RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14941
(513 letters)
>2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD,
enzyme, nucleotide binding,
sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo
sapiens}
Length = 170
Score = 234 bits (599), Expect = 2e-75
Identities = 65/173 (37%), Positives = 98/173 (56%), Gaps = 6/173 (3%)
Query: 271 KPAKKLNEEMERFLNESH-NGVIYFSMGSMLKTSSFPPDKFKAFLKAFSKIPQRVLWKFE 329
AK L +EME F+ S NGV+ FS+GSM+ + ++ A ++IPQ+VLW+F+
Sbjct: 2 NAAKPLPKEMEDFVQSSGENGVVVFSLGSMVS--NMTEERANVIASALAQIPQKVLWRFD 59
Query: 330 DNDTSIFKPYKNIRTSSWMPQRDIFAHPNMKLFISHGGLLGITEAVYEGIPVLGIPVFGD 389
+ N R W+PQ D+ HP + FI+HGG GI EA+Y GIP++GIP+F D
Sbjct: 60 G-NKPDTLG-LNTRLYKWIPQNDLLGHPKTRAFITHGGANGIYEAIYHGIPMVGIPLFAD 117
Query: 390 QWANIKKLESLKAGKLLPYLEITEETVSDALKIVLS-PEYKENAEDLGTRFRD 441
Q NI +++ A + + ++ + +ALK V++ P YKEN L D
Sbjct: 118 QPDNIAHMKARGAAVRVDFNTMSSTDLLNALKRVINDPSYKENVMKLSRIQHD 170
>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance,
glycosylation, enzyme, macrolide, carbohydrate; HET: ERY
UDP; 1.7A {Streptomyces antibioticus}
Length = 430
Score = 205 bits (523), Expect = 6e-61
Identities = 69/438 (15%), Positives = 131/438 (29%), Gaps = 49/438 (11%)
Query: 27 SKILAIFPTPAKSHQIIFDTILVELYQRGHDLTVITQYPETLVHYERMKVLDIKGTHTYN 86
+ I +F A H ++ EL RGH +T P H+
Sbjct: 8 AHIA-MFSIAAHGHVNPSLEVIRELVARGHRVTYAI--PPVFADKVAATGPRPVLYHSTL 64
Query: 87 STIEDIYELSADSIKRIHINFIDQEIQVENIFLHENMKSIWNMENKYDLIITEMFLTDAF 146
+ E ++ F++ + I + + ++ DL++ ++ A
Sbjct: 65 PGPDADPEAWGSTLLDNVEPFLN-----DAIQALPQLADAYA-DDIPDLVLHDITSYPAR 118
Query: 147 LVIPYLYKVPYISIASSTLHPQHSERLGLPDNPSYIPSYVSAYTDHMSFTERLSNTFVGL 206
++ + VP +S++ L Y TER +
Sbjct: 119 VL-ARRWGVPAVSLSP-----------NLVAWKGYEEEVAEPMWREPRQTERGRA-YYAR 165
Query: 207 YYKWYYDYKSHGAANRIIHKYFPEIPRIQDLLNTCSLTLVNTHHTINIARPLPANVVEIG 266
+ W + E P SL L+ + R +G
Sbjct: 166 FEAWLKEN------------GITEHPDTFASHPPRSLVLIPKALQPHADRVDEDVYTFVG 213
Query: 267 GIHVKPAKKLNEEMERFLNES-HNGVIYFSMGSMLKTSSFPPDKFKAFLKAFSKIPQRVL 325
A E + + V+ S+GS P ++ ++AF +P L
Sbjct: 214 ACQGDRA-----EEGGWQRPAGAEKVVLVSLGSAFTK---QPAFYRECVRAFGNLPGWHL 265
Query: 326 WKF--EDNDTSIFKPY-KNIRTSSWMPQRDIFAHPNMKLFISHGGLLGITEAVYEGIPVL 382
+ N+ W+PQ I LF++H G G E + P++
Sbjct: 266 VLQIGRKVTPAELGELPDNVEVHDWVPQLAILRQA--DLFVTHAGAGGSQEGLATATPMI 323
Query: 383 GIPVFGDQWANIKKLESLKAGKLLPYLEITEETVSDALKIVLS-PEYKENAEDLGTRFRD 441
+P DQ+ N L+ L + L E T + + + ++ PE +
Sbjct: 324 AVPQAVDQFGNADMLQGLGVARKLATEEATADLLRETALALVDDPEVARRLRRIQAEMAQ 383
Query: 442 RPQSPLEVAIYWIEYVIK 459
+ + E +
Sbjct: 384 EGGTRRAADLIEAELPAR 401
>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate,
glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A
{Streptomyces antibioticus}
Length = 424
Score = 191 bits (488), Expect = 7e-56
Identities = 72/446 (16%), Positives = 150/446 (33%), Gaps = 46/446 (10%)
Query: 28 KILAIFPTPAKSHQIIFDTILVELYQRGHDLTVITQYPETLVHYER--MKVLDIKGTHTY 85
I F P H I+ EL RGH ++ E + +
Sbjct: 14 HIS-FFNIPGHGHVNPSLGIVQELVARGHRVSYAIT-DEFAAQVKAAGATPVVYDSILPK 71
Query: 86 NSTIEDIYELSADSIKRIHINFIDQEIQVENIFLHENMKSIWNMENKYDLIITEMFLTDA 145
S E+ + +S + ++ + + L + +++ DLI+ ++ A
Sbjct: 72 ESNPEESWPEDQESAMGLFLDEAVRVLP----QLEDAYA-----DDRPDLIVYDIASWPA 122
Query: 146 FLVIPYLYKVPYISIASSTLHPQHSER----LGLPDNPSYIPSYVSAYTDHMSFTERLSN 201
V+ + +P++ ++ + + + E + P + A T +
Sbjct: 123 -PVLGRKWDIPFVQLSPTFVAYEGFEEDVPAVQDPTADRGEEAAAPAGTGDAEEGAEAED 181
Query: 202 TFVGLYYKWYYDYKSHGAANRIIHKYFPEIPRIQDLLNTCSLTLVNTHHTINIARP-LPA 260
V + + + HG + L + +V T I +
Sbjct: 182 GLVRFFTRLSAFLEEHGVD-----------TPATEFLIAPNRCIVALPRTFQIKGDTVGD 230
Query: 261 NVVEIGGIHVKPAKKLNEEMERFLNES-HNGVIYFSMGSMLKTSSFPPDKFKAFLKAFSK 319
N +G + + + V+ ++GS + D ++ L A
Sbjct: 231 NYTFVGPTYGDRS-----HQGTWEGPGDGRPVLLIALGSAF---TDHLDFYRTCLSAVDG 282
Query: 320 IPQRVLWKF-EDNDTSIFKPY-KNIRTSSWMPQRDIFAHPNMKLFISHGGLLGITEAVYE 377
+ V+ D + N+ W+PQ DI FI+H G+ EA+
Sbjct: 283 LDWHVVLSVGRFVDPADLGEVPPNVEVHQWVPQLDILTK--ASAFITHAGMGSTMEALSN 340
Query: 378 GIPVLGIPVFGDQWANIKKLESLKAGKLLPYLEITEETVSDALKIVLS-PEYKENAEDLG 436
+P++ +P +Q N +++ L G+ +P ++T E + +A+ V S P E +
Sbjct: 341 AVPMVAVPQIAEQTMNAERIVELGLGRHIPRDQVTAEKLREAVLAVASDPGVAERLAAVR 400
Query: 437 TRFRDRPQSPLEVAIYWIEYVIKYNG 462
R+ A +E ++ G
Sbjct: 401 QEIREAG--GARAAADILEGILAEAG 424
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A
{Micromonospora echinospora}
Length = 402
Score = 149 bits (379), Expect = 2e-40
Identities = 71/439 (16%), Positives = 155/439 (35%), Gaps = 53/439 (12%)
Query: 27 SKILAIFPTPAKSHQIIFDTILVELYQRGHDLTVITQYPETLVHYER--MKVLDIKGTHT 84
IL H ++ EL +RGH +T +T P + +V+ K
Sbjct: 5 RHIL-FANVQGHGHVYPSLGLVSELARRGHRITYVTT-PLFADEVKAAGAEVVLYKSEFD 62
Query: 85 YNSTIEDIYELSADSIKRIHINFIDQEIQVENIFLHENMKSIWNMENKYDLIITEMFLTD 144
E + + D+ ++H+ ++ EN+ + + +N DL++ ++F
Sbjct: 63 TFHVPEVVKQ--EDAETQLHLVYVR-----ENVAILRAAEEALG-DNPPDLVVYDVFPFI 114
Query: 145 AFLVIPYLYKVPYISIASSTLHPQHSERLGLPDNPSYIPSYVSAYTDHMSFTERLSNTFV 204
A ++ + P + + +H + S H + E + + V
Sbjct: 115 AGRLLAARWDRPAVRLTGGFAANEHYSLFK--------ELWKSNGQRHPADVEAVHSVLV 166
Query: 205 GLYYKWYYDYKSHGAANRIIHKYFPEIPRIQDLLNTCSLTLVNTHHTINIARPLPANVVE 264
L K +G + +Y+ EI + + S A
