN 444
>gnl|CDD|178364 PLN02764, PLN02764, glycosyltransferase family protein.
Length = 453
Score = 36.2 bits (83), Expect = 0.037
Identities = 28/106 (26%), Positives = 52/106 (49%), Gaps = 6/106 (5%)
Query: 347 WMPQRDIFAHPNMKLFISHGGLLGITEAVYEGIPVLGIPVFGDQWANIKKL-ESLKAGKL 405
W+ Q I +HP++ F+SH G + E++ ++ +P GDQ N + L + LK
Sbjct: 324 WVQQPLILSHPSVGCFVSHCGFGSMWESLLSDCQIVLVPQLGDQVLNTRLLSDELKVSVE 383
Query: 406 LPYLE---ITEETVSDALKIVLS--PEYKENAEDLGTRFRDRPQSP 446
+ E ++E++ DA+ V+ E + T++R+ SP
Sbjct: 384 VAREETGWFSKESLRDAINSVMKRDSEIGNLVKKNHTKWRETLASP 429
>gnl|CDD|146802 pfam04354, ZipA_C, ZipA, C-terminal FtsZ-binding domain. This
family represents the ZipA C-terminal domain. ZipA is
involved in septum formation in bacterial cell division.
Its C-terminal domain binds FtsZ, a major component of
the bacterial septal ring. The structure of this domain
is an alpha-beta fold with three alpha helices and a
beta sheet of six antiparallel beta strands. The major
loops protruding from the beta sheet surface are thought
to form a binding site for FtsZ.
Length = 130
Score = 32.9 bits (76), Expect = 0.12
Identities = 9/32 (28%), Positives = 17/32 (53%)
Query: 282 RFLNESHNGVIYFSMGSMLKTSSFPPDKFKAF 313
R + +G + FS+ +M+K +F D + F
Sbjct: 40 RHEDLDGSGPVLFSVANMVKPGTFDLDNMEQF 71
>gnl|CDD|222200 pfam13528, Glyco_trans_1_3, Glycosyl transferase family 1.
Length = 317
Score = 33.8 bits (78), Expect = 0.20
Identities = 24/107 (22%), Positives = 45/107 (42%), Gaps = 10/107 (9%)
Query: 324 VLWKFEDNDTSIFKPYKNIRTSSWMPQRDIFAHPNM-------KLFISHGGLLGITEAVY 376
+L F D + ++ P K + R F+ I + G ++EA+Y
Sbjct: 209 LLKPFPDYEFIVYGPNKEEGREGNLTFRP-FSEEGFLRDLAECSAVICNAGFELLSEALY 267
Query: 377 EGIPVLGIPVFG--DQWANIKKLESLKAGKLLPYLEITEETVSDALK 421
G P+L +P+ G +Q +N LE L G ++ ++ + L+
Sbjct: 268 LGKPLLLVPLDGQFEQTSNALYLERLGYGIVMDMEDLDPAVLRRFLE 314
>gnl|CDD|177858 PLN02208, PLN02208, glycosyltransferase family protein.
Length = 442
Score = 32.7 bits (74), Expect = 0.46
Identities = 24/98 (24%), Positives = 46/98 (46%), Gaps = 9/98 (9%)
Query: 347 WMPQRDIFAHPNMKLFISHGGLLGITEAVYEGIPVLGIPVFGDQWANIKKL-ESLKAGKL 405
W+ Q I HP++ F++H G I E++ ++ IP DQ + + E +
Sbjct: 318 WVQQPLILDHPSIGCFVNHCGPGTIWESLVSDCQMVLIPFLSDQVLFTRLMTEEFEVSVE 377
Query: 406 LPYLE---ITEETVSDALKIVLSPEYKENAEDLGTRFR 440
+ + ++E++S+A+K V+ + DLG R
Sbjct: 378 VSREKTGWFSKESLSNAIKSVMDKD-----SDLGKLVR 410
>gnl|CDD|225087 COG2176, PolC, DNA polymerase III, alpha subunit (gram-positive
type) [DNA replication, recombination, and repair].