Sbjct: 167 DLLGK-------YGVDTP-VKEYWDEIEGLTIVFLPKSFQPF--------AETFDERFAF 210
Query: 265 IGGIHVKPAKKLNEEMERFLNES-HNGVIYFSMGSMLKTSSFPPDKFKAFLKAFSKIPQR 323
+G P + + V+ S+G+ + P+ F+A +AF+ P
Sbjct: 211 VG-----PTLTGRDGQPGWQPPRPDAPVLLVSLGNQF---NEHPEFFRACAQAFADTPWH 262
Query: 324 VLWKF-EDNDTSIFKPY-KNIRTSSWMPQRDIFAHPNMKLFISHGGLLGITEAVYEGIPV 381
V+ D ++ P N+ W+P + AH + ++HG + EA G+P+
Sbjct: 263 VVMAIGGFLDPAVLGPLPPNVEAHQWIPFHSVLAH--ARACLTHGTTGAVLEAFAAGVPL 320
Query: 382 LGIPVFG-DQWANIKKLESLKAGKLLPYLEITEETVSDALKIVLS-PEYKENAEDLGTRF 439
+ +P F + + +++ L G +L ++ ++ +A++ + + +E +
Sbjct: 321 VLVPHFATEAAPSAERVIELGLGSVLRPDQLEPASIREAVERLAADSAVRERVRRMQRDI 380
Query: 440 RDRPQSPLEVAIYWIEYVI 458
A +E +
Sbjct: 381 LSSG--GPARAADEVEAYL 397
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure
initiative, center for eukaryotic structural genomics;
HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB:
3iaa_A*
Length = 415
Score = 141 bits (357), Expect = 3e-37
Identities = 65/443 (14%), Positives = 147/443 (33%), Gaps = 62/443 (13%)
Query: 27 SKILAIFPTPAKSHQIIFDT--ILVELYQRGHDLTVITQYPETLVHYERMKVLDIKGT-- 82
+ +L I + I T ++ EL +RGH ++ +T + ++
Sbjct: 21 AHLL-IVNVASHGL--ILPTLTVVTELVRRGHRVSYVTA-GG----FAEP----VRAAGA 68
Query: 83 --HTYNSTIEDIYELSADSIKRIHINFIDQEIQVENIFLHENMKSIWNMENKYDLIITEM 140
Y S I D + + ++ EN+ + + + DL++ +
Sbjct: 69 TVVPYQSEIIDADAAEVFGSDDLGVRPHLMYLR-ENVSVLRATAEALDGD-VPDLVLYDD 126
Query: 141 FLTDAFLVIPYLYKVPYISIASSTLHPQHSERLGLPDNPSYIPSYVSAYTDHMSFTERLS 200
F A ++ ++ P + ++++ +H D ++ +
Sbjct: 127 FPFIAGQLLAARWRRPAVRLSAAFASNEHYSFS----------------QDMVTLAGTID 170
Query: 201 NTFVGLYYKWYYDYKSHGAANRIIHKYFPEIPRIQDLLNTCSLTLVNTHHTINIARP-LP 259
+ ++ ++ ++ + + L LV IA
Sbjct: 171 PLDLPVFRDTL---------RDLLAEHGLSRSVVDCWNHVEQLNLVFVPKAFQIAGDTFD 221
Query: 260 ANVVEIGGIHVKPAKKLNEEMERFLNES-HNGVIYFSMGSMLKTSSFPPDKFKAFLKAFS 318
V +G + + + V+ S+G+ + P F+ +AF
Sbjct: 222 DRFVFVGPCFDDRR-----FLGEWTRPADDLPVVLVSLGTTF---NDRPGFFRDCARAFD 273
Query: 319 KIPQRVLWKF-EDNDTSIFKPY-KNIRTSSWMPQRDIFAHPNMKLFISHGGLLGITEAVY 376
P V+ D + N+ W+P + + ++HGG+ + EA+Y
Sbjct: 274 GQPWHVVMTLGGQVDPAALGDLPPNVEAHRWVPHVKVLEQ--ATVCVTHGGMGTLMEALY 331
Query: 377 EGIPVLGIPVFGDQWANIKKLESLKAGKLLPYLEITEETVSDALKIVLS-PEYKENAEDL 435
G P++ +P D ++++ L G +LP + +T+ A+ V + P E +
Sbjct: 332 WGRPLVVVPQSFDVQPMARRVDQLGLGAVLPGEKADGDTLLAAVGAVAADPALLARVEAM 391
Query: 436 GTRFRDRPQSPLEVAIYWIEYVI 458
R A +E +
Sbjct: 392 RGHVRRAG--GAARAADAVEAYL 412
>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin,
teicoplanin, ORF1, natural products, antibiotic; HET:
UDP; 1.15A {Amycolatopsis orientalis} PDB: 3h4i_A*
1pn3_A* 1pnv_A*
Length = 404
Score = 120 bits (302), Expect = 5e-30
Identities = 58/308 (18%), Positives = 97/308 (31%), Gaps = 36/308 (11%)
Query: 134 DLIITEMFLTDAFLVIPYLYKVPYISIASSTLHPQHSERLGLPDNPSYIPSYVSAYTDHM 193
D ++T L A V S+A E+LG+P Y
Sbjct: 94 DAVVTTGLLPAAVAVR---------SMA---------EKLGIP--------YRYTVLSPD 127
Query: 194 SFTERLSNTFVGLYYKWYYDYKSHGAANRIIHKYF-PEIPRIQDLLNTCSLTLVNTHHTI 252
S +Y D A N P + + D T L +
Sbjct: 128 HLPSEQSQAERDMYN-QGADRLFGDAVNSHRASIGLPPVEHLYDYGYTDQPWLAADPV-L 185
Query: 253 NIARPLPANVVEIGGIHVKPAKKLNEEMERFLNESHNGVIYFSMGSMLKTSSFPPDKFKA 312
+ RP V+ G + + L+ E+E FL + + +Y GS P + +
Sbjct: 186 SPLRPTDLGTVQTGAWILPDQRPLSAELEGFL-RAGSPPVYVGFGSG----PAPAEAARV 240
Query: 313 FLKAFSKIPQRVLWKFEDNDTSIFKPYKNIRTSSWMPQRDIFAHPNMKLFISHGGLLGIT 372
++A +RV+ + + + +F + + HGG T
Sbjct: 241 AIEAVRAQGRRVVLSSGWAGLGRIDEGDDCLVVGEVNHQVLF--GRVAAVVHHGGAGTTT 298
Query: 373 EAVYEGIPVLGIPVFGDQWANIKKLESLKAGKLLPYLEITEETVSDALKIVLSPEYKENA 432
G P + +P DQ ++ L G T E++S AL L+P + A
Sbjct: 299 AVTRAGAPQVVVPQKADQPYYAGRVADLGVGVAHDGPTPTVESLSAALATALTPGIRARA 358
Query: 433 EDLGTRFR 440
+ R
Sbjct: 359 AAVAGTIR 366
>1iir_A Glycosyltransferase GTFB; rossmann fold; 1.80A {Amycolatopsis
orientalis} SCOP: c.87.1.5
Length = 415
Score = 118 bits (297), Expect = 3e-29
Identities = 38/185 (20%), Positives = 68/185 (36%), Gaps = 7/185 (3%)
Query: 256 RPLPANVVEIGGIHVKPAKKLNEEMERFLNESHNGVIYFSMGSMLKTSSFPPDKFKAFLK 315
+P + V+ G + + L+ E+ FL ++ +Y GS+ P D + +
Sbjct: 206 QPTDLDAVQTGAWILPDERPLSPELAAFL-DAGPPPVYLGFGSL----GAPADAVRVAID 260
Query: 316 AFSKIPQRVLWKFEDNDTSIFKPYKNIRTSSWMPQRDIFAHPNMKLFISHGGLLGITEAV 375
A +RV+ D + + + + +F + I HGG A
Sbjct: 261 AIRAHGRRVILSRGWADLVLPDDGADCFAIGEVNHQVLF--GRVAAVIHHGGAGTTHVAA 318
Query: 376 YEGIPVLGIPVFGDQWANIKKLESLKAGKLLPYLEITEETVSDALKIVLSPEYKENAEDL 435
G P + +P DQ ++ L G T +++S AL L+PE A +
Sbjct: 319 RAGAPQILLPQMADQPYYAGRVAELGVGVAHDGPIPTFDSLSAALATALTPETHARATAV 378
Query: 436 GTRFR 440
R
Sbjct: 379 AGTIR 383
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU
initiative, center for eukaryotic structural genomics,
CESG fold; HET: TYD; 2.08A {Micromonospora echinospora}
PDB: 3oth_A*
Length = 412
Score = 116 bits (293), Expect = 1e-28
Identities = 42/201 (20%), Positives = 77/201 (38%), Gaps = 15/201 (7%)
Query: 255 ARPLPANVVEIGGIHVKPAKKLNEEMERFLNESHNG--VIYFSMGSMLKTSSFPPDKFKA 312
E+ + ++ +L+ ++Y ++G+ + +A
Sbjct: 210 EFRARPRRHELRPVPFAEQ----GDLPAWLSSRDTARPLVYLTLGTSS---GGTVEVLRA 262
Query: 313 FLKAFSKIPQR-VLWKFEDNDTSIFKPY-KNIRTSSWMPQRDIFAHPNMKLFISHGGLLG 370
+ + + ++ D S N+R SW+PQ + H + L + HGG