Length = 1444
Score = 33.1 bits (76), Expect = 0.49
Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Query: 246 VNTHHT-INIARPLPANVVEIGGI---HVKPAKKLNEEMERFLN 285
++ I RPL A + E+ GI ++ A ++ E +E+F
Sbjct: 454 IDKFQFFIKPGRPLSATITELTGITDEMLENAPEIEEVLEKFRE 497
>gnl|CDD|241494 cd13340, PH-GRAM_MTMR5, Myotubularian (MTM) related 5 protein
(MTMR5) Pleckstrin Homology-Glucosyltransferases,
Rab-like GTPase activators and Myotubularins (PH-GRAM)
domain. MTMR5 (also called SBF1/SET binding factor 1)
is a catalytically inactive phosphatase that plays a
role as an adapter for the phosphatase myotubularin to
regulate myotubularintracellular location. It lacks
several amino acids in the dsPTPase catalytic pocket
which renders it catalytically inactive as a
phosphatase. MTMR5 is the most well-studied inactive
member of this family and has been implicated in
cellular growth control and oncogenic transformation.
MTMR5 and MTMR13 contain an N-terminal DENN domain, a
PH-GRAM domain, an inactive PTP domain, a SET
interaction domain, a coiled-coil domain, and a
C-terminal PH domain. Myotubularin-related proteins are
a subfamily of protein tyrosine phosphatases (PTPs) that
dephosphorylate D3-phosphorylated inositol lipids.
Mutations in this family cause the human neuromuscular
disorders myotubular myopathy and type 4B
Charcot-Marie-Tooth syndrome. 6 of the 13 MTMRs (MTMRs
5, 9-13) contain naturally occurring substitutions of
residues required for catalysis by PTP family enzymes.
Although these proteins are predicted to be
enzymatically inactive, they are thought to function as
antagonists of endogenous phosphatase activity or
interaction modules. Most MTMRs contain a N-terminal
PH-GRAM domain, a Rac-induced recruitment domain (RID)
domain, a PTP domain (which may be active or inactive),
a SET-interaction domain, and a C-terminal coiled-coil
region. In addition some members contain DENN domain
N-terminal to the PH-GRAM domain and FYVE, PDZ, and PH
domains C-terminal to the coiled-coil region. The GRAM
domain, found in myotubularins, glucosyltransferases,
and other putative membrane-associated proteins, is part
of a larger motif with a pleckstrin homology (PH) domain
fold. The PH domain family possesses multiple functions
including the ability to bind phosphoinositides via its
beta1/beta2, beta3/beta4, and beta6/beta7 connecting
loops and to other proteins. However, no
phosphoinositide binding sites have been found for the
MTMRs to date.
Length = 185
Score = 31.0 bits (70), Expect = 0.94
Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 395 KKLESLKAGKLL-PYLEITEETVSDALKIVLSPEYKENAEDLGTRFRDRPQSPLEVAIYW 453
K+L ++ KLL P L EE V D L++ L P+ +E A G P P E AI+
Sbjct: 15 KRLPPIQKPKLLRPTLLPGEECVMDGLRVYLLPDGREEAA--GGSIGGPPLLPAEGAIFL 72
Query: 454 IEYVIKYNG 462
Y + + G
Sbjct: 73 TTYRVIFKG 81
>gnl|CDD|177807 PLN00414, PLN00414, glycosyltransferase family protein.
Length = 446
Score = 31.1 bits (70), Expect = 1.4
Identities = 13/44 (29%), Positives = 24/44 (54%)
Query: 347 WMPQRDIFAHPNMKLFISHGGLLGITEAVYEGIPVLGIPVFGDQ 390
W+ Q I +HP++ F++H G + E++ ++ IP DQ
Sbjct: 319 WVEQPLILSHPSVGCFVNHCGFGSMWESLVSDCQIVFIPQLADQ 362
>gnl|CDD|129010 smart00771, ZipA_C, ZipA, C-terminal domain (FtsZ-binding).
C-terminal domain of ZipA, a component of cell division
in E.coli. It interacts with the FtsZ protein in one of
the initial steps of septum formation. The structure of
this domain is composed of three alpha-helices and a
beta-sheet consisting of six antiparallel beta-strands.
Length = 131
Score = 29.6 bits (67), Expect = 1.9
Identities = 9/32 (28%), Positives = 17/32 (53%)
Query: 282 RFLNESHNGVIYFSMGSMLKTSSFPPDKFKAF 313
R + + +G + FS+ +M+K +F D F
Sbjct: 41 RHDDLAGSGPVLFSLANMVKPGTFDLDNMDNF 72
>gnl|CDD|233397 TIGR01405, polC_Gram_pos, DNA polymerase III, alpha chain,
Gram-positive type. This model describes a polypeptide
chain of DNA polymerase III. Full-length homologs of
this protein are restricted to the Gram-positive
lineages, including the Mycoplasmas. This protein is
designated alpha chain and given the gene symbol polC,
but is not a full-length homolog of other polC genes.