Sbjct: 263 AIDGLAGLDADVLVASGPSLDVSGLGEVPANVRLESWVPQAALLPH--VDLVVHHGGSGT 320
Query: 371 ITEAVYEGIPVLGIPVFGDQWANIKKLESLKAGKLLPYLEITEETVSDALKIVLS-PEYK 429
A+ G+P L P GD +AN + + AG L I+ ++VS A K +L+ Y+
Sbjct: 321 TLGALGAGVPQLSFPWAGDSFANAQAVAQAGAGDHLLPDNISPDSVSGAAKRLLAEESYR 380
Query: 430 ENAEDLGTRFRDRPQSPLEVA 450
A + P P EV
Sbjct: 381 AGARAVAAEIAAMP-GPDEVV 400
>2yjn_A ERYCIII, glycosyltransferase; transferase, cytochrome P450; 3.09A
{Saccharopolyspora erythraea}
Length = 441
Score = 114 bits (286), Expect = 1e-27
Identities = 64/437 (14%), Positives = 135/437 (30%), Gaps = 45/437 (10%)
Query: 28 KILAIFPTPAKSHQIIFDTILVELYQRGHDLTVITQYPETLVHYER--MKVLDIKGTHTY 85
+++ +KSH + GH++ V+ P + + +
Sbjct: 22 RVV-FSSMASKSHLFGLVPLAWAFRAAGHEVRVVAS-PALTEDITAAGLTAVPVGTDVDL 79
Query: 86 NSTIEDIYELSADSIKRIHINFIDQEIQVENIFLHENMKSIWNMENKYDLIITEMFLTDA 145
+ D ++ + + D + H Y L+ + +
Sbjct: 80 VDFMTHAGHDIIDYVRSLDFSERDPA---TLTWEHLLGMQTVLTPTFYALMSPDTLIEG- 135
Query: 146 FLVIPYLYKVPYISIASSTLHPQHS---ERLGLPDNPSYIPSYVSAYTDHMSFTERLSNT 202
++ + K + L G P + T R
Sbjct: 136 --MVSFCRKWRPDLVIWEPLTFAAPIAAAVTGTP--------HARLLWGPDITT-RARQN 184
Query: 203 FVGLYYKWYYDYKSHGAANRIIHKYFPEIPRIQDLLNTCSLTLVNTHHTINI---ARPLP 259
F+GL +++ A + + +V TI+ A L
Sbjct: 185 FLGLLPDQPEEHREDPLAEWLTW------TLEKYGGPAFDEEVVVGQWTIDPAPAAIRLD 238
Query: 260 ANVVEIGGIHVK---PAKKLNEEMERFLNE-SHNGVIYFSMGSMLKTSSFPPDKFKAFLK 315
+ +G +V P+ + +L++ + ++G + +S + L
Sbjct: 239 TGLKTVGMRYVDYNGPS-----VVPEWLHDEPERRRVCLTLGISSRENSIGQVSIEELLG 293
Query: 316 AFSKIPQRVLWKFEDNDTSIFKPY-KNIRTSSWMPQRDIFAHPNMKLFISHGGLLGITEA 374
A + ++ F+ N+RT ++P + + HGG A
Sbjct: 294 AVGDVDAEIIATFDAQQLEGVANIPDNVRTVGFVPMHALLPT--CAATVHHGGPGSWHTA 351
Query: 375 VYEGIPVLGIPVFGDQWANIKKLESLKAGKLLPYLEITEETVSDALKIVLS-PEYKENAE 433
G+P + +P D ++ + AG LP E+T + + +++K VL P ++ A
Sbjct: 352 AIHGVPQVILPDGWDTGVRAQRTQEFGAGIALPVPELTPDQLRESVKRVLDDPAHRAGAA 411
Query: 434 DLGTRFRDRPQSPLEVA 450
+ P SP EV
Sbjct: 412 RMRDDMLAEP-SPAEVV 427
>1rrv_A Glycosyltransferase GTFD; GT-B, glycosyltransferase, rossmann fold,
glycopeptide, VACO antibiotic, transferase-antibiotic
complex; HET: OMZ GHP OMY 3FG TYD BGC; 2.00A
{Amycolatopsis orientalis} SCOP: c.87.1.5
Length = 416
Score = 113 bits (284), Expect = 2e-27
Identities = 49/296 (16%), Positives = 91/296 (30%), Gaps = 26/296 (8%)
Query: 158 ISIASSTLHPQHSERLGLPDNPSYIPSYVSAYTDHMSFTERLSNTFVGLYYKWYYDYKSH 217
+A++T +E+LGLP + Y +++
Sbjct: 102 GDLAAATGVRSVAEKLGLP----FF--YSVPSPVYLASPHLPPAYDEPTTPGVTDIRVLW 155
Query: 218 GAANRIIHKYF-------------PEIPRIQDLLNTCSLTLVNTHHTINIARPLPANVVE 264
+ P + + + L + V+
Sbjct: 156 EERAARFADRYGPTLNRRRAEIGLPPVEDVFGYGHGERPLLAADPVLA--PLQPDVDAVQ 213
Query: 265 IGGIHVKPAKKLNEEMERFLNESHNGVIYFSMGSMLKTSSFPPDKFKAFLKAFSKIPQRV 324
G + + L E+E FL + + ++ GS D K ++A +RV
Sbjct: 214 TGAWLLSDERPLPPELEAFL-AAGSPPVHIGFGSSSGRG--IADAAKVAVEAIRAQGRRV 270
Query: 325 LWKFEDNDTSIFKPYKNIRTSSWMPQRDIFAHPNMKLFISHGGLLGITEAVYEGIPVLGI 384
+ + + + + + +F + I HG A G+P L I
Sbjct: 271 ILSRGWTELVLPDDRDDCFAIDEVNFQALF--RRVAAVIHHGSAGTEHVATRAGVPQLVI 328
Query: 385 PVFGDQWANIKKLESLKAGKLLPYLEITEETVSDALKIVLSPEYKENAEDLGTRFR 440
P DQ ++ +L G T E++S AL VL+PE + AE +
Sbjct: 329 PRNTDQPYFAGRVAALGIGVAHDGPTPTFESLSAALTTVLAPETRARAEAVAGMVL 384
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati
enzyme discovery for natural product biosynthesis,
natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Length = 398
Score = 108 bits (271), Expect = 7e-26
Identities = 31/167 (18%), Positives = 61/167 (36%), Gaps = 10/167 (5%)
Query: 291 VIYFSMGSML-----KTSSFPPDKFKAFLKAFSKIPQRVLWKFEDNDTSIFKPY-KNIRT 344
+ + G+ + T +A + K+ V+ D +P + +
Sbjct: 229 RLCLTFGTRVPLPNTNTIPGGLSLLQALSQELPKLGFEVVVAVSDKLAQTLQPLPEGVLA 288
Query: 345 SSWMPQRDIFAHPNMKLFISHGGLLGITEAVYEGIPVLGIPVFGDQWANIKKLESLKAGK 404
+ P I + + HGG + EG+P + +PV + W + + L + AG
Sbjct: 289 AGQFPLSAIMPA--CDVVVHHGGHGTTLTCLSEGVPQVSVPVIAEVWDSARLLHAAGAGV 346
Query: 405 LLPYLEITEETVSDALKIVLS-PEYKENAEDLGTRFRDRPQSPLEVA 450
+P+ + E+V A + Y NA L P +P ++
Sbjct: 347 EVPWEQAGVESVLAACARIRDDSSYVGNARRLAAEMATLP-TPADIV 392
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC;
1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Length = 391
Score = 107 bits (270), Expect = 9e-26
Identities = 34/164 (20%), Positives = 56/164 (34%), Gaps = 7/164 (4%)
Query: 291 VIYFSMGSMLKTSSFPPDKFKAFLKAFSKIPQRVLWKFEDNDTSIFKPY-KNIRTSSWMP 349
+ MG M+ ++ P +A A + ++ N R + +P
Sbjct: 220 RVCICMGRMVLNATGPAPLLRAVAAATELPGVEAVIAVPPEHRALLTDLPDNARIAESVP 279
Query: 350 QRDIFAHPNMKLFISHGGLLGITEAVYEGIPVLGIPVFGDQWANIKKLESLKAGKLLPYL 409
+L I GG A GIP L +P + DQ+ + L + AG LP
Sbjct: 280 LNLFLRT--CELVICAGGSGTAFTATRLGIPQLVLPQYFDQFDYARNLAAAGAGICLPDE 337
Query: 410 EIT--EETVSDALKIVLS-PEYKENAEDLGTRFRDRPQSPLEVA 450
+ E +D++ VL + A L P P +
Sbjct: 338 QAQSDHEQFTDSIATVLGDTGFAAAAIKLSDEITAMP-HPAALV 380
>2p6p_A Glycosyl transferase; X-RAY-diffraction,urdamycina-biosynthesis;
1.88A {Streptomyces fradiae}
Length = 384
Score = 107 bits (270), Expect = 9e-26
Identities = 29/163 (17%), Positives = 54/163 (33%), Gaps = 6/163 (3%)
Query: 291 VIYFSMGSMLKTSSFP--PDKFKAFLKAFSKIPQRVLWKFEDNDTSIFKPYKNIRTSSWM 348
+ + GS + S+ D + K + ++ D + W
Sbjct: 212 RVLVTSGSRVAKESYDRNFDFLRGLAKDLVRWDVELIVAAPDTVAEALRAEVPQARVGWT 271
Query: 349 PQRDIFAHPNMKLFISHGGLLGITEAVYEGIPVLGIPVFGDQWANIKKLESLKAGKLLPY 408
P + L + H G + + G+P L IP A +++ A L
Sbjct: 272 PLDVVAPT--CDLLVHHAGGVSTLTGLSAGVPQLLIPKGSVLEAPARRVADYGAAIALLP 329
Query: 409 LEITEETVSDALKIVLS-PEYKENAEDLGTRFRDRPQSPLEVA 450
E + E ++D+ + + + Y A+DL P P V
Sbjct: 330 GEDSTEAIADSCQELQAKDTYARRAQDLSREISGMP-LPATVV 371
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU
initiative, center for eukaryotic structural genomics,
CESG fold; HET: TYD C0T; 1.60A {Micromonospora
echinospora} PDB: 3d0q_A* 3d0r_A*
Length = 398
Score = 100 bits (251), Expect = 3e-23
Identities = 30/162 (18%), Positives = 61/162 (37%), Gaps = 8/162 (4%)
Query: 291 VIYFSMGSMLKTSSFPPDKFKAFLKAFSKIPQRVLWKFEDNDTSIFKPY-KNIRTSSWMP 349
+ +MG++ +F + + A ++ + D D S +N+R W P
Sbjct: 234 EVAITMGTIE-LQAFGIGAVEPIIAAAGEVDADFVLALGDLDISPLGTLPRNVRAVGWTP 292
Query: 350 QRDIFAHPNMKLFISHGGLLGITEAVYEGIPVLGIPVFGDQWANIKKLESLKAGKLLPYL 409
+ + HGG + A+ GIP L P DQ+ + + + G L
Sbjct: 293 LHTLLRT--CTAVVHHGGGGTVMTAIDAGIPQLLAPDPRDQFQHTAREAVSRRGIGLVST 350
Query: 410 EITEETVSDALKIVLS-PEYKENAEDLGTRFRDRPQSPLEVA 450
+++ +D L+ ++ + A ++ P +P E
Sbjct: 351 --SDKVDADLLRRLIGDESLRTAAREVREEMVALP-TPAETV 389
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 61.0 bits (147), Expect = 6e-10
Identities = 75/488 (15%), Positives = 146/488 (29%), Gaps = 132/488 (27%)
Query: 63 QYPETLVHYER--MKVLDIKGTHTYNSTIEDIYE--LSADSIKRIHINFIDQEIQVENIF 118
QY + L +E + D K ++D+ + LS + I I I D +F
Sbjct: 17 QYKDILSVFEDAFVDNFDCK-------DVQDMPKSILSKEEIDHI-IMSKDAVSGTLRLF 68
Query: 119 LHENMKSIWNMENKYDLIITEMFLTDA------FLV--IPYLYKVPYISIASSTLHPQHS 170
W + +K + ++ + F+ + FL+ I + P + + ++ +
Sbjct: 69 --------WTLLSKQEEMV-QKFVEEVLRINYKFLMSPIKTEQRQPSMM---TRMYIEQR 116
Query: 171 ERLGLPDNPSYIPSYVSAYTDHMSFTERL----SNTFVGLYY-----KW------YYDYK 215
+RL DN + VS ++ + L V + K YK
Sbjct: 117 DRL-YNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYK 175
Query: 216 SHGAANRIIH-----KYFPEIPRIQDLLNTCSLTLVNTHHTINIARPLPANVVEIGGIHV 270
+ I ++ L N + + + + I
Sbjct: 176 VQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSI----- 230
Query: 271 KPAKKLNEEMERFLNE-------------SHNGVI-YFSMGS-MLKTSSFPPDKFKA-FL 314
E+ R L + F++ +L T+ K FL
Sbjct: 231 ------QAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTR---FKQVTDFL 281
Query: 315 KAFSKIPQRV---LWKFEDNDT-SIFKPYKNIRTSSWMPQRDIFAHPNMKLFISHGGLLG 370
A + + ++ S+ Y + R +P+ + +P +S
Sbjct: 282 SAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD-LPREVLTTNP---RRLS-----I 332
Query: 371 ITEAVYEGIPVLGIPVFGDQWANIKKLESLKAGKLLPYLEITEETVSDALKIVLSP-EYK 429
I E++ +G+ W N K + K + +L VL P EY+
Sbjct: 333 IAESIRDGL---------ATWDNWKHVNCDK----------LTTIIESSLN-VLEPAEYR 372
Query: 430 ENAEDLGTRFRDRPQSPLEV-AIYWIEYVIKYNGA------YHLQSAAVKLTW---YQYY 479
+ + L F P + ++ W + + + H S K
Sbjct: 373 KMFDRLSV-FPPSAHIPTILLSLIWFD--VIKSDVMVVVNKLHKYSLVEK--QPKESTIS 427
Query: 480 LLDIALVL 487
+ I L L
Sbjct: 428 IPSIYLEL 435
Score = 48.3 bits (114), Expect = 5e-06
Identities = 47/301 (15%), Positives = 91/301 (30%), Gaps = 102/301 (33%)
Query: 16 ILLMCIR------IQQCSKILAIFPTPAKSHQIIFDTILVELYQRGHDLTVITQYPETLV 69
I+ + ++ L++FP A I +L ++ VI +V
Sbjct: 358 IIESSLNVLEPAEYRKMFDRLSVFPPSAH----IPTILLSLIWFD-----VIKSDVMVVV 408
Query: 70 HYERMKVLDIKGTHTYNSTIEDIY---ELSADSIKRIHINFIDQEIQVENIFLHENMKSI 126
+ L K +I IY ++ ++ +H + +D
Sbjct: 409 NKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDH---------------- 452
Query: 127 WNMENKYDLIITEMFLTDAFLVIP---YLYKVPYISIASSTLHPQHSERLGLPDNPSYIP 183
+N+ +D +D + Y Y +I H H + + P+ +
Sbjct: 453 YNIPKTFD--------SDDLIPPYLDQYFYS--HIG------H--HLKNIEHPERMTLFR 494
Query: 184 SYVSAYTDHMSFTER--------------LSNTFVGLYYKWYYDY--KSHGAANRIIHKY 227
+ D F E+ + NT L K+Y Y + R+++
Sbjct: 495 MV---FLD-FRFLEQKIRHDSTAWNASGSILNTLQQL--KFYKPYICDNDPKYERLVNA- 547
Query: 228 FPEIPRIQDLLNTCSLTLVNTHHTINIARPLPANVVEIGGIHVKPAKKLNEEMERFLNES 287
I D L L+ + +T +++ I L E E E+
Sbjct: 548 ------ILDFLPKIEENLICSKYT---------DLLRIA---------LMAEDEAIFEEA 583
Query: 288 H 288
H
Sbjct: 584 H 584
Score = 30.2 bits (67), Expect = 1.9
Identities = 25/114 (21%), Positives = 39/114 (34%), Gaps = 35/114 (30%)
Query: 413 EETVSDALKIVLSPEYKENAEDLGTRFRDRPQSPLEVAIYWIEYVIK-YNGA-----YH- 465
EE V ++ VL YK L + + + P + +IE + YN Y+
Sbjct: 76 EEMVQKFVEEVLRINYKF----LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV 131
Query: 466 --------LQSAAVKLTWYQYYLLDIALVLIVG--------LV-SVCFVLKYLC 502
L+ A ++L + VLI G + VC K C
Sbjct: 132 SRLQPYLKLRQALLELRPAKN-------VLIDGVLGSGKTWVALDVCLSYKVQC 178
>2pq6_A UDP-glucuronosyl/UDP-glucosyltransferase; glycosylation,
isoflavonoid, uridine diphosphate glycosyltransferase;
2.10A {Medicago truncatula} SCOP: c.87.1.10
Length = 482
Score = 56.2 bits (136), Expect = 1e-08
Identities = 37/164 (22%), Positives = 69/164 (42%), Gaps = 27/164 (16%)
Query: 291 VIYFSMGSMLKTSSFPPDKFKAF---LKAFSKIPQRVLW----KFEDNDTSIFKP-YKNI 342
V+Y + GS + P++ F L K + LW + IF + N
Sbjct: 297 VVYVNFGST---TVMTPEQLLEFAWGLAN-CK--KSFLWIIRPDLVIGGSVIFSSEFTN- 349
Query: 343 RTS------SWMPQRDIFAHPNMKLFISHGGLLGITEAVYEGIPVLGIPVFGDQWANIKK 396
+ SW PQ + HP++ F++H G TE++ G+P+L P F DQ + +