The N-terminal region of about 200 amino acids is rich
in low-complexity sequence, poorly alignable, and not
included n this model [DNA metabolism, DNA replication,
recombination, and repair].
Length = 1213
Score = 30.8 bits (70), Expect = 2.2
Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
Query: 246 VNTHHT-INIARPLPANVVEIGGI---HVKPAKKLNEEMERFL 284
++ I PL A V E+ GI ++ A ++ E +E+F
Sbjct: 223 IDKFQFFIKPHEPLSAFVTELTGITQDMLENAPEIEEVLEKFK 265
>gnl|CDD|178499 PLN02911, PLN02911, inositol-phosphate phosphatase.
Length = 296
Score = 30.1 bits (68), Expect = 2.7
Identities = 31/96 (32%), Positives = 46/96 (47%), Gaps = 13/96 (13%)
Query: 360 KLFISHGGLLGITEA-VYEGIPVLGI---PVFGDQWANIKKLESLKAGKLLPYLEITE-- 413
K FI+ L G A +Y+G PVLGI PV ++W + + G+ EI+
Sbjct: 121 KSFITGKPLFGTLIALLYKGKPVLGIIDQPVLKERWVGVAGRATTLNGE-----EISTRS 175
Query: 414 -ETVSDALKIVLSPE-YKENAEDLGTRFRDRPQSPL 447
++ DA SP + +AED R RD+ + PL
Sbjct: 176 CASLKDAYLYTTSPHMFSGDAEDAFARVRDKVKVPL 211
>gnl|CDD|187832 cd09701, Cas10_III, CRISPR/Cas system-associated protein Cas10.
CRISPR (Clustered Regularly Interspaced Short
Palindromic Repeats) and associated Cas proteins
comprise a system for heritable host defense by
prokaryotic cells against phage and other foreign DNA;
Multidomain protein with permuted HD nuclease domain,
inactivated palm domain and Zn-ribbon; signature gene
for type III.
Length = 909
Score = 30.5 bits (69), Expect = 3.1
Identities = 12/48 (25%), Positives = 18/48 (37%), Gaps = 2/48 (4%)
Query: 207 YYKWYYDYKSHGAANRIIHK--YFPEIPRIQDLLNTCSLTLVNTHHTI 252
++ Y R + + Y +I RI DL + S L N I
Sbjct: 791 RFEICYIEDESDRRRRDLKRPFYLDDIDRITDLWDVLSRLLSNQQIQI 838
>gnl|CDD|225858 COG3321, COG3321, Polyketide synthase modules and related proteins
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 1061
Score = 30.1 bits (68), Expect = 4.0
Identities = 19/99 (19%), Positives = 31/99 (31%), Gaps = 17/99 (17%)
Query: 378 GIPVLGIPVFGDQWANIKKLESLKAGK-LLPYLEITEETVSDALKIVLSPEYKENAEDLG 436
V P G QWA G+ L + DAL+ +L G
Sbjct: 525 KKTVFVFPGQGSQWAG--------MGRELYALEPVFASAF-DALEALLHRLL-------G 568
Query: 437 TRFRDRPQSPLEVAIYWIEYVIKYNGAYHLQSAAVKLTW 475
+ +P + I++ A + AA+ +W
Sbjct: 569 FSLPEVIFAPDYPFLESIDFAQPALFAVSVALAALWRSW 607
>gnl|CDD|233080 TIGR00665, DnaB, replicative DNA helicase. This model describes
the helicase DnaB, a homohexameric protein required for
DNA replication. The homohexamer can form a ring around
a single strand of DNA near a replication fork. An
intein of > 400 residues is found at a conserved
location in DnaB of Synechocystis PCC6803, Rhodothermus
marinus (both experimentally confirmed), and
Mycobacterium tuberculosis. The intein removes itself
by a self-splicing reaction. The seed alignment
contains inteins so that the model built from the seed
alignment will model a low cost at common intein
insertion sites [DNA metabolism, DNA replication,
recombination, and repair].