Sbjct: 350 EIADRGLIASWCPQDKVLNHPSIGGFLTHCGWNSTTESICAGVPMLCWPFFADQPTDCRF 409
Query: 397 LES-LKAGKLLPYLEITEETVSDALKIVL----SPEYKENAEDL 435
+ + + G + + E ++ + V+ + K+ A +L
Sbjct: 410 ICNEWEIGMEIDT-NVKREELAKLINEVIAGDKGKKMKQKAMEL 452
>2c1x_A UDP-glucose flavonoid 3-O glycosyltransferase; WINE, catalysis,
glycosylation; HET: UDP B3P; 1.9A {Vitis vinifera} SCOP:
c.87.1.10 PDB: 2c1z_A* 2c9z_A*
Length = 456
Score = 52.6 bits (127), Expect = 1e-07
Identities = 38/156 (24%), Positives = 66/156 (42%), Gaps = 14/156 (8%)
Query: 291 VIYFSMGSMLKTSSFPPDKFKAFLKAFSKIPQRVLWKFEDNDTSIFKPYKNIRTS----- 345
V+Y S G++ ++ PP + A +A +W D +T
Sbjct: 273 VVYISFGTV---TTPPPAEVVALSEALEASRVPFIWSLRDKARVHLPEGFLEKTRGYGMV 329
Query: 346 -SWMPQRDIFAHPNMKLFISHGGLLGITEAVYEGIPVLGIPVFGDQWANIKKLES-LKAG 403
W PQ ++ AH + F++H G + E+V G+P++ P FGDQ N + +E L+ G
Sbjct: 330 VPWAPQAEVLAHEAVGAFVTHCGWNSLWESVAGGVPLICRPFFGDQRLNGRMVEDVLEIG 389
Query: 404 KLLPYLEITEETVSDALKIVLS----PEYKENAEDL 435
+ T+ + +LS + +EN L
Sbjct: 390 VRIEGGVFTKSGLMSCFDQILSQEKGKKLRENLRAL 425
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 52.0 bits (124), Expect = 4e-07
Identities = 72/440 (16%), Positives = 133/440 (30%), Gaps = 175/440 (39%)
Query: 83 HTYNSTIEDIYELSADSIKRIHINFIDQEIQVENIFLHENMKSIWNMENKYDLIITEMFL 142
TY+ + D+ + SA+++ I + E +F +++ +L
Sbjct: 178 QTYHVLVGDLIKFSAETLS----ELIRTTLDAEKVFTQ-----------GLNIL---EWL 219
Query: 143 TDAFLV--IPYLYKVPYISIASSTLHPQ--H----SERLGLPDNPSYIPSYVSAYTDHM- 193
+ YL +P IS + Q H ++ LG P + SY+ T H
Sbjct: 220 ENPSNTPDKDYLLSIP-ISCPLIGVI-QLAHYVVTAKLLGF--TPGELRSYLKGATGHSQ 275
Query: 194 ---------------SFTERLSNTFVGLYYKWYYDYKSHGAANRIIHKYFPEI---PRI- 234
SF + L++ G ++ +P P I
Sbjct: 276 GLVTAVAIAETDSWESFFVSVRKAITVLFF--------IGVR---CYEAYPNTSLPPSIL 324
Query: 235 QD-----------LLNTCSLTL---------VNTH----HTINIARPL---PANVVEIGG 267
+D +L+ +LT N+H + I+ L N+V + G
Sbjct: 325 EDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEIS--LVNGAKNLV-VSG 381
Query: 268 IHVKPAKKLNEEMERFLNESHNGVIYFSMGSMLKTSSFPPDKFKAFLKAFSKIP--QRVL 325
P + L + + L+ + P + S+IP +R L
Sbjct: 382 ----PPQSL-----------------YGLNLTLRKAKAPSGLDQ------SRIPFSERKL 414
Query: 326 WKFEDNDTSIFKPYKNIRTSSWMPQRDIFAHPNMKLFISHGGLLG------ITEAVYEGI 379
KF ++ F P + + P F H LL + V +
Sbjct: 415 -KF----SNRFLP--------------VAS-P----F--HSHLLVPASDLINKDLVKNNV 448
Query: 380 PV----LGIPVFG-DQWANIKKLESLKAGKLLPYLEITEETV-------SDALKIV---- 423
+ IPV+ ++++ L + +++ I V A I+
Sbjct: 449 SFNAKDIQIPVYDTFDGSDLRVLSGSISERIVD--CIIRLPVKWETTTQFKATHILDFGP 506
Query: 424 -----LSPEYKENAEDLGTR 438
L N + G R
Sbjct: 507 GGASGLGVLTHRNKDGTGVR 526
Score = 51.6 bits (123), Expect = 5e-07
Identities = 56/328 (17%), Positives = 97/328 (29%), Gaps = 120/328 (36%)
Query: 242 SLTLVNTHHTINIARPLPANVVEIGGIHVKPAKKLNEEMERFLNESHNGVIYFSMGSMLK 301
LTL +H ++ +P A +L E+ + L E G + +
Sbjct: 8 PLTL--SHGSLEHVLLVPTA------SFF-IASQLQEQFNKILPEPTEG-----FAADDE 53
Query: 302 TSSFPPD---KFKAFL---------KAFSKIPQRVLWKFE------------------DN 331
++ P + KF ++ F ++ L +FE +N
Sbjct: 54 PTT-PAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQEN 112
Query: 332 DTSIFKPYKNIRT---SSWMPQRDIFAHPNMKLFISHGGLLGITEAVYEGIPVLGIPVFG 388
DT++ K + I+ + M +R N LF AV EG L + +FG
Sbjct: 113 DTTLVKTKELIKNYITARIMAKRPFDKKSNSALF----------RAVGEGNAQL-VAIFG 161
Query: 389 DQWANIKKLESLKAGKLLPYLEITEETVSDALKIVLSPEYKENAEDL----GTRFRDRPQ 444
Q G Y E E L+ L Y DL + +
Sbjct: 162 GQ------------GNTDDYFE--E------LRD-LYQTYHVLVGDLIKFSAETLSELIR 200
Query: 445 SPLEVAIY---------WIEYVIKYNGAYHLQSAAVKLTWYQYYLLDIALVLIVGLVS-- 493
+ L+ W+E +L S + + LI G++
Sbjct: 201 TTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPI------------SCPLI-GVIQLA 247
Query: 494 ----VCFVLKY--------LCGSLVRRK 509
+L + L G+ +
Sbjct: 248 HYVVTAKLLGFTPGELRSYLKGATGHSQ 275
Score = 50.0 bits (119), Expect = 2e-06
Identities = 64/418 (15%), Positives = 116/418 (27%), Gaps = 167/418 (39%)
Query: 135 LIITEMFLTDAFLVIPYLYKVPYISIASSTL-------HPQHSERLGLPDNPSYIPSYVS 187
L ++ L LV + +S L P+ +E D P+ V
Sbjct: 9 LTLSHGSLEHVLLVPTASF------FIASQLQEQFNKILPEPTEGFAADDEPTTPAELVG 62
Query: 188 AYTDHMS----------FTERLS---NTFVGLY------------------------YKW 210
+ ++S F + L+ F Y +
Sbjct: 63 KFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKEL 122
Query: 211 --YYDYKSHGAANRIIHK-----------------------------YFPEI-------- 231
Y + A R K YF E+
Sbjct: 123 IKNY-ITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYH 181
Query: 232 PRIQDLLNTCSLTLVNTHHTINIARPLPANVVEIGGIHVK-----PAKKLNEEMERFLNE 286
+ DL+ + TL I L A V G+++ P+ +++ +L
Sbjct: 182 VLVGDLIKFSAETLSEL-----IRTTLDAEKVFTQGLNILEWLENPSNTPDKD---YLLS 233
Query: 287 SH-----NGVI----YFSMGSMLKTSSFPPDKFKAFLKAFSKIPQRVL----------WK 327
GVI Y K F P + +++LK + Q ++ W+
Sbjct: 234 IPISCPLIGVIQLAHYV---VTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWE 290
Query: 328 -FEDNDTSIFKPYKNIRTSSWM---PQRDIFAHPNMKLFISHGGLLGITEAVYEGIP--- 380
F + I ++ A+PN L S +L + EG+P
Sbjct: 291 SFFVSVRKA------ITVLFFIGVRCYE---AYPNTSLPPS---ILEDSLENNEGVPSPM 338
Query: 381 --VLGIPVFGDQWANIKKLESL--KAGKLLPYLEITEETVSDALK-----IVLS--PE 427
+ + ++++ K LP + V +L +V+S P+
Sbjct: 339 LSISNLT--------QEQVQDYVNKTNSHLP----AGKQVEISLVNGAKNLVVSGPPQ 384
Score = 35.8 bits (82), Expect = 0.041
Identities = 27/176 (15%), Positives = 54/176 (30%), Gaps = 56/176 (31%)
Query: 273 AKKLNEEMERFLNESHNGVIYFSMGSMLK------TSSFPPDKFKAFLKAFSKIPQRVLW 326
A+ + + ++ G FS+ ++ T F +K K + +S + +
Sbjct: 1642 AQDVWNRADNHFKDT-YG---FSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIV 1697
Query: 327 KFEDNDTSIFKPYKNIRTSSWMPQRDIFAHPNMKLFISHGGLLGITE----AVYEGIPVL 382
+ IFK N ++S+ F GLL T+ A + ++
Sbjct: 1698 DGKLKTEKIFKEI-NEHSTSYT-----FRSEK--------GLLSATQFTQPA----LTLM 1739
Query: 383 GIPVFGD--QWANIKKLE-----SL--------KAGKLLPYLEITEETVSDALKIV 423
F D I SL A + ++ +++V
Sbjct: 1740 EKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVM---------SIESLVEVV 1786
Score = 28.1 bits (62), Expect = 8.3
Identities = 22/147 (14%), Positives = 51/147 (34%), Gaps = 41/147 (27%)
Query: 22 RIQQCSKILAIFPTPAKSHQIIFDTILVELYQRGHDLTVITQYPETLV----HYERMKV- 76
+ + + L PA + + L G V++ P++L + K
Sbjct: 352 YVNKTNSHL-----PAGKQ------VEISLVN-GAKNLVVSGPPQSLYGLNLTLRKAKAP 399
Query: 77 --LD----------IKGTHT-------YNSTI-EDIYELSADSIKRIHINFIDQE--IQV 114
LD +K ++ ++S + +L + + +++F ++ I V
Sbjct: 400 SGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPV 459
Query: 115 ENIFLHENMKSIWNM--ENKYDLIITE 139
+ F +++ + E D II
Sbjct: 460 YDTFDGSDLRVLSGSISERIVDCIIRL 486
>3hbf_A Flavonoid 3-O-glucosyltransferase; glycosyltransferase, GT-B fold,
GT1, phenylpropanoid metabolism; HET: UDP MYC; 2.10A
{Medicago truncatula} PDB: 3hbj_A*
Length = 454
Score = 51.4 bits (124), Expect = 4e-07
Identities = 41/159 (25%), Positives = 71/159 (44%), Gaps = 20/159 (12%)
Query: 291 VIYFSMGSMLKTSSFPPDKFKAF---LKAFSKIPQRVLWKFEDNDTSIFKPYKNIRTS-- 345
V+Y S GS+ + PP + A L+ +W F + RT
Sbjct: 275 VVYISFGSV---VTPPPHELTALAESLEE-CG--FPFIWSFRGDPKEKLPKGFLERTKTK 328
Query: 346 ----SWMPQRDIFAHPNMKLFISHGGLLGITEAVYEGIPVLGIPVFGDQWANIKKLES-L 400
+W PQ +I H ++ +F++H G + E + G+P++ P FGDQ N ES L
Sbjct: 329 GKIVAWAPQVEILKHSSVGVFLTHSGWNSVLECIVGGVPMISRPFFGDQGLNTILTESVL 388
Query: 401 KAGKLLPYLEITEETVSDALKIVLSPE----YKENAEDL 435
+ G + +T+E++ AL++ +S E ++ L
Sbjct: 389 EIGVGVDNGVLTKESIKKALELTMSSEKGGIMRQKIVKL 427
>2acv_A Triterpene UDP-glucosyl transferase UGT71G1; glycosyltransferase;
HET: UDP; 2.00A {Medicago truncatula} SCOP: c.87.1.10
PDB: 2acw_A*
Length = 463
Score = 49.1 bits (118), Expect = 2e-06
Identities = 33/125 (26%), Positives = 55/125 (44%), Gaps = 18/125 (14%)
Query: 291 VIYFSMGSMLKTSSFPPDKFKAF---LKAFSKIPQRVLWKFEDNDTSIFKP--YKNIRTS 345
V++ GSM SF P + + LK S R LW + +F + +
Sbjct: 278 VVFLCFGSM--GVSFGPSQIREIALGLKH-SG--VRFLWSNSA-EKKVFPEGFLEWMELE 331
Query: 346 ------SWMPQRDIFAHPNMKLFISHGGLLGITEAVYEGIPVLGIPVFGDQWANIKKL-E 398
W PQ ++ AH + F+SH G I E+++ G+P+L P++ +Q N +L +
Sbjct: 332 GKGMICGWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVK 391
Query: 399 SLKAG 403
G
Sbjct: 392 EWGVG 396
>2vch_A Hydroquinone glucosyltransferase; glycosyltransferase,
N-glucosyltransferase, UDP-glucose- dependent, plant
glycosyltransferase; HET: UDP; 1.45A {Arabidopsis
thaliana} SCOP: c.87.1.10 PDB: 2vce_A* 2vg8_A*
Length = 480
Score = 46.5 bits (111), Expect = 2e-05
Identities = 36/144 (25%), Positives = 56/144 (38%), Gaps = 41/144 (28%)
Query: 291 VIYFSMGSMLKTSSFPPDKFKAF---LKAFSKIPQRVLW----KFEDNDTSIFKPYKNI- 342
V+Y S GS + ++ L S+ QR LW ++S F +
Sbjct: 270 VLYVSFGSG---GTLTCEQLNELALGLAD-SE--QRFLWVIRSPSGIANSSYFDSHSQTD 323
Query: 343 -----------RTS-------SWMPQRDIFAHPNMKLFISHGG----LLGITEAVYEGIP 380
RT W PQ + AHP+ F++H G L E+V GIP
Sbjct: 324 PLTFLPPGFLERTKKRGFVIPFWAPQAQVLAHPSTGGFLTHCGWNSTL----ESVVSGIP 379
Query: 381 VLGIPVFGDQWANIKKL-ESLKAG 403
++ P++ +Q N L E ++A
Sbjct: 380 LIAWPLYAEQKMNAVLLSEDIRAA 403
>2jzc_A UDP-N-acetylglucosamine transferase subunit ALG13; rossmann-like
fold, endoplasmic reticulum, glycosyltransferase,
structural genomics; NMR {Saccharomyces cerevisiae} PDB:
2ks6_A
Length = 224
Score = 35.9 bits (82), Expect = 0.016
Identities = 19/145 (13%), Positives = 39/145 (26%), Gaps = 9/145 (6%)
Query: 303 SSFPPDKFKAFLKAFSKIPQRVLWKFEDNDTSIFKPYKNIRTSSWMPQRDI--FAHPNMK 360
S F + + S+ + D ++ + +
Sbjct: 75 SEFEHLVQERGGQRESQKIPIDQFGCGDTARQYVLMNGKLKVIGFDFSTKMQSIIRDYSD 134
Query: 361 LFISHGGLLGITEAVYEGIPVLGIP----VFGDQWANIKKLESLKAGKLLPYLEITEETV 416
L ISH G I +++ P++ + Q K + G + TE +
Sbjct: 135 LVISHAGTGSILDSLRLNKPLIVCVNDSLMDNHQQQIADKFV--ELGYVW-SCAPTETGL 191
Query: 417 SDALKIVLSPEYKENAEDLGTRFRD 441
L+ + + K F
Sbjct: 192 IAGLRASQTEKLKPFPVSHNPSFER 216
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.4 bits (75), Expect = 0.074
Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 4/27 (14%)
Query: 393 NIKKLE-SLK--AGKLLPYLEITEETV 416
+KKL+ SLK A P L I + T+
Sbjct: 21 ALKKLQASLKLYADDSAPALAI-KATM 46
>3hbm_A UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter jejuni subsp} PDB:
3hbn_A*
Length = 282
Score = 32.8 bits (73), Expect = 0.20
Identities = 18/114 (15%), Positives = 30/114 (26%), Gaps = 8/114 (7%)
Query: 308 DKFKAFLKAFSKIPQRVLWKF-----EDNDTSIFKPYKNIRTSSWMPQRDIFAHPNMK-- 360
D L+ S++P+ + N + K K + A +
Sbjct: 168 DIKNLSLQIASELPKTKIISIATSSSNPNLKKLQKFAKLHNNIRLFIDHENIAKLMNESN 227
Query: 361 LFISHGGLLGITEAVYEGIPVLGIPVFGDQWANIKKLESLKAGKLLPYLEITEE 414
I L + EA+ I +Q + L YLE