Length = 434
Score = 29.7 bits (68), Expect = 4.2
Identities = 10/25 (40%), Positives = 19/25 (76%), Gaps = 1/25 (4%)
Query: 38 KSHQIIFDTILVELYQRGHDLTVIT 62
+HQ+IF+ IL +LY++G + ++T
Sbjct: 38 PAHQLIFEAIL-DLYEKGEPIDLVT 61
>gnl|CDD|240631 cd12154, FDH_GDH_like, Formate/glycerate dehydrogenases,
D-specific 2-hydroxy acid dehydrogenases and related
dehydrogenases. The formate/glycerate dehydrogenase
like family contains a diverse group of enzymes such as
formate dehydrogenase (FDH), glycerate dehydrogenase
(GDH), D-lactate dehydrogenase, L-alanine
dehydrogenase, and S-Adenosylhomocysteine hydrolase,
that share a common 2-domain structure. Despite often
low sequence identity, these proteins typically have a
characteristic arrangement of 2 similar domains of the
alpha/beta Rossmann fold NAD+ binding form. The NAD(P)
binding domain is inserted within the linear sequence
of the mostly N-terminal catalytic domain.
Structurally, these domains are connected by extended
alpha helices and create a cleft in which NAD(P) is
bound, primarily to the C-terminal portion of the 2nd
(internal) domain. While many members of this family
are dimeric, alanine DH is hexameric and
phosphoglycerate DH is tetrameric. 2-hydroxyacid
dehydrogenases are enzymes that catalyze the conversion
of a wide variety of D-2-hydroxy acids to their
corresponding keto acids. The general mechanism is
(R)-lactate + acceptor to pyruvate + reduced acceptor.
Formate dehydrogenase (FDH) catalyzes the
NAD+-dependent oxidation of formate ion to carbon
dioxide with the concomitant reduction of NAD+ to NADH.
FDHs of this family contain no metal ions or prosthetic
groups. Catalysis occurs though direct transfer of a
hydride ion to NAD+ without the stages of acid-base
catalysis typically found in related dehydrogenases.
Length = 310
Score = 29.1 bits (65), Expect = 4.8
Identities = 16/67 (23%), Positives = 28/67 (41%), Gaps = 5/67 (7%)
Query: 21 IRIQQCSKILAIFPTPAKSHQIIFDTILVELYQRGHDLTVI--TQYPETLVHYERMKVLD 78
+R++ + I A F A + I+V L + L V+ + P T Y ++ L
Sbjct: 31 VRVETGAGIGAGFADQA---YVQAGAIVVTLAKALWSLDVVLKVKEPLTNAEYALIQKLG 87
Query: 79 IKGTHTY 85
+ TY
Sbjct: 88 DRLLFTY 94
>gnl|CDD|241493 cd13339, PH-GRAM_MTMR13, Myotubularian (MTM) related 13 protein
Pleckstrin Homology-Glucosyltransferases, Rab-like
GTPase activators and Myotubularins (PH-GRAM) domain.
MTMR13 (also called SBF2/SET binding factor 2) is a
catalytically inactive phosphatase that plays a role as
an adapter for the phosphatase myotubularin to regulate
myotubularintracellular location. It contains a Leu
residue instead of a conserved Cys residue in the
dsPTPase catalytic loop which renders it catalytically
inactive as a phosphatase. MTMR13 has high sequence
similarity to MTMR5 and has recently been shown to be a
second gene mutated in type 4B Charcot-Marie-Tooth
syndrome. Both MTMR5 and MTMR13 contain an N-terminal
DENN domain, a PH-GRAM domain, an inactive PTP domain, a
SET interaction domain, a coiled-coil domain, and a
C-terminal PH domain. Myotubularin-related proteins are
a subfamily of protein tyrosine phosphatases (PTPs) that
dephosphorylate D3-phosphorylated inositol lipids.
Mutations in this family cause the human neuromuscular
disorders myotubular myopathy and type 4B
Charcot-Marie-Tooth syndrome. 6 of the 13 MTMRs (MTMRs
5, 9-13) contain naturally occurring substitutions of
residues required for catalysis by PTP family enzymes.
Although these proteins are predicted to be
enzymatically inactive, they are thought to function as
antagonists of endogenous phosphatase activity or
interaction modules. Most MTMRs contain a N-terminal
PH-GRAM domain, a Rac-induced recruitment domain (RID)
domain, a PTP domain (which may be active or inactive),
a SET-interaction domain, and a C-terminal coiled-coil
region. In addition some members contain DENN domain
N-terminal to the PH-GRAM domain and FYVE, PDZ, and PH
domains C-terminal to the coiled-coil region. The GRAM
domain, found in myotubularins, glucosyltransferases,
and other putative membrane-associated proteins, is part
of a larger motif with a pleckstrin homology (PH) domain
fold. The PH domain family possesses multiple functions
including the ability to bind phosphoinositides via its
beta1/beta2, beta3/beta4, and beta6/beta7 connecting
loops and to other proteins. However, no
phosphoinositide binding sites have been found for the
MTMRs to date.
Length = 184
Score = 28.8 bits (64), Expect = 5.0
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Query: 395 KKLESLKAGKLL-PYLEITEETVSDALKIVLSPEYKENAEDLGTRFRDRPQSPLEVAIYW 453
++L ++ K+L P L EE V + L+++L P+ +E A G P E A++
Sbjct: 14 RRLPPIQKPKILRPALLPGEEFVCEGLRVLLDPDGREEAT--GGLLGGPHILPAEGALFL 71
Query: 454 IEYVIKYNGAYH 465
Y I + G H
Sbjct: 72 TTYRIIFKGTPH 83
>gnl|CDD|173850 cd01161, VLCAD, Very long chain acyl-CoA dehydrogenase. VLCAD is
an acyl-CoA dehydrogenase (ACAD), which is found in the
mitochondria of eukaryotes and in some bacteria. It
catalyzes the alpha,beta dehydrogenation of the
corresponding trans-enoyl-CoA by FAD, which becomes
reduced. The reduced form of ACAD is reoxidized in the
oxidative half-reaction by electron-transferring
flavoprotein (ETF), from which the electrons are
transferred to the mitochondrial respiratory chain
coupled with ATP synthesis. VLCAD acts as a homodimer.
Length = 409
Score = 29.0 bits (65), Expect = 6.0
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 5/72 (6%)
Query: 363 ISHGGLLGITEAVYEGIPVLGIPVFGDQWANIKKLESLKAGKLLPYLEITEETV-SDALK 421
+ +T ++ I GI +FG + K L L +G+ + +TE + SDA
Sbjct: 96 VGMDLGFSVTLGAHQSIGFKGILLFGTEAQKEKYLPKLASGEWIAAFALTEPSSGSDAAS 155
Query: 422 I----VLSPEYK 429
I VLS + K
Sbjct: 156 IRTTAVLSEDGK 167
>gnl|CDD|169414 PRK08381, PRK08381, putative monovalent cation/H+ antiporter
subunit F; Reviewed.
Length = 87
Score = 27.0 bits (60), Expect = 7.5
Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 469 AAVKLTWYQYYLLDIALVLI-VGLVSVCFVLKYL 501
A + + W +YYLLD+A+VL+ V V + KY+
Sbjct: 50 AILSVLWEEYYLLDLAIVLLMVNAVGGLILAKYM 83
>gnl|CDD|99968 cd03794, GT1_wbuB_like, This family is most closely related to the
GT1 family of glycosyltransferases. wbuB in E. coli is
involved in the biosynthesis of the O26 O-antigen. It
has been proposed to function as an
N-acetyl-L-fucosamine (L-FucNAc) transferase.
Length = 394
Score = 28.8 bits (65), Expect = 7.5
Identities = 30/145 (20%), Positives = 52/145 (35%), Gaps = 31/145 (21%)
Query: 28 KILAI---FPTPAKSHQIIFDTILVELYQRGHDLTVIT---QYPETLVHYERMKVLDIKG 81
KIL + FP + EL +RGH++TVIT YP Y+ K ++ G
Sbjct: 1 KILILSQYFPPELGGGAFRTTELAEELVKRGHEVTVITGSPNYPSG-KIYKGYKREEVDG 59
Query: 82 -----THTYNSTIEDIYELSADSIKRIHINFIDQEIQVENIFLHENMKSIWNMENKYDLI 136
+KR+ +N++ + + ++ + D+I
Sbjct: 60 VRVHRVPLPPYK-------KNGLLKRL-LNYLSFALSA--------LLALLKRRRRPDVI 103
Query: 137 I-TEMFLTDAFLVIPY--LYKVPYI 158
I T L A + L P++
Sbjct: 104 IATSPPLLIALAALLLARLKGAPFV 128
>gnl|CDD|99961 cd03785, GT1_MurG, MurG is an N-acetylglucosaminyltransferase, the
last enzyme involved in the intracellular phase of
peptidoglycan biosynthesis. It transfers
N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the
C4 hydroxyl of a lipid-linked N-acetylmuramoyl
pentapeptide (NAM). The resulting disaccharide is then
transported across the cell membrane, where it is
polymerized into NAG-NAM cell-wall repeat structure.