Sbjct: 228 KLIISASSL-VNEALLLKANFKAICYVKNQESTATWLAKKGYEVEYKYLEHHHH 280
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like,
hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8
d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Length = 301
Score = 30.1 bits (69), Expect = 1.4
Identities = 6/25 (24%), Positives = 13/25 (52%)
Query: 267 GIHVKPAKKLNEEMERFLNESHNGV 291
G+H++ + +N M + + S V
Sbjct: 65 GLHMEEKRAINRLMNKAASSSIGDV 89
>1b79_A DNAB helicase; hexamer, DNA replication, hydrolase; 2.30A
{Escherichia coli} SCOP: a.81.1.1 PDB: 1jwe_A
Length = 119
Score = 28.7 bits (65), Expect = 1.9
Identities = 7/25 (28%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
Query: 38 KSHQIIFDTILVELYQRGHDLTVIT 62
+ H+ IF + L + G + +IT
Sbjct: 53 RPHRHIFTEMA-RLQESGSPIDLIT 76
>2r5u_A Replicative DNA helicase; DNAB, primase, replication,
ATP-binding, autocatal cleavage, DNA replication,
DNA-binding, endonuclease; 1.90A {Mycobacterium
tuberculosis}
Length = 200
Score = 29.6 bits (67), Expect = 2.1
Identities = 10/25 (40%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Query: 38 KSHQIIFDTILVELYQRGHDLTVIT 62
+HQ ++D IL +LY RG +T
Sbjct: 63 PAHQNVYDAIL-DLYGRGEPADAVT 86
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU
proteins, viral protein,transferase; 2.31A {Paramecium
bursaria chlorella virus NY} PDB: 3oy7_A*
Length = 413
Score = 29.8 bits (66), Expect = 2.3
Identities = 26/250 (10%), Positives = 64/250 (25%), Gaps = 5/250 (2%)
Query: 48 LVELYQRGHDLTVITQYPETLVHYERMKVLDIKGTHTYNSTIEDIYELSA--DSIKRIHI 105
+V + H++ V + + ++ D + E + S + I
Sbjct: 23 IVPRISKAHEVIVFGIHAFGRSVHANIEEFDAQTAEHVRGLNEQGFYYSGLSEFIDVHKP 82
Query: 106 N--FIDQEIQVENIFLHENMKSIWNMENKYDLIITEMFLTDAFLVIPYLYKVPYISIASS 163
+ I + V +L K + + + + + I KV + +A S
Sbjct: 83 DIVMIYNDPIVIGNYLLAMGKCSHRTKIVLYVDLVSKNIRENLWWIFSHPKVVGV-MAMS 141
Query: 164 TLHPQHSERLGLPDNPSYIPSYVSAYTDHMSFTERLSNTFVGLYYKWYYDYKSHGAANRI 223
G + + +V T + + + + + + I
Sbjct: 142 KCWISDICNYGCKVPINIVSHFVDTKTIYDARKLVGLSEYNDDVLFLNMNRNTARKRLDI 201
Query: 224 IHKYFPEIPRIQDLLNTCSLTLVNTHHTINIARPLPANVVEIGGIHVKPAKKLNEEMERF 283
L + ++ +V G +V
Sbjct: 202 YVLAAARFISKYPDAKVRFLCNSHHESKFDLHSIALRELVASGVDNVFTHLNKIMINRTV 261
Query: 284 LNESHNGVIY 293
L + ++Y
Sbjct: 262 LTDERVDMMY 271
>1kop_A Carbonic anhydrase; lyase, structural trimming; 1.90A {Neisseria
gonorrhoeae} SCOP: b.74.1.1 PDB: 1koq_A
Length = 223
Score = 29.2 bits (66), Expect = 2.4
Identities = 10/45 (22%), Positives = 18/45 (40%)
Query: 223 IIHKYFPEIPRIQDLLNTCSLTLVNTHHTINIARPLPANVVEIGG 267
I ++P I+ + + N HTI + P N + + G
Sbjct: 36 ITETVSGKLPAIKVNYKPSMVDVENNGHTIQVNYPEGGNTLTVNG 80
>1f46_A Cell division protein ZIPA; transmembrane, inner membrane, cell
cycle; 1.50A {Escherichia coli} SCOP: d.129.4.1 PDB:
1f47_B 1s1j_A* 1s1s_A* 1y2g_A* 1f7w_A 1f7x_A 1y2f_A*
Length = 140
Score = 28.7 bits (64), Expect = 2.4
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 282 RFLNESHNGVIYFSMGSMLKTSSFPPD 308
R L+ +G FS+ +M+K +F P+
Sbjct: 43 RHLSPDGSGPALFSLANMVKPGTFDPE 69
>3u31_A SIR2A, transcriptional regulatory protein SIR2 homologue;
Zn-binding domain, rossmann fold domain; HET: MYK NAD;
2.20A {Plasmodium falciparum} PDB: 3u3d_A* 3jwp_A*
Length = 290
Score = 28.8 bits (65), Expect = 4.1
Identities = 8/36 (22%), Positives = 11/36 (30%), Gaps = 7/36 (19%)
Query: 28 KILAIFPTPAKSHQIIFDTILVELYQRGHDLTVITQ 63
I H L L G+ +V+TQ
Sbjct: 103 SDYEIEINNG--HVA-----LSTLESLGYLKSVVTQ 131
>1ivn_A Thioesterase I; hydrolase, protease; 1.90A {Escherichia coli} SCOP:
c.23.10.5 PDB: 1u8u_A* 1j00_A* 1jrl_A 1v2g_A*
Length = 190
Score = 28.3 bits (63), Expect = 4.2
Identities = 11/84 (13%), Positives = 29/84 (34%), Gaps = 5/84 (5%)
Query: 407 PYLEITEETVSDALKIVLSPEYKENAEDLGTRFRDRPQSPLEVAI-----YWIEYVIKYN 461
P + E +D L+ + ++ + + PL + I Y Y ++
Sbjct: 63 PRWVLVELGGNDGLRGFQPQQTEQTLRQILQDVKAANAEPLLMQIRLPANYGRRYNEAFS 122
Query: 462 GAYHLQSAAVKLTWYQYYLLDIAL 485
Y + + +++ ++ L
Sbjct: 123 AIYPKLAKEFDVPLLPFFMEEVYL 146
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A
{Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A
2r6e_A 2vyf_A 2vye_A
Length = 454
Score = 28.7 bits (65), Expect = 4.6
Identities = 8/25 (32%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Query: 38 KSHQIIFDTILVELYQRGHDLTVIT 62
+HQ IF +L + RG + ++T
Sbjct: 46 AAHQKIFHAML-RVADRGEPVDLVT 69
>1j8f_A SIRT2, sirtuin 2, isoform 1, silencing INFO; gene regulation,
transferase; 1.70A {Homo sapiens} SCOP: c.31.1.5
Length = 323
Score = 28.6 bits (64), Expect = 4.7
Identities = 10/35 (28%), Positives = 13/35 (37%), Gaps = 7/35 (20%)
Query: 34 PTPAKSHQIIFDTILVELYQRGHDLTVITQYPETL 68
PT H + L +G L TQ +TL
Sbjct: 112 PTIC--HYFM-----RLLKDKGLLLRCYTQNIDTL 139
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus
aquaticus}
Length = 444
Score = 28.6 bits (65), Expect = 4.7
Identities = 5/25 (20%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Query: 38 KSHQIIFDTILVELYQRGHDLTVIT 62
++H+ I+ + L +G + ++T
Sbjct: 43 EAHRKIYAAMQ-ALRSQGRPVDLVT 66
>3gxv_A Replicative DNA helicase; hexameric helicase, primase,
replication, ATP-binding, autocatalytic cleavage, DNA
replication; 2.20A {Helicobacter pylori} PDB: 3gxv_D
3gxv_C
Length = 123
Score = 27.5 bits (62), Expect = 4.9
Identities = 3/25 (12%), Positives = 10/25 (40%), Gaps = 1/25 (4%)
Query: 38 KSHQIIFDTILVELYQRGHDLTVIT 62
+ + F+ L +L++ +
Sbjct: 43 PPNGLFFEIAL-KLHEEDCPIDENF 66
>3haz_A Proline dehydrogenase; proline utilization A, PUTA, flavoenzyme,
1-pyrroline-5-carboxylate dehydrogenase, oxidoreductase;
HET: FAD NAD; 2.10A {Bradyrhizobium japonicum usda 110}
Length = 1001
Score = 29.0 bits (65), Expect = 4.9
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 152 LYKVPYISIASSTLHPQHS 170
L P IS+ S LHP+
Sbjct: 230 LPDRPGISVKLSALHPRFE 248
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A
{Bacillus phage SPP1}
Length = 444
Score = 28.6 bits (65), Expect = 5.6
Identities = 5/25 (20%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
Query: 38 KSHQIIFDTILVELYQRGHDLTVIT 62
H I+ T+ +L ++G + +
Sbjct: 45 GKHFNIYFTMQ-DLDRKGQSVDFTS 68
>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent
ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens}
SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A*
2can_A*
Length = 439
Score = 28.4 bits (64), Expect = 6.3
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 419 ALKIVLSPEYKENAEDLGTRFRDR 442
AL+++ ENA+ LG R+
Sbjct: 336 ALEVLEEENLAENADKLGIILRNE 359
>2p1j_A POLIII, DNA polymerase III POLC-type; structural genomics,
exonuclease, PSI-2, protein structure initiative; HET:
DNA; 2.50A {Thermotoga maritima MSB8}
Length = 186
Score = 27.5 bits (62), Expect = 7.7
Identities = 10/45 (22%), Positives = 17/45 (37%), Gaps = 9/45 (20%)
Query: 244 TLVNTHHTINIARPLPANVVEIGGI---HVKPAKKLNEEMERFLN 285
TL+ R + EI GI ++ + + E + FL
Sbjct: 50 TLIKPS------REISRKSSEITGITQEMLENKRSIEEVLPEFLG 88
>1tvm_A PTS system, galactitol-specific IIB component; phosphotransferase
system (PTS), P-loop; NMR {Escherichia coli}
Length = 113
Score = 26.7 bits (59), Expect = 7.8
Identities = 10/50 (20%), Positives = 21/50 (42%)
Query: 110 QEIQVENIFLHENMKSIWNMENKYDLIITEMFLTDAFLVIPYLYKVPYIS 159
Q + + + I + LI T + +F IP ++ +P++S
Sbjct: 47 QSHNIPVELIQCRVNEIETYMDGVHLICTTARVDRSFGDIPLVHGMPFVS 96
>1ma3_A SIR2-AF2, transcriptional regulatory protein, SIR2 family;
enzyme-substrate complex, protein binding,
transcription; HET: ALY MES; 2.00A {Archaeoglobus
fulgidus} SCOP: c.31.1.5 PDB: 1s7g_A* 1yc2_A*
Length = 253
Score = 27.9 bits (63), Expect = 7.9
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 47 ILVELYQRGHDLTVITQ 63
+ EL + G VITQ
Sbjct: 84 AIAELERMGIVKAVITQ 100
>1m2k_A Silent information regulator 2; protein-ligand complex, gene
regulation; HET: APR; 1.47A {Archaeoglobus fulgidus}
SCOP: c.31.1.5 PDB: 1m2g_A* 1m2h_A* 1m2j_A* 1m2n_A*
1ici_A*
Length = 249
Score = 27.9 bits (63), Expect = 7.9
Identities = 11/36 (30%), Positives = 14/36 (38%), Gaps = 7/36 (19%)
Query: 28 KILAIFPTPAKSHQIIFDTILVELYQRGHDLTVITQ 63
K+ P A HQ EL + G +ITQ
Sbjct: 70 KVFNAQPNKA--HQA-----FAELERLGVLKCLITQ 98
>3pki_A NAD-dependent deacetylase sirtuin-6; ADP ribose, structural
genomics, structural genomics consortium, SGC,
hydrolase; HET: AR6; 2.04A {Homo sapiens} PDB: 3pkj_A*
Length = 355
Score = 28.2 bits (63), Expect = 7.9
Identities = 8/30 (26%), Positives = 13/30 (43%), Gaps = 7/30 (23%)
Query: 34 PTPAKSHQIIFDTILVELYQRGHDLTVITQ 63
PT H LV+L + G +++Q
Sbjct: 91 PTQT--HMA-----LVQLERVGLLRFLVSQ 113
>1yc5_A NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM, SIRT1,
nicotinamide, hydrolase; HET: ALY; 1.40A {Thermotoga
maritima} SCOP: c.31.1.5 PDB: 2h2d_A* 2h2f_A 2h2g_A*
2h2h_A* 2h2i_A* 2h4f_A* 2h4j_A* 3d4b_A* 3d81_A* 3pdh_A*
2h4h_A* 3jr3_A* 2h59_A*
Length = 246
Score = 27.9 bits (63), Expect = 8.2
Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 7/30 (23%)
Query: 34 PTPAKSHQIIFDTILVELYQRGHDLTVITQ 63
P A H + L +L ++G VITQ
Sbjct: 76 PNLA--HVL-----LAKLEEKGLIEAVITQ 98
>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for
structural genomics O infectious diseases, alpha and
beta protein; HET: LLP; 2.65A {Bacillus anthracis}
Length = 392
Score = 27.9 bits (63), Expect = 8.4
Identities = 5/24 (20%), Positives = 12/24 (50%)
Query: 419 ALKIVLSPEYKENAEDLGTRFRDR 442
AL+++ + E + LG + +
Sbjct: 295 ALEVLEEEKLTERSLQLGEKLVGQ 318
>3k35_A NAD-dependent deacetylase sirtuin-6; rossmann fold, Zn-binding
domain, structural genomics, struc genomics consortium,
SGC, ADP-ribosylation; HET: APR; 2.00A {Homo sapiens}
Length = 318
Score = 27.7 bits (62), Expect = 8.9
Identities = 8/30 (26%), Positives = 13/30 (43%), Gaps = 7/30 (23%)
Query: 34 PTPAKSHQIIFDTILVELYQRGHDLTVITQ 63
PT H LV+L + G +++Q
Sbjct: 91 PTQT--HMA-----LVQLERVGLLRFLVSQ 113
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.138 0.416
Gapped
Lambda K H
0.267 0.0677 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,057,557
Number of extensions: 495314
Number of successful extensions: 1367
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1312
Number of HSP's successfully gapped: 69
Length of query: 513
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 415
Effective length of database: 3,965,535
Effective search space: 1645697025
Effective search space used: 1645697025
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.6 bits)