MurG belongs to the GT-B structural superfamily of
glycoslytransferases, which have characteristic N- and
C-terminal domains, each containing a typical Rossmann
fold. The two domains have high structural homology
despite minimal sequence homology. The large cleft that
separates the two domains includes the catalytic center
and permits a high degree of flexibility.
Length = 350
Score = 28.6 bits (65), Expect = 8.7
Identities = 26/85 (30%), Positives = 37/85 (43%), Gaps = 9/85 (10%)
Query: 361 LFISHGGLLGITEAVYEGIPVLGIP----VFGDQWANIKKLESLKAGKLLPYLEITEETV 416
L IS G + E G+P + IP Q AN + L A L+P E+T E +
Sbjct: 255 LVISRAGASTVAELAALGLPAILIPLPYAADDHQTANARALVKAGAAVLIPQEELTPERL 314
Query: 417 SDAL-KIVLSPEY----KENAEDLG 436
+ AL +++ PE E A L
Sbjct: 315 AAALLELLSDPERLKAMAEAARSLA 339
>gnl|CDD|238142 cd00231, ZipA, ZipA C-terminal domain. ZipA, a membrane-anchored
protein, is one of at least nine essential gene products
necessary for assembly of the septal ring which mediates
cell division in E.coli. ZipA and FtsA directly bind
FtsZ, a homolog of eukaryotic tubulins, at the
prospective division site, followed by the sequential
addition of FtsK, FtsQ, FtsL, FtsW, FtsI, and FtsN.
ZipA contains three domains: a short N-terminal
membrane-anchored domain, a central P/Q domain that is
rich in proline and glutamine and a C-terminal domain,
which comprises almost half the protein.
Length = 130
Score = 27.3 bits (61), Expect = 9.2
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 282 RFLNESHNGVIYFSMGSMLKTSSFPPDKFKAF 313
R L+ S +G + FS+ +M+K +F PD F
Sbjct: 40 RHLSLSGSGPVLFSVANMVKPGTFDPDNMADF 71
>gnl|CDD|212130 cd11665, LamB_like, Aspergillus nidulans lactam utilization protein
LamB and similar proteins. This eukaryotic and
bacterial subfamily of the LamB/YbgL family, includes
Aspergillus nidulans protein LamB. The lamb gene locates
at the lam locus of Aspergillus nidulans, consisting of
two divergently transcribed genes, lamA and lamB, needed
for the utilization of lactams such as 2-pyrrolidinone.
Both genes are under the control of the positive
regulatory gene amdR and are subject to carbon and
nitrogen metabolite repression. Although the exact
molecular function of lamb encoding protein LamB is
unknown, it might be required for conversion of
exogenous 2-pyrrolidinone to endogenous GABA.
Length = 238
Score = 28.0 bits (63), Expect = 9.2
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 7/31 (22%)
Query: 365 HGGLLGITE-------AVYEGIPVLGIPVFG 388
HG L G+ AV + V G+PVFG
Sbjct: 109 HGALYGMAARDEEVARAVADAAKVFGVPVFG 139
>gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease
protein; Provisional.
Length = 648
Score = 28.5 bits (64), Expect = 9.3
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 8/56 (14%)
Query: 29 ILAIFPTPA-KSH---QIIFDTILVELYQRGHDLTVITQYPETLVHYERMKVLDIK 80
ILA PT A SH +++ IL +L RGH + ++T P+ ER V++I+
Sbjct: 166 ILADEPTGALDSHSGEEVM--AILHQLRDRGHTVIIVTHDPQVAAQAER--VIEIR 217
>gnl|CDD|114135 pfam05394, AvrB_AvrC, Avirulence protein. This family consists of
several avirulence proteins from Pseudomonas syringae
and Xanthomonas campestris.
Length = 326
Score = 28.3 bits (63), Expect = 9.4
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 182 IP-SYVSAYTDHMSFTERLSNTFVGLYYKWYYDYKSHGAANRIIHKYFPEIPRIQDLLN 239
IP + +S +D + +RL++ + L + D + G N I H +P+I+D L
Sbjct: 180 IPLTTISVSSDDSAIRDRLADLYKDLRRQGLKDLMARGEPNMITHTSAEYVPKIKDHLE 238
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.138 0.416
Gapped
Lambda K H
0.267 0.0747 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 26,723,547
Number of extensions: 2667027
Number of successful extensions: 2603
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2584
Number of HSP's successfully gapped: 75
Length of query: 513
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 412
Effective length of database: 6,457,848
Effective search space: 2660633376
Effective search space used: 2660633376
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (27.2 bits